Query 036271
Match_columns 301
No_of_seqs 121 out of 1211
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 19:02:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 1.6E-35 5.6E-40 274.7 20.3 262 26-299 4-277 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 1.1E-33 3.7E-38 262.9 17.2 264 26-300 5-284 (507)
3 3e6i_A CYPIIE1, P450-J, cytoch 100.0 6.3E-32 2.1E-36 249.1 21.9 259 26-300 6-272 (476)
4 3qz1_A Steroid 21-hydroxylase; 100.0 6.5E-33 2.2E-37 257.1 13.9 254 26-300 25-284 (496)
5 2hi4_A Cytochrome P450 1A2; CY 100.0 5.9E-32 2E-36 251.0 18.2 260 28-300 12-287 (495)
6 3czh_A Cytochrome P450 2R1; vi 100.0 6.4E-32 2.2E-36 249.9 17.2 261 27-300 9-278 (481)
7 3s79_A Cytochrome P450 19A1; o 100.0 4.4E-32 1.5E-36 251.9 16.0 252 27-300 42-300 (503)
8 3tbg_A Cytochrome P450 2D6; mo 100.0 3.4E-31 1.2E-35 244.3 21.1 263 26-300 6-277 (479)
9 2fdv_A Cytochrome P450 2A6; CY 100.0 1.8E-31 6.1E-36 246.5 19.0 260 26-300 6-273 (476)
10 1po5_A Cytochrome P450 2B4; ox 100.0 4.4E-31 1.5E-35 243.9 19.3 260 26-300 6-273 (476)
11 1r9o_A Cytochrome P450 2C9; mo 100.0 4.1E-31 1.4E-35 244.1 17.8 260 26-300 7-274 (477)
12 3nxu_A Cytochrome P450 3A4; al 100.0 1.8E-31 6E-36 246.8 13.2 252 30-300 14-277 (485)
13 3gw9_A Sterol 14alpha-demethyl 100.0 3.7E-31 1.3E-35 242.2 13.0 254 29-300 2-258 (450)
14 3k9v_A 1,25-dihydroxyvitamin D 100.0 5.4E-30 1.8E-34 236.4 18.9 254 28-300 22-288 (482)
15 3ld6_A Lanosterol 14-alpha dem 100.0 5.6E-30 1.9E-34 235.6 12.2 246 30-300 11-257 (461)
16 2ij2_A Cytochrome P450 BM3; mo 100.0 1.4E-28 4.9E-33 226.9 20.1 252 30-300 3-258 (470)
17 3i3k_A Lanosterol 14-alpha dem 100.0 1.3E-28 4.5E-33 226.3 12.3 249 26-300 7-257 (461)
18 3n9y_A Cholesterol SIDE-chain 100.0 2.1E-27 7.2E-32 219.5 18.4 257 29-300 8-280 (487)
19 2ve3_A Putative cytochrome P45 100.0 1.7E-27 5.9E-32 218.0 16.6 240 27-300 9-248 (444)
20 2cib_A Cytochrome P450 51; hem 99.9 3.6E-27 1.2E-31 216.6 17.1 245 30-300 4-250 (455)
21 3dbg_A Putative cytochrome P45 99.9 1.8E-27 6.2E-32 219.2 9.2 243 30-300 23-268 (467)
22 2cd8_A Cytochrome P450 monooxy 99.9 6.7E-26 2.3E-30 207.1 15.5 231 26-300 22-257 (436)
23 3v8d_A Cholesterol 7-alpha-mon 99.9 1.8E-26 6.3E-31 213.7 5.0 245 26-299 9-261 (491)
24 3mdm_A Cholesterol 24-hydroxyl 99.9 9.7E-24 3.3E-28 193.5 20.7 232 48-299 9-247 (456)
25 1jfb_A Nitric-oxide reductase 99.9 1.6E-23 5.5E-28 189.4 19.7 225 31-300 2-234 (404)
26 1izo_A P450bsbeta, cytochrome 99.9 6.2E-23 2.1E-27 186.3 19.4 228 35-298 5-235 (417)
27 1cpt_A Cytochrome P450-TERP; o 99.9 1.5E-23 5.2E-28 191.0 15.3 239 28-300 4-261 (428)
28 1ued_A P450 OXYC, P450 monooxy 99.9 6.3E-23 2.2E-27 185.7 17.5 220 29-300 9-239 (406)
29 3awm_A Fatty acid alpha-hydrox 99.9 9.9E-23 3.4E-27 184.8 18.5 228 32-298 4-234 (415)
30 2zbx_A Cytochrome P450-SU1; be 99.9 8.6E-22 2.9E-26 178.6 20.9 225 30-300 5-238 (412)
31 3dax_A Cytochrome P450 7A1; ch 99.9 3.8E-23 1.3E-27 191.2 7.3 162 26-191 9-177 (491)
32 2zwu_A Camphor 5-monooxygenase 99.9 1.4E-21 4.8E-26 177.3 16.9 225 26-300 7-243 (415)
33 3aba_A Cytochrome P450; oxidor 99.9 2.4E-20 8.1E-25 168.6 21.4 220 33-300 6-231 (403)
34 3b6h_A Prostacyclin synthase; 99.9 5.2E-22 1.8E-26 184.0 10.5 161 25-192 13-178 (498)
35 3oo3_A OXY protein; cytochrome 99.9 1.7E-20 5.9E-25 168.4 19.1 206 48-300 11-220 (384)
36 3abb_A CYP105D6, cytochrome P4 99.9 6.9E-21 2.3E-25 172.4 16.0 209 46-300 21-237 (408)
37 1s1f_A Putative cytochrome P45 99.9 5.6E-21 1.9E-25 172.9 15.4 222 29-300 7-236 (406)
38 1n97_A CYP175A1; electron tran 99.9 2.6E-22 9E-27 180.6 6.5 148 33-190 2-150 (389)
39 3ivy_A Cytochrome P450 CYP125; 99.9 1E-20 3.4E-25 172.6 16.2 231 27-300 15-262 (433)
40 3tyw_A Putative cytochrome P45 99.9 3.4E-20 1.2E-24 168.3 19.3 208 48-300 28-243 (417)
41 3tkt_A Cytochrome P450; aromat 99.8 1.6E-20 5.4E-25 172.2 16.1 220 51-300 47-283 (450)
42 1odo_A Putative cytochrome P45 99.8 1.3E-20 4.5E-25 170.5 13.9 214 46-300 12-236 (408)
43 2jjn_A Cytochrome P450 113A1; 99.8 2.6E-20 9.1E-25 168.7 15.5 206 50-300 29-235 (411)
44 2wm5_A CYP124, putative cytoch 99.8 1.4E-19 4.8E-24 165.1 19.6 213 49-300 44-268 (435)
45 3a4g_A Vitamin D hydroxylase; 99.8 7.7E-20 2.6E-24 165.7 17.5 208 47-300 18-230 (411)
46 3ejb_B Biotin biosynthesis cyt 99.8 1.1E-19 3.7E-24 164.2 18.1 212 49-300 13-228 (404)
47 4fb2_A P450CIN; heme, monooxyg 99.8 8.2E-20 2.8E-24 164.7 16.8 207 47-300 17-226 (398)
48 2y5n_A MYCG, P-450-like protei 99.8 1.3E-19 4.6E-24 164.4 18.2 208 47-300 35-248 (417)
49 1z8o_A 6-deoxyerythronolide B 99.8 1.5E-19 5.2E-24 163.4 16.9 209 47-300 12-235 (404)
50 2z36_A MOXA, cytochrome P450 t 99.8 1.6E-19 5.4E-24 163.7 16.1 209 47-300 20-239 (413)
51 1gwi_A CYP154C1, cytochrome P4 99.8 3.2E-19 1.1E-23 161.6 16.2 210 46-300 14-236 (411)
52 3b98_A Prostaglandin I2 syntha 99.8 1.6E-20 5.6E-25 172.7 7.8 155 26-188 14-174 (475)
53 2xkr_A CYP142, putative cytoch 99.8 9.2E-19 3.1E-23 157.9 18.8 207 48-300 17-224 (398)
54 2uuq_A CYP130, cytochrome P450 99.8 5E-19 1.7E-23 160.5 17.1 208 49-300 25-244 (414)
55 1q5d_A P450 epoxidase; cytochr 99.8 2.1E-19 7E-24 163.2 13.9 214 47-300 24-248 (419)
56 3lxh_A Cytochrome P450; heme, 99.8 1E-18 3.5E-23 158.7 16.8 229 31-300 13-250 (421)
57 3r9b_A Cytochrome P450 164A2; 99.8 3.9E-19 1.3E-23 161.3 13.7 215 48-300 28-250 (418)
58 2z3t_A Cytochrome P450; monoxy 99.8 9.4E-19 3.2E-23 159.2 15.2 212 49-300 20-248 (425)
59 2xbk_A PIMD protein; epoxidati 99.8 5.3E-18 1.8E-22 153.2 18.4 201 48-300 25-235 (404)
60 2dkk_A Cytochrome P450; CYP158 99.8 1.7E-18 5.9E-23 156.8 14.7 206 48-300 26-239 (411)
61 3nc3_A Cytochrome P450 CYPX; c 99.8 1.3E-18 4.4E-23 159.1 13.7 210 49-300 53-263 (441)
62 3dsk_A Cytochrome P450 74A, ch 99.8 5.6E-19 1.9E-23 163.5 11.0 162 28-192 26-206 (495)
63 3oft_A Cytochrome P450, CYP101 99.8 3.4E-18 1.2E-22 154.0 15.4 205 48-300 23-228 (396)
64 1lfk_A OXYB, P450 monooxygenas 99.8 4E-18 1.4E-22 153.7 15.2 200 55-300 19-230 (398)
65 3mgx_A Putative P450 monooxyge 99.8 3.3E-18 1.1E-22 155.1 13.2 206 49-300 37-248 (415)
66 3buj_A CALO2; heme, iron, meta 99.8 5.7E-18 2E-22 152.6 12.7 208 49-300 13-227 (397)
67 3dan_A Cytochrome P450 74A2; A 99.7 2.7E-17 9.2E-22 151.2 14.5 160 29-191 8-187 (473)
68 3rwl_A Cytochrome P450 alkane 99.7 1.3E-16 4.6E-21 145.0 18.4 213 48-300 37-259 (426)
69 1n40_A P450 MT2, cytochrome P4 99.7 3.4E-17 1.2E-21 147.5 11.7 204 48-300 15-227 (396)
70 3p3o_A Cytochrome P450; monoox 99.7 1.2E-17 4.3E-22 151.3 6.3 211 48-300 32-247 (416)
71 2wiy_A XPLA-heme, cytochrome P 99.7 9.8E-16 3.3E-20 137.9 15.5 207 50-300 21-227 (394)
72 3b4x_A 367AA long hypothetical 99.7 2.4E-16 8.3E-21 140.5 10.6 193 51-300 1-204 (367)
73 1io7_A Cytochrome P450 CYP119; 99.6 6.4E-16 2.2E-20 137.8 10.2 192 51-299 1-202 (368)
74 2rfb_A Cytochrome P450; heme, 99.6 1.5E-15 5E-20 134.2 10.9 113 60-189 2-115 (343)
75 4dnj_A Putative cytochrome P45 99.4 1.8E-12 6.1E-17 117.2 14.0 145 35-185 17-168 (412)
76 4dxy_A Cytochrome P450, CYP101 99.4 1.7E-11 5.8E-16 111.0 18.3 211 49-300 37-249 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.2 4.6E-09 1.6E-13 93.6 -11.4 133 31-190 35-180 (381)
78 2diu_A KIAA0430 protein; struc 92.2 0.27 9.2E-06 33.9 5.1 59 41-100 14-76 (96)
79 2krb_A Eukaryotic translation 84.4 3.7 0.00012 26.7 6.5 59 40-98 5-75 (81)
80 3lqv_A PRE-mRNA branch site pr 84.3 4.6 0.00016 28.2 7.5 66 31-98 3-75 (115)
81 1iqt_A AUF1, heterogeneous nuc 82.4 3.2 0.00011 26.4 5.5 58 40-99 3-69 (75)
82 1s79_A Lupus LA protein; RRM, 81.2 4.1 0.00014 28.2 6.0 58 40-99 15-80 (103)
83 4f25_A Polyadenylate-binding p 79.0 4.6 0.00016 28.4 5.8 58 40-99 9-74 (115)
84 2mss_A Protein (musashi1); RNA 78.0 5.6 0.00019 25.1 5.6 58 40-99 3-69 (75)
85 2dgs_A DAZ-associated protein 76.9 13 0.00046 24.9 7.6 58 40-99 14-80 (99)
86 4fxv_A ELAV-like protein 1; RN 75.6 5.9 0.0002 27.0 5.4 58 40-99 23-90 (99)
87 2cph_A RNA binding motif prote 74.3 14 0.00048 25.1 7.2 59 39-99 18-88 (107)
88 2wbr_A GW182, gawky, LD47780P; 73.3 9.1 0.00031 25.8 5.6 61 37-99 8-72 (89)
89 1whx_A Hypothetical protein ri 73.2 15 0.0005 25.5 7.1 59 40-100 14-76 (111)
90 3ns6_A Eukaryotic translation 72.3 7.9 0.00027 26.3 5.4 58 40-97 10-81 (100)
91 2kvi_A Nuclear polyadenylated 72.2 12 0.00041 25.0 6.3 58 40-99 14-74 (96)
92 2nlw_A Eukaryotic translation 71.4 13 0.00046 25.3 6.5 60 39-98 18-89 (105)
93 3beg_B Splicing factor, argini 70.8 16 0.00054 25.5 6.8 58 40-99 20-80 (115)
94 3ex7_B RNA-binding protein 8A; 70.4 17 0.00057 25.7 7.0 59 40-100 26-94 (126)
95 1p27_B RNA-binding protein 8A; 68.4 16 0.00054 24.8 6.4 58 40-99 27-94 (106)
