Query 036269
Match_columns 623
No_of_seqs 251 out of 3146
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 18:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.6E-40 2.9E-44 362.8 31.3 531 31-617 95-714 (768)
2 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-38 4.9E-43 350.1 35.3 543 20-618 10-620 (680)
3 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-38 7.2E-43 344.1 35.6 521 20-618 17-556 (606)
4 3t6q_A CD180 antigen; protein- 100.0 6.6E-38 2.2E-42 340.2 33.9 530 21-618 19-558 (606)
5 3rgz_A Protein brassinosteroid 100.0 1.2E-38 4.1E-43 353.7 24.4 369 33-444 148-549 (768)
6 3vq2_A TLR4, TOLL-like recepto 100.0 9.2E-37 3.2E-41 331.2 29.2 502 37-618 12-532 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 9.2E-36 3.2E-40 327.7 35.4 526 38-617 6-594 (680)
8 3t6q_A CD180 antigen; protein- 100.0 3.7E-36 1.3E-40 326.4 31.0 509 38-618 14-534 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 8.8E-36 3E-40 321.3 33.5 501 20-591 13-530 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 2E-36 6.8E-41 324.6 22.1 487 42-618 11-508 (549)
11 2z63_A TOLL-like receptor 4, v 100.0 8.3E-35 2.8E-39 313.7 29.2 503 38-618 9-529 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-34 1.6E-38 320.1 30.3 489 19-558 9-541 (844)
13 3j0a_A TOLL-like receptor 5; m 100.0 7.3E-34 2.5E-38 318.5 27.2 504 39-618 7-558 (844)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-32 8.6E-37 292.7 28.5 207 23-247 14-234 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-31 9.6E-36 290.2 36.2 521 23-618 40-578 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-31 5.9E-36 284.1 29.6 460 39-553 3-479 (520)
17 4eco_A Uncharacterized protein 100.0 9.8E-33 3.3E-37 299.1 17.6 363 126-558 201-602 (636)
18 4eco_A Uncharacterized protein 100.0 3.6E-32 1.2E-36 294.7 20.0 425 23-532 63-602 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 2.8E-31 9.4E-36 292.2 24.4 357 126-553 443-838 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 4.5E-31 1.5E-35 280.9 23.5 446 61-618 3-479 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 1.1E-30 3.7E-35 287.5 23.7 419 30-533 315-843 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-29 7.1E-34 270.2 32.2 465 35-553 30-508 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 5.1E-29 1.7E-33 272.3 28.7 506 39-618 34-553 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.9E-30 3.4E-34 272.7 19.7 147 56-226 29-181 (562)
25 1o6v_A Internalin A; bacterial 100.0 1.6E-28 5.4E-33 256.9 24.2 342 34-470 44-385 (466)
26 3v47_A TOLL-like receptor 5B a 100.0 6.4E-27 2.2E-31 244.6 25.5 163 23-191 19-192 (455)
27 1o6v_A Internalin A; bacterial 100.0 1.9E-26 6.6E-31 241.1 29.0 337 22-449 54-390 (466)
28 4fmz_A Internalin; leucine ric 100.0 2E-26 6.8E-31 231.7 26.8 304 33-444 41-344 (347)
29 3v47_A TOLL-like receptor 5B a 100.0 1E-26 3.5E-31 243.0 24.9 367 38-471 12-406 (455)
30 3bz5_A Internalin-J, INLJ; leu 99.9 6E-27 2E-31 242.7 21.7 187 31-247 37-223 (457)
31 1jl5_A Outer protein YOPM; leu 99.9 6.7E-27 2.3E-31 242.2 19.9 343 36-496 11-368 (454)
32 1jl5_A Outer protein YOPM; leu 99.9 6.2E-27 2.1E-31 242.4 19.2 315 52-476 5-332 (454)
33 3o6n_A APL1; leucine-rich repe 99.9 8.8E-26 3E-30 230.6 23.5 152 55-225 42-197 (390)
34 4fmz_A Internalin; leucine ric 99.9 1E-25 3.4E-30 226.5 23.0 293 20-409 50-342 (347)
35 2id5_A Lingo-1, leucine rich r 99.9 2.9E-25 9.8E-30 233.3 24.7 191 39-245 14-209 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 9.2E-25 3.2E-29 223.0 25.1 303 34-444 43-350 (390)
37 3oja_B Anopheles plasmodium-re 99.9 6.6E-25 2.3E-29 236.4 23.5 153 56-226 49-204 (597)
38 3bz5_A Internalin-J, INLJ; leu 99.9 3.1E-24 1.1E-28 222.4 25.3 198 20-249 48-246 (457)
39 2id5_A Lingo-1, leucine rich r 99.9 4.5E-24 1.6E-28 224.2 27.0 306 20-384 17-330 (477)
40 3oja_B Anopheles plasmodium-re 99.9 8.4E-24 2.9E-28 227.8 25.0 303 34-444 49-356 (597)
41 3ogk_B Coronatine-insensitive 99.9 2.1E-25 7.1E-30 241.3 5.9 410 56-558 71-528 (592)
42 2p1m_B Transport inhibitor res 99.9 5.2E-25 1.8E-29 238.4 4.7 406 56-554 64-518 (594)
43 2ft3_A Biglycan; proteoglycan, 99.9 2E-22 6.7E-27 200.9 20.4 167 59-246 34-203 (332)
44 3ogk_B Coronatine-insensitive 99.9 1.9E-24 6.4E-29 233.9 6.0 440 72-615 63-546 (592)
45 1xku_A Decorin; proteoglycan, 99.9 1.7E-21 5.7E-26 194.0 23.6 190 37-246 32-226 (330)
46 1xku_A Decorin; proteoglycan, 99.9 2E-21 7E-26 193.4 23.0 168 59-246 32-202 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 9.6E-22 3.3E-26 195.9 19.3 191 36-247 33-228 (332)
48 2z80_A TOLL-like receptor 2, v 99.9 4.9E-22 1.7E-26 199.8 16.0 198 36-248 31-234 (353)
49 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-21 3.9E-26 193.1 12.9 252 29-332 38-305 (313)
50 4fcg_A Uncharacterized protein 99.9 6E-21 2E-25 189.1 17.4 196 35-247 80-288 (328)
51 1ozn_A Reticulon 4 receptor; N 99.9 6.5E-21 2.2E-25 185.5 16.8 209 22-247 19-236 (285)
52 4fcg_A Uncharacterized protein 99.9 1.2E-20 4.1E-25 186.9 17.8 211 19-245 86-310 (328)
53 2p1m_B Transport inhibitor res 99.9 3.3E-22 1.1E-26 216.3 7.0 409 33-472 63-518 (594)
54 1z7x_W Ribonuclease inhibitor; 99.8 3.9E-23 1.3E-27 216.3 -1.4 166 292-470 227-408 (461)
55 2z66_A Variable lymphocyte rec 99.8 2.4E-20 8.3E-25 183.5 17.9 196 39-247 10-210 (306)
56 2z80_A TOLL-like receptor 2, v 99.8 2.5E-20 8.6E-25 187.3 17.6 258 23-328 40-311 (353)
57 1ogq_A PGIP-2, polygalacturona 99.8 5E-21 1.7E-25 188.5 10.7 173 58-247 50-232 (313)
58 1z7x_W Ribonuclease inhibitor; 99.8 2.1E-22 7.3E-27 210.7 0.7 355 36-443 3-408 (461)
59 3zyj_A Leucine-rich repeat-con 99.8 6.7E-20 2.3E-24 189.9 19.4 193 37-246 44-241 (440)
60 3zyi_A Leucine-rich repeat-con 99.8 6.2E-20 2.1E-24 190.9 19.0 193 37-246 55-252 (452)
61 3g06_A SSPH2 (leucine-rich rep 99.8 3.5E-19 1.2E-23 189.9 25.0 133 37-191 41-173 (622)
62 1ozn_A Reticulon 4 receptor; N 99.8 5.6E-20 1.9E-24 178.9 16.7 196 38-248 13-213 (285)
63 2z66_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 178.0 18.5 213 22-252 15-239 (306)
64 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-20 4E-25 186.5 9.1 262 37-361 11-276 (317)
65 3zyj_A Leucine-rich repeat-con 99.8 6.2E-19 2.1E-23 182.7 20.5 212 22-252 51-271 (440)
66 3zyi_A Leucine-rich repeat-con 99.8 7.8E-19 2.7E-23 182.6 20.6 211 23-252 63-282 (452)
67 2z62_A TOLL-like receptor 4, v 99.8 8.1E-19 2.8E-23 169.8 18.4 209 22-247 15-235 (276)
68 1h6u_A Internalin H; cell adhe 99.8 8.3E-19 2.8E-23 172.1 17.1 196 30-249 35-230 (308)
69 1p9a_G Platelet glycoprotein I 99.8 1.1E-18 3.7E-23 169.5 17.1 196 33-247 7-206 (290)
70 3o53_A Protein LRIM1, AGAP0063 99.8 7.1E-20 2.4E-24 180.8 8.5 266 60-415 12-277 (317)
71 2o6q_A Variable lymphocyte rec 99.8 2.8E-18 9.7E-23 165.2 19.1 195 36-247 16-216 (270)
72 2o6q_A Variable lymphocyte rec 99.8 5.7E-18 2E-22 163.0 20.5 189 21-226 23-217 (270)
73 3g06_A SSPH2 (leucine-rich rep 99.8 2.5E-17 8.4E-22 175.6 27.1 189 17-246 43-231 (622)
74 2xwt_C Thyrotropin receptor; s 99.8 1.2E-18 4.1E-23 164.6 12.0 201 25-245 22-235 (239)
75 1h6u_A Internalin H; cell adhe 99.8 1.6E-17 5.6E-22 162.9 19.8 188 20-231 47-234 (308)
76 3rfs_A Internalin B, repeat mo 99.8 1.2E-18 4E-23 168.0 9.9 176 32-225 37-216 (272)
77 3oja_A Leucine-rich immune mol 99.8 2.4E-18 8E-23 179.9 11.8 237 56-355 32-270 (487)
78 1p9a_G Platelet glycoprotein I 99.7 2.8E-17 9.6E-22 159.5 17.8 186 21-226 17-207 (290)
79 3m19_A Variable lymphocyte rec 99.7 3.9E-17 1.3E-21 155.4 17.7 175 36-226 14-191 (251)
80 3rfs_A Internalin B, repeat mo 99.7 2.4E-17 8.2E-22 158.8 16.4 195 35-248 18-217 (272)
81 2z62_A TOLL-like receptor 4, v 99.7 3.7E-17 1.3E-21 158.1 17.3 194 40-251 11-215 (276)
82 2xwt_C Thyrotropin receptor; s 99.7 6.3E-18 2.1E-22 159.6 10.8 189 44-251 19-220 (239)
83 1h6t_A Internalin B; cell adhe 99.7 3.1E-17 1.1E-21 159.3 14.9 173 32-228 42-214 (291)
84 1wwl_A Monocyte differentiatio 99.7 3E-18 1E-22 168.7 7.5 173 57-246 94-284 (312)
85 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.9E-22 174.7 11.2 192 34-249 32-227 (487)
86 3m19_A Variable lymphocyte rec 99.7 3.6E-16 1.2E-20 148.7 18.4 166 21-192 21-192 (251)
87 1h6t_A Internalin B; cell adhe 99.7 2E-16 6.7E-21 153.7 16.8 189 36-248 24-212 (291)
88 1wwl_A Monocyte differentiatio 99.7 6E-17 2.1E-21 159.4 12.1 196 34-247 93-307 (312)
89 1m9s_A Internalin B; cell inva 99.7 3E-16 1E-20 167.1 13.7 181 26-230 33-213 (605)
90 4ay9_X Follicle-stimulating ho 99.7 4.1E-16 1.4E-20 156.0 13.4 193 39-247 12-213 (350)
91 2ast_B S-phase kinase-associat 99.7 1.2E-16 4E-21 159.5 8.6 122 60-189 49-178 (336)
92 4ezg_A Putative uncharacterize 99.7 6.7E-16 2.3E-20 140.8 12.6 150 56-227 42-194 (197)
93 1xeu_A Internalin C; cellular 99.7 3E-16 1E-20 149.9 10.7 171 34-229 17-187 (263)
94 4glp_A Monocyte differentiatio 99.6 3.1E-16 1.1E-20 154.2 10.0 217 37-278 65-305 (310)
95 4glp_A Monocyte differentiatio 99.6 2.8E-16 9.5E-21 154.5 9.6 221 56-303 62-305 (310)
96 1m9s_A Internalin B; cell inva 99.6 3.4E-16 1.2E-20 166.7 10.9 191 35-249 20-210 (605)
97 2o6s_A Variable lymphocyte rec 99.6 1.3E-15 4.3E-20 140.4 13.1 146 40-191 11-160 (208)
98 2ast_B S-phase kinase-associat 99.6 2.7E-16 9.3E-21 156.8 8.9 197 36-247 47-258 (336)
99 3e6j_A Variable lymphocyte rec 99.6 2.9E-15 9.9E-20 139.9 15.3 148 38-191 21-171 (229)
100 4ezg_A Putative uncharacterize 99.6 2.2E-15 7.5E-20 137.3 12.9 150 33-191 41-193 (197)
101 2o6s_A Variable lymphocyte rec 99.6 2.8E-15 9.7E-20 138.0 13.8 168 23-214 16-189 (208)
102 2v9t_B SLIT homolog 2 protein 99.6 2.8E-15 9.4E-20 139.1 13.6 148 39-191 14-164 (220)
103 2ca6_A RAN GTPase-activating p 99.6 4.8E-16 1.6E-20 158.1 8.3 204 33-247 29-285 (386)
104 1xeu_A Internalin C; cellular 99.6 3.1E-15 1.1E-19 142.8 13.0 157 24-192 29-185 (263)
105 3goz_A Leucine-rich repeat-con 99.6 1.7E-15 5.9E-20 152.3 11.8 201 36-247 22-264 (362)
106 3goz_A Leucine-rich repeat-con 99.6 6.5E-16 2.2E-20 155.4 8.5 174 41-226 3-208 (362)
107 4ay9_X Follicle-stimulating ho 99.6 4E-15 1.4E-19 148.9 14.1 224 348-616 31-255 (350)
108 3cvr_A Invasion plasmid antige 99.6 1E-14 3.6E-19 153.4 17.2 176 37-249 60-243 (571)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 8.6E-15 2.9E-19 135.7 13.7 147 39-191 14-165 (220)
110 2xot_A Amphoterin-induced prot 99.6 9.5E-15 3.2E-19 146.7 14.2 147 39-191 21-175 (361)
111 2xot_A Amphoterin-induced prot 99.6 6.5E-15 2.2E-19 147.9 11.6 163 23-191 27-201 (361)
112 3cvr_A Invasion plasmid antige 99.6 7.6E-14 2.6E-18 146.8 18.1 175 18-228 63-244 (571)
113 2ca6_A RAN GTPase-activating p 99.6 6.1E-15 2.1E-19 149.9 9.5 204 32-247 56-314 (386)
114 3e6j_A Variable lymphocyte rec 99.5 1.8E-13 6.3E-18 127.6 16.0 143 22-169 27-174 (229)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 8.4E-14 2.9E-18 129.0 13.6 147 61-226 14-165 (220)
116 2v9t_B SLIT homolog 2 protein 99.5 7.1E-14 2.4E-18 129.5 13.1 147 61-226 14-164 (220)
117 1dce_A Protein (RAB geranylger 99.5 3.5E-16 1.2E-20 165.6 -3.6 191 34-242 347-566 (567)
118 2ell_A Acidic leucine-rich nuc 99.5 7.6E-14 2.6E-18 123.5 11.2 131 36-172 24-164 (168)
119 2je0_A Acidic leucine-rich nuc 99.5 1.2E-13 4.2E-18 119.5 10.4 122 36-162 17-148 (149)
120 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.5E-18 122.0 10.6 134 82-230 24-163 (168)
121 1a9n_A U2A', U2A'; complex (nu 99.4 4E-13 1.4E-17 119.8 8.2 122 36-163 19-149 (176)
122 1w8a_A SLIT protein; signaling 99.4 1.7E-12 5.8E-17 117.4 12.4 129 39-171 11-143 (192)
123 1a9n_A U2A', U2A'; complex (nu 99.4 2.1E-13 7.2E-18 121.6 6.3 131 54-191 15-152 (176)
124 2wfh_A SLIT homolog 2 protein 99.4 2.4E-12 8.1E-17 116.4 13.1 120 39-163 13-135 (193)
125 2je0_A Acidic leucine-rich nuc 99.4 4.8E-13 1.7E-17 115.7 8.1 122 58-186 17-147 (149)
126 4b8c_D Glucose-repressible alc 99.4 1E-12 3.5E-17 143.6 11.1 150 36-192 173-329 (727)
127 2wfh_A SLIT homolog 2 protein 99.4 4.8E-12 1.6E-16 114.4 13.5 123 61-191 13-138 (193)
128 2o6r_A Variable lymphocyte rec 99.4 6.3E-12 2.2E-16 112.1 13.1 126 38-168 9-138 (177)
129 4b8c_D Glucose-repressible alc 99.4 4.6E-13 1.6E-17 146.4 6.6 130 56-191 222-353 (727)
130 1w8a_A SLIT protein; signaling 99.4 3.7E-12 1.3E-16 115.2 11.4 123 61-191 11-138 (192)
131 2o6r_A Variable lymphocyte rec 99.3 3.1E-11 1.1E-15 107.6 13.5 124 60-191 9-136 (177)
132 1ds9_A Outer arm dynein; leuci 99.3 2E-13 7E-18 124.3 -2.1 143 37-185 24-180 (198)
133 3sb4_A Hypothetical leucine ri 99.2 1.8E-11 6.1E-16 121.1 10.6 190 35-242 48-327 (329)
134 1dce_A Protein (RAB geranylger 99.2 3.2E-11 1.1E-15 127.6 12.4 102 83-192 442-546 (567)
135 1ds9_A Outer arm dynein; leuci 99.2 1.3E-12 4.3E-17 119.1 -1.2 125 59-191 24-152 (198)
136 3sb4_A Hypothetical leucine ri 99.2 4E-11 1.4E-15 118.6 7.9 79 372-466 248-327 (329)
137 2r9u_A Variable lymphocyte rec 99.1 2.6E-10 9E-15 100.9 11.5 99 39-163 15-114 (174)
138 3g39_A Variable lymphocyte rec 99.1 3.9E-10 1.3E-14 99.4 11.5 96 62-163 13-111 (170)
139 2r9u_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 100.0 10.0 101 85-192 15-118 (174)
140 3g39_A Variable lymphocyte rec 99.0 9E-10 3.1E-14 97.1 10.1 102 83-191 10-114 (170)
141 3un9_A NLR family member X1; l 98.9 4E-10 1.4E-14 112.7 2.3 161 57-228 71-253 (372)
142 3un9_A NLR family member X1; l 98.8 4.1E-10 1.4E-14 112.6 0.8 154 35-192 71-252 (372)
143 4fdw_A Leucine rich hypothetic 98.8 1.1E-07 3.9E-12 95.9 17.7 184 36-244 113-308 (401)
144 4fs7_A Uncharacterized protein 98.8 7.6E-08 2.6E-12 97.6 16.2 328 48-465 59-393 (394)
145 4fdw_A Leucine rich hypothetic 98.8 1.1E-07 3.8E-12 96.0 15.5 192 37-252 158-361 (401)
146 4fs7_A Uncharacterized protein 98.8 1.3E-07 4.3E-12 95.9 16.0 328 71-490 60-393 (394)
147 2ifg_A High affinity nerve gro 98.7 2.9E-08 9.9E-13 98.9 9.6 94 64-163 14-112 (347)
148 3e4g_A ATP synthase subunit S, 98.7 1.1E-08 3.7E-13 88.6 4.5 92 516-621 61-153 (176)
149 2ifg_A High affinity nerve gro 98.6 5.6E-08 1.9E-12 96.7 8.9 100 40-144 12-116 (347)
150 3e4g_A ATP synthase subunit S, 98.5 2.6E-08 9E-13 86.2 2.2 64 348-415 62-129 (176)
151 2ra8_A Uncharacterized protein 98.4 3.7E-07 1.3E-11 90.3 7.5 59 102-162 166-227 (362)
152 4gt6_A Cell surface protein; l 98.4 3.7E-05 1.3E-09 77.6 22.4 133 49-188 52-191 (394)
153 2ra8_A Uncharacterized protein 98.4 2.8E-07 9.4E-12 91.3 6.1 158 56-226 137-319 (362)
154 4gt6_A Cell surface protein; l 98.2 7.9E-05 2.7E-09 75.2 19.4 111 72-189 53-170 (394)
155 1io0_A Tropomodulin; LRR prote 98.0 4.1E-06 1.4E-10 74.5 5.7 63 56-119 34-104 (185)
156 1io0_A Tropomodulin; LRR prote 98.0 6.2E-06 2.1E-10 73.3 5.7 113 77-191 31-163 (185)
157 3rw6_A Nuclear RNA export fact 97.9 8.6E-06 2.9E-10 76.2 5.8 78 106-185 168-257 (267)
158 3rw6_A Nuclear RNA export fact 97.7 1.3E-05 4.4E-10 75.0 3.4 61 128-191 167-232 (267)
159 4h09_A Hypothetical leucine ri 97.6 0.0049 1.7E-07 61.5 20.2 34 57-91 45-78 (379)
160 4h09_A Hypothetical leucine ri 97.5 0.0091 3.1E-07 59.6 20.8 36 78-117 42-78 (379)
161 3rfe_A Platelet glycoprotein I 96.4 0.0053 1.8E-07 50.4 6.1 54 40-94 12-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 95.1 0.023 7.9E-07 50.0 5.2 62 58-119 41-109 (197)
163 3rfe_A Platelet glycoprotein I 94.8 0.05 1.7E-06 44.5 6.0 54 135-191 12-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 94.6 0.051 1.8E-06 47.7 6.0 86 78-164 37-136 (197)
165 2a5y_B CED-4; apoptosis; HET: 66.6 1.5 5.2E-05 45.8 0.8 18 1-18 456-473 (549)
166 2lz0_A Uncharacterized protein 48.9 14 0.00048 28.0 3.4 44 70-117 8-52 (100)
167 2lz0_A Uncharacterized protein 33.0 42 0.0014 25.3 3.8 48 45-93 5-54 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.6e-40 Score=362.82 Aligned_cols=531 Identities=18% Similarity=0.115 Sum_probs=351.6
Q ss_pred CCCCCCCCcEEEcccCCcc-cccc--cC-CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccCCCchh--
Q 036269 31 SINTFEDLTGISLMFNDIH-EVHE--GL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS-- 103 (623)
Q Consensus 31 ~~~~~~~l~~L~l~~~~~~-~l~~--~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~-- 103 (623)
.+..+++|++|++++|.+. .+|. .+ .+++|++|++++|.+. ..+..++.++++|++|++++|.+. +..|..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~ 172 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS--GANVVGWV 172 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE--EETHHHHH
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC--CcCChhhh
Confidence 5677788999999999885 3555 44 7889999999998876 445444477888888888888885 445544
Q ss_pred -hhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCc
Q 036269 104 -LSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLE 182 (623)
Q Consensus 104 -~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~ 182 (623)
+.++++|++|++++|. +........+++|++|++++|.+...+..++++++|++|++++|...+.+|.. +.++++|+
T Consensus 173 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~ 250 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELK 250 (768)
T ss_dssp HTTCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCC
T ss_pred hhccCCCCCEEECCCCc-ccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCC
Confidence 6677888888888887 65443447778888888888877743334788888888888885544455554 77788888
Q ss_pred EEEecccccccccccc-----------cccccccccccccCC-CCccEEEeecCCCc-cCCCc-ccccCccEEEEEeCCC
Q 036269 183 ELYMSKTFCHWQFENE-----------DDSRSNAKFIELGAL-SRLTSLHIDIPEGE-IMPSD-MSFQNLTSFSITIGGP 248 (623)
Q Consensus 183 ~L~l~~~~~~~~~~~~-----------~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~-~~~~~-~~~~~L~~L~l~~~~~ 248 (623)
+|++++|.+....+.. .......++..+... ++|+.|++++|.+. .+|.. ..+++|++|+++.+..
T Consensus 251 ~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp EEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence 8888777664222110 001112344444443 66666666666653 33333 5666677777666543
Q ss_pred C-CCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEec
Q 036269 249 E-EVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVG 327 (623)
Q Consensus 249 ~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 327 (623)
. ..+...+ ...+.++.+.+..+...+.+|.++....++|+.|++++|.....+++.+....+++|++|++++
T Consensus 331 ~~~ip~~~l-------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 331 SGELPMDTL-------LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp EEECCHHHH-------TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred cCcCCHHHH-------hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 3 1211111 1456778888887766667777777764488888888876544444444323367899999988
Q ss_pred ccCceeecccccccccccccccceeecccCcccccccccccC--CCcCCCccEEEEeecCCcccccchhHHHhccccceE
Q 036269 328 CNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLP--AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRL 405 (623)
Q Consensus 328 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 405 (623)
| .+...... ....+++|+.|+++++. +. +.+| .+.+++|+.|++++| .+++..|.. +..+++|++|
T Consensus 404 n-~l~~~~p~----~l~~l~~L~~L~Ls~N~-l~----~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L 471 (768)
T 3rgz_A 404 N-GFTGKIPP----TLSNCSELVSLHLSFNY-LS----GTIPSSLGSLSKLRDLKLWLN-MLEGEIPQE-LMYVKTLETL 471 (768)
T ss_dssp S-EEEEECCG----GGGGCTTCCEEECCSSE-EE----SCCCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEE
T ss_pred C-ccccccCH----HHhcCCCCCEEECcCCc-cc----CcccHHHhcCCCCCEEECCCC-cccCcCCHH-HcCCCCceEE
Confidence 8 44422221 45668889999999886 32 2222 246788999999885 455556665 6788899999
Q ss_pred EEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcc
Q 036269 406 RVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKA 485 (623)
Q Consensus 406 ~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~ 485 (623)
++++ +.++... |..+..+++|++|++++|.-...+ +..++.+++|++|++++| +++...|..++.++
T Consensus 472 ~L~~-N~l~~~~--------p~~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 472 ILDF-NDLTGEI--------PSGLSNCTNLNWISLSNNRLTGEI---PKWIGRLENLAILKLSNN-SFSGNIPAELGDCR 538 (768)
T ss_dssp ECCS-SCCCSCC--------CGGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSS-CCEEECCGGGGGCT
T ss_pred EecC-CcccCcC--------CHHHhcCCCCCEEEccCCccCCcC---ChHHhcCCCCCEEECCCC-cccCcCCHHHcCCC
Confidence 9988 5555332 666778888999999888533344 455667888899999885 56656688888888
Q ss_pred cchhhhhhccccc-ccc--------------------------------------------------------------e
Q 036269 486 AAEEMVLYRNRRD-QIH--------------------------------------------------------------I 502 (623)
Q Consensus 486 ~L~~l~~~~~~~~-~l~--------------------------------------------------------------~ 502 (623)
+|+.|++.+|... .+. .
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 8888888876431 000 1
Q ss_pred eccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchh-hhhcCCCCcccCcCCCcceeecCcc
Q 036269 503 HATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQ-EIIMNDEGEVGLQGASTEKITFPSL 581 (623)
Q Consensus 503 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~-~l~~~~~~~~~~~~~~~~~~~l~~L 581 (623)
.+.+..|..+..+++|+.|++++|.--..+|. .+.++++|+.|++++|. ++ .+|. ....+++|
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~Ls~N~-l~g~ip~-------------~l~~L~~L 682 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK--EIGSMPYLFILNLGHND-ISGSIPD-------------EVGDLRGL 682 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCG--GGGGCTTCCEEECCSSC-CCSCCCG-------------GGGGCTTC
T ss_pred eecccCchhhhccccccEEECcCCcccccCCH--HHhccccCCEEeCcCCc-cCCCCCh-------------HHhCCCCC
Confidence 22233455667788899999998543334433 37888999999999887 44 4443 45567777
Q ss_pred cceecccCcccceecCCCCcceeecCCccEEEeccC
Q 036269 582 FSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDC 617 (623)
Q Consensus 582 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c 617 (623)
+.|+++++.--..++. .. ..+++|++|+++++
T Consensus 683 ~~LdLs~N~l~g~ip~-~l---~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQ-AM---SALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCEECCCG-GG---GGCCCCSEEECCSS
T ss_pred CEEECCCCcccCcCCh-HH---hCCCCCCEEECcCC
Confidence 7777777654444444 22 23577777777776
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-38 Score=350.14 Aligned_cols=543 Identities=16% Similarity=0.164 Sum_probs=342.8
Q ss_pred eecCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCccccc
Q 036269 20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~ 97 (623)
...+.++..+|. ...+++++|++++|.++.+++. + ++++|++|++++|.+..+++..|.++++|++|++++|.+
T Consensus 10 ~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--- 85 (680)
T 1ziw_A 10 DCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL--- 85 (680)
T ss_dssp ECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC---
T ss_pred ECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc---
Confidence 344566777874 3348899999999999988874 3 899999999999999988777789999999999999999
Q ss_pred CCCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchh
Q 036269 98 FSLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRG 173 (623)
Q Consensus 98 ~~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~ 173 (623)
..+|. .+.++++|++|++++|. +..+ ..++++++|++|++++|.++.. |..++++++|++|++++| .+..++..
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 163 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSE 163 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHH
T ss_pred CccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHH
Confidence 67776 58999999999999998 8776 4689999999999999998854 567889999999999995 45556544
Q ss_pred hhh--ccccCcEEEecccccccccccccccccc-----------------cccccccCCCCccEEEeecCCCccCCCc--
Q 036269 174 VLS--RLRKLEELYMSKTFCHWQFENEDDSRSN-----------------AKFIELGALSRLTSLHIDIPEGEIMPSD-- 232 (623)
Q Consensus 174 ~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~-- 232 (623)
.+. .+++|+.|++++|.+....++....... ..+..+ ..++|+.|++++|.+...+..
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTT
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHh
Confidence 343 4588999999998764322211000000 000000 124455555555554433222
Q ss_pred cccc--CccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCccc---
Q 036269 233 MSFQ--NLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLEN--- 307 (623)
Q Consensus 233 ~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--- 307 (623)
..++ +|+.|+++++.....++..+. ..+.++.+.+..+...+..|.++... ++|+.|++.++.....
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFA-------WLPQLEYFFLEYNNIQHLFSHSLHGL-FNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTT-------TCTTCCEEECCSCCBSEECTTTTTTC-TTCCEEECTTCBCCC----
T ss_pred hccCcCCCCEEECCCCCcCccCccccc-------CcccccEeeCCCCccCccChhhhcCC-CCccEEeccchhhhccccc
Confidence 2232 366666655543332221111 33455555555543332333333322 4555555544321100
Q ss_pred -cc---ccccccCccCccEEEEecccCceeecccccccccccccc----------------------------cceeecc
Q 036269 308 -IV---SDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLK----------------------------LEWLMIV 355 (623)
Q Consensus 308 -~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~----------------------------L~~L~l~ 355 (623)
.+ ....+..+++|++|+++++ .+..+... ....+++ |+.|+++
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~ 389 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT----TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred ccccccChhhcccCCCCCEEECCCC-ccCCCChh----HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence 00 0111233455555555554 23222211 2233444 4445544
Q ss_pred cCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCc
Q 036269 356 DNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSL 435 (623)
Q Consensus 356 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L 435 (623)
++. ++.+.... .+.+++|+.|++++| .+++.+|...+..+++|++|++++ +.++.+. +..+..+++|
T Consensus 390 ~n~-l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~--------~~~~~~~~~L 456 (680)
T 1ziw_A 390 KNK-ISKIESDA--FSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSY-NKYLQLT--------RNSFALVPSL 456 (680)
T ss_dssp TSC-CCEECTTT--TTTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCS-CSEEECC--------TTTTTTCTTC
T ss_pred CCC-CCeEChhh--hhCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCC-CCcceeC--------hhhhhcCccc
Confidence 443 22211111 235677777777774 444334433456677777777777 4455442 4455667888
Q ss_pred cEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccceeccccCC----CC
Q 036269 436 EKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTS----SP 511 (623)
Q Consensus 436 ~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~----~~ 511 (623)
++|++++| .++.+...+..+..+++|++|++++ ++++.+++..++.+++|++|++.+|....+. ....| ..
T Consensus 457 ~~L~l~~n-~l~~~~~~p~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~~~~~ 531 (680)
T 1ziw_A 457 QRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSN-NNIANINDDMLEGLEKLEILDLQHNNLARLW---KHANPGGPIYF 531 (680)
T ss_dssp CEEECTTS-CCBCTTCSSCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCGGGG---STTSTTSCCCT
T ss_pred ccchhccc-cccccccCCcccccCCCCCEEECCC-CCCCcCChhhhccccccCEEeCCCCCccccc---hhhccCCcchh
Confidence 88888877 3333333355667789999999998 4688887888889999999999988662221 11122 23
Q ss_pred CCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCcc
Q 036269 512 TPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDS 591 (623)
Q Consensus 512 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 591 (623)
+..+++|+.|++++| +++.+++ ..+.++++|++|+++++. ++.++.. ....+++|+.|+++++ .
T Consensus 532 ~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~~l~~L~~L~L~~N-~ 595 (680)
T 1ziw_A 532 LKGLSHLHILNLESN-GFDEIPV-EVFKDLFELKIIDLGLNN-LNTLPAS------------VFNNQVSLKSLNLQKN-L 595 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTT------------TTTTCTTCCEEECTTS-C
T ss_pred hcCCCCCCEEECCCC-CCCCCCH-HHcccccCcceeECCCCC-CCcCCHh------------HhCCCCCCCEEECCCC-c
Confidence 678899999999984 7777744 457889999999998876 7766531 2356789999999987 6
Q ss_pred cceecCCCCcceeecCCccEEEeccCC
Q 036269 592 LTCFCSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 592 l~~~~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
++.++. ... ...+++|++|++.++|
T Consensus 596 l~~~~~-~~~-~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 596 ITSVEK-KVF-GPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCBCCH-HHH-HHHHTTCSEEECTTCC
T ss_pred CCccCh-hHh-cccccccCEEEccCCC
Confidence 666654 221 1136899999988765
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-38 Score=344.14 Aligned_cols=521 Identities=17% Similarity=0.165 Sum_probs=387.9
Q ss_pred eecCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCccccc
Q 036269 20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~ 97 (623)
...+.++..+|. ...+++++|++++|.++.+++ .+ ++++|++|++++|.+..+++..|.++++|++|++++|.+.
T Consensus 17 ~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-- 93 (606)
T 3vq2_A 17 QCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-- 93 (606)
T ss_dssp ECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--
T ss_pred EccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc--
Confidence 344567888885 445899999999999998877 33 8999999999999999777666799999999999999994
Q ss_pred CCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCc--cccccccCCCccCEEeccCCCCCCcCchh
Q 036269 98 FSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVS--EIPVSFGRLGHLRLLDLTDCYNLELIPRG 173 (623)
Q Consensus 98 ~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~ 173 (623)
...|..+.++++|++|++++|. +..+ ..++++++|++|++++|.+. .+|..++++++|++|++++| .+..++..
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~ 171 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVN 171 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTT
T ss_pred ccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChh
Confidence 4447889999999999999999 8665 57899999999999999998 57999999999999999995 55556554
Q ss_pred hhhccccCc----EEEecccccccccccccccccccccccccCCCCccEEEeecCCCc--cCCCc-ccccCccEEEEEeC
Q 036269 174 VLSRLRKLE----ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE--IMPSD-MSFQNLTSFSITIG 246 (623)
Q Consensus 174 ~~~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~ 246 (623)
.++.+.+|+ .|++++|.+. .++.......+|+.|++++|... .++.. ..++.|+.+.+...
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPID------------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCC------------EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred hhhhhhccccccceeeccCCCcc------------eeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence 477777665 7999999873 33334444458999999998753 23333 67788888877655
Q ss_pred CCCCCCc-chhhhhhhhcccccccceeeeccc-cccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEE
Q 036269 247 GPEEVPL-SDFIEVFSRKFKKRCSRAMGLSQD-MRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLA 324 (623)
Q Consensus 247 ~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 324 (623)
....... ..+............++.+.+... ...+..|. +. .+++|+.|++.++.. .. ++.+ ..+++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~-~~-l~~l--~~~~~L~~L~ 313 (606)
T 3vq2_A 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FH-CLANVSAMSLAGVSI-KY-LEDV--PKHFKWQSLS 313 (606)
T ss_dssp CCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CG-GGTTCSEEEEESCCC-CC-CCCC--CTTCCCSEEE
T ss_pred ccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cc-cCCCCCEEEecCccc-hh-hhhc--cccccCCEEE
Confidence 4222110 001111111222224455555332 22223343 33 338999999998875 33 2333 6688999999
Q ss_pred EecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCccccc--chhHHHhcccc
Q 036269 325 IVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKIL--PSHLVQSFQNL 402 (623)
Q Consensus 325 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L 402 (623)
+++| .+..++ .. .+++|+.|+++++..+. .++.+.+++|+.|++++| .+++.. +. .+..+++|
T Consensus 314 l~~n-~l~~lp------~~-~l~~L~~L~l~~n~~~~-----~~~~~~l~~L~~L~ls~n-~l~~~~~~~~-~~~~~~~L 378 (606)
T 3vq2_A 314 IIRC-QLKQFP------TL-DLPFLKSLTLTMNKGSI-----SFKKVALPSLSYLDLSRN-ALSFSGCCSY-SDLGTNSL 378 (606)
T ss_dssp EESC-CCSSCC------CC-CCSSCCEEEEESCSSCE-----ECCCCCCTTCCEEECCSS-CEEEEEECCH-HHHCCSCC
T ss_pred cccc-cCcccc------cC-CCCccceeeccCCcCcc-----chhhccCCCCCEEECcCC-ccCCCcchhh-hhccCCcc
Confidence 9999 445554 22 68999999999996443 235568899999999995 555432 44 37899999
Q ss_pred ceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCccc
Q 036269 403 QRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLG 482 (623)
Q Consensus 403 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~ 482 (623)
++|++++ +.++.+ +..+..+++|++|++++|. ++.+.. ...+..+++|++|++++| .++...|..+.
T Consensus 379 ~~L~L~~-n~l~~~---------~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 445 (606)
T 3vq2_A 379 RHLDLSF-NGAIIM---------SANFMGLEELQHLDFQHST-LKRVTE-FSAFLSLEKLLYLDISYT-NTKIDFDGIFL 445 (606)
T ss_dssp CEEECCS-CSEEEE---------CCCCTTCTTCCEEECTTSE-EESTTT-TTTTTTCTTCCEEECTTS-CCEECCTTTTT
T ss_pred cEeECCC-Cccccc---------hhhccCCCCCCeeECCCCc-cCCccC-hhhhhccccCCEEECcCC-CCCccchhhhc
Confidence 9999999 567766 6667789999999999994 443311 134567999999999996 56777788999
Q ss_pred Ccccchhhhhhcccccccceeccc-cCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcC
Q 036269 483 KKAAAEEMVLYRNRRDQIHIHATT-STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMN 561 (623)
Q Consensus 483 ~~~~L~~l~~~~~~~~~l~~~~~~-~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~ 561 (623)
.+++|++|++.+|.. .+ ..|..+..+++|+.|++++| +++.+++ ..+.++++|++|++++|. ++.+...
T Consensus 446 ~l~~L~~L~l~~n~l-------~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~ 515 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSF-------KDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDSS 515 (606)
T ss_dssp TCTTCCEEECTTCEE-------GGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEGG
T ss_pred CCCCCCEEECCCCcC-------CCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCHH
Confidence 999999999999843 33 35778899999999999996 6777654 347889999999999997 6655211
Q ss_pred CCCcccCcCCCcceeecCcccceecccCcccceecCCCCcceeecC-CccEEEeccCC
Q 036269 562 DEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFL-ALEALQIIDCP 618 (623)
Q Consensus 562 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~L~~L~i~~c~ 618 (623)
....+++|++|+++++. ++.++. +.. .++ +|++|++.++|
T Consensus 516 ------------~~~~l~~L~~L~l~~N~-l~~~p~-~~~---~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 516 ------------HYNQLYSLSTLDCSFNR-IETSKG-ILQ---HFPKSLAFFNLTNNS 556 (606)
T ss_dssp ------------GTTTCTTCCEEECTTSC-CCCEES-CGG---GSCTTCCEEECCSCC
T ss_pred ------------HccCCCcCCEEECCCCc-CcccCH-hHh---hhcccCcEEEccCCC
Confidence 45678899999999985 788877 432 355 69999998875
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.6e-38 Score=340.23 Aligned_cols=530 Identities=16% Similarity=0.152 Sum_probs=370.8
Q ss_pred ecCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccC
Q 036269 21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLF 98 (623)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~ 98 (623)
..+.++..+|. ...+.+++|++++|.++.+++ .+ ++++|++|++++|.+..+.+..|.++++|++|++++|.+. .
T Consensus 19 c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~ 95 (606)
T 3t6q_A 19 CENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI--F 95 (606)
T ss_dssp CTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS--E
T ss_pred CCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc--c
Confidence 33456777773 345789999999999998854 34 8999999999999998766666799999999999999985 4
Q ss_pred CCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhh
Q 036269 99 SLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVL 175 (623)
Q Consensus 99 ~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~ 175 (623)
..|..+..+++|++|++++|. +..+ ..++++++|++|++++|.+..++ ..+..+++|++|++++ +.+..++.+.+
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~ 173 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDM 173 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHH
T ss_pred cChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhh
Confidence 557788999999999999998 8776 67889999999999999998652 3444599999999999 45666665558
Q ss_pred hccccCc--EEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCC
Q 036269 176 SRLRKLE--ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVP 252 (623)
Q Consensus 176 ~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~ 252 (623)
+.+++|+ .|++++|.+. ..+.......+|+.|+++++. .++.. ..+.++....+.........
T Consensus 174 ~~l~~L~~l~L~l~~n~l~------------~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIA------------GIEPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp HTTTTCCSEEEECTTCCCC------------EECTTTTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSC
T ss_pred hhhcccceeEEecCCCccC------------ccChhHhhhccccccccCCch--hHHHHhhhccccchhheechhhcccc
Confidence 8999999 8899998873 223333445678899988775 12222 33344433334333222211
Q ss_pred cchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCce
Q 036269 253 LSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK 332 (623)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 332 (623)
...+....+.......++.+.+..+... .++......+++|++|+++++.. ..++..+ ..+++|++|++++| .++
T Consensus 240 ~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l--~~l~~L~~L~l~~n-~l~ 314 (606)
T 3t6q_A 240 DEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHL-SELPSGL--VGLSTLKKLVLSAN-KFE 314 (606)
T ss_dssp CCCCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCC-SCCCSSC--CSCTTCCEEECTTC-CCS
T ss_pred ccccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCcc-CCCChhh--cccccCCEEECccC-CcC
Confidence 1122222222223336677777765443 34333222238999999998863 4444443 67899999999999 555
Q ss_pred eecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCccccc--chhHHHhccccceEEEecc
Q 036269 333 YLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKIL--PSHLVQSFQNLQRLRVEGC 410 (623)
Q Consensus 333 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c 410 (623)
.+... ....+++|+.|+++++.....+..+. .+.+++|+.|++++| .+++.. +. .+..+++|++|++++
T Consensus 315 ~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~-~~~~l~~L~~L~l~~- 385 (606)
T 3t6q_A 315 NLCQI----SASNFPSLTHLSIKGNTKRLELGTGC--LENLENLRELDLSHD-DIETSDCCNL-QLRNLSHLQSLNLSY- 385 (606)
T ss_dssp BGGGG----CGGGCTTCSEEECCSCSSCCBCCSST--TTTCTTCCEEECCSS-CCCEEEESTT-TTTTCTTCCEEECCS-
T ss_pred cCchh----hhhccCcCCEEECCCCCcccccchhh--hhccCcCCEEECCCC-ccccccCcch-hcccCCCCCEEECCC-
Confidence 54332 45678999999999986322221111 346899999999985 454432 33 367899999999999
Q ss_pred ccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhh
Q 036269 411 ELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEM 490 (623)
Q Consensus 411 ~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l 490 (623)
+.++.+. +..+..+++|++|++++|. ++.. ..+..+..+++|++|++++| .++..+|..++.+++|++|
T Consensus 386 n~l~~~~--------~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 386 NEPLSLK--------TEAFKECPQLELLDLAFTR-LKVK-DAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CSCEEEC--------TTTTTTCTTCSEEECTTCC-EECC-TTCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEE
T ss_pred CcCCcCC--------HHHhcCCccCCeEECCCCc-CCCc-ccchhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEE
Confidence 6666653 5567788999999999984 4432 11223567899999999995 5677778888999999999
Q ss_pred hhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcC
Q 036269 491 VLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQG 570 (623)
Q Consensus 491 ~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~ 570 (623)
++.+|.... ..-..+..+..+++|+.|++++| +++.+++ ..+..+++|++|++++|. ++.....
T Consensus 455 ~L~~n~l~~----~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~--------- 518 (606)
T 3t6q_A 455 NLQGNHFPK----GNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHNR-LTSSSIE--------- 518 (606)
T ss_dssp ECTTCBCGG----GEECSSCGGGGCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCGGGGG---------
T ss_pred ECCCCCCCc----cccccchhhccCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCCCc-cCcCChh---------
Confidence 999985411 00122345678999999999996 6777654 347889999999999997 6555321
Q ss_pred CCcceeecCcccceecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269 571 ASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 571 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
....++.| .|+++++ .++.++. .. ...+++|+.|+++++|
T Consensus 519 ---~l~~l~~L-~L~L~~N-~l~~~~~-~~--~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 519 ---ALSHLKGI-YLNLASN-HISIILP-SL--LPILSQQRTINLRQNP 558 (606)
T ss_dssp ---GGTTCCSC-EEECCSS-CCCCCCG-GG--HHHHHTSSEEECTTCC
T ss_pred ---HhCccccc-EEECcCC-cccccCH-hh--cccCCCCCEEeCCCCC
Confidence 34567788 8899887 4444433 21 2347899999999876
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-38 Score=353.65 Aligned_cols=369 Identities=18% Similarity=0.167 Sum_probs=171.3
Q ss_pred CCCCCCcEEEcccCCcccccc-c---C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhcc
Q 036269 33 NTFEDLTGISLMFNDIHEVHE-G---L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFL 107 (623)
Q Consensus 33 ~~~~~l~~L~l~~~~~~~l~~-~---~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l 107 (623)
..+++|++|++++|.++.... . . .+++|++|++++|.+....+ +..+++|++|++++|.+. +.+|. +.++
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~--~~~~~-l~~l 222 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS--TGIPF-LGDC 222 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCC--SCCCB-CTTC
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCC--CCCcc-cccC
Confidence 355677777777777654332 1 2 45556666665555543222 245555555555555553 23333 5555
Q ss_pred ccCcEEeccCCcCCCC-c-ccccCCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEE
Q 036269 108 INLRTLSLHDCQHFGD-L-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEEL 184 (623)
Q Consensus 108 ~~L~~L~l~~~~~l~~-i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L 184 (623)
++|++|++++|. +.. + ..++++++|++|++++|.+. .+|.. .+++|++|++++|...+.+|..+...+++|++|
T Consensus 223 ~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 223 SALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp CSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred CCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence 555555555555 432 2 34555555555555555554 22221 445555555555333334444322223455555
Q ss_pred EecccccccccccccccccccccccccCCCCccEEEeecCCCc-cCCCc--ccccCccEEEEEeCCCCCCCcchhhhhh-
Q 036269 185 YMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE-IMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVF- 260 (623)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~- 260 (623)
++++|.+. ...+..++.+++|+.|++++|.+. .+|.. ..+++|+.|+++.+......+..+....
T Consensus 300 ~Ls~n~l~-----------~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 300 DLSGNHFY-----------GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp ECCSSEEE-----------ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred ECcCCcCC-----------CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc
Confidence 55554441 223334444444444444444432 33322 3344444444444332211111111000
Q ss_pred -------------------hhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCcc
Q 036269 261 -------------------SRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELM 321 (623)
Q Consensus 261 -------------------~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 321 (623)
......+.++.+.+..+...+.+|.++... ++|+.|++++|......+..+ ..+++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~ 445 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSL--GSLSKLR 445 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCGGG--GGCTTCC
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccHHH--hcCCCCC
Confidence 000013345555555554444455544443 556666665554322222222 3455666
Q ss_pred EEEEecccCceeecccccccccccccccceeecccCcccccccccccC--CCcCCCccEEEEeecCCcccccchhHHHhc
Q 036269 322 FLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLP--AGCLSNVKRLDVRDCGSVLKILPSHLVQSF 399 (623)
Q Consensus 322 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 399 (623)
.|++++|.-...++. ....+++|+.|++++|. ++ +.+| .+.+++|+.|++++| .+++.+|.. +..+
T Consensus 446 ~L~L~~n~l~~~~p~-----~~~~l~~L~~L~L~~N~-l~----~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~-~~~l 513 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQ-----ELMYVKTLETLILDFND-LT----GEIPSGLSNCTNLNWISLSNN-RLTGEIPKW-IGRL 513 (768)
T ss_dssp EEECCSSCCCSCCCG-----GGGGCTTCCEEECCSSC-CC----SCCCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGC
T ss_pred EEECCCCcccCcCCH-----HHcCCCCceEEEecCCc-cc----CcCCHHHhcCCCCCEEEccCC-ccCCcCChH-HhcC
Confidence 666666621112221 23345566666666654 11 1122 234566666666663 344434443 5556
Q ss_pred cccceEEEeccccceeeeeccceeccccccccccCccEEecCCcc
Q 036269 400 QNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLP 444 (623)
Q Consensus 400 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 444 (623)
++|++|++++ +.++... |..+..+++|+.|++++|+
T Consensus 514 ~~L~~L~L~~-N~l~~~~--------p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 514 ENLAILKLSN-NSFSGNI--------PAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp TTCCEEECCS-SCCEEEC--------CGGGGGCTTCCEEECCSSE
T ss_pred CCCCEEECCC-CcccCcC--------CHHHcCCCCCCEEECCCCc
Confidence 6666666666 3443222 4455556666666666653
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.2e-37 Score=331.20 Aligned_cols=502 Identities=15% Similarity=0.140 Sum_probs=370.3
Q ss_pred CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269 37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116 (623)
Q Consensus 37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~ 116 (623)
.-++++.+++.++.+|.... +++++|++++|.+..++...|+++++|++|++++|.+. +..|.++.++++|++|+++
T Consensus 12 ~~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECT
T ss_pred CCCceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc--ccCHHHhhchhhcCEeECC
Confidence 34678999999999998664 78999999999999777766899999999999999994 3446678999999999999
Q ss_pred CCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCC-cCchhhhhccccCcEEEecccccc
Q 036269 117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~ 192 (623)
+|. +..+ ..++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus 89 ~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 89 GNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred CCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence 999 8666 67999999999999999999776 789999999999999965433 46765 899999999999999873
Q ss_pred cccccccccccccccccccCCCC----ccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhccccc
Q 036269 193 WQFENEDDSRSNAKFIELGALSR----LTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKR 267 (623)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~l~~----L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 267 (623)
...+..++.+++ +..+++++|.+..++.. ....+|+.++++++..... ..... . ...+
T Consensus 167 -----------~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~---~~~~~-~--~~l~ 229 (606)
T 3vq2_A 167 -----------TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN---IMKTC-L--QNLA 229 (606)
T ss_dssp -----------EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHH---HHHHH-H--HTTT
T ss_pred -----------ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchh---HHHHH-h--cccc
Confidence 233344544444 44899999998888776 4445899999998753210 00000 0 1233
Q ss_pred ccceeeecccc-----ccccchHHHHHHH--hhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccc
Q 036269 268 CSRAMGLSQDM-----RISALPSWIKNLL--LRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLER 340 (623)
Q Consensus 268 ~l~~l~l~~~~-----~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 340 (623)
.++.+.+.... .+..++......+ ..++.+++.....+....+.+ ..+++|+.++++++ .+..++
T Consensus 230 ~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~-~~~~l~----- 301 (606)
T 3vq2_A 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGV-SIKYLE----- 301 (606)
T ss_dssp TCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESC-CCCCCC-----
T ss_pred ccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccccc--ccCCCCCEEEecCc-cchhhh-----
Confidence 34443332211 1111111111000 246667775666666655553 67899999999999 555554
Q ss_pred cccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeecc
Q 036269 341 TLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIE 420 (623)
Q Consensus 341 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~ 420 (623)
....+++|+.|++.+|.. .. +|.-.+++|+.|++++|..+.. .+ +..+++|++|++++ +.++.+..
