BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036271
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 27/276 (9%)
Query: 30 KFPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQ 89
K P GP WP+IG++ +G PH +L ++SQ+YG ++Q++ GS PVVV + + +Q L
Sbjct: 11 KNPPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALV 70
Query: 90 THDHIFASRPQTAAGKHTTYNYLNLTWAP-YGPYWRQGRKLYLSELFS---SKRLESYQY 145
F RP + N +++++P GP W R+L + L S + S
Sbjct: 71 RQGDDFKGRPDLYTFTLIS-NGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTS 129
Query: 146 IRVEEY-----RAFISRLYALSGKPVVLKEHLSRV--TLSIISRTVLGKKY-FSESKAED 197
+EE+ IS L L P + V ++I G++Y + +
Sbjct: 130 CYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLS 189
Query: 198 SIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDE 257
+ F E++ G N D+IP L +L + K L +KF F + E
Sbjct: 190 LVNLNNNFGEVV-------GSGNPADFIPILRYLP-NPSLNAFKDLNEKFYSFMQKMVKE 241
Query: 258 H-KANRKGNLKDFVPKDMVDLLLQMADDPNLDVKLN 292
H K KG++ +D+ D L++ + LD N
Sbjct: 242 HYKTFEKGHI-----RDITDSLIEHCQEKQLDENAN 272
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 27/265 (10%)
Query: 32 PAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTH 91
P GP WP+IGN +G H S +L+++YG + Q++ GS P+VV Q L
Sbjct: 11 PPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQ 70
Query: 92 DHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSEL--FSSKRLESYQYIR-- 147
FA RP A+ + + ++ + Y +W+ R+ S + F +++ S Q +
Sbjct: 71 GSAFADRPSFASFRVVSGGR-SMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGH 129
Query: 148 -VEEYRAFISRLYALSGKPVVLKEH-LSRVTLS-IISRTVLGKKYFSESKAEDSIVTLEE 204
+ E R ++ L S L L+ V ++ ++S G +Y + E
Sbjct: 130 VLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGCRYSHDDP---------E 180
Query: 205 FQEML---DELFLLNGVLNIGDWIPWLDFL--DLQGYVKRMKALKKKFDRFHDHVFDEHK 259
F+E+L +E G ++ D +PWL + ++ + + L + F F F H
Sbjct: 181 FRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHC 240
Query: 260 AN-RKGNLKDFVPKDMVDLLLQMAD 283
+ R G P+DM+D + A+
Sbjct: 241 ESLRPGA----APRDMMDAFILSAE 261
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 15/238 (6%)
Query: 30 KFPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQ 89
K P P WP++G++ +G PH +L ++SQ+YG ++Q++ GS PV+V + + +Q L
Sbjct: 16 KSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALV 75
Query: 90 THDHIFASRPQTAAGKHTTYNYLNLTWAP-YGPYWRQGRKLYLSEL-----FSSKRLESY 143
F RP T + +LT++ GP W R+L + L S S
Sbjct: 76 RQGDDFKGRPDLYTSTLIT-DGQSLTFSTDSGPVWAARRRLAQNALNTFSIASDPASSSS 134
Query: 144 QYIR---VEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIV 200
Y+ +E +A ISRL L P + ++V +S+ + V+G F + E S
Sbjct: 135 CYLEEHVSKEAKALISRLQELMAGPGHFDPY-NQVVVSVAN--VIGAMCFGQHFPESSDE 191
Query: 201 TLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEH 258
L + E N D+ P L +L ++R KA ++F F EH
Sbjct: 192 MLSLVKNT-HEFVETASSGNPLDFFPILRYLP-NPALQRFKAFNQRFLWFLQKTVQEH 247
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 17/243 (6%)
Query: 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRP 99
+ G L+L+ P L L+QK G + +L+ G VVV S ++ + FA RP
Sbjct: 34 VPGFLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRP 93
Query: 100 QTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLY 159
Q + K + +++ Y W+ +KL S L R ++ + + F R+
Sbjct: 94 QIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALLLGTRSSMEPWVD-QLTQEFCERMR 152
Query: 160 ALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLL--NG 217
+G PV +++ S +T SII G K ED++V F + + +L +
Sbjct: 153 VQAGAPVTIQKEFSLLTCSIICYLTFGNK-------EDTLV--HAFHDCVQDLMKTWDHW 203
Query: 218 VLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDL 277
+ I D +P+L F G + +A++ + DH+ ++ K ++ +DM D
Sbjct: 204 SIQILDMVPFLRFFPNPGLWRLKQAIENR-----DHMVEKQLRRHKESMVAGQWRDMTDY 258
Query: 278 LLQ 280
+LQ
Sbjct: 259 MLQ 261
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 19/244 (7%)