96 2dnz_A Probable RNA-binding pr 68.4 21 0.00072 23.5 6.9 61 38-100 7-77 (95)
97 3mdf_A Peptidyl-prolyl CIS-tra 68.0 20 0.00067 23.0 6.5 59 38-98 9-77 (85)
98 4a8x_A RNA-binding protein wit 67.2 17 0.00058 23.5 6.1 58 40-99 8-76 (88)
99 2adc_A Polypyrimidine tract-bi 67.0 16 0.00056 28.9 7.0 58 40-99 38-101 (229)
100 1whw_A Hypothetical protein ri 66.1 21 0.00071 23.8 6.5 58 40-99 12-79 (99)
101 2dgx_A KIAA0430 protein; RRM d 65.9 18 0.00061 24.2 6.1 58 40-99 13-81 (96)
102 1sjr_A Polypyrimidine tract-bi 65.9 24 0.00082 26.7 7.2 55 40-96 50-110 (164)
103 2hvz_A Splicing factor, argini 65.8 13 0.00046 25.0 5.5 58 40-99 4-66 (101)
104 2rs2_A Musashi-1, RNA-binding 65.2 15 0.00051 25.4 5.7 59 39-99 28-95 (109)
105 3s8s_A Histone-lysine N-methyl 64.6 14 0.00047 25.7 5.4 59 39-99 9-77 (110)
106 2x1f_A MRNA 3'-END-processing 64.4 20 0.00067 23.8 6.1 58 40-99 6-73 (96)
107 1oo0_B CG8781-PA, drosophila Y 64.3 20 0.00068 24.5 6.2 58 40-99 30-97 (110)
108 2dgu_A Heterogeneous nuclear r 64.0 20 0.00067 24.3 6.1 59 39-99 14-74 (103)
109 3md1_A Nuclear and cytoplasmic 63.9 13 0.00045 23.8 5.0 58 40-99 5-72 (83)
110 3ucg_A Polyadenylate-binding p 63.6 11 0.00038 24.6 4.6 58 40-99 10-76 (89)
111 2fy1_A RNA-binding motif prote 63.6 21 0.00071 24.9 6.3 59 39-99 10-77 (116)
112 2pe8_A Splicing factor 45; RRM 63.1 11 0.00036 26.1 4.5 68 33-100 5-86 (105)
113 3s7r_A Heterogeneous nuclear r 62.0 13 0.00044 24.2 4.6 58 39-98 14-80 (87)
114 2cqc_A Arginine/serine-rich sp 62.0 19 0.00065 23.7 5.6 60 37-98 16-85 (95)
115 2kxn_B Transformer-2 protein h 61.9 40 0.0014 24.0 8.5 60 38-99 48-117 (129)
116 2la6_A RNA-binding protein FUS 61.7 31 0.0011 22.9 6.7 58 40-99 17-92 (99)
117 2jvo_A Nucleolar protein 3; nu 61.7 18 0.00061 24.9 5.5 58 40-99 35-94 (108)
118 2dgt_A RNA-binding protein 30; 61.6 22 0.00076 23.3 5.9 58 40-99 14-73 (92)
119 1uaw_A Mouse-musashi-1; RNP-ty 61.5 11 0.00039 23.7 4.2 58 40-99 4-70 (77)
120 3bs9_A Nucleolysin TIA-1 isofo 61.4 14 0.00049 23.9 4.8 57 40-98 10-76 (87)
121 1x4g_A Nucleolysin TIAR; struc 60.8 25 0.00087 23.9 6.2 58 40-99 29-90 (109)
122 2jvr_A Nucleolar protein 3; RN 60.7 20 0.0007 25.0 5.7 58 40-99 32-96 (111)
123 2cq3_A RNA-binding protein 9; 60.6 32 0.0011 23.0 6.7 59 39-99 18-84 (103)
124 2do4_A Squamous cell carcinoma 60.4 27 0.00093 23.3 6.2 60 38-99 19-87 (100)
125 2dh8_A DAZ-associated protein 60.4 12 0.00041 25.4 4.4 59 39-99 19-86 (105)
126 2dgv_A HnRNP M, heterogeneous 60.1 33 0.0011 22.3 6.7 58 40-99 12-77 (92)
127 2d9p_A Polyadenylate-binding p 60.0 31 0.0011 23.1 6.5 64 34-99 13-84 (103)
128 2e5h_A Zinc finger CCHC-type a 59.8 27 0.00093 22.9 6.1 58 38-97 18-85 (94)
129 1x5u_A Splicing factor 3B subu 59.7 37 0.0012 22.8 7.9 58 40-99 19-86 (105)
130 2dnm_A SRP46 splicing factor; 59.6 21 0.00071 24.0 5.5 58 40-99 17-84 (103)
131 2dnp_A RNA-binding protein 14; 59.3 34 0.0011 22.3 7.0 60 38-99 11-72 (90)
132 2dgo_A Cytotoxic granule-assoc 58.9 20 0.0007 24.7 5.5 58 40-99 19-86 (115)
133 2xnq_A Nuclear polyadenylated 58.9 33 0.0011 22.9 6.4 57 40-98 26-85 (97)
134 1nu4_A U1A RNA binding domain; 58.9 30 0.001 22.8 6.3 61 39-99 11-80 (97)
135 1x4c_A Splicing factor, argini 58.8 25 0.00087 24.0 5.9 56 40-97 19-77 (108)
136 3s6e_A RNA-binding protein 39; 58.7 13 0.00045 26.1 4.4 68 32-99 3-84 (114)
137 3zzy_A Polypyrimidine tract-bi 58.5 17 0.00057 26.4 5.0 65 31-97 21-93 (130)
138 2a3j_A U1 small nuclear ribonu 58.5 20 0.00067 25.8 5.4 60 40-99 33-101 (127)
139 3p5t_L Cleavage and polyadenyl 58.1 15 0.00051 24.2 4.4 58 40-99 5-74 (90)
140 3v4m_A Splicing factor U2AF 65 57.9 19 0.00064 24.8 5.0 47 54-100 31-89 (105)
141 2cqi_A Nucleolysin TIAR; RNA r 57.5 26 0.00088 23.6 5.7 59 39-99 18-84 (103)
142 2err_A Ataxin-2-binding protei 57.4 14 0.00049 25.4 4.4 58 40-99 33-98 (109)
143 2div_A TRNA selenocysteine ass 56.8 30 0.001 22.9 6.0 63 35-99 8-81 (99)
144 1p1t_A Cleavage stimulation fa 56.7 27 0.00091 23.4 5.7 57 40-98 12-78 (104)
145 2la4_A Nuclear and cytoplasmic 56.7 30 0.001 23.1 5.9 58 40-99 31-92 (101)
146 2jwn_A Embryonic polyadenylate 56.2 16 0.00055 25.7 4.6 58 40-99 40-106 (124)
147 2cq4_A RNA binding motif prote 56.2 18 0.00063 24.9 4.8 57 40-98 29-94 (114)
148 2cpf_A RNA binding motif prote 56.2 32 0.0011 22.7 6.0 59 39-99 8-79 (98)
149 2ywk_A Putative RNA-binding pr 56.2 23 0.00078 23.3 5.2 58 40-99 20-86 (95)
150 2cqd_A RNA-binding region cont 56.2 26 0.00089 24.2 5.7 58 40-99 21-87 (116)
151 2dnq_A RNA-binding protein 4B; 56.1 39 0.0013 21.9 6.4 59 39-99 11-71 (90)
152 1x5p_A Negative elongation fac 56.0 26 0.00087 23.3 5.4 56 40-99 19-78 (97)
153 2cpi_A CCR4-NOT transcription 55.9 9.4 0.00032 26.5 3.2 60 38-99 17-92 (111)
154 2e5j_A Methenyltetrahydrofolat 55.9 38 0.0013 22.4 6.3 58 40-99 23-85 (97)
155 1wg5_A Heterogeneous nuclear r 55.5 26 0.00089 23.7 5.5 58 40-99 19-85 (104)
156 2cpj_A Non-POU domain-containi 55.3 19 0.00065 24.1 4.7 58 40-99 19-80 (99)
157 2i2y_A Fusion protein consists 55.0 46 0.0016 24.1 7.2 58 40-99 77-139 (150)
158 2kn4_A Immunoglobulin G-bindin 55.0 48 0.0017 24.2 7.4 58 40-99 74-141 (158)
159 2jrs_A RNA-binding protein 39; 54.7 39 0.0013 23.0 6.4 58 40-99 30-97 (108)
160 1rk8_A CG8781-PA, CG8781-PA pr 54.6 26 0.00091 26.1 5.8 58 40-99 76-143 (165)
161 1x4b_A Heterogeneous nuclear r 54.5 14 0.00049 25.6 4.0 58 40-99 31-97 (116)
162 2dnh_A Bruno-like 5, RNA bindi 53.7 35 0.0012 22.9 5.9 57 39-97 18-83 (105)
163 2lea_A Serine/arginine-rich sp 53.6 30 0.001 24.9 5.8 58 40-99 51-118 (135)
164 2cjk_A Nuclear polyadenylated 53.2 29 0.001 25.4 5.9 58 40-99 91-157 (167)
165 1h2v_Z 20 kDa nuclear CAP bind 52.9 26 0.00089 25.8 5.5 59 39-99 42-110 (156)
166 3d2w_A TAR DNA-binding protein 52.7 31 0.0011 22.7 5.3 51 35-87 10-64 (89)
167 2bz2_A Negative elongation fac 52.6 29 0.00099 24.5 5.4 56 40-99 43-102 (121)
168 1x4e_A RNA binding motif, sing 52.6 25 0.00085 22.6 4.8 62 35-98 4-75 (85)
169 2cpz_A CUG triplet repeat RNA- 52.5 45 0.0015 22.9 6.4 58 40-99 29-96 (115)
170 1why_A Hypothetical protein ri 52.4 47 0.0016 21.9 7.9 57 38-96 19-79 (97)
171 1u6f_A Tcubp1, RNA-binding pro 52.4 31 0.0011 24.7 5.7 58 40-99 46-113 (139)
172 3n9u_C Cleavage and polyadenyl 52.0 29 0.00098 25.8 5.6 58 40-99 59-128 (156)
173 2dhg_A TRNA selenocysteine ass 51.8 50 0.0017 22.0 7.5 65 34-100 7-82 (104)
174 3ulh_A THO complex subunit 4; 51.2 28 0.00095 23.5 5.1 58 40-99 33-99 (107)
175 2cqb_A Peptidyl-prolyl CIS-tra 50.9 30 0.001 23.1 5.2 61 37-99 13-83 (102)
176 2voo_A Lupus LA protein; RNA-b 50.8 19 0.00067 27.8 4.6 58 40-99 113-178 (193)
177 1wi8_A EIF-4B, eukaryotic tran 50.6 31 0.0011 23.2 5.2 65 32-99 11-85 (104)
178 3ue2_A Poly(U)-binding-splicin 50.3 25 0.00087 24.8 4.7 66 35-100 19-101 (118)
179 2hzc_A Splicing factor U2AF 65 50.0 39 0.0013 21.6 5.5 57 40-98 10-80 (87)
180 1whv_A Poly(A)-specific ribonu 50.0 34 0.0012 23.5 5.0 38 52-89 29-67 (100)
181 2j76_E EIF-4B, EIF4B, eukaryot 50.0 30 0.001 23.2 5.0 57 40-99 23-89 (100)
182 2cqg_A TDP-43, TAR DNA-binding 49.8 33 0.0011 23.0 5.2 58 39-99 18-84 (103)
183 2dis_A Unnamed protein product 49.2 58 0.002 21.9 6.5 58 40-99 12-83 (109)
184 2khc_A Testis-specific RNP-typ 48.9 23 0.0008 24.5 4.4 57 40-98 44-110 (118)
185 2ki2_A SS-DNA binding protein 48.6 23 0.0008 23.0 4.2 57 40-99 5-71 (90)
186 1wf1_A RNA-binding protein RAL 47.7 36 0.0012 23.1 5.3 58 40-99 31-91 (110)
187 1x5s_A Cold-inducible RNA-bind 47.5 59 0.002 21.5 7.1 60 38-99 14-83 (102)
188 2qfj_A FBP-interacting repress 47.3 58 0.002 25.0 7.0 58 40-99 32-99 (216)
189 1l3k_A Heterogeneous nuclear r 47.0 27 0.00091 26.5 4.9 58 40-99 108-174 (196)
190 3pgw_S U1-70K; protein-RNA com 47.0 31 0.0011 30.7 5.8 59 39-99 105-173 (437)
191 1l3k_A Heterogeneous nuclear r 46.8 30 0.001 26.1 5.2 58 40-99 17-83 (196)
192 2ytc_A PRE-mRNA-splicing facto 46.6 53 0.0018 20.8 6.9 58 39-98 15-77 (85)
193 1fxl_A Paraneoplastic encephal 46.1 36 0.0012 24.8 5.4 58 40-99 6-73 (167)
194 2do0_A HnRNP M, heterogeneous 46.1 35 0.0012 23.3 5.0 59 39-99 18-85 (114)
195 2cq0_A Eukaryotic translation 45.9 19 0.00065 24.3 3.4 58 40-99 19-86 (103)
196 3tyt_A Heterogeneous nuclear r 45.7 42 0.0014 26.1 5.9 58 39-99 7-71 (205)
197 2cpd_A Apobec-1 stimulating pr 45.6 57 0.0019 21.5 5.9 59 39-99 18-80 (99)
198 1sjq_A Polypyrimidine tract-bi 45.5 61 0.0021 22.3 6.0 63 36-100 16-84 (105)
199 2d9o_A DNAJ (HSP40) homolog, s 45.2 65 0.0022 21.8 6.1 47 52-99 31-81 (100)
200 2kt5_A RNA and export factor-b 44.8 75 0.0026 22.0 7.8 58 40-99 39-105 (124)
201 2e5g_A U6 snRNA-specific termi 44.8 50 0.0017 21.6 5.5 58 40-99 12-73 (94)