T Consensus 302 -~l~~~~~L~~L~l~~n~l-~~-----lp~~~l~~L~~L~l~~n~~~~~-~~---~~~l~~L~~L~ls~-n~l~~~~~-- 367 (606)
T 3vq2_A 302 -DVPKHFKWQSLSIIRCQL-KQ-----FPTLDLPFLKSLTLTMNKGSIS-FK---KVALPSLSYLDLSR-NALSFSGC-- 367 (606)
T ss_dssp -CCCTTCCCSEEEEESCCC-SS-----CCCCCCSSCCEEEEESCSSCEE-CC---CCCCTTCCEEECCS-SCEEEEEE--
T ss_pred -hccccccCCEEEcccccC-cc-----cccCCCCccceeeccCCcCccc-hh---hccCCCCCEEECcC-CccCCCcc--
Confidence 345678999999999973 33 3322789999999999866654 32 45789999999999 66665421
Q ss_pred ceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceecc-CcccCcccchhhhhhcccccc
Q 036269 421 RVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFP-ANLGKKAAAEEMVLYRNRRDQ 499 (623)
Q Consensus 421 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~-~~l~~~~~L~~l~~~~~~~~~ 499 (623)
.+..+..+++|++|++++|. ++.+ +..+..+++|++|++++| .+...+| ..+..+++|++|++.+|..
T Consensus 368 ----~~~~~~~~~~L~~L~L~~n~-l~~~---~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-- 436 (606)
T 3vq2_A 368 ----CSYSDLGTNSLRHLDLSFNG-AIIM---SANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNT-- 436 (606)
T ss_dssp ----CCHHHHCCSCCCEEECCSCS-EEEE---CCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCC--
T ss_pred ----hhhhhccCCcccEeECCCCc-cccc---hhhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCC--
Confidence 14456779999999999994 6665 456677999999999995 5666655 6788999999999999844
Q ss_pred cceeccccCCCCCCCCCCccEEEEecCCCcce-ecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeec
Q 036269 500 IHIHATTSTSSPTPSLGNLVSITIRGCGKLRN-LFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITF 578 (623)
Q Consensus 500 l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l 578 (623)
....|..+..+++|+.|++++| .++. ..+ ..+..+++|++|++++|. ++.++.. ....+
T Consensus 437 -----~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~------------~~~~l 496 (606)
T 3vq2_A 437 -----KIDFDGIFLGLTSLNTLKMAGN-SFKDNTLS-NVFANTTNLTFLDLSKCQ-LEQISWG------------VFDTL 496 (606)
T ss_dssp -----EECCTTTTTTCTTCCEEECTTC-EEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTT------------TTTTC
T ss_pred -----CccchhhhcCCCCCCEEECCCC-cCCCcchH-HhhccCCCCCEEECCCCc-CCccChh------------hhccc
Confidence 5556777889999999999996 4443 223 347889999999999997 6655321 35678
Q ss_pred CcccceecccCccccee-cCCCCcceeecCCccEEEeccCC
Q 036269 579 PSLFSIQLCLLDSLTCF-CSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 579 ~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
++|++|+++++. ++.+ +. .. ..+++|++|++++|+
T Consensus 497 ~~L~~L~Ls~N~-l~~~~~~-~~---~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 497 HRLQLLNMSHNN-LLFLDSS-HY---NQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTCCEEECCSSC-CSCEEGG-GT---TTCTTCCEEECTTSC
T ss_pred ccCCEEECCCCc-CCCcCHH-Hc---cCCCcCCEEECCCCc
Confidence 999999999984 4444 33 22 247999999999985
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.2e-36 Score=327.74 Aligned_cols=526 Identities=18% Similarity=0.170 Sum_probs=335.3
Q ss_pred CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269 38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117 (623)
Q Consensus 38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~ 117 (623)
.+.++.+++.++.+|.... +++++|++++|.+..++...|.++++|++|++++|.+. +..|..+.++++|++|++++
T Consensus 6 ~~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--KLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC--CCCTTHHHHCTTCCEEECCS
T ss_pred CCeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC--ccCHHHHhcccCcCEEECCC
Confidence 3578899999999997664 78999999999999888887899999999999999995 55677899999999999999
Q ss_pred CcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269 118 CQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ 194 (623)
Q Consensus 118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~ 194 (623)
|. +..+ ..++++++|++|++++|.++.+| ..++++++|++|++++|. +...+...+.++++|++|++++|.+.
T Consensus 83 n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-- 158 (680)
T 1ziw_A 83 NE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ-- 158 (680)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC--
T ss_pred Cc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccc--
Confidence 98 8777 35899999999999999999776 679999999999999964 44454444889999999999999873
Q ss_pred cccccccccccccccc--cCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccc
Q 036269 195 FENEDDSRSNAKFIEL--GALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSR 270 (623)
Q Consensus 195 ~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (623)
...+..+ ..+++|+.|++++|.+..++.. ..+.+|+.+.+..+... ...... .......+.++
T Consensus 159 ---------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~-~~~~l~~~~L~ 225 (680)
T 1ziw_A 159 ---------ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEK-LCLELANTSIR 225 (680)
T ss_dssp ---------CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH---HHHHHH-HHHHHTTSCCC
T ss_pred ---------ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC---hhhHHH-HHHHhhhcccc
Confidence 2222222 3568999999999987766554 56677777766544321 000000 00111235667
Q ss_pred eeeeccccccccchHHHHHHH-hhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccccccccccc
Q 036269 271 AMGLSQDMRISALPSWIKNLL-LRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKL 349 (623)
Q Consensus 271 ~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 349 (623)
.+.+..+...+..|.++.... ++|++|++++|... ...+. .+..+++|+.|+++++ .+..+... ....+++|
T Consensus 226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l~~L 298 (680)
T 1ziw_A 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGND-SFAWLPQLEYFFLEYN-NIQHLFSH----SLHGLFNV 298 (680)
T ss_dssp EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTT-TTTTCTTCCEEECCSC-CBSEECTT----TTTTCTTC
T ss_pred EEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcc-cccCcccccEeeCCCC-ccCccChh----hhcCCCCc
Confidence 777766554434444444331 23788888777532 22211 1255777888888777 44443322 34456677
Q ss_pred ceeecccCcccccccc------cccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccc------------
Q 036269 350 EWLMIVDNRNFVEICH------GQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCE------------ 411 (623)
Q Consensus 350 ~~L~l~~~~~l~~~~~------~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~------------ 411 (623)
+.|++.++..-..+.. .....+.+++|+.|++++| .+++..+ ..+..+++|++|++++|.
T Consensus 299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~ 376 (680)
T 1ziw_A 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFV 376 (680)
T ss_dssp CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhc
Confidence 7777765421100000 0111234566666666663 4444222 235566666666666532
Q ss_pred ---------------cceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCccee
Q 036269 412 ---------------LLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQV 476 (623)
Q Consensus 412 ---------------~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~ 476 (623)
.++.+. +..+..+++|+.|++++|.-...+. +..+..+++|++|++++| +++.+
T Consensus 377 ~~~~~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~ 445 (680)
T 1ziw_A 377 SLAHSPLHILNLTKNKISKIE--------SDAFSWLGHLEVLDLGLNEIGQELT--GQEWRGLENIFEIYLSYN-KYLQL 445 (680)
T ss_dssp GGTTSCCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECCSSCCEEECC--SGGGTTCTTCCEEECCSC-SEEEC
T ss_pred ccccCcCceEECCCCCCCeEC--------hhhhhCCCCCCEEeCCCCcCccccC--cccccCcccccEEecCCC-Cccee
Confidence 222221 3445567777777777774222221 123455677777777774 46666
Q ss_pred ccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchh
Q 036269 477 FPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQ 556 (623)
Q Consensus 477 ~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~ 556 (623)
.+..+..+++|+.|++.+|... ..+..|..+..+++|+.|++++| +++.+++ ..+.++++|++|++++|. ++
T Consensus 446 ~~~~~~~~~~L~~L~l~~n~l~-----~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~ 517 (680)
T 1ziw_A 446 TRNSFALVPSLQRLMLRRVALK-----NVDSSPSPFQPLRNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQHNN-LA 517 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCB-----CTTCSSCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CG
T ss_pred ChhhhhcCcccccchhcccccc-----ccccCCcccccCCCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCCCC-cc
Confidence 6666777777777777766331 11345666777888888888874 5666644 346777888888888776 55
Q ss_pred hhhcCC----------------------CCcccCcCCCcceeecCcccceecccCcccceecCCCCcceeecCCccEEEe
Q 036269 557 EIIMND----------------------EGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQI 614 (623)
Q Consensus 557 ~l~~~~----------------------~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i 614 (623)
.++... +.+..++ ......+++|+.|+++++ .++.++. +.. ..+++|+.|++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~--~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~--~~l~~L~~L~L 591 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP--VEVFKDLFELKIIDLGLN-NLNTLPA-SVF--NNQVSLKSLNL 591 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTT--TTCTTCCEEEC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC--HHHcccccCcceeECCCC-CCCcCCH-hHh--CCCCCCCEEEC
Confidence 542210 0011110 002345667777777664 5666654 321 23678888888
Q ss_pred ccC
Q 036269 615 IDC 617 (623)
Q Consensus 615 ~~c 617 (623)
+++
T Consensus 592 ~~N 594 (680)
T 1ziw_A 592 QKN 594 (680)
T ss_dssp TTS
T ss_pred CCC
Confidence 776
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-36 Score=326.45 Aligned_cols=509 Identities=17% Similarity=0.151 Sum_probs=362.6
Q ss_pred CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269 38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117 (623)
Q Consensus 38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~ 117 (623)
-++++.++..++.+|..+. +.+++|++++|.+..+++..|.++++|++|++++|.+. +..|..+.++++|++|++++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc--eeChhhccCccccCeeeCCC
Confidence 4567888888999987663 47999999999999776666799999999999999995 45678899999999999999
Q ss_pred CcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269 118 CQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ 194 (623)
Q Consensus 118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~ 194 (623)
|. +..+ ..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 91 n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-- 166 (606)
T 3t6q_A 91 NP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH-- 166 (606)
T ss_dssp CC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC--
T ss_pred Cc-ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccc--
Confidence 98 8665 5789999999999999999977 678999999999999995 455543212556999999999999873
Q ss_pred cccccccccccccccccCCCCcc--EEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccce
Q 036269 195 FENEDDSRSNAKFIELGALSRLT--SLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRA 271 (623)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (623)
...+..++.+++|+ .|++++|.+..+++. ....+|+.+++.++... .. .........+..
T Consensus 167 ---------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~-------~~-~~~~l~~~~l~~ 229 (606)
T 3t6q_A 167 ---------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL-------LV-IFKGLKNSTIQS 229 (606)
T ss_dssp ---------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH-------HH-HHHHTTTCEEEE
T ss_pred ---------ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH-------HH-Hhhhccccchhh
Confidence 33456678888898 899999988777655 55567888888765411 00 011111112222
Q ss_pred eeeccccc--cccchHHHH-HHH-hhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccccccccc
Q 036269 272 MGLSQDMR--ISALPSWIK-NLL-LRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLL 347 (623)
Q Consensus 272 l~l~~~~~--~~~~~~~~~-~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 347 (623)
+.+..... ...++.... ... .+++.|+++++.. ..+.+. .+..+++|++|+++++ .++.++. ....++
T Consensus 230 l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~l~~n-~l~~lp~-----~l~~l~ 301 (606)
T 3t6q_A 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF-FNISSN-TFHCFSGLQELDLTAT-HLSELPS-----GLVGLS 301 (606)
T ss_dssp EECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC-SSCCTT-TTTTCTTCSEEECTTS-CCSCCCS-----SCCSCT
T ss_pred eechhhccccccccChhHhchhhcCceeEEEeecCcc-CccCHH-HhccccCCCEEeccCC-ccCCCCh-----hhcccc
Confidence 22211100 001111111 110 2789999988764 333222 2367899999999999 6666654 345688
Q ss_pred ccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceecccc
Q 036269 348 KLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKE 427 (623)
Q Consensus 348 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~ 427 (623)
+|++|+++++. +..... ...+.+++|+.|++++|..... ++...+..+++|++|++++ +.++.+.. .+.
T Consensus 302 ~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~-n~l~~~~~------~~~ 370 (606)
T 3t6q_A 302 TLKKLVLSANK-FENLCQ--ISASNFPSLTHLSIKGNTKRLE-LGTGCLENLENLRELDLSH-DDIETSDC------CNL 370 (606)
T ss_dssp TCCEEECTTCC-CSBGGG--GCGGGCTTCSEEECCSCSSCCB-CCSSTTTTCTTCCEEECCS-SCCCEEEE------STT
T ss_pred cCCEEECccCC-cCcCch--hhhhccCcCCEEECCCCCcccc-cchhhhhccCcCCEEECCC-CccccccC------cch
Confidence 99999999986 333211 1234789999999999644433 5555577899999999999 66665521 033
Q ss_pred ccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceec-cCcccCcccchhhhhhcccccccceeccc
Q 036269 428 ETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVF-PANLGKKAAAEEMVLYRNRRDQIHIHATT 506 (623)
Q Consensus 428 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~-~~~l~~~~~L~~l~~~~~~~~~l~~~~~~ 506 (623)
.+..+++|++|++++|. ++.+. +..+..+++|++|++++| .++... +..++.+++|++|++.+|.. ..
T Consensus 371 ~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-------~~ 439 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNE-PLSLK--TEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLL-------DI 439 (606)
T ss_dssp TTTTCTTCCEEECCSCS-CEEEC--TTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCC-------BT
T ss_pred hcccCCCCCEEECCCCc-CCcCC--HHHhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCcc-------CC
Confidence 56778999999999984 44331 345567899999999995 555543 44588899999999999844 45
Q ss_pred cCCCCCCCCCCccEEEEecCCCcce-ecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCccccee
Q 036269 507 STSSPTPSLGNLVSITIRGCGKLRN-LFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQ 585 (623)
Q Consensus 507 ~~~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 585 (623)
..|..+..+++|++|++++|.--.. ++....+..+++|++|++++|. ++.+... ....+++|++|+
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~------------~~~~l~~L~~L~ 506 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQH------------AFTSLKMMNHVD 506 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTT------------TTTTCTTCCEEE
T ss_pred cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChh------------hhccccCCCEEE
Confidence 5567788899999999999653321 2223457889999999999997 6655321 456789999999
Q ss_pred cccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269 586 LCLLDSLTCFCSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 586 l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
++++. ++.... .. ...+++| +|++++|.
T Consensus 507 Ls~N~-l~~~~~-~~--l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 507 LSHNR-LTSSSI-EA--LSHLKGI-YLNLASNH 534 (606)
T ss_dssp CCSSC-CCGGGG-GG--GTTCCSC-EEECCSSC
T ss_pred CCCCc-cCcCCh-hH--hCccccc-EEECcCCc
Confidence 99984 444432 11 2246788 89988874
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-36 Score=321.32 Aligned_cols=501 Identities=18% Similarity=0.182 Sum_probs=356.5
Q ss_pred eecCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCccccc
Q 036269 20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~ 97 (623)
...+.++..+|. ...+.+++|++++|.++.+++. + .+++|++|++++|.+..+++..|.++++|++|++++|.+.
T Consensus 13 ~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-- 89 (570)
T 2z63_A 13 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-- 89 (570)
T ss_dssp ECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--
T ss_pred EeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC--
Confidence 334456777774 4457899999999999988753 3 8999999999999998887777899999999999999984
Q ss_pred CCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcc--ccccccCCCccCEEeccCCCCCCcCchh
Q 036269 98 FSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCYNLELIPRG 173 (623)
Q Consensus 98 ~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~~ 173 (623)
...|..+..+++|++|++++|. +..+ ..++++++|++|++++|.+.. +|..++++++|++|++++| .+..++..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~ 167 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT 167 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGG
T ss_pred ccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHH
Confidence 3344678999999999999998 8776 358999999999999999985 7899999999999999994 55666555
Q ss_pred hhhccccC----cEEEecccccccccccccccccccccccccCCCCccEEEeecCCC--ccCCCc-ccccCccEEEEEeC
Q 036269 174 VLSRLRKL----EELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG--EIMPSD-MSFQNLTSFSITIG 246 (623)
Q Consensus 174 ~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~-~~~~~L~~L~l~~~ 246 (623)
.++.+.+| +.+++++|.+.. ..+..+... +|+.|++++|.. ..++.. ..++.++...+...
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~-----------~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 235 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNF-----------IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCE-----------ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred HccchhccchhhhhcccCCCCcee-----------cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence 58888888 899999998732 223334433 799999988742 222222 45555655554432
Q ss_pred CCCCCCc-chhhhhhhhcccccccceeeeccc-cccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEE
Q 036269 247 GPEEVPL-SDFIEVFSRKFKKRCSRAMGLSQD-MRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLA 324 (623)
Q Consensus 247 ~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 324 (623)
....... ..+....+.......+..+.+... ...+..+.++... ++|+.|+++++.. ..+...+ ..+ +|++|+
T Consensus 236 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l-~~l~~~~--~~~-~L~~L~ 310 (570)
T 2z63_A 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTI-ERVKDFS--YNF-GWQHLE 310 (570)
T ss_dssp ECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEE-CSCCBCC--SCC-CCSEEE
T ss_pred cccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCc-CcccEEEecCccc-hhhhhhh--ccC-CccEEe
Confidence 2110000 011111111112223344444433 2222344444444 8899999988763 3333333 345 899999
Q ss_pred EecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCccccc--chhHHHhcccc
Q 036269 325 IVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKIL--PSHLVQSFQNL 402 (623)
Q Consensus 325 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L 402 (623)
+++| .+..++ ...+++|+.|++.++.. ...++...+++|+.|++++| .++... +. .+..+++|
T Consensus 311 l~~n-~~~~l~-------~~~l~~L~~L~l~~n~~-----~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~~~~~~L 375 (570)
T 2z63_A 311 LVNC-KFGQFP-------TLKLKSLKRLTFTSNKG-----GNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQ-SDFGTTSL 375 (570)
T ss_dssp EESC-BCSSCC-------BCBCSSCCEEEEESCBS-----CCBCCCCBCTTCCEEECCSS-CCBEEEEEEH-HHHTCSCC
T ss_pred eccC-cccccC-------cccccccCEEeCcCCcc-----ccccccccCCCCCEEeCcCC-ccCccccccc-cccccCcc
Confidence 9999 454443 24588999999999873 23344467899999999985 454422 33 37889999
Q ss_pred ceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCccc
Q 036269 403 QRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLG 482 (623)
Q Consensus 403 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~ 482 (623)
++|++++ +.++.+ +..+..+++|++|++++|. ++.+.. ...+..+++|++|++++| .+...+|..+.
T Consensus 376 ~~L~l~~-n~l~~~---------~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 442 (570)
T 2z63_A 376 KYLDLSF-NGVITM---------SSNFLGLEQLEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHT-HTRVAFNGIFN 442 (570)
T ss_dssp CEEECCS-CSEEEE---------EEEEETCTTCCEEECTTSE-EESCTT-SCTTTTCTTCCEEECTTS-CCEECCTTTTT
T ss_pred CEEECCC-Cccccc---------cccccccCCCCEEEccCCc-cccccc-hhhhhcCCCCCEEeCcCC-cccccchhhhh
Confidence 9999999 667666 3346789999999999984 443211 134567899999999996 56777788889
Q ss_pred CcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCC
Q 036269 483 KKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMND 562 (623)
Q Consensus 483 ~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 562 (623)
.+++|++|++.+|.. .....|..+..+++|+.|++++| +++.+.+ ..+..+++|++|++++|. ++.++..
T Consensus 443 ~l~~L~~L~l~~n~l------~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~- 512 (570)
T 2z63_A 443 GLSSLEVLKMAGNSF------QENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMASNQ-LKSVPDG- 512 (570)
T ss_dssp TCTTCCEEECTTCEE------GGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCCTT-
T ss_pred cCCcCcEEECcCCcC------ccccchhhhhcccCCCEEECCCC-ccccCCh-hhhhcccCCCEEeCCCCc-CCCCCHH-
Confidence 999999999998833 11356778889999999999996 5666644 346789999999999986 7666431
Q ss_pred CCcccCcCCCcceeecCcccceecccCcc
Q 036269 563 EGEVGLQGASTEKITFPSLFSIQLCLLDS 591 (623)
Q Consensus 563 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 591 (623)
....+++|+.|++++++-
T Consensus 513 -----------~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 513 -----------IFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp -----------TTTTCTTCCEEECCSSCB
T ss_pred -----------HhhcccCCcEEEecCCcc
Confidence 345778999999998653
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-36 Score=324.64 Aligned_cols=487 Identities=18% Similarity=0.186 Sum_probs=234.7
Q ss_pred EcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCC
Q 036269 42 SLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHF 121 (623)
Q Consensus 42 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l 121 (623)
+.+++.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++|.+. +..|..+..+++|++|++++|. +
T Consensus 11 ~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~-l 86 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDNH-L 86 (549)
T ss_dssp ECTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSC-C
T ss_pred ECCCCccccccccCC-CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC--ccChhhccccccCCEEECCCCc-c
Confidence 444455555554332 45555555555555443333455555566665555552 2223445555556666665555 5
Q ss_pred CCc--ccccCCcCCcEEEcCCCCCcc--ccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccc
Q 036269 122 GDL--SLIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFEN 197 (623)
Q Consensus 122 ~~i--~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~ 197 (623)
..+ ..++++++|++|++++|.++. .|..++++++|++|++++|..++.+|...+.++++|++|++++|.+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 161 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR----- 161 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----
Confidence 443 235555556666666555552 24455556666666665544455555333555566666666555542
Q ss_pred ccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeec
Q 036269 198 EDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLS 275 (623)
Q Consensus 198 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 275 (623)
...+..++.+++|+.|++++|....++.. ..+++|+.|+++++.....+..... .....+.++.+.+.
T Consensus 162 ------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 162 ------NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP----VDEVSSPMKKLAFR 231 (549)
T ss_dssp ------EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCS----SCCCCCCCCEEEEE
T ss_pred ------ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccc----hhhhhhcccceecc
Confidence 23344555555566666655554444433 3355566666555543221100000 00011122222222
Q ss_pred cccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccc--cccccccccccceee
Q 036269 276 QDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSL--ERTLRVTLLKLEWLM 353 (623)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~~~~L~~L~ 353 (623)
.+...+..+..+... ...+++|+.+++++| .+..+.... .......+++|+.|.
T Consensus 232 ~n~l~~~~~~~l~~~-----------------------~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 232 GSVLTDESFNELLKL-----------------------LRYILELSEVEFDDC-TLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp SCEEEHHHHHHHHGG-----------------------GGGCTTCCEEEEESC-EEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred ccccchhHHHHHHHH-----------------------hhhhccccccccccc-cccccccccccchhhhhhhccccccc
Confidence 221111111111110 022344555555544 121111000 000123344555555
Q ss_pred cccCcccccc-cccccC--CCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccc
Q 036269 354 IVDNRNFVEI-CHGQLP--AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETE 430 (623)
Q Consensus 354 l~~~~~l~~~-~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~ 430 (623)
+.++. +..+ ....++ ...+++|+.|++++| .++. +|......+++|++|++++ +.++...... +..+.
T Consensus 288 l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~-ip~~~~~~l~~L~~L~Ls~-N~l~~~~~~~-----~~~~~ 358 (549)
T 2z81_A 288 IRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFL-VPCSFSQHLKSLEFLDLSE-NLMVEEYLKN-----SACKG 358 (549)
T ss_dssp EESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCC-CCHHHHHHCTTCCEEECCS-SCCCHHHHHH-----HTCTT
T ss_pred ccccc-cchhhhcccchhhhhhcccceEEEeccC-cccc-CCHHHHhcCccccEEEccC-Cccccccccc-----hhhhh
Confidence 55443 1110 000000 012356777777764 3443 5555445677777777777 4444321000 11234
Q ss_pred cccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccceeccccCCC
Q 036269 431 LFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSS 510 (623)
Q Consensus 431 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~ 510 (623)
.+++|++|++++| .++.+...+..+..+++|++|++++| +++.+ |..++.+++|++|++.+|.... +|.
T Consensus 359 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~~L~~L~Ls~N~l~~--------l~~ 427 (549)
T 2z81_A 359 AWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPM-PDSCQWPEKMRFLNLSSTGIRV--------VKT 427 (549)
T ss_dssp SSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCC-CSCCCCCTTCCEEECTTSCCSC--------CCT
T ss_pred ccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccC-ChhhcccccccEEECCCCCccc--------ccc
Confidence 5677777777776 44443211122445677777777774 55544 5566666777777777664411 111
Q ss_pred CCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCc
Q 036269 511 PTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLD 590 (623)
Q Consensus 511 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 590 (623)
. ..++|+.|++++| +++.++ ..+++|++|++++|. ++.++ ....+++|+.|+++++
T Consensus 428 ~--~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N~-l~~ip--------------~~~~l~~L~~L~Ls~N- 483 (549)
T 2z81_A 428 C--IPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRNK-LKTLP--------------DASLFPVLLVMKISRN- 483 (549)
T ss_dssp T--SCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSSCC--------------CGGGCTTCCEEECCSS-
T ss_pred h--hcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCCc-cCcCC--------------CcccCccCCEEecCCC-
Confidence 1 1256777777774 455542 356777777777775 65554 2234667777777775
Q ss_pred ccceecCCCCcceeecCCccEEEeccCC
Q 036269 591 SLTCFCSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
.++.++. +. ...+++|+.|++.+++
T Consensus 484 ~l~~~~~-~~--~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 484 QLKSVPD-GI--FDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCCCCT-TG--GGGCTTCCEEECCSSC
T ss_pred ccCCcCH-HH--HhcCcccCEEEecCCC
Confidence 4555443 21 1235677777776665
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.3e-35 Score=313.71 Aligned_cols=503 Identities=17% Similarity=0.163 Sum_probs=360.2
Q ss_pred CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269 38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117 (623)
Q Consensus 38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~ 117 (623)
.+.++-++..++.+|.... +++++|++++|.+..++...|.++++|++|++++|.+. +..|..+.++++|++|++++
T Consensus 9 ~~~~~c~~~~l~~ip~~l~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC-SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC--EECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCccccCCCcc-ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC--ccCcccccCchhCCEEeCcC
Confidence 4567777778888887552 57999999999999777666899999999999999984 33346789999999999999
Q ss_pred CcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCC-cCchhhhhccccCcEEEeccccccc
Q 036269 118 CQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCHW 193 (623)
Q Consensus 118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~ 193 (623)
|. +..+ ..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus 86 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~- 162 (570)
T 2z63_A 86 NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ- 162 (570)
T ss_dssp CC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCC-
T ss_pred Cc-CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccc-
Confidence 98 8766 578999999999999999998875 69999999999999954333 35765 899999999999999873
Q ss_pred ccccccccccccccccccCCCCc----cEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccc
Q 036269 194 QFENEDDSRSNAKFIELGALSRL----TSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC 268 (623)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (623)
...+..++.+++| +.+++++|.+..++.. ....+|+.+++..+..... .+... . .....
T Consensus 163 ----------~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~-~--~~l~~ 226 (570)
T 2z63_A 163 ----------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN---VMKTC-I--QGLAG 226 (570)
T ss_dssp ----------EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTT---HHHHH-H--HTTTT
T ss_pred ----------eecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccccccc---chhhh-h--cCccc
Confidence 2334556666667 8999999998777655 3444799999987642211 01110 0 01122
Q ss_pred cceeeecc-----ccccccchHHHHHHH--hhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccc
Q 036269 269 SRAMGLSQ-----DMRISALPSWIKNLL--LRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERT 341 (623)
Q Consensus 269 l~~l~l~~-----~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 341 (623)
++...+.. ...+..++......+ -.++.+++.++..+....+.. ...+++|+.|+++++ .++.++.
T Consensus 227 l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~-~l~~l~~----- 299 (570)
T 2z63_A 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSV-TIERVKD----- 299 (570)
T ss_dssp CEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESC-EECSCCB-----
T ss_pred cceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCc-cchhhhh-----
Confidence 22222211 011111221111111 235666776664333333222 256899999999999 5555543
Q ss_pred ccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccc
Q 036269 342 LRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIER 421 (623)
Q Consensus 342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~ 421 (623)
....+ +|+.|++.++. + ..+|.+.+++|+.|++++|.. ....+. ..+++|++|++++ +.++.+...
T Consensus 300 ~~~~~-~L~~L~l~~n~-~-----~~l~~~~l~~L~~L~l~~n~~-~~~~~~---~~~~~L~~L~l~~-n~l~~~~~~-- 365 (570)
T 2z63_A 300 FSYNF-GWQHLELVNCK-F-----GQFPTLKLKSLKRLTFTSNKG-GNAFSE---VDLPSLEFLDLSR-NGLSFKGCC-- 365 (570)
T ss_dssp CCSCC-CCSEEEEESCB-C-----SSCCBCBCSSCCEEEEESCBS-CCBCCC---CBCTTCCEEECCS-SCCBEEEEE--
T ss_pred hhccC-CccEEeeccCc-c-----cccCcccccccCEEeCcCCcc-cccccc---ccCCCCCEEeCcC-CccCccccc--
Confidence 23345 89999999987 2 245667889999999999654 333443 5789999999999 666654210
Q ss_pred eeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceecc-CcccCcccchhhhhhccccccc
Q 036269 422 VNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFP-ANLGKKAAAEEMVLYRNRRDQI 500 (623)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~-~~l~~~~~L~~l~~~~~~~~~l 500 (623)
+..+..+++|++|++++| .++.+ +..+..+++|++|++++| .+...+| ..+..+++|++|++.+|..
T Consensus 366 ----~~~~~~~~~L~~L~l~~n-~l~~~---~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l--- 433 (570)
T 2z63_A 366 ----SQSDFGTTSLKYLDLSFN-GVITM---SSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT--- 433 (570)
T ss_dssp ----EHHHHTCSCCCEEECCSC-SEEEE---EEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCC---
T ss_pred ----cccccccCccCEEECCCC-ccccc---cccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcc---
Confidence 345567899999999999 45554 233677999999999995 5555544 5678899999999999844
Q ss_pred ceeccccCCCCCCCCCCccEEEEecCCCc-ceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecC
Q 036269 501 HIHATTSTSSPTPSLGNLVSITIRGCGKL-RNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFP 579 (623)
Q Consensus 501 ~~~~~~~~~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~ 579 (623)
....|..+..+++|+.|++++|.-. ..++ ..+..+++|++|++++|. ++.+... ....++
T Consensus 434 ----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~~~~~------------~~~~l~ 494 (570)
T 2z63_A 434 ----RVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQ-LEQLSPT------------AFNSLS 494 (570)
T ss_dssp ----EECCTTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCEECTT------------TTTTCT
T ss_pred ----cccchhhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCc-cccCChh------------hhhccc
Confidence 4556777889999999999997533 2444 347889999999999997 6655221 455789
Q ss_pred cccceecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269 580 SLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 580 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
+|++|++++| .++.++. +. ...+++|++|++++++
T Consensus 495 ~L~~L~l~~n-~l~~~~~-~~--~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 495 SLQVLNMASN-QLKSVPD-GI--FDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCCEEECCSS-CCSCCCT-TT--TTTCTTCCEEECCSSC
T ss_pred CCCEEeCCCC-cCCCCCH-HH--hhcccCCcEEEecCCc
Confidence 9999999998 5666654 32 2247999999999864
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=320.08 Aligned_cols=489 Identities=19% Similarity=0.188 Sum_probs=302.2
Q ss_pred eeecCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCccc
Q 036269 19 LIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVF 95 (623)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~ 95 (623)
....+.++..+|. ..+++++|++++|.++.+++ .+ .+++|++|++++|... .+++..|.++++|++|++++|.+.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 3445667888887 67999999999999988754 44 8999999999999655 675666799999999999999995
Q ss_pred ccCCCchhhhccccCcEEeccCCcCCCC-c-c--cccCCcCCcEEEcCCCCCccc--cccccCCCccCEEeccCCCCCCc
Q 036269 96 SLFSLPSSLSFLINLRTLSLHDCQHFGD-L-S--LIGELSLLEILDLSESDVSEI--PVSFGRLGHLRLLDLTDCYNLEL 169 (623)
Q Consensus 96 ~~~~lp~~~~~l~~L~~L~l~~~~~l~~-i-~--~~~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~~L~l~~~~~~~~ 169 (623)
...|..+.++++|++|++++|. +.+ + . .++++++|++|++++|.+..+ +..++++++|++|++++|.....
T Consensus 87 --~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 87 --FLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp --EECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred --ccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 4558889999999999999998 754 3 3 389999999999999999865 35799999999999999544444
Q ss_pred Cchhhhhcc--ccCcEEEecccccccccccccccccccccccccCCCC------ccEEEeecCCCc-cCCCc----cccc
Q 036269 170 IPRGVLSRL--RKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSR------LTSLHIDIPEGE-IMPSD----MSFQ 236 (623)
Q Consensus 170 l~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~-~~~~~----~~~~ 236 (623)
.+.. +..+ ++|+.|++++|.+. ...+..++.+.+ |+.|++++|.+. ..+.. ....
T Consensus 164 ~~~~-l~~l~~~~L~~L~L~~n~l~-----------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 164 CEHE-LEPLQGKTLSFFSLAANSLY-----------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp CSGG-GHHHHHCSSCCCEECCSBSC-----------CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred CHHH-cccccCCccceEECCCCccc-----------cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 4444 7777 89999999999874 233344444443 999999998643 22222 2234
Q ss_pred CccEEEEEeCCCCC-CCcc---hhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccc
Q 036269 237 NLTSFSITIGGPEE-VPLS---DFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDL 312 (623)
Q Consensus 237 ~L~~L~l~~~~~~~-~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 312 (623)
++..+.+..+.... +... ......+.....+.++.+.+..+...+..+..+..+ ++|+.|++++|.........
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~- 309 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEA- 309 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTT-
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHH-
Confidence 56666654221100 0000 011111112234567777777655433333333333 78888888877643222222
Q ss_pred cccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccc
Q 036269 313 AHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILP 392 (623)
Q Consensus 313 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 392 (623)
+..+++|+.|++++| .++.+... ....+++|+.|+++++. +..+.... ...+++|+.|++++| .++. ++
T Consensus 310 -~~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l~~L~~L~L~~N~-i~~~~~~~--~~~l~~L~~L~Ls~N-~l~~-i~ 378 (844)
T 3j0a_A 310 -FYGLDNLQVLNLSYN-LLGELYSS----NFYGLPKVAYIDLQKNH-IAIIQDQT--FKFLEKLQTLDLRDN-ALTT-IH 378 (844)
T ss_dssp -TTTCSSCCEEEEESC-CCSCCCSC----SCSSCTTCCEEECCSCC-CCCCCSSC--SCSCCCCCEEEEETC-CSCC-CS
T ss_pred -hcCCCCCCEEECCCC-CCCccCHH----HhcCCCCCCEEECCCCC-CCccChhh--hcCCCCCCEEECCCC-CCCc-cc
Confidence 256788888888888 45444322 45567888888888875 43322111 245788888888874 4543 22
Q ss_pred hhHHHhccccceEEEeccccceeeeeccc-----------ee--ccccccccccCccEEecCCccchhhcccCCCccccc
Q 036269 393 SHLVQSFQNLQRLRVEGCELLVSVFEIER-----------VN--IAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSL 459 (623)
Q Consensus 393 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~-----------~~--~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l 459 (623)
.+++|+.|++++ +.++.+..... .. .....+..+++|++|++++| .++.+.. ......+
T Consensus 379 -----~~~~L~~L~l~~-N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~~~ 450 (844)
T 3j0a_A 379 -----FIPSIPDIFLSG-NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSG-DQTPSEN 450 (844)
T ss_dssp -----SCCSCSEEEEES-CCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCS-SSSSCSC
T ss_pred -----CCCCcchhccCC-CCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-ccccccc-ccccccC
Confidence 257788888887 56655421000 00 00001224556666666655 3333211 1112235
Q ss_pred CCccEEEEEcCCCcc-----eeccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecc
Q 036269 460 HDLKKIRVVFCDELR-----QVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFT 534 (623)
Q Consensus 460 ~~L~~L~l~~C~~l~-----~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 534 (623)
++|+.|+++++ .++ ...+..+..+++|+.|++.+|.. .+..|..+..+++|+.|++++ ++++.+++
T Consensus 451 ~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~ 521 (844)
T 3j0a_A 451 PSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNYL-------NSLPPGVFSHLTALRGLSLNS-NRLTVLSH 521 (844)
T ss_dssp TTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHHH-------TTCCTTSSSSCCSCSEEEEES-CCCSSCCC
T ss_pred CccccccCCCC-ccccccccccchhhhcCcccccEEECCCCcc-------cccChhHccchhhhheeECCC-CCCCccCh
Confidence 56666666653 333 22233445556666666666533 333344455666666666666 35555544
Q ss_pred hhhhhccCCCCEEEEccCCchhhh
Q 036269 535 TSMVKSLVRLESLEVSRCPTLQEI 558 (623)
Q Consensus 535 ~~~~~~l~~L~~L~i~~c~~l~~l 558 (623)
.. +. ++|+.|++++|. ++.+
T Consensus 522 ~~-~~--~~L~~L~Ls~N~-l~~~ 541 (844)
T 3j0a_A 522 ND-LP--ANLEILDISRNQ-LLAP 541 (844)
T ss_dssp CC-CC--SCCCEEEEEEEC-CCCC
T ss_pred hh-hh--ccccEEECCCCc-CCCC
Confidence 31 11 566666666655 4443
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=318.54 Aligned_cols=504 Identities=17% Similarity=0.132 Sum_probs=351.1
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC-chhhhccccCcEEeccC
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-PSSLSFLINLRTLSLHD 117 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p~~~~~l~~L~~L~l~~ 117 (623)
+..+.+++.++.+|. -.+++++|++++|.+..+++..|.++++|++|++++|... ..+ |..+.++++|++|++++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEECCC
Confidence 567888899999998 4578999999999999665555799999999999999654 566 67799999999999999
Q ss_pred CcCCCCc--ccccCCcCCcEEEcCCCCCcc-cccc--ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccc
Q 036269 118 CQHFGDL--SLIGELSLLEILDLSESDVSE-IPVS--FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 192 (623)
|. +..+ ..++++++|++|++++|.+.. +|.. ++++++|++|++++|...+..+...++++++|++|++++|.+.
T Consensus 83 N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred Cc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 99 8665 689999999999999999984 5554 8999999999999965444334344899999999999999873
Q ss_pred cccccccccccccccccccCC--CCccEEEeecCCCccC-CCc-cccc------CccEEEEEeCCCCCCCcchhhhhhhh
Q 036269 193 WQFENEDDSRSNAKFIELGAL--SRLTSLHIDIPEGEIM-PSD-MSFQ------NLTSFSITIGGPEEVPLSDFIEVFSR 262 (623)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~-~~~-~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~~ 262 (623)
...+..++.+ ++|+.|++++|.+... +.. ..+. .|+.|+++.+.........+..
T Consensus 162 -----------~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---- 226 (844)
T 3j0a_A 162 -----------LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN---- 226 (844)
T ss_dssp -----------CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG----
T ss_pred -----------eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHh----
Confidence 3344555555 7899999999875432 222 3333 3899999887543322222221
Q ss_pred cccccccceeeecccc--------ccccc-hHHHHHH-HhhceeEeecccCCcccccccccccCccCccEEEEecccCce
Q 036269 263 KFKKRCSRAMGLSQDM--------RISAL-PSWIKNL-LLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK 332 (623)
Q Consensus 263 ~~~~~~l~~l~l~~~~--------~~~~~-~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 332 (623)
......+..+.+.... .+... +..+... .++++.|+++++......... +..+++|+.|++++| .+.
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n-~i~ 303 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV--FETLKDLKVLNLAYN-KIN 303 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC--SSSCCCCCEEEEESC-CCC
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh--hhcCCCCCEEECCCC-cCC
Confidence 1122334444433100 00000 1111111 268999999988743322222 367899999999999 666
Q ss_pred eecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEecccc
Q 036269 333 YLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCEL 412 (623)
Q Consensus 333 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 412 (623)
.+... ....+++|+.|+++++. +..+.... .+.+++|+.|++++| .++. ++...+..+++|+.|++++ +.
T Consensus 304 ~~~~~----~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~L~~N-~i~~-~~~~~~~~l~~L~~L~Ls~-N~ 373 (844)
T 3j0a_A 304 KIADE----AFYGLDNLQVLNLSYNL-LGELYSSN--FYGLPKVAYIDLQKN-HIAI-IQDQTFKFLEKLQTLDLRD-NA 373 (844)
T ss_dssp EECTT----TTTTCSSCCEEEEESCC-CSCCCSCS--CSSCTTCCEEECCSC-CCCC-CCSSCSCSCCCCCEEEEET-CC
T ss_pred CCChH----HhcCCCCCCEEECCCCC-CCccCHHH--hcCCCCCCEEECCCC-CCCc-cChhhhcCCCCCCEEECCC-CC
Confidence 55433 45668999999999986 43322222 347899999999995 6665 4443467899999999999 67
Q ss_pred ceeeeeccceeccccccccccCccEEecCCccchhhcccCC-------------------CcccccCCccEEEEEcCCCc
Q 036269 413 LVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGD-------------------TQFVSLHDLKKIRVVFCDEL 473 (623)
Q Consensus 413 l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~-------------------~~~~~l~~L~~L~l~~C~~l 473 (623)
++.+. .+++|+.|++++| .++.++... .....+++|++|+++++ ++
T Consensus 374 l~~i~-------------~~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l 438 (844)
T 3j0a_A 374 LTTIH-------------FIPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RF 438 (844)
T ss_dssp SCCCS-------------SCCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CC
T ss_pred CCccc-------------CCCCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-cc
Confidence 76542 2556666666655 333332110 11236889999999994 56
Q ss_pred ceeccC-cccCcccchhhhhhcccccccceecc--ccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEc
Q 036269 474 RQVFPA-NLGKKAAAEEMVLYRNRRDQIHIHAT--TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVS 550 (623)
Q Consensus 474 ~~~~~~-~l~~~~~L~~l~~~~~~~~~l~~~~~--~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~ 550 (623)
+.+.+. ....+++|+.|++.+|... .++ ...+..+..+++|+.|++++| +++.+++ ..+.++++|++|+++
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~----~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQ----LAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP-GVFSHLTALRGLSLN 512 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCS----SSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCT-TSSSSCCSCSEEEEE
T ss_pred cccccccccccCCccccccCCCCccc----cccccccchhhhcCcccccEEECCCC-cccccCh-hHccchhhhheeECC
Confidence 655333 3456889999999988551 122 223455778899999999995 7887755 456889999999999
Q ss_pred cCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269 551 RCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 551 ~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
+|. ++.++.. ...++|+.|+++++ .++.... . .+++|+.|++.+.|
T Consensus 513 ~N~-l~~l~~~--------------~~~~~L~~L~Ls~N-~l~~~~~-~-----~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 513 SNR-LTVLSHN--------------DLPANLEILDISRN-QLLAPNP-D-----VFVSLSVLDITHNK 558 (844)
T ss_dssp SCC-CSSCCCC--------------CCCSCCCEEEEEEE-CCCCCCS-C-----CCSSCCEEEEEEEC
T ss_pred CCC-CCccChh--------------hhhccccEEECCCC-cCCCCCh-h-----HhCCcCEEEecCCC
Confidence 996 8777531 12278999999986 4554433 2 25789999988754
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-32 Score=292.74 Aligned_cols=207 Identities=22% Similarity=0.270 Sum_probs=168.2
Q ss_pred CCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC
Q 036269 23 GVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL 100 (623)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l 100 (623)
++.+..+|. ...+++++|++++|.++.+++ .+ .+++|++|++++|.+..+++..|.++++|++|++++|.+ ..+
T Consensus 14 ~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l---~~~ 89 (549)
T 2z81_A 14 SRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL---SSL 89 (549)
T ss_dssp TSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC---CSC
T ss_pred CCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc---Ccc
Confidence 456777775 445899999999999988754 34 899999999999999977766679999999999999999 455
Q ss_pred ch-hhhccccCcEEeccCCcCCCCc---ccccCCcCCcEEEcCCCC-Ccccc-ccccCCCccCEEeccCCCCCCcCchhh
Q 036269 101 PS-SLSFLINLRTLSLHDCQHFGDL---SLIGELSLLEILDLSESD-VSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGV 174 (623)
Q Consensus 101 p~-~~~~l~~L~~L~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~-i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~ 174 (623)
+. .+..+++|++|++++|. +..+ ..++++++|++|++++|. +..+| ..+.++++|++|++++|...+..|..
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~- 167 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS- 167 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-
T ss_pred CHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-
Confidence 54 59999999999999998 8643 578999999999999998 66776 57999999999999996554455654
Q ss_pred hhccccCcEEEeccccccccccccccccccccccc-ccCCCCccEEEeecCCCccCC---C--cccccCccEEEEEeCC
Q 036269 175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIE-LGALSRLTSLHIDIPEGEIMP---S--DMSFQNLTSFSITIGG 247 (623)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~---~--~~~~~~L~~L~l~~~~ 247 (623)
+..+++|++|++.+|... ..+.. ++.+++|+.|++++|.+..++ . ...+++|+.+++.++.
T Consensus 168 l~~l~~L~~L~l~~n~~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESA------------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp TTTCSEEEEEEEECSBST------------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred hhccccCceEecccCccc------------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 899999999999988762 22222 356899999999999876542 1 1567889999998764
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.8e-31 Score=290.20 Aligned_cols=521 Identities=18% Similarity=0.161 Sum_probs=331.3
Q ss_pred CCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC
Q 036269 23 GVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL 100 (623)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l 100 (623)
+.++..+|. ...+.+++|++++|.++.+++. + ++++|++|+|++|.+..+++++|.++++|++|++++|.+ ..+
T Consensus 40 ~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l---~~l 115 (635)
T 4g8a_A 40 ELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---QSL 115 (635)
T ss_dssp TSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---CEE
T ss_pred CCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC---CCC
Confidence 456777773 3446899999999999988764 3 889999999999999888887789999999999999998 566
Q ss_pred ch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCc--cccccccCCCccCEEeccCCCCCCcCchhhh
Q 036269 101 PS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVS--EIPVSFGRLGHLRLLDLTDCYNLELIPRGVL 175 (623)
Q Consensus 101 p~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~ 175 (623)
|. .|.++++|++|++++|. +..+ ..++++++|++|++++|.++ .+|..++.+++|++|++++ +.+..++...+
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l 193 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDL 193 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGG
T ss_pred CHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccc
Confidence 64 57889999999999998 8777 35889999999999999887 4567888899999999998 45555554446
Q ss_pred hccccCc----EEEecccccccccccccccccccccccccCCCCccEEEeecCCCc-cCCCc--ccccCccEEEEEeCCC
Q 036269 176 SRLRKLE----ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE-IMPSD--MSFQNLTSFSITIGGP 248 (623)
Q Consensus 176 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~--~~~~~L~~L~l~~~~~ 248 (623)
..+.+++ .++++.|.+. .+.........++.+++..+... .+... ..+..++...+.....