Query: 50 LPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTY 109
LPH + K SQ YG+I L G VV ++ K+ L IFA RP T
Sbjct: 35 LPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMT- 93
Query: 110 NYLNLTWAPYGPYWRQGRKLYLSEL-FSSKRLESYQYIRVEEYRAFISRLYALSGKPVVL 168
L + YG W R+L ++ + +S++ +EE + F + G+P
Sbjct: 94 KMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDF 153
Query: 169 KEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIG------ 222
K+ ++ +I + + G+++ E +FQ M+ ELF N L
Sbjct: 154 KQLITNAVSNITNLIIFGERFTYEDT---------DFQHMI-ELFSENVELAASASVFLY 203
Query: 223 DWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMA 282
+ PW+ L + + + +D F + ++ NRK L +D + Q
Sbjct: 204 NAFPWIGILPFGKHQQLFRNAAVVYD-FLSRLIEKASVNRKPQLPQHFVDAYLDEMDQGK 262
Query: 283 DDPN 286
+DP+
Sbjct: 263 NDPS 266
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 19/244 (7%)
Query: 50 LPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTY 109
LPH + K SQ YG+I L G VV ++ K+ L IFA RP T
Sbjct: 35 LPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMT- 93
Query: 110 NYLNLTWAPYGPYWRQGRKLYLSEL-FSSKRLESYQYIRVEEYRAFISRLYALSGKPVVL 168
L + YG W R+L ++ + +S++ +EE + F + G+P
Sbjct: 94 KMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDF 153
Query: 169 KEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIG------ 222
K+ ++ +I + + G+++ E +FQ M+ ELF N L
Sbjct: 154 KQLITNAVSNITNLIIFGERFTYEDT---------DFQHMI-ELFSENVELAASASVFLY 203
Query: 223 DWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMA 282
+ PW+ L + + + +D F + ++ NRK L +D + Q
Sbjct: 204 NAFPWIGILPFGKHQQLFRNAAVVYD-FLSRLIEKASVNRKPQLPQHFVDAYLDEMDQGK 262
Query: 283 DDPN 286
+DP+
Sbjct: 263 NDPS 266
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 16/173 (9%)
Query: 30 KFPAGPKPWPIIGN-LNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
K P GP P P IGN L L + SL K+S++YG + + G VVV + K+ L
Sbjct: 10 KLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVKEAL 69
Query: 89 QTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQY--- 145
F+ R G+ T+++L + YG + G + FS L +
Sbjct: 70 VDQAEEFSGR-----GEQATFDWL---FKGYGVAFSNGERAKQLRRFSIATLRGFGVGKR 121
Query: 146 ---IRVEEYRAF-ISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSESK 194
R++E F I L G + LSR ++IS V G ++ E K
Sbjct: 122 GIEERIQEEAGFLIDALRGTHGANIDPTFFLSRTVSNVISSIVFGDRFDYEDK 174
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 30 KFPAGPKPWPIIGNL---NLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQ 86
K P GP P P++GNL + G L +S +L +KYG + + GS PVVV + ++
Sbjct: 10 KLPPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 87 FLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSEL--FSSKRLESYQ 144
L F+ R + A Y + +A G WR R+ L+ + F + +
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQGY-GVIFA-NGERWRALRRFSLATMRDFGMGKRSVEE 125
Query: 145 YIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
I+ EE R + L G + +T +II V GK++
Sbjct: 126 RIQ-EEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 30 KFPAGPKPWPIIGNL---NLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQ 86
K P GP P P++GNL + G L +S +L +KYG + + GS PVVV + ++
Sbjct: 10 KLPPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 87 FLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSEL--FSSKRLESYQ 144
L F+ R + A Y + +A G WR R+ L+ + F + +
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQGY-GVIFA-NGERWRALRRFSLATMRDFGMGKRSVEE 125
Query: 145 YIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
I+ EE R + L G + +T +II V GK++
Sbjct: 126 RIQ-EEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 30 KFPAGPKPWPIIGNL---NLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQ 86
K P GP P P++GNL + G L +S +L +KYG + + GS PVVV + ++
Sbjct: 10 KLPPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 87 FLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSEL--FSSKRLESYQ 144