202 2f3j_A RNA and export factor b 44.5 77 0.0026 23.9 7.1 58 40-99 92-158 (177)
203 2cpe_A RNA-binding protein EWS 44.4 38 0.0013 23.1 5.0 58 40-99 19-94 (113)
204 3md3_A Nuclear and cytoplasmic 42.8 39 0.0013 24.6 5.1 58 40-99 4-70 (166)
205 2xs2_A Deleted in azoospermia- 42.2 15 0.00051 24.8 2.4 57 40-99 13-77 (102)
206 2dgp_A Bruno-like 4, RNA bindi 41.6 76 0.0026 21.1 7.0 49 40-90 17-74 (106)
207 2e5i_A Heterogeneous nuclear r 41.0 79 0.0027 22.5 6.2 55 41-97 30-89 (124)
208 2ghp_A U4/U6 snRNA-associated 40.9 37 0.0013 27.8 5.1 60 39-100 44-110 (292)
209 1x4d_A Matrin 3; structural ge 40.4 55 0.0019 22.3 5.1 64 34-99 13-83 (102)
210 2dnr_A Synaptojanin-1; RRM dom 40.1 40 0.0014 22.7 4.1 67 33-99 3-77 (91)
211 1jmt_A Splicing factor U2AF 35 40.1 46 0.0016 22.7 4.7 40 60-99 49-97 (104)
212 2dha_A FLJ20171 protein; RRM d 40.1 25 0.00086 25.0 3.4 59 38-98 25-95 (123)
213 2ad9_A Polypyrimidine tract-bi 39.5 78 0.0027 22.3 5.9 62 37-100 32-99 (119)
214 1qm9_A Polypyrimidine tract-bi 39.4 75 0.0025 24.0 6.4 58 40-99 7-70 (198)
215 1fxl_A Paraneoplastic encephal 39.2 80 0.0027 22.7 6.4 57 40-98 92-158 (167)
216 2cpx_A Hypothetical protein FL 39.2 61 0.0021 22.0 5.4 60 38-99 27-96 (115)
217 2dit_A HIV TAT specific factor 37.6 83 0.0028 21.4 5.8 67 33-99 12-93 (112)
218 2cpy_A RNA-binding protein 12; 37.5 30 0.001 23.8 3.5 58 39-98 18-84 (114)
219 1b7f_A Protein (SXL-lethal pro 37.4 78 0.0027 22.9 6.1 58 40-99 7-74 (168)
220 4f02_A Polyadenylate-binding p 36.6 56 0.0019 25.3 5.3 58 39-98 18-85 (213)
221 2qfj_A FBP-interacting repress 36.3 74 0.0025 24.3 6.0 58 40-99 129-196 (216)
222 1x5t_A Splicing factor 3B subu 36.3 61 0.0021 21.1 4.8 58 40-99 9-77 (96)
223 1b7f_A Protein (SXL-lethal pro 36.1 77 0.0026 23.0 5.8 55 40-96 93-157 (168)
224 2lmi_A GRSF-1, G-rich sequence 36.1 45 0.0015 22.6 4.2 59 39-99 14-83 (107)
225 2dng_A Eukaryotic translation 36.0 46 0.0016 22.3 4.2 65 32-99 11-84 (103)
226 1ufw_A Synaptojanin 2; RNP dom 35.6 52 0.0018 22.3 4.1 67 33-99 11-86 (95)
227 3ctr_A Poly(A)-specific ribonu 35.4 18 0.00062 24.9 1.8 39 52-90 19-58 (101)
228 1x4f_A Matrin 3; structural ge 35.3 64 0.0022 22.5 4.8 63 36-100 25-94 (112)
229 2e44_A Insulin-like growth fac 35.1 92 0.0032 20.2 7.9 59 39-99 18-83 (96)
230 1x4a_A Splicing factor, argini 34.7 1E+02 0.0035 20.6 7.2 58 40-99 26-90 (109)
231 1x4h_A RNA-binding protein 28; 34.6 1E+02 0.0035 20.6 7.6 51 38-90 17-76 (111)
232 3q2s_C Cleavage and polyadenyl 34.5 54 0.0018 26.1 4.9 57 40-98 72-140 (229)
233 1x5o_A RNA binding motif, sing 34.3 74 0.0025 21.6 5.1 57 40-98 29-94 (114)
234 4f02_A Polyadenylate-binding p 33.5 72 0.0025 24.7 5.5 58 40-99 107-172 (213)
235 2cjk_A Nuclear polyadenylated 32.9 77 0.0026 23.0 5.4 49 40-90 7-64 (167)
236 1wf0_A TDP-43, TAR DNA-binding 32.2 56 0.0019 21.0 4.0 47 40-88 9-59 (88)
237 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.9 1.3E+02 0.0045 21.0 7.1 49 40-90 67-124 (140)
238 2g4b_A Splicing factor U2AF 65 31.8 77 0.0026 23.1 5.2 60 38-99 96-165 (172)
239 2lxi_A RNA-binding protein 10; 31.6 56 0.0019 21.4 3.9 58 40-99 5-74 (91)
240 1wez_A HnRNP H', FTP-3, hetero 31.5 42 0.0014 22.7 3.3 58 40-100 19-84 (102)
241 3r27_A HnRNP L, heterogeneous 31.5 1.2E+02 0.0042 20.5 6.6 54 35-90 20-76 (100)
242 2cq1_A PTB-like protein L; RRM 30.8 1.2E+02 0.004 20.4 5.5 60 38-99 17-82 (101)
243 1b35_D CRPV, protein (cricket 30.0 29 0.00098 20.2 1.8 27 37-63 30-56 (57)
244 3sde_A Paraspeckle component 1 28.9 1E+02 0.0035 24.7 5.8 58 40-99 26-87 (261)
245 2db1_A Heterogeneous nuclear r 28.9 31 0.0011 24.1 2.3 57 40-98 21-88 (118)
246 2hgn_A Heterogeneous nuclear r 28.5 81 0.0028 22.8 4.6 58 40-100 50-115 (139)
247 2dnn_A RNA-binding protein 12; 27.6 87 0.003 21.5 4.5 57 40-99 20-84 (109)
248 2ek1_A RNA-binding protein 12; 27.6 35 0.0012 22.3 2.3 58 40-99 19-86 (95)
249 2cq2_A Hypothetical protein LO 26.8 1.6E+02 0.0055 20.4 6.8 57 35-93 24-86 (114)
250 3nmr_A Cugbp ELAV-like family 26.8 1.1E+02 0.0039 22.1 5.4 49 40-90 99-155 (175)
251 2hgm_A HNRPF protein, heteroge 26.3 1.1E+02 0.0038 21.7 4.9 57 40-99 46-112 (126)
252 1wex_A Hypothetical protein (r 26.3 1.5E+02 0.0052 19.9 6.8 60 38-99 17-82 (104)
253 3pgw_A U1-A; protein-RNA compl 25.8 1.8E+02 0.006 23.4 6.8 39 52-90 221-263 (282)
254 2yh0_A Splicing factor U2AF 65 23.1 1.1E+02 0.0038 22.9 4.8 58 40-99 118-185 (198)
255 2g4b_A Splicing factor U2AF 65 22.6 1.4E+02 0.0048 21.6 5.2 58 40-99 8-79 (172)
256 2m2b_A RNA-binding protein 10; 22.5 1.6E+02 0.0054 20.6 5.2 58 40-100 27-100 (131)
257 2lkz_A RNA-binding protein 5; 22.3 94 0.0032 20.6 3.7 49 40-90 13-72 (95)
258 1wel_A RNA-binding protein 12; 22.2 57 0.002 22.7 2.7 57 40-98 29-94 (124)
259 3pgw_A U1-A; protein-RNA compl 21.9 1.5E+02 0.0051 23.8 5.6 61 39-99 12-81 (282)
260 2hgl_A HNRPF protein, heteroge 21.1 64 0.0022 23.3 2.8 57 40-98 48-115 (136)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=1.6e-35 Score=274.66 Aligned_cols=262 Identities=19% Similarity=0.301 Sum_probs=194.9
Q ss_pred cccCCCCCCCCCCccccccccCC--CCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCc
Q 036271 26 RRALKFPAGPKPWPIIGNLNLIG--PLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAA 103 (301)
Q Consensus 26 ~~~~~~ppgP~~~PllGnl~~~~--~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~ 103 (301)
++..++||||+++|++||++++. ..++..+.+|.++||+||++++|+.++|||+||++++|+|.+++..|++||....
T Consensus 4 ~~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~ 83 (494)
T 3swz_A 4 KTGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMAT 83 (494)
T ss_dssp --------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHH
T ss_pred CCCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHH
Confidence 44567899999999999999883 3578899999999999999999999999999999999999999999999987544
Q ss_pred ccceeccCcceeeCCCChhhHHHHHHHHHhhccH--HHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHH
Q 036271 104 GKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSS--KRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIIS 181 (301)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~--~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~ 181 (301)
......++.+++++++|+.|+.+||+++ +.|+. ..++.+.+++.++++.+++.+.+..|+++|+...+.++++|||+
T Consensus 84 ~~~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~t~dvi~ 162 (494)
T 3swz_A 84 LDIASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVIS 162 (494)
T ss_dssp HHHHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHHTTTEEECCHHHHHHHHHHHHH
T ss_pred HHHhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHH
Confidence 4433333446667778999999999995 77763 44677999999999999999976547899999999999999999
Q ss_pred HHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036271 182 RTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKAN 261 (301)
Q Consensus 182 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~ 261 (301)
+++||.++...+ +. . ..+......+........+.+++|+++++|. ...++.++..+.++.++.++++++++.
T Consensus 163 ~~~fG~~~~~~~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p~-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 235 (494)
T 3swz_A 163 LICFNTSYKNGD-PE-L----NVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEK 235 (494)
T ss_dssp HHHHSCCCCTTC-TH-H----HHHHHHHHHHHHHHCSSSSCCSSCGGGTSCC-SHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCcCCCCC-HH-H----HHHHHHHHHHHHhcccchHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999886544 22 1 3333444444444444456678899988864 334556677778888999999887654
Q ss_pred hcCCCCCCCCCCHHHHHhhcccCC--------CCcccCcccchhee
Q 036271 262 RKGNLKDFVPKDMVDLLLQMADDP--------NLDVKLNYDSVRGF 299 (301)
Q Consensus 262 ~~~~~~~~~~~d~ld~lL~~~~d~--------~~~~~lt~~~i~~~ 299 (301)
.. . ..+.|+++.||+...+. .++..+|+++|.+.
T Consensus 236 ~~--~--~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~ 277 (494)
T 3swz_A 236 FR--S--DSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTT 277 (494)
T ss_dssp CC--T--TCCCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHH
T ss_pred hc--c--cchhHHHHHHHHHHHhhhcccccccccccccCHHHHHHH
Confidence 32 1 12779999999842211 11235888888754
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=262.95 Aligned_cols=264 Identities=22% Similarity=0.377 Sum_probs=180.5
Q ss_pred cccCCCCCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCccc
Q 036271 26 RRALKFPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGK 105 (301)
Q Consensus 26 ~~~~~~ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~ 105 (301)
++..++||||+++|++||+.++.+.++..+.+|.++||+||++++|+.++|+|+||++++++|.+++..|.+|+......