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~------------~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMN------------FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCC------------EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred cchhhhhhhhhhhhcccCccc------------ccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 6655544 4666666652 22222333334566666665421 11111 3444555444443221
Q ss_pred CCCCc-chhhhhhhhcccccccceeeecc---ccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEE
Q 036269 249 EEVPL-SDFIEVFSRKFKKRCSRAMGLSQ---DMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLA 324 (623)
Q Consensus 249 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 324 (623)
..... ......... ....+....+.. ..........+. ...+++.+.+.++.... ...+ .....++.|+
T Consensus 262 ~~~~~l~~~~~~~~~--~~~~l~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~--~~~~--~~~~~L~~L~ 334 (635)
T 4g8a_A 262 RNEGNLEKFDKSALE--GLCNLTIEEFRLAYLDYYLDGIIDLFN-CLTNVSSFSLVSVTIER--VKDF--SYNFGWQHLE 334 (635)
T ss_dssp TTSCCCSCCCTTTTG--GGGGSEEEEEEEECCCSCEEECTTTTG-GGTTCSEEEEESCEEEE--CGGG--GSCCCCSEEE
T ss_pred ccccccccccccccc--cccchhhhhhhhhhhcccccchhhhhh-hhccccccccccccccc--cccc--ccchhhhhhh
Confidence 11000 000000000 111111111111 000111111111 12566667666554211 1111 3456788888
Q ss_pred EecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccce
Q 036269 325 IVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQR 404 (623)
Q Consensus 325 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 404 (623)
+.++ .+..+ ....++.|+.+.+.++.. ........+++|+.++++++..............+.+|++
T Consensus 335 l~~~-~~~~~-------~~~~l~~L~~l~l~~n~~-----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 401 (635)
T 4g8a_A 335 LVNC-KFGQF-------PTLKLKSLKRLTFTSNKG-----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKY 401 (635)
T ss_dssp EESC-EESSC-------CCCBCTTCCEEEEESCCS-----CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCE
T ss_pred cccc-cccCc-------CcccchhhhhcccccccC-----CCCcccccccccccchhhccccccccccccchhhhhhhhh
Confidence 8887 33222 223466777777776652 1223334678899999987433221122223667788999
Q ss_pred EEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCc
Q 036269 405 LRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKK 484 (623)
Q Consensus 405 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~ 484 (623)
+++.. +.+..+ +..+..+++|+.+++..+...... ....+..+++++.+++++ +.+....+..+..+
T Consensus 402 L~~~~-~~~~~~---------~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~l~~l~~l~ls~-n~l~~~~~~~~~~~ 468 (635)
T 4g8a_A 402 LDLSF-NGVITM---------SSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISH-THTRVAFNGIFNGL 468 (635)
T ss_dssp EECCS-CSEEEE---------CSCCTTCTTCCEEECTTSEEESTT--SSCTTTTCTTCCEEECTT-SCCEECCTTTTTTC
T ss_pred hhccc-cccccc---------cccccccccccchhhhhccccccc--cccccccccccccccccc-cccccccccccccc
Confidence 98888 444443 445567889999999887554432 123455688899999888 56777778888888
Q ss_pred ccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCC
Q 036269 485 AAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEG 564 (623)
Q Consensus 485 ~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 564 (623)
++++.|++.+|. ......|..+..+++|+.|++++| +++.+++ ..+.++++|++|++++|. |+.++..
T Consensus 469 ~~L~~L~Ls~N~------~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N~-l~~l~~~--- 536 (635)
T 4g8a_A 469 SSLEVLKMAGNS------FQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTF--- 536 (635)
T ss_dssp TTCCEEECTTCE------EGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CCBCCCG---
T ss_pred hhhhhhhhhhcc------cccccCchhhhhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCCc-CCCCChh---
Confidence 999999988873 233345667788899999999995 7888755 357889999999999986 7666421
Q ss_pred cccCcCCCcceeecCcccceecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269 565 EVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 565 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
....+++|+.|+++++ +++.+.. +.. ...+++|+.|+++++|
T Consensus 537 ---------~~~~l~~L~~L~Ls~N-~l~~~~~-~~l-~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 537 ---------PYKCLNSLQVLDYSLN-HIMTSKK-QEL-QHFPSSLAFLNLTQND 578 (635)
T ss_dssp ---------GGTTCTTCCEEECTTS-CCCBCCS-SCT-TCCCTTCCEEECTTCC
T ss_pred ---------HHhCCCCCCEEECCCC-cCCCCCH-HHH-HhhhCcCCEEEeeCCC
Confidence 3456789999999886 5555544 222 1113689999997654
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=284.05 Aligned_cols=460 Identities=15% Similarity=0.118 Sum_probs=289.1
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC 118 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~ 118 (623)
++++++++.++.+|..+. ++|++|++++|.+..+++..|.++++|++|++++|.+. +..|..+..+++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC--EEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccC--CcChHHhhcccCCCEEecCCC
Confidence 679999999999997665 89999999999999888777899999999999999994 444778999999999999999
Q ss_pred cCCCCcccccCCcCCcEEEcCCCCCcc--ccccccCCCccCEEeccCCCCCCcCchhhhhccccC--cEEEecccccccc
Q 036269 119 QHFGDLSLIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKL--EELYMSKTFCHWQ 194 (623)
Q Consensus 119 ~~l~~i~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L--~~L~l~~~~~~~~ 194 (623)
. ++.++.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+..+++| +.|++++|.+..
T Consensus 80 ~-l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 80 K-LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp C-CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred c-eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccc-
Confidence 8 8888544 89999999999999985 57899999999999999954 443 227778888 999999987621
Q ss_pred cccccccccccccccccCCCC-ccEEEeecCCC-ccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccc
Q 036269 195 FENEDDSRSNAKFIELGALSR-LTSLHIDIPEG-EIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSR 270 (623)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~-~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (623)
....+..++.+.. .-.+++++|.. ..++.. ..+++|+.++++.+.....- ..+......-...+.++
T Consensus 153 --------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~l~~l~~L~ 223 (520)
T 2z7x_B 153 --------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC-SYFLSILAKLQTNPKLS 223 (520)
T ss_dssp --------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT-HHHHHHHHGGGGCTTCC
T ss_pred --------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc-ceeecchhhhccccchh
Confidence 1233445555542 22345555553 333333 56788888888876421000 01111111112455667
Q ss_pred eeeeccccccccchHHHHHH--HhhceeEeecccCCccccccccc---ccCccCccEEEEecccCceeeccccccccccc
Q 036269 271 AMGLSQDMRISALPSWIKNL--LLRSEILALGDVNDLENIVSDLA---HDGFNELMFLAIVGCNEMKYLLNSLERTLRVT 345 (623)
Q Consensus 271 ~l~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 345 (623)
.+.+..+...+..+..+... .++|++|++++|.....++..+. ...+++|+.++++++. + .++.. ....
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~~----~~~~ 297 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQS----YIYE 297 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC-C-CSCTH----HHHH
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc-e-ecchh----hhhc
Confidence 77776544332222222211 14788888877753322222210 1456777777777773 3 33211 1111
Q ss_pred c---cccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccce
Q 036269 346 L---LKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERV 422 (623)
Q Consensus 346 ~---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~ 422 (623)
+ ++|+.|+++++. +... .+ .+.+++|+.|++++| .+++..|.. +..+++|++|++++ +.++++.. .
T Consensus 298 ~~~~~~L~~L~l~~n~-l~~~---~~-~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~-N~l~~l~~---~ 366 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTR-MVHM---LC-PSKISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQM-NQLKELSK---I 366 (520)
T ss_dssp HHHTCCCSEEEEESSC-CCCC---CC-CSSCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCS-SCCCBHHH---H
T ss_pred ccccCceeEEEcCCCc-cccc---cc-hhhCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccC-CccCcccc---c
Confidence 1 458888888776 2211 11 146778888888874 455544544 56778888888888 56654310 0
Q ss_pred eccccccccccCccEEecCCccchhh-cccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccc
Q 036269 423 NIAKEETELFSSLEKLTLIGLPRMTD-IWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIH 501 (623)
Q Consensus 423 ~~~~~~~~~~~~L~~L~l~~c~~l~~-i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~ 501 (623)
+..+..+++|++|++++|. ++. ++.. .+..+++|++|++++| .++...|..+. ++|+.|++.+|..
T Consensus 367 ---~~~~~~l~~L~~L~Ls~N~-l~~~l~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l---- 433 (520)
T 2z7x_B 367 ---AEMTTQMKSLQQLDISQNS-VSYDEKKG--DCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKI---- 433 (520)
T ss_dssp ---HHHHTTCTTCCEEECCSSC-CBCCGGGC--SCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCC----
T ss_pred ---hHHHhhCCCCCEEECCCCc-CCcccccc--hhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCcc----
Confidence 3445677888888888873 443 4221 2345678888888875 34333233332 4556666655533
Q ss_pred eeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCC
Q 036269 502 IHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCP 553 (623)
Q Consensus 502 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 553 (623)
. ..|..+..+++|+.|++++| +++.+++. .+..+++|++|++++|+
T Consensus 434 ---~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 434 ---K-SIPKQVVKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ---C-CCCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred ---c-ccchhhhcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCC
Confidence 1 33444445566666666663 45554332 34555666666666655
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.8e-33 Score=299.14 Aligned_cols=363 Identities=15% Similarity=0.178 Sum_probs=205.5
Q ss_pred cccCCcCCcEEEcCCCCCcc------------------cccccc--CCCccCEEeccCCCCCCcCchhhhhccccCcEEE
Q 036269 126 LIGELSLLEILDLSESDVSE------------------IPVSFG--RLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185 (623)
Q Consensus 126 ~~~~l~~L~~L~l~~~~i~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~ 185 (623)
.++++++|++|++++|.++. +|..++ ++++|++|++++|...+.+|.. ++++++|++|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLIN 279 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEE
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEE
Confidence 45555555555555555554 555555 5555555555555445555543 55555555555
Q ss_pred ecccc-cccccccccccccc-cccccccCC------CCccEEEeecCCCccCCC--c-ccccCccEEEEEeCCCCCCCcc
Q 036269 186 MSKTF-CHWQFENEDDSRSN-AKFIELGAL------SRLTSLHIDIPEGEIMPS--D-MSFQNLTSFSITIGGPEEVPLS 254 (623)
Q Consensus 186 l~~~~-~~~~~~~~~~~~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~~~ 254 (623)
+++|. +. . .+|..++.+ ++|+.|++++|.+..+|. . ..+++|+.|+++++....
T Consensus 280 Ls~n~~l~-----------~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g---- 344 (636)
T 4eco_A 280 VACNRGIS-----------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG---- 344 (636)
T ss_dssp CTTCTTSC-----------HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE----
T ss_pred CcCCCCCc-----------cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc----
Confidence 55554 31 1 233333333 555555555555555554 2 455555555554443210
Q ss_pred hhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccC-ccEEEEecccCcee
Q 036269 255 DFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNE-LMFLAIVGCNEMKY 333 (623)
Q Consensus 255 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~ 333 (623)
.+| .+.. +++|++|++++|... .++..+ ..+++ |+.|++++| .++.
T Consensus 345 ---------------------------~ip-~~~~-l~~L~~L~L~~N~l~-~lp~~l--~~l~~~L~~L~Ls~N-~l~~ 391 (636)
T 4eco_A 345 ---------------------------KLP-AFGS-EIKLASLNLAYNQIT-EIPANF--CGFTEQVENLSFAHN-KLKY 391 (636)
T ss_dssp ---------------------------ECC-CCEE-EEEESEEECCSSEEE-ECCTTS--EEECTTCCEEECCSS-CCSS
T ss_pred ---------------------------chh-hhCC-CCCCCEEECCCCccc-cccHhh--hhhcccCcEEEccCC-cCcc
Confidence 001 0000 145666666655432 222222 44566 777777777 4544
Q ss_pred ecccccccccccccccceeecccCcccccccccccC-----CCcCCCccEEEEeecCCcccccchhHHHhccccceEEEe
Q 036269 334 LLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLP-----AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVE 408 (623)
Q Consensus 334 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 408 (623)
++... ....+++|+.|+++++. +.......++ .-.+++|+.|++++| .++. +|...+..+++|++|+++
T Consensus 392 lp~~~---~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~-lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 392 IPNIF---DAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISK-FPKELFSTGSPLSSINLM 465 (636)
T ss_dssp CCSCC---CTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCS-CCTHHHHTTCCCSEEECC
T ss_pred cchhh---hhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCC-ccCc-CCHHHHccCCCCCEEECC
Confidence 44321 12224477888887776 2221111111 014568889999884 5554 676656678899999999
Q ss_pred ccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCccc--ccCCccEEEEEcCCCcceeccCcccCccc
Q 036269 409 GCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFV--SLHDLKKIRVVFCDELRQVFPANLGKKAA 486 (623)
Q Consensus 409 ~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~--~l~~L~~L~l~~C~~l~~~~~~~l~~~~~ 486 (623)
+ +.++++...... .....+..+++|++|++++| .++.+ +.... .+++|++|++++ +.++. +|..+..+++
T Consensus 466 ~-N~l~~i~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~l---p~~~~~~~l~~L~~L~Ls~-N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 466 G-NMLTEIPKNSLK-DENENFKNTYLLTSIDLRFN-KLTKL---SDDFRATTLPYLVGIDLSY-NSFSK-FPTQPLNSST 537 (636)
T ss_dssp S-SCCSBCCSSSSE-ETTEECTTGGGCCEEECCSS-CCCBC---CGGGSTTTCTTCCEEECCS-SCCSS-CCCGGGGCSS
T ss_pred C-CCCCCcCHHHhc-cccccccccCCccEEECcCC-cCCcc---ChhhhhccCCCcCEEECCC-CCCCC-cChhhhcCCC
Confidence 8 677765211000 00001122348999999988 56665 44444 688999999998 46666 4777778888
Q ss_pred chhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhh
Q 036269 487 AEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEI 558 (623)
Q Consensus 487 L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l 558 (623)
|+.|++.+|..-+ ...+....|..+..+++|+.|++++| +++.+|.. +. ++|++|++++|+ +..+
T Consensus 538 L~~L~Ls~N~~ls-~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~--~~--~~L~~L~Ls~N~-l~~~ 602 (636)
T 4eco_A 538 LKGFGIRNQRDAQ-GNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK--IT--PNISVLDIKDNP-NISI 602 (636)
T ss_dssp CCEEECCSCBCTT-CCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC--CC--TTCCEEECCSCT-TCEE
T ss_pred CCEEECCCCcccc-cCcccccChHHHhcCCCCCEEECCCC-cCCccCHh--Hh--CcCCEEECcCCC-Cccc
Confidence 8888885432000 02345666778888889999999885 45777543 22 788999999887 5444
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=3.6e-32 Score=294.66 Aligned_cols=425 Identities=14% Similarity=0.157 Sum_probs=246.2
Q ss_pred CCCCCCC---CCCCC--CCCCcEEEcccCCcc-cccccC-CCCCcceEEccCCCCC-------------CCChhhHh---
Q 036269 23 GVELKDW---PSINT--FEDLTGISLMFNDIH-EVHEGL-QCPRLQALFLQKNDLL-------------DIPDPFFQ--- 79 (623)
Q Consensus 23 ~~~~~~~---~~~~~--~~~l~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~~~-------------~l~~~~~~--- 79 (623)
+.....| +++.. -.+++.|+++++.+. .+|+.+ .+++|++|++++|.+. .+|.....
T Consensus 63 ~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (636)
T 4eco_A 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142 (636)
T ss_dssp SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH
T ss_pred CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH
Confidence 3445667 66533 247999999999885 677766 8999999999998541 11111000
Q ss_pred ------------------------------------CCCcccEEEcc--CCcccccCCCchhhhccccCcEEeccCCcCC
Q 036269 80 ------------------------------------GMKDLKVLDLG--GSGVFSLFSLPSSLSFLINLRTLSLHDCQHF 121 (623)
Q Consensus 80 ------------------------------------~l~~Lr~L~l~--~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l 121 (623)
....++.+.+. +|.++ .+|..++++++|++|++++|. +
T Consensus 143 l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~---~ip~~l~~l~~L~~L~Ls~n~-l 218 (636)
T 4eco_A 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT---FVSKAVMRLTKLRQFYMGNSP-F 218 (636)
T ss_dssp THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE---EECGGGGGCTTCCEEEEESCC-C
T ss_pred hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCc---cCCHHHhcccCCCEEECcCCc-c
Confidence 00011111111 34553 377777777777777777777 6
Q ss_pred CC------------------c-cccc--CCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCC--cCchhhhhc
Q 036269 122 GD------------------L-SLIG--ELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLE--LIPRGVLSR 177 (623)
Q Consensus 122 ~~------------------i-~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~--~l~~~~~~~ 177 (623)
.. + ..++ ++++|++|++++|.+. .+|..++++++|++|++++|..+. .+|.. +++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~ 297 (636)
T 4eco_A 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQA 297 (636)
T ss_dssp CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHH
T ss_pred ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHh
Confidence 54 5 5556 7777777777777655 667777777777777777755233 46655 555
Q ss_pred c------ccCcEEEecccccccccccccccccccccc--cccCCCCccEEEeecCCCc-cCCCcccccCccEEEEEeCCC
Q 036269 178 L------RKLEELYMSKTFCHWQFENEDDSRSNAKFI--ELGALSRLTSLHIDIPEGE-IMPSDMSFQNLTSFSITIGGP 248 (623)
Q Consensus 178 l------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 248 (623)
+ ++|++|++++|.+ ..++. .++++++|+.|++++|.+. .+|....+++|+.|+++++..
T Consensus 298 L~~~~~l~~L~~L~L~~n~l------------~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 298 LADAPVGEKIQIIYIGYNNL------------KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp HHHSGGGGTCCEEECCSSCC------------SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEE
T ss_pred hhccccCCCCCEEECCCCcC------------CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcc
Confidence 4 7777777777766 24555 6777777777777777765 666336666777777665532
Q ss_pred CCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhh-ceeEeecccCCcccccccccccCccCccEEEEec
Q 036269 249 EEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLR-SEILALGDVNDLENIVSDLAHDGFNELMFLAIVG 327 (623)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 327 (623)
.. +|.++... ++ |++|++++|... .++..+....+++|+.|++++
T Consensus 366 ~~--------------------------------lp~~l~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 366 TE--------------------------------IPANFCGF-TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EE--------------------------------CCTTSEEE-CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred cc--------------------------------ccHhhhhh-cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence 21 11111111 34 666666665532 333222222234666666666
Q ss_pred ccCceeecccccc---cccccccccceeecccCcccccccccccCC---CcCCCccEEEEeecCCcccccchhHHHh---
Q 036269 328 CNEMKYLLNSLER---TLRVTLLKLEWLMIVDNRNFVEICHGQLPA---GCLSNVKRLDVRDCGSVLKILPSHLVQS--- 398 (623)
Q Consensus 328 ~~~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~--- 398 (623)
| .+......... ...-.+++|+.|+++++. ++ .+|. ..+++|+.|++++| .++. +|......
T Consensus 412 N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~-----~lp~~~~~~l~~L~~L~Ls~N-~l~~-i~~~~~~~~~~ 482 (636)
T 4eco_A 412 N-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-IS-----KFPKELFSTGSPLSSINLMGN-MLTE-IPKNSLKDENE 482 (636)
T ss_dssp S-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CC-----SCCTHHHHTTCCCSEEECCSS-CCSB-CCSSSSEETTE
T ss_pred C-cCCCcchhhhcccccccccCCCCCEEECcCCc-cC-----cCCHHHHccCCCCCEEECCCC-CCCC-cCHHHhccccc
Confidence 6 23221111000 000134466677776665 22 2222 13566777777663 4443 44332221
Q ss_pred ----ccccceEEEeccccceeeeeccceeccccccc--cccCccEEecCCccchhhcccCCCcccccCCccEEEEEcC--
Q 036269 399 ----FQNLQRLRVEGCELLVSVFEIERVNIAKEETE--LFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFC-- 470 (623)
Q Consensus 399 ----l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C-- 470 (623)
+++|+.|++++ +.++++ |..+. .+++|++|++++| .++.+ +..+..+++|++|+++++
T Consensus 483 ~~~~l~~L~~L~Ls~-N~l~~l---------p~~~~~~~l~~L~~L~Ls~N-~l~~i---p~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 483 NFKNTYLLTSIDLRF-NKLTKL---------SDDFRATTLPYLVGIDLSYN-SFSKF---PTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp ECTTGGGCCEEECCS-SCCCBC---------CGGGSTTTCTTCCEEECCSS-CCSSC---CCGGGGCSSCCEEECCSCBC
T ss_pred cccccCCccEEECcC-CcCCcc---------ChhhhhccCCCcCEEECCCC-CCCCc---ChhhhcCCCCCEEECCCCcc
Confidence 22777777777 556654 44444 6777777777777 44444 445556777777777542
Q ss_pred ---CCcceeccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCccee
Q 036269 471 ---DELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNL 532 (623)
Q Consensus 471 ---~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~ 532 (623)
+++....|..+..+++|++|++.+|.. +..|..+. ++|+.|++++|+ +..+
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l--------~~ip~~~~--~~L~~L~Ls~N~-l~~~ 602 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI--------RKVNEKIT--PNISVLDIKDNP-NISI 602 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC--------CBCCSCCC--TTCCEEECCSCT-TCEE
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCcC--------CccCHhHh--CcCCEEECcCCC-Cccc
Confidence 344445577777777777777777643 33444433 799999999964 4444
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=2.8e-31 Score=292.19 Aligned_cols=357 Identities=14% Similarity=0.136 Sum_probs=190.8
Q ss_pred cccCCcCCcEEEcCCCCCcc------------------cccccc--CCCccCEEeccCCCCCCcCchhhhhccccCcEEE
Q 036269 126 LIGELSLLEILDLSESDVSE------------------IPVSFG--RLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185 (623)
Q Consensus 126 ~~~~l~~L~~L~l~~~~i~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~ 185 (623)
.++++++|++|++++|.++. +|..++ ++++|++|++++|...+.+|.. +.++++|+.|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLN 521 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEE
Confidence 44555555555555555554 555544 5555555555555445555543 55555555555
Q ss_pred ecccc-ccccccccccccccccccccc-------CCCCccEEEeecCCCccCCC--c-ccccCccEEEEEeCCCCCCCcc
Q 036269 186 MSKTF-CHWQFENEDDSRSNAKFIELG-------ALSRLTSLHIDIPEGEIMPS--D-MSFQNLTSFSITIGGPEEVPLS 254 (623)
Q Consensus 186 l~~~~-~~~~~~~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~~~ 254 (623)
+++|. +.. ..+|..++ .+++|+.|++++|.+..+|. . ..+++|+.|+++.+.....
T Consensus 522 Ls~N~~lsg----------~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l--- 588 (876)
T 4ecn_A 522 IACNRGISA----------AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--- 588 (876)
T ss_dssp CTTCTTSCH----------HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBC---
T ss_pred CcCCCCccc----------ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccc---
Confidence 55554 311 01222222 22355555555555555555 2 4455555555544432211
Q ss_pred hhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccC-ccEEEEecccCcee
Q 036269 255 DFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNE-LMFLAIVGCNEMKY 333 (623)
Q Consensus 255 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~ 333 (623)
| .+.. +++|+.|++++|... .++..+ ..+++ |+.|++++| .++.
T Consensus 589 -----------------------------p-~~~~-L~~L~~L~Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N-~L~~ 633 (876)
T 4ecn_A 589 -----------------------------E-AFGT-NVKLTDLKLDYNQIE-EIPEDF--CAFTDQVEGLGFSHN-KLKY 633 (876)
T ss_dssp -----------------------------C-CCCT-TSEESEEECCSSCCS-CCCTTS--CEECTTCCEEECCSS-CCCS
T ss_pred -----------------------------h-hhcC-CCcceEEECcCCccc-cchHHH--hhccccCCEEECcCC-CCCc
Confidence 1 0000 145666666655532 222222 44566 777777777 4544
Q ss_pred ecccccccccccccccceeecccCcccccccccccC----CCcCCCccEEEEeecCCcccccchhHHHhccccceEEEec
Q 036269 334 LLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLP----AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEG 409 (623)
Q Consensus 334 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 409 (623)
++... .....++|+.|+++++. +.... ..++ .-..++|+.|++++| .++. +|......+++|+.|++++
T Consensus 634 lp~~~---~~~~~~~L~~L~Ls~N~-l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N-~L~~-lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 634 IPNIF---NAKSVYVMGSVDFSYNK-IGSEG-RNISCSMDDYKGINASTVTLSYN-EIQK-FPTELFATGSPISTIILSN 706 (876)
T ss_dssp CCSCC---CTTCSSCEEEEECCSSC-TTTTS-SSCSSCTTTCCCCCEEEEECCSS-CCCS-CCHHHHHTTCCCSEEECCS
T ss_pred Cchhh---hccccCCCCEEECcCCc-CCCcc-ccchhhhccccCCCcCEEEccCC-cCCc-cCHHHHccCCCCCEEECCC
Confidence 44211 11123347777777775 21110 0111 113458889999885 5554 6776566888999999998
Q ss_pred cccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCccc--ccCCccEEEEEcCCCcceeccCcccCcccc
Q 036269 410 CELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFV--SLHDLKKIRVVFCDELRQVFPANLGKKAAA 487 (623)
Q Consensus 410 c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~--~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L 487 (623)
+.++.+...... .....+..+++|+.|++++| .++.+ +.... .+++|+.|+++++ .++.+ |..+..+++|
T Consensus 707 -N~L~~ip~~~~~-~~~~~l~nl~~L~~L~Ls~N-~L~~l---p~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~l~~L~~L 778 (876)
T 4ecn_A 707 -NLMTSIPENSLK-PKDGNYKNTYLLTTIDLRFN-KLTSL---SDDFRATTLPYLSNMDVSYN-CFSSF-PTQPLNSSQL 778 (876)
T ss_dssp -CCCSCCCTTSSS-CTTSCCTTGGGCCEEECCSS-CCCCC---CGGGSTTTCTTCCEEECCSS-CCSSC-CCGGGGCTTC
T ss_pred -CcCCccChHHhc-cccccccccCCccEEECCCC-CCccc---hHHhhhccCCCcCEEEeCCC-CCCcc-chhhhcCCCC
Confidence 677765211000 00001223458999999888 66665 44444 6888999999884 56654 6666666777
Q ss_pred hhhhhhcccccccc-eeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCC
Q 036269 488 EEMVLYRNRRDQIH-IHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCP 553 (623)
Q Consensus 488 ~~l~~~~~~~~~l~-~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 553 (623)
+.|++.+|.. +. ..+....|..+..+++|+.|++++| ++..+|.. + .++|+.|+|++|+
T Consensus 779 ~~L~Ls~N~~--ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~--l--~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 779 KAFGIRHQRD--AEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK--L--TPQLYILDIADNP 838 (876)
T ss_dssp CEEECCCCBC--TTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC--C--CSSSCEEECCSCT
T ss_pred CEEECCCCCC--cccccccccChHHHhcCCCCCEEECCCC-CCCccCHh--h--cCCCCEEECCCCC
Confidence 7766655320 00 1233455666666777777777764 34655432 1 2567777777766
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.5e-31 Score=280.87 Aligned_cols=446 Identities=16% Similarity=0.160 Sum_probs=287.2
Q ss_pred ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEc
Q 036269 61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDL 138 (623)
Q Consensus 61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l 138 (623)
++|++++|.++.+|..++ ++|++|++++|.+. +..|..+..+++|++|++++|. +..+ ..++++++|++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYIS--ELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCC--CCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCccc--ccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEec
Confidence 689999999999998652 89999999999994 3344679999999999999999 8776 57999999999999
Q ss_pred CCCCCccccccccCCCccCEEeccCCCCCC-cCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCc-
Q 036269 139 SESDVSEIPVSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRL- 216 (623)
Q Consensus 139 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L- 216 (623)
++|.++.+|.. .+++|++|++++|...+ .+|.. ++++++|++|++++|.+. . ..++.+++|
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~---~~~~~l~~L~ 139 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLE-----------K---SSVLPIAHLN 139 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCC-----------G---GGGGGGTTSC
T ss_pred CCCceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccc-----------h---hhccccccce
Confidence 99999999977 89999999999954433 35555 899999999999999873 2 245566677
Q ss_pred -cEEEeecCCC--cc-CCCcccccCcc--EEEEEe--CCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHH
Q 036269 217 -TSLHIDIPEG--EI-MPSDMSFQNLT--SFSITI--GGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIK 288 (623)
Q Consensus 217 -~~L~l~~~~~--~~-~~~~~~~~~L~--~L~l~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 288 (623)
+.|++++|.+ .. .|.. +..+. .+++.. +.... .++....
T Consensus 140 L~~L~l~~n~l~~~~~~~~~--l~~l~~~~l~l~l~~n~~~~-------------------------------~~~~~~~ 186 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKEDPEG--LQDFNTESLHIVFPTNKEFH-------------------------------FILDVSV 186 (520)
T ss_dssp EEEEEEEECTTTTSSCCTTT--TTTCCEEEEEEECCSSSCCC-------------------------------CCCCCCC
T ss_pred eeEEEeeccccccccccccc--ccccccceEEEEeccCcchh-------------------------------hhhhhhh
Confidence 9999999876 22 2322 33332 333322 21111 1111000
Q ss_pred HHHhhceeEeecccCC------cccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCccccc
Q 036269 289 NLLLRSEILALGDVND------LENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVE 362 (623)
Q Consensus 289 ~~~~~L~~L~l~~~~~------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 362 (623)
..+++|+.+++++|.. +...++.+ ..+++|+.|+++++ .+........ ......++|++|+++++. +.
T Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~-~l~~~~~~~~-~~~~~~~~L~~L~l~~n~-l~- 260 (520)
T 2z7x_B 187 KTVANLELSNIKCVLEDNKCSYFLSILAKL--QTNPKLSNLTLNNI-ETTWNSFIRI-LQLVWHTTVWYFSISNVK-LQ- 260 (520)
T ss_dssp TTCSEEEECCEEECCSTTTTHHHHHHHHGG--GGCTTCCEEEEEEE-EEEHHHHHHH-HHHHHTSSCSEEEEEEEE-EE-
T ss_pred hcccceeeccccccccccccceeecchhhh--ccccchhhcccccc-ccCHHHHHHH-HHHhhhCcccEEEeeccc-cc-
Confidence 1115666676666531 11122222 45677888888777 2221100000 011123478888888775 22
Q ss_pred ccccccCC-------CcCCCccEEEEeecCCcccccchhHHHhc---cccceEEEeccccceeeeeccceeccccccccc
Q 036269 363 ICHGQLPA-------GCLSNVKRLDVRDCGSVLKILPSHLVQSF---QNLQRLRVEGCELLVSVFEIERVNIAKEETELF 432 (623)
Q Consensus 363 ~~~~~~~~-------~~~~~L~~L~l~~c~~l~~~~~~~~~~~l---~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~ 432 (623)
+.+|. +.+++|+.++++++.. .+|...+..+ .+|+.|++++ +.+..+ + ....+
T Consensus 261 ---~~~p~~~~~~~~~~l~~L~~l~l~~n~~---~~p~~~~~~~~~~~~L~~L~l~~-n~l~~~---------~-~~~~l 323 (520)
T 2z7x_B 261 ---GQLDFRDFDYSGTSLKALSIHQVVSDVF---GFPQSYIYEIFSNMNIKNFTVSG-TRMVHM---------L-CPSKI 323 (520)
T ss_dssp ---SCCCCCCCCCCSCCCCEEEEEEEEECCC---CSCTHHHHHHHHTCCCSEEEEES-SCCCCC---------C-CCSSC
T ss_pred ---CccccchhhcccccCceeEeccccccce---ecchhhhhcccccCceeEEEcCC-Cccccc---------c-chhhC
Confidence 12221 4577788888877543 2553334444 5688888888 444432 1 11457
Q ss_pred cCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCccee--ccCcccCcccchhhhhhcccccccceeccccCCC
Q 036269 433 SSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQV--FPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSS 510 (623)
Q Consensus 433 ~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~--~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~ 510 (623)
++|++|++++|. ++.. .+..+..+++|++|++++| +++.+ .|..++.+++|++|++.+|.. ....|.
T Consensus 324 ~~L~~L~Ls~n~-l~~~--~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l-------~~~l~~ 392 (520)
T 2z7x_B 324 SPFLHLDFSNNL-LTDT--VFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSV-------SYDEKK 392 (520)
T ss_dssp CCCCEEECCSSC-CCTT--TTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCC-------BCCGGG
T ss_pred CcccEEEeECCc-cChh--hhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcC-------Cccccc
Confidence 788888888873 4431 1344566788888888874 45542 245677788888888887744 232333
Q ss_pred C-CCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccC
Q 036269 511 P-TPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLL 589 (623)
Q Consensus 511 ~-~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 589 (623)
+ +..+++|++|++++|.--..++.. + .++|+.|++++|. ++.++. ....+++|++|+++++
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~--l--~~~L~~L~Ls~N~-l~~ip~-------------~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRC--L--PPRIKVLDLHSNK-IKSIPK-------------QVVKLEALQELNVASN 454 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGS--C--CTTCCEEECCSSC-CCCCCG-------------GGGGCTTCCEEECCSS
T ss_pred chhccCccCCEEECcCCCCCcchhhh--h--cccCCEEECCCCc-ccccch-------------hhhcCCCCCEEECCCC
Confidence 2 567788888888886432332211 1 1688888888886 666643 3447788888888887
Q ss_pred cccceecCCCCcceeecCCccEEEeccCC
Q 036269 590 DSLTCFCSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
.++.++. +. ...+++|++|++.+++
T Consensus 455 -~l~~l~~-~~--~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 455 -QLKSVPD-GI--FDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -CCCCCCT-TT--TTTCTTCCEEECCSSC
T ss_pred -cCCccCH-HH--hccCCcccEEECcCCC
Confidence 5667765 31 2246788888888765
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.1e-30 Score=287.46 Aligned_cols=419 Identities=13% Similarity=0.113 Sum_probs=207.5
Q ss_pred CCCCC--CCCCcEEEcccCCcc-cccccC-CCCCcceEEc-cCCCCC-CCChh---------------------------
Q 036269 30 PSINT--FEDLTGISLMFNDIH-EVHEGL-QCPRLQALFL-QKNDLL-DIPDP--------------------------- 76 (623)
Q Consensus 30 ~~~~~--~~~l~~L~l~~~~~~-~l~~~~-~~~~L~~L~l-~~~~~~-~l~~~--------------------------- 76 (623)
+++.+ -.+++.|+++++.+. .+|+.+ .+++|+.|+| ++|.+. ..+..
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~ 394 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCC
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhcc
Confidence 66643 367999999999985 677777 8999999999 666432 10000
Q ss_pred -------------h--------H--hCCCcccEEEcc--CCcccccCCCchhhhccccCcEEeccCCcCCCC--------
Q 036269 77 -------------F--------F--QGMKDLKVLDLG--GSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD-------- 123 (623)
Q Consensus 77 -------------~--------~--~~l~~Lr~L~l~--~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~-------- 123 (623)
+ . .....++.+.+. +|.+ ..+|..+.++++|++|++++|. +..
T Consensus 395 ~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L---~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~ 470 (876)
T 4ecn_A 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI---TFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWE 470 (876)
T ss_dssp CGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEE---EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCS
T ss_pred CcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcc---cchhHHHhcCCCCCEEECcCCc-CCCCccccccc
Confidence 0 0 000111111111 1333 2255556666666666666665 543
Q ss_pred ----------c-cccc--CCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCC--cCchhhhhccc-------c
Q 036269 124 ----------L-SLIG--ELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLE--LIPRGVLSRLR-------K 180 (623)
Q Consensus 124 ----------i-~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~--~l~~~~~~~l~-------~ 180 (623)
+ ..++ ++++|++|++++|.+. .+|..++++++|++|++++|..+. .+|.. +++++ +
T Consensus 471 ~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPK 549 (876)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTT
T ss_pred ccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCC
Confidence 3 3333 5666666666665543 555556666666666666643233 35543 34443 6
Q ss_pred CcEEEecccccccccccccccccccccc--cccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhh
Q 036269 181 LEELYMSKTFCHWQFENEDDSRSNAKFI--ELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIE 258 (623)
Q Consensus 181 L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 258 (623)
|++|++++|.+ ..++. .++++++|+.|++++|.+..+|....+++|+.|+++++.....+
T Consensus 550 L~~L~Ls~N~L------------~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp------ 611 (876)
T 4ecn_A 550 IQIFYMGYNNL------------EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIP------ 611 (876)
T ss_dssp CCEEECCSSCC------------CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCC------
T ss_pred ccEEEeeCCcC------------CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccch------
Confidence 66666666655 13344 45566666666666665555553355555666655554432111
Q ss_pred hhhhcccccccceeeeccccccccchHHHHHHHhh-ceeEeecccCCcccccccccccCccCccEEEEecccCceeeccc
Q 036269 259 VFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLR-SEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNS 337 (623)
Q Consensus 259 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 337 (623)
.++... ++ |+.|++++|.. ..++..+.....++|+.|++++| .+......
T Consensus 612 --------------------------~~l~~l-~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N-~l~g~ip~ 662 (876)
T 4ecn_A 612 --------------------------EDFCAF-TDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRN 662 (876)
T ss_dssp --------------------------TTSCEE-CTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSS-CTTTTSSS
T ss_pred --------------------------HHHhhc-cccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCC-cCCCcccc
Confidence 111001 23 44555544442 12222111111223555555555 22111000
Q ss_pred c-cccccccccccceeecccCcccccccccccCC---CcCCCccEEEEeecCCcccccchhHHH-------hccccceEE
Q 036269 338 L-ERTLRVTLLKLEWLMIVDNRNFVEICHGQLPA---GCLSNVKRLDVRDCGSVLKILPSHLVQ-------SFQNLQRLR 406 (623)
Q Consensus 338 ~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~-------~l~~L~~L~ 406 (623)
. ........++|+.|++++|. +. .+|. ..+++|+.|++++| .++. +|..... ++++|+.|+
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~-L~-----~lp~~~~~~l~~L~~L~Ls~N-~L~~-ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNE-IQ-----KFPTELFATGSPISTIILSNN-LMTS-IPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSC-CC-----SCCHHHHHTTCCCSEEECCSC-CCSC-CCTTSSSCTTSCCTTGGGCCEEE
T ss_pred chhhhccccCCCcCEEEccCCc-CC-----ccCHHHHccCCCCCEEECCCC-cCCc-cChHHhccccccccccCCccEEE
Confidence 0 00000112345555555554 21 1221 13455555555553 3332 3332111 223666666
Q ss_pred Eeccccceeeeeccceeccccccc--cccCccEEecCCccchhhcccCCCcccccCCccEEEEEcC-----CCcceeccC
Q 036269 407 VEGCELLVSVFEIERVNIAKEETE--LFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFC-----DELRQVFPA 479 (623)
Q Consensus 407 l~~c~~l~~i~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C-----~~l~~~~~~ 479 (623)
+++ +.++++ |..+. .+++|+.|++++| .++.+ +..+..+++|+.|+++++ +.+....|.
T Consensus 735 Ls~-N~L~~l---------p~~l~~~~l~~L~~L~Ls~N-~L~~l---p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 735 LRF-NKLTSL---------SDDFRATTLPYLSNMDVSYN-CFSSF---PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp CCS-SCCCCC---------CGGGSTTTCTTCCEEECCSS-CCSSC---CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred CCC-CCCccc---------hHHhhhccCCCcCEEEeCCC-CCCcc---chhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 666 455544 33443 5566666666665 34443 344455666666666542 334444566
Q ss_pred cccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceec
Q 036269 480 NLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLF 533 (623)
Q Consensus 480 ~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 533 (623)
.+..+++|+.|++.+|.. +..|..+. ++|+.|+|++|+ +..+.
T Consensus 801 ~l~~L~~L~~L~Ls~N~L--------~~Ip~~l~--~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI--------RKVDEKLT--PQLYILDIADNP-NISID 843 (876)
T ss_dssp TGGGCSSCCEEECCSSCC--------CBCCSCCC--SSSCEEECCSCT-TCEEE
T ss_pred HHhcCCCCCEEECCCCCC--------CccCHhhc--CCCCEEECCCCC-CCccC
Confidence 666666777777666633 33444433 699999999965 55543
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.1e-29 Score=270.24 Aligned_cols=465 Identities=17% Similarity=0.145 Sum_probs=297.4
Q ss_pred CCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269 35 FEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114 (623)
Q Consensus 35 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~ 114 (623)
....++++++++.++.+|.... ++++.|++++|.+..+++..|.++++|++|++++|.++ +..|..+..+++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC--EECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC--cCCHHHhCCCCCCCEEE
Confidence 3445899999999999997654 79999999999999888777899999999999999994 44467799999999999
Q ss_pred ccCCcCCCCcccccCCcCCcEEEcCCCCCcccc--ccccCCCccCEEeccCCCCCCcCchhhhhccccC--cEEEecccc
Q 036269 115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKL--EELYMSKTF 190 (623)
Q Consensus 115 l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L--~~L~l~~~~ 190 (623)
+++|. +..++.. .+++|++|++++|.++.+| ..++++++|++|+++++ .+.... +..+++| ++|++++|.
T Consensus 107 Ls~N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred CCCCc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeeccc
Confidence 99999 8888544 8999999999999999764 78999999999999994 444432 5566666 999999987
Q ss_pred cccccccccccccccccccccCCC--CccEEEeecCCCcc-CCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhccc
Q 036269 191 CHWQFENEDDSRSNAKFIELGALS--RLTSLHIDIPEGEI-MPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFK 265 (623)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~-~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 265 (623)
+.. ....+..+..+. .+ .+++++|.+.. ++.. ..+++|+.++++.+... ...+......-..
T Consensus 181 l~~---------~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~l~~~~~~l~~ 247 (562)
T 3a79_B 181 YHI---------KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN---CQRLMTFLSELTR 247 (562)
T ss_dssp CCC---------CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT---HHHHHHHHHHHHS
T ss_pred ccc---------cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccc---cchHHHHHHHHhc
Confidence 611 022334444443 22 34555555433 2322 56778888888876311 0001111111113
Q ss_pred ccccceeeeccccccccchHHHHHH--HhhceeEeecccCCcccccccccccCccCccEEEEeccc--Cceeeccccccc
Q 036269 266 KRCSRAMGLSQDMRISALPSWIKNL--LLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCN--EMKYLLNSLERT 341 (623)
Q Consensus 266 ~~~l~~l~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~ 341 (623)
.+.++.+.+......+.....+... .++|++|++++|.....++..+.....++++.|.+.++. .+ .++.....
T Consensus 248 l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~- 325 (562)
T 3a79_B 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALY- 325 (562)
T ss_dssp CSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHH-
T ss_pred cCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhh-
Confidence 3455555555432211111111111 147888888887643233322211112445555444431 11 11111000
Q ss_pred ccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccc
Q 036269 342 LRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIER 421 (623)
Q Consensus 342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~ 421 (623)
.....++|+.|+++++. +... ...+.+++|+.|++++| .+++..|.. +..+++|++|++++ +.++.+...
T Consensus 326 ~~~~~~~L~~L~l~~n~-~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~-N~l~~~~~~-- 395 (562)
T 3a79_B 326 SVFAEMNIKMLSISDTP-FIHM----VCPPSPSSFTFLNFTQN-VFTDSVFQG-CSTLKRLQTLILQR-NGLKNFFKV-- 395 (562)
T ss_dssp HHHHTCCCSEEEEESSC-CCCC----CCCSSCCCCCEEECCSS-CCCTTTTTT-CCSCSSCCEEECCS-SCCCBTTHH--
T ss_pred hhhccCcceEEEccCCC-cccc----cCccCCCCceEEECCCC-ccccchhhh-hcccCCCCEEECCC-CCcCCcccc--
Confidence 01112458888888876 2211 11146788999999884 565545544 67888999999988 677654210
Q ss_pred eeccccccccccCccEEecCCccchhh-cccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhccccccc
Q 036269 422 VNIAKEETELFSSLEKLTLIGLPRMTD-IWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQI 500 (623)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~c~~l~~-i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l 500 (623)
+..+..+++|++|++++|. ++. ++. ..+..+++|++|++++| .++...|..+. ++|+.|++.+|..
T Consensus 396 ----~~~~~~l~~L~~L~l~~N~-l~~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l--- 462 (562)
T 3a79_B 396 ----ALMTKNMSSLETLDVSLNS-LNSHAYD--RTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRI--- 462 (562)
T ss_dssp ----HHTTTTCTTCCEEECTTSC-CBSCCSS--CCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCC---
T ss_pred ----hhhhcCCCCCCEEECCCCc-CCCccCh--hhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcC---
Confidence 3445678889999998884 443 421 12456788999999885 45444344433 6788888887754
Q ss_pred ceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCC
Q 036269 501 HIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCP 553 (623)
Q Consensus 501 ~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 553 (623)
...|.++..+++|+.|++++ ++++.+++. .+..+++|+.|++++++
T Consensus 463 -----~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~-~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 463 -----MSIPKDVTHLQALQELNVAS-NQLKSVPDG-VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp -----CCCCTTTTSSCCCSEEECCS-SCCCCCCTT-STTTCTTCCCEECCSCC
T ss_pred -----cccChhhcCCCCCCEEECCC-CCCCCCCHH-HHhcCCCCCEEEecCCC
Confidence 24566666788888888888 467776543 46778888888888876
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=5.1e-29 Score=272.29 Aligned_cols=506 Identities=15% Similarity=0.112 Sum_probs=339.2
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccC
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHD 117 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~ 117 (623)
++.+-++..++++|..+. +.+++|+|++|.++.+++..|.++++|++|++++|.+ ..+| .+|.++++|++|++++
T Consensus 34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i---~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC---CCcChhHhcCCCCCCEEEccC
Confidence 455656667888887652 4799999999999998887789999999999999999 5665 4689999999999999
Q ss_pred CcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCc--CchhhhhccccCcEEEecccccc
Q 036269 118 CQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLEL--IPRGVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~--l~~~~~~~l~~L~~L~l~~~~~~ 192 (623)
|. ++.+ ..+.++++|++|++++|.++.+|. .++++++|++|++++| .+.. .|. .++.+++|++|++++|.+.
T Consensus 110 N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~-~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 110 NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPE-YFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CC-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred Cc-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCch-hhccchhhhhhcccCcccc
Confidence 98 8877 468999999999999999998875 5899999999999995 4443 344 4789999999999999874
Q ss_pred cccccccccccccccccccCCC-CccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccc
Q 036269 193 WQFENEDDSRSNAKFIELGALS-RLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSR 270 (623)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (623)
... ......+.+++ ....++++.|.+..++.. .....+..+.+..+.... ........ ....++
T Consensus 187 ~~~--------~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~----~~~~~~~~--~l~~l~ 252 (635)
T 4g8a_A 187 SIY--------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL----NVMKTCIQ--GLAGLE 252 (635)
T ss_dssp EEC--------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSH----HHHHHHHH--TTTTCE
T ss_pred ccc--------cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccc----cccchhhc--CCcccc
Confidence 221 11122233333 234678888887766655 444456666666543210 01111111 112222
Q ss_pred eeeeccc-----cccccchHHHHHHHhhceeEeecccCCcccccc-cccccCccCccEEEEecccCceeecccccccccc
Q 036269 271 AMGLSQD-----MRISALPSWIKNLLLRSEILALGDVNDLENIVS-DLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRV 344 (623)
Q Consensus 271 ~l~l~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 344 (623)
...+... ................+....+........... ......+.+++.+.+.++ .+..+. ...
T Consensus 253 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~------~~~ 325 (635)
T 4g8a_A 253 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV-TIERVK------DFS 325 (635)
T ss_dssp EEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC-EEEECG------GGG
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc-cccccc------ccc
Confidence 2222110 000011100011113444444432221111000 011244667888888877 333332 234
Q ss_pred cccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceec
Q 036269 345 TLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNI 424 (623)
Q Consensus 345 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~ 424 (623)
....++.|++.++. + ..++...++.|+.+.+.++ ....... ...+++|+.|++++ +.+......
T Consensus 326 ~~~~L~~L~l~~~~-~-----~~~~~~~l~~L~~l~l~~n-~~~~~~~---~~~l~~L~~L~ls~-n~l~~~~~~----- 389 (635)
T 4g8a_A 326 YNFGWQHLELVNCK-F-----GQFPTLKLKSLKRLTFTSN-KGGNAFS---EVDLPSLEFLDLSR-NGLSFKGCC----- 389 (635)
T ss_dssp SCCCCSEEEEESCE-E-----SSCCCCBCTTCCEEEEESC-CSCCBCC---CCBCTTCCEEECCS-SCCBEEEEC-----
T ss_pred cchhhhhhhccccc-c-----cCcCcccchhhhhcccccc-cCCCCcc---cccccccccchhhc-ccccccccc-----
Confidence 46688999998876 2 2344456789999999874 3333222 23679999999999 666543211
Q ss_pred cccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccceec
Q 036269 425 AKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHA 504 (623)
Q Consensus 425 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~ 504 (623)
+......++|+.+++..+... .+ ......+++|+.+++.++.......+..+..+.+++.+++..|..
T Consensus 390 -~~~~~~~~~L~~L~~~~~~~~-~~---~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l------- 457 (635)
T 4g8a_A 390 -SQSDFGTISLKYLDLSFNGVI-TM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT------- 457 (635)
T ss_dssp -CHHHHSCSCCCEEECCSCSEE-EE---CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC-------
T ss_pred -ccchhhhhhhhhhhccccccc-cc---cccccccccccchhhhhcccccccccccccccccccccccccccc-------
Confidence 334456789999999988543 22 344566899999999987666555556677888999998888744
Q ss_pred cccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccce
Q 036269 505 TTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSI 584 (623)
Q Consensus 505 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L 584 (623)
....+..+..+++|+.|++++|..+..+.+ ..+..+++|++|++++|. ++.++.. ....+++|++|
T Consensus 458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l~~~------------~f~~l~~L~~L 523 (635)
T 4g8a_A 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPT------------AFNSLSSLQVL 523 (635)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTT------------TTTTCTTCCEE
T ss_pred ccccccccccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCcChH------------HHcCCCCCCEE
Confidence 444566678899999999999876766544 357889999999999997 7777432 45678999999
Q ss_pred ecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269 585 QLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 585 ~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
+|+++ +++.++. +. ...+++|+.|+++++.
T Consensus 524 ~Ls~N-~l~~l~~-~~--~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 524 NMSHN-NFFSLDT-FP--YKCLNSLQVLDYSLNH 553 (635)
T ss_dssp ECTTS-CCCBCCC-GG--GTTCTTCCEEECTTSC
T ss_pred ECCCC-cCCCCCh-hH--HhCCCCCCEEECCCCc
Confidence 99997 6777654 22 2347899999999873
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=9.9e-30 Score=272.70 Aligned_cols=147 Identities=23% Similarity=0.301 Sum_probs=120.3
Q ss_pred CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcC
Q 036269 56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSL 132 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~ 132 (623)
.+...+++++++|.++.+|..+ .++|++|++++|.+ ..++ ..+.++++|++|++++|. +..+ ..++++++
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i---~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDL---PPRTKALSLSQNSI---SELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQD 101 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTS---CTTCCEEECCSSCC---CCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred ccCCCcEEEcCCCCCccCCCCC---CCCcCEEECCCCCc---cccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCC
Confidence 4556689999999999999865 38999999999999 4554 689999999999999998 8776 56899999
Q ss_pred CcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCch-hhhhccccCcEEEeccccccccccccccccccccccccc
Q 036269 133 LEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPR-GVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELG 211 (623)
Q Consensus 133 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (623)
|++|++++|.++.+|.. .+++|++|++++| .+..++. ..++++++|++|++++|.+. .. .++
T Consensus 102 L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~---~~~ 164 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QL---DLL 164 (562)
T ss_dssp CCEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCC-----------TT---TTG
T ss_pred CCEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccc-----------cC---chh
Confidence 99999999999999977 8999999999994 5665542 34899999999999999873 22 334
Q ss_pred CCCCc--cEEEeecCCC
Q 036269 212 ALSRL--TSLHIDIPEG 226 (623)
Q Consensus 212 ~l~~L--~~L~l~~~~~ 226 (623)
.+++| +.|++++|.+
T Consensus 165 ~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSY 181 (562)
T ss_dssp GGTTSCEEEEEEEESSC
T ss_pred hhhhceeeEEEeecccc
Confidence 44455 9999999976
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.6e-28 Score=256.89 Aligned_cols=342 Identities=20% Similarity=0.234 Sum_probs=215.6
Q ss_pred CCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269 34 TFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL 113 (623)
Q Consensus 34 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L 113 (623)
.+++++.|+++++.+..++....+++|++|++++|.+..+++ +.++++|++|++++|.+ ..++. +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l---~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI---ADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCCGG-GTTCTTCCEE
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcc---ccChh-hcCCCCCCEE
Confidence 356788888888888888765578888888888888887776 68888889998888888 55555 7888888888
Q ss_pred eccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269 114 SLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW 193 (623)
Q Consensus 114 ~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 193 (623)
++++|. +.++..+.++++|++|++++|.+..++ .++++++|++|++.+ ....++. +.++++|+.|++++|.+.