L F+ R + A Y + +A G WR R+ L+ + F + +
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQGY-GVIFA-NGERWRALRRFSLATMRDFGMGKRSVEE 125
Query: 145 YIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
I+ EE R + L G + +T +II V GK++
Sbjct: 126 RIQ-EEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 30 KFPAGPKPWPIIGNL---NLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQ 86
K P GP P P++GNL + G L +S +L +KYG + + GS PVVV + ++
Sbjct: 10 KLPPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 87 FLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSEL--FSSKRLESYQ 144
L F+ R + A Y + +A G WR R+ L+ + F + +
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQGY-GVIFA-NGERWRALRRFSLATMRDFGMGKRSVEE 125
Query: 145 YIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
I+ EE R + L G + +T +II V GK++
Sbjct: 126 RIQ-EEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 30 KFPAGPKPWPIIGNL---NLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQ 86
K P GP P P++GNL + G L +S +L +KYG + + GS PVVV + ++
Sbjct: 10 KLPPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIRE 67
Query: 87 FLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSEL--FSSKRLESYQ 144
L F+ R + A Y + +A G WR R+ L+ + F + +
Sbjct: 68 ALVDQAEAFSGRGKIAVVDPIFQGY-GVIFA-NGERWRALRRFSLATMRDFGMGKRSVEE 125
Query: 145 YIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
I+ EE R + L G + +T +II V GK++
Sbjct: 126 RIQ-EEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 16/168 (9%)
Query: 30 KFPAGPKPWPIIGN-LNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
K P GP P P IGN L L + SL K+S++YG + + G VVV + ++ L
Sbjct: 10 KLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREAL 69
Query: 89 QTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQY--- 145
F+ R G+ T++++ + YG + G + FS L +
Sbjct: 70 VDQAEEFSGR-----GEQATFDWV---FKGYGVVFSNGERAKQLRRFSIATLRDFGVGKR 121
Query: 146 ---IRVEEYRAF-ISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
R++E F I L G + LSR ++IS V G ++
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRF 169
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 16/168 (9%)
Query: 30 KFPAGPKPWPIIGN-LNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
K P GP P P IGN L L + SL K+S++YG + + G VVV + ++ L
Sbjct: 10 KLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREAL 69
Query: 89 QTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQY--- 145
F+ R G+ T++++ + YG + G + FS L +
Sbjct: 70 VDQAEEFSGR-----GEQATFDWV---FKGYGVVFSNGERAKQLRRFSIATLRDFGVGKR 121
Query: 146 ---IRVEEYRAF-ISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
R++E F I L G + LSR ++IS V G ++
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRF 169
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 16/168 (9%)
Query: 30 KFPAGPKPWPIIGN-LNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
K P GP P P IGN L L + SL K+S++YG + + G VVV + ++ L
Sbjct: 10 KLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREAL 69
Query: 89 QTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQY--- 145
F+ R G+ T++++ + YG + G + FS L +
Sbjct: 70 VDQAEEFSGR-----GEQATFDWV---FKGYGVVFSNGERAKQLRRFSIATLRDFGVGKR 121
Query: 146 ---IRVEEYRAF-ISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
R++E F I L G + LSR ++IS V G ++
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRF 169
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 16/168 (9%)
Query: 30 KFPAGPKPWPIIGN-LNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
K P GP P P IGN L L + SL K+S++YG + + G VVV + ++ L
Sbjct: 10 KLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREAL 69
Query: 89 QTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQY--- 145
F+ R G+ T++++ + YG + G + FS L +
Sbjct: 70 VDQAEEFSGR-----GEQATFDWV---FKGYGVVFSNGERAKQLRRFSIATLRDFGVGKR 121
Query: 146 ---IRVEEYRAF-ISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