T Consensus 5 ~~~~~~pPgP~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~ 84 (507)
T 3pm0_A 5 TSSKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFR 84 (507)
T ss_dssp -----------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHH
T ss_pred cCCCCCCcCCCCCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHH
Confidence 34457899999999999999887778999999999999999999999999999999999999999888999998654433
Q ss_pred ceeccCcceeeCCCChhhHHHHHHHHHhhccHHH------HhhhHHHHHHHHHHHHHHHHhhc--CCceehHHHHHHHHH
Q 036271 106 HTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKR------LESYQYIRVEEYRAFISRLYALS--GKPVVLKEHLSRVTL 177 (301)
Q Consensus 106 ~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~------l~~~~~~~~~~~~~l~~~l~~~~--g~~vd~~~~~~~~t~ 177 (301)
... ++.+++++.+|+.|+++||++. +.|+... ++.+.+.+.++++.+++.+.+.. +.++|+.+.+.++++
T Consensus 85 ~~~-~g~~l~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~ 162 (507)
T 3pm0_A 85 VVS-GGRSMAFGHYSEHWKVQRRAAH-SMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVA 162 (507)
T ss_dssp HGG-GGTCSSSSCSSHHHHHHHHHHH-HHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHHHH
T ss_pred hhc-CCCceEECCCChHHHHHHHHHH-HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHHHH
Confidence 332 3345667778999999999995 6654322 34488999999999999998754 678999999999999
Q ss_pred HHHHHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhcccccccccc--chHHHHHHHHHHHHHHHHHHH
Q 036271 178 SIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQ--GYVKRMKALKKKFDRFHDHVF 255 (301)
Q Consensus 178 ~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~--~~~~~~~~~~~~~~~~~~~~I 255 (301)
|+|++++||.++...+ .+ . ..+.+.+..++.........+++|+++++|.. ...++..+..+.+.+++.++|
T Consensus 163 dvi~~~~fG~~~~~~~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i 236 (507)
T 3pm0_A 163 NVMSAVCFGCRYSHDD-PE-F----RELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKF 236 (507)
T ss_dssp HHHHHHHTSCCCCTTC-HH-H----HHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCC-HH-H----HHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986544 22 1 33444455555544444456778988887532 124556677788889999999
Q ss_pred HHHHhhhcCCCCCCCCCCHHHHHhhcccCC-C-----CcccCcccchheec
Q 036271 256 DEHKANRKGNLKDFVPKDMVDLLLQMADDP-N-----LDVKLNYDSVRGFT 300 (301)
Q Consensus 256 ~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~-~-----~~~~lt~~~i~~~~ 300 (301)
+++++... .+. .++|+++.||+...+. + .+..+|+++|.+.+
T Consensus 237 ~~~~~~~~-~~~--~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~ 284 (507)
T 3pm0_A 237 LRHCESLR-PGA--APRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATI 284 (507)
T ss_dssp HHHHHHCC-TTC--CCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHH
T ss_pred HHHHhccc-ccc--CCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHH
Confidence 99887643 222 2789999999732211 1 12259999987643
No 3
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=100.00 E-value=6.3e-32 Score=249.14 Aligned_cols=259 Identities=20% Similarity=0.282 Sum_probs=191.4
Q ss_pred cccCCCCCCCCCCccccccccC-CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcc
Q 036271 26 RRALKFPAGPKPWPIIGNLNLI-GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAG 104 (301)
Q Consensus 26 ~~~~~~ppgP~~~PllGnl~~~-~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~ 104 (301)
++..++||||+++|++||++++ ...++..+.+|.++||+||++++|+.++|+|+||++++++|.+++..|++|+.....
T Consensus 6 ~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~ 85 (476)
T 3e6i_A 6 SSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAF 85 (476)
T ss_dssp ----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGG
T ss_pred cCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchh
Confidence 3455789999999999999998 567889999999999999999999999999999999999999988889988765443
Q ss_pred cceeccCcceeeCCCChhhHHHHHHHHHhhccHHHH--hhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHH
Q 036271 105 KHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRL--ESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISR 182 (301)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~ 182 (301)
.... + . +++..+|+.|+++||++. +.|+...+ ..+.+.++++++.+++.+.+..|+++|+.+.+.++++|||++
T Consensus 86 ~~~~-~-~-~l~~~~g~~w~~~Rr~~~-~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~dvi~~ 161 (476)
T 3e6i_A 86 HAHR-D-R-GIIFNNGPTWKDIRRFSL-TTLRNYGMGKQGNESRIQREAHFLLEALRKTQGQPFDPTFLIGCAPCNVIAD 161 (476)
T ss_dssp GGGT-T-S-SSTTCCSTTHHHHHHHHH-HHHHHTC-CCSHHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHTHHHHHHHHH
T ss_pred heec-C-C-CEEecCCcHHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCcChHHHHHHHHHHHHHH
Confidence 3332 2 2 455667999999999875 56654332 346789999999999999765577999999999999999999
Q ss_pred HHhCccccCCCccchhhhhHHHHHHHHHHHHHhhccc--ccchhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 036271 183 TVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVL--NIGDWIP-WLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHK 259 (301)
Q Consensus 183 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 259 (301)
++||.+++..+. + . ..+...+.+.+...... .+.+.+| +++++| +..++..+..+.+.+++.+.|++++
T Consensus 162 ~~fG~~~~~~~~-~-~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~lp--~~~~~~~~~~~~~~~~~~~~i~~~~ 233 (476)
T 3e6i_A 162 ILFRKHFDYNDE-K-F----LRLMYLFNENFHLLSTPWLQLYNNFPSFLHYLP--GSHRKVIKNVAEVKEYVSERVKEHH 233 (476)
T ss_dssp HHHSCCCCTTCH-H-H----HHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTSC--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCCH-H-H----HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999875442 1 1 34444555544433221 1234566 666664 3345566778888999999999988
Q ss_pred hhhcCCCCCCCCCCHHHHHhhcccCC--CCcccCcccchheec
Q 036271 260 ANRKGNLKDFVPKDMVDLLLQMADDP--NLDVKLNYDSVRGFT 300 (301)
Q Consensus 260 ~~~~~~~~~~~~~d~ld~lL~~~~d~--~~~~~lt~~~i~~~~ 300 (301)
+..+ .+ .++|+++.||+...++ +++..+|+++|.+.+
T Consensus 234 ~~~~--~~--~~~d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~ 272 (476)
T 3e6i_A 234 QSLD--PN--CPRDLTDCLLVEMEKEKHSAERLYTMDGITVTV 272 (476)
T ss_dssp HTCC--TT--SCCSHHHHHHHHHHSSSSCSSCSCCHHHHHHHH
T ss_pred hcCC--CC--CCccHHHHHHHHHHhcccCCCCCcCHHHHHHHH
Confidence 7643 11 2679999999743222 123468999887643
No 4
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=100.00 E-value=6.5e-33 Score=257.12 Aligned_cols=254 Identities=22% Similarity=0.261 Sum_probs=188.2
Q ss_pred cccCCCCCCCCCCccccccccC-CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcc
Q 036271 26 RRALKFPAGPKPWPIIGNLNLI-GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAG 104 (301)
Q Consensus 26 ~~~~~~ppgP~~~PllGnl~~~-~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~ 104 (301)
++..++||||++ ++++ .+.++..+.+|.++||||+++++|+.++|+|+||+++++++.+++..|++|+.....
T Consensus 25 ~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~ 98 (496)
T 3qz1_A 25 LRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSY 98 (496)
T ss_dssp ----CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTTT
T ss_pred ccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcchH
Confidence 455689999987 4454 567899999999999999999999999999999999999999998899999876544
Q ss_pred cceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHHH
Q 036271 105 KHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTV 184 (301)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~~ 184 (301)
.....+..++++++||+.|+++||+++ +.|+.+.++.+.+.++++++++++.+.+..|+++|+.+.+.++++|||++++
T Consensus 99 ~~~~~~~~~l~~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~dvi~~~~ 177 (496)
T 3qz1_A 99 KLVSQRCQDISLGDYSLLWKAHKKLTR-SALLLGTRSSMEPWVDQLTQEFCERMRVQAGAPVTIQKEFSLLTCSIICYLT 177 (496)
T ss_dssp TTSCTTCCCSSSSCCSHHHHHHHHHHH-HHHHC--CCCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHTHHHHHHTTTTS
T ss_pred HHhcCCCCceEECCCCHHHHHHHHHHH-HHHhhccHhhHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHh
Confidence 433333235666666999999999995 7888767788999999999999999987447899999999999999999999
Q ss_pred hCccccCCCccchhhhhHHHHHHHHHHHHHhhcc--cccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036271 185 LGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGV--LNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANR 262 (301)
Q Consensus 185 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ 262 (301)
||. . ++ .. . ..+.+.+...+..... ..+.+++|+++++|. +..++..+..+.+++++.++|+++++..
T Consensus 178 fG~-~--~~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 247 (496)
T 3qz1_A 178 FGN-K--ED-TL-V----HAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPN-PGLWRLKQAIENRDHMVEKQLRRHKESM 247 (496)
T ss_dssp TTC-C--CH-HH-H----HHHHHHHHTTTTTTSSHHHHHHHHCGGGCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCC-C--CC-hH-H----HHHHHHHHHHHHHhccchhHHHHhHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 998 1 11 11 1 3444445444433222 234567898888864 3345677788889999999999988764
Q ss_pred cCCCCCCCCCCHHHHHhhcccCC--CCc-ccCcccchheec
Q 036271 263 KGNLKDFVPKDMVDLLLQMADDP--NLD-VKLNYDSVRGFT 300 (301)
Q Consensus 263 ~~~~~~~~~~d~ld~lL~~~~d~--~~~-~~lt~~~i~~~~ 300 (301)
+ .+ .++|+++.|++...+. +++ ..+|+++|.+.+
T Consensus 248 ~--~~--~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~ 284 (496)
T 3qz1_A 248 V--AG--QWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSV 284 (496)
T ss_dssp C--SS--CCSSSHHHHTTSSTTCCC-----CCCTHHHHHHH
T ss_pred c--CC--CccchHHHHHHHHHhccccCCcccccHHHHHHHH
Confidence 3 11 2789999999843221 112 269999887643
No 5
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.98 E-value=5.9e-32 Score=250.97 Aligned_cols=260 Identities=22% Similarity=0.347 Sum_probs=191.5
Q ss_pred cCCCC--CCCCCCccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCccc
Q 036271 28 ALKFP--AGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGK 105 (301)
Q Consensus 28 ~~~~p--pgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~ 105 (301)
..++| |||+++|++||+.++.+.++..+.+|.++||||+++++|+.++|+++||+++++++.+++..|++|+......
T Consensus 12 ~~~lp~~PgP~~~p~~G~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~ 91 (495)
T 2hi4_A 12 PKGLKSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTST 91 (495)
T ss_dssp CTTCBCCCCCCCBTTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHH
T ss_pred CCCCCCCCCCCCCcceeeHHhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHH
Confidence 34455 9999999999998876678889999999999999999999999999999999999998877898887543222
Q ss_pred ceeccCcceeeC-CCChhhHHHHHHHHHhhccH---HHH---h---hhHHHHHHHHHHHHHHHHhhc--CCceehHHHHH
Q 036271 106 HTTYNYLNLTWA-PYGPYWRQGRKLYLSELFSS---KRL---E---SYQYIRVEEYRAFISRLYALS--GKPVVLKEHLS 173 (301)
Q Consensus 106 ~~~~~~~~~~~~-~~g~~Wk~~Rk~l~~~~f~~---~~l---~---~~~~~~~~~~~~l~~~l~~~~--g~~vd~~~~~~ 173 (301)
... ++.+++++ ++|+.|+++||++. +.|+. .++ + .+.+.+.++++.+++.|.+.+ |+++|+.+.+.
T Consensus 92 ~~~-~~~~l~~~~~~g~~w~~~Rr~~~-~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~ 169 (495)
T 2hi4_A 92 LIT-DGQSLTFSTDSGPVWAARRRLAQ-NALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVV 169 (495)
T ss_dssp TST-TSCCTTTSSCCSHHHHHHHHHHH-HHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHH
T ss_pred Hhc-CCCCEEEcCCCChHHHHHHHHHH-HHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHH
Confidence 222 22344554 47999999999995 66542 222 1 688999999999999998732 67899999999
Q ss_pred HHHHHHHHHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHH
Q 036271 174 RVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDH 253 (301)
Q Consensus 174 ~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (301)
++++|||++++||.+++..+ .+ . ..+.+.+.+++...+.....+++|+++++|. ...++..+..+.+.+++.+
T Consensus 170 ~~~~dvi~~~~fG~~~~~~~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~-~~~~~~~~~~~~~~~~~~~ 242 (495)
T 2hi4_A 170 VSVANVIGAMCFGQHFPESS-DE-M----LSLVKNTHEFVETASSGNPLDFFPILRYLPN-PALQRFKAFNQRFLWFLQK 242 (495)
T ss_dssp HHHHHHHHHHHHGGGSCTTC-HH-H----HHHHTTTHHHHTTSSTTCGGGTCGGGGGSCC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCC-HH-H----HHHHHHHHHHHHhcccchHHHHhHHHHhcCc-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886433 11 1 3344444555543332234567888877753 2344566778888999999
Q ss_pred HHHHHHhhhcCCCCCCCCCCHHHHHhhcccCC--CCcccCcccchheec
Q 036271 254 VFDEHKANRKGNLKDFVPKDMVDLLLQMADDP--NLDVKLNYDSVRGFT 300 (301)
Q Consensus 254 ~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~--~~~~~lt~~~i~~~~ 300 (301)
+|+++++..+ .. .++|+++.||+...+. +++..+|+++|.+.+
T Consensus 243 ~i~~r~~~~~--~~--~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 287 (495)
T 2hi4_A 243 TVQEHYQDFD--KN--SVRDITGALFKHSKKGPRASGNLIPQEKIVNLV 287 (495)
T ss_dssp HHHHHHHTCC--TT--CCCSHHHHHHHHHHHCCEETTEECCTHHHHTHH
T ss_pred HHHHHHHhhc--cc--ccccHHHHHHHHhhhccCccccCCCHHHHHHHH
Confidence 9999887532 11 2679999999632221 123469999987654
No 6
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.98 E-value=6.4e-32 Score=249.93 Aligned_cols=261 Identities=23% Similarity=0.396 Sum_probs=193.0
Q ss_pred ccCCCCCCCCCCccccccccC-CCC--chHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCc
Q 036271 27 RALKFPAGPKPWPIIGNLNLI-GPL--PHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAA 103 (301)
Q Consensus 27 ~~~~~ppgP~~~PllGnl~~~-~~~--~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~ 103 (301)
+..++||||+++|++||+.++ ... ++..+.+|.++||||+++++|+.++|+|+||+.+++++.+++..|++|+....