T Consensus 118 ~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~- 190 (466)
T 1o6v_A 118 TLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS- 190 (466)
T ss_dssp ECCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred ECCCCC-CCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC-
Confidence 888887 777766888888888888888888776 478888888888864 3444443 778888888888888762
Q ss_pred ccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceee
Q 036269 194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMG 273 (623)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 273 (623)
....++.+++|+.|++++|.+..++....+++|+.|+++++.....+
T Consensus 191 ------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------- 237 (466)
T 1o6v_A 191 ------------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--------------------- 237 (466)
T ss_dssp ------------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---------------------
T ss_pred ------------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch---------------------
Confidence 12346778888888888887666554555667777776655422110
Q ss_pred eccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceee
Q 036269 274 LSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLM 353 (623)
Q Consensus 274 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 353 (623)
.+.. +++|+.|++++|... ...+ ...+++|+.|++++| .+..++ ....+++|+.|+
T Consensus 238 ------------~l~~-l~~L~~L~l~~n~l~-~~~~---~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~ 293 (466)
T 1o6v_A 238 ------------TLAS-LTNLTDLDLANNQIS-NLAP---LSGLTKLTELKLGAN-QISNIS------PLAGLTALTNLE 293 (466)
T ss_dssp ------------GGGG-CTTCSEEECCSSCCC-CCGG---GTTCTTCSEEECCSS-CCCCCG------GGTTCTTCSEEE
T ss_pred ------------hhhc-CCCCCEEECCCCccc-cchh---hhcCCCCCEEECCCC-ccCccc------cccCCCccCeEE
Confidence 0000 155666666665432 1111 244566666666666 333322 133455666666
Q ss_pred cccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceecccccccccc
Q 036269 354 IVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFS 433 (623)
Q Consensus 354 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~ 433 (623)
++++. ++. ..+.+.+++|+.|++++| .+++..| +..+++|+.|++++ +.++.+ ..+..++
T Consensus 294 L~~n~-l~~----~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~-n~l~~~----------~~l~~l~ 353 (466)
T 1o6v_A 294 LNENQ-LED----ISPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYN-NKVSDV----------SSLANLT 353 (466)
T ss_dssp CCSSC-CSC----CGGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCS-SCCCCC----------GGGTTCT
T ss_pred cCCCc-ccC----chhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCC-CccCCc----------hhhccCC
Confidence 66554 222 122345556666666654 3443222 34556666666665 344432 1234455
Q ss_pred CccEEecCCccchhhcccCCCcccccCCccEEEEEcC
Q 036269 434 SLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFC 470 (623)
Q Consensus 434 ~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C 470 (623)
+|+.|++++| .++++ .....+++|++|++++|
T Consensus 354 ~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 354 NINWLSAGHN-QISDL----TPLANLTRITQLGLNDQ 385 (466)
T ss_dssp TCCEEECCSS-CCCBC----GGGTTCTTCCEEECCCE
T ss_pred CCCEEeCCCC-ccCcc----chhhcCCCCCEEeccCC
Confidence 6666666655 23332 11444555666666553
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=6.4e-27 Score=244.59 Aligned_cols=163 Identities=25% Similarity=0.340 Sum_probs=86.8
Q ss_pred CCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccCC
Q 036269 23 GVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFS 99 (623)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~ 99 (623)
+.++..+|. ..+++++|++++|.++.+++ .+ .+++|++|++++|.+. .++...|.++++|++|++++|.+. +.
T Consensus 19 ~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~--~~ 94 (455)
T 3v47_A 19 NRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL--QL 94 (455)
T ss_dssp SSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC--EE
T ss_pred CCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC--cc
Confidence 344555554 23556666666666655522 23 5666666666666554 444444566666666666666653 33
Q ss_pred CchhhhccccCcEEeccCCcCCCC--cc--cccCCcCCcEEEcCCCCCccc-ccc-ccCCCccCEEeccCCCCCCcCchh
Q 036269 100 LPSSLSFLINLRTLSLHDCQHFGD--LS--LIGELSLLEILDLSESDVSEI-PVS-FGRLGHLRLLDLTDCYNLELIPRG 173 (623)
Q Consensus 100 lp~~~~~l~~L~~L~l~~~~~l~~--i~--~~~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~L~l~~~~~~~~l~~~ 173 (623)
.|..+.++++|++|++++|. +.. +. .++.+++|++|++++|.+..+ |.. +.++++|++|++++|. +..++..
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 172 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEE 172 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTT
T ss_pred ChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChh
Confidence 35556666666666666665 543 12 255566666666666665544 333 5556666666666533 2223222
Q ss_pred hhhcc--ccCcEEEeccccc
Q 036269 174 VLSRL--RKLEELYMSKTFC 191 (623)
Q Consensus 174 ~~~~l--~~L~~L~l~~~~~ 191 (623)
.+..+ .+|+.|++++|.+
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l 192 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITL 192 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBC
T ss_pred hhhccccccccccccccCcc
Confidence 23333 4455555555443
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.9e-26 Score=241.07 Aligned_cols=337 Identities=20% Similarity=0.284 Sum_probs=269.6
Q ss_pred cCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc
Q 036269 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP 101 (623)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp 101 (623)
.+..+..+|.+..++++++|++++|.++.+++...+++|++|++++|.+..+++ +.++++|++|++++|.+ ..++
T Consensus 54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l---~~~~ 128 (466)
T 1o6v_A 54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI---TDID 128 (466)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCCG
T ss_pred CCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCC---CCCh
Confidence 345677888888899999999999999999885599999999999999998877 69999999999999998 5666
Q ss_pred hhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccC
Q 036269 102 SSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKL 181 (623)
Q Consensus 102 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L 181 (623)
. +..+++|++|++++|. +..++.++.+++|++|+++ +.+..++ .+.++++|++|++++| .+..++. +..+++|
T Consensus 129 ~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L 201 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSN-KVSDISV--LAKLTNL 201 (466)
T ss_dssp G-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTC
T ss_pred H-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecC-CcccCch-hhccCCCCCEEECcCC-cCCCChh--hccCCCC
Confidence 5 8899999999999998 8888789999999999997 4555554 3899999999999995 4666664 8899999
Q ss_pred cEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhh
Q 036269 182 EELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFS 261 (623)
Q Consensus 182 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 261 (623)
+.|++++|.+. .. ..++.+++|+.|++++|.+..++....+++|+.|+++++.....+
T Consensus 202 ~~L~l~~n~l~------------~~-~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--------- 259 (466)
T 1o6v_A 202 ESLIATNNQIS------------DI-TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--------- 259 (466)
T ss_dssp SEEECCSSCCC------------CC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---------
T ss_pred CEEEecCCccc------------cc-ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccch---------
Confidence 99999999873 11 227789999999999999887766678899999999887643221
Q ss_pred hcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccc
Q 036269 262 RKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERT 341 (623)
Q Consensus 262 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 341 (623)
. +.. +++|++|++++|... ...+ + ..+++|+.|++++| .++.++
T Consensus 260 -----------------------~-~~~-l~~L~~L~l~~n~l~-~~~~-~--~~l~~L~~L~L~~n-~l~~~~------ 303 (466)
T 1o6v_A 260 -----------------------P-LSG-LTKLTELKLGANQIS-NISP-L--AGLTALTNLELNEN-QLEDIS------ 303 (466)
T ss_dssp -----------------------G-GTT-CTTCSEEECCSSCCC-CCGG-G--TTCTTCSEEECCSS-CCSCCG------
T ss_pred -----------------------h-hhc-CCCCCEEECCCCccC-cccc-c--cCCCccCeEEcCCC-cccCch------
Confidence 1 111 278999999887643 3222 3 57899999999999 555443
Q ss_pred ccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccc
Q 036269 342 LRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIER 421 (623)
Q Consensus 342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~ 421 (623)
....+++|+.|++++|. ++ +..+.+.+++|+.|++++| .+++. + .+..+++|+.|++++ +.++++.
T Consensus 304 ~~~~l~~L~~L~L~~n~-l~----~~~~~~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~l~~-n~l~~~~---- 369 (466)
T 1o6v_A 304 PISNLKNLTYLTLYFNN-IS----DISPVSSLTKLQRLFFYNN-KVSDV-S--SLANLTNINWLSAGH-NQISDLT---- 369 (466)
T ss_dssp GGGGCTTCSEEECCSSC-CS----CCGGGGGCTTCCEEECCSS-CCCCC-G--GGTTCTTCCEEECCS-SCCCBCG----
T ss_pred hhcCCCCCCEEECcCCc-CC----CchhhccCccCCEeECCCC-ccCCc-h--hhccCCCCCEEeCCC-CccCccc----
Confidence 35678999999999997 33 3344568899999999996 56653 3 267899999999999 5677653
Q ss_pred eeccccccccccCccEEecCCccchhhc
Q 036269 422 VNIAKEETELFSSLEKLTLIGLPRMTDI 449 (623)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~c~~l~~i 449 (623)
+ +..+++|+.|++++|+ ++.+
T Consensus 370 ----~--~~~l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 370 ----P--LANLTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp ----G--GTTCTTCCEEECCCEE-EECC
T ss_pred ----h--hhcCCCCCEEeccCCc-ccCC
Confidence 2 6779999999999994 4443
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2e-26 Score=231.67 Aligned_cols=304 Identities=17% Similarity=0.212 Sum_probs=159.9
Q ss_pred CCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcE
Q 036269 33 NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT 112 (623)
Q Consensus 33 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~ 112 (623)
..++++++|+++++.+..++....+++|++|++++|.+.+++. +.++++|++|++++|.+ ..++ .+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i---~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI---TDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCCG-GGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcc---cCch-HHcCCCcCCE
Confidence 3445555566655555555443355555555555555555444 45555555555555555 3332 3555555555
Q ss_pred EeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccc
Q 036269 113 LSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 113 L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 192 (623)
|++++|. +..+..+..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++++|.+.
T Consensus 115 L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred EECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccc
Confidence 5555555 54444455555555555555533322223555555555555552 2333333 445555555555555441
Q ss_pred cccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhccccccccee
Q 036269 193 WQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAM 272 (623)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 272 (623)
.. ..+..+++|+.+++++|.+..++....+
T Consensus 191 ------------~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------- 220 (347)
T 4fmz_A 191 ------------DI-SPLASLTSLHYFTAYVNQITDITPVANM------------------------------------- 220 (347)
T ss_dssp ------------CC-GGGGGCTTCCEEECCSSCCCCCGGGGGC-------------------------------------
T ss_pred ------------cc-ccccCCCccceeecccCCCCCCchhhcC-------------------------------------
Confidence 11 1144444555555544443222211122
Q ss_pred eeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccccccccccccee
Q 036269 273 GLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWL 352 (623)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 352 (623)
++|++|++++|... ...+ ...+++|++|++++| .++.+. ....+++|+.|
T Consensus 221 -------------------~~L~~L~l~~n~l~-~~~~---~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L 270 (347)
T 4fmz_A 221 -------------------TRLNSLKIGNNKIT-DLSP---LANLSQLTWLEIGTN-QISDIN------AVKDLTKLKML 270 (347)
T ss_dssp -------------------TTCCEEECCSSCCC-CCGG---GTTCTTCCEEECCSS-CCCCCG------GGTTCTTCCEE
T ss_pred -------------------CcCCEEEccCCccC-CCcc---hhcCCCCCEEECCCC-ccCCCh------hHhcCCCcCEE
Confidence 45566666555422 1111 245677777777777 444432 34456677777
Q ss_pred ecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccc
Q 036269 353 MIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELF 432 (623)
Q Consensus 353 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~ 432 (623)
++++|. ++.+ .....+++|+.|++++| .+++..+ ..+..+++|++|++++ +.++++ +. +..+
T Consensus 271 ~l~~n~-l~~~----~~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~-n~l~~~---------~~-~~~l 332 (347)
T 4fmz_A 271 NVGSNQ-ISDI----SVLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQ-NHITDI---------RP-LASL 332 (347)
T ss_dssp ECCSSC-CCCC----GGGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCS-SSCCCC---------GG-GGGC
T ss_pred EccCCc-cCCC----hhhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccC-Cccccc---------cC-hhhh
Confidence 777764 3332 11345677777777775 4444333 3367777788888877 446554 22 4567
Q ss_pred cCccEEecCCcc
Q 036269 433 SSLEKLTLIGLP 444 (623)
Q Consensus 433 ~~L~~L~l~~c~ 444 (623)
++|++|++++|+
T Consensus 333 ~~L~~L~l~~N~ 344 (347)
T 4fmz_A 333 SKMDSADFANQV 344 (347)
T ss_dssp TTCSEESSSCC-
T ss_pred hccceeehhhhc
Confidence 777777777763
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1e-26 Score=243.03 Aligned_cols=367 Identities=17% Similarity=0.178 Sum_probs=265.7
Q ss_pred CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC-chhhhccccCcEEecc
Q 036269 38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-PSSLSFLINLRTLSLH 116 (623)
Q Consensus 38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p~~~~~l~~L~~L~l~ 116 (623)
-+.++.+++.++.+|. . .++|++|++++|.+..+++..|.++++|++|++++|.+. ..+ +..+..+++|++|+++
T Consensus 12 ~~~~~c~~~~l~~lp~-l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L-PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCSSCCC-C-CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcccCCC-C-CCccCEEEecCCccCcCChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCC
Confidence 3467788888888887 2 378999999999999765555799999999999999884 355 4568999999999999
Q ss_pred CCcCCCCc--ccccCCcCCcEEEcCCCCCcc-cccc--ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 117 DCQHFGDL--SLIGELSLLEILDLSESDVSE-IPVS--FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
+|. +..+ ..++++++|++|++++|.++. .|.. +.++++|++|++++|......|..++.++++|++|++++|.+
T Consensus 88 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999 8665 578999999999999999984 4544 899999999999996544444655588999999999999987
Q ss_pred ccccccccccccccccccccCC--CCccEEEeecCCCccCCCc----------ccccCccEEEEEeCCCCCCCcchhhhh
Q 036269 192 HWQFENEDDSRSNAKFIELGAL--SRLTSLHIDIPEGEIMPSD----------MSFQNLTSFSITIGGPEEVPLSDFIEV 259 (623)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~----------~~~~~L~~L~l~~~~~~~~~~~~~~~~ 259 (623)
. ...+..+..+ .+|+.|+++++.+..++.. ..+++|+.|+++++......+..+..
T Consensus 167 ~-----------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~- 234 (455)
T 3v47_A 167 K-----------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD- 234 (455)
T ss_dssp S-----------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH-
T ss_pred c-----------ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc-
Confidence 4 2334445444 6889999999987666543 24578999999887643322111111
Q ss_pred hhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCccccc----------ccccccCccCccEEEEeccc
Q 036269 260 FSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIV----------SDLAHDGFNELMFLAIVGCN 329 (623)
Q Consensus 260 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~ 329 (623)
.... .+++.|+++++....... ..+.....++|+.|+++++
T Consensus 235 ---~~~~-------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n- 285 (455)
T 3v47_A 235 ---AIAG-------------------------TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS- 285 (455)
T ss_dssp ---HTTT-------------------------CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-
T ss_pred ---cccc-------------------------cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-
Confidence 1111 345555555443221110 0111113468999999999
Q ss_pred CceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEec
Q 036269 330 EMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEG 409 (623)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 409 (623)
.+..+... ....+++|+.|+++++. +....... .+.+++|+.|++++| .+++..+. .+..+++|++|++++
T Consensus 286 ~l~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 286 KIFALLKS----VFSHFTDLEQLTLAQNE-INKIDDNA--FWGLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSY 356 (455)
T ss_dssp CCCEECTT----TTTTCTTCCEEECTTSC-CCEECTTT--TTTCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCS
T ss_pred cccccchh----hcccCCCCCEEECCCCc-ccccChhH--hcCcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCC
Confidence 55554332 45668899999999987 43332212 346899999999995 66664444 478899999999999
Q ss_pred cccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCC
Q 036269 410 CELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCD 471 (623)
Q Consensus 410 c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~ 471 (623)
+.++.+. +..+..+++|++|++++| .++.+.. ..+..+++|++|++++++
T Consensus 357 -N~l~~~~--------~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 357 -NHIRALG--------DQSFLGLPNLKELALDTN-QLKSVPD--GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -SCCCEEC--------TTTTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred -CcccccC--------hhhccccccccEEECCCC-ccccCCH--hHhccCCcccEEEccCCC
Confidence 6777764 566778999999999998 5766522 234678999999999953
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=6e-27 Score=242.72 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=148.6
Q ss_pred CCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccC
Q 036269 31 SINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINL 110 (623)
Q Consensus 31 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L 110 (623)
.+..++++++|++++|.++.+|....+++|++|++++|.+..++ +..+++|++|++++|.+ ..++ +..+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l---~~~~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL---TNLD--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCC---SCCC--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCC---ceee--cCCCCcC
Confidence 34557889999999999988875448899999999999988775 58899999999999988 4554 7788999
Q ss_pred cEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccc
Q 036269 111 RTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTF 190 (623)
Q Consensus 111 ~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 190 (623)
++|++++|. +..++ ++.+++|++|++++|.++.++ ++++++|++|++++|..++.++ +..+++|+.|++++|.
T Consensus 109 ~~L~L~~N~-l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 109 TYLNCDTNK-LTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CEEECCSSC-CSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred CEEECCCCc-CCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc
Confidence 999999998 87765 788899999999999888875 7888999999999876777774 6788899999999887
Q ss_pred cccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCC
Q 036269 191 CHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGG 247 (623)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 247 (623)
+. .++ ++.+++|+.|++++|.+..++ ...+++|+.|+++++.
T Consensus 182 l~------------~l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 182 IT------------ELD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CC------------CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSC
T ss_pred cc------------eec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCc
Confidence 72 222 778888899998888776552 3455666666666554
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=6.7e-27 Score=242.16 Aligned_cols=343 Identities=18% Similarity=0.169 Sum_probs=187.7
Q ss_pred CCCcEEEcccCCcccccccC-CCCCcceEEccCCCCC-CCChhhHhCCCcc-------------cEEEccCCcccccCCC
Q 036269 36 EDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDL-------------KVLDLGGSGVFSLFSL 100 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~L-------------r~L~l~~~~~~~~~~l 100 (623)
..++.++++++.++.+|+.+ ++++|++|++++|.+. .+|..+ .++++| ++|++++|.+ ..+
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l---~~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGL---SSL 86 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCC---SCC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCcc---ccC
Confidence 56777777777777777666 6777777777777665 555543 555543 7777777776 455
Q ss_pred chhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhcccc
Q 036269 101 PSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRK 180 (623)
Q Consensus 101 p~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~ 180 (623)
|.. .++|++|++++|. ++.++. .+.+|++|++++|.++.+|.. .++|++|++++| .++.+| + ++++++
T Consensus 87 p~~---~~~L~~L~l~~n~-l~~lp~--~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~-~~~l~~ 154 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNS-LTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLP-E-LQNSSF 154 (454)
T ss_dssp CSC---CTTCSEEECCSSC-CSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCC-C-CTTCTT
T ss_pred CCC---cCCCCEEEccCCc-CCcccc--ccCCCcEEECCCCccCcccCC---CCCCCEEECcCC-CCCCCc-c-cCCCCC
Confidence 542 3567777777776 655532 236677777777777665532 157777777773 444566 3 677777
Q ss_pred CcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhh
Q 036269 181 LEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVF 260 (623)
Q Consensus 181 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 260 (623)
|++|++++|.+. .++.. ..+|+.|++++|.+..+|....+++|+.|+++++.....+
T Consensus 155 L~~L~l~~N~l~------------~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~-------- 211 (454)
T 1jl5_A 155 LKIIDVDNNSLK------------KLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP-------- 211 (454)
T ss_dssp CCEEECCSSCCS------------CCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC--------
T ss_pred CCEEECCCCcCc------------ccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCC--------
Confidence 777777777652 12221 2367777777777666664466677777776665433221
Q ss_pred hhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccc
Q 036269 261 SRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLER 340 (623)
Q Consensus 261 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 340 (623)
..+ ++|++|++++|.. ..+ +.+ ..+++|+.|++++| .++.++.
T Consensus 212 ---------------------~~~-------~~L~~L~l~~n~l-~~l-p~~--~~l~~L~~L~l~~N-~l~~l~~---- 254 (454)
T 1jl5_A 212 ---------------------DLP-------LSLESIVAGNNIL-EEL-PEL--QNLPFLTTIYADNN-LLKTLPD---- 254 (454)
T ss_dssp ---------------------CCC-------TTCCEEECCSSCC-SSC-CCC--TTCTTCCEEECCSS-CCSSCCS----
T ss_pred ---------------------CCc-------CcccEEECcCCcC-Ccc-ccc--CCCCCCCEEECCCC-cCCcccc----
Confidence 111 3677777776643 232 232 46677777777776 4443321
Q ss_pred cccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeecc
Q 036269 341 TLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIE 420 (623)
Q Consensus 341 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~ 420 (623)
.+++|+.|+++++. ++. +|. ..++|+.|++++| .+++ +|.. .++|++|++++ +.++.+
T Consensus 255 ----~~~~L~~L~l~~N~-l~~-----l~~-~~~~L~~L~ls~N-~l~~-l~~~----~~~L~~L~l~~-N~l~~i---- 312 (454)
T 1jl5_A 255 ----LPPSLEALNVRDNY-LTD-----LPE-LPQSLTFLDVSEN-IFSG-LSEL----PPNLYYLNASS-NEIRSL---- 312 (454)
T ss_dssp ----CCTTCCEEECCSSC-CSC-----CCC-CCTTCCEEECCSS-CCSE-ESCC----CTTCCEEECCS-SCCSEE----
T ss_pred ----cccccCEEECCCCc-ccc-----cCc-ccCcCCEEECcCC-ccCc-ccCc----CCcCCEEECcC-CcCCcc----
Confidence 24677777777765 222 221 2367777777774 4444 2211 15677777777 555544
Q ss_pred ceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhccc
Q 036269 421 RVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNR 496 (623)
Q Consensus 421 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~ 496 (623)
+. ..++|++|++++| .++.+ +. .+++|++|++++| .++.+ |. .+++|++|++.+|.
T Consensus 313 -----~~---~~~~L~~L~Ls~N-~l~~l---p~---~~~~L~~L~L~~N-~l~~l-p~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 313 -----CD---LPPSLEELNVSNN-KLIEL---PA---LPPRLERLIASFN-HLAEV-PE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp -----CC---CCTTCCEEECCSS-CCSCC---CC---CCTTCCEEECCSS-CCSCC-CC---CCTTCCEEECCSSC
T ss_pred -----cC---CcCcCCEEECCCC-ccccc---cc---cCCcCCEEECCCC-ccccc-cc---hhhhccEEECCCCC
Confidence 11 1247777777776 45544 21 1467777777774 55554 22 34566666666653
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=6.2e-27 Score=242.38 Aligned_cols=315 Identities=19% Similarity=0.133 Sum_probs=176.4
Q ss_pred cccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccC-------------cEEeccCC
Q 036269 52 HEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINL-------------RTLSLHDC 118 (623)
Q Consensus 52 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L-------------~~L~l~~~ 118 (623)
|+.+..++|+.|++++|.+..+|.++ +++++|++|++++|.+. +.+|..++.+++| ++|++++|
T Consensus 5 p~~~~~~~L~~L~l~~n~l~~iP~~i-~~L~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNLTEMPVEA-ENVKSKTEYYNAWSEWE--RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHH--HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccccccchhhhcccCchhhCChhH-hcccchhhhhccCCccc--ccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 34446688999999999998998875 99999999999999986 6899888887765 88888888
Q ss_pred cCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccc
Q 036269 119 QHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENE 198 (623)
Q Consensus 119 ~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 198 (623)
. ++.++.+ .++|++|++++|.++.+|.. +++|++|++++ +.+..++.. .++|++|++++|.+.
T Consensus 82 ~-l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~-n~l~~l~~~----~~~L~~L~L~~n~l~------ 144 (454)
T 1jl5_A 82 G-LSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDN-NNLKALSDL----PPLLEYLGVSNNQLE------ 144 (454)
T ss_dssp C-CSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCS-SCCSCCCSC----CTTCCEEECCSSCCS------
T ss_pred c-cccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCC-CccCcccCC----CCCCCEEECcCCCCC------
Confidence 7 7665432 36788888888888877743 36788888887 445555531 157888888888762
Q ss_pred cccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeecccc
Q 036269 199 DDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDM 278 (623)
Q Consensus 199 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 278 (623)
.++ .++++++|+.|++++|.+..+|.. ..+|+.|+++++.....+
T Consensus 145 ------~lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-------------------------- 189 (454)
T 1jl5_A 145 ------KLP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-------------------------- 189 (454)
T ss_dssp ------SCC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--------------------------
T ss_pred ------CCc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--------------------------
Confidence 234 577888888888888877666543 346777776665432211
Q ss_pred ccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCc
Q 036269 279 RISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNR 358 (623)
Q Consensus 279 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 358 (623)
. +.. +++|++|++++|... . ++. ..++|+.|++++| .++.++ ....+++|+.|+++++.
T Consensus 190 ------~-~~~-l~~L~~L~l~~N~l~-~-l~~----~~~~L~~L~l~~n-~l~~lp------~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 190 ------E-LQN-LPFLTAIYADNNSLK-K-LPD----LPLSLESIVAGNN-ILEELP------ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp ------C-CTT-CTTCCEEECCSSCCS-S-CCC----CCTTCCEEECCSS-CCSSCC------CCTTCTTCCEEECCSSC
T ss_pred ------c-ccC-CCCCCEEECCCCcCC-c-CCC----CcCcccEEECcCC-cCCccc------ccCCCCCCCEEECCCCc
Confidence 0 111 156777777666532 1 111 1346777777777 444443 13346677777777664
Q ss_pred ccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEE
Q 036269 359 NFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKL 438 (623)
Q Consensus 359 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L 438 (623)
++. +|. .+++|+.|++++| .+++ +|.. +++|++|++++ +.++.+ +. ..++|++|
T Consensus 249 -l~~-----l~~-~~~~L~~L~l~~N-~l~~-l~~~----~~~L~~L~ls~-N~l~~l---------~~---~~~~L~~L 302 (454)
T 1jl5_A 249 -LKT-----LPD-LPPSLEALNVRDN-YLTD-LPEL----PQSLTFLDVSE-NIFSGL---------SE---LPPNLYYL 302 (454)
T ss_dssp -CSS-----CCS-CCTTCCEEECCSS-CCSC-CCCC----CTTCCEEECCS-SCCSEE---------SC---CCTTCCEE
T ss_pred -CCc-----ccc-cccccCEEECCCC-cccc-cCcc----cCcCCEEECcC-CccCcc---------cC---cCCcCCEE
Confidence 222 221 2367777777764 4444 3432 36677777777 455543 11 13567777
Q ss_pred ecCCccchhhcccCCCcccccCCccEEEEEcCCCccee
Q 036269 439 TLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQV 476 (623)
Q Consensus 439 ~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~ 476 (623)
++++| .++.+.. ..++|++|++++ ++++.+
T Consensus 303 ~l~~N-~l~~i~~------~~~~L~~L~Ls~-N~l~~l 332 (454)
T 1jl5_A 303 NASSN-EIRSLCD------LPPSLEELNVSN-NKLIEL 332 (454)
T ss_dssp ECCSS-CCSEECC------CCTTCCEEECCS-SCCSCC
T ss_pred ECcCC-cCCcccC------CcCcCCEEECCC-Cccccc
Confidence 77766 4444311 124677777766 344443
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=8.8e-26 Score=230.60 Aligned_cols=152 Identities=16% Similarity=0.292 Sum_probs=111.8
Q ss_pred CCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCc
Q 036269 55 LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELS 131 (623)
Q Consensus 55 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~ 131 (623)
..+++++.|+++++.+..+|..+|..+++|++|++++|.+ ..++ ..+..+++|++|++++|. +..+ ..+++++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVP 117 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc---cccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCC
Confidence 3567888888888888888888788888899999888888 4444 467888888888888887 7665 4577888
Q ss_pred CCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccc
Q 036269 132 LLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIEL 210 (623)
Q Consensus 132 ~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 210 (623)
+|++|++++|.++.+|.. ++++++|++|++++| .+..++...+.++++|++|++++|.+. .. .+
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~--~~ 182 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT------------HV--DL 182 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCS------------BC--CG
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCC------------cc--cc
Confidence 888888888888877765 477888888888884 455555545777778888887777652 11 24
Q ss_pred cCCCCccEEEeecCC
Q 036269 211 GALSRLTSLHIDIPE 225 (623)
Q Consensus 211 ~~l~~L~~L~l~~~~ 225 (623)
+.+++|+.|++++|.
T Consensus 183 ~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 183 SLIPSLFHANVSYNL 197 (390)
T ss_dssp GGCTTCSEEECCSSC
T ss_pred ccccccceeeccccc
Confidence 455666666665554
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1e-25 Score=226.51 Aligned_cols=293 Identities=20% Similarity=0.269 Sum_probs=219.8
Q ss_pred eecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269 20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS 99 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~ 99 (623)
...+..+.+++.+..++++++|++++|.++.++....+++|++|++++|.+..++. +.++++|++|++++|.+ ..
T Consensus 50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i---~~ 124 (347)
T 4fmz_A 50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNI---SD 124 (347)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCC---CC
T ss_pred EEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcc---cC
Confidence 33456677888888999999999999999999885599999999999999988764 79999999999999999 66
Q ss_pred CchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccc
Q 036269 100 LPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR 179 (623)
Q Consensus 100 lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~ 179 (623)
++. +..+++|++|++++|..+..+..+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..++
T Consensus 125 ~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~ 199 (347)
T 4fmz_A 125 ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLT 199 (347)
T ss_dssp CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCT
T ss_pred chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCC
Confidence 666 889999999999999746777779999999999999999998775 889999999999994 5667775 78999
Q ss_pred cCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhh
Q 036269 180 KLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEV 259 (623)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 259 (623)
+|+.+++++|.+. .. ..++.+++|+.|++++|.+..++....+++|+.|+++
T Consensus 200 ~L~~L~l~~n~l~------------~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~--------------- 251 (347)
T 4fmz_A 200 SLHYFTAYVNQIT------------DI-TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIG--------------- 251 (347)
T ss_dssp TCCEEECCSSCCC------------CC-GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC---------------
T ss_pred ccceeecccCCCC------------CC-chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECC---------------
Confidence 9999999999772 11 2278899999999999987665544444555555544
Q ss_pred hhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccc
Q 036269 260 FSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLE 339 (623)
Q Consensus 260 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 339 (623)
+|.. ..+ +.+ ..+++|+.|++++| .++.++
T Consensus 252 -----------------------------------------~n~l-~~~-~~~--~~l~~L~~L~l~~n-~l~~~~---- 281 (347)
T 4fmz_A 252 -----------------------------------------TNQI-SDI-NAV--KDLTKLKMLNVGSN-QISDIS---- 281 (347)
T ss_dssp -----------------------------------------SSCC-CCC-GGG--TTCTTCCEEECCSS-CCCCCG----
T ss_pred -----------------------------------------CCcc-CCC-hhH--hcCCCcCEEEccCC-ccCCCh----
Confidence 3321 111 111 34566777777766 444432
Q ss_pred ccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEec
Q 036269 340 RTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEG 409 (623)
Q Consensus 340 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 409 (623)
....+++|+.|++++|. +....... .+.+++|+.|++++|+ +++..| +..+++|++|++++
T Consensus 282 --~~~~l~~L~~L~L~~n~-l~~~~~~~--l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 282 --VLNNLSQLNSLFLNNNQ-LGNEDMEV--IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFAN 342 (347)
T ss_dssp --GGGGCTTCSEEECCSSC-CCGGGHHH--HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSC
T ss_pred --hhcCCCCCCEEECcCCc-CCCcChhH--hhccccCCEEEccCCc-cccccC---hhhhhccceeehhh
Confidence 34456777777777775 32221111 2356788888888854 555333 45778888888887
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.9e-25 Score=233.30 Aligned_cols=191 Identities=24% Similarity=0.267 Sum_probs=110.8
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC 118 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~ 118 (623)
+.++.+++.++.+|.... ++++.|++++|.+..+++..|.++++|++|++++|.+. +..|..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC--EeChhhhhCCccCCEEECCCC
Confidence 445555566666665442 45666777777666555444566777777777776663 333556666677777777766
Q ss_pred cCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccc
Q 036269 119 QHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQF 195 (623)
Q Consensus 119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 195 (623)
. +..+ ..+.++++|++|++++|.+..+ |..+.++++|++|++++ +.+..++...+.++++|++|++++|.+.
T Consensus 91 ~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~--- 165 (477)
T 2id5_A 91 R-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLT--- 165 (477)
T ss_dssp C-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCS---
T ss_pred c-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCc---
Confidence 6 6555 3456666777777777666643 44566666777777766 3344444333666666666666666552
Q ss_pred ccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEe
Q 036269 196 ENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITI 245 (623)
Q Consensus 196 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~ 245 (623)
......++.+++|+.|++++|.+..++.. ..+++|+.|+++.
T Consensus 166 --------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 166 --------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp --------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred --------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 12223355666666666666655444332 3344444444443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=9.2e-25 Score=223.03 Aligned_cols=303 Identities=18% Similarity=0.220 Sum_probs=216.5
Q ss_pred CCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269 34 TFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR 111 (623)
Q Consensus 34 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~ 111 (623)
.+.+++.++++++.++.+|... .+++|++|++++|.+..++...|.++++|++|++++|.+. ...|..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC--cCCHHHhcCCCCCC
Confidence 4688999999999999999864 7999999999999999777766899999999999999994 34455689999999
Q ss_pred EEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269 112 TLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188 (623)
Q Consensus 112 ~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~ 188 (623)
+|++++|. +..+ ..++++++|++|++++|.++.++ ..+.++++|++|++++ +.++.++ +..+++|+.|++++
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCS
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccc
Confidence 99999998 8877 34689999999999999999764 5689999999999999 5566665 67789999999999
Q ss_pred cccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccc
Q 036269 189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC 268 (623)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (623)
|.+. .+...++|+.|++++|.+..++.. ..+
T Consensus 196 n~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~-------------------------------- 226 (390)
T 3o6n_A 196 NLLS----------------TLAIPIAVEELDASHNSINVVRGP-VNV-------------------------------- 226 (390)
T ss_dssp SCCS----------------EEECCSSCSEEECCSSCCCEEECC-CCS--------------------------------
T ss_pred cccc----------------ccCCCCcceEEECCCCeeeecccc-ccc--------------------------------
Confidence 8762 233456788999888876544322 123
Q ss_pred cceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccc
Q 036269 269 SRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLK 348 (623)
Q Consensus 269 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 348 (623)
+|+.|++++|.... .+.+ ..+++|++|+++++ .++.+... ....+++
T Consensus 227 ------------------------~L~~L~l~~n~l~~--~~~l--~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l~~ 273 (390)
T 3o6n_A 227 ------------------------ELTILKLQHNNLTD--TAWL--LNYPGLVEVDLSYN-ELEKIMYH----PFVKMQR 273 (390)
T ss_dssp ------------------------SCCEEECCSSCCCC--CGGG--GGCTTCSEEECCSS-CCCEEESG----GGTTCSS
T ss_pred ------------------------cccEEECCCCCCcc--cHHH--cCCCCccEEECCCC-cCCCcChh----Hcccccc
Confidence 34444444443211 1111 34567777777776 44443222 3445667
Q ss_pred cceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccc
Q 036269 349 LEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEE 428 (623)
Q Consensus 349 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~ 428 (623)
|+.|+++++. ++.+.. ....+++|+.|++++| .++. +|.. +..+++|++|++++ +.++++ +
T Consensus 274 L~~L~L~~n~-l~~~~~---~~~~l~~L~~L~L~~n-~l~~-~~~~-~~~l~~L~~L~L~~-N~i~~~---------~-- 334 (390)
T 3o6n_A 274 LERLYISNNR-LVALNL---YGQPIPTLKVLDLSHN-HLLH-VERN-QPQFDRLENLYLDH-NSIVTL---------K-- 334 (390)
T ss_dssp CCEEECCSSC-CCEEEC---SSSCCTTCCEEECCSS-CCCC-CGGG-HHHHTTCSEEECCS-SCCCCC---------C--
T ss_pred CCEEECCCCc-CcccCc---ccCCCCCCCEEECCCC-ccee-cCcc-ccccCcCCEEECCC-Ccccee---------C--
Confidence 7777777665 333211 1135677777777775 4554 4544 56777888888887 556554 2
Q ss_pred cccccCccEEecCCcc
Q 036269 429 TELFSSLEKLTLIGLP 444 (623)
Q Consensus 429 ~~~~~~L~~L~l~~c~ 444 (623)
...+++|++|++++++
T Consensus 335 ~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred chhhccCCEEEcCCCC
Confidence 3456777777777764
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.6e-25 Score=236.44 Aligned_cols=153 Identities=16% Similarity=0.248 Sum_probs=118.1
Q ss_pred CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCC
Q 036269 56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLL 133 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L 133 (623)
.+.+++.+++++|.+..+|..+|..+++|++|++++|.+. +..|..+..+++|++|++++|. +..+ ..++++++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC--CCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCC
Confidence 5678899999999888888888888999999999999884 3334578888999999999988 7666 457888899
Q ss_pred cEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccC
Q 036269 134 EILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGA 212 (623)
Q Consensus 134 ~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (623)
++|++++|.++.+|.. ++++++|++|++++| .+..+++..+.++++|++|++++|.+. .. .++.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~--~~~~ 190 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT------------HV--DLSL 190 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCS------------BC--CGGG
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCC------------Cc--Chhh
Confidence 9999999988888765 478888999998884 455565555788888888888888762 11 2455
Q ss_pred CCCccEEEeecCCC
Q 036269 213 LSRLTSLHIDIPEG 226 (623)
Q Consensus 213 l~~L~~L~l~~~~~ 226 (623)
+++|+.|++++|.+
T Consensus 191 l~~L~~L~l~~n~l 204 (597)
T 3oja_B 191 IPSLFHANVSYNLL 204 (597)
T ss_dssp CTTCSEEECCSSCC
T ss_pred hhhhhhhhcccCcc
Confidence 66777777766543
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.1e-24 Score=222.37 Aligned_cols=198 Identities=17% Similarity=0.135 Sum_probs=167.3
Q ss_pred eecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269 20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS 99 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~ 99 (623)
...++.+..+|.+..++++++|++++|.++.++ ...+++|++|++++|.+..++ +.++++|++|++++|.+ ..
T Consensus 48 ~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l---~~ 120 (457)
T 3bz5_A 48 DCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL---TK 120 (457)
T ss_dssp ECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCC---SC
T ss_pred EccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcC---Ce
Confidence 334566777888889999999999999999886 448999999999999999875 68999999999999999 55
Q ss_pred CchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCC-CCccccccccCCCccCEEeccCCCCCCcCchhhhhcc
Q 036269 100 LPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSES-DVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRL 178 (623)
Q Consensus 100 lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l 178 (623)
+| +..+++|++|++++|. ++.+ .++.+++|++|++++| .+..+ .++.+++|++|++++ +.++.+| +..+
T Consensus 121 l~--~~~l~~L~~L~l~~N~-l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~---l~~l 190 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNT-LTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELD---VSQN 190 (457)
T ss_dssp CC--CTTCTTCCEEECTTSC-CSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCC---CTTC
T ss_pred ec--CCCCCcCCEEECCCCc-ccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccceec---cccC
Confidence 65 7899999999999998 8776 4889999999999999 45555 488999999999999 5666777 7889
Q ss_pred ccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCC
Q 036269 179 RKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPE 249 (623)
Q Consensus 179 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 249 (623)
++|+.|++++|.+. .. .++.+++|+.|++++|.+..+| ...+++|+.|+++++...
T Consensus 191 ~~L~~L~l~~N~l~------------~~--~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 191 KLLNRLNCDTNNIT------------KL--DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp TTCCEEECCSSCCS------------CC--CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCS
T ss_pred CCCCEEECcCCcCC------------ee--ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCC
Confidence 99999999999873 12 4788999999999999988776 556778888888776543
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=4.5e-24 Score=224.16 Aligned_cols=306 Identities=22% Similarity=0.211 Sum_probs=215.1
Q ss_pred eecCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCccccc
Q 036269 20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~ 97 (623)
...+..+..+|. ...+.++.|++++|.++.+++ .+ .+++|+.|++++|.+..+++..|.++++|++|++++|.+
T Consensus 17 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--- 92 (477)
T 2id5_A 17 LCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--- 92 (477)
T ss_dssp ECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---
T ss_pred EeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC---
Confidence 334566777874 455789999999999998865 34 899999999999999977555679999999999999999
Q ss_pred CCCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchh
Q 036269 98 FSLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRG 173 (623)
Q Consensus 98 ~~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~ 173 (623)
..+|. .+.++++|++|++++|. +..+ ..+..+++|++|++++|.+..+ |..+..+++|++|++++ +.++.++..
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~ 170 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTE 170 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHH
T ss_pred CccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChh
Confidence 66665 47899999999999998 8665 5789999999999999999865 56899999999999999 467778877
Q ss_pred hhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCC-CccCCCc-ccccCccEEEEEeCCCCCC
Q 036269 174 VLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE-GEIMPSD-MSFQNLTSFSITIGGPEEV 251 (623)
Q Consensus 174 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~~~~L~~L~l~~~~~~~~ 251 (623)
.+..+++|+.|++++|.+. ......+..+++|+.|++++|. ...++.. ....+|+.|+++++...
T Consensus 171 ~l~~l~~L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-- 237 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNIN-----------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-- 237 (477)
T ss_dssp HHTTCTTCCEEEEESCCCC-----------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC--
T ss_pred HhcccCCCcEEeCCCCcCc-----------EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc--
Confidence 7899999999999999873 3334568889999999999976 4445444 44457888887766433
Q ss_pred CcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCc
Q 036269 252 PLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEM 331 (623)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 331 (623)
.+|......+++|+.|++++|.. ..+.+. .+..+++|+.|+++++ .+
T Consensus 238 ------------------------------~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~-~~~~l~~L~~L~L~~n-~l 284 (477)
T 2id5_A 238 ------------------------------AVPYLAVRHLVYLRFLNLSYNPI-STIEGS-MLHELLRLQEIQLVGG-QL 284 (477)
T ss_dssp ------------------------------SCCHHHHTTCTTCCEEECCSSCC-CEECTT-SCTTCTTCCEEECCSS-CC
T ss_pred ------------------------------ccCHHHhcCccccCeeECCCCcC-CccChh-hccccccCCEEECCCC-cc
Confidence 22222222225667777766652 222111 1245566666666666 34
Q ss_pred eeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeec
Q 036269 332 KYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDC 384 (623)
Q Consensus 332 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 384 (623)
..+... ....+++|+.|+++++. ++.+.... ...+++|+.|+++++
T Consensus 285 ~~~~~~----~~~~l~~L~~L~L~~N~-l~~~~~~~--~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 285 AVVEPY----AFRGLNYLRVLNVSGNQ-LTTLEESV--FHSVGNLETLILDSN 330 (477)
T ss_dssp SEECTT----TBTTCTTCCEEECCSSC-CSCCCGGG--BSCGGGCCEEECCSS
T ss_pred ceECHH----HhcCcccCCEEECCCCc-CceeCHhH--cCCCcccCEEEccCC
Confidence 433221 23345556666665553 22221111 123455555555553
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.4e-24 Score=227.83 Aligned_cols=303 Identities=19% Similarity=0.229 Sum_probs=222.0
Q ss_pred CCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269 34 TFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR 111 (623)
Q Consensus 34 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~ 111 (623)
.+..++.++++++.++.+|+.. .+++|++|++++|.+..+++..|..+++|++|++++|.+. +..|..+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC--CCCHHHHcCCCCCC
Confidence 3578899999999999999865 7999999999999999777666799999999999999994 34445679999999
Q ss_pred EEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269 112 TLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188 (623)
Q Consensus 112 ~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~ 188 (623)
+|++++|. +..+ ..++++++|++|++++|.+..++ ..++++++|++|++++ +.+..++ +..+++|+.|++++
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCS
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhccc
Confidence 99999998 8777 34789999999999999999665 5799999999999999 4566665 57789999999999
Q ss_pred cccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccc
Q 036269 189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC 268 (623)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (623)
|.+. .+....+|+.|++++|.+..++... .+
T Consensus 202 n~l~----------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~-------------------------------- 232 (597)
T 3oja_B 202 NLLS----------------TLAIPIAVEELDASHNSINVVRGPV-NV-------------------------------- 232 (597)
T ss_dssp SCCS----------------EEECCTTCSEEECCSSCCCEEECSC-CS--------------------------------
T ss_pred Cccc----------------cccCCchhheeeccCCccccccccc-CC--------------------------------
Confidence 8762 2345567899999888765443321 12
Q ss_pred cceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccc
Q 036269 269 SRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLK 348 (623)
Q Consensus 269 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 348 (623)
+|+.|++++|.... ++.+ ..+++|+.|++++| .+..+... ....+++
T Consensus 233 ------------------------~L~~L~L~~n~l~~--~~~l--~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l~~ 279 (597)
T 3oja_B 233 ------------------------ELTILKLQHNNLTD--TAWL--LNYPGLVEVDLSYN-ELEKIMYH----PFVKMQR 279 (597)
T ss_dssp ------------------------CCCEEECCSSCCCC--CGGG--GGCTTCSEEECCSS-CCCEEESG----GGTTCSS
T ss_pred ------------------------CCCEEECCCCCCCC--Chhh--ccCCCCCEEECCCC-ccCCCCHH----HhcCccC
Confidence 34444444443211 1112 44667777777777 44443222 3455677
Q ss_pred cceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccc
Q 036269 349 LEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEE 428 (623)
Q Consensus 349 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~ 428 (623)
|+.|+++++. ++.+. ...+.+++|+.|++++| .++. +|.. +..+++|+.|++++ +.++.+ +
T Consensus 280 L~~L~Ls~N~-l~~l~---~~~~~l~~L~~L~Ls~N-~l~~-i~~~-~~~l~~L~~L~L~~-N~l~~~---------~-- 340 (597)
T 3oja_B 280 LERLYISNNR-LVALN---LYGQPIPTLKVLDLSHN-HLLH-VERN-QPQFDRLENLYLDH-NSIVTL---------K-- 340 (597)
T ss_dssp CCEEECTTSC-CCEEE---CSSSCCTTCCEEECCSS-CCCC-CGGG-HHHHTTCSEEECCS-SCCCCC---------C--
T ss_pred CCEEECCCCC-CCCCC---cccccCCCCcEEECCCC-CCCc-cCcc-cccCCCCCEEECCC-CCCCCc---------C--
Confidence 7777777765 33321 11235788888888885 4554 5655 67888888888888 556554 2
Q ss_pred cccccCccEEecCCcc
Q 036269 429 TELFSSLEKLTLIGLP 444 (623)
Q Consensus 429 ~~~~~~L~~L~l~~c~ 444 (623)
...+++|+.|++++|+
T Consensus 341 ~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred hhhcCCCCEEEeeCCC
Confidence 4567888888888875
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=2.1e-25 Score=241.34 Aligned_cols=410 Identities=16% Similarity=0.062 Sum_probs=235.8
Q ss_pred CCCCcceEEccCCCCC----CCC-----------hhhHhCCCcccEEEccCCcccccCCCchhhhc-ccc-CcEEeccCC
Q 036269 56 QCPRLQALFLQKNDLL----DIP-----------DPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSF-LIN-LRTLSLHDC 118 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~----~l~-----------~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~-l~~-L~~L~l~~~ 118 (623)
++++|+.|+++++... .+| ..++..+++|++|+++++.+. +..+..+.. +++ |++|++++|
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS--DLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHHGGGCCEEEEESC
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec--HHHHHHHHHhccccCcEEECcCC
Confidence 5667777777664321 111 122336788888888888764 344444544 344 888888877
Q ss_pred cCCCC--c-ccccCCcCCcEEEcCCCCCcc-----ccccccCCCccCEEeccCCCCC----CcCchhhhhccccCcEEEe
Q 036269 119 QHFGD--L-SLIGELSLLEILDLSESDVSE-----IPVSFGRLGHLRLLDLTDCYNL----ELIPRGVLSRLRKLEELYM 186 (623)
Q Consensus 119 ~~l~~--i-~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~----~~l~~~~~~~l~~L~~L~l 186 (623)
..+.. + ....++++|++|++++|.+.. ++.....+++|++|+++++... ..++. ++.++++|+.|++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L 227 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKV 227 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEEC
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEec
Confidence 63321 2 233467888888888886542 3334456778888888774332 12222 3566788888888
Q ss_pred cccccccccccccccccccccccccCCCCccEEEeecCCCc----cCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhh
Q 036269 187 SKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE----IMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFS 261 (623)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 261 (623)
++|.+ ...+..++.+++|+.|+++..... ..... ..+++|+.+.++.....
T Consensus 228 ~~~~~------------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------------ 283 (592)
T 3ogk_B 228 GDFEI------------LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN------------ 283 (592)
T ss_dssp SSCBG------------GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT------------
T ss_pred cCccH------------HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh------------
Confidence 87765 234556677788888888753211 11111 45556666655432111
Q ss_pred hcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccc
Q 036269 262 RKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERT 341 (623)
Q Consensus 262 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 341 (623)
.+|..+.. +++|++|++++|. +...........+++|++|++.++ +.. .....