R++E F I L G + LSR ++IS V G ++
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRF 169
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 16/168 (9%)
Query: 30 KFPAGPKPWPIIGN-LNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
K P GP P P IGN L L + SL K+S++YG + + G VVV + ++ L
Sbjct: 10 KLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREAL 69
Query: 89 QTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQY--- 145
F+ R G+ T++++ + YG + G + FS L +
Sbjct: 70 VDQAEEFSGR-----GEQATFDWV---FKGYGVVFSNGERAKQLRRFSIATLRDFGVGKR 121
Query: 146 ---IRVEEYRAF-ISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
R++E F I L G + LSR ++IS V G ++
Sbjct: 122 GIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRF 169
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 112/272 (41%), Gaps = 28/272 (10%)
Query: 30 KFPAGPKPWPIIGN-LNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
K P GP P+PIIGN L + +SL K S+ YG + + G P VV E K+ L
Sbjct: 10 KLPPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAVKEAL 69
Query: 89 QTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSEL--FSSKRLESYQYI 146
FA R + + L + ++ W++ R+ L L F + I
Sbjct: 70 VDLGEEFAGRGSVPILEKVSKG-LGIAFS-NAKTWKEMRRFSLMTLRNFGMGKRSIEDRI 127
Query: 147 RVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQ 206
+ EE R + L + P L ++I + ++ + K E+ + +E
Sbjct: 128 Q-EEARCLVEELRKTNASPCDPTFILGCAPCNVICSVIFHNRF--DYKDEEFLKLMESLH 184
Query: 207 EMLDELFLLNGVLNIGDWIPWL----DFLDLQGYVKRM-KALKKKFDRFHDHVFDEHKAN 261
E ++ L PWL +F L Y + K L K D + + ++ K +
Sbjct: 185 ENVELL-----------GTPWLQVYNNFPALLDYFPGIHKTLLKNADYIKNFIMEKVKEH 233
Query: 262 RKGNLKDF-VPKDMVDL-LLQMADDPNLDVKL 291
+K L D P+D +D L++M + NL+ L
Sbjct: 234 QK--LLDVNNPRDFIDCFLIKMEQENNLEFTL 263
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 104/249 (41%), Gaps = 24/249 (9%)
Query: 43 NLNLIGPLP--------HQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHI 94
+L L+G LP H + KL +KYG I ++ G+ V+ ++AK+ L
Sbjct: 15 SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKD 74
Query: 95 FASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSE--LFSSKRLESYQYIRVEEYR 152
F+ RPQ A + N + +A G +W+ R+L ++ LF + + I +E
Sbjct: 75 FSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGD-QKLEKIICQEIS 133
Query: 153 AFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQE-MLDE 211
L +G+ + + + ++IS Y + + ++ + E ++D
Sbjct: 134 TLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSY---KNGDPELNVIQNYNEGIIDN 190
Query: 212 LFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVP 271
L ++ D +PWL K ++ LK + + + ++ N K +
Sbjct: 191 L----SKDSLVDLVPWLKIFP----NKTLEKLKSHV-KIRNDLLNKILENYKEKFRSDSI 241
Query: 272 KDMVDLLLQ 280
+M+D L+Q
Sbjct: 242 TNMLDTLMQ 250
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 19/255 (7%)
Query: 30 KFPAGPKPWPIIGNLNLIGPLP-HQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
K P GP P PIIGN+ I +S S+ YG + + FG P+VV E K+ L
Sbjct: 10 KLPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKEAL 69
Query: 89 QTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRV 148
+ F+ R + + T ++ G W++ R+ L+ L + + RV
Sbjct: 70 IDNGEEFSGRGNSPISQRITKGLGIISSN--GKRWKEIRRFSLTTLRNFGMGKRSIEDRV 127
Query: 149 -EEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQE 207
EE + L P L ++I V K++ + K ++ + ++ F E
Sbjct: 128 QEEAHCLVEELRKTKASPCDPTFILGCAPCNVICSVVFQKRF--DYKDQNFLTLMKRFNE 185
Query: 208 MLDELFLLNGV-LNIGDWIPWL--DFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKG 264
+LN + + + P L F V + AL + + R EH+A+
Sbjct: 186 ---NFRILNSPWIQVCNNFPLLIDCFPGTHNKVLKNVALTRSYIR---EKVKEHQASLDV 239
Query: 265 NLKDFVPKDMVDLLL 279
N P+D +D L
Sbjct: 240 N----NPRDFIDCFL 250
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 4/162 (2%)
Query: 30 KFPAGPKPWPIIGNLNLIGPLP-HQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