T Consensus 9 ~~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~ 88 (481)
T 3czh_A 9 RPMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPL 88 (481)
T ss_dssp ---CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHH
T ss_pred CCCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHH
Confidence 345789999999999999877 332 78899999999999999999999999999999999999988878988875332
Q ss_pred ccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHH--hhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHH
Q 036271 104 GKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRL--ESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIIS 181 (301)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~ 181 (301)
...+. +..+++++.+|+.|+++||++. +.|+...+ +.+.+.++++++.+++.+.+..|+++|+.+.+.++++|+|+
T Consensus 89 ~~~~~-~~~~~~~~~~g~~w~~~R~~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~vi~ 166 (481)
T 3czh_A 89 FMKMT-KMGGLLNSRYGRGWVDHRRLAV-NSFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNITN 166 (481)
T ss_dssp HHHHH-TTCSSTTCCSSHHHHHHHHHHH-HHHHHTTTTSTTHHHHHHHHHHHHHHHHHTTTTCCBCCHHHHHHHHHHHHH
T ss_pred HHhhc-CCCCeEeCCCChHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHH
Confidence 22222 2234455678999999999995 78875443 57899999999999999986446789999999999999999
Q ss_pred HHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccc--cchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 036271 182 RTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLN--IGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHK 259 (301)
Q Consensus 182 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 259 (301)
+++||.+++..+ .+ . .++.+.+.+.+...+... +.+++|+++++|.. ..++..+..+.+.+++.++|++++
T Consensus 167 ~~~fG~~~~~~~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~~-~~~~~~~~~~~~~~~~~~~i~~r~ 239 (481)
T 3czh_A 167 LIIFGERFTYED-TD-F----QHMIELFSENVELAASASVFLYNAFPWIGILPFG-KHQQLFRNAAVVYDFLSRLIEKAS 239 (481)
T ss_dssp HHHHSSCCCTTC-HH-H----HHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCC-HH-H----HHHHHHHHHHHhhhccchhHHhhhhHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999886433 22 1 444455555554332211 34567888776532 345566777888999999999987
Q ss_pred hhhcCCCCCCCCCCHHHHHhhcccC-C-CCcccCcccchheec
Q 036271 260 ANRKGNLKDFVPKDMVDLLLQMADD-P-NLDVKLNYDSVRGFT 300 (301)
Q Consensus 260 ~~~~~~~~~~~~~d~ld~lL~~~~d-~-~~~~~lt~~~i~~~~ 300 (301)
+..+ .. .++|+++.||+...+ + +++..+|+++|.+.+
T Consensus 240 ~~~~--~~--~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~ 278 (481)
T 3czh_A 240 VNRK--PQ--LPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSV 278 (481)
T ss_dssp TTCC--TT--CCSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHH
T ss_pred HhcC--CC--chHHHHHHHHHHHHhcccCccccccHHHHHHHH
Confidence 6532 11 267999999974221 1 123469999987654
No 7
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.98 E-value=4.4e-32 Score=251.95 Aligned_cols=252 Identities=15% Similarity=0.143 Sum_probs=179.8
Q ss_pred ccCCCCCCCCCCccccccccCCC----CchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC
Q 036271 27 RALKFPAGPKPWPIIGNLNLIGP----LPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA 102 (301)
Q Consensus 27 ~~~~~ppgP~~~PllGnl~~~~~----~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~ 102 (301)
+..+.||||+++|++||+.++.. .++..+.+|+++||||+++++|+.++|+++||++++++|.+ ..|++|+...
T Consensus 42 ~~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~ 119 (503)
T 3s79_A 42 EGTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSK 119 (503)
T ss_dssp ---CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCH
T ss_pred hccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhh
Confidence 34578999999999999987632 34567889999999999999999999999999999999954 4688886533
Q ss_pred cc-cceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc--CCceehHHHHHHHHHHH
Q 036271 103 AG-KHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS--GKPVVLKEHLSRVTLSI 179 (301)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~--g~~vd~~~~~~~~t~~i 179 (301)
.. ......+.+++++.+|+.|+++||+++ ++|++..++.+.+.+.++++++++.+.+.. ++++|+.+.++++++|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~v 198 (503)
T 3s79_A 120 LGLQCIGMHEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDT 198 (503)
T ss_dssp HHHHHHTCTTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHH
T ss_pred hhhhhhccCCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHH
Confidence 22 212223346667788999999999995 899999999999999999999999987643 57899999999999999
Q ss_pred HHHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 036271 180 ISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHK 259 (301)
Q Consensus 180 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 259 (301)
+++++||.+++ + .+ . .+.+.+.+......... .++++.+.|+ .++..+..+.+++++.++|++++
T Consensus 199 i~~~~fG~~~~--~-~~-~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~ 263 (503)
T 3s79_A 199 SNTLFLRIPLD--E-SA-I---VVKIQGYFDAWQALLIK---PDIFFKISWL-----YKKYEKSVKDLKDAIEVLIAEKR 263 (503)
T ss_dssp HHHHHTCCCCC--H-HH-H---HHHHHHHHHHHHHHTTC---CHHHHHSGGG-----THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccC--c-hh-H---HHHHHHHHHHHHHHhcC---cHHHhhcchh-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999874 1 11 0 12222333322222111 1222112222 24556677888999999999988
Q ss_pred hhhcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 260 ANRKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 260 ~~~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+..+.+.......|+++.|++.. + +..+|+++|.+.+
T Consensus 264 ~~~~~~~~~~~~~d~l~~ll~~~-~---~~~l~~~~i~~~~ 300 (503)
T 3s79_A 264 RRISTEEKLEECMDFATELILAE-K---RGDLTRENVNQCI 300 (503)
T ss_dssp HHHHTCTTTTTTCCHHHHHHHHH-H---TTSSCHHHHHHHH
T ss_pred HHhhcccccchHHHHHHHHHHhc-c---cCCCCHHHHHHHH
Confidence 76542221122569999999842 2 1258988887643
No 8
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.98 E-value=3.4e-31 Score=244.31 Aligned_cols=263 Identities=20% Similarity=0.316 Sum_probs=184.6
Q ss_pred cccCCCCCCCCCCccccccccC-CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcc
Q 036271 26 RRALKFPAGPKPWPIIGNLNLI-GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAG 104 (301)
Q Consensus 26 ~~~~~~ppgP~~~PllGnl~~~-~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~ 104 (301)
+++.++||||+++|+|||++++ .+.++..+.+|+++|||||++++|+.++|+|+||++++++|.+++..|++|+.....
T Consensus 6 ss~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~ 85 (479)
T 3tbg_A 6 SSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT 85 (479)
T ss_dssp ---CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGG
T ss_pred CCCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHH
Confidence 3445799999999999999987 567888999999999999999999999999999999999999999999999876655
Q ss_pred cceecc--CcceeeCCCChhhHHHHHHHHHhhccHHHHh--hhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHH
Q 036271 105 KHTTYN--YLNLTWAPYGPYWRQGRKLYLSELFSSKRLE--SYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSII 180 (301)
Q Consensus 105 ~~~~~~--~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~--~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii 180 (301)
..+..+ ..+++++.+|+.|+++|+++. +.|++..+. .+...+......+...+....++++|+.+.+.++++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (479)
T 3tbg_A 86 QILGFGPRSQGVFLARYGPAWREQRRFSV-STLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVI 164 (479)
T ss_dssp GGGTCBTTBCCSTTCCSSHHHHHHHHHHH-HHHHHTTSTTCHHHHHHHHHHHHHHHHHHTTTTCCBCTHHHHHHHHHHHH
T ss_pred HHhccCCCCCceeeCCCCHHHHHHHHHHH-HHhcchhhhHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Confidence 443322 235677888999999999985 677655543 345566667777777776554788999999999999999
Q ss_pred HHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhccc--ccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 036271 181 SRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVL--NIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEH 258 (301)
Q Consensus 181 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 258 (301)
++++||.+++..+... ..+.+............ ......|+..++ ....++.....+...+.+.+.++++
T Consensus 165 ~~~~fg~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (479)
T 3tbg_A 165 ASLTCGRRFEYDDPRF------LRLLDLAQEGLKEESGFLREVLNAVPVLLHI--PALAGKVLRFQKAFLTQLDELLTEH 236 (479)
T ss_dssp HHHHHSCCCCTTCHHH------HHHHHHHHHHHHTTSSHHHHHHHHSGGGGGS--HHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCcccccchhh------hhhhhhhhhhhhhhhhhhhhhhcccchhccc--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997655221 33333333333222111 111223433333 2223344555666777788888777
Q ss_pred HhhhcCCCCCCCCCCHHHHHhhcc--cCCCCcccCcccchheec
Q 036271 259 KANRKGNLKDFVPKDMVDLLLQMA--DDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 259 ~~~~~~~~~~~~~~d~ld~lL~~~--~d~~~~~~lt~~~i~~~~ 300 (301)
.+..+. . ..++|+++.++... .+.+++..+|++++.+.+
T Consensus 237 ~~~~~~-~--~~~~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 277 (479)
T 3tbg_A 237 RMTWDP-A--QPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVV 277 (479)
T ss_dssp HHHCCT-T--SCCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHH
T ss_pred HHhhhc-c--cccchhhhhhhhhhhhcccCCccchhhHHHHHHH
Confidence 665431 2 23778888876532 222334579999987654
No 9
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.98 E-value=1.8e-31 Score=246.50 Aligned_cols=260 Identities=20% Similarity=0.269 Sum_probs=192.0
Q ss_pred cccCCCCCCCCCCccccccccC-CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcc
Q 036271 26 RRALKFPAGPKPWPIIGNLNLI-GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAG 104 (301)
Q Consensus 26 ~~~~~~ppgP~~~PllGnl~~~-~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~ 104 (301)
++..++||||+++|++||+.++ ...++..+.+|.++||||+++++|+.++|+++||+.+++++.+++..|++|+.....
T Consensus 6 ~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~ 85 (476)
T 2fdv_A 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATF 85 (476)
T ss_dssp --CCBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHH
T ss_pred cccCCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHH
Confidence 4445689999999999999988 567889999999999999999999999999999999999998877788887653322
Q ss_pred cceeccCcceeeCCCChhhHHHHHHHHHhhccHHHH--hhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHH
Q 036271 105 KHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRL--ESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISR 182 (301)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~ 182 (301)
.... ++.++ +..+|+.|+++||++. +.|+...+ +.+.+.+.++++.+++.+.+..|+++|+.+.+.++++|||++
T Consensus 86 ~~~~-~~~~l-~~~~g~~~~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~vi~~ 162 (476)
T 2fdv_A 86 DWVF-KGYGV-VFSNGERAKQLRRFSI-ATLRDFGVGKRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISS 162 (476)
T ss_dssp HHHH-TTCSS-SSCCHHHHHHHHHHHH-HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHH
T ss_pred hhhc-CCCCe-EecCchHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHHHHH
Confidence 2222 22344 4557999999999985 78877655 679999999999999999764467899999999999999999
Q ss_pred HHhCccccCCCccchhhhhHHHHHHHHHHHHHhhccc--ccchhccc-cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 036271 183 TVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVL--NIGDWIPW-LDFLDLQGYVKRMKALKKKFDRFHDHVFDEHK 259 (301)
Q Consensus 183 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~-l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 259 (301)
++||.+++..+ .+ . .++.+.+...+...+.. .+.+.+|+ ++++| +..++..+..+.+.+++.++|++++
T Consensus 163 ~~fG~~~~~~~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~--~~~~~~~~~~~~~~~~~~~~i~~r~ 234 (476)
T 2fdv_A 163 IVFGDRFDYKD-KE-F----LSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLP--GPQQQAFQLLQGLEDFIAKKVEHNQ 234 (476)
T ss_dssp HHHSSCCCTTC-HH-H----HHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcCCCCC-HH-H----HHHHHHHHHHHHhhcccccchhhhhhhHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999886443 12 1 44444455544432211 12345676 55554 3334566777888999999999887
Q ss_pred hhhcCCCCCCCCCCHHHHHhhcccC--CCCcccCcccchheec
Q 036271 260 ANRKGNLKDFVPKDMVDLLLQMADD--PNLDVKLNYDSVRGFT 300 (301)
Q Consensus 260 ~~~~~~~~~~~~~d~ld~lL~~~~d--~~~~~~lt~~~i~~~~ 300 (301)
+..+ .+ .++|+++.||+...+ .+++..+|+++|.+.+
T Consensus 235 ~~~~--~~--~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 273 (476)
T 2fdv_A 235 RTLD--PN--SPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTT 273 (476)
T ss_dssp TTCC--TT--SCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHH
T ss_pred HhcC--CC--CCccHHHHHHHHHHhcccCccccccHHHHHHHH
Confidence 6532 11 267999999974221 1123469999987653
No 10
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.97 E-value=4.4e-31 Score=243.91 Aligned_cols=260 Identities=20% Similarity=0.282 Sum_probs=187.7
Q ss_pred cccCCCCCCCCCCccccccccC-CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcc
Q 036271 26 RRALKFPAGPKPWPIIGNLNLI-GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAG 104 (301)
Q Consensus 26 ~~~~~~ppgP~~~PllGnl~~~-~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~ 104 (301)
++..++||||+++|++||+.++ ...++..+.+|.++||||+++++|+.++|+++||+.+++++.+++..|++|+.....