T Consensus 284 --------------------~l~~~~~~-~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~~~---~~l~~ 336 (592)
T 3ogk_B 284 --------------------EMPILFPF-AAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV--IGD---RGLEV 336 (592)
T ss_dssp --------------------TGGGGGGG-GGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH---HHHHH
T ss_pred --------------------HHHHHHhh-cCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc--cCH---HHHHH
Confidence 22222222 2788888888877 332211111256788888888844 211 10001
Q ss_pred ccccccccceeeccc----------CcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEec--
Q 036269 342 LRVTLLKLEWLMIVD----------NRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEG-- 409 (623)
Q Consensus 342 ~~~~~~~L~~L~l~~----------~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~-- 409 (623)
....+++|++|++.+ |..++......+ ...+++|+.|++ +|+.+++..+......+++|+.|++++
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 334577888888884 554433211111 124788888888 457777655555444588888888873
Q ss_pred -cccceeeeeccceeccccccccccCccEEecCCccc-hhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccc
Q 036269 410 -CELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPR-MTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAA 487 (623)
Q Consensus 410 -c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L 487 (623)
|+.+++....+|. +..+..+++|+.|+++.|.. +++.. .......+++|++|++++|. ++...
T Consensus 415 ~~n~l~~~p~~~~~---~~~~~~~~~L~~L~L~~~~~~l~~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~---------- 479 (592)
T 3ogk_B 415 REERITDLPLDNGV---RSLLIGCKKLRRFAFYLRQGGLTDLG-LSYIGQYSPNVRWMLLGYVG-ESDEG---------- 479 (592)
T ss_dssp CCSCCSSCCCHHHH---HHHHHHCTTCCEEEEECCGGGCCHHH-HHHHHHSCTTCCEEEECSCC-SSHHH----------
T ss_pred CCccccCchHHHHH---HHHHHhCCCCCEEEEecCCCCccHHH-HHHHHHhCccceEeeccCCC-CCHHH----------
Confidence 5666654222222 33345688888888876653 22210 01112336788888888763 33210
Q ss_pred hhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhh
Q 036269 488 EEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEI 558 (623)
Q Consensus 488 ~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l 558 (623)
.+..+..+++|++|+|++|+ +++.........+++|+.|++++|. ++..
T Consensus 480 --------------------~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 480 --------------------LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp --------------------HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred --------------------HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 00112366889999999987 6553333445678899999999998 5543
No 42
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=5.2e-25 Score=238.37 Aligned_cols=406 Identities=17% Similarity=0.139 Sum_probs=234.0
Q ss_pred CCCCcceEEccCCCCC-CC---C-----------hhhHhCCCcccEEEccCCcccccCCCchhhh-ccccCcEEeccCCc
Q 036269 56 QCPRLQALFLQKNDLL-DI---P-----------DPFFQGMKDLKVLDLGGSGVFSLFSLPSSLS-FLINLRTLSLHDCQ 119 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~-~l---~-----------~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~ 119 (623)
++++|+.|+++++... ++ | ..++..+++|++|+++++.++ +..+..+. .+++|++|++++|.
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHCTTCCEEEEESCE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc--HHHHHHHHHhCCCCcEEeCCCcC
Confidence 5667777777776532 11 1 223456778888888887764 34444444 67788888888874
Q ss_pred CCCC--c-ccccCCcCCcEEEcCCCCCcc-----ccccccCCCccCEEeccCCCCCCcCch----hhhhccccCcEEEec
Q 036269 120 HFGD--L-SLIGELSLLEILDLSESDVSE-----IPVSFGRLGHLRLLDLTDCYNLELIPR----GVLSRLRKLEELYMS 187 (623)
Q Consensus 120 ~l~~--i-~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~l~~----~~~~~l~~L~~L~l~ 187 (623)
.+++ + ....++++|++|++++|.++. ++.....+++|+.|++++|. ..+.. .++.++++|++|+++
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecC
Confidence 3543 3 334467888888888876552 33333467788888888754 22221 223456788888887
Q ss_pred ccccccccccccccccccccccccCCCCccEEEeecCCC-------ccCCCc-ccccCccEEEEEeCCCCCCCcchhhhh
Q 036269 188 KTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG-------EIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEV 259 (623)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~ 259 (623)
+|... ...+..++.+++|+.|++..+.. ..++.. ..+++|+.+.
T Consensus 220 ~~~~~-----------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls----------------- 271 (594)
T 2p1m_B 220 RAVPL-----------EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS----------------- 271 (594)
T ss_dssp TTSCH-----------HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE-----------------
T ss_pred CCCcH-----------HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc-----------------
Confidence 76321 22445566777788877654431 111111 3344444441
Q ss_pred hhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccc
Q 036269 260 FSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLE 339 (623)
Q Consensus 260 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 339 (623)
.+.... ...++..+.. +++|++|++++|. +.+.........+++|++|++.+| +.. ...
T Consensus 272 -------------~~~~~~-~~~l~~~~~~-~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~---~~l 330 (594)
T 2p1m_B 272 -------------GFWDAV-PAYLPAVYSV-CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED---AGL 330 (594)
T ss_dssp -------------CCBTCC-GGGGGGGHHH-HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH---HHH
T ss_pred -------------CCcccc-hhhHHHHHHh-hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH---HHH
Confidence 000000 0133333333 3899999999888 443211111246789999999988 221 100
Q ss_pred ccccccccccceeecccC--------cccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEe---
Q 036269 340 RTLRVTLLKLEWLMIVDN--------RNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVE--- 408 (623)
Q Consensus 340 ~~~~~~~~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~--- 408 (623)
......+++|++|++.++ ..+++.....+ ...+++|+.|.+ +|+.+++..+......+++|+.|+++
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l-~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH-HHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH-HHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 002335788999998543 22322111111 124789999955 45777765555545578999999999
Q ss_pred --ccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCccc
Q 036269 409 --GCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAA 486 (623)
Q Consensus 409 --~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~ 486 (623)
+|+.+++.....|+ +..+..+++|++|++++ .+++... ......+++|++|++++|. ++...+..+
T Consensus 409 ~~~~~~l~~~~~~~~~---~~l~~~~~~L~~L~L~~--~l~~~~~-~~l~~~~~~L~~L~L~~~~-i~~~~~~~l----- 476 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGF---GAIVEHCKDLRRLSLSG--LLTDKVF-EYIGTYAKKMEMLSVAFAG-DSDLGMHHV----- 476 (594)
T ss_dssp TTCCCTTTCCCTHHHH---HHHHHHCTTCCEEECCS--SCCHHHH-HHHHHHCTTCCEEEEESCC-SSHHHHHHH-----
T ss_pred CCCcccccCCchhhHH---HHHHhhCCCccEEeecC--cccHHHH-HHHHHhchhccEeeccCCC-CcHHHHHHH-----
Confidence 67888754322222 23346788999999976 3443100 1111237889999999874 432211111
Q ss_pred chhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCc
Q 036269 487 AEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPT 554 (623)
Q Consensus 487 L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 554 (623)
...+++|+.|++++|+. ++.........+++|++|++++|+.
T Consensus 477 -------------------------~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 477 -------------------------LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -------------------------HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred -------------------------HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 02467788888888764 4433333455678888888888873
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2e-22 Score=200.86 Aligned_cols=167 Identities=22% Similarity=0.298 Sum_probs=86.2
Q ss_pred CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC-chhhhccccCcEEeccCCcCCCCc--ccccCCcCCcE
Q 036269 59 RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-PSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEI 135 (623)
Q Consensus 59 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~ 135 (623)
+++.++++++.+..+|..+ .++|++|++++|.+ ..+ |..+.++++|++|++++|. +..+ ..++++++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDI---SELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcC---CccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCE
Confidence 4555555555555555432 24555666666555 333 3345555666666666555 5443 34555566666
Q ss_pred EEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCC
Q 036269 136 LDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSR 215 (623)
Q Consensus 136 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 215 (623)
|++++|.++.+|..+. ++|++|++++ +.++.++...+.++++|++|++++|.+... ...+..++.+ +
T Consensus 107 L~L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l-~ 173 (332)
T 2ft3_A 107 LYISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------GFEPGAFDGL-K 173 (332)
T ss_dssp EECCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------GSCTTSSCSC-C
T ss_pred EECCCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC---------CCCcccccCC-c
Confidence 6666666555554443 5666666665 344455544455666666666666554210 1222334444 5
Q ss_pred ccEEEeecCCCccCCCcccccCccEEEEEeC
Q 036269 216 LTSLHIDIPEGEIMPSDMSFQNLTSFSITIG 246 (623)
Q Consensus 216 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 246 (623)
|+.|++++|.+..+|... .++|++|+++++
T Consensus 174 L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n 203 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPKDL-PETLNELHLDHN 203 (332)
T ss_dssp CSCCBCCSSBCSSCCSSS-CSSCSCCBCCSS
T ss_pred cCEEECcCCCCCccCccc-cCCCCEEECCCC
Confidence 666666665555444331 134444444443
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=1.9e-24 Score=233.88 Aligned_cols=440 Identities=16% Similarity=0.044 Sum_probs=219.3
Q ss_pred CCChhhHhCCCcccEEEccCCcccc-cCCCch------------hhhccccCcEEeccCCcCCCCc--ccccC-Cc-CCc
Q 036269 72 DIPDPFFQGMKDLKVLDLGGSGVFS-LFSLPS------------SLSFLINLRTLSLHDCQHFGDL--SLIGE-LS-LLE 134 (623)
Q Consensus 72 ~l~~~~~~~l~~Lr~L~l~~~~~~~-~~~lp~------------~~~~l~~L~~L~l~~~~~l~~i--~~~~~-l~-~L~ 134 (623)
..+..++..+++|++|+++++.... .+.+|. ....+++|++|++++|. +.+. ..+.. ++ +|+
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~ 141 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLE 141 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCC
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCc
Confidence 3455666788888888887753210 012221 12266777777777775 5432 33333 23 377
Q ss_pred EEEcCCCC-Cc--cccccccCCCccCEEeccCCCCCCc----CchhhhhccccCcEEEeccccccccccccccccccccc
Q 036269 135 ILDLSESD-VS--EIPVSFGRLGHLRLLDLTDCYNLEL----IPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKF 207 (623)
Q Consensus 135 ~L~l~~~~-i~--~lp~~i~~l~~L~~L~l~~~~~~~~----l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 207 (623)
+|++++|. +. .++....++++|++|++++|..... ++ .+...+++|++|++++|.+.... .....
T Consensus 142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~n~~~~~~-------~~~l~ 213 (592)
T 3ogk_B 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH-ELAQHNTSLEVLNFYMTEFAKIS-------PKDLE 213 (592)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH-HHHHHCCCCCEEECTTCCCSSCC-------HHHHH
T ss_pred EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH-HHHhcCCCccEEEeeccCCCccC-------HHHHH
Confidence 77777664 22 2333344667777777777542221 22 12456677777777766552000 01233
Q ss_pred ccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHH
Q 036269 208 IELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSW 286 (623)
Q Consensus 208 ~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 286 (623)
..+..+++|+.|++++|....++.. ..+++|+++.+.......... ..+..
T Consensus 214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~----------------------------~~~~~ 265 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP----------------------------EKYMN 265 (592)
T ss_dssp HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCT----------------------------TSSSC
T ss_pred HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchH----------------------------HHHHH
Confidence 3345667777777777665554443 555666666665321100000 00000
Q ss_pred HHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCccccccccc
Q 036269 287 IKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHG 366 (623)
Q Consensus 287 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 366 (623)
+.. +++|+.+.+.++.. ..++.+ ...+++|++|++++|. +..... ......+++|++|++.++. .+....
T Consensus 266 l~~-~~~L~~L~l~~~~~--~~l~~~-~~~~~~L~~L~Ls~~~-l~~~~~---~~~~~~~~~L~~L~L~~~~--~~~~l~ 335 (592)
T 3ogk_B 266 LVF-PRKLCRLGLSYMGP--NEMPIL-FPFAAQIRKLDLLYAL-LETEDH---CTLIQKCPNLEVLETRNVI--GDRGLE 335 (592)
T ss_dssp CCC-CTTCCEEEETTCCT--TTGGGG-GGGGGGCCEEEETTCC-CCHHHH---HHHHTTCTTCCEEEEEGGG--HHHHHH
T ss_pred hhc-cccccccCccccch--hHHHHH-HhhcCCCcEEecCCCc-CCHHHH---HHHHHhCcCCCEEeccCcc--CHHHHH
Confidence 000 14566666654321 111111 1345666666666663 221100 0023445666666665321 110000
Q ss_pred ccCCCcCCCccEEEEee----------cCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccc-cccCc
Q 036269 367 QLPAGCLSNVKRLDVRD----------CGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETE-LFSSL 435 (623)
Q Consensus 367 ~~~~~~~~~L~~L~l~~----------c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~-~~~~L 435 (623)
.+ ...+++|++|++++ |+.+++.........+++|++|++ .|+.++... ...+. .+++|
T Consensus 336 ~~-~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~--------~~~l~~~~~~L 405 (592)
T 3ogk_B 336 VL-AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNES--------LESIGTYLKNL 405 (592)
T ss_dssp HH-HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHH--------HHHHHHHCCSC
T ss_pred HH-HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHH--------HHHHHhhCCCC
Confidence 00 12345666666663 555554323333445666666666 335544321 11122 25566
Q ss_pred cEEecCC---ccchhhccc---CCCcccccCCccEEEEEcCCC-cceeccCcccCcccchhhhhhcccccccceeccccC
Q 036269 436 EKLTLIG---LPRMTDIWK---GDTQFVSLHDLKKIRVVFCDE-LRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTST 508 (623)
Q Consensus 436 ~~L~l~~---c~~l~~i~~---~~~~~~~l~~L~~L~l~~C~~-l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~ 508 (623)
++|++++ |..+++.+. .+.....+++|++|++++|.. ++...
T Consensus 406 ~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~------------------------------- 454 (592)
T 3ogk_B 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG------------------------------- 454 (592)
T ss_dssp CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH-------------------------------
T ss_pred cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH-------------------------------
Confidence 6666653 223332100 001123356666666655543 11110
Q ss_pred CCCC-CCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecc
Q 036269 509 SSPT-PSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLC 587 (623)
Q Consensus 509 ~~~~-~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 587 (623)
+..+ ..+++|+.|++++|. +++......+.++++|++|+|++|+ +++.... . ....+++|++|+++
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-----~------~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA-----A------AVTKLPSLRYLWVQ 521 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH-----H------HHHHCSSCCEEEEE
T ss_pred HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH-----H------HHHhcCccCeeECc
Confidence 0011 247889999999865 6553333446788999999999999 5432110 0 23468999999999
Q ss_pred cCcccceecCCCCcceeecCCccEEEec
Q 036269 588 LLDSLTCFCSSGSHATVEFLALEALQII 615 (623)
Q Consensus 588 ~c~~l~~~~~~~~~~~~~~~~L~~L~i~ 615 (623)
+|+ ++..+. ... ...+|.+....+.
T Consensus 522 ~n~-it~~~~-~~l-~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 522 GYR-ASMTGQ-DLM-QMARPYWNIELIP 546 (592)
T ss_dssp SCB-CCTTCT-TGG-GGCCTTEEEEEEC
T ss_pred CCc-CCHHHH-HHH-HHhCCCcEEEEec
Confidence 997 665533 223 2345666555444
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.7e-21 Score=194.04 Aligned_cols=190 Identities=22% Similarity=0.278 Sum_probs=108.9
Q ss_pred CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269 37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116 (623)
Q Consensus 37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~ 116 (623)
+++.++++++.++.+|.... +.++.|++++|.+..++...|.++++|++|++++|.+. +..|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC--eeCHHHhcCCCCCCEEECC
Confidence 56667777766666665442 56677777777776666555567777777777777763 3335666677777777777
Q ss_pred CCcCCCCc-ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCC-cCchhhhhccccCcEEEeccccccc
Q 036269 117 DCQHFGDL-SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCHW 193 (623)
Q Consensus 117 ~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~ 193 (623)
+|. ++.+ ..+. ++|++|++++|.++.++ ..+.++++|++|++++|.... ......+.++++|+.|++++|.+.
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 766 6554 2221 56777777776666554 345666677777766643211 122223566666666666666552
Q ss_pred ccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeC
Q 036269 194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIG 246 (623)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~ 246 (623)
.++..+. ++|+.|++++|.+..++.. ..+++|+.|+++++
T Consensus 185 -----------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 185 -----------TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp -----------SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred -----------cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 2222221 4566666666655444222 34444444444433
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2e-21 Score=193.39 Aligned_cols=168 Identities=18% Similarity=0.256 Sum_probs=135.4
Q ss_pred CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcE
Q 036269 59 RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEI 135 (623)
Q Consensus 59 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~ 135 (623)
+++.++++++.+..+|..+ .+.+++|++++|.+ ..++. .+.++++|++|++++|. +..+ ..++.+++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcC---CEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCE
Confidence 6899999999999888754 47899999999999 55554 78999999999999998 8766 57899999999
Q ss_pred EEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCC
Q 036269 136 LDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSR 215 (623)
Q Consensus 136 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 215 (623)
|++++|.++.+|..+. ++|++|++++ +.+..++...+.++++|++|++++|.+.. ....+..++.+++
T Consensus 105 L~Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~ 172 (330)
T 1xku_A 105 LYLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKK 172 (330)
T ss_dssp EECCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTT
T ss_pred EECCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCC
Confidence 9999999999987665 7999999999 56677777668999999999999987731 1234556788999
Q ss_pred ccEEEeecCCCccCCCcccccCccEEEEEeC
Q 036269 216 LTSLHIDIPEGEIMPSDMSFQNLTSFSITIG 246 (623)
Q Consensus 216 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 246 (623)
|+.|++++|.+..+|... .++|+.|+++++
T Consensus 173 L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n 202 (330)
T 1xku_A 173 LSYIRIADTNITTIPQGL-PPSLTELHLDGN 202 (330)
T ss_dssp CCEEECCSSCCCSCCSSC-CTTCSEEECTTS
T ss_pred cCEEECCCCccccCCccc-cccCCEEECCCC
Confidence 999999998877666542 145555555443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=9.6e-22 Score=195.87 Aligned_cols=191 Identities=18% Similarity=0.229 Sum_probs=150.0
Q ss_pred CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269 36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l 115 (623)
.+++.++++++.++.+|... .++++.|++++|.+..+++..|.++++|++|++++|.+. ...|..+..+++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS--KIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC--ccCHhHhhCcCCCCEEEC
Confidence 36899999999999998766 368999999999999776666799999999999999994 445778999999999999
Q ss_pred cCCcCCCCc-ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCC-cCchhhhhccccCcEEEecccccc
Q 036269 116 HDCQHFGDL-SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 116 ~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~ 192 (623)
++|. +..+ ..+. ++|++|++++|.++.+|. .+.++++|++|++++|.... ......+..+ +|+.|++++|.+.
T Consensus 110 ~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 9998 8777 3333 899999999999998875 58899999999999954321 1333336667 9999999999873
Q ss_pred cccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269 193 WQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG 247 (623)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~ 247 (623)
.++..+. ++|+.|++++|.+..++.. ..+++|+.|+++++.
T Consensus 186 ------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 186 ------------GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp ------------SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred ------------ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 3343333 6899999999987766533 556666666665544
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=199.78 Aligned_cols=198 Identities=19% Similarity=0.180 Sum_probs=155.0
Q ss_pred CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269 36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l 115 (623)
+.....+.+++.++.+|.... ++|++|++++|.+..++...|.++++|++|++++|.+. +..|..+.++++|++|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN--TIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC--ccCHhhcCCCCCCCEEEC
Confidence 444557888888888887653 58999999999988777766789999999999999884 334566888999999999
Q ss_pred cCCcCCCCc--ccccCCcCCcEEEcCCCCCccccc--cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 116 HDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 116 ~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
++|. +..+ ..++++++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|++|++++|.+
T Consensus 108 s~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 9998 8776 347889999999999999988876 6888999999999987667777665588889999999988877
Q ss_pred ccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCC
Q 036269 192 HWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGP 248 (623)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~ 248 (623)
. ...+..++.+++|+.|++++|.+..++.. ..+++|+.|+++++..
T Consensus 187 ~-----------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 187 Q-----------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp C-----------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred C-----------ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 3 34466778888888888888876555543 3456677776666543
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.1e-21 Score=193.14 Aligned_cols=252 Identities=17% Similarity=0.195 Sum_probs=198.6
Q ss_pred CCCCCCC-----CCCcEEEcccCCcc---cccccC-CCCCcceEEccC-CCCC-CCChhhHhCCCcccEEEccCCccccc
Q 036269 29 WPSINTF-----EDLTGISLMFNDIH---EVHEGL-QCPRLQALFLQK-NDLL-DIPDPFFQGMKDLKVLDLGGSGVFSL 97 (623)
Q Consensus 29 ~~~~~~~-----~~l~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~ 97 (623)
|.++..- .++++|+++++.++ .+|..+ .+++|++|++++ |.+. .+|.. |.++++|++|++++|.+.
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~-- 114 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVS-- 114 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCE--
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeC--
Confidence 7766432 68999999999987 477766 899999999995 8877 66665 599999999999999995
Q ss_pred CCCchhhhccccCcEEeccCCcCCC-Cc-ccccCCcCCcEEEcCCCCCc-cccccccCCC-ccCEEeccCCCCCCcCchh
Q 036269 98 FSLPSSLSFLINLRTLSLHDCQHFG-DL-SLIGELSLLEILDLSESDVS-EIPVSFGRLG-HLRLLDLTDCYNLELIPRG 173 (623)
Q Consensus 98 ~~lp~~~~~l~~L~~L~l~~~~~l~-~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~l~~~~~~~~l~~~ 173 (623)
+.+|..+..+++|++|++++|. +. .+ ..++.+++|++|++++|.++ .+|..+++++ +|++|++++|...+.+|..
T Consensus 115 ~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 115 GAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp EECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred CcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 5889999999999999999998 75 44 67899999999999999998 8899999998 9999999996555567765
Q ss_pred hhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCC
Q 036269 174 VLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVP 252 (623)
Q Consensus 174 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~ 252 (623)
+..+. |+.|++++|.+. ...+..++.+++|+.|++++|.+...+.. ..+++|++|+++++....
T Consensus 194 -~~~l~-L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-- 258 (313)
T 1ogq_A 194 -FANLN-LAFVDLSRNMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-- 258 (313)
T ss_dssp -GGGCC-CSEEECCSSEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE--
T ss_pred -HhCCc-ccEEECcCCccc-----------CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC--
Confidence 77887 999999999883 45567788999999999999986544333 667788888887665321
Q ss_pred cchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCce
Q 036269 253 LSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK 332 (623)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 332 (623)
.+|.++..+ ++|++|++++|..... ++.. ..+++|+.+++.+++.+.
T Consensus 259 -----------------------------~~p~~l~~l-~~L~~L~Ls~N~l~~~-ip~~--~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 259 -----------------------------TLPQGLTQL-KFLHSLNVSFNNLCGE-IPQG--GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -----------------------------CCCGGGGGC-TTCCEEECCSSEEEEE-CCCS--TTGGGSCGGGTCSSSEEE
T ss_pred -----------------------------cCChHHhcC-cCCCEEECcCCccccc-CCCC--ccccccChHHhcCCCCcc
Confidence 233333333 7888999988864333 3443 568888888888886443
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=6e-21 Score=189.09 Aligned_cols=196 Identities=21% Similarity=0.294 Sum_probs=168.6
Q ss_pred CCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269 35 FEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL 113 (623)
Q Consensus 35 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L 113 (623)
..+++.|+++++.++.+|..+ .+++|++|++++|.+..+|..+ .++++|++|++++|.+ ..+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l---~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPL---RALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCC---CCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCcc---ccCcHHHhcCcCCCEE
Confidence 378999999999999999877 8999999999999999888764 8999999999999999 7889999999999999
Q ss_pred eccCCcCCCCc-ccc---------cCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcE
Q 036269 114 SLHDCQHFGDL-SLI---------GELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEE 183 (623)
Q Consensus 114 ~l~~~~~l~~i-~~~---------~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~ 183 (623)
++++|...+.+ ..+ .++++|++|++++|.++.+|..++++++|++|++++ +.+..+|.. +..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCE
Confidence 99998744555 333 459999999999999999999999999999999999 456678876 899999999
Q ss_pred EEecccccccccccccccccccccccccCCCCccEEEeecCC-CccCCCc-ccccCccEEEEEeCC
Q 036269 184 LYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE-GEIMPSD-MSFQNLTSFSITIGG 247 (623)
Q Consensus 184 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~~~~L~~L~l~~~~ 247 (623)
|++++|.+. ...+..++.+++|+.|++++|. ...+|.. ..+++|+.|++++|.
T Consensus 234 L~Ls~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 234 LDLRGCTAL-----------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp EECTTCTTC-----------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred EECcCCcch-----------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 999998773 4567788999999999999976 4566655 778888888887655
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=6.5e-21 Score=185.51 Aligned_cols=209 Identities=24% Similarity=0.360 Sum_probs=163.1
Q ss_pred cCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCc-ccccC
Q 036269 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG-VFSLF 98 (623)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~-~~~~~ 98 (623)
.+..+..+| ....+++++|++++|.++.++.. + .+++|++|++++|.+..+++..|.++++|++|++++|. + .
T Consensus 19 ~~~~l~~ip-~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l---~ 94 (285)
T 1ozn_A 19 PQQGLQAVP-VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL---R 94 (285)
T ss_dssp CSSCCSSCC-TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC---C
T ss_pred CcCCcccCC-cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc---c
Confidence 345567776 34567899999999988888753 3 78889999999998886655557888999999999886 6 4
Q ss_pred CC-chhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhh
Q 036269 99 SL-PSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGV 174 (623)
Q Consensus 99 ~l-p~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~ 174 (623)
.+ |..+..+++|++|++++|. +..+ ..+.++++|++|++++|.++.+|. .++++++|++|++++ +.++.++...
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~ 172 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERA 172 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHH
Confidence 44 5678888999999999988 7665 457888899999999998887764 478889999999988 4666777666
Q ss_pred hhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269 175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG 247 (623)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~ 247 (623)
+..+++|++|++++|.+. ...+..++.+++|+.|++++|.+..++.. ..+++|+.+++++++
T Consensus 173 ~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hcCccccCEEECCCCccc-----------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 788889999999888773 34466778888899999988887776654 667778888777664
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.2e-20 Score=186.93 Aligned_cols=211 Identities=21% Similarity=0.273 Sum_probs=183.7
Q ss_pred eeecCCCCCCCCC-CCCCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccc
Q 036269 19 LIKAGVELKDWPS-INTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFS 96 (623)
Q Consensus 19 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~ 96 (623)
....++.+..+|. +..+++|++|++++|.++.+|..+ .+++|++|++++|.+..+|.. +.++++|++|++++|.+.
T Consensus 86 L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~- 163 (328)
T 4fcg_A 86 LELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPEL- 163 (328)
T ss_dssp EEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTC-
T ss_pred EEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCc-
Confidence 3444566777774 567899999999999999999877 899999999999999988876 599999999999998765
Q ss_pred cCCCchhhhc---------cccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCC
Q 036269 97 LFSLPSSLSF---------LINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYN 166 (623)
Q Consensus 97 ~~~lp~~~~~---------l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~ 166 (623)
+.+|..+.. +++|++|++++|. ++.+ ..++++++|++|++++|.++.+|..++++++|++|++++|+.
T Consensus 164 -~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 164 -TELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp -CCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTT
T ss_pred -cccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcc
Confidence 788877654 9999999999998 8777 679999999999999999999999999999999999999988
Q ss_pred CCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCC-CccCCCc-ccccCccEEEEE
Q 036269 167 LELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE-GEIMPSD-MSFQNLTSFSIT 244 (623)
Q Consensus 167 ~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~~~~L~~L~l~ 244 (623)
.+.+|.. +..+++|+.|++++|.+. ...+..++.+++|+.|++++|. .+.+|.. ..+++|+.+.+.
T Consensus 242 ~~~~p~~-~~~l~~L~~L~L~~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 242 LRNYPPI-FGGRAPLKRLILKDCSNL-----------LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCBCCCC-TTCCCCCCEEECTTCTTC-----------CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred hhhhHHH-hcCCCCCCEEECCCCCch-----------hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 8888876 899999999999998773 5667788999999999999987 5777777 788888888765
Q ss_pred e
Q 036269 245 I 245 (623)
Q Consensus 245 ~ 245 (623)
.
T Consensus 310 ~ 310 (328)
T 4fcg_A 310 P 310 (328)
T ss_dssp G
T ss_pred H
Confidence 3
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=3.3e-22 Score=216.32 Aligned_cols=409 Identities=14% Similarity=0.083 Sum_probs=235.9
Q ss_pred CCCCCCcEEEcccCC-ccccc---------------ccC-CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCC-c
Q 036269 33 NTFEDLTGISLMFND-IHEVH---------------EGL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGS-G 93 (623)
Q Consensus 33 ~~~~~l~~L~l~~~~-~~~l~---------------~~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~-~ 93 (623)
..+++++.++++++. +..+. ... .+++|+.|++++|.+. ..+..+...+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 345789999999875 22221 112 5789999999999877 333333337999999999999 5
Q ss_pred ccccCCCchhhhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCC--Cc--cccccccCCCccCEEeccC
Q 036269 94 VFSLFSLPSSLSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESD--VS--EIPVSFGRLGHLRLLDLTD 163 (623)
Q Consensus 94 ~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~L~l~~ 163 (623)
+.. ..++..+.++++|++|++++|. +++. .....+++|++|++++|. +. .++..+.++++|++|++++
T Consensus 143 ~~~-~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 143 FST-DGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEH-HHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCH-HHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 531 1255556689999999999998 6442 223477899999999986 32 3334445689999999999
Q ss_pred CCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEE-EeecCCCccCCCc-ccccCccEE
Q 036269 164 CYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSL-HIDIPEGEIMPSD-MSFQNLTSF 241 (623)
Q Consensus 164 ~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~-~~~~~L~~L 241 (623)
|...+.++.. +.++++|++|++..+..... .......+..++++++|+.+ .+.......++.. ..+++|++|
T Consensus 221 ~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~-----~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 221 AVPLEKLATL-LQRAPQLEELGTGGYTAEVR-----PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294 (594)
T ss_dssp TSCHHHHHHH-HHHCTTCSEEECSBCCCCCC-----HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEE
T ss_pred CCcHHHHHHH-HhcCCcceEcccccccCccc-----hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEE
Confidence 8677776654 88999999999765531000 00012334467788888888 3433333334433 467888888
Q ss_pred EEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecc--------cCCccccccccc
Q 036269 242 SITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGD--------VNDLENIVSDLA 313 (623)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~~~~~~~~~~ 313 (623)
+++++... ...+..+ ....+.++.+.+..+. .......+...+++|++|++.+ +..+++......
T Consensus 295 ~L~~~~l~---~~~l~~~---~~~~~~L~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 295 NLSYATVQ---SYDLVKL---LCQCPKLQRLWVLDYI-EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp ECTTCCCC---HHHHHHH---HTTCTTCCEEEEEGGG-HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred EccCCCCC---HHHHHHH---HhcCCCcCEEeCcCcc-CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 88776521 1111111 1144667777776541 1111222233346788887743 233332111111
Q ss_pred ccCccCccEEEEecccCceeecccccccccccccccceeecc-----cCcccccccc-cccC--CCcCCCccEEEEeecC
Q 036269 314 HDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIV-----DNRNFVEICH-GQLP--AGCLSNVKRLDVRDCG 385 (623)
Q Consensus 314 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~l~~~~~-~~~~--~~~~~~L~~L~l~~c~ 385 (623)
...+++|+.|.+..+ .++...... ....+++|+.|++. +|..++.... ..++ ...+++|+.|++++
T Consensus 368 ~~~~~~L~~L~~~~~-~l~~~~~~~---l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-- 441 (594)
T 2p1m_B 368 SMGCPKLESVLYFCR-QMTNAALIT---IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-- 441 (594)
T ss_dssp HHHCTTCCEEEEEES-CCCHHHHHH---HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--
T ss_pred HHhchhHHHHHHhcC-CcCHHHHHH---HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--
Confidence 123677777755443 443221110 22346777777777 3444432100 0000 12467777777754
Q ss_pred CcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEE
Q 036269 386 SVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKI 465 (623)
Q Consensus 386 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L 465 (623)
.+++..+......+++|+.|++++|. +++. +. ......+++|++|++++|+. ++. ........+++|++|
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~----~~---~~l~~~~~~L~~L~L~~n~~-~~~-~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL----GM---HHVLSGCDSLRKLEIRDCPF-GDK-ALLANASKLETMRSL 511 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH----HH---HHHHHHCTTCCEEEEESCSC-CHH-HHHHTGGGGGGSSEE
T ss_pred cccHHHHHHHHHhchhccEeeccCCC-CcHH----HH---HHHHhcCCCcCEEECcCCCC-cHH-HHHHHHHhCCCCCEE
Confidence 45543343333347778888887743 4322 11 11114477788888877754 321 001122446777788
Q ss_pred EEEcCCC
Q 036269 466 RVVFCDE 472 (623)
Q Consensus 466 ~l~~C~~ 472 (623)
++++|+.
T Consensus 512 ~l~~~~~ 518 (594)
T 2p1m_B 512 WMSSCSV 518 (594)
T ss_dssp EEESSCC
T ss_pred eeeCCCC
Confidence 8877754
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=3.9e-23 Score=216.29 Aligned_cols=166 Identities=16% Similarity=0.065 Sum_probs=88.6
Q ss_pred hhceeEeecccCCcccccccc---cccCccCccEEEEecccCceeecccccccccccccccceeecccCccccccccccc
Q 036269 292 LRSEILALGDVNDLENIVSDL---AHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQL 368 (623)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 368 (623)
++|++|++++|.........+ ....+++|++|++++| .++.............+++|++|+++++. +.+.....+
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l 304 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLL 304 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHH
Confidence 667777776664322111111 0124677888888877 44432110000033446778888888775 332111111
Q ss_pred C---CCcCCCccEEEEeecCCcccc----cchhHHHhccccceEEEeccccceeeeeccceeccccccc-cccCccEEec
Q 036269 369 P---AGCLSNVKRLDVRDCGSVLKI----LPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETE-LFSSLEKLTL 440 (623)
Q Consensus 369 ~---~~~~~~L~~L~l~~c~~l~~~----~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~-~~~~L~~L~l 440 (623)
. ....++|+.|++++|. +++. ++. .+..+++|++|++++ +.+++.. ...+...+. ..++|++|++
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~-~l~~~~~L~~L~Ls~-n~i~~~~----~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCS-FTAACCSHFSS-VLAQNRFLLELQISN-NRLEDAG----VRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSC-CBGGGHHHHHH-HHHHCSSCCEEECCS-SBCHHHH----HHHHHHHHTSTTCCCCEEEC
T ss_pred HHHhccCCccceeeEcCCCC-CchHHHHHHHH-HHhhCCCccEEEccC-Ccccccc----HHHHHHHHcCCCCceEEEEC
Confidence 1 1123688888888864 4432 222 356778888888888 4555431 100011111 1568888888
Q ss_pred CCccchh-----hcccCCCcccccCCccEEEEEcC
Q 036269 441 IGLPRMT-----DIWKGDTQFVSLHDLKKIRVVFC 470 (623)
Q Consensus 441 ~~c~~l~-----~i~~~~~~~~~l~~L~~L~l~~C 470 (623)
++| .++ .+ +..+..+++|++|++++|
T Consensus 378 ~~n-~i~~~~~~~l---~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 378 ADC-DVSDSSCSSL---AATLLANHSLRELDLSNN 408 (461)
T ss_dssp TTS-CCCHHHHHHH---HHHHHHCCCCCEEECCSS
T ss_pred CCC-CCChhhHHHH---HHHHHhCCCccEEECCCC
Confidence 888 454 22 333455788888888885
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.4e-20 Score=183.51 Aligned_cols=196 Identities=22% Similarity=0.206 Sum_probs=141.0
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC 118 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~ 118 (623)
+.++.+++.++.+|.... +++++|++++|.+..++..+|.++++|++|++++|.+...+..|..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 457777777777776543 5788888888888888877778888888888888887321223566777888888888888
Q ss_pred cCCCCc-ccccCCcCCcEEEcCCCCCccccc--cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccc
Q 036269 119 QHFGDL-SLIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQF 195 (623)
Q Consensus 119 ~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 195 (623)
. +..+ ..+..+++|++|++++|.++.++. .+..+++|++|++++|. +...+...+..+++|++|++++|.+..
T Consensus 89 ~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 164 (306)
T 2z66_A 89 G-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE-- 164 (306)
T ss_dssp S-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG--
T ss_pred c-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc--
Confidence 7 7666 557788888888888888886653 67788888888888854 444444447788888888888887621
Q ss_pred ccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269 196 ENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG 247 (623)
Q Consensus 196 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~ 247 (623)
...+..++.+++|+.|++++|.+..++.. ..+++|+.|+++++.
T Consensus 165 --------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 165 --------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp --------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred --------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 13556677888888888888876655332 455566666555443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=187.29 Aligned_cols=258 Identities=19% Similarity=0.215 Sum_probs=187.4
Q ss_pred CCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC
Q 036269 23 GVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL 100 (623)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l 100 (623)
++.+..+|. ...+++++|++++|.++.++. .+ .+++|++|++++|.+..+++..|.++++|++|++++|.+ ..+
T Consensus 40 ~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~ 115 (353)
T 2z80_A 40 SGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL---SNL 115 (353)
T ss_dssp STTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---SSC
T ss_pred CCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC---CcC
Confidence 456777774 455799999999999999887 33 899999999999999977666679999999999999999 667
Q ss_pred chh-hhccccCcEEeccCCcCCCCcc---cccCCcCCcEEEcCCC-CCccc-cccccCCCccCEEeccCCCCCCcCchhh
Q 036269 101 PSS-LSFLINLRTLSLHDCQHFGDLS---LIGELSLLEILDLSES-DVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGV 174 (623)
Q Consensus 101 p~~-~~~l~~L~~L~l~~~~~l~~i~---~~~~l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~ 174 (623)
|.. +..+++|++|++++|. +..++ .+.++++|++|++++| .+..+ |..++++++|++|++++|. +...+...
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 193 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS 193 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT
T ss_pred CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH
Confidence 765 8899999999999998 87773 5889999999999999 47766 4678999999999999954 45553334
Q ss_pred hhccccCcEEEecccccccccccccccccccccc-cccCCCCccEEEeecCCCccCCCc-----ccccCccEEEEEeCCC
Q 036269 175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFI-ELGALSRLTSLHIDIPEGEIMPSD-----MSFQNLTSFSITIGGP 248 (623)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~~L~l~~~~~ 248 (623)
+..+++|++|++++|.+. ..+. .++.+++|+.|++++|.+..++.. .....++.+++..+..
T Consensus 194 l~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQHI------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp TTTCSEEEEEEEECSCST------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred HhccccCCeecCCCCccc------------cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 899999999999999872 2222 244588999999999987665432 2344455555543321
Q ss_pred CCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecc
Q 036269 249 EEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGC 328 (623)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 328 (623)
.+. .+..+|.++... ++|+.|++++|.. +.+... .+..+++|++|++++|
T Consensus 262 --------------------------~~~-~l~~l~~~l~~l-~~L~~L~Ls~N~l-~~i~~~-~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 262 --------------------------TDE-SLFQVMKLLNQI-SGLLELEFSRNQL-KSVPDG-IFDRLTSLQKIWLHTN 311 (353)
T ss_dssp --------------------------CHH-HHHHHHHHHHTC-TTCCEEECCSSCC-CCCCTT-TTTTCTTCCEEECCSS
T ss_pred --------------------------cCc-chhhhHHHHhcc-cCCCEEECCCCCC-CccCHH-HHhcCCCCCEEEeeCC
Confidence 111 111344444433 6677777766643 222221 1244566666666666
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=5e-21 Score=188.52 Aligned_cols=173 Identities=18% Similarity=0.218 Sum_probs=143.6
Q ss_pred CCcceEEccCCCCC---CCChhhHhCCCcccEEEccC-CcccccCCCchhhhccccCcEEeccCCcCCC-Cc-ccccCCc
Q 036269 58 PRLQALFLQKNDLL---DIPDPFFQGMKDLKVLDLGG-SGVFSLFSLPSSLSFLINLRTLSLHDCQHFG-DL-SLIGELS 131 (623)
Q Consensus 58 ~~L~~L~l~~~~~~---~l~~~~~~~l~~Lr~L~l~~-~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~-~i-~~~~~l~ 131 (623)
.+++.|++++|.+. .+|.. |.++++|++|++++ |.+. +.+|..+.++++|++|++++|. +. .+ ..+.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLV--GPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEE--SCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCccc--ccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCC
Confidence 57999999999998 46665 59999999999995 8886 6899999999999999999998 75 44 6789999
Q ss_pred CCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccc-cCcEEEeccccccccccccccccccccccc
Q 036269 132 LLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR-KLEELYMSKTFCHWQFENEDDSRSNAKFIE 209 (623)
Q Consensus 132 ~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (623)
+|++|++++|.++ .+|..+.++++|++|++++|...+.+|.. +..++ +|++|++++|.+. ...+..
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~-----------~~~~~~ 193 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT-----------GKIPPT 193 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE-----------EECCGG
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee-----------ccCChH
Confidence 9999999999998 78999999999999999996555578876 78887 9999999999883 355667
Q ss_pred ccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269 210 LGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG 247 (623)
Q Consensus 210 l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~ 247 (623)
++.++ |+.|++++|.+...... ..+++|+.|+++++.
T Consensus 194 ~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 77776 99999999886544332 566777777776553
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=2.1e-22 Score=210.66 Aligned_cols=355 Identities=18% Similarity=0.130 Sum_probs=200.4
Q ss_pred CCCcEEEcccCCccccccc--C-CCCCcceEEccCCCCC-----CCChhhHhCCCcccEEEccCCcccccCCCchhh-hc
Q 036269 36 EDLTGISLMFNDIHEVHEG--L-QCPRLQALFLQKNDLL-----DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SF 106 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~-----~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~-~~ 106 (623)
+++++|+++++.++..+.. + .+++|++|++++|.+. .++ ..+..+++|++|++++|.+. +..+..+ ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELG--DVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCH--HHHHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCC--hHHHHHHHHH
Confidence 6788999998888644322 3 6788999999999876 223 33578899999999998884 3333333 33
Q ss_pred cc----cCcEEeccCCcCCCC-----c-ccccCCcCCcEEEcCCCCCccc-cc----c-ccCCCccCEEeccCCCCCCc-
Q 036269 107 LI----NLRTLSLHDCQHFGD-----L-SLIGELSLLEILDLSESDVSEI-PV----S-FGRLGHLRLLDLTDCYNLEL- 169 (623)
Q Consensus 107 l~----~L~~L~l~~~~~l~~-----i-~~~~~l~~L~~L~l~~~~i~~l-p~----~-i~~l~~L~~L~l~~~~~~~~- 169 (623)
++ +|++|++++|. +++ + ..+..+++|++|++++|.++.. +. . ....++|++|++++|.....
T Consensus 80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 55 69999999988 753 2 5678888999999999987622 22 2 22356799999988643321
Q ss_pred ---CchhhhhccccCcEEEeccccccccccccccccccccccccc-----CCCCccEEEeecCCCccC-----CCc-ccc
Q 036269 170 ---IPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELG-----ALSRLTSLHIDIPEGEIM-----PSD-MSF 235 (623)
Q Consensus 170 ---l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~-~~~ 235 (623)
++. .+..+++|++|++++|.+. +..+..+. ..++|+.|++++|.+... +.. ..+
T Consensus 159 ~~~l~~-~l~~~~~L~~L~L~~n~i~-----------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 159 CEPLAS-VLRAKPDFKELTVSNNDIN-----------EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226 (461)
T ss_dssp HHHHHH-HHHHCTTCCEEECCSSBCH-----------HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred HHHHHH-HHhhCCCCCEEECcCCCcc-----------hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence 232 3567789999999888763 22222222 356889999988876542 222 456
Q ss_pred cCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCccc----cccc
Q 036269 236 QNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLEN----IVSD 311 (623)
Q Consensus 236 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~ 311 (623)
++|++|+++++..... ... .+...+....++|++|++++|..... +...
T Consensus 227 ~~L~~L~Ls~n~l~~~---~~~------------------------~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 227 ASLRELALGSNKLGDV---GMA------------------------ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp TTCCEEECCSSBCHHH---HHH------------------------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChH---HHH------------------------HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 7888888776642110 000 01111111124566666666542221 1111
Q ss_pred ccccCccCccEEEEecccCceeeccccccc-ccccccccceeecccCcccccccccccC--CCcCCCccEEEEeecCCcc
Q 036269 312 LAHDGFNELMFLAIVGCNEMKYLLNSLERT-LRVTLLKLEWLMIVDNRNFVEICHGQLP--AGCLSNVKRLDVRDCGSVL 388 (623)
Q Consensus 312 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~ 388 (623)
+ ..+++|++|++++| .+.......... .....++|+.|++++|. ++......++ ...+++|+.|++++| .++
T Consensus 280 l--~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~ 354 (461)
T 1z7x_W 280 L--RAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLE 354 (461)
T ss_dssp H--HHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCH
T ss_pred H--hhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccc
Confidence 1 23566666666666 332211100000 01112466677776665 2221111111 124567777777764 444
Q ss_pred cccchhHHHh----ccccceEEEeccccceeeeeccceeccccccccccCccEEecCCc
Q 036269 389 KILPSHLVQS----FQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGL 443 (623)
Q Consensus 389 ~~~~~~~~~~----l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 443 (623)
+..+...... .++|++|++++| .+++. |+..++..+..+++|++|++++|
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~----~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADC-DVSDS----SCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTS-CCCHH----HHHHHHHHHHHCCCCCEEECCSS
T ss_pred cccHHHHHHHHcCCCCceEEEECCCC-CCChh----hHHHHHHHHHhCCCccEEECCCC
Confidence 4323221111 457777777773 44421 11111444555677777777777
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=6.7e-20 Score=189.94 Aligned_cols=193 Identities=22% Similarity=0.291 Sum_probs=154.6
Q ss_pred CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269 37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116 (623)
Q Consensus 37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~ 116 (623)
..+.++.++..++.+|..+. ++++.|++++|.+..++...|.++++|++|++++|.+. ...+..+..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR--TIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC--EECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC--ccChhhccCCccCCEEECC
Confidence 45678888888888887664 67899999999998777666799999999999999984 3344678889999999999
Q ss_pred CCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269 117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW 193 (623)
Q Consensus 117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 193 (623)
+|. ++.+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...+.++++|+.|++++|.+.
T Consensus 121 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 121 DNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 998 8777 468899999999999999987764 68899999999999988888888777889999999999998772
Q ss_pred ccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeC
Q 036269 194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIG 246 (623)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~ 246 (623)
.+ ..+..+++|+.|++++|.+..++.. ..+++|+.|+++++
T Consensus 199 -----------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 199 -----------EI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp -----------SC-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred -----------cc-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 22 3477888899999998887666433 55566666655544
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=6.2e-20 Score=190.88 Aligned_cols=193 Identities=23% Similarity=0.267 Sum_probs=152.8
Q ss_pred CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269 37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116 (623)
Q Consensus 37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~ 116 (623)
..+.++.++..++.+|..+. ++++.|++++|.+..++...|.++++|++|++++|.+. ...+..+..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--CcChhhccCcccCCEEECC
Confidence 45678888888888887653 68999999999998776666799999999999999984 3444678889999999999
Q ss_pred CCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269 117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW 193 (623)
Q Consensus 117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 193 (623)
+|. +..+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|+.|++++|.+.
T Consensus 132 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 209 (452)
T 3zyi_A 132 DNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209 (452)
T ss_dssp SSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-
Confidence 998 8776 458889999999999999987764 68889999999999988888888777889999999999998772
Q ss_pred ccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeC
Q 036269 194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIG 246 (623)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~ 246 (623)
. ...+..+++|+.|++++|.+..++.. ..+++|+.|+++++
T Consensus 210 -----------~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 210 -----------D-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp -----------S-CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred -----------c-cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 2 23577888899999988887655433 44555555555443
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=3.5e-19 Score=189.89 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=81.2
Q ss_pred CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269 37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116 (623)
Q Consensus 37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~ 116 (623)
.++.|+++++.++.+|..+. ++|+.|++++|.+..+|. .+++|++|++++|.+ ..+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l---~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQL---TSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCC---SCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcC---CcCCC---CCCCCCEEECc
Confidence 46667777777766665543 567777777776666654 456677777777766 45555 45667777776
Q ss_pred CCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 117 DCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 117 ~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
+|. +..++. .+++|++|++++|.++.+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.+
T Consensus 110 ~N~-l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 110 SNP-LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQL 173 (622)
T ss_dssp SCC-CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCC
T ss_pred CCc-CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCC
Confidence 666 555533 456666666666666666643 356666666663 4444443 124555666665554
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=5.6e-20 Score=178.85 Aligned_cols=196 Identities=19% Similarity=0.245 Sum_probs=160.2
Q ss_pred CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269 38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117 (623)
Q Consensus 38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~ 117 (623)
-+.++.+++.++.+|... .++++.|++++|.+..++...|.++++|++|++++|.+. +..|..+..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--eeCHhhcCCccCCCEEeCCC
Confidence 367888888899888654 468999999999999887777899999999999999984 34467889999999999999
Q ss_pred CcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269 118 CQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ 194 (623)
Q Consensus 118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~ 194 (623)
|..++.+ ..+..+++|++|++++|.++.+ |..+.++++|++|++++ +.++.++...+..+++|++|++++|.+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 166 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRIS-- 166 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCccc--
Confidence 9646665 5788999999999999999966 56788999999999999 5667777766889999999999999873
Q ss_pred cccccccccccccccccCCCCccEEEeecCCCccCCC-c-ccccCccEEEEEeCCC
Q 036269 195 FENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPS-D-MSFQNLTSFSITIGGP 248 (623)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~ 248 (623)
......++.+++|+.|++++|.+..+.. . ..+++|+.|+++++..