K P GP P P+IGN+ IG +SL LS+ YG + L FG P+VV E K+ L
Sbjct: 11 KLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEAL 70
Query: 89 QTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRV 148
F+ R + + + ++ G W++ R+ L L + + RV
Sbjct: 71 IDLGEEFSGRGIFPLAERANRGF-GIVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDRV 128
Query: 149 -EEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
EE R + L P L ++I + K++
Sbjct: 129 QEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRF 170
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 4/160 (2%)
Query: 32 PAGPKPWPIIGNLNLIGPLP-HQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQT 90
P GP P P+IGN+ IG +SL LS+ YG + L FG P+VV E K+ L
Sbjct: 11 PPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALID 70
Query: 91 HDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRV-E 149
F+ R + + + ++ G W++ R+ L L + + RV E
Sbjct: 71 LGEEFSGRGIFPLAERANRGF-GIVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQE 128
Query: 150 EYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
E R + L P L ++I + K++
Sbjct: 129 EARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRF 168
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 17/210 (8%)
Query: 57 KLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYN--YLNL 114
+L +++G + L+ PVVV ++ L TH A RP + + +
Sbjct: 38 QLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGV 97
Query: 115 TWAPYGPYWRQGRKLYLSEL----FSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKE 170
A YGP WR+ R+ +S L K LE Q++ EE + SG+P
Sbjct: 98 FLARYGPAWREQRRFSVSTLRNLGLGKKSLE--QWV-TEEAACLCAAFANHSGRPFRPNG 154
Query: 171 HLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQEML-DELFLLNGVLNIGDWIPWLD 229
L + ++I+ G+++ E + L+ QE L +E L VLN +P L
Sbjct: 155 LLDKAVSNVIASLTCGRRF--EYDDPRFLRLLDLAQEGLKEESGFLREVLNA---VPVL- 208
Query: 230 FLDLQGYVKRMKALKKKFDRFHDHVFDEHK 259
L + ++ +K F D + EH+
Sbjct: 209 -LHIPALAGKVLRFQKAFLTQLDELLTEHR 237
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 57 KLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYN--YLNL 114
+L +++G + L+ PVVV ++ L TH A RP + + +
Sbjct: 38 QLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGV 97
Query: 115 TWAPYGPYWRQGRKLYLSEL----FSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKE 170
A YGP WR+ R+ +S L K LE Q++ EE + SG+P
Sbjct: 98 FLARYGPAWREQRRFSVSTLRNLGLGKKSLE--QWV-TEEAACLCAAFANHSGRPFRPNG 154
Query: 171 HLSRVTLSIISRTVLGKKY 189
L + ++I+ G+++
Sbjct: 155 LLDKAVSNVIASLTCGRRF 173
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 4/162 (2%)
Query: 30 KFPAGPKPWPIIGNLNLIGPLP-HQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
K P GP P P+IGN+ I +SL LS+ YG + L FG +VV E+ K+ L
Sbjct: 11 KLPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEAL 70
Query: 89 QTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRV 148
F+ R + + + ++ G W++ R+ L L + + RV
Sbjct: 71 IDLGEEFSGRGHFPLAERANRGF-GIVFS-NGKRWKEIRRFSLMTLRNFGMGKRSIEDRV 128
Query: 149 -EEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKY 189
EE R + L P L ++I + K++
Sbjct: 129 QEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFQKRF 170
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 109/282 (38%), Gaps = 70/282 (24%)
Query: 34 GPKPWPIIGNLNLIGPLPHQSLHK--------LSQKYGQIMQLKFGSFPVVVAASAEMAK 85
GP P P +GN+ S HK +KYG++ G PV+ +M K
Sbjct: 19 GPTPLPFLGNI--------LSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIK 70
Query: 86 QFLQTHDH-IFASRPQTAAGKHTTYNYLNLTWAPYGPY--------------WRQGRKLY 130
L + +F +R P+GP W++ R L
Sbjct: 71 TVLVKECYSVFTNR------------------RPFGPVGFMKSAISIAEDEEWKRLRSL- 111
Query: 131 LSELFSSKRLESYQYIRVEEYRAFISRLY--ALSGKPVVLKEHLSRVTLSIISRTVLGKK 188
LS F+S +L+ I + + L A +GKPV LK+ ++ +I+ T G
Sbjct: 112 LSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVN 171
Query: 189 YFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDW---IPWLDFLDLQGYVKRMKA-LK 244