T Consensus 6 ~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~ 85 (476)
T 1po5_A 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVV 85 (476)
T ss_dssp ---CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGG
T ss_pred cCCCCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 3445789999999999999988 567889999999999999999999999999999999999998887788887653322
Q ss_pred cceeccCcceeeCCCChhhHHHHHHHHHhhccHH--HHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHH
Q 036271 105 KHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSK--RLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISR 182 (301)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~--~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~ 182 (301)
.....+ .+ ++..+|+.|+++||++. +.|++. .++.+.+.+.++++.+++.+.+..|+++|+.+.+.++++|||++
T Consensus 86 ~~~~~~-~~-l~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~vi~~ 162 (476)
T 1po5_A 86 DPIFQG-YG-VIFANGERWRALRRFSL-ATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICS 162 (476)
T ss_dssp CSCCSS-CC-CCCSSHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHH
T ss_pred HhhcCC-Cc-eEecCCcHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHH
Confidence 222222 34 44557999999999985 778765 45678999999999999999865467899999999999999999
Q ss_pred HHhCccccCCCccchhhhhHHHHHHHHHHHHHhhccc--ccchhccc-cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 036271 183 TVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVL--NIGDWIPW-LDFLDLQGYVKRMKALKKKFDRFHDHVFDEHK 259 (301)
Q Consensus 183 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~-l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 259 (301)
++||.+++..+ .+ . ..+.+.+...+...... ...+.+|+ ++++|. ..++..+..+.+..++.++|++++
T Consensus 163 ~~fG~~~~~~~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~lp~--~~~~~~~~~~~~~~~~~~~i~~r~ 234 (476)
T 1po5_A 163 IVFGKRFDYKD-PV-F----LRLLDLFFQSFSLISSFSSQVFELFSGFLKHFPG--THRQIYRNLQEINTFIGQSVEKHR 234 (476)
T ss_dssp HHHSSCCCTTC-HH-H----HHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTSSC--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCC-HH-H----HHHHHHHHHHHhhhcchhhHHHHhhhHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999886433 11 1 23333333333211111 12345675 455532 234566677888999999999887
Q ss_pred hhhcCCCCCCCCCCHHHHHhhccc--CCCCcccCcccchheec
Q 036271 260 ANRKGNLKDFVPKDMVDLLLQMAD--DPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 260 ~~~~~~~~~~~~~d~ld~lL~~~~--d~~~~~~lt~~~i~~~~ 300 (301)
+..+ .. .++|+++.||+... +.+++..+|+++|.+.+
T Consensus 235 ~~~~--~~--~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 273 (476)
T 1po5_A 235 ATLD--PS--NPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTV 273 (476)
T ss_dssp TTCC--TT--SCCSHHHHHHHHHHHHTCCTTCHHHHHHHHHHH
T ss_pred HhcC--CC--CcccHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Confidence 6532 11 26799999986322 11223458999887653
No 11
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.97 E-value=4.1e-31 Score=244.07 Aligned_cols=260 Identities=20% Similarity=0.270 Sum_probs=180.8
Q ss_pred cccCCCCCCCCCCccccccccC-CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcc
Q 036271 26 RRALKFPAGPKPWPIIGNLNLI-GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAG 104 (301)
Q Consensus 26 ~~~~~~ppgP~~~PllGnl~~~-~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~ 104 (301)
++..++||||+++|++||+.++ ...++..+.+|.++||||+++++|+.++|+++||+.+++++.+++..|++|+.....
T Consensus 7 ~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~ 86 (477)
T 1r9o_A 7 SGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLA 86 (477)
T ss_dssp --CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCC
T ss_pred cCCCCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhh
Confidence 4444689999999999999887 456788899999999999999999999999999999999998887788888753322
Q ss_pred cceeccCcceeeCCCChhhHHHHHHHHHhhccHH--HHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHH
Q 036271 105 KHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSK--RLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISR 182 (301)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~--~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~ 182 (301)
.....+ .+ ++..+|+.|+++||++. +.|++. .++.+.+.+.++++.+++.+.+..|+++|+.+.+.++++|||++
T Consensus 87 ~~~~~~-~~-l~~~~g~~w~~~Rr~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~vi~~ 163 (477)
T 1r9o_A 87 ERANRG-FG-IVFSNGKKWKEIRRFSL-MTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICS 163 (477)
T ss_dssp CTTTCT-TS-STTCCHHHHHHHHHHHH-HHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHHHHHHHHHHH
T ss_pred hhccCC-Cc-eEecCChHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHHHHH
Confidence 222222 33 44557999999999985 778765 34678999999999999999864467899999999999999999
Q ss_pred HHhCccccCCCccchhhhhHHHHHHHHHHHHHhhccc--ccchhccc-cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 036271 183 TVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVL--NIGDWIPW-LDFLDLQGYVKRMKALKKKFDRFHDHVFDEHK 259 (301)
Q Consensus 183 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~-l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 259 (301)
++||.+++..+. + . ..+.+.+.+.+...... .+.+.+|+ ++++|. ..++..+..+.+.+++.++|++++
T Consensus 164 ~~fG~~~~~~~~-~-~----~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~lp~--~~~~~~~~~~~~~~~~~~~i~~r~ 235 (477)
T 1r9o_A 164 IIFHKRFDYKDQ-Q-F----LNLMEKLNENIKILSSPWIQICNNFSPIIDYFPG--THNKLLKNVAFMKSYILEKVKEHQ 235 (477)
T ss_dssp HHHSCCCCTTCH-H-H----HHHHHHHHHHHHHHTCCBC-------CCCSCCTT--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCcCCCCCH-H-H----HHHHHHHHHHHHhhccchhHHHhhccHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998864431 1 1 33444444444322211 22345675 444432 234566677788999999999988
Q ss_pred hhhcCCCCCCCCCCHHHHHhhccc--CCCCcccCcccchheec
Q 036271 260 ANRKGNLKDFVPKDMVDLLLQMAD--DPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 260 ~~~~~~~~~~~~~d~ld~lL~~~~--d~~~~~~lt~~~i~~~~ 300 (301)
+..+ .. .++|+++.||+... +.+++..+|+++|.+.+
T Consensus 236 ~~~~--~~--~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~ 274 (477)
T 1r9o_A 236 ESMD--MN--NPQDFIDCFLMKMEKEKHNQPSEFTIESLENTA 274 (477)
T ss_dssp HTCC--TT--CCCSHHHHHHHHHHHHTTSCSCSCCHHHHHHHH
T ss_pred hccC--CC--CchHHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Confidence 7532 11 26799999986322 11223469999987654
No 12
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.97 E-value=1.8e-31 Score=246.82 Aligned_cols=252 Identities=18% Similarity=0.223 Sum_probs=176.9
Q ss_pred CCCCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhC-CcccccCCCCCccccee
Q 036271 30 KFPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTH-DHIFASRPQTAAGKHTT 108 (301)
Q Consensus 30 ~~ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~-~~~f~~R~~~~~~~~~~ 108 (301)
+.||||+++|++||++++.+.++..+.+|.++||+|+++++|+.++|+|+||++++++|.++ ...|.+|+.......
T Consensus 14 ~~~PGP~~~PliGn~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~~-- 91 (485)
T 3nxu_A 14 LGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGF-- 91 (485)
T ss_dssp HTCCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCGG--
T ss_pred CCCCCCCCcCeecCcHHhhcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcccccccc--
Confidence 45899999999999999866788889999999999999999999999999999999999987 678888875433221
Q ss_pred ccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc--CCceehHHHHHHHHHHHHHHHHhC
Q 036271 109 YNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS--GKPVVLKEHLSRVTLSIISRTVLG 186 (301)
Q Consensus 109 ~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~--g~~vd~~~~~~~~t~~ii~~~~fG 186 (301)
. .+++++.+|+.|+++||+++ ++|++++++.+.+.++++++.+++.+.+.+ |+++|+.+.+.++++|+|++++||
T Consensus 92 -~-~~~l~~~~g~~w~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~~~~fG 168 (485)
T 3nxu_A 92 -M-KSAISIAEDEEWKRLRSLLS-PTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFG 168 (485)
T ss_dssp -G-GGSTTTCCHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHHHHHHS
T ss_pred -c-ccCccccCCcHHHHHHhhcC-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHHcC
Confidence 1 23456678999999999995 899999999999999999999999997643 789999999999999999999999
Q ss_pred ccccCCCccchhhhhHHHHHHHHHHHHHhhcc---cccchhcccccc----ccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 036271 187 KKYFSESKAEDSIVTLEEFQEMLDELFLLNGV---LNIGDWIPWLDF----LDLQGYVKRMKALKKKFDRFHDHVFDEHK 259 (301)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~l~~----~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 259 (301)
.+++..+... +.+.+.+.+.+..... ......+|++.+ ++..... ++..+.+..++.++++++.
T Consensus 169 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 239 (485)
T 3nxu_A 169 VNIDSLNNPQ------DPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFP---REVTNFLRKSVKRMKESRL 239 (485)
T ss_dssp CCCCGGGCTT------CHHHHHHTTSCCCCTTSHHHHHHHHCTTHHHHHHHTTCCSSC---HHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCCC------cHHHHHHHHHhchhhHHHHHHHHHHhhhhHHHHHHhhhhhch---HHHHHHHHHHHHHHHHHHH
Confidence 9987543222 3333333322211000 001123443322 2111111 1233444556666665553
Q ss_pred hhhcCCCCCCCCCCHHHHHhhcccCC--CCcccCcccchheec
Q 036271 260 ANRKGNLKDFVPKDMVDLLLQMADDP--NLDVKLNYDSVRGFT 300 (301)
Q Consensus 260 ~~~~~~~~~~~~~d~ld~lL~~~~d~--~~~~~lt~~~i~~~~ 300 (301)
+. ... ...|+++.|++...+. +.+..+|+++|.+.+
T Consensus 240 ~~---~~~--~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~ 277 (485)
T 3nxu_A 240 ED---TQK--HRVDFLQLMIDSQNSKETESHKALSDLELVAQS 277 (485)
T ss_dssp HC---C-----CCCHHHHHHHHHC--------CCCHHHHHHHH
T ss_pred hc---cCC--CcccHHHHHHHhhhccccccccCCCHHHHHHHH
Confidence 32 111 2789999999843221 123469999887643
No 13
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.97 E-value=3.7e-31 Score=242.16 Aligned_cols=254 Identities=14% Similarity=0.202 Sum_probs=193.6
Q ss_pred CCCCCCCCC-CccccccccCCCCchHHHHHHHHhhC-CceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccc
Q 036271 29 LKFPAGPKP-WPIIGNLNLIGPLPHQSLHKLSQKYG-QIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKH 106 (301)
Q Consensus 29 ~~~ppgP~~-~PllGnl~~~~~~~~~~~~~~~~~yG-~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~ 106 (301)
.++||||++ +|++||++++...++..+.+|+++|| +||++++|+.++|||+||+++++++.+++..|++|+.......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~ 81 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQFGKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVP 81 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHHHHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHH
T ss_pred CCCCCCCCCCcchhccHHHHccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHH
Confidence 468999765 99999998886678889999999999 9999999999999999999999999998888888865333222
Q ss_pred eeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHH-HHHhhcCCceehHHHHHHHHHHHHHHHHh
Q 036271 107 TTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFIS-RLYALSGKPVVLKEHLSRVTLSIISRTVL 185 (301)
Q Consensus 107 ~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~-~l~~~~g~~vd~~~~~~~~t~~ii~~~~f 185 (301)
.. + .+++++.+|+.|+++||++. +.|++++++.|.+.++++++.+++ .+.+ .++++|+.+.+.+++++++++++|
T Consensus 82 ~~-g-~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~-~~~~vd~~~~~~~~~~~~i~~~~f 157 (450)
T 3gw9_A 82 VF-G-EGVAYAAPYPRMREQLNFLA-EELTIAKFQNFVPAIQHEVRKFMAANWDK-DEGEINLLEDCSTMIINTACQCLF 157 (450)
T ss_dssp HH-C-TTSGGGSCHHHHHHHHHHHH-HTTSGGGCTTHHHHHHHHHHHHHHHHSCS-SEEEEEHHHHHHHHHHHHHHHHHS
T ss_pred Hh-c-CCcccCCCcHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccHHHHHHHHHHHHHHHHHc
Confidence 21 2 35556668999999999985 899999999999999999999999 6643 246899999999999999999999
Q ss_pred CccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 036271 186 GKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGN 265 (301)
Q Consensus 186 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~ 265 (301)
|.++....+ . ..+.+.+..+... ......++|+++++|. ...++..+..+.+.+++.++|+++++.....
T Consensus 158 G~~~~~~~~-~------~~~~~~~~~~~~~--~~~~~~~~P~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ 227 (450)
T 3gw9_A 158 GEDLRKRLD-A------RRFAQLLAKMESS--LIPAAVFLPILLKLPL-PQSARCHEARTELQKILSEIIIARKEEEVNK 227 (450)
T ss_dssp CHHHHHHSC-H------HHHHHHHHHHHHT--CCGGGGTCGGGGGSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Ccchhhhhh-h------HHHHHHHHHHHhc--cccchhcccchhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 988753221 1 3455555544332 2233457888888764 3345566778889999999999887643211
Q ss_pred CCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 266 LKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 266 ~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+. .+.|+++.|++. .+++ +..+|+++|.+.+
T Consensus 228 ~~--~~~d~l~~ll~~-~~~~-~~~l~~~~i~~~~ 258 (450)
T 3gw9_A 228 DS--STSDLLSGLLSA-VYRD-GTPMSLHEVCGMI 258 (450)
T ss_dssp SC--CCCSHHHHHHHC-BCTT-SCBCCHHHHHHHH
T ss_pred CC--ccchHHHHHHHh-hccC-CCCCCHHHHHHHH
Confidence 22 278999999983 3222 3468999887643
No 14
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.97 E-value=5.4e-30 Score=236.45 Aligned_cols=254 Identities=18% Similarity=0.207 Sum_probs=182.9
Q ss_pred cCCCCCCCCCCccccccccC--C---CCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC
Q 036271 28 ALKFPAGPKPWPIIGNLNLI--G---PLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA 102 (301)
Q Consensus 28 ~~~~ppgP~~~PllGnl~~~--~---~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~ 102 (301)
....+|||+++|++||+.++ . +.++..+.+|.++||+|+++++|+.++|+++||+++++++.++ ..|.+|+...