T Consensus 167 ---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 167 ---------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ---------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ---------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 2223357889999999999998766633 3 5677777777776653
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=1.4e-19 Score=178.03 Aligned_cols=213 Identities=21% Similarity=0.231 Sum_probs=176.9
Q ss_pred cCCCCCCCCCCCCCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCC---ChhhHhCCCcccEEEccCCcccc
Q 036269 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDI---PDPFFQGMKDLKVLDLGGSGVFS 96 (623)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l---~~~~~~~l~~Lr~L~l~~~~~~~ 96 (623)
.+.++..+|. ...++++.|++++|.++.++... .+++|+.|++++|.+..+ +.. +..+++|++|++++|.+
T Consensus 15 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i-- 90 (306)
T 2z66_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGV-- 90 (306)
T ss_dssp CSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSE--
T ss_pred CCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcc--
Confidence 3456777774 45589999999999999998853 899999999999998744 344 47899999999999999
Q ss_pred cCCCchhhhccccCcEEeccCCcCCCCc---ccccCCcCCcEEEcCCCCCcc-ccccccCCCccCEEeccCCCCCC-cCc
Q 036269 97 LFSLPSSLSFLINLRTLSLHDCQHFGDL---SLIGELSLLEILDLSESDVSE-IPVSFGRLGHLRLLDLTDCYNLE-LIP 171 (623)
Q Consensus 97 ~~~lp~~~~~l~~L~~L~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~-~l~ 171 (623)
..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. .|..+..+++|++|++++|.... ..|
T Consensus 91 -~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 91 -ITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp -EEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred -ccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 6788888999999999999998 7655 468899999999999999984 45678899999999999965443 245
Q ss_pred hhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCC
Q 036269 172 RGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPE 249 (623)
Q Consensus 172 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~ 249 (623)
.. +..+++|++|++++|.+. ...+..++.+++|+.|++++|.+..++.. ..+++|+.|+++++...
T Consensus 169 ~~-~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 169 DI-FTELRNLTFLDLSQCQLE-----------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp SC-CTTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred hH-HhhCcCCCEEECCCCCcC-----------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 54 899999999999999873 34466788999999999999998887764 67899999999988765
Q ss_pred CCC
Q 036269 250 EVP 252 (623)
Q Consensus 250 ~~~ 252 (623)
...
T Consensus 237 ~~~ 239 (306)
T 2z66_A 237 TSK 239 (306)
T ss_dssp BCS
T ss_pred ccC
Confidence 443
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=1.2e-20 Score=186.45 Aligned_cols=262 Identities=14% Similarity=0.120 Sum_probs=191.5
Q ss_pred CCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269 37 DLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114 (623)
Q Consensus 37 ~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~ 114 (623)
+++..+++.+.+...+... .+++|+.|++++|.+..+++..|.++++|++|++++|.+ ...+. +..+++|++|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~-~~~l~~L~~L~ 86 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---YETLD-LESLSTLRTLD 86 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC---EEEEE-ETTCTTCCEEE
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC---Ccchh-hhhcCCCCEEE
Confidence 3555666666666554433 567899999999999988877789999999999999998 44444 88999999999
Q ss_pred ccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269 115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ 194 (623)
Q Consensus 115 l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~ 194 (623)
+++|. ++.+. ..++|++|++++|.++.++. ..+++|++|++++ +.+..++...+..+++|++|++++|.+.
T Consensus 87 Ls~n~-l~~l~---~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-- 157 (317)
T 3o53_A 87 LNNNY-VQELL---VGPSIETLHAANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEID-- 157 (317)
T ss_dssp CCSSE-EEEEE---ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCC--
T ss_pred CcCCc-ccccc---CCCCcCEEECCCCccCCcCc--cccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCC--
Confidence 99998 65543 44899999999999997764 3478999999999 5566666555888999999999999873
Q ss_pred cccccccccccccccc-cCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceee
Q 036269 195 FENEDDSRSNAKFIEL-GALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMG 273 (623)
Q Consensus 195 ~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 273 (623)
...+..+ +.+++|+.|++++|.+..++....+++|+.|+++++....
T Consensus 158 ---------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~----------------------- 205 (317)
T 3o53_A 158 ---------TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF----------------------- 205 (317)
T ss_dssp ---------EEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-----------------------
T ss_pred ---------cccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc-----------------------
Confidence 2334444 4688999999999998877666668888888888765332
Q ss_pred eccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCce-eeccccccccccccccccee
Q 036269 274 LSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK-YLLNSLERTLRVTLLKLEWL 352 (623)
Q Consensus 274 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~L~~L 352 (623)
+|..+.. +++|+.|++++|.. ..+...+ ..+++|+.|++++|+ +. ..... ....+++|+.+
T Consensus 206 ---------l~~~~~~-l~~L~~L~L~~N~l-~~l~~~~--~~l~~L~~L~l~~N~-~~~~~~~~----~~~~~~~L~~l 267 (317)
T 3o53_A 206 ---------MGPEFQS-AAGVTWISLRNNKL-VLIEKAL--RFSQNLEHFDLRGNG-FHCGTLRD----FFSKNQRVQTV 267 (317)
T ss_dssp ---------ECGGGGG-GTTCSEEECTTSCC-CEECTTC--CCCTTCCEEECTTCC-CBHHHHHH----HHHTCHHHHHH
T ss_pred ---------chhhhcc-cCcccEEECcCCcc-cchhhHh--hcCCCCCEEEccCCC-ccCcCHHH----HHhccccceEE
Confidence 2222222 27888888888753 3443333 567888899888884 33 11111 44557778888
Q ss_pred ecccCcccc
Q 036269 353 MIVDNRNFV 361 (623)
Q Consensus 353 ~l~~~~~l~ 361 (623)
++.++..++
T Consensus 268 ~l~~~~~l~ 276 (317)
T 3o53_A 268 AKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHH
T ss_pred ECCCchhcc
Confidence 887666543
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=6.2e-19 Score=182.68 Aligned_cols=212 Identities=24% Similarity=0.338 Sum_probs=177.9
Q ss_pred cCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS 99 (623)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~ 99 (623)
.+..+..+|. ...+.++.|++++|.++.++.. + .+++|+.|++++|.+..++...|.++++|++|++++|.+ ..
T Consensus 51 ~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l---~~ 126 (440)
T 3zyj_A 51 VRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL---TT 126 (440)
T ss_dssp CSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC---SS
T ss_pred CCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC---Ce
Confidence 3456777773 4558899999999999988753 3 899999999999999988877789999999999999999 56
Q ss_pred Cch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCC-CCccccc-cccCCCccCEEeccCCCCCCcCchhh
Q 036269 100 LPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSES-DVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGV 174 (623)
Q Consensus 100 lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~-~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~ 174 (623)
+|. .+..+++|++|++++|. +..+ ..+.++++|++|++++| .+..++. .+.++++|++|++++ +.++.+|.
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~-- 202 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN-- 202 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--
T ss_pred eCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--
Confidence 665 68899999999999999 8777 46889999999999984 5666664 688999999999999 56778885
Q ss_pred hhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCC
Q 036269 175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVP 252 (623)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~ 252 (623)
+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+..++.. ..+++|+.|+++++.....+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CTTCSSCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred cCCCcccCEEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 889999999999999873 34466788999999999999998777654 67889999999888755443
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=7.8e-19 Score=182.59 Aligned_cols=211 Identities=24% Similarity=0.326 Sum_probs=176.3
Q ss_pred CCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC
Q 036269 23 GVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL 100 (623)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l 100 (623)
+.++..+|. ...++++.|++++|.++.+++. + .+++|+.|++++|.+..++...|.++++|++|++++|.+ ..+
T Consensus 63 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~ 138 (452)
T 3zyi_A 63 RRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL---TVI 138 (452)
T ss_dssp SSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---SBC
T ss_pred CCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC---Ccc
Confidence 455677773 4557899999999999988554 3 899999999999999977766789999999999999999 566
Q ss_pred ch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCC-CCCccccc-cccCCCccCEEeccCCCCCCcCchhhh
Q 036269 101 PS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSE-SDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVL 175 (623)
Q Consensus 101 p~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~ 175 (623)
|. .+..+++|++|++++|. +..+ ..+.++++|++|++++ +.+..++. .+..+++|++|++++ +.+..+|. +
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~ 214 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--L 214 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--C
T ss_pred ChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--c
Confidence 64 48889999999999999 8777 4688999999999998 46667764 588999999999999 56677775 7
Q ss_pred hccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCC
Q 036269 176 SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVP 252 (623)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~ 252 (623)
..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+..++.. ..+++|+.|+++++.....+
T Consensus 215 ~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFP-----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp TTCTTCCEEECTTSCCS-----------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccccccEEECcCCcCc-----------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 89999999999999883 44567789999999999999998777554 67899999999988755443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=8.1e-19 Score=169.76 Aligned_cols=209 Identities=22% Similarity=0.253 Sum_probs=170.7
Q ss_pred cCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS 99 (623)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~ 99 (623)
.+..+..+|. ...+++++|++++|.++.++. .+ .+++|++|++++|.+..++...|.++++|++|++++|.+. ..
T Consensus 15 ~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~ 91 (276)
T 2z62_A 15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SL 91 (276)
T ss_dssp TTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--EE
T ss_pred cCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC--cc
Confidence 3445666664 334789999999999998876 33 8999999999999998777766799999999999999994 33
Q ss_pred CchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcc--ccccccCCCccCEEeccCCCCCCcCchhhh
Q 036269 100 LPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCYNLELIPRGVL 175 (623)
Q Consensus 100 lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~ 175 (623)
.+..+..+++|++|++++|. +..+ ..++.+++|++|++++|.++. +|..+.++++|++|++++ +.++.++...+
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~ 169 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDL 169 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGG
T ss_pred ChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHh
Confidence 44678899999999999998 8766 368899999999999999985 688999999999999999 45666665557
Q ss_pred hccccCc----EEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269 176 SRLRKLE----ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG 247 (623)
Q Consensus 176 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~ 247 (623)
..+.+|+ .|++++|.+. ..+.......+|+.|++++|.+..++.. ..+++|+.+++++++
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMN------------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCC------------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhhhccccceeeecCCCccc------------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 7777777 8999999873 3333344445899999999998888775 678899999998776
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=8.3e-19 Score=172.13 Aligned_cols=196 Identities=19% Similarity=0.261 Sum_probs=169.8
Q ss_pred CCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhcccc
Q 036269 30 PSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLIN 109 (623)
Q Consensus 30 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~ 109 (623)
.....++++++|+++++.++.++....+++|+.|++++|.+..++. +..+++|++|++++|.+ ..++ .+..+++
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l---~~~~-~~~~l~~ 108 (308)
T 1h6u_A 35 VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL---KNVS-AIAGLQS 108 (308)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC---SCCG-GGTTCTT
T ss_pred ecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC---CCch-hhcCCCC
Confidence 3345578999999999999998865589999999999999998887 69999999999999998 5665 5889999
Q ss_pred CcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccc
Q 036269 110 LRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT 189 (623)
Q Consensus 110 L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~ 189 (623)
|++|++++|. +..++.+..+++|++|++++|.++.++. ++.+++|++|++++| .+..++. +..+++|+.|++++|
T Consensus 109 L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 109 IKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCEEECCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCC
Confidence 9999999999 8888779999999999999999998875 889999999999994 6667776 789999999999999
Q ss_pred ccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCC
Q 036269 190 FCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPE 249 (623)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 249 (623)
.+. .. ..+..+++|+.|++++|.+..++....+++|+.|+++++...
T Consensus 184 ~l~------------~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 184 KIS------------DI-SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCC------------CC-GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred ccC------------cC-hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 873 22 237889999999999999888876678899999999988643
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=1.1e-18 Score=169.51 Aligned_cols=196 Identities=21% Similarity=0.210 Sum_probs=167.3
Q ss_pred CCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcE
Q 036269 33 NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT 112 (623)
Q Consensus 33 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~ 112 (623)
..+++++.++++++.++.+|..+. +.++.|++++|.+..++...|.++++|++|++++|.+ ..++.. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC---CEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc---CcccCC-CCCCcCCE
Confidence 445789999999999999987664 6899999999999977766689999999999999998 556554 78999999
Q ss_pred EeccCCcCCCCc-ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccc
Q 036269 113 LSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTF 190 (623)
Q Consensus 113 L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 190 (623)
|++++|. +..+ ..+..+++|++|++++|.++.+| ..+..+++|++|++++ +.++.+|.+++..+++|+.|++++|.
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCc
Confidence 9999998 8777 56788999999999999999887 5689999999999999 56778888778899999999999998
Q ss_pred ccccccccccccccccc-ccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCC
Q 036269 191 CHWQFENEDDSRSNAKF-IELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGG 247 (623)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~ 247 (623)
+. .++ ..+..+++|+.|++++|.+..+|.. ....+|+.+.+.+++
T Consensus 160 l~------------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LT------------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CS------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CC------------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 83 233 3457789999999999999988887 667789999988776
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=7.1e-20 Score=180.81 Aligned_cols=266 Identities=18% Similarity=0.172 Sum_probs=173.0
Q ss_pred cceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcC
Q 036269 60 LQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLS 139 (623)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~ 139 (623)
++..+++.+.+...+..++..+++|++|++++|.+. ...|..+..+++|++|++++|. +..+..+..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECc
Confidence 445556666666556666778889999999999884 3444678889999999999998 7666458888999999999
Q ss_pred CCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEE
Q 036269 140 ESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSL 219 (623)
Q Consensus 140 ~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 219 (623)
+|.++.+|. .++|++|++++ +.+..++. ..+++|++|++++|.+. ...+..++.+++|+.|
T Consensus 89 ~n~l~~l~~----~~~L~~L~l~~-n~l~~~~~---~~~~~L~~L~l~~N~l~-----------~~~~~~~~~l~~L~~L 149 (317)
T 3o53_A 89 NNYVQELLV----GPSIETLHAAN-NNISRVSC---SRGQGKKNIYLANNKIT-----------MLRDLDEGCRSRVQYL 149 (317)
T ss_dssp SSEEEEEEE----CTTCCEEECCS-SCCSEEEE---CCCSSCEEEECCSSCCC-----------SGGGBCTGGGSSEEEE
T ss_pred CCccccccC----CCCcCEEECCC-CccCCcCc---cccCCCCEEECCCCCCC-----------CccchhhhccCCCCEE
Confidence 998887663 37889999988 45555653 34677888888888773 2334456677788888
Q ss_pred EeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEee
Q 036269 220 HIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILAL 299 (623)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 299 (623)
++++|.+..++.. .+...+++|++|++
T Consensus 150 ~Ls~N~l~~~~~~-----------------------------------------------------~~~~~l~~L~~L~L 176 (317)
T 3o53_A 150 DLKLNEIDTVNFA-----------------------------------------------------ELAASSDTLEHLNL 176 (317)
T ss_dssp ECTTSCCCEEEGG-----------------------------------------------------GGGGGTTTCCEEEC
T ss_pred ECCCCCCCcccHH-----------------------------------------------------HHhhccCcCCEEEC
Confidence 8877765433211 00000145666666
Q ss_pred cccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEE
Q 036269 300 GDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRL 379 (623)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 379 (623)
++|.. ..+ +.. ..+++|++|++++| .++.++. ....+++|+.|+++++. ++.+. .. ...+++|+.|
T Consensus 177 ~~N~l-~~~-~~~--~~l~~L~~L~Ls~N-~l~~l~~-----~~~~l~~L~~L~L~~N~-l~~l~-~~--~~~l~~L~~L 242 (317)
T 3o53_A 177 QYNFI-YDV-KGQ--VVFAKLKTLDLSSN-KLAFMGP-----EFQSAAGVTWISLRNNK-LVLIE-KA--LRFSQNLEHF 242 (317)
T ss_dssp TTSCC-CEE-ECC--CCCTTCCEEECCSS-CCCEECG-----GGGGGTTCSEEECTTSC-CCEEC-TT--CCCCTTCCEE
T ss_pred CCCcC-ccc-ccc--cccccCCEEECCCC-cCCcchh-----hhcccCcccEEECcCCc-ccchh-hH--hhcCCCCCEE
Confidence 65542 222 111 23677888888877 5555543 23456778888887775 43321 11 2356778888
Q ss_pred EEeecCCcccccchhHHHhccccceEEEecccccee
Q 036269 380 DVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVS 415 (623)
Q Consensus 380 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 415 (623)
++++++...+..+ .++..++.|+.+++.+++.++.
T Consensus 243 ~l~~N~~~~~~~~-~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 243 DLRGNGFHCGTLR-DFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp ECTTCCCBHHHHH-HHHHTCHHHHHHHHHHHHHHHS
T ss_pred EccCCCccCcCHH-HHHhccccceEEECCCchhccC
Confidence 8887544324333 3467777777777776665543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.8e-18 Score=165.18 Aligned_cols=195 Identities=23% Similarity=0.354 Sum_probs=159.0
Q ss_pred CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh-hhccccCcEEe
Q 036269 36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS-LSFLINLRTLS 114 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~-~~~l~~L~~L~ 114 (623)
...+.++++++.++.+|.... ++++.|++++|.+..++...|.++++|++|++++|.+ ..+|.. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL---QTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC---SCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc---CeeChhhhcCCCCCCEEE
Confidence 457889999999988887553 6789999999999888876678999999999999988 566654 57889999999
Q ss_pred ccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 115 LHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 115 l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
+++|. +..+ ..+..+++|++|++++|.++.+| ..+..+++|++|++++ +.++.++...+..+++|++|++++|.+
T Consensus 92 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 92 VTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcC
Confidence 99998 8766 46788899999999999998776 4578899999999999 567778877688899999999999877
Q ss_pred ccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269 192 HWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG 247 (623)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~ 247 (623)
. ...+..+..+++|+.|++++|.+..++.. ..+++|+.+++++++
T Consensus 170 ~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 170 K-----------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp S-----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred c-----------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 3 22234577889999999999988877765 667889998888775
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=5.7e-18 Score=163.03 Aligned_cols=189 Identities=24% Similarity=0.386 Sum_probs=160.2
Q ss_pred ecCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccC
Q 036269 21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLF 98 (623)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~ 98 (623)
..+..+..+|. ...++++.|++++|.++.++.. + .+++|++|++++|.+..++..+|.++++|++|++++|.+ .
T Consensus 23 ~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l---~ 98 (270)
T 2o6q_A 23 CSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL---Q 98 (270)
T ss_dssp CTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC---C
T ss_pred ccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC---C
Confidence 34466777774 3447899999999999988863 3 899999999999999999988889999999999999999 5
Q ss_pred CCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhh
Q 036269 99 SLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGV 174 (623)
Q Consensus 99 ~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~ 174 (623)
.+|. .+..+++|++|++++|. +..+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.+..++...
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~ 176 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGA 176 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTT
T ss_pred cCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhH
Confidence 5654 56889999999999998 8776 4578999999999999999988754 78999999999999 5677788766
Q ss_pred hhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269 175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG 226 (623)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 226 (623)
+.++++|++|++++|.+. ......+..+++|+.|++++|.+
T Consensus 177 ~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLK-----------RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred hccCCCcCEEECCCCcCC-----------cCCHHHhccccCCCEEEecCCCe
Confidence 889999999999999873 22233577899999999999875
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=2.5e-17 Score=175.63 Aligned_cols=189 Identities=19% Similarity=0.150 Sum_probs=147.9
Q ss_pred ceeeecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccc
Q 036269 17 KFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFS 96 (623)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~ 96 (623)
......++.+..+|.. ..++++.|++++|.++.+|. .+++|++|++++|.+..+|. .+++|++|++++|.+
T Consensus 43 ~~L~ls~n~L~~lp~~-l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l-- 113 (622)
T 3g06_A 43 AVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPL-- 113 (622)
T ss_dssp CEEECCSSCCSCCCSC-CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCC--
T ss_pred cEEEecCCCcCccChh-hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcC--
Confidence 3445556778888853 34899999999999999987 57899999999999998885 689999999999999
Q ss_pred cCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhh
Q 036269 97 LFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLS 176 (623)
Q Consensus 97 ~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~ 176 (623)
..+|. .+++|+.|++++|. +..++. .+++|++|++++|.++.+|. .+.+|+.|++++ +.++.+| .
T Consensus 114 -~~l~~---~l~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~ 178 (622)
T 3g06_A 114 -THLPA---LPSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----M 178 (622)
T ss_dssp -CCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----C
T ss_pred -CCCCC---CCCCcCEEECCCCC-CCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----c
Confidence 67776 67899999999998 877743 35899999999999998885 357899999999 5677777 3
Q ss_pred ccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeC
Q 036269 177 RLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIG 246 (623)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 246 (623)
.+++|+.|++++|.+. .++. .+++|+.|++++|.+..++.. +++|+.|++++|
T Consensus 179 ~~~~L~~L~Ls~N~l~------------~l~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N 231 (622)
T 3g06_A 179 LPSGLQELSVSDNQLA------------SLPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN 231 (622)
T ss_dssp CCTTCCEEECCSSCCS------------CCCC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS
T ss_pred cCCCCcEEECCCCCCC------------CCCC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCC
Confidence 4688999999999872 2222 246788888888877665532 345555555444
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=1.2e-18 Score=164.58 Aligned_cols=201 Identities=14% Similarity=0.259 Sum_probs=164.3
Q ss_pred CCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCC-CCCCChhhHhCCCcccEEEccC-CcccccCCC
Q 036269 25 ELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKND-LLDIPDPFFQGMKDLKVLDLGG-SGVFSLFSL 100 (623)
Q Consensus 25 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~-~~~l~~~~~~~l~~Lr~L~l~~-~~~~~~~~l 100 (623)
.+..+|. ..++++.|++++|.++.+++. + .+++|+.|++++|. +..++...|.++++|++|++++ |.+ ..+
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l---~~i 96 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL---TYI 96 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC---CEE
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe---eEc
Confidence 3777776 456899999999999988873 3 88999999999997 7778776789999999999998 888 555
Q ss_pred c-hhhhccccCcEEeccCCcCCCCcccccCCcCCc---EEEcCCC-CCccccc-cccCCCccC-EEeccCCCCCCcCchh
Q 036269 101 P-SSLSFLINLRTLSLHDCQHFGDLSLIGELSLLE---ILDLSES-DVSEIPV-SFGRLGHLR-LLDLTDCYNLELIPRG 173 (623)
Q Consensus 101 p-~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~---~L~l~~~-~i~~lp~-~i~~l~~L~-~L~l~~~~~~~~l~~~ 173 (623)
| ..+..+++|++|++++|. +..++.+..+++|+ +|++++| .++.+|. .+..+++|+ +|++++ +.++.+|..
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~ 174 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGY 174 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTT
T ss_pred CHHHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHh
Confidence 5 467889999999999998 87776688888888 9999999 9988875 488999999 999998 556688876
Q ss_pred hhhccccCcEEEecccc-cccccccccccccccccccccCC-CCccEEEeecCCCccCCCcccccCccEEEEEe
Q 036269 174 VLSRLRKLEELYMSKTF-CHWQFENEDDSRSNAKFIELGAL-SRLTSLHIDIPEGEIMPSDMSFQNLTSFSITI 245 (623)
Q Consensus 174 ~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 245 (623)
++.. ++|+.|++++|. +. ...+..++.+ ++|+.|++++|.+..+|.. .+++|+.|++.+
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~-----------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~ 235 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLT-----------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARN 235 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCC-----------EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTT
T ss_pred hcCC-CCCCEEEcCCCCCcc-----------cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccC
Confidence 5555 899999999984 62 2223456778 8999999999998888766 678888887654
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.6e-17 Score=162.89 Aligned_cols=188 Identities=22% Similarity=0.286 Sum_probs=163.2
Q ss_pred eecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269 20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS 99 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~ 99 (623)
...+..+..++.+..+++|+.|++++|.++.++....+++|+.|++++|.+..++. +..+++|++|++++|.+ ..
T Consensus 47 ~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l---~~ 121 (308)
T 1h6u_A 47 SAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQI---TD 121 (308)
T ss_dssp ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCC---CC
T ss_pred EeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCC---CC
Confidence 33455677888888999999999999999999885589999999999999988764 69999999999999999 56
Q ss_pred CchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccc
Q 036269 100 LPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR 179 (623)
Q Consensus 100 lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~ 179 (623)
++. +..+++|++|++++|. +..+..++.+++|++|++++|.++.++. +..+++|+.|++++ +.+..++. +..++
T Consensus 122 ~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~ 195 (308)
T 1h6u_A 122 VTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD-NKISDISP--LASLP 195 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCT
T ss_pred chh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC-CccCcChh--hcCCC
Confidence 665 8899999999999998 8888779999999999999999998876 89999999999999 56677775 78999
Q ss_pred cCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCC
Q 036269 180 KLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPS 231 (623)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 231 (623)
+|++|++++|.+. ..+ .+..+++|+.|++++|.+...+.
T Consensus 196 ~L~~L~L~~N~l~------------~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 196 NLIEVHLKNNQIS------------DVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TCCEEECTTSCCC------------BCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCEEEccCCccC------------ccc-cccCCCCCCEEEccCCeeecCCe
Confidence 9999999999883 222 48899999999999998755543
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=1.2e-18 Score=167.98 Aligned_cols=176 Identities=26% Similarity=0.377 Sum_probs=103.1
Q ss_pred CCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccC
Q 036269 32 INTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINL 110 (623)
Q Consensus 32 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L 110 (623)
...+++++.|+++++.++.++....+++|++|++++|.+..++. +.++++|++|++++|.+ ..++ ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQL---QSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTSCC---CCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCCcc---CccChhHhcCCcCC
Confidence 34456666666666666666554466666666666666665432 46666666666666666 3333 335566666
Q ss_pred cEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEec
Q 036269 111 RTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187 (623)
Q Consensus 111 ~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~ 187 (623)
++|++++|. +..+ ..++++++|++|++++|.++.+|.. ++++++|++|++++| .++.++...+..+++|++|+++
T Consensus 112 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 112 KELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECC
Confidence 666666666 5544 2356666666666666666655432 456666666666663 3445554445666666666666
Q ss_pred ccccccccccccccccccccccccCCCCccEEEeecCC
Q 036269 188 KTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE 225 (623)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 225 (623)
+|.+. ...+..++.+++|+.|++++|.
T Consensus 190 ~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 190 QNQLK-----------SVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SSCCS-----------CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCC-----------ccCHHHHhCCcCCCEEEccCCC
Confidence 66552 2222334556666666666554
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2.4e-18 Score=179.87 Aligned_cols=237 Identities=15% Similarity=0.119 Sum_probs=161.4
Q ss_pred CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcE
Q 036269 56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEI 135 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~ 135 (623)
.+++|+.|++++|.+..+++..|.++++|++|++++|.+. ..++ +..+++|++|++++|. +..+. ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE---EEEE-CTTCTTCCEEECCSSE-EEEEE---ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC---CCcc-cccCCCCCEEEecCCc-CCCCC---CCCCcCE
Confidence 3457888899888888777666788889999999888884 3333 7788889999998887 65543 3378888
Q ss_pred EEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccccccccccccccccc-CCC
Q 036269 136 LDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELG-ALS 214 (623)
Q Consensus 136 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~ 214 (623)
|++++|.++.++. ..+++|++|++++| .+..+++..++.+++|+.|++++|.+. ...+..+. .++
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~l~~~l~ 169 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSD 169 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTT
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCC-----------CcChHHHhhhCC
Confidence 9998888887664 35688888888884 445554434788888889998888773 33445554 678
Q ss_pred CccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhc
Q 036269 215 RLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRS 294 (623)
Q Consensus 215 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L 294 (623)
+|+.|++++|.+..++....+++|+.|+++++.... +|..+..+ ++|
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~--------------------------------~~~~~~~l-~~L 216 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF--------------------------------MGPEFQSA-AGV 216 (487)
T ss_dssp TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE--------------------------------ECGGGGGG-TTC
T ss_pred cccEEecCCCccccccccccCCCCCEEECCCCCCCC--------------------------------CCHhHcCC-CCc
Confidence 888899888887777665667778888777665332 22222222 678
Q ss_pred eeEeecccCCcccccccccccCccCccEEEEecccCce-eecccccccccccccccceeecc
Q 036269 295 EILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK-YLLNSLERTLRVTLLKLEWLMIV 355 (623)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~L~~L~l~ 355 (623)
+.|++++|.. ..++..+ ..+++|+.|++++|+-.. .++. ....++.|+.+.+.
T Consensus 217 ~~L~Ls~N~l-~~lp~~l--~~l~~L~~L~l~~N~l~c~~~~~-----~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 217 TWISLRNNKL-VLIEKAL--RFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQ 270 (487)
T ss_dssp SEEECTTSCC-CEECTTC--CCCTTCCEEECTTCCBCHHHHHH-----HHTTCHHHHHHHHH
T ss_pred cEEEecCCcC-cccchhh--ccCCCCCEEEcCCCCCcCcchHH-----HHHhCCCCcEEecc
Confidence 8888877653 3333333 456788888888873221 1111 23445666666664
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2.8e-17 Score=159.49 Aligned_cols=186 Identities=22% Similarity=0.190 Sum_probs=161.0
Q ss_pred ecCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccC
Q 036269 21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLF 98 (623)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~ 98 (623)
..+..+..+|. ...+.++.|++++|.++.++.. + .+++|+.|++++|.+..++. ...+++|++|++++|.+ .
T Consensus 17 ~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l---~ 90 (290)
T 1p9a_G 17 CDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQL---Q 90 (290)
T ss_dssp CTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCC---S
T ss_pred CCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcC---C
Confidence 34566777773 3458899999999999887643 3 89999999999999987665 37899999999999999 7
Q ss_pred CCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhh
Q 036269 99 SLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVL 175 (623)
Q Consensus 99 ~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~ 175 (623)
.+|..+..+++|++|++++|. ++.+ ..+.++++|++|++++|.++.+|.. +..+++|+.|++++ +.++.+|.+++
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~ 168 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLL 168 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTT
T ss_pred cCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHh
Confidence 889888999999999999999 8777 5689999999999999999988754 67999999999999 67788998878
Q ss_pred hccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269 176 SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG 226 (623)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 226 (623)
.++++|+.|++++|.+ ..++..+....+|+.+++++|.+
T Consensus 169 ~~l~~L~~L~L~~N~l------------~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 169 NGLENLDTLLLQENSL------------YTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCTTCCEEECCSSCC------------CCCCTTTTTTCCCSEEECCSCCB
T ss_pred cCcCCCCEEECCCCcC------------CccChhhcccccCCeEEeCCCCc
Confidence 8999999999999988 35677778888999999999875
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=3.9e-17 Score=155.36 Aligned_cols=175 Identities=23% Similarity=0.332 Sum_probs=137.2
Q ss_pred CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269 36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l 115 (623)
...++++++++.++.+|.... +.++.|++++|.+..++...|.++++|++|++++|.+. +..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC--ccCHhHhccCCcCCEEEC
Confidence 456778888888888887654 67899999999988777766788999999999999884 344455788899999999
Q ss_pred cCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccc
Q 036269 116 HDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 116 ~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 192 (623)
++|. +..+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.++.+.+..+++|++|++++|.+.
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 9988 7666 4678888999999999988877754 57888999999988 4667777655788888888888888773
Q ss_pred cccccccccccccccccccCCCCccEEEeecCCC
Q 036269 193 WQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG 226 (623)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 226 (623)
...+..+..+++|+.|++++|.+
T Consensus 169 -----------~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 169 -----------SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp -----------CCCTTTTTTCTTCCEEECCSCCB
T ss_pred -----------ccCHHHHhCCCCCCEEEeeCCce
Confidence 22234567778888888887764
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=2.4e-17 Score=158.78 Aligned_cols=195 Identities=21% Similarity=0.317 Sum_probs=159.8
Q ss_pred CCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269 35 FEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114 (623)
Q Consensus 35 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~ 114 (623)
+.++..+++..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++|.+ ..++ .+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l---~~~~-~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKL---HDIS-ALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCC---CCCG-GGTTCTTCCEEE
T ss_pred HHHHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCC---CCch-hhcCCCCCCEEE
Confidence 34455556666666666555578899999999999887765 68999999999999998 5554 688999999999
Q ss_pred ccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 115 LHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 115 l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
+++|. +..+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++| .++.++...+..+++|+.|++++|.+
T Consensus 92 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 92 LTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCc
Confidence 99998 8776 4478999999999999999977654 789999999999995 66778777678999999999999987
Q ss_pred ccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCC
Q 036269 192 HWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGP 248 (623)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~ 248 (623)
. ...+..++.+++|+.|++++|.+..++.. ..+++|+.|++++++.
T Consensus 170 ~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 170 Q-----------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp C-----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred C-----------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 3 23334468899999999999998877764 6789999999988863
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=3.7e-17 Score=158.07 Aligned_cols=194 Identities=21% Similarity=0.252 Sum_probs=154.3
Q ss_pred EEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCC
Q 036269 40 GISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDC 118 (623)
Q Consensus 40 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~ 118 (623)
.++..+..+..+|..+. +++++|++++|.+..++...|.++++|++|++++|.+ ..++ ..+..+++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcC---CccCHHHccCCcCCCEEECCCC
Confidence 45566667778887653 5799999999999977776679999999999999999 4544 47889999999999999
Q ss_pred cCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCc--CchhhhhccccCcEEEeccccccc
Q 036269 119 QHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLEL--IPRGVLSRLRKLEELYMSKTFCHW 193 (623)
Q Consensus 119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~--l~~~~~~~l~~L~~L~l~~~~~~~ 193 (623)
. +..+ ..+.++++|++|++++|.+..++. .++++++|++|++++| .++. +|.. +.++++|++|++++|.+..
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 87 P-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp C-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred c-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCc
Confidence 8 8666 568999999999999999997764 6899999999999995 4554 5654 8999999999999998732
Q ss_pred ccccccccccccccccccCCCCcc----EEEeecCCCccCCCc-ccccCccEEEEEeCCCCCC
Q 036269 194 QFENEDDSRSNAKFIELGALSRLT----SLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEV 251 (623)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 251 (623)
..+..++.+++|+ .|++++|.+..++.. ....+|+.|+++++.....
T Consensus 164 -----------~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 164 -----------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV 215 (276)
T ss_dssp -----------ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC
T ss_pred -----------CCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeec
Confidence 2223344444444 899999998877765 4455899999988765443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=6.3e-18 Score=159.64 Aligned_cols=189 Identities=16% Similarity=0.197 Sum_probs=155.7
Q ss_pred ccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCc-ccccCCCch-hhhccccCcEEeccC-CcC
Q 036269 44 MFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG-VFSLFSLPS-SLSFLINLRTLSLHD-CQH 120 (623)
Q Consensus 44 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~-~~~~~~lp~-~~~~l~~L~~L~l~~-~~~ 120 (623)
....++.+|. . .++++.|++++|.+..++...|.++++|++|++++|. + +.++. .+..+++|++|++++ |.
T Consensus 19 ~c~~l~~ip~-~-~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l---~~i~~~~f~~l~~L~~L~l~~~n~- 92 (239)
T 2xwt_C 19 TCKDIQRIPS-L-PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL---QQLESHSFYNLSKVTHIEIRNTRN- 92 (239)
T ss_dssp EECSCSSCCC-C-CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC---CEECTTTEESCTTCCEEEEEEETT-
T ss_pred EccCccccCC-C-CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc---ceeCHhHcCCCcCCcEEECCCCCC-
Confidence 3444788887 3 3589999999999998888778999999999999997 7 56665 688999999999998 66
Q ss_pred CCCc--ccccCCcCCcEEEcCCCCCccccccccCCCccC---EEeccCCCCCCcCchhhhhccccCc-EEEecccccccc
Q 036269 121 FGDL--SLIGELSLLEILDLSESDVSEIPVSFGRLGHLR---LLDLTDCYNLELIPRGVLSRLRKLE-ELYMSKTFCHWQ 194 (623)
Q Consensus 121 l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~---~L~l~~~~~~~~l~~~~~~~l~~L~-~L~l~~~~~~~~ 194 (623)
++.+ ..+.++++|++|++++|.++.+|. +..+++|+ +|++++|..++.++...+.++++|+ .|++++|.+.
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-- 169 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-- 169 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--
Confidence 8777 468899999999999999999986 88889998 9999996478888887789999999 9999999873
Q ss_pred cccccccccccccccccCCCCccEEEeecCC-CccCCCc--ccc-cCccEEEEEeCCCCCC
Q 036269 195 FENEDDSRSNAKFIELGALSRLTSLHIDIPE-GEIMPSD--MSF-QNLTSFSITIGGPEEV 251 (623)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~--~~~-~~L~~L~l~~~~~~~~ 251 (623)
.++......++|+.|++++|. +..++.. ..+ ++|+.|+++++.....
T Consensus 170 ----------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 170 ----------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp ----------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred ----------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence 333333334789999999995 8888665 567 8999999887664433
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=3.1e-17 Score=159.34 Aligned_cols=173 Identities=31% Similarity=0.364 Sum_probs=118.0
Q ss_pred CCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269 32 INTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR 111 (623)
Q Consensus 32 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~ 111 (623)
...+++++.|++++|.++.++....+++|+.|++++|.+..+++ +.++++|++|++++|.+ ..+|. +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l---~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV---KDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCGGG-GTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC---CCChh-hccCCCCC
Confidence 34556677777777777777654467777777777777776665 57777777777777777 44443 66777777
Q ss_pred EEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 112 TLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 112 ~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
+|++++|. +..++.+..+++|++|++++|.++.+ ..+.++++|++|++++ +.+..++. +..+++|+.|++++|.+
T Consensus 116 ~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 116 SLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcC
Confidence 77777776 76666677777777777777777766 3567777777777777 34555554 66777777777777766
Q ss_pred ccccccccccccccccccccCCCCccEEEeecCCCcc
Q 036269 192 HWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEI 228 (623)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (623)
. . ...+..+++|+.|++++|.+..
T Consensus 191 ~------------~-l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 S------------D-LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C------------B-CGGGTTCTTCSEEEEEEEEEEC
T ss_pred C------------C-ChhhccCCCCCEEECcCCcccC
Confidence 2 1 2236667777777777765433
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=3e-18 Score=168.74 Aligned_cols=173 Identities=20% Similarity=0.255 Sum_probs=80.6
Q ss_pred CCCcceEEccCCCCC-CCChhhH-hCCCcccEEEccCCcccccCCCchhhhcc-----ccCcEEeccCCcCCCCc--ccc
Q 036269 57 CPRLQALFLQKNDLL-DIPDPFF-QGMKDLKVLDLGGSGVFSLFSLPSSLSFL-----INLRTLSLHDCQHFGDL--SLI 127 (623)
Q Consensus 57 ~~~L~~L~l~~~~~~-~l~~~~~-~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~l~~i--~~~ 127 (623)
+++|++|++++|.+. .+|..+| ..+++|++|++++|.+ ..+|..+..+ ++|++|++++|. +..+ ..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW---ATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC---SSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC---cchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence 455555555555554 3443322 4555555555555555 3334444444 555555555555 4333 345
Q ss_pred cCCcCCcEEEcCCCCCcc---ccccc--cCCCccCEEeccCCCCCC---cCchhhhhccccCcEEEeccccccccccccc
Q 036269 128 GELSLLEILDLSESDVSE---IPVSF--GRLGHLRLLDLTDCYNLE---LIPRGVLSRLRKLEELYMSKTFCHWQFENED 199 (623)
Q Consensus 128 ~~l~~L~~L~l~~~~i~~---lp~~i--~~l~~L~~L~l~~~~~~~---~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 199 (623)
+++++|++|++++|.+.. +|..+ +++++|++|++++| .++ .++..++..+++|++|++++|.+.
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------- 241 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLR------- 241 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCC-------
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCC-------
Confidence 555555555555555431 22223 45555555555552 233 222222334455555555555442
Q ss_pred ccccccc-cccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeC
Q 036269 200 DSRSNAK-FIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIG 246 (623)
Q Consensus 200 ~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 246 (623)
... ...+..+++|+.|++++|.+..+|.... ++|+.|+++++
T Consensus 242 ----~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N 284 (312)
T 1wwl_A 242 ----DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYN 284 (312)
T ss_dssp ----SSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSS
T ss_pred ----cccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCC
Confidence 111 1223334555555555555544444322 44455544444
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.1e-17 Score=174.72 Aligned_cols=192 Identities=17% Similarity=0.152 Sum_probs=157.1
Q ss_pred CCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269 34 TFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR 111 (623)
Q Consensus 34 ~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~ 111 (623)
.+++|+.|++++|.++.+++ .+ .+++|++|++++|.+...++ |..+++|++|++++|.+ ..+|. .++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l---~~l~~----~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV---QELLV----GPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEE---EEEEE----CTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcC---CCCCC----CCCcC
Confidence 34689999999999988864 34 89999999999999986555 69999999999999999 55553 38999
Q ss_pred EEeccCCcCCCCcccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccc
Q 036269 112 TLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTF 190 (623)
Q Consensus 112 ~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 190 (623)
+|++++|. +..+.. ..+++|++|++++|.++.+ |..++.+++|++|++++|...+..|..+...+++|+.|++++|.
T Consensus 103 ~L~L~~N~-l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 103 TLHAANNN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EEECCSSC-CCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECcCCc-CCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999 877632 3578999999999999966 56889999999999999554444555533489999999999998
Q ss_pred cccccccccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCC
Q 036269 191 CHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPE 249 (623)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 249 (623)
+. .. .....+++|+.|++++|.+..++.. ..+++|+.|+++++...
T Consensus 181 l~------------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 181 IY------------DV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CC------------EE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred cc------------cc-cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 83 12 3345689999999999999888776 78899999999887644
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=3.6e-16 Score=148.66 Aligned_cols=166 Identities=25% Similarity=0.399 Sum_probs=143.1
Q ss_pred ecCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccC
Q 036269 21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLF 98 (623)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~ 98 (623)
..+..+..+|. ...+.++.|++++|.++.+++. + .+++|++|++++|.+..+++..|.++++|++|++++|.+ .
T Consensus 21 ~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~ 96 (251)
T 3m19_A 21 CQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL---A 96 (251)
T ss_dssp CTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC---C
T ss_pred cCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc---c
Confidence 34566777774 3447899999999999888764 3 899999999999999988887789999999999999999 5
Q ss_pred CCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhh
Q 036269 99 SLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGV 174 (623)
Q Consensus 99 ~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~ 174 (623)
.+| ..+..+++|++|++++|. ++.+ ..+..+++|++|++++|.++.+|. .++.+++|++|++++ +.+..++...
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~ 174 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGA 174 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTT
T ss_pred ccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHH
Confidence 555 557899999999999998 8777 347899999999999999998876 689999999999999 5677787766
Q ss_pred hhccccCcEEEecccccc
Q 036269 175 LSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~ 192 (623)
+..+++|+.|++++|.+.
T Consensus 175 ~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTCTTCCEEECCSCCBC
T ss_pred HhCCCCCCEEEeeCCcee
Confidence 899999999999999873
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2e-16 Score=153.70 Aligned_cols=189 Identities=21% Similarity=0.242 Sum_probs=159.5
Q ss_pred CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269 36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l 115 (623)
.++..+.+..+.++.+.....+++|+.|++++|.+..++. +..+++|++|++++|.+ ..++. +..+++|++|++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l---~~~~~-l~~l~~L~~L~l 97 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL---TDIKP-LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCC---CCCGG-GTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCcc---CCCcc-cccCCCCCEEEC
Confidence 3344455666666655544577899999999999998875 68999999999999999 56666 889999999999
Q ss_pred cCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccc
Q 036269 116 HDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQF 195 (623)
Q Consensus 116 ~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 195 (623)
++|. +..++.+..+++|++|++++|.++.++ .+..+++|++|++++ +.++.++. +..+++|++|++++|.+.
T Consensus 98 ~~n~-l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~--- 169 (291)
T 1h6t_A 98 DENK-VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQIS--- 169 (291)
T ss_dssp CSSC-CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCC---
T ss_pred CCCc-CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCccc---
Confidence 9999 988888999999999999999999875 688999999999999 45666643 899999999999999873
Q ss_pred ccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCC
Q 036269 196 ENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGP 248 (623)
Q Consensus 196 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 248 (623)
..+. ++.+++|+.|++++|.+..++....+++|+.|+++++..
T Consensus 170 ---------~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 170 ---------DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ---------CCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred ---------cchh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 2222 889999999999999998887668899999999998763
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=6e-17 Score=159.39 Aligned_cols=196 Identities=17% Similarity=0.108 Sum_probs=156.1
Q ss_pred CCCCCcEEEcccCCcc-ccccc---CCCCCcceEEccCCCCCCCChhhHhCC-----CcccEEEccCCcccccCCCchhh
Q 036269 34 TFEDLTGISLMFNDIH-EVHEG---LQCPRLQALFLQKNDLLDIPDPFFQGM-----KDLKVLDLGGSGVFSLFSLPSSL 104 (623)
Q Consensus 34 ~~~~l~~L~l~~~~~~-~l~~~---~~~~~L~~L~l~~~~~~~l~~~~~~~l-----~~Lr~L~l~~~~~~~~~~lp~~~ 104 (623)
.++++++|++++|.++ .+|.. ..+++|++|++++|.+..+|.. +..+ ++|++|++++|.+. +..|..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~--~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSL--NFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCC--CCCTTTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCc--cchHHHh
Confidence 3688999999999997 56664 3789999999999999977654 4666 99999999999994 3444788
Q ss_pred hccccCcEEeccCCcCCCC----cccc--cCCcCCcEEEcCCCCCcccc----ccccCCCccCEEeccCCCCCCcCchhh
Q 036269 105 SFLINLRTLSLHDCQHFGD----LSLI--GELSLLEILDLSESDVSEIP----VSFGRLGHLRLLDLTDCYNLELIPRGV 174 (623)
Q Consensus 105 ~~l~~L~~L~l~~~~~l~~----i~~~--~~l~~L~~L~l~~~~i~~lp----~~i~~l~~L~~L~l~~~~~~~~l~~~~ 174 (623)
..+++|++|++++|. +.. +..+ +.+++|++|++++|.++.++ ..+..+++|++|++++|......|...
T Consensus 170 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 170 RVFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred ccCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 999999999999998 532 2333 88999999999999998543 234578999999999955444343333
Q ss_pred hhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCC
Q 036269 175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGG 247 (623)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 247 (623)
+..+++|++|++++|.+. .++..+. ++|+.|++++|.+..+|....+++|+.|+++++.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~------------~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK------------QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCTTCCEEECTTSCCS------------SCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCT
T ss_pred hhhcCCCCEEECCCCccC------------hhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCC
Confidence 667899999999999883 4455555 7899999999998888766778888888887765
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=3e-16 Score=167.08 Aligned_cols=181 Identities=30% Similarity=0.363 Sum_probs=146.5
Q ss_pred CCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhh
Q 036269 26 LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLS 105 (623)
Q Consensus 26 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~ 105 (623)
+.+......++.|+.|++++|.+..++....+++|+.|+|++|.+..+++ +..+++|++|++++|.+ ..+| .+.
T Consensus 33 i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l---~~l~-~l~ 106 (605)
T 1m9s_A 33 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI---KDLS-SLK 106 (605)
T ss_dssp TTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC---CCCT-TST
T ss_pred cccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC---CCCh-hhc
Confidence 34444456678889999999998888765588999999999999887776 68899999999999988 5555 578
Q ss_pred ccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEE
Q 036269 106 FLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185 (623)
Q Consensus 106 ~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~ 185 (623)
.+++|++|++++|. +..++.+..+++|+.|++++|.++.+ ..+..+++|+.|++++| .+..+++ +..+++|+.|+
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLY 181 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEE
T ss_pred cCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEE
Confidence 88999999999998 88887888899999999999988877 47888999999999984 5555655 78889999999
Q ss_pred ecccccccccccccccccccccccccCCCCccEEEeecCCCccCC
Q 036269 186 MSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMP 230 (623)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 230 (623)
+++|.+. . +..+..+++|+.|++++|.+...|
T Consensus 182 Ls~N~i~------------~-l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 182 LSKNHIS------------D-LRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCSSCCC------------B-CGGGTTCTTCSEEECCSEEEECCC
T ss_pred CcCCCCC------------C-ChHHccCCCCCEEEccCCcCcCCc
Confidence 9998772 2 245788889999999988765444
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=4.1e-16 Score=156.01 Aligned_cols=193 Identities=18% Similarity=0.162 Sum_probs=126.9
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEec-c
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSL-H 116 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l-~ 116 (623)
+.++.+++.++++|..+ .++++.|++++|.+..++..+|+++++|++|++++|.+. +.+|. .|.++++++.+.. .
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~--~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL--EVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC--CEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC--CccChhHhhcchhhhhhhccc
Confidence 45666777777777655 256788888888888777776788888888888888764 44543 4567777665444 4
Q ss_pred CCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccc-cCcEEEecccccc
Q 036269 117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLR-KLEELYMSKTFCH 192 (623)
Q Consensus 117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~-~L~~L~l~~~~~~ 192 (623)
+|. +..+ ..+..+++|++|++++|.+..+|. .+....++..+++.+++.+..++...+..+. .++.|++++|.+
T Consensus 89 ~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i- 166 (350)
T 4ay9_X 89 ANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI- 166 (350)
T ss_dssp ETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-
T ss_pred CCc-ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-
Confidence 444 6665 457778888888888888776653 3445666777777776777777765455543 577777777776
Q ss_pred cccccccccccccccccccCCCCccEEEeec-CCCccCCCc--ccccCccEEEEEeCC
Q 036269 193 WQFENEDDSRSNAKFIELGALSRLTSLHIDI-PEGEIMPSD--MSFQNLTSFSITIGG 247 (623)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~--~~~~~L~~L~l~~~~ 247 (623)
..++.......+|+.+++.+ |.++.++.. ..+++|+.|+++++.
T Consensus 167 -----------~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 167 -----------QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp -----------CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred -----------cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 23444444555677777764 456666654 455566666655544
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=1.2e-16 Score=159.48 Aligned_cols=122 Identities=19% Similarity=0.196 Sum_probs=61.8
Q ss_pred cceEEccCCCCCCCChhhHhCC--CcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCC--c-ccccCCcCCc
Q 036269 60 LQALFLQKNDLLDIPDPFFQGM--KDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD--L-SLIGELSLLE 134 (623)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~l--~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~--i-~~~~~l~~L~ 134 (623)
++.++++++.+. +..+..+ +.+++|+++++.+ ...+..+..+++|++|++++|. +.. + ..+..+++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l---~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFM---DQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEE---CSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCS
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccc---cccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCC
Confidence 455555555433 2223444 5566666666555 2333334455566666666555 432 2 3445555556
Q ss_pred EEEcCCCCCc-cccccccCCCccCEEeccCCCCCCc--CchhhhhccccCcEEEeccc
Q 036269 135 ILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLEL--IPRGVLSRLRKLEELYMSKT 189 (623)
Q Consensus 135 ~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~--l~~~~~~~l~~L~~L~l~~~ 189 (623)
+|++++|.++ ..|..++++++|++|++++|..++. ++. .+.++++|++|++++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWC 178 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCC
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCC
Confidence 6665555554 3444555556666666665433332 232 2455555555555555
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=6.7e-16 Score=140.77 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=96.9
Q ss_pred CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCC--cccccCCcCC
Q 036269 56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD--LSLIGELSLL 133 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~--i~~~~~l~~L 133 (623)
.+++|+.|++++|.+.+++. +..+++|++|++++|.+ ..+ ..+..+++|++|++++|. +.. +..++.+++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~---~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA---TNY-NPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCC---SCC-GGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTC
T ss_pred hcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCC---Ccc-hhhhcCCCCCEEEeECCc-cCcccChhhcCCCCC
Confidence 45667777777777666663 46677777777777755 333 356667777777777766 644 3566677777
Q ss_pred cEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccC
Q 036269 134 EILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGA 212 (623)
Q Consensus 134 ~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (623)
++|++++|.++ ..|..++++++|++|++++|..++.++. +..+++|+.|++++|.+. . ...+..