S + +D V E +++L FL L+I + IP L+ L++ + + + L+
Sbjct: 172 IDSLNNPQDPFV--ENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLR 229
Query: 245 KKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPN 286
K R + ++ + +R VD L M D N
Sbjct: 230 KSVKRMKESRLEDTQKHR------------VDFLQLMIDSQN 259
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 109/282 (38%), Gaps = 70/282 (24%)
Query: 34 GPKPWPIIGNLNLIGPLPHQSLHK--------LSQKYGQIMQLKFGSFPVVVAASAEMAK 85
GP P P +GN+ S HK +KYG++ G PV+ +M K
Sbjct: 18 GPTPLPFLGNI--------LSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIK 69
Query: 86 QFLQTHDH-IFASRPQTAAGKHTTYNYLNLTWAPYGPY--------------WRQGRKLY 130
L + +F +R P+GP W++ R L
Sbjct: 70 TVLVKECYSVFTNR------------------RPFGPVGFMKSAISIAEDEEWKRLRSL- 110
Query: 131 LSELFSSKRLESYQYIRVEEYRAFISRLY--ALSGKPVVLKEHLSRVTLSIISRTVLGKK 188
LS F+S +L+ I + + L A +GKPV LK+ ++ +I+ T G
Sbjct: 111 LSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVN 170
Query: 189 YFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDW---IPWLDFLDLQGYVKRMKA-LK 244
S + +D V E +++L FL L+I + IP L+ L++ + + + L+
Sbjct: 171 IDSLNNPQDPFV--ENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLR 228
Query: 245 KKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPN 286
K R + ++ + +R VD L M D N
Sbjct: 229 KSVKRMKESRLEDTQKHR------------VDFLQLMIDSQN 258
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 109/282 (38%), Gaps = 70/282 (24%)
Query: 34 GPKPWPIIGNLNLIGPLPHQSLHK--------LSQKYGQIMQLKFGSFPVVVAASAEMAK 85
GP P P +GN+ S HK +KYG++ G PV+ +M K
Sbjct: 20 GPTPLPFLGNI--------LSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIK 71
Query: 86 QFLQTHDH-IFASRPQTAAGKHTTYNYLNLTWAPYGPY--------------WRQGRKLY 130
L + +F +R P+GP W++ R L
Sbjct: 72 TVLVKECYSVFTNR------------------RPFGPVGFMKSAISIAEDEEWKRLRSL- 112
Query: 131 LSELFSSKRLESYQYIRVEEYRAFISRLY--ALSGKPVVLKEHLSRVTLSIISRTVLGKK 188
LS F+S +L+ I + + L A +GKPV LK+ ++ +I+ T G
Sbjct: 113 LSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVN 172
Query: 189 YFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDW---IPWLDFLDLQGYVKRMKA-LK 244
S + +D V E +++L FL L+I + IP L+ L++ + + + L+
Sbjct: 173 IDSLNNPQDPFV--ENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLR 230
Query: 245 KKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPN 286
K R + ++ + +R VD L M D N
Sbjct: 231 KSVKRMKESRLEDTQKHR------------VDFLQLMIDSQN 260
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 30 KFPAGPKPWPIIGNLNL--IGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQF 87
K P GP P PIIGNL + +P +S +L+Q++G + L GS +VV + K+
Sbjct: 10 KLPPGPFPLPIIGNLFQLELKNIP-KSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEA 68
Query: 88 LQTHDHIFASR---PQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSEL 134
L + F+ R P A + + N GP W+ R+ L+ L
Sbjct: 69 LLDYKDEFSGRGDLPAFHAHRDRGIIFNN------GPTWKDIRRFSLTTL 112
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 34 GPKPWPIIGNLNLI---GPLP--HQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFL 88
GP WP++G+L I G L H +L + +KYGQI ++K GSF V S + +
Sbjct: 28 GPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALY 87
Query: 89 QT---HDHIFASRPQTAAGKHTTYNY 111
+T H +P A H Y
Sbjct: 88 RTESAHPQRLEIKPWKAYRDHRNEAY 113
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 134 LFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSES 193
L +L SY I +E+ RA IS L + KPV K S++T++ I R + K +F+ S
Sbjct: 833 LTEKAKLNSYAPISLEKRRAQISALLTMLQKPVTFKS--SKITINDILRDI--KPFFTVS 888
Query: 194 KA 195
A
Sbjct: 889 DA 890
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 134 LFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSES 193
L +L SY I +E+ RA IS L + KPV K S++T++ I R + K +F+ S
Sbjct: 833 LTEKAKLNSYAPISLEKRRAQISALLTMLQKPVTFKS--SKITINDILRDI--KPFFTVS 888
Query: 194 KA 195