T Consensus 22 pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~~~~ 100 (482)
T 3k9v_A 22 NVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRLEIK 100 (482)
T ss_dssp EGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCCCCH
T ss_pred CCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCCCch
Confidence 34558999999999998876 1 3567889999999999999999999999999999999999884 4688886432
Q ss_pred c---ccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc---CCceehHHHHHHHH
Q 036271 103 A---GKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS---GKPVVLKEHLSRVT 176 (301)
Q Consensus 103 ~---~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~---g~~vd~~~~~~~~t 176 (301)
. ..... +...++++.+|+.|+++||++.+.+++++.++.|.+.+.++++.+++.+.+.+ |+++|+.+.+.+++
T Consensus 101 ~~~~~~~~~-~~~~~l~~~~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~~~~~t 179 (482)
T 3k9v_A 101 PWKAYRDHR-NEAYGLMILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWS 179 (482)
T ss_dssp HHHHHHHHH-TCCCCTTTCCHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCCceeCCCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 1 11111 12334566789999999999964345888899999999999999999998753 67899999999999
Q ss_pred HHHHHHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhcc--ccccccccchHHHHHHHHHHHHHHHHHH
Q 036271 177 LSIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIP--WLDFLDLQGYVKRMKALKKKFDRFHDHV 254 (301)
Q Consensus 177 ~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (301)
+|+|++++||.+++..+... . ....++.+.+..++..... ...+| ++++++. ...++..+..+.+.+++.++
T Consensus 180 ~dvi~~~~fG~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 253 (482)
T 3k9v_A 180 FESICLVLYEKRFGLLQKET-E-EEALTFITAIKTMMSTFGK---MMVTPVELHKRLNT-KVWQAHTLAWDTIFKSVKPC 253 (482)
T ss_dssp HHHHHHHHHSCCCCSSSTTS-T-TSSHHHHHHHHHHHTTGGG---GSSSCHHHHHHHTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCCCCCCc-c-hHHHHHHHHHHHHHHHHHH---HHhhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986433110 0 0014566666665543322 12233 3344432 22334555667778888899
Q ss_pred HHHHHhhhcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 255 FDEHKANRKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 255 I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
|+++++... .+ ...|+++.+++. ..+|+++|.+.+
T Consensus 254 i~~r~~~~~--~~--~~~d~l~~ll~~-------~~l~~~ei~~~~ 288 (482)
T 3k9v_A 254 IDNRLQRYS--QQ--PGADFLCDIYQQ-------DHLSKKELYAAV 288 (482)
T ss_dssp HHHHHHHTT--TC--TTSCHHHHHHHH-------TCCCHHHHHHHH
T ss_pred HHHHHHHhc--cC--CchHHHHHHHhc-------cCCCHHHHHHHH
Confidence 998886542 11 257899888872 137888876543
No 15
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.96 E-value=5.6e-30 Score=235.58 Aligned_cols=246 Identities=14% Similarity=0.199 Sum_probs=183.8
Q ss_pred CCCCCCCC-CccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCccccee
Q 036271 30 KFPAGPKP-WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTT 108 (301)
Q Consensus 30 ~~ppgP~~-~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~ 108 (301)
+.||||++ +|+|||++++.++|+..+.+|+++|||||++++|+.++|+|+||+++++++.+++..|+.|+.........
T Consensus 11 ~~PP~~~~~lP~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~~ 90 (461)
T 3ld6_A 11 KSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPV 90 (461)
T ss_dssp CCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHHH
T ss_pred CCCCCCCCCcCeeeeHHHhhhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhcc
Confidence 46777765 99999999887778999999999999999999999999999999999999999888888776422211111
Q ss_pred ccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHHHhCcc
Q 036271 109 YNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKK 188 (301)
Q Consensus 109 ~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~~fG~~ 188 (301)
.| .+++++.+|+.|+++|+++. ++|+.+.++.+.+.++++++++++.|.+ +.++|+.+.+..++++++++++||.+
T Consensus 91 ~g-~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~fG~~ 166 (461)
T 3ld6_A 91 FG-KGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE--SGEKNVFEALSELIILTASHCLHGKE 166 (461)
T ss_dssp HC-TTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS--EEEEEHHHHHHHHHHHHHHHHHTCHH
T ss_pred CC-CccccCCCcHHHHHHHHhcc-ccccHHHHhhhhHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHHHHHcCcc
Confidence 23 45667778999999999995 8999999999999999999999988865 45789999999999999999999988
Q ss_pred ccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 036271 189 YFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKD 268 (301)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~ 268 (301)
+.+... +.+.+....+.... ......+| .|+|...+ ++..+..+.+.+++.+.|+++++.. +
T Consensus 167 ~~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~-~~~~~~~~~l~~~~~~~i~~r~~~~----~- 228 (461)
T 3ld6_A 167 IRSQLN--------EKVAQLYADLDGGF--SHAAWLLP--GWLPLPSF-RRRDRAHREIKDIFYKAIQKRRQSQ----E- 228 (461)
T ss_dssp HHHTCC--------HHHHHHHHHHHTTS--SHHHHHSC--TTSCCHHH-HHHHHHHHHHHHHHHHHHHHHTTCC----C-
T ss_pred hhhhhh--------hhhhhhhhhhhhhh--hhHHHhhh--hhccCcHH-HHHHHHHHHHHHHHHHHHHHHHhcC----C-
Confidence 754331 23333333322211 11122233 23333333 3455677888889999998876532 2
Q ss_pred CCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 269 FVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 269 ~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
..+|+++.|++. .+++ +..+|+++|.+.+
T Consensus 229 -~~~d~l~~ll~~-~~~~-~~~ls~~ei~~~~ 257 (461)
T 3ld6_A 229 -KIDDILQTLLDA-TYKD-GRPLTDDEVAGML 257 (461)
T ss_dssp -CCCSHHHHHHTC-BCTT-SCBCCHHHHHHHH
T ss_pred -CCcchhhhhHHh-hhcc-cCCCCHHHHHHHH
Confidence 278999999984 3332 4469999987654
No 16
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.96 E-value=1.4e-28 Score=226.86 Aligned_cols=252 Identities=17% Similarity=0.212 Sum_probs=178.4
Q ss_pred CCCCCCCCCccccccccC-CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCccccee
Q 036271 30 KFPAGPKPWPIIGNLNLI-GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTT 108 (301)
Q Consensus 30 ~~ppgP~~~PllGnl~~~-~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~ 108 (301)
+.||||+++|++||+.++ ...++..+.+|.++||||+++++|+.++|+|+||+++++++.+. .| +++.........
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~--~f-~~~~~~~~~~~~ 79 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDES--RF-DKNLSQALKFVR 79 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTT--TE-EECCCHHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhc--Cc-CcCchhHHHHHH
Confidence 347999999999999887 45678889999999999999999999999999999999999542 35 332211111111
Q ss_pred -ccCcceeeC-CCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc-CCceehHHHHHHHHHHHHHHHHh
Q 036271 109 -YNYLNLTWA-PYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS-GKPVVLKEHLSRVTLSIISRTVL 185 (301)
Q Consensus 109 -~~~~~~~~~-~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~-g~~vd~~~~~~~~t~~ii~~~~f 185 (301)
..+.+++.+ .+|+.|+++||++. ++|++++++.|.+.+.++++++++.|.+.. |+++|+.+.+.++++|||+.++|
T Consensus 80 ~~~~~~l~~~~~~g~~w~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~~vi~~~~f 158 (470)
T 2ij2_A 80 DFAGDGLFTSWTHEKNWKKAHNILL-PSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGF 158 (470)
T ss_dssp HHHTTSGGGSCTTSHHHHHHHHHHG-GGGSTTTHHHHHHHHHHHHHHHHHHHHTCCTTCCEEHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCceEEcCCCchHHHHHHHHhc-cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEHHHHHHHHHHHHHHHHHc
Confidence 112344444 47999999999995 899999999999999999999999997643 56899999999999999999999
Q ss_pred CccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 036271 186 GKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGN 265 (301)
Q Consensus 186 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~ 265 (301)
|.+++..+..+ . ..+.+.+...+....... ...|++.+++. ...++..+..+.+.+++.++|++|++..
T Consensus 159 G~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~--- 227 (470)
T 2ij2_A 159 NYRFNSFYRDQ-P----HPFITSMVRALDEAMNKL--QRANPDDPAYD-ENKRQFQEDIKVMNDLVDKIIADRKASG--- 227 (470)
T ss_dssp SCCCCGGGCSS-C----CHHHHHHHHHHHHHHHTC-----CTTSGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCcccccccCC-C----CHHHHHHHHHHHHHHHHH--hhhhhHhhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 99886431111 1 334444443332211110 01134444422 2234456667788899999999887642
Q ss_pred CCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 266 LKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 266 ~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
.+ ++|+++.|++ ..+++++..+|+++|.+.+
T Consensus 228 -~~--~~dll~~ll~-~~~~~~~~~ls~~ei~~~~ 258 (470)
T 2ij2_A 228 -EQ--SDDLLTHMLN-GKDPETGEPLDDENIRYQI 258 (470)
T ss_dssp -CC--CSSHHHHHHH-CCCTTTCCCCCHHHHHHHH
T ss_pred -cC--chhHHHHHHh-ccCcccCCCCCHHHHHHHH
Confidence 11 6799999998 3333234469999987654
No 17
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.95 E-value=1.3e-28 Score=226.28 Aligned_cols=249 Identities=14% Similarity=0.211 Sum_probs=180.8
Q ss_pred cccCCCCCC-CCCCccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC-c
Q 036271 26 RRALKFPAG-PKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA-A 103 (301)
Q Consensus 26 ~~~~~~ppg-P~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~-~ 103 (301)
++..++||| |+++|++||++++...++..+.+|+++||+||++++|+.++|||+||+.++++|.++...|..++... .
T Consensus 7 ~~~~~~PPg~P~~lP~iG~l~~~~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~ 86 (461)
T 3i3k_A 7 PAGVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRL 86 (461)
T ss_dssp ---CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHH
T ss_pred CCCCCCCCCCCCCCCccccHHhhccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHh
Confidence 345578999 89999999998886678899999999999999999999999999999999999998876665432111 1
Q ss_pred ccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHH
Q 036271 104 GKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRT 183 (301)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~ 183 (301)
.... .+ .+++++.+|+.|+.+||++. +.|+.+.++.|.+.+++++.++++.|.+ +.++|+.+.+..+++++++++
T Consensus 87 ~~~~-~g-~g~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~ll~~l~~--~~~~dl~~~~~~~~~~~~~~~ 161 (461)
T 3i3k_A 87 TTPV-FG-KGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE--SGEKNVFEALSELIILTASHC 161 (461)
T ss_dssp HHHH-HC-TTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS--EEEEEHHHHHHHHHHHHHHHH
T ss_pred hhhh-cC-CeeeeCCCcHHHHHHHHHHh-hhhCHHHHHHHHHHHHHHHHHHHHHhhh--cCCcCHHHHHHHHHHHHHHHH
Confidence 1111 12 45566667999999999995 7899999999999999999999998865 346899999999999999999
Q ss_pred HhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036271 184 VLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRK 263 (301)
Q Consensus 184 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~ 263 (301)
+||.++..... ..+.+....+... .......+| .|+|... .++..+..+.+.+++.++|+++++..
T Consensus 162 ~~G~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~P--~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~- 227 (461)
T 3i3k_A 162 LHGKEIRSQLN--------EKVAQLYADLDGG--FSHAAWLLP--GWLPLPS-FRRRDRAHREIKDIFYKAIQKRRQSQ- 227 (461)
T ss_dssp HTCHHHHHTCC--------HHHHHHHHHHHTT--SSHHHHHSC--TTSCCHH-HHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HccHhhhhHHH--------HHHHHHHHHHHhc--cccchhhcc--cccCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 99987743321 2233333332211 111122334 3444333 34556677888899999998876542
Q ss_pred CCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 264 GNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 264 ~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+ ...|+++.|++. .+++ +..+|+++|...+
T Consensus 228 ---~--~~~d~l~~ll~~-~~~~-~~~l~~~~i~~~~ 257 (461)
T 3i3k_A 228 ---E--KIDDILQTLLDA-TYKD-GRPLTDDEVAGML 257 (461)
T ss_dssp ---C--CCCSHHHHHHTC-BCTT-SCBCCHHHHHHHH
T ss_pred ---c--ccccHHHHHHHh-hhcc-CCCCCHHHHHHHH
Confidence 2 268999999984 3322 3469999887643
No 18
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.95 E-value=2.1e-27 Score=219.55 Aligned_cols=257 Identities=14% Similarity=0.092 Sum_probs=175.3
Q ss_pred CCCCCCCCCCccccccccC---C--CCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCc
Q 036271 29 LKFPAGPKPWPIIGNLNLI---G--PLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAA 103 (301)
Q Consensus 29 ~~~ppgP~~~PllGnl~~~---~--~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~ 103 (301)
.+.+|||++.|+. |+..+ . ..++..+.+|.++||||+++++|+.++|+|+||+++++++.+++ .|++|+....