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~------------~-~~~l~~ 179 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH------------D-YRGIED 179 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC------------C-CTTGGG
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc------------C-hHHhcc
Confidence 77777777776 3556677777777777777554666663 677777777777777662 1 225666
Q ss_pred CCCccEEEeecCCCc
Q 036269 213 LSRLTSLHIDIPEGE 227 (623)
Q Consensus 213 l~~L~~L~l~~~~~~ 227 (623)
+++|+.|++++|.++
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 777777777777653
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=3e-16 Score=149.87 Aligned_cols=171 Identities=19% Similarity=0.192 Sum_probs=127.1
Q ss_pred CCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269 34 TFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL 113 (623)
Q Consensus 34 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L 113 (623)
.+.++..++++.+.+++++....+++|+.|++++|.+..++. +..+++|++|++++|.+ ..++. +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i---~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQI---SDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCC---CCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCcc---CCChh-hccCCCCCEE
Confidence 445566677777777777744477888888888888877763 57888888888888888 55665 7788888888
Q ss_pred eccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269 114 SLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW 193 (623)
Q Consensus 114 ~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 193 (623)
++++|. ++.++.+.. ++|++|++++|.++.++ .+.++++|++|++++ +.++.++. +..+++|+.|++++|.+.
T Consensus 91 ~L~~N~-l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~- 163 (263)
T 1xeu_A 91 SVNRNR-LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEIT- 163 (263)
T ss_dssp ECCSSC-CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCC-
T ss_pred ECCCCc-cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCc-
Confidence 888887 777654444 78888888888888775 578888888888888 45666663 778888888888888772
Q ss_pred ccccccccccccccccccCCCCccEEEeecCCCccC
Q 036269 194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIM 229 (623)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 229 (623)
.. ..++.+++|+.|++++|.+...
T Consensus 164 -----------~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 -----------NT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -----------BC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred -----------ch-HHhccCCCCCEEeCCCCcccCC
Confidence 11 5577778888888887765443
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=154.22 Aligned_cols=217 Identities=14% Similarity=0.095 Sum_probs=162.1
Q ss_pred CCcEEEcccCCcc-----cccccCCCCCcceEEccCCCCC-CCChhhH-hCCCcccEEEccCCcccccCCCc----hhhh
Q 036269 37 DLTGISLMFNDIH-----EVHEGLQCPRLQALFLQKNDLL-DIPDPFF-QGMKDLKVLDLGGSGVFSLFSLP----SSLS 105 (623)
Q Consensus 37 ~l~~L~l~~~~~~-----~l~~~~~~~~L~~L~l~~~~~~-~l~~~~~-~~l~~Lr~L~l~~~~~~~~~~lp----~~~~ 105 (623)
.++.+.+..+.++ .+.....+++|+.|++++|.+. ..+..++ ..+++|++|++++|.+. +..+ ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA--TGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS--STTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc--chhhhhHHHHhh
Confidence 4677888877664 2333335577999999999988 4444433 78999999999999985 3333 2345
Q ss_pred ccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcc---cc--ccccCCCccCEEeccCCCCCCcCchh---hh
Q 036269 106 FLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSE---IP--VSFGRLGHLRLLDLTDCYNLELIPRG---VL 175 (623)
Q Consensus 106 ~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~---lp--~~i~~l~~L~~L~l~~~~~~~~l~~~---~~ 175 (623)
.+++|++|++++|. +..+ ..++.+++|++|++++|.+.. ++ ..++++++|++|++++| .++.++.. ++
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHH
Confidence 78999999999998 7665 578899999999999998753 43 23478999999999995 55555542 35
Q ss_pred hccccCcEEEecccccccccccccccccccccccccCC---CCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCC
Q 036269 176 SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGAL---SRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVP 252 (623)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 252 (623)
+.+++|++|++++|.+. ...+..++.+ ++|+.|++++|.+..+|... .++|+.|++++|....++
T Consensus 221 ~~l~~L~~L~Ls~N~l~-----------~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLR-----------ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp HHTCCCSSEECTTSCCC-----------CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCC
T ss_pred hcCCCCCEEECCCCCCC-----------ccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCc
Confidence 78899999999999883 2334555555 69999999999988887763 379999999998876553
Q ss_pred cchhhhhhhhcccccccceeeecccc
Q 036269 253 LSDFIEVFSRKFKKRCSRAMGLSQDM 278 (623)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~l~~~~ 278 (623)
. + ...+.++.+.+.++.
T Consensus 289 ~--~-------~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 289 Q--P-------DELPEVDNLTLDGNP 305 (310)
T ss_dssp C--T-------TSCCCCSCEECSSTT
T ss_pred h--h-------hhCCCccEEECcCCC
Confidence 2 1 145788888887764
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=2.8e-16 Score=154.52 Aligned_cols=221 Identities=16% Similarity=0.122 Sum_probs=154.9
Q ss_pred CCCCcceEEccCCCCCC-----CChhhHhCCCcccEEEccCCcccccCCCchhh--hccccCcEEeccCCcCCCCc----
Q 036269 56 QCPRLQALFLQKNDLLD-----IPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL--SFLINLRTLSLHDCQHFGDL---- 124 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~-----l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~--~~l~~L~~L~l~~~~~l~~i---- 124 (623)
....++.+.+.++.+.. +.. +..+++|++|++++|.+. +..|..+ ..+++|++|++++|. +...
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~ 136 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKIT--GTMPPLPLEATGLALSSLRLRNVS-WATGRSWL 136 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCB--SCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEec--cchhhhhhhccCCCCCEEEeeccc-ccchhhhh
Confidence 44557888888887651 111 234577999999999986 6677776 889999999999998 7542
Q ss_pred --ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCc--Cchh-hhhccccCcEEEecccccccccccc
Q 036269 125 --SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLEL--IPRG-VLSRLRKLEELYMSKTFCHWQFENE 198 (623)
Q Consensus 125 --~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~--l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 198 (623)
..+..+++|++|++++|.+..++ ..++.+++|++|++++|...+. ++.. .+..+++|++|++++|.+...
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l---- 212 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP---- 212 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----
Confidence 23457899999999999998665 6788999999999999654432 2221 236789999999999987310
Q ss_pred cccccccccc-cccCCCCccEEEeecCCCccC-CCc-cc---ccCccEEEEEeCCCCCCCcchhhhhhhhccccccccee
Q 036269 199 DDSRSNAKFI-ELGALSRLTSLHIDIPEGEIM-PSD-MS---FQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAM 272 (623)
Q Consensus 199 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~-~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 272 (623)
...+. .++.+++|+.|++++|.+... |.. .. +++|++|+++++.....+.. ..+.++.+
T Consensus 213 -----~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~----------~~~~L~~L 277 (310)
T 4glp_A 213 -----TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG----------LPAKLRVL 277 (310)
T ss_dssp -----HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC----------CCSCCSCE
T ss_pred -----HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh----------hcCCCCEE
Confidence 11111 246788999999999998776 443 33 37999999998886655421 12678888
Q ss_pred eeccccccccchHHHHHHHhhceeEeecccC
Q 036269 273 GLSQDMRISALPSWIKNLLLRSEILALGDVN 303 (623)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 303 (623)
++..+... .+|. +. .+++|+.|+++++.
T Consensus 278 ~Ls~N~l~-~~~~-~~-~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 278 DLSSNRLN-RAPQ-PD-ELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSCCCC-SCCC-TT-SCCCCSCEECSSTT
T ss_pred ECCCCcCC-CCch-hh-hCCCccEEECcCCC
Confidence 88876543 3332 11 22778888887765
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=3.4e-16 Score=166.65 Aligned_cols=191 Identities=21% Similarity=0.248 Sum_probs=162.3
Q ss_pred CCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269 35 FEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114 (623)
Q Consensus 35 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~ 114 (623)
+..+..+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++|.+ ..++. +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l---~~~~~-l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL---TDIKP-LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCC---CCCGG-GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCC---CCChh-hccCCCCCEEE
Confidence 34455666777777766655578899999999999998875 69999999999999999 56666 88999999999
Q ss_pred ccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269 115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ 194 (623)
Q Consensus 115 l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~ 194 (623)
+++|. +..++.+..+++|++|++++|.+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|.+.
T Consensus 94 Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~-- 166 (605)
T 1m9s_A 94 LDENK-IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS-- 166 (605)
T ss_dssp CCSSC-CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCC--
T ss_pred CcCCC-CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCC--
Confidence 99998 988888999999999999999999875 6889999999999994 5666643 899999999999999873
Q ss_pred cccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCC
Q 036269 195 FENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPE 249 (623)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 249 (623)
..+. +..+++|+.|++++|.+..++....+++|+.|+++.+...
T Consensus 167 ----------~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 167 ----------DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ----------CCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred ----------Cchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence 2222 8899999999999999888876688999999999877643
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.3e-15 Score=140.39 Aligned_cols=146 Identities=27% Similarity=0.431 Sum_probs=80.4
Q ss_pred EEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEeccCC
Q 036269 40 GISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLHDC 118 (623)
Q Consensus 40 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~ 118 (623)
.++.+++.++.+|... .++|+.|++++|.+..++..+|.++++|++|++++|.+ ..+|. .+..+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL---QSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc---CccChhhcCCCCCcCEEECCCC
Confidence 3445555555555433 23566666666666555555555666666666666655 33333 2455666666666666
Q ss_pred cCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 119 QHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
. +..+ ..+.++++|++|++++|.++.+|.. +.++++|++|++++ +.++.++...+..+++|+.|++++|.+
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 87 Q-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred c-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe
Confidence 5 5444 2345566666666666666555432 45566666666666 344445544455566666666665544
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.7e-16 Score=156.82 Aligned_cols=197 Identities=16% Similarity=0.131 Sum_probs=132.1
Q ss_pred CCCcEEEcccCCcccccccC-CC--CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC-CchhhhccccCc
Q 036269 36 EDLTGISLMFNDIHEVHEGL-QC--PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS-LPSSLSFLINLR 111 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~-lp~~~~~l~~L~ 111 (623)
..+++++++++.+. +... .+ ++++.|++++|.+...+..+ ..+++|++|++++|.+. .. +|..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~--~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE--VSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEEC--HHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcC--HHHHHHHHhhCCCCC
Confidence 34677888877664 2222 33 67888888888777444443 56788888888888774 33 666777888888
Q ss_pred EEeccCCcCCCCc--ccccCCcCCcEEEcCCC-CCc--cccccccCCCccCEEeccCCCCCCc--Cchhhhhccc-cCcE
Q 036269 112 TLSLHDCQHFGDL--SLIGELSLLEILDLSES-DVS--EIPVSFGRLGHLRLLDLTDCYNLEL--IPRGVLSRLR-KLEE 183 (623)
Q Consensus 112 ~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~L~~L~l~~~~~~~~--l~~~~~~~l~-~L~~ 183 (623)
+|++++|. +.+. ..++.+++|++|++++| .++ .++..+.++++|++|++++|..++. ++. .+..++ +|++
T Consensus 122 ~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~ 199 (336)
T 2ast_B 122 NLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQ 199 (336)
T ss_dssp EEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCE
T ss_pred EEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCE
Confidence 88888887 6432 56777888888888888 566 3666677788888888888634543 343 367778 8888
Q ss_pred EEecccccccccccccccccccccccccCCCCccEEEeecCC-Cc-cCCCc-ccccCccEEEEEeCC
Q 036269 184 LYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE-GE-IMPSD-MSFQNLTSFSITIGG 247 (623)
Q Consensus 184 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~~-~~~~~L~~L~l~~~~ 247 (623)
|++++|..... ....+..++.+++|+.|++++|. +. ..+.. ..+++|+.|+++++.
T Consensus 200 L~l~~~~~~~~--------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 200 LNLSGYRKNLQ--------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp EECCSCGGGSC--------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred EEeCCCcccCC--------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 88888742100 12334455677888888888877 33 22223 666778888877664
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=2.9e-15 Score=139.93 Aligned_cols=148 Identities=27% Similarity=0.377 Sum_probs=123.1
Q ss_pred CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEecc
Q 036269 38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLH 116 (623)
Q Consensus 38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~ 116 (623)
.+.++.+++.++.+|.... ++|+.|++++|.+..+++..|.++++|++|++++|.+ ..+|. .+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l---~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL---GALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC---CCcChhhcccCCCcCEEECC
Confidence 4568888888888887654 7899999999999877666678999999999999998 66664 46789999999999
Q ss_pred CCcCCCCc--ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
+|. +..+ ..+..+++|++|++++|.++.+|..+.++++|++|++++ +.+..++...+..+++|+.|++.+|.+
T Consensus 97 ~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 97 TNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCc-CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 998 8776 347888999999999999999988888999999999998 567777766678888888888888866
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=2.2e-15 Score=137.35 Aligned_cols=150 Identities=20% Similarity=0.247 Sum_probs=112.2
Q ss_pred CCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcE
Q 036269 33 NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT 112 (623)
Q Consensus 33 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~ 112 (623)
..+++++.|++++|.++.++....+++|++|++++|.+..++. +..+++|++|++++|.+. ...|..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT--SDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCB--GGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccC--cccChhhcCCCCCCE
Confidence 4556788888888888877744477888888888887666543 578888888888888874 446667778888888
Q ss_pred EeccCCcCCCC--cccccCCcCCcEEEcCCCC-CccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccc
Q 036269 113 LSLHDCQHFGD--LSLIGELSLLEILDLSESD-VSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT 189 (623)
Q Consensus 113 L~l~~~~~l~~--i~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~ 189 (623)
|++++|. +.+ +..++.+++|++|++++|. ++.+| .+..+++|++|++++ +.+..++. +..+++|++|++++|
T Consensus 117 L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC
T ss_pred EEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCc
Confidence 8888887 755 3667788888888888887 77776 677888888888888 45556662 778888888888887
Q ss_pred cc
Q 036269 190 FC 191 (623)
Q Consensus 190 ~~ 191 (623)
.+
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 65
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.8e-15 Score=138.02 Aligned_cols=168 Identities=22% Similarity=0.287 Sum_probs=138.1
Q ss_pred CCCCCCCCCCCCCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC
Q 036269 23 GVELKDWPSINTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL 100 (623)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l 100 (623)
+.++..+| ....++++.|++++|.++.++... .+++|++|++++|.+..++..+|.++++|++|++++|.+ ..+
T Consensus 16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~ 91 (208)
T 2o6s_A 16 SQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL---QSL 91 (208)
T ss_dssp SSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCC
T ss_pred CCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC---Ccc
Confidence 34566666 345678999999999999888754 899999999999999988888889999999999999999 556
Q ss_pred ch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhh
Q 036269 101 PS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLS 176 (623)
Q Consensus 101 p~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~ 176 (623)
|. .+..+++|++|++++|. +..+ ..+..+++|++|++++|.++.+|.. +.++++|++|++++|.. .+
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~ 162 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DC 162 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CC
T ss_pred CHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ec
Confidence 55 47899999999999998 8776 4578999999999999999988754 78999999999999633 34
Q ss_pred ccccCcEEEecccccccccccccccccccccccccCCC
Q 036269 177 RLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALS 214 (623)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 214 (623)
.+++|+.|+++.|.+. ..++..++.++
T Consensus 163 ~~~~l~~L~~~~n~~~-----------g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHS-----------GVVRNSAGSVA 189 (208)
T ss_dssp CTTTTHHHHHHHHHCT-----------TTBBCTTSSBC
T ss_pred CCCCHHHHHHHHHhCC-----------ceeeccCcccc
Confidence 5567888888888773 45555565554
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=2.8e-15 Score=139.06 Aligned_cols=148 Identities=24% Similarity=0.341 Sum_probs=109.5
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC 118 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~ 118 (623)
+.++.+++.++.+|.... ++++.|++++|.+..++...|..+++|++|++++|.+. ...|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC--EECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC--CcCHHHhhCCcCCCEEECCCC
Confidence 467777777877776553 57888888888888776666788888888888888874 334667778888888888888
Q ss_pred cCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 119 QHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
. +..+ ..+.++++|++|++++|.++.+ |..+..+++|++|++++ +.++.++.+.+..+++|+.|++++|.+
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred c-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 7 7666 3467788888888888887765 45677788888888887 456666655567777777777777755
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=4.8e-16 Score=158.06 Aligned_cols=204 Identities=16% Similarity=0.107 Sum_probs=131.4
Q ss_pred CCCCCCcEEEcccCCccc-----ccccC-CCCCcceEEccCCCCCC----CChhh------HhCCCcccEEEccCCcccc
Q 036269 33 NTFEDLTGISLMFNDIHE-----VHEGL-QCPRLQALFLQKNDLLD----IPDPF------FQGMKDLKVLDLGGSGVFS 96 (623)
Q Consensus 33 ~~~~~l~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~----l~~~~------~~~l~~Lr~L~l~~~~~~~ 96 (623)
..++++++|++++|.++. ++..+ .+++|++|++++|.+.. +|..+ +..+++|++|++++|.+.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~- 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG- 107 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC-
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC-
Confidence 345678888888887753 33333 67888888888875542 33332 367788888888888874
Q ss_pred cC----CCchhhhccccCcEEeccCCcCCCCc------ccccCC---------cCCcEEEcCCCCCc--ccc---ccccC
Q 036269 97 LF----SLPSSLSFLINLRTLSLHDCQHFGDL------SLIGEL---------SLLEILDLSESDVS--EIP---VSFGR 152 (623)
Q Consensus 97 ~~----~lp~~~~~l~~L~~L~l~~~~~l~~i------~~~~~l---------~~L~~L~l~~~~i~--~lp---~~i~~ 152 (623)
. .+|..+..+++|++|++++|. ++.. ..+..+ ++|++|++++|.++ .+| ..+..
T Consensus 108 -~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 108 -PTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp -TTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 3 266677788888888888887 6422 223333 78888888888775 444 45667
Q ss_pred CCccCEEeccCCCCCCc-----CchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCc
Q 036269 153 LGHLRLLDLTDCYNLEL-----IPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE 227 (623)
Q Consensus 153 l~~L~~L~l~~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 227 (623)
+++|++|++++| .++. +....+..+++|+.|++++|.+.... ...++..+..+++|+.|++++|.+.
T Consensus 186 ~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 186 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------SSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------HHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred CCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------HHHHHHHHccCCCcCEEECCCCCCc
Confidence 788888888885 3331 22212667788888888887762100 1234556677788888888887754
Q ss_pred cC-----CCc---ccccCccEEEEEeCC
Q 036269 228 IM-----PSD---MSFQNLTSFSITIGG 247 (623)
Q Consensus 228 ~~-----~~~---~~~~~L~~L~l~~~~ 247 (623)
.. +.. ..+++|+.|++++|.
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 33 222 125667777766554
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=3.1e-15 Score=142.84 Aligned_cols=157 Identities=20% Similarity=0.267 Sum_probs=136.7
Q ss_pred CCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh
Q 036269 24 VELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS 103 (623)
Q Consensus 24 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~ 103 (623)
..+.+++....+++++.|++++|.++.++....+++|+.|++++|.+..+++ +.++++|++|++++|.+ ..+|..
T Consensus 29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l---~~l~~~ 103 (263)
T 1xeu_A 29 QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL---KNLNGI 103 (263)
T ss_dssp SCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC---SCCTTC
T ss_pred CCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc---CCcCcc
Confidence 4455566667789999999999999999855589999999999999998887 69999999999999999 566653
Q ss_pred hhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcE
Q 036269 104 LSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEE 183 (623)
Q Consensus 104 ~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~ 183 (623)
. . ++|++|++++|. ++.++.++.+++|++|++++|.++.++ .+..+++|++|++++ +.+..++ .+..+++|+.
T Consensus 104 ~-~-~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~--~l~~l~~L~~ 176 (263)
T 1xeu_A 104 P-S-ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTG--GLTRLKKVNW 176 (263)
T ss_dssp C-C-SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCT--TSTTCCCCCE
T ss_pred c-c-CcccEEEccCCc-cCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchH--HhccCCCCCE
Confidence 3 3 999999999998 988888999999999999999999887 789999999999999 4566663 3899999999
Q ss_pred EEecccccc
Q 036269 184 LYMSKTFCH 192 (623)
Q Consensus 184 L~l~~~~~~ 192 (623)
|++++|.+.
T Consensus 177 L~l~~N~~~ 185 (263)
T 1xeu_A 177 IDLTGQKCV 185 (263)
T ss_dssp EEEEEEEEE
T ss_pred EeCCCCccc
Confidence 999999873
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=1.7e-15 Score=152.32 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=132.4
Q ss_pred CCCcEEEcccCCcccccc-----cC-CCC-CcceEEccCCCCCCCChhhHhCC-----CcccEEEccCCcccccCCCchh
Q 036269 36 EDLTGISLMFNDIHEVHE-----GL-QCP-RLQALFLQKNDLLDIPDPFFQGM-----KDLKVLDLGGSGVFSLFSLPSS 103 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~~~~~~l~~~~~~~l-----~~Lr~L~l~~~~~~~~~~lp~~ 103 (623)
+++++|++++|.++..+. .+ .++ +|+.|++++|.+.......+..+ ++|++|++++|.++ +..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~--~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS--YKSSDE 99 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG--GSCHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC--hHHHHH
Confidence 558888888888876653 23 566 78888888888875544444553 88888888888884 344443
Q ss_pred hh----cc-ccCcEEeccCCcCCCCc--c----cccC-CcCCcEEEcCCCCCc-----cccccccCCC-ccCEEeccCCC
Q 036269 104 LS----FL-INLRTLSLHDCQHFGDL--S----LIGE-LSLLEILDLSESDVS-----EIPVSFGRLG-HLRLLDLTDCY 165 (623)
Q Consensus 104 ~~----~l-~~L~~L~l~~~~~l~~i--~----~~~~-l~~L~~L~l~~~~i~-----~lp~~i~~l~-~L~~L~l~~~~ 165 (623)
+. .+ ++|++|++++|. +++. . .+.. ..+|++|++++|.++ .++..+..++ +|++|++++|
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n- 177 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN- 177 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-
T ss_pred HHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-
Confidence 33 33 788888888888 7544 2 2334 358888888888877 4455556665 8888888885
Q ss_pred CCCcCchhhh----hcc-ccCcEEEecccccccccccccccccccccccccC-CCCccEEEeecCCCccCCCc------c
Q 036269 166 NLELIPRGVL----SRL-RKLEELYMSKTFCHWQFENEDDSRSNAKFIELGA-LSRLTSLHIDIPEGEIMPSD------M 233 (623)
Q Consensus 166 ~~~~l~~~~~----~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~------~ 233 (623)
.++......+ ... ++|++|++++|.+.... ...++..+.. .++|+.|++++|.+...+.. .
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~ 250 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKS-------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD 250 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence 4443432213 334 58888888888773211 1123444544 35888888888887655431 4
Q ss_pred cccCccEEEEEeCC
Q 036269 234 SFQNLTSFSITIGG 247 (623)
Q Consensus 234 ~~~~L~~L~l~~~~ 247 (623)
.+++|+.|+++++.
T Consensus 251 ~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 251 SLKHLQTVYLDYDI 264 (362)
T ss_dssp TTTTCSEEEEEHHH
T ss_pred cCCCccEEEeccCC
Confidence 56778888887765
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=6.5e-16 Score=155.41 Aligned_cols=174 Identities=18% Similarity=0.195 Sum_probs=107.2
Q ss_pred EEcccCCccc-ccccCCC-CCcceEEccCCCCCCCCh----hhHhCCC-cccEEEccCCcccccCCCchhhhcc-----c
Q 036269 41 ISLMFNDIHE-VHEGLQC-PRLQALFLQKNDLLDIPD----PFFQGMK-DLKVLDLGGSGVFSLFSLPSSLSFL-----I 108 (623)
Q Consensus 41 L~l~~~~~~~-l~~~~~~-~~L~~L~l~~~~~~~l~~----~~~~~l~-~Lr~L~l~~~~~~~~~~lp~~~~~l-----~ 108 (623)
..++.+.++. +|..... ++|+.|++++|.+...+. ..|.+++ +|++|++++|.+. +..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~--~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--FKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG--GSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC--HHHHHHHHHHHhccCC
Confidence 4566677664 3444433 448888888888886665 5567788 8888888888885 4445556554 8
Q ss_pred cCcEEeccCCcCCCCc--c----cccCC-cCCcEEEcCCCCCccccc-----cccC-CCccCEEeccCCCCCCcC-----
Q 036269 109 NLRTLSLHDCQHFGDL--S----LIGEL-SLLEILDLSESDVSEIPV-----SFGR-LGHLRLLDLTDCYNLELI----- 170 (623)
Q Consensus 109 ~L~~L~l~~~~~l~~i--~----~~~~l-~~L~~L~l~~~~i~~lp~-----~i~~-l~~L~~L~l~~~~~~~~l----- 170 (623)
+|++|++++|. +++. . .+..+ ++|++|++++|.++..+. .+.. .++|++|++++| .++..
T Consensus 81 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l 158 (362)
T 3goz_A 81 NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDEL 158 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHH
T ss_pred CccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHH
Confidence 88888888887 6443 2 24444 788888888888774432 2334 257888888874 33322
Q ss_pred chhhhhccc-cCcEEEecccccccccccccccccccccccccCC-CCccEEEeecCCC
Q 036269 171 PRGVLSRLR-KLEELYMSKTFCHWQFENEDDSRSNAKFIELGAL-SRLTSLHIDIPEG 226 (623)
Q Consensus 171 ~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 226 (623)
+.. +..++ +|++|++++|.+.... ...+...+... ++|+.|++++|.+
T Consensus 159 ~~~-l~~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 159 IQI-LAAIPANVNSLNLRGNNLASKN-------CAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHH-HHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHH-HhcCCccccEeeecCCCCchhh-------HHHHHHHHHhCCCCCCEEECCCCCC
Confidence 221 33444 7777777777663111 01112233444 4677777766654
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=4e-15 Score=148.87 Aligned_cols=224 Identities=10% Similarity=0.110 Sum_probs=128.3
Q ss_pred ccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceecccc
Q 036269 348 KLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKE 427 (623)
Q Consensus 348 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~ 427 (623)
++++|+++++. ++.+..+. .+.+++|+.|++++|...+ .++...+.+++++.++.+.++++++++. +.
T Consensus 31 ~l~~L~Ls~N~-i~~i~~~~--f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l~~l~--------~~ 98 (350)
T 4ay9_X 31 NAIELRFVLTK-LRVIQKGA--FSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYIN--------PE 98 (350)
T ss_dssp TCSEEEEESCC-CSEECTTS--STTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTCCEEC--------TT
T ss_pred CCCEEEccCCc-CCCcCHHH--HcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcccccC--------ch
Confidence 45555555543 33221111 1245556666666543222 2343334455555555555556665553 33
Q ss_pred ccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcc-cchhhhhhcccccccceeccc
Q 036269 428 ETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKA-AAEEMVLYRNRRDQIHIHATT 506 (623)
Q Consensus 428 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~-~L~~l~~~~~~~~~l~~~~~~ 506 (623)
.+..+++|++|+++++ .++.+.. ........+..+++.++.++..+++..+.... .++.|++.+|+..
T Consensus 99 ~f~~l~~L~~L~l~~n-~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-------- 167 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNT-GIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-------- 167 (350)
T ss_dssp SBCCCTTCCEEEEEEE-CCSSCCC--CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--------
T ss_pred hhhhcccccccccccc-ccccCCc--hhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--------
Confidence 4455666666666665 3443311 11223445566666666666666555555433 4556666665441
Q ss_pred cCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceec
Q 036269 507 STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQL 586 (623)
Q Consensus 507 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 586 (623)
..+.+.....+|++|.+.+++.++.+++ ..+..+++|++|+++++. |++++ ...+..|++|.+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~-l~~lp---------------~~~~~~L~~L~~ 230 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IHSLP---------------SYGLENLKKLRA 230 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC-CCCCC---------------SSSCTTCCEEEC
T ss_pred CCChhhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC-cCccC---------------hhhhccchHhhh
Confidence 1223333456788888888888888754 456788888888888886 77774 345677888888
Q ss_pred ccCcccceecCCCCcceeecCCccEEEecc
Q 036269 587 CLLDSLTCFCSSGSHATVEFLALEALQIID 616 (623)
Q Consensus 587 ~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~ 616 (623)
.++.+++.++. ...+++|+.+++.+
T Consensus 231 l~~~~l~~lP~-----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 231 RSTYNLKKLPT-----LEKLVALMEASLTY 255 (350)
T ss_dssp TTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred ccCCCcCcCCC-----chhCcChhhCcCCC
Confidence 88888888775 33367888887743
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=1e-14 Score=153.40 Aligned_cols=176 Identities=19% Similarity=0.287 Sum_probs=142.4
Q ss_pred CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269 37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116 (623)
Q Consensus 37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~ 116 (623)
+++.|++++|.++.+|..+ .++|+.|++++|.+..+| ..+++|++|++++|.+ ..+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l---~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRL---STLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCC---SCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCC---CCcch-hhc--CCCEEECC
Confidence 7899999999998888765 378999999999999888 3478999999999998 56777 544 99999999
Q ss_pred CCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccc
Q 036269 117 DCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFE 196 (623)
Q Consensus 117 ~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~ 196 (623)
+|. ++.++. .+++|++|++++|.++.+|. .+++|++|++++ +.++.+|. +. ++|+.|++++|.+.
T Consensus 129 ~N~-l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~---- 193 (571)
T 3cvr_A 129 NNQ-LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLE---- 193 (571)
T ss_dssp SSC-CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCS----
T ss_pred CCc-CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCC----
Confidence 998 877755 78899999999999998886 678999999999 45666886 44 89999999999873
Q ss_pred cccccccccccccccCCCCc-------cEEEeecCCCccCCCc-ccccCccEEEEEeCCCC
Q 036269 197 NEDDSRSNAKFIELGALSRL-------TSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPE 249 (623)
Q Consensus 197 ~~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 249 (623)
.++. +.. +| +.|++++|.+..+|.. ..+++|+.|++++|...
T Consensus 194 --------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 194 --------SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp --------SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred --------chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 3333 333 56 9999999998888886 66888988888877643
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=8.6e-15 Score=135.73 Aligned_cols=147 Identities=16% Similarity=0.269 Sum_probs=107.4
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCC-ChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEecc
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDI-PDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLH 116 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~ 116 (623)
+.++++++.++.+|... ...++.|++++|.+..+ +..+|.++++|++|++++|.+ ..++ ..+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI---TDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC---CEECHHHhCCCCCCCEEECC
Confidence 47788888888887654 24567888888888755 344567888888888888887 4444 467788888888888
Q ss_pred CCcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 117 DCQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
+|. +..+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|+.|++++|.+
T Consensus 90 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 90 SNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 887 7665 4577788888888888888765 56677788888888887 455555444477777777777777765
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=9.5e-15 Score=146.71 Aligned_cols=147 Identities=22% Similarity=0.263 Sum_probs=88.4
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHh-CCCcccEEEccCCcccccCCCc-hhhhccccCcEEecc
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQ-GMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLH 116 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~-~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~ 116 (623)
+.++.+++.++.+|..+. +.++.|++++|.+..++..+|. ++++|++|++++|.+ ..++ ..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL---NFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC---CccChhhccCCCCCCEEECC
Confidence 456666666666665431 3466666666666655555555 666666666666666 3333 346666666666666
Q ss_pred CCcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhh---hccccCcEEEecccc
Q 036269 117 DCQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVL---SRLRKLEELYMSKTF 190 (623)
Q Consensus 117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~---~~l~~L~~L~l~~~~ 190 (623)
+|. +..+ ..+..+++|++|++++|.+..+ |..+..+++|++|++++ +.+..+|..++ ..+++|+.|++++|.
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 666 6554 3456666666666666666644 44566666666666666 45555665534 456666666666665
Q ss_pred c
Q 036269 191 C 191 (623)
Q Consensus 191 ~ 191 (623)
+
T Consensus 175 l 175 (361)
T 2xot_A 175 L 175 (361)
T ss_dssp C
T ss_pred C
Confidence 5
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=6.5e-15 Score=147.93 Aligned_cols=163 Identities=25% Similarity=0.329 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCCCCCCcEEEcccCCcccccccC---CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269 23 GVELKDWPSINTFEDLTGISLMFNDIHEVHEGL---QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS 99 (623)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~ 99 (623)
+..+..+|. .....++.|++++|.++.++... .+++|+.|++++|.+..++...|.++++|++|++++|.+ ..
T Consensus 27 ~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l---~~ 102 (361)
T 2xot_A 27 KQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL---HT 102 (361)
T ss_dssp SSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---CE
T ss_pred CCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC---Cc
Confidence 344555553 33455667777777766665532 566677777777776665555556677777777777766 33
Q ss_pred Cc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccccccc----cCCCccCEEeccCCCCCCcCch
Q 036269 100 LP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVSF----GRLGHLRLLDLTDCYNLELIPR 172 (623)
Q Consensus 100 lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~i----~~l~~L~~L~l~~~~~~~~l~~ 172 (623)
++ ..+..+++|++|++++|. +..+ ..+..+++|++|++++|.++.+|..+ ..+++|++|++++ +.+..+|.
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~ 180 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPL 180 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCH
T ss_pred CCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCH
Confidence 33 345666777777777766 6554 45666677777777777776666543 4566777777776 45556665
Q ss_pred hhhhcccc--CcEEEeccccc
Q 036269 173 GVLSRLRK--LEELYMSKTFC 191 (623)
Q Consensus 173 ~~~~~l~~--L~~L~l~~~~~ 191 (623)
..+..++. ++.|++.+|.+
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCE
T ss_pred HHhhhccHhhcceEEecCCCc
Confidence 44555554 35566666544
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=7.6e-14 Score=146.84 Aligned_cols=175 Identities=18% Similarity=0.171 Sum_probs=145.2
Q ss_pred eeeecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCccccc
Q 036269 18 FLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97 (623)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~ 97 (623)
.....++.+..+|. ..+++++.|++++|.++.+| ..+++|+.|++++|.+..+|. + .+ +|++|++++|.+
T Consensus 63 ~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l-~~--~L~~L~Ls~N~l--- 132 (571)
T 3cvr_A 63 ELQLNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-L-PA--SLKHLDVDNNQL--- 132 (571)
T ss_dssp EEECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-C-CT--TCCEEECCSSCC---
T ss_pred EEEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-h-hc--CCCEEECCCCcC---
Confidence 34444566777774 23588999999999999998 457899999999999998887 3 44 999999999999
Q ss_pred CCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhc
Q 036269 98 FSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSR 177 (623)
Q Consensus 98 ~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~ 177 (623)
..+|. .+++|++|++++|. ++.++. .+++|++|++++|.++.+|. +. ++|++|++++ +.++.+|. +..
T Consensus 133 ~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~ 200 (571)
T 3cvr_A 133 TMLPE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV 200 (571)
T ss_dssp SCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC-
T ss_pred CCCCC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH
Confidence 56877 68999999999999 877754 67899999999999999998 66 9999999999 56778886 333
Q ss_pred cccC-------cEEEecccccccccccccccccccccccccCCCCccEEEeecCCCcc
Q 036269 178 LRKL-------EELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEI 228 (623)
Q Consensus 178 l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (623)
+| +.|++++|.+ ..++..+..+++|+.|++++|.+..
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l------------~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRI------------THIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ---------CCEEEECCSSCC------------CCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred --hhhcccccceEEecCCCcc------------eecCHHHhcCCCCCEEEeeCCcCCC
Confidence 66 9999999988 3567778889999999999998643
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=6.1e-15 Score=149.88 Aligned_cols=204 Identities=19% Similarity=0.195 Sum_probs=153.2
Q ss_pred CCCCCCCcEEEcccCCcccc----ccc--------CCCCCcceEEccCCCCCC-----CChhhHhCCCcccEEEccCCcc
Q 036269 32 INTFEDLTGISLMFNDIHEV----HEG--------LQCPRLQALFLQKNDLLD-----IPDPFFQGMKDLKVLDLGGSGV 94 (623)
Q Consensus 32 ~~~~~~l~~L~l~~~~~~~l----~~~--------~~~~~L~~L~l~~~~~~~-----l~~~~~~~l~~Lr~L~l~~~~~ 94 (623)
+..+++|++|++++|.+..+ |.. ..+++|++|++++|.+.. ++. .+..+++|++|++++|.+
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCC
Confidence 34578999999999865533 322 267999999999999885 333 458999999999999998
Q ss_pred cccCC----Cchhhhcc---------ccCcEEeccCCcCCC--Cc----ccccCCcCCcEEEcCCCCCc------ccccc
Q 036269 95 FSLFS----LPSSLSFL---------INLRTLSLHDCQHFG--DL----SLIGELSLLEILDLSESDVS------EIPVS 149 (623)
Q Consensus 95 ~~~~~----lp~~~~~l---------~~L~~L~l~~~~~l~--~i----~~~~~l~~L~~L~l~~~~i~------~lp~~ 149 (623)
. .. ++..+..+ ++|++|++++|. ++ .+ ..+..+++|++|++++|.++ -.|..
T Consensus 135 ~--~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~ 211 (386)
T 2ca6_A 135 G--PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211 (386)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT
T ss_pred C--HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH
Confidence 4 22 33334445 899999999998 75 23 35678899999999999988 23448
Q ss_pred ccCCCccCEEeccCCCCC----CcCchhhhhccccCcEEEecccccccccccccccccccccccc--cCCCCccEEEeec
Q 036269 150 FGRLGHLRLLDLTDCYNL----ELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIEL--GALSRLTSLHIDI 223 (623)
Q Consensus 150 i~~l~~L~~L~l~~~~~~----~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~ 223 (623)
+.++++|++|++++|... ..+|.. +..+++|++|++++|.+.... ...++..+ +.+++|+.|++++
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~~-------~~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCLLSARG-------AAAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHHH-------HHHHHHHHHTCSSCCCCEEECCS
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCCCchhh-------HHHHHHHHhhccCCCeEEEECcC
Confidence 889999999999996532 456664 789999999999999873210 01234555 4489999999999
Q ss_pred CCCcc-----CCCc--ccccCccEEEEEeCC
Q 036269 224 PEGEI-----MPSD--MSFQNLTSFSITIGG 247 (623)
Q Consensus 224 ~~~~~-----~~~~--~~~~~L~~L~l~~~~ 247 (623)
|.+.. ++.. ..+++|+.|++++|.
T Consensus 284 n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 99766 5554 446888888877665
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.8e-13 Score=127.63 Aligned_cols=143 Identities=25% Similarity=0.289 Sum_probs=122.8
Q ss_pred cCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS 99 (623)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~ 99 (623)
.+..+..+|. ...++++.|++++|.++.+++ .+ .+++|+.|++++|.+..++..+|..+++|++|++++|.+ ..
T Consensus 27 ~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l---~~ 102 (229)
T 3e6j_A 27 RSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL---TV 102 (229)
T ss_dssp TTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CC
T ss_pred cCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC---Cc
Confidence 3466777774 455899999999999998854 34 899999999999999999888889999999999999999 56
Q ss_pred Cch-hhhccccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCc
Q 036269 100 LPS-SLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLEL 169 (623)
Q Consensus 100 lp~-~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~ 169 (623)
+|. .+..+++|++|++++|. +..+ ..+..+++|++|++++|.++.+| ..+..+++|+.|++++|.....
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 654 46899999999999999 8887 67899999999999999999887 4588999999999999654433
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=8.4e-14 Score=129.01 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=116.1
Q ss_pred ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC-c-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEE
Q 036269 61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-P-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEIL 136 (623)
Q Consensus 61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L 136 (623)
+.+++++|.+..+|..+ .+.+++|++++|.+ ..+ + ..+..+++|++|++++|. +..+ ..+.++++|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l---~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEF---TVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCC---CEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCCCcC---CccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEE
Confidence 58899999988888754 45678999999998 454 3 347889999999999998 8776 468889999999
Q ss_pred EcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCC
Q 036269 137 DLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSR 215 (623)
Q Consensus 137 ~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 215 (623)
++++|.++.+|. .+..+++|++|++++ +.+..+++..+..+++|++|++++|.+. ...+..++.+++
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~ 154 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHS 154 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTT
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCC
Confidence 999999987764 488899999999998 4566665445888899999999888773 333566778888
Q ss_pred ccEEEeecCCC
Q 036269 216 LTSLHIDIPEG 226 (623)
Q Consensus 216 L~~L~l~~~~~ 226 (623)
|+.|++++|.+
T Consensus 155 L~~L~L~~N~l 165 (220)
T 2v70_A 155 LSTLNLLANPF 165 (220)
T ss_dssp CCEEECCSCCE
T ss_pred CCEEEecCcCC
Confidence 88888888764
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=7.1e-14 Score=129.51 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=113.4
Q ss_pred ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEE
Q 036269 61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILD 137 (623)
Q Consensus 61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~ 137 (623)
+.++++++.+..+|..+ .+.+++|++++|.+ ..++. .+..+++|++|++++|. +..+ ..+.++++|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i---~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTI---KVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCC---CEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEE
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcC---CCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEE
Confidence 57888888888888754 37889999999988 55554 67888899999999988 7666 5788888899999
Q ss_pred cCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCc
Q 036269 138 LSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRL 216 (623)
Q Consensus 138 l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 216 (623)
+++|.++.+|.. +..+++|++|++++ +.+..++...+..+++|+.|++++|.+. ...+..+..+++|
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L 154 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQ-----------TIAKGTFSPLRAI 154 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTC
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCC-----------EECHHHHhCCCCC
Confidence 999988888754 57888888998888 5566666555788888888888888773 2223346677788
Q ss_pred cEEEeecCCC
Q 036269 217 TSLHIDIPEG 226 (623)
Q Consensus 217 ~~L~l~~~~~ 226 (623)
+.|++++|.+
T Consensus 155 ~~L~L~~N~~ 164 (220)
T 2v9t_B 155 QTMHLAQNPF 164 (220)
T ss_dssp CEEECCSSCE
T ss_pred CEEEeCCCCc
Confidence 8888877764
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=3.5e-16 Score=165.60 Aligned_cols=191 Identities=23% Similarity=0.244 Sum_probs=131.0
Q ss_pred CCCCCcEEEcccCCcccccccC-CCCCcceEEccCCC-------------CCCCChhhHhCCCcccEEE-ccCCcccccC
Q 036269 34 TFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKND-------------LLDIPDPFFQGMKDLKVLD-LGGSGVFSLF 98 (623)
Q Consensus 34 ~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~l~~~~~~~l~~Lr~L~-l~~~~~~~~~ 98 (623)
..+.++.|+++.|.++.+|..+ .+++|+.|++++|. ....++..+..+++|+.|+ ++.+.+ .
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~---~ 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL---D 423 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---H
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---c
Confidence 3466777888888877777776 77777777775553 2223333456777777777 555443 2
Q ss_pred CCch------hhhc--cccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcC
Q 036269 99 SLPS------SLSF--LINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELI 170 (623)
Q Consensus 99 ~lp~------~~~~--l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l 170 (623)
.++. .+.. ...|++|++++|. ++.++.++.+++|++|++++|.++.+|..++.+++|++|++++ +.++.+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~l 501 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCC
Confidence 2221 1111 1257888888887 7777558888888888888888888888888888888888888 456667
Q ss_pred chhhhhccccCcEEEecccccccccccccccccccc-cccccCCCCccEEEeecCCCccCCCc-----ccccCccEEE
Q 036269 171 PRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAK-FIELGALSRLTSLHIDIPEGEIMPSD-----MSFQNLTSFS 242 (623)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~~L~ 242 (623)
| . ++.+++|+.|++++|.+. ... +..++.+++|+.|++++|.+...++. ..+++|+.|+
T Consensus 502 p-~-l~~l~~L~~L~Ls~N~l~-----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 D-G-VANLPRLQELLLCNNRLQ-----------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G-G-GTTCSSCCEEECCSSCCC-----------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred c-c-cCCCCCCcEEECCCCCCC-----------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 7 3 788888888888888772 222 66778888888888888887666553 3356666664
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=7.6e-14 Score=123.55 Aligned_cols=131 Identities=23% Similarity=0.249 Sum_probs=104.5
Q ss_pred CCCcEEEcccCCcc--cccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcE
Q 036269 36 EDLTGISLMFNDIH--EVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT 112 (623)
Q Consensus 36 ~~l~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~ 112 (623)
++++.|++++|.++ .+|..+ .+++|+.|++++|.+..+ ..+..+++|++|++++|.+. ..+|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF--GGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC--SCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc--hHHHHHHhhCCCCCE
Confidence 77999999999887 788775 788999999999988876 23688999999999999884 337777777899999
Q ss_pred EeccCCcCCCCc---ccccCCcCCcEEEcCCCCCccccc----cccCCCccCEEeccCCCCCCcCch
Q 036269 113 LSLHDCQHFGDL---SLIGELSLLEILDLSESDVSEIPV----SFGRLGHLRLLDLTDCYNLELIPR 172 (623)
Q Consensus 113 L~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~~~~~~~~l~~ 172 (623)
|++++|. +..+ ..+..+++|++|++++|.++.+|. .+..+++|++|++++| ....+|.
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 9999987 7664 567788888888888888887775 6778888888888874 4445553
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=1.2e-13 Score=119.48 Aligned_cols=122 Identities=24% Similarity=0.214 Sum_probs=98.3
Q ss_pred CCCcEEEcccCCcc--cccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcE
Q 036269 36 EDLTGISLMFNDIH--EVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT 112 (623)
Q Consensus 36 ~~l~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~ 112 (623)
++++.|++++|.++ .+|..+ .+++|+.|++++|.+..+ ..+.++++|++|++++|.+. +.+|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS--GGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC--SCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc--chHHHHhhhCCCCCE
Confidence 77899999999887 788765 788999999999988876 23688999999999999884 337777777889999
Q ss_pred EeccCCcCCCCc---ccccCCcCCcEEEcCCCCCccccc----cccCCCccCEEecc
Q 036269 113 LSLHDCQHFGDL---SLIGELSLLEILDLSESDVSEIPV----SFGRLGHLRLLDLT 162 (623)
Q Consensus 113 L~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~ 162 (623)
|++++|. ++++ ..++.+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999888 7664 567788888888888888877664 57777888887765
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=1.3e-13 Score=122.03 Aligned_cols=134 Identities=22% Similarity=0.182 Sum_probs=68.2
Q ss_pred CcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCcc-ccccccCCCccCEEe
Q 036269 82 KDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSE-IPVSFGRLGHLRLLD 160 (623)
Q Consensus 82 ~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~ 160 (623)
++|++|++++|.+.. +.+|..+..+++|++|++++|. +..+..+..+++|++|++++|.++. +|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 445555555555410 1444444555555555555555 5444445555555555555555554 444444555555555
Q ss_pred ccCCCCCCcCch-hhhhccccCcEEEeccccccccccccccccccccc----ccccCCCCccEEEeecCCCccCC
Q 036269 161 LTDCYNLELIPR-GVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKF----IELGALSRLTSLHIDIPEGEIMP 230 (623)
Q Consensus 161 l~~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~ 230 (623)
+++| .++.++. ..+..+++|++|++++|.+. ..+ ..++.+++|+.|++.+|....+|
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~------------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVT------------NLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGG------------TSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCc------------chHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 5553 3444431 22555555666666555542 111 24455566666666665554444
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=4e-13 Score=119.79 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=60.9
Q ss_pred CCCcEEEcccCCcccccccCCCC-CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh-hhccccCcEE
Q 036269 36 EDLTGISLMFNDIHEVHEGLQCP-RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS-LSFLINLRTL 113 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~-~~~l~~L~~L 113 (623)
.+++.|++++|.++.++....+. +|+.|++++|.+..++. |..+++|++|++++|.+ ..+|.. +..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRI---CRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCC---CEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccc--cccCCCCCEEECCCCcc---cccCcchhhcCCCCCEE
Confidence 45555555555555554433322 55555555555554421 35555555555555555 334432 2455555555
Q ss_pred eccCCcCCCCcc---cccCCcCCcEEEcCCCCCcccccc----ccCCCccCEEeccC
Q 036269 114 SLHDCQHFGDLS---LIGELSLLEILDLSESDVSEIPVS----FGRLGHLRLLDLTD 163 (623)
Q Consensus 114 ~l~~~~~l~~i~---~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~l~~ 163 (623)
++++|. ++.++ .+..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 555555 44431 344455555555555555444432 44444444444444
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=1.7e-12 Score=117.43 Aligned_cols=129 Identities=20% Similarity=0.248 Sum_probs=101.4
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChh-hHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDP-FFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~ 117 (623)
+.++++++.++.+|.... .+++.|++++|.+..++.. +|.++++|++|++++|.++ +..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT--GIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC--CcCHhHcCCcccCCEEECCC
Confidence 678888888888887652 3788999999988866653 4688999999999999884 44467788889999999999
Q ss_pred CcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCc
Q 036269 118 CQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIP 171 (623)
Q Consensus 118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~ 171 (623)
|. +..+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|......+
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred Cc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88 7666 4578888899999998888854 6778888888888888865444444
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=2.1e-13 Score=121.62 Aligned_cols=131 Identities=16% Similarity=0.153 Sum_probs=82.4
Q ss_pred cCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-cc-ccCCc
Q 036269 54 GLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SL-IGELS 131 (623)
Q Consensus 54 ~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~-~~~l~ 131 (623)
...+++|+.|++++|.+..++. +....++|++|++++|.+ ..+ ..+..+++|++|++++|. +..+ +. +..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l---~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEI---RKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCC---CEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCC---Ccc-cccccCCCCCEEECCCCc-ccccCcchhhcCC
Confidence 3356677777777777776643 222233777777777777 334 456667777777777776 6555 22 36677
Q ss_pred CCcEEEcCCCCCccccc--cccCCCccCEEeccCCCCCCcCchh---hhhccccCcEEEeccccc
Q 036269 132 LLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCYNLELIPRG---VLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 132 ~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~---~~~~l~~L~~L~l~~~~~ 191 (623)
+|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. ++..+++|+.|++++|..