A
Sbjct: 889 DA 890
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 134 LFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSES 193
L +L SY I +E+ RA IS L + KPV K S++T++ I R + K +F+ S
Sbjct: 839 LTEKAKLNSYAPISLEKRRAQISALLTMLQKPVTFKS--SKITINDILRDI--KPFFTVS 894
Query: 194 KA 195
A
Sbjct: 895 DA 896
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 5/139 (3%)
Query: 53 QSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYNYL 112
+S + +KYG + + G PVV+ E ++ L F+ R + A Y
Sbjct: 34 KSFLRFREKYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGKIAMVDPFFRGY- 92
Query: 113 NLTWAPYGPYWRQGRKLYLSEL--FSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKE 170
+ +A G W+ R+ ++ + F + + I+ EE + I L G +
Sbjct: 93 GVIFA-NGNRWKVLRRFSVTTMRDFGMGKRSVEERIQ-EEAQCLIEELRKSKGALMDPTF 150
Query: 171 HLSRVTLSIISRTVLGKKY 189
+T +II V GK++
Sbjct: 151 LFQSITANIICSIVFGKRF 169
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 134 LFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLK 169
L+S K LE YI + F+ +Y L KPVVL+
Sbjct: 57 LWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLR 92
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 134 LFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLK 169
L+S K LE YI + F+ +Y L KPVVL+
Sbjct: 66 LWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLR 101
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 134 LFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLK 169
L+S K LE YI + F+ +Y L KPVVL+
Sbjct: 63 LWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLR 98
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 145 YIRVEEYRAFISRLYALSGKPV--VLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTL 202
YI EE + +Y + GK VLKE R + + + + K +D IVTL
Sbjct: 105 YINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKM--------DKNKDGIVTL 156
Query: 203 EEFQEMLDE 211
+EF E E
Sbjct: 157 DEFLESCQE 165
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 145 YIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFS-ESKAEDSIVTLE 203
YI +E ++ +Y + G V L E + + + KK F K ED +TL+
Sbjct: 115 YITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRV-------KKIFKLMDKNEDGYITLD 167
Query: 204 EFQE 207
EF+E
Sbjct: 168 EFRE 171
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 90 THDHIFASRPQTAA---GKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLE 141
T ++ AS+PQ A N +NL + P + +L LS+++SSK L+
Sbjct: 400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 145 YIRVEEYRAFISRLYALSGKPV--VLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTL 202
YI EE + +Y + GK VLKE R + + + + K +D IVTL
Sbjct: 141 YINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKM--------DKNKDGIVTL 192
Query: 203 EEFQEMLDE 211
+EF E E
Sbjct: 193 DEFLESCQE 201
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 145 YIRVEEYRAFISRLYALSGKPV--VLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTL 202
YI EE + +Y + GK VLKE R + + + + K +D IVTL
Sbjct: 108 YINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKM--------DKNKDGIVTL 159
Query: 203 EEFQEMLDE 211
+EF E E
Sbjct: 160 DEFLESXQE 168
>pdb|4I99|C Chain C, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
pdb|4I99|D Chain D, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
Length = 87
Score = 27.7 bits (60), Expect = 8.9, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 148 VEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQE 207
VEE + ++Y +G P+ + + V II+RT L F E+ I+ E F E
Sbjct: 23 VEELYKVVKKIYEKTGTPIKFWDLVPDVEPKIIARTFL-YLLFLENMGRVEIIQEEPFGE 81
Query: 208 ML 209
+L
Sbjct: 82 IL 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,674,766
Number of Sequences: 62578
Number of extensions: 343328
Number of successful extensions: 846
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 44
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)