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77777777777766665 5666777777777763 34445542 356666666666666544
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=2.4e-12 Score=116.37 Aligned_cols=120 Identities=23% Similarity=0.323 Sum_probs=62.3
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC 118 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~ 118 (623)
+.++++++.++.+|... .++++.|++++|.+..+|.. |.++++|++|++++|.++ ...+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRIS--TLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCC--EeCHhHccCCCCCCEEECCCC
Confidence 34555666665555443 13556666666665555532 355666666666666552 222234555555555555555
Q ss_pred cCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccC
Q 036269 119 QHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTD 163 (623)
Q Consensus 119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~ 163 (623)
. +..+ ..+.++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 5 5444 235555555555555555554443 244455555555554
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=4.8e-13 Score=115.70 Aligned_cols=122 Identities=23% Similarity=0.335 Sum_probs=72.6
Q ss_pred CCcceEEccCCCCC--CCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCC-c-ccccCCcCC
Q 036269 58 PRLQALFLQKNDLL--DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD-L-SLIGELSLL 133 (623)
Q Consensus 58 ~~L~~L~l~~~~~~--~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~-i-~~~~~l~~L 133 (623)
++++.|++++|.+. .+|.. +..+++|++|++++|.+ ..+ ..+..+++|++|++++|. +.. + ..++.+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l---~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGL---TSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCC---CCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCC---CCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCC
Confidence 55667777777665 45543 36666777777776666 333 445666666666666666 544 3 344456666
Q ss_pred cEEEcCCCCCcccc--ccccCCCccCEEeccCCCCCCcCch---hhhhccccCcEEEe
Q 036269 134 EILDLSESDVSEIP--VSFGRLGHLRLLDLTDCYNLELIPR---GVLSRLRKLEELYM 186 (623)
Q Consensus 134 ~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~l~~---~~~~~l~~L~~L~l 186 (623)
++|++++|.++.+| ..++.+++|++|++++| .+..++. ..+..+++|+.|++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 66666666666543 55666666666666663 3444443 33555666666554
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=1e-12 Score=143.62 Aligned_cols=150 Identities=22% Similarity=0.276 Sum_probs=88.4
Q ss_pred CCCcEEEcccCCcccccccC-CCCCcceEEc-----cCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhcccc
Q 036269 36 EDLTGISLMFNDIHEVHEGL-QCPRLQALFL-----QKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLIN 109 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l-----~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~ 109 (623)
++++.+++..+.++..+... ....|+.+.+ ..|.+. +++..|..++.|++|++++|.+ ..+|..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l---~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI---FNISANIFKYDF 248 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCC---SCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCC---CCCChhhcCCCC
Confidence 55778888887776655443 3333333333 223332 3445567888888888888888 677877778888
Q ss_pred CcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269 110 LRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188 (623)
Q Consensus 110 L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~ 188 (623)
|++|++++|. +..+ ..++++++|++|+|++|.++.+|..++++++|++|++++ +.++.+|.. ++++++|++|++++
T Consensus 249 L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTT
T ss_pred CCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCC
Confidence 8888888887 7766 567888888888888888888888888888888888888 456778876 78888888888888
Q ss_pred cccc
Q 036269 189 TFCH 192 (623)
Q Consensus 189 ~~~~ 192 (623)
|.+.
T Consensus 326 N~l~ 329 (727)
T 4b8c_D 326 NPLE 329 (727)
T ss_dssp SCCC
T ss_pred CccC
Confidence 8774
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=4.8e-12 Score=114.38 Aligned_cols=123 Identities=24% Similarity=0.356 Sum_probs=108.7
Q ss_pred ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEc
Q 036269 61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDL 138 (623)
Q Consensus 61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l 138 (623)
+.++++++.+..+|..+ .+.|++|++++|.+ ..+|..+..+++|++|++++|. +..+ ..+.++++|++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i---~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQF---TLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCC---CSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcC---chhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEEC
Confidence 67899999999888754 46899999999999 7888889999999999999999 8777 46899999999999
Q ss_pred CCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 139 SESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 139 ~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
++|.++.++ ..+..+++|++|++++ +.+..+|.+.+..+++|+.|++++|.+
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 999999776 4689999999999999 677788887788999999999999877
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=6.3e-12 Score=112.15 Aligned_cols=126 Identities=25% Similarity=0.328 Sum_probs=91.1
Q ss_pred CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEecc
Q 036269 38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLH 116 (623)
Q Consensus 38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~ 116 (623)
.+.++++++.++.+|... .++|+.|++++|.+..++...|.++++|++|++++|.+ ..+|. .+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI---QSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc---eEeChhHccCCCccCEEECC
Confidence 356777777777777544 36788888888888777776677888888888888887 45554 35778888888888
Q ss_pred CCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCC
Q 036269 117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLE 168 (623)
Q Consensus 117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~ 168 (623)
+|. ++.+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|....
T Consensus 85 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 887 7665 3467777888888888877777654 4667788888887754433
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=4.6e-13 Score=146.35 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=110.7
Q ss_pred CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCc
Q 036269 56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLE 134 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~ 134 (623)
.++.|+.|+|++|.+..++..++ ++++|++|+|++|.+ ..+|..+.++++|++|++++|. +..+ ..++++++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l---~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSL---TELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK 296 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCC---SCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS
T ss_pred cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcC---cccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC
Confidence 78999999999999999998874 899999999999999 7899999999999999999999 8877 6789999999
Q ss_pred EEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhcccc-CcEEEeccccc
Q 036269 135 ILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRK-LEELYMSKTFC 191 (623)
Q Consensus 135 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~-L~~L~l~~~~~ 191 (623)
+|+|++|.++.+|..++++++|++|++++|...+.+|.. +..+.. +..+++.+|.+
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcc
Confidence 999999999999999999999999999996554444543 544322 22356666665
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=3.7e-12 Score=115.19 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=86.5
Q ss_pred ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch--hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEE
Q 036269 61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS--SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEIL 136 (623)
Q Consensus 61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L 136 (623)
++++++++.+..+|..+ .+.+++|++++|.+ ..++. .+..+++|++|++++|. +..+ ..+.++++|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i---~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDNEL---GRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSCCC---CSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccCC---CCCCCEEECCCCcC---CccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEE
Confidence 67888888888777654 23788888888887 55554 37778888888888887 7655 467777888888
Q ss_pred EcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 137 DLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 137 ~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
++++|.++.++. .+..+++|++|++++| .+..+++..+..+++|++|++++|.+
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 888887776553 4677777777777773 44444333366677777777777655
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=3.1e-11 Score=107.57 Aligned_cols=124 Identities=26% Similarity=0.423 Sum_probs=96.9
Q ss_pred cceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEE
Q 036269 60 LQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEIL 136 (623)
Q Consensus 60 L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L 136 (623)
.+.++++++.+..+|..+ .++|++|++++|.+ ..+|. .+..+++|++|++++|. +..+ ..+..+++|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKL---QSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcc---cEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEE
Confidence 467888888888887643 47889999999988 45554 46788899999999888 7766 346788888999
Q ss_pred EcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 137 DLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 137 ~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
++++|.++.+|.. +..+++|++|++++ +.++.+|..++..+++|++|++++|.+
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence 9988888877654 67888888888888 466677776567788888888888766
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=2e-13 Score=124.31 Aligned_cols=143 Identities=22% Similarity=0.237 Sum_probs=94.3
Q ss_pred CCcEEEcccC--CcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269 37 DLTGISLMFN--DIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL 113 (623)
Q Consensus 37 ~l~~L~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L 113 (623)
.++...+.+. .++.+|..+ .+++|+.|++++|.+..+| . +.++++|++|++++|.+ ..+|..+..+++|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n~l---~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRNLI---KKIENLDAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEEEE---CSCSSHHHHHHHCSEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCCCc---ccccchhhcCCcCCEE
Confidence 3555555544 345555444 6777888888777777766 2 57778888888887777 5677766677778888
Q ss_pred eccCCcCCCCcccccCCcCCcEEEcCCCCCccccc--cccCCCccCEEeccCCCCCCcCc---------hhhhhccccCc
Q 036269 114 SLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCYNLELIP---------RGVLSRLRKLE 182 (623)
Q Consensus 114 ~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~l~---------~~~~~~l~~L~ 182 (623)
++++|. +..++.+..+++|++|++++|.++.+|. .+..+++|++|++++|......| ..++..+++|+
T Consensus 99 ~L~~N~-l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 99 WISYNQ-IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EEEEEE-CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred ECcCCc-CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 887777 7666666777777777777777776553 56777777777777743322212 12345566666
Q ss_pred EEE
Q 036269 183 ELY 185 (623)
Q Consensus 183 ~L~ 185 (623)
.|+
T Consensus 178 ~Ld 180 (198)
T 1ds9_A 178 KLD 180 (198)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=1.8e-11 Score=121.13 Aligned_cols=190 Identities=17% Similarity=0.163 Sum_probs=130.6
Q ss_pred CCCCcEEEcccCCcc--------------------cccccC--C--------CCCcceEEccCCCCCCCChhhHhCCCcc
Q 036269 35 FEDLTGISLMFNDIH--------------------EVHEGL--Q--------CPRLQALFLQKNDLLDIPDPFFQGMKDL 84 (623)
Q Consensus 35 ~~~l~~L~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~l~~~~~~~l~~L 84 (623)
+++|+.|++++|.+. .+|+.. . |++|+.+.+.+ .+..++..+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 578999999998887 444433 6 88888888888 7777888888888999
Q ss_pred cEEEccCCcccccCCCc-hhhhccccCcEEeccCCcC---CCCc--ccc-------------------------------
Q 036269 85 KVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQH---FGDL--SLI------------------------------- 127 (623)
Q Consensus 85 r~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~---l~~i--~~~------------------------------- 127 (623)
+.+++..+.+ ..++ .+|..+.++.++....... ...+ ..+
T Consensus 127 ~~l~l~~n~i---~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 127 KICQIRKKTA---PNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp CEEEBCCSSC---CEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred ceEEcCCCCc---cccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 9999988876 3333 3455666666665544110 0000 000
Q ss_pred -------------------cCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccccCc-EEEe
Q 036269 128 -------------------GELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLE-ELYM 186 (623)
Q Consensus 128 -------------------~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~-~L~l 186 (623)
..+++|+.+++++|.++.+|. .|..+++|+.+++.++ +..++..++.++.+|+ .+.+
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEE
Confidence 026788888888888887774 5778888888888873 7778777788888888 8888
Q ss_pred cccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEE
Q 036269 187 SKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFS 242 (623)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~ 242 (623)
.. .+. .-....+.++++|+.+++..+.+..++.. .++++|+.++
T Consensus 282 ~~-~l~-----------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA-SVT-----------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CT-TCC-----------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cce-----------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66 331 22235677888888888887777777665 5666777654
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=3.2e-11 Score=127.61 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=73.6
Q ss_pred cccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEec
Q 036269 83 DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDL 161 (623)
Q Consensus 83 ~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 161 (623)
.|++|++++|.+ ..+|. +..+++|++|++++|. +..+ ..++.+++|++|++++|.++.+| .++.+++|++|++
T Consensus 442 ~L~~L~Ls~n~l---~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDL---TVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCC---SSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCC---CCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 477777777777 55665 7777777777777777 6666 56777777777777777777777 6777777777777
Q ss_pred cCCCCCCcC--chhhhhccccCcEEEecccccc
Q 036269 162 TDCYNLELI--PRGVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 162 ~~~~~~~~l--~~~~~~~l~~L~~L~l~~~~~~ 192 (623)
++ +.++.+ |.. ++.+++|+.|++++|.+.
T Consensus 516 s~-N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 516 CN-NRLQQSAAIQP-LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CS-SCCCSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred CC-CCCCCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence 77 445555 444 777777777777777763
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=1.3e-12 Score=119.06 Aligned_cols=125 Identities=23% Similarity=0.261 Sum_probs=92.3
Q ss_pred CcceEEccCC--CCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcE
Q 036269 59 RLQALFLQKN--DLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEI 135 (623)
Q Consensus 59 ~L~~L~l~~~--~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~ 135 (623)
.++...+.+. .+..++.. +.++++|++|++++|.+ ..+| .+..+++|++|++++|. +..+ ..+..+++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l---~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNI---EKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEE 97 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEE---SCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSE
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCC---cccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCE
Confidence 3455555444 33355544 58888999999988888 5677 78888889999998888 7766 44556688888
Q ss_pred EEcCCCCCccccccccCCCccCEEeccCCCCCCcCch-hhhhccccCcEEEeccccc
Q 036269 136 LDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPR-GVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 136 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~ 191 (623)
|++++|.++.+| .+.++++|++|++++ +.+..++. ..+..+++|++|++++|.+
T Consensus 98 L~L~~N~l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 98 LWISYNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEEEEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred EECcCCcCCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 888888888777 677888888888888 45555553 3377788888888888876
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=4e-11 Score=118.61 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=37.5
Q ss_pred cCCCccEEEEeecCCcccccchhHHHhccccc-eEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcc
Q 036269 372 CLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQ-RLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIW 450 (623)
Q Consensus 372 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 450 (623)
.+++|+.+++.+. ++. ++...+..+++|+ .+++.+ +++++. +..+..+++|+.+++..+ +++.+.
T Consensus 248 ~~~~L~~l~l~~n--i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~--------~~aF~~c~~L~~l~l~~n-~i~~I~ 313 (329)
T 3sb4_A 248 QKKYLLKIKLPHN--LKT-IGQRVFSNCGRLAGTLELPA--SVTAIE--------FGAFMGCDNLRYVLATGD-KITTLG 313 (329)
T ss_dssp TCTTCCEEECCTT--CCE-ECTTTTTTCTTCCEEEEECT--TCCEEC--------TTTTTTCTTEEEEEECSS-CCCEEC
T ss_pred CCCCCCEEECCcc--cce-ehHHHhhCChhccEEEEEcc--cceEEc--------hhhhhCCccCCEEEeCCC-ccCccc
Confidence 3455555555541 433 3333355555555 555554 444442 334455556666665443 344432
Q ss_pred cCCCcccccCCccEEE
Q 036269 451 KGDTQFVSLHDLKKIR 466 (623)
Q Consensus 451 ~~~~~~~~l~~L~~L~ 466 (623)
. ..+..+++|+.++
T Consensus 314 ~--~aF~~~~~L~~ly 327 (329)
T 3sb4_A 314 D--ELFGNGVPSKLIY 327 (329)
T ss_dssp T--TTTCTTCCCCEEE
T ss_pred h--hhhcCCcchhhhc
Confidence 1 2233455555544
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=2.6e-10 Score=100.90 Aligned_cols=99 Identities=22% Similarity=0.383 Sum_probs=48.6
Q ss_pred cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269 39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC 118 (623)
Q Consensus 39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~ 118 (623)
+.++++++.++.+|..+. ++|+.|++++|.+..+++..|.++++|++|++++|.+ ..+|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~i~~~--------------- 75 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL---TAIPTG--------------- 75 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTT---------------
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC---CccChh---------------
Confidence 345555555555544332 4455555555555544333344555555555555544 333332
Q ss_pred cCCCCcccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccC
Q 036269 119 QHFGDLSLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTD 163 (623)
Q Consensus 119 ~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~ 163 (623)
.+.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 76 -------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 76 -------VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp -------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred -------HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 234455555555555555555433 55555566666555
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=3.9e-10 Score=99.43 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=44.1
Q ss_pred eEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcC
Q 036269 62 ALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLS 139 (623)
Q Consensus 62 ~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~ 139 (623)
.+++++|.+..+|..+ .++|++|++++|.+. +..|..+..+++|++|++++|. +..+ ..+.++++|++|+++
T Consensus 13 ~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI---PTTTQVLYLYDNQIT--KLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp EEECTTSCCSSCCSCC---CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCcCccCccC---CCCCcEEEcCCCcCC--ccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 4444444444444322 244444444444442 1113334444444444444444 4333 223445555555555
Q ss_pred CCCCccccc-cccCCCccCEEeccC
Q 036269 140 ESDVSEIPV-SFGRLGHLRLLDLTD 163 (623)
Q Consensus 140 ~~~i~~lp~-~i~~l~~L~~L~l~~ 163 (623)
+|.++.+|. .+.++++|++|++++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCC
Confidence 555555443 355555666666655
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=3.7e-10 Score=99.95 Aligned_cols=101 Identities=26% Similarity=0.469 Sum_probs=80.0
Q ss_pred cEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEec
Q 036269 85 KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDL 161 (623)
Q Consensus 85 r~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l 161 (623)
++++++++.+ +.+|..+. ++|++|++++|. +..+ ..+.++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 15 ~~l~~~~n~l---~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRL---ASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCC---SSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCC---CccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 5666776666 56665442 677777777777 6555 4577888888888888888888865 589999999999
Q ss_pred cCCCCCCcCchhhhhccccCcEEEecccccc
Q 036269 162 TDCYNLELIPRGVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 162 ~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 192 (623)
++ +.+..+|.+.+..+++|++|++++|.+.
T Consensus 89 ~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 ND-NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CS-SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CC-CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99 6777888877899999999999999874
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=9e-10 Score=97.09 Aligned_cols=102 Identities=27% Similarity=0.480 Sum_probs=73.2
Q ss_pred cccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEE
Q 036269 83 DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLL 159 (623)
Q Consensus 83 ~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L 159 (623)
..++++++++.+ ..+|..+ .++|++|++++|. +..+ ..+.++++|++|++++|.++.+|.. +.++++|++|
T Consensus 10 ~~~~l~~s~n~l---~~ip~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSL---ASVPTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCC---SSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCCc---CccCccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 356788888887 6677655 3678888888887 7665 4577777888888888877776654 4677778888
Q ss_pred eccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 160 DLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 160 ~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
++++ +.+..++.+.+..+++|+.|++++|.+
T Consensus 84 ~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 84 SLND-NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCC-CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 8777 456666665567777777777777655
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=4e-10 Score=112.67 Aligned_cols=161 Identities=17% Similarity=0.101 Sum_probs=104.3
Q ss_pred CCCcceEEccCCCCCCCChhhHh-----CCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccc-
Q 036269 57 CPRLQALFLQKNDLLDIPDPFFQ-----GMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLI- 127 (623)
Q Consensus 57 ~~~L~~L~l~~~~~~~l~~~~~~-----~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~- 127 (623)
.+.|+.|++++|.+.......+. ..++|++|++++|.++ +.-. .....+++|++|++++|. +++. ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHH
Confidence 35788888888887632222222 2368889999888874 2222 223456788889998887 7543 222
Q ss_pred ----cCCcCCcEEEcCCCCCcc-----ccccccCCCccCEEeccCCCCCCcCc----hhhhhccccCcEEEecccccccc
Q 036269 128 ----GELSLLEILDLSESDVSE-----IPVSFGRLGHLRLLDLTDCYNLELIP----RGVLSRLRKLEELYMSKTFCHWQ 194 (623)
Q Consensus 128 ----~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~l~----~~~~~~l~~L~~L~l~~~~~~~~ 194 (623)
...++|++|++++|.++. ++..+...++|++|++++|. ++... ...+...++|++|++++|.+...
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 346788899998888763 45566778888889888853 44322 12256677888888888877311
Q ss_pred cccccccccccccccccCCCCccEEEeecCCCcc
Q 036269 195 FENEDDSRSNAKFIELGALSRLTSLHIDIPEGEI 228 (623)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (623)
. ...+...+...++|+.|++++|.++.
T Consensus 227 g-------~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 227 A-------ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp H-------HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred H-------HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 1 12333445566788888888887543
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=4.1e-10 Score=112.61 Aligned_cols=154 Identities=14% Similarity=0.037 Sum_probs=113.1
Q ss_pred CCCCcEEEcccCCcccc-----cccC--CCCCcceEEccCCCCCC-CChhhHhCCCcccEEEccCCcccccCCCchhh--
Q 036269 35 FEDLTGISLMFNDIHEV-----HEGL--QCPRLQALFLQKNDLLD-IPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-- 104 (623)
Q Consensus 35 ~~~l~~L~l~~~~~~~l-----~~~~--~~~~L~~L~l~~~~~~~-l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~-- 104 (623)
.+.++.|++++|.++.. .... ..++|+.|++++|.+.+ -...++..+++|++|++++|.++ +.-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~--~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG--PEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC--HHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC--HHHHHHHHH
Confidence 36799999999998642 2222 23689999999999862 22233455778999999999984 2222233
Q ss_pred ---hccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCcc-----ccccccCCCccCEEeccCCCCCCcC
Q 036269 105 ---SFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVSE-----IPVSFGRLGHLRLLDLTDCYNLELI 170 (623)
Q Consensus 105 ---~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~l 170 (623)
...++|++|++++|. +++. ..+...++|++|++++|.++. ++..+...++|++|++++| .++..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 235789999999998 8542 345788999999999999873 4567778889999999995 45433
Q ss_pred ch----hhhhccccCcEEEecccccc
Q 036269 171 PR----GVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 171 ~~----~~~~~l~~L~~L~l~~~~~~ 192 (623)
.. ..+...+.|++|++++|.+.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 22 12456789999999999873
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=1.1e-07 Score=95.87 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=107.0
Q ss_pred CCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEE
Q 036269 36 EDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTL 113 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L 113 (623)
..++.+.+.. .++.++... .-.+|+.+.+..+ +..++..+|.++ +|+.+.+.. .+ ..++ .+|..|++|+.+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l---~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TL---EQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TC---CEECSSTTTTCTTCCEE
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Cc---cEehHHHhhCcccCCee
Confidence 3444444432 344454433 2235777777655 556666666664 577777765 34 3333 456677777777
Q ss_pred eccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccc
Q 036269 114 SLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTF 190 (623)
Q Consensus 114 ~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 190 (623)
++.++. +..+ ..+. ..+|+.+.+..+ +..++ ..|..+++|+.+.+.. .+..++..++.+ .+|+.+.+..+
T Consensus 186 ~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~- 258 (401)
T 4fdw_A 186 DLSKTK-ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG- 258 (401)
T ss_dssp ECTTSC-CSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-
T ss_pred ecCCCc-ceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-
Confidence 777766 6555 2333 467777777643 55554 4566777777777765 355666655655 56777777432
Q ss_pred cccccccccccccccccccccCCCCccEEEeecCCCc-----cCCCc--ccccCccEEEEE
Q 036269 191 CHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE-----IMPSD--MSFQNLTSFSIT 244 (623)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~--~~~~~L~~L~l~ 244 (623)
+. .-....+.++++|+.+.+.++... .++.. ..+++|+.+.+.
T Consensus 259 i~-----------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 259 VT-----------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp CC-----------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred cc-----------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 21 122345667777777777765543 34333 566677776553
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.81 E-value=7.6e-08 Score=97.55 Aligned_cols=328 Identities=13% Similarity=0.112 Sum_probs=178.6
Q ss_pred cccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc
Q 036269 48 IHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL 124 (623)
Q Consensus 48 ~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i 124 (623)
++++.... +|.+|+.+.+..+ +..+...+|.+|++|+.+++..+ + ..++ .++..+.+|+.+.+..+ +..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l---~~I~~~aF~~c~~L~~i~~p~~--l~~i 131 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-V---KMIGRCTFSGCYALKSILLPLM--LKSI 131 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-C---CEECTTTTTTCTTCCCCCCCTT--CCEE
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-c---eEccchhhcccccchhhcccCc--eeee
Confidence 56676654 8899999999744 66788888999999999999755 4 3443 45778888888777643 3333
Q ss_pred --ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccccccc
Q 036269 125 --SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDS 201 (623)
Q Consensus 125 --~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 201 (623)
..+.+...+.... .. .+..+ ...+..+++|+.+.+.. ....++...+..+.+|+.+.+..+.-
T Consensus 132 ~~~aF~~~~~~~~~~-~~-~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~~~---------- 197 (394)
T 4fs7_A 132 GVEAFKGCDFKEITI-PE-GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRNLK---------- 197 (394)
T ss_dssp CTTTTTTCCCSEEEC-CT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTTCC----------
T ss_pred cceeeeccccccccc-Cc-cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCCce----------
Confidence 3344443333322 22 12222 24577788888888865 34556666677888888887755411
Q ss_pred ccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeecccccc
Q 036269 202 RSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRI 280 (623)
Q Consensus 202 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 280 (623)
.-....+.++..|+.+.+..+.. .+... .....|+.+.+.....
T Consensus 198 --~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~-------------------------------- 242 (394)
T 4fs7_A 198 --IIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDSFT-------------------------------- 242 (394)
T ss_dssp --EECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTTCC--------------------------------
T ss_pred --EeCchhhccccccceeecCCCce-EeehhhcccCCCceEEECCCce--------------------------------
Confidence 11123455566666655543321 11111 3334555555421110
Q ss_pred ccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCccc
Q 036269 281 SALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNF 360 (623)
Q Consensus 281 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 360 (623)
.+.......+..++.+.+.... .. +....+..++.++.+..... .++.. ....+.+|+.+.+.+. +
T Consensus 243 -~i~~~~f~~~~~l~~~~~~~~~--~~-i~~~~F~~~~~l~~~~~~~~----~i~~~----~F~~~~~L~~i~l~~~--i 308 (394)
T 4fs7_A 243 -ELGKSVFYGCTDLESISIQNNK--LR-IGGSLFYNCSGLKKVIYGSV----IVPEK----TFYGCSSLTEVKLLDS--V 308 (394)
T ss_dssp -EECSSTTTTCSSCCEEEECCTT--CE-ECSCTTTTCTTCCEEEECSS----EECTT----TTTTCTTCCEEEECTT--C
T ss_pred -ecccccccccccceeEEcCCCc--ce-eeccccccccccceeccCce----eeccc----cccccccccccccccc--c
Confidence 0000000001344444443221 11 11112244556666555433 12111 3344566777766532 3
Q ss_pred ccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEec
Q 036269 361 VEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTL 440 (623)
Q Consensus 361 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l 440 (623)
+.+ +......+.+|+.+.+.+ .++. +....+.+|.+|+.+.+.. +++++. ...+..+++|+.+++
T Consensus 309 ~~I--~~~aF~~c~~L~~i~lp~--~v~~-I~~~aF~~c~~L~~i~lp~--~l~~I~--------~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 309 KFI--GEEAFESCTSLVSIDLPY--LVEE-IGKRSFRGCTSLSNINFPL--SLRKIG--------ANAFQGCINLKKVEL 373 (394)
T ss_dssp CEE--CTTTTTTCTTCCEECCCT--TCCE-ECTTTTTTCTTCCEECCCT--TCCEEC--------TTTBTTCTTCCEEEE
T ss_pred cee--chhhhcCCCCCCEEEeCC--cccE-EhHHhccCCCCCCEEEECc--cccEeh--------HHHhhCCCCCCEEEE
Confidence 322 222233567788887753 3554 4444477788888888865 366663 445677888888888
Q ss_pred CCccchhhcccCCCcccccCCccEE
Q 036269 441 IGLPRMTDIWKGDTQFVSLHDLKKI 465 (623)
Q Consensus 441 ~~c~~l~~i~~~~~~~~~l~~L~~L 465 (623)
... ++.+ ...+..+++|+.+
T Consensus 374 p~~--~~~~---~~~F~~c~~L~~I 393 (394)
T 4fs7_A 374 PKR--LEQY---RYDFEDTTKFKWI 393 (394)
T ss_dssp EGG--GGGG---GGGBCTTCEEEEE
T ss_pred CCC--CEEh---hheecCCCCCcEE
Confidence 643 4443 2335556666654
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=1.1e-07 Score=95.96 Aligned_cols=192 Identities=15% Similarity=0.151 Sum_probs=137.1
Q ss_pred CCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEE
Q 036269 37 DLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTL 113 (623)
Q Consensus 37 ~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L 113 (623)
+|+.+.+.. .++.+.... .|++|+.+++.+|.+..++...|. +..|+.+.+..+ + ..++ .+|.++++|+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l---~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-L---KEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-C---CEECTTTTTTCTTCCCE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-h---heehhhHhhCCCCCCEE
Confidence 577788775 566776544 889999999999999888888877 689999999855 4 4444 467889999999
Q ss_pred eccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCC----CCcCchhhhhccccCcEEEe
Q 036269 114 SLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYN----LELIPRGVLSRLRKLEELYM 186 (623)
Q Consensus 114 ~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~----~~~l~~~~~~~l~~L~~L~l 186 (623)
++..+ +..+ ..+.+ .+|+.+.+. +.++.++ ..|..+++|+.+.+.++.. ...++...+.++++|+.+.+
T Consensus 232 ~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 232 EIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp ECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred ecCCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 99864 5555 44555 688998884 4466664 5678889999999877321 12477777888999999988
Q ss_pred cccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCC
Q 036269 187 SKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVP 252 (623)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~ 252 (623)
..+ +. .-....+.++++|+.+.+..+ +..+... ..+ +|+.+.+..+......
T Consensus 308 ~~~-i~-----------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 308 PES-IR-----------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp CTT-CC-----------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred CCc-eE-----------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 743 31 222345777888998888544 5555444 556 8888888877654443
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.76 E-value=1.3e-07 Score=95.92 Aligned_cols=328 Identities=13% Similarity=0.076 Sum_probs=201.9
Q ss_pred CCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc
Q 036269 71 LDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP 147 (623)
Q Consensus 71 ~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp 147 (623)
+.+...+|.+|++|+.+.+..+ + ..+. .+|.+|.+|+.+++.++ +..+ ..+.++.+|+.+.+..+ +..+.
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred eEhHHHHhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeec
Confidence 4678888999999999999754 5 4444 46889999999999754 5555 56778888888777654 33332
Q ss_pred -ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269 148 -VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG 226 (623)
Q Consensus 148 -~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 226 (623)
..+..+..+..... .....+....+.++.+|+.+.+..+.. .-....+..+.+|+.+.+..+ +
T Consensus 133 ~~aF~~~~~~~~~~~---~~~~~i~~~aF~~c~~L~~i~l~~~~~------------~I~~~~F~~c~~L~~i~l~~~-~ 196 (394)
T 4fs7_A 133 VEAFKGCDFKEITIP---EGVTVIGDEAFATCESLEYVSLPDSME------------TLHNGLFSGCGKLKSIKLPRN-L 196 (394)
T ss_dssp TTTTTTCCCSEEECC---TTCCEECTTTTTTCTTCCEEECCTTCC------------EECTTTTTTCTTCCBCCCCTT-C
T ss_pred ceeeecccccccccC---ccccccchhhhcccCCCcEEecCCccc------------eeccccccCCCCceEEEcCCC-c
Confidence 34445444333332 234455555689999999999866432 122335677888888877654 3
Q ss_pred ccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCC
Q 036269 227 EIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVND 304 (623)
Q Consensus 227 ~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 304 (623)
..+... ..+..|+.+.+.... .. + ...... ..+|+.+.+....
T Consensus 197 ~~I~~~~F~~~~~L~~i~~~~~~----------------------~~--i---------~~~~~~-~~~l~~i~ip~~~- 241 (394)
T 4fs7_A 197 KIIRDYCFAECILLENMEFPNSL----------------------YY--L---------GDFALS-KTGVKNIIIPDSF- 241 (394)
T ss_dssp CEECTTTTTTCTTCCBCCCCTTC----------------------CE--E---------CTTTTT-TCCCCEEEECTTC-
T ss_pred eEeCchhhccccccceeecCCCc----------------------eE--e---------ehhhcc-cCCCceEEECCCc-
Confidence 333332 445555554332111 00 0 000000 1456666664321
Q ss_pred cccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeec
Q 036269 305 LENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDC 384 (623)
Q Consensus 305 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 384 (623)
.. +....+..+..++.+.+... +..+... ....++.++.+...... ........+.+|+.+.+.+
T Consensus 242 -~~-i~~~~f~~~~~l~~~~~~~~--~~~i~~~----~F~~~~~l~~~~~~~~~------i~~~~F~~~~~L~~i~l~~- 306 (394)
T 4fs7_A 242 -TE-LGKSVFYGCTDLESISIQNN--KLRIGGS----LFYNCSGLKKVIYGSVI------VPEKTFYGCSSLTEVKLLD- 306 (394)
T ss_dssp -CE-ECSSTTTTCSSCCEEEECCT--TCEECSC----TTTTCTTCCEEEECSSE------ECTTTTTTCTTCCEEEECT-
T ss_pred -ee-cccccccccccceeEEcCCC--cceeecc----ccccccccceeccCcee------ecccccccccccccccccc-
Confidence 11 22222356788888888665 2233222 34456667766655432 1112234678899999874
Q ss_pred CCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccE
Q 036269 385 GSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKK 464 (623)
Q Consensus 385 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~ 464 (623)
.++. ++...+..|.+|+.+++.+ .++++. ...+..+.+|+.+.+... ++.+.. ..+..|++|++
T Consensus 307 -~i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~--------~~aF~~c~~L~~i~lp~~--l~~I~~--~aF~~C~~L~~ 370 (394)
T 4fs7_A 307 -SVKF-IGEEAFESCTSLVSIDLPY--LVEEIG--------KRSFRGCTSLSNINFPLS--LRKIGA--NAFQGCINLKK 370 (394)
T ss_dssp -TCCE-ECTTTTTTCTTCCEECCCT--TCCEEC--------TTTTTTCTTCCEECCCTT--CCEECT--TTBTTCTTCCE
T ss_pred -ccce-echhhhcCCCCCCEEEeCC--cccEEh--------HHhccCCCCCCEEEECcc--ccEehH--HHhhCCCCCCE
Confidence 4554 4445578899999999964 477763 446677899999999753 666532 34567899999
Q ss_pred EEEEcCCCcceeccCcccCcccchhh
Q 036269 465 IRVVFCDELRQVFPANLGKKAAAEEM 490 (623)
Q Consensus 465 L~l~~C~~l~~~~~~~l~~~~~L~~l 490 (623)
+.+.. .++.. ...+..|++|+.+
T Consensus 371 i~lp~--~~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 371 VELPK--RLEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEG--GGGGG-GGGBCTTCEEEEE
T ss_pred EEECC--CCEEh-hheecCCCCCcEE
Confidence 99975 34444 5667788888865
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=2.9e-08 Score=98.86 Aligned_cols=94 Identities=18% Similarity=0.128 Sum_probs=42.4
Q ss_pred EccCC-CCCCCChhhHhCCCcccEEEccC-CcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEc
Q 036269 64 FLQKN-DLLDIPDPFFQGMKDLKVLDLGG-SGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDL 138 (623)
Q Consensus 64 ~l~~~-~~~~l~~~~~~~l~~Lr~L~l~~-~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l 138 (623)
+++++ .+..+|. +..+++|++|+|++ |.+ ..+| ..|..+++|++|++++|. +..+ ..+.++++|++|+|
T Consensus 14 ~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 14 RCTRDGALDSLHH--LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp ECCSSCCCTTTTT--SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred EcCCCCCCCccCC--CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence 44443 3444444 24444444444443 444 2222 234444444444444444 4333 23445555555555
Q ss_pred CCCCCccccccccCCCccCEEeccC
Q 036269 139 SESDVSEIPVSFGRLGHLRLLDLTD 163 (623)
Q Consensus 139 ~~~~i~~lp~~i~~l~~L~~L~l~~ 163 (623)
++|.++.+|..+.....|++|++.+
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCS
T ss_pred CCCccceeCHHHcccCCceEEEeeC
Confidence 5555555543332222355555555
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.68 E-value=1.1e-08 Score=88.65 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=47.1
Q ss_pred CCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcce-eecCcccceecccCcccce
Q 036269 516 GNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEK-ITFPSLFSIQLCLLDSLTC 594 (623)
Q Consensus 516 ~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~ 594 (623)
..|++|++++|. +++..- ..+.++++|++|++++|+.+++- ++.++. .. ...++|++|+|++|+++++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~-----gL~~L~----~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDG-----CLERLS----QLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHH-----HHHHHH----TCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHH-----HHHHHH----hcccccCCCCEEEcCCCCcCCH
Confidence 356666666665 554322 22455666666666666655544 111110 00 0123566666666666665
Q ss_pred ecCCCCcceeecCCccEEEeccCCCCc
Q 036269 595 FCSSGSHATVEFLALEALQIIDCPGMK 621 (623)
Q Consensus 595 ~~~~~~~~~~~~~~L~~L~i~~c~~l~ 621 (623)
.+. .. ...+++|++|++++|++++
T Consensus 130 ~Gl-~~--L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 KGI-IA--LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHH-HH--GGGCTTCCEEEEESCTTCC
T ss_pred HHH-HH--HhcCCCCCEEECCCCCCCC
Confidence 543 22 2235666666666666654
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=5.6e-08 Score=96.74 Aligned_cols=100 Identities=24% Similarity=0.378 Sum_probs=79.1
Q ss_pred EEEcccC-CcccccccC-CCCCcceEEccC-CCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269 40 GISLMFN-DIHEVHEGL-QCPRLQALFLQK-NDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116 (623)
Q Consensus 40 ~L~l~~~-~~~~l~~~~-~~~~L~~L~l~~-~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~ 116 (623)
.++.+++ .++.+|. + .+++|+.|+|++ |.+..++...|.++++|++|+|++|.+. +..|..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--EECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--eeCHHHhcCCcCCCEEeCC
Confidence 4577777 7888888 6 778899999986 8888888777788999999999999884 3444567889999999999
Q ss_pred CCcCCCCc--ccccCCcCCcEEEcCCCCCc
Q 036269 117 DCQHFGDL--SLIGELSLLEILDLSESDVS 144 (623)
Q Consensus 117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~ 144 (623)
+|. +..+ ..+..+. |++|++.+|.+.
T Consensus 89 ~N~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNA-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSC-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCc-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 988 8766 3344444 999999988776
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=2.6e-08 Score=86.23 Aligned_cols=64 Identities=11% Similarity=0.214 Sum_probs=28.9
Q ss_pred ccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHh----ccccceEEEecccccee
Q 036269 348 KLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQS----FQNLQRLRVEGCELLVS 415 (623)
Q Consensus 348 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~~l~~ 415 (623)
.|+.|++++|. +++..... ...+++|+.|++++|..+++..-.. +.. +++|++|++++|++|++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCC-ccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCH
Confidence 45555555554 43322111 1245555555555555555432222 222 23455555555555444
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=3.7e-07 Score=90.33 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=26.4
Q ss_pred hhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCcc-ccccc--cCCCccCEEecc
Q 036269 102 SSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSE-IPVSF--GRLGHLRLLDLT 162 (623)
Q Consensus 102 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~-lp~~i--~~l~~L~~L~l~ 162 (623)
..+..+|+|+.|++++|..+ .+..+ .+++|++|++..+.+.. ....+ .++++|++|+++
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 33445555666666554211 11112 24556666655554431 11122 245556665553
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.40 E-value=3.7e-05 Score=77.64 Aligned_cols=133 Identities=13% Similarity=0.228 Sum_probs=72.5
Q ss_pred ccccccC--CCC-CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc
Q 036269 49 HEVHEGL--QCP-RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL 124 (623)
Q Consensus 49 ~~l~~~~--~~~-~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i 124 (623)
+.+.+.. ++. .|+.+.+... ++.+...+|.+|++|+.+.+..+.-.+...+. .+|..+.+|+.+.+..+ +..+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--ccee
Confidence 3444433 443 4777777543 55666667777888888777654311003333 34666777776665543 3344
Q ss_pred --ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269 125 --SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188 (623)
Q Consensus 125 --~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~ 188 (623)
..+..+.+|+.+.+..+ +..++ ..+..+..|+.+.+.. .+..+....+.. .+|+.+.+..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECT
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECC
Confidence 45566677777776543 23232 3455666677666654 244444443332 4566665543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=2.8e-07 Score=91.25 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=88.9
Q ss_pred CCCCcceEEccCCCCC---------CCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCC--c
Q 036269 56 QCPRLQALFLQKNDLL---------DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD--L 124 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~---------~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~--i 124 (623)
.+++|+.|.+.+.... .-...++..+|+|+.|+++++.- ..++. + .+++|+.|++..|. +.. +
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~---l~l~~-~-~~~~L~~L~L~~~~-l~~~~l 210 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN---LSIGK-K-PRPNLKSLEIISGG-LPDSVV 210 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT---CBCCS-C-BCTTCSEEEEECSB-CCHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC---ceecc-c-cCCCCcEEEEecCC-CChHHH
Confidence 5667777777554321 01224457778888888877632 23333 2 36788888887776 532 2
Q ss_pred cccc--CCcCCcEEEcCCC--C------Cccccccc--cCCCccCEEeccCCCCCCcCchhhh--hccccCcEEEecccc
Q 036269 125 SLIG--ELSLLEILDLSES--D------VSEIPVSF--GRLGHLRLLDLTDCYNLELIPRGVL--SRLRKLEELYMSKTF 190 (623)
Q Consensus 125 ~~~~--~l~~L~~L~l~~~--~------i~~lp~~i--~~l~~L~~L~l~~~~~~~~l~~~~~--~~l~~L~~L~l~~~~ 190 (623)
..+. .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|......+..+. ..+++|++|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 3333 6788888877421 1 21222222 2467888888877543322222211 246788888887776
Q ss_pred cccccccccccccccccccccCCCCccEEEeecCCC
Q 036269 191 CHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG 226 (623)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 226 (623)
+...- ...+...+..+++|+.|++++|.+
T Consensus 291 L~d~G-------~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 291 LTDEG-------ARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CBHHH-------HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CChHH-------HHHHHhhcccCCcceEEECCCCcC
Confidence 52100 012333445677888888887764
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=7.9e-05 Score=75.20 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=73.2
Q ss_pred CCChhhHhCCC-cccEEEccCCcccccCCCc-hhhhccccCcEEeccCCc--CCCCc--ccccCCcCCcEEEcCCCCCcc
Q 036269 72 DIPDPFFQGMK-DLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQ--HFGDL--SLIGELSLLEILDLSESDVSE 145 (623)
Q Consensus 72 ~l~~~~~~~l~-~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~--~l~~i--~~~~~l~~L~~L~l~~~~i~~ 145 (623)
.+...+|.+++ .|+.+.+..+ + +.+. .+|.+|.+|+.+.+..+. .++.+ ..+.++.+|+.+.+..+ ++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-v---t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-V---TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-C---CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred EcCHhhccCCCCcCEEEEECCC-e---eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 56666788875 5899888754 4 3333 568889999999887652 24445 45667777777766544 344
Q ss_pred cc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccc
Q 036269 146 IP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT 189 (623)
Q Consensus 146 lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~ 189 (623)
++ ..+..+.+|+.+.+.. ....++...+..+..|+.+.+..+
T Consensus 128 I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred ehhhhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence 43 3466777888887764 345566555777777877777543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.05 E-value=4.1e-06 Score=74.50 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=29.3
Q ss_pred CCCCcceEEccCC-CCCC-----CChhhHhCCCcccEEEccCCccccc--CCCchhhhccccCcEEeccCCc
Q 036269 56 QCPRLQALFLQKN-DLLD-----IPDPFFQGMKDLKVLDLGGSGVFSL--FSLPSSLSFLINLRTLSLHDCQ 119 (623)
Q Consensus 56 ~~~~L~~L~l~~~-~~~~-----l~~~~~~~l~~Lr~L~l~~~~~~~~--~~lp~~~~~l~~L~~L~l~~~~ 119 (623)
..+.|++|++++| .+.+ +.. .+...+.|++|++++|.+... ..+...+...++|++|++++|.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3455666666665 5431 111 134455566666666655310 0122233344455555555555
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=6.2e-06 Score=73.33 Aligned_cols=113 Identities=13% Similarity=0.064 Sum_probs=72.5
Q ss_pred hHhCCCcccEEEccCC-ccccc--CCCchhhhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCcc--
Q 036269 77 FFQGMKDLKVLDLGGS-GVFSL--FSLPSSLSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVSE-- 145 (623)
Q Consensus 77 ~~~~l~~Lr~L~l~~~-~~~~~--~~lp~~~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~~-- 145 (623)
++...+.|++|++++| .+... ..+...+...++|++|++++|. +++- ..+...++|++|++++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3567888999999888 77410 1233445566788888888888 7442 345556778888888888762
Q ss_pred ---ccccccCCCccCEEec--cCCCCCCcCch----hhhhccccCcEEEeccccc
Q 036269 146 ---IPVSFGRLGHLRLLDL--TDCYNLELIPR----GVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 146 ---lp~~i~~l~~L~~L~l--~~~~~~~~l~~----~~~~~l~~L~~L~l~~~~~ 191 (623)
+...+...++|++|++ ++ +.++.... ..+...+.|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4556667777888888 55 34433211 1234446677777766655
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=8.6e-06 Score=76.19 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=40.6
Q ss_pred ccccCcEEeccCCcCCCCcc----cccCCcCCcEEEcCCCCCccccccccCCC--ccCEEeccCCCCCCcCc------hh
Q 036269 106 FLINLRTLSLHDCQHFGDLS----LIGELSLLEILDLSESDVSEIPVSFGRLG--HLRLLDLTDCYNLELIP------RG 173 (623)
Q Consensus 106 ~l~~L~~L~l~~~~~l~~i~----~~~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~l~~~~~~~~l~------~~ 173 (623)
++++|++|++++|. +..+. .+..+++|+.|+|++|.++.+. .+..+. +|+.|++++|.....+| ..
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45566666666665 54432 2335566666666666655442 233333 66666666644333333 12
Q ss_pred hhhccccCcEEE
Q 036269 174 VLSRLRKLEELY 185 (623)
Q Consensus 174 ~~~~l~~L~~L~ 185 (623)
++..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355666666664
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=1.3e-05 Score=75.02 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=34.1
Q ss_pred cCCcCCcEEEcCCCCCccc---cccccCCCccCEEeccCCCCCCcCchhhhhccc--cCcEEEeccccc
Q 036269 128 GELSLLEILDLSESDVSEI---PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR--KLEELYMSKTFC 191 (623)
Q Consensus 128 ~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~--~L~~L~l~~~~~ 191 (623)
.++++|+.|+|++|.++.+ |..+.++++|+.|++++ +.+..+.. +..+. +|++|++.+|.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE--LDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG--GGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh--hhhcccCCcceEEccCCcC
Confidence 3456666666666666543 23445666666666666 34444421 33333 666666666655
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.59 E-value=0.0049 Score=61.53 Aligned_cols=34 Identities=9% Similarity=0.231 Sum_probs=19.1
Q ss_pred CCCcceEEccCCCCCCCChhhHhCCCcccEEEccC
Q 036269 57 CPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG 91 (623)
Q Consensus 57 ~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~ 91 (623)
..+|+.+.+.. .++.++..+|.+|.+|+.+++..
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC
Confidence 34566665542 23455555566666666666643
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.50 E-value=0.0091 Score=59.57 Aligned_cols=36 Identities=6% Similarity=0.244 Sum_probs=19.4
Q ss_pred HhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccC
Q 036269 78 FQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHD 117 (623)
Q Consensus 78 ~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~ 117 (623)
+....+|+.+.+... + +.++ .+|.+|.+|+.+++..
T Consensus 42 ~~~~~~i~~v~ip~~-v---t~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-I---TSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGGGGGCSEEEECTT-E---EEECTTTTTTCTTCCEEEECT
T ss_pred cccccCCEEEEeCCC-c---cChHHHHhhCCCCCCEEEeCC
Confidence 455566666666432 3 2333 3456666666666643
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.41 E-value=0.0053 Score=50.39 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=37.1
Q ss_pred EEEcccCCcc--cccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcc
Q 036269 40 GISLMFNDIH--EVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGV 94 (623)
Q Consensus 40 ~L~l~~~~~~--~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 94 (623)
.++-+++.++ .+|..+. ++++.|+|++|.+..++..+|..+++|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666666 6665432 3577777777777777777777777777777777765
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.15 E-value=0.023 Score=49.96 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=27.1
Q ss_pred CCcceEEccCC-CCCC----CChhhHhCCCcccEEEccCCccccc--CCCchhhhccccCcEEeccCCc
Q 036269 58 PRLQALFLQKN-DLLD----IPDPFFQGMKDLKVLDLGGSGVFSL--FSLPSSLSFLINLRTLSLHDCQ 119 (623)
Q Consensus 58 ~~L~~L~l~~~-~~~~----l~~~~~~~l~~Lr~L~l~~~~~~~~--~~lp~~~~~l~~L~~L~l~~~~ 119 (623)
+.|+.|+|+++ .+.+ .....+..-+.|+.|+|++|.+... ..+...+..-+.|++|+++.|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 45666666553 4331 0111224445555555555555310 1122233334455555555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.76 E-value=0.05 Score=44.46 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=33.9
Q ss_pred EEEcCCCCCc--cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 135 ILDLSESDVS--EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 135 ~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
.++-+++.++ .+|..+. ++|++|++++ +.++.++.+++..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 4555566665 6664432 3567777777 556667666666777777777776644
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.63 E-value=0.051 Score=47.74 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=58.0
Q ss_pred HhCCCcccEEEccCC-ccccc--CCCchhhhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCc----
Q 036269 78 FQGMKDLKVLDLGGS-GVFSL--FSLPSSLSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVS---- 144 (623)
Q Consensus 78 ~~~l~~Lr~L~l~~~-~~~~~--~~lp~~~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~---- 144 (623)
...-+.|++|+++++ .+... ..+-..+..-..|+.|++++|. +++- ..+..-..|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 456788999999875 66310 1233455566789999999888 7543 34555578888898888887
Q ss_pred -cccccccCCCccCEEeccCC
Q 036269 145 -EIPVSFGRLGHLRLLDLTDC 164 (623)
Q Consensus 145 -~lp~~i~~l~~L~~L~l~~~ 164 (623)
.+-+.+..-+.|+.|+++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 23345555567888888753
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=66.59 E-value=1.5 Score=45.75 Aligned_cols=18 Identities=0% Similarity=0.309 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHhhccce
Q 036269 1 MHDVVRYVAQQIASKNKF 18 (623)
Q Consensus 1 mHdl~~d~~~~~~~~~~~ 18 (623)
|||+|||+|+.+++++|.
T Consensus 456 mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCHHHHHHHHTTSCTHHH
T ss_pred eChHHHHHHHHHHHHHHH
Confidence 899999999999988875
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.85 E-value=14 Score=27.98 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=20.3
Q ss_pred CCCCChhhHhCCCcccEEEccCCcccccCCC-chhhhccccCcEEeccC
Q 036269 70 LLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-PSSLSFLINLRTLSLHD 117 (623)
Q Consensus 70 ~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p~~~~~l~~L~~L~l~~ 117 (623)
++.+...+|.+|+.|+.+.+-.+- ..+ ..+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v----~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI----GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS----SCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCch----heEcHHHHhccCCccEEEEcC
Confidence 334444555555555555554331 111 12344555555555443
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.05 E-value=42 Score=25.27 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=36.2
Q ss_pred cCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCc
Q 036269 45 FNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG 93 (623)
Q Consensus 45 ~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~ 93 (623)
+..++.+.... +|..|+.+.+..+ ++.+...+|.+|.+|+.+.+.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 34556665544 8899999998765 457777789999999999997653
Done!