T Consensus 8 L~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~~~~~ 85 (487)
T 3n9y_A 8 FNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERFLIPP 85 (487)
T ss_dssp GGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCCCCHH
T ss_pred HhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCCCCcH
Confidence 3458999998876 76554 1 25678899999999999999999999999999999999998764 6888875322
Q ss_pred cc-c-eeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc------CCceehHHHHHHH
Q 036271 104 GK-H-TTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS------GKPVVLKEHLSRV 175 (301)
Q Consensus 104 ~~-~-~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~------g~~vd~~~~~~~~ 175 (301)
.. . ...+...++++.+|+.|+++||++.+.+|+.++++.|.+.++++++++++.|.+.. +.++|+.+.+.++
T Consensus 86 ~~~~~~~~~~~~~l~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~ 165 (487)
T 3n9y_A 86 WVAYHQYYQRPIGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRF 165 (487)
T ss_dssp HHHHHHHTTCCCCGGGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHHHHHH
T ss_pred HHHHHHHccccCCCccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHHHHHH
Confidence 10 0 11122345667889999999999964369999999999999999999999997632 3579999999999
Q ss_pred HHHHHHHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccc--cccccccchHHHHHHHHHHHHHHHHH
Q 036271 176 TLSIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPW--LDFLDLQGYVKRMKALKKKFDRFHDH 253 (301)
Q Consensus 176 t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (301)
++|+|++++||.+++..+... . .....+.+.+..++..... ..++|. +++++... .++..+..+.+.+++.+
T Consensus 166 t~dvi~~~~fG~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~---~~~~p~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 239 (487)
T 3n9y_A 166 AFESITNVIFGERQGMLEEVV-N-PEAQRFIDAIYQMFHTSVP---MLNLPPDLFRLFRTKT-WKDHVAAWDVIFSKADI 239 (487)
T ss_dssp HHHHHHHHHHSSCCCTTSSSC-C-HHHHHHHHHHHHHHHHHGG---GTTSCHHHHHHHCHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCC-C-hHHHHHHHHHHHHHHHHHH---HHhcCHHHHhhcccHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999987543221 1 0013444555554443221 233442 33433222 22333444455666666
Q ss_pred HHHHHHhhhcC-CCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 254 VFDEHKANRKG-NLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 254 ~I~~~~~~~~~-~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
.|+++++...+ ........|+++.|++ . ..+|+++|.+.+
T Consensus 240 ~i~~~~~~~~~~~~~~~~~~d~l~~ll~-~------~~l~~~ei~~~~ 280 (487)
T 3n9y_A 240 YTQNFYWELRQKGSVHHDYRGILYRLLG-D------SKMSFEDIKANV 280 (487)
T ss_dssp HHHHHHHHHHHHCCCCSSCCCHHHHHHH-S------CSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHh-c------CCCCHHHHHHHH
Confidence 77665433211 1111226799999997 2 247888877643
No 19
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.95 E-value=1.7e-27 Score=218.05 Aligned_cols=240 Identities=15% Similarity=0.176 Sum_probs=172.9
Q ss_pred ccCCCCCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccc
Q 036271 27 RALKFPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKH 106 (301)
Q Consensus 27 ~~~~~ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~ 106 (301)
+..+.||||+++|++||+..+...++ .+.+|.++||+|+++++++.++|+++||+.+++++.+++..|+++... ....
T Consensus 9 ~~~~~pPgp~~~P~iG~~~~~~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~~~~ 86 (444)
T 2ve3_A 9 NSLPIPPGDFGLPWLGETLNFLNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL-STRI 86 (444)
T ss_dssp CCCCCCCCCCCBTTTBTHHHHHHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-HHHH
T ss_pred CCCCCCCCCCCCCccccHHHHhcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-HHHH
Confidence 44578999999999999987643466 788999999999999988889999999999999998876667644321 1111
Q ss_pred eeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHHHhC
Q 036271 107 TTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLG 186 (301)
Q Consensus 107 ~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~~fG 186 (301)
. .+ ..++++.+|+.|+++||++. ++|++++++.+.+.++++++++++.|.+ ++++|+.+.+.++++|+|++++||
T Consensus 87 ~-~g-~~~l~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~--~~~vd~~~~~~~~~~~vi~~~~fG 161 (444)
T 2ve3_A 87 L-LG-PNALATQMGEIHRSRRKILY-QAFLPRTLDSYLPKMDGIVQGYLEQWGK--ANEVIWYPQLRRMTFDVAATLFMG 161 (444)
T ss_dssp H-HC-TTSGGGCCHHHHHHHHHHHH-GGGCHHHHHTTHHHHHHHHHHHHHHHHH--SSEEEHHHHHHHHHHHHHHHHHTC
T ss_pred H-hC-ccccccCCchHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhcC--CCcEeHHHHHHHHHHHHHHHHHcC
Confidence 1 12 22344567999999999995 8999999999999999999999999965 678999999999999999999999
Q ss_pred ccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 036271 187 KKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNL 266 (301)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~ 266 (301)
+.+..+ .+ +.+.+......... +...+| ...+ ++..+..+.+.+++.++|++++++ +
T Consensus 162 -~~~~~~-~~--------~~~~~~~~~~~~~~--~~~~~p------~~~~-~~~~~~~~~~~~~~~~~i~~r~~~----~ 218 (444)
T 2ve3_A 162 -EKVSQN-PQ--------LFPWFETYIQGLFS--LPIPLP------NTLF-GKSQRARALLLAELEKIIKARQQQ----P 218 (444)
T ss_dssp -HHHHSC-TT--------HHHHHHHHHHHHSS--CCCCST------TSHH-HHHHHHHHHHHHHHHHHHHHHHTS----C
T ss_pred -CCcccH-HH--------HHHHHHHHHHHHhc--CCccCC------CcHH-HHHHHHHHHHHHHHHHHHHHHhcC----C
Confidence 443222 11 22222222221111 111122 2122 344556777888999999888764 1
Q ss_pred CCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 267 KDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 267 ~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
. ..+|+++.|++ ..+++ +..+|+++|.+.+
T Consensus 219 ~--~~~d~l~~ll~-~~~~~-~~~l~~~~i~~~~ 248 (444)
T 2ve3_A 219 P--SEEDALGILLA-ARDDN-NQPLSLPELKDQI 248 (444)
T ss_dssp C--CCSSHHHHHHH-CBCTT-SCBCCHHHHHHHH
T ss_pred C--CccCHHHHHHh-ccccC-CCCCCHHHHHHHH
Confidence 1 26799999998 33322 3469999987653
No 20
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.95 E-value=3.6e-27 Score=216.57 Aligned_cols=245 Identities=13% Similarity=0.170 Sum_probs=163.4
Q ss_pred CCCCC-CCCCccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCccccee
Q 036271 30 KFPAG-PKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTT 108 (301)
Q Consensus 30 ~~ppg-P~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~ 108 (301)
++||| |+++|++||+.++...++..+.+|.++||||+++++|+.++++|+||+.+++++.+++..|++|+........
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~- 82 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFRTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI- 82 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH-
T ss_pred CCCCCCCCCCCCccCHHHHhhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh-
Confidence 67998 8899999999888667889999999999999999999999999999999999998877778877643222111
Q ss_pred ccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHHHhCcc
Q 036271 109 YNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKK 188 (301)
Q Consensus 109 ~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~~fG~~ 188 (301)
.+ .+ ++. +|+.|+++|+++. ++|++++++.+.+.++++++++++.|.+ ++++|+.+.+.++++++|++++||.+
T Consensus 83 ~g-~~-~~~-~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~~~~--~~~vd~~~~~~~~~~~vi~~~~fG~~ 156 (455)
T 2cib_A 83 FG-EG-VVF-DASPERRKEMLHN-AALRGEQMKGHAATIEDQVRRMIADWGE--AGEIDLLDFFAELTIYTSSACLIGKK 156 (455)
T ss_dssp HC------------------------CCHHHHHHHHHHHHHHHHHHHTTCCS--EEEEEHHHHHHHHHHHHHHHHHTCHH
T ss_pred cC-Cc-ccc-CcHHHHHHHhhhc-cccCHHHHHHHHHHHHHHHHHHHHHhCC--CCcEeHHHHHHHHHHHHHHHHHcCCC
Confidence 12 23 333 5999999999994 8999999999999999999999998754 45899999999999999999999998
Q ss_pred ccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 036271 189 YFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKD 268 (301)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~ 268 (301)
+..... .++.+.+..+.... ..+..++|+ ++... .++..+..+.+.+++.++|+++++... ..
T Consensus 157 ~~~~~~--------~~~~~~~~~~~~~~--~~~~~~~p~---l~~~~-~~~~~~~~~~~~~~~~~~i~~r~~~~~--~~- 219 (455)
T 2cib_A 157 FRDQLD--------GRFAKLYHELERGT--DPLAYVDPY---LPIES-FRRRDEARNGLVALVADIMNGRIANPP--TD- 219 (455)
T ss_dssp HHTTCC--------HHHHHHHHHHHTTC--CGGGGTCTT---CSCHH-HHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred cchhhh--------HHHHHHHHHHHhhh--hHHHHhccc---CCChh-HHHHHHHHHHHHHHHHHHHHHHHhccc--CC-
Confidence 754321 33444444433211 112223453 32222 234556677888899999998876432 11
Q ss_pred CCCCCHHHHHhhcccCCCCccc-Ccccchheec
Q 036271 269 FVPKDMVDLLLQMADDPNLDVK-LNYDSVRGFT 300 (301)
Q Consensus 269 ~~~~d~ld~lL~~~~d~~~~~~-lt~~~i~~~~ 300 (301)
..++|+++.|++. .+++ +.. +|+++|.+.+
T Consensus 220 ~~~~dll~~ll~~-~~~~-~~~~l~~~~i~~~~ 250 (455)
T 2cib_A 220 KSDRDMLDVLIAV-KAET-GTPRFSADEITGMF 250 (455)
T ss_dssp --CCCHHHHHHHC-BCTT-SSBSCCHHHHHHHH
T ss_pred CCcccHHHHHHHh-hhhc-CCCCCCHHHHHHHH
Confidence 1134999999983 3322 334 8999887643
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.94 E-value=1.8e-27 Score=219.17 Aligned_cols=243 Identities=20% Similarity=0.239 Sum_probs=153.3
Q ss_pred CCCCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC-ccccee
Q 036271 30 KFPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA-AGKHTT 108 (301)
Q Consensus 30 ~~ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~-~~~~~~ 108 (301)
..||||+++|++||+.++..+++..+.+|.+ ||||+++++|+.++++|+||+.+++++.++ .|.+++... .....
T Consensus 23 eppPgP~~~P~iG~~~~~~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~- 98 (467)
T 3dbg_A 23 EPPVAGGGVPLLGHGWRLARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGL- 98 (467)
T ss_dssp BCCEECCCCSTTHHHHHHHHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC--------------
T ss_pred CCCCCCCCCCcccchHHhccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHh-
Confidence 3488999999999998886678888999987 999999999999999999999999999877 564443222 11111
Q ss_pred ccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHHHhCcc
Q 036271 109 YNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKK 188 (301)
Q Consensus 109 ~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~~fG~~ 188 (301)
.+ .+++++.+|+.|+++||++. ++|++++++.|.+.++++++.+++.|.+ ++++|+.+.+.+++++++++++||.+
T Consensus 99 ~g-~~~l~~~dg~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~vi~~~~~g~~ 174 (467)
T 3dbg_A 99 LG-KEGVATANGPLHRRQRRTIQ-PAFRLDAIPAYGPIMEEEAHALTERWQP--GKTVDATSESFRVAVRVAARCLLRGQ 174 (467)
T ss_dssp ------------------CGGGH-HHHSTTTSTTTHHHHHHHHHHHHHHSCT--TSCEEHHHHHHHHHHHHHHHHHSCSS
T ss_pred cC-CCCcccCCcHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhcc--CCcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 12 13456678999999999995 8999999999999999999999999865 67999999999999999999999998
Q ss_pred ccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhcc--ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 036271 189 YFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIP--WLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNL 266 (301)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~ 266 (301)
+.... . ..+...+..++.... ...++| ++.++|.. ..++..+..+.+.+++.++|++++++ +
T Consensus 175 ~~~~~----~----~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~r~~~----~ 238 (467)
T 3dbg_A 175 YMDER----A----ERLCVALATVFRGMY---RRMVVPLGPLYRLPLP-ANRRFNDALADLHLLVDEIIAERRAS----G 238 (467)
T ss_dssp CCHHH----H----HHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHTTC----C
T ss_pred ccchh----H----HHHHHHHHHHHHHHH---HHhccchhhhhhCCCh-HhHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 75211 1 445555554443211 122344 23444322 23445566778888999999887653 2
Q ss_pred CCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 267 KDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 267 ~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
.+ +.|+++.|++ ..+++ +..+|+++|.+.+
T Consensus 239 ~~--~~dll~~ll~-~~~~~-~~~ls~~ei~~~~ 268 (467)
T 3dbg_A 239 QK--PDDLLTALLE-AKDDN-GDPIGEQEIHDQV 268 (467)
T ss_dssp SS--CCSHHHHHTT-C---------CHHHHHHHH
T ss_pred CC--chHHHHHHHh-hccCC-CCCCCHHHHHHHH
Confidence 22 6799999998 33322 3369999887643
No 22
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.93 E-value=6.7e-26 Score=207.08 Aligned_cols=231 Identities=16% Similarity=0.185 Sum_probs=161.1
Q ss_pred cccCCCCCCCCCCccccccc-cCCCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCCCCCc
Q 036271 26 RRALKFPAGPKPWPIIGNLN-LIGPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRPQTAA 103 (301)
Q Consensus 26 ~~~~~~ppgP~~~PllGnl~-~~~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~ 103 (301)
++.++.||||+++|++||+. .+...|+..+.+| ++||||+++++ |+.++|+++||+++++++.++ .|++|+....
T Consensus 22 ~~~~~~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~ 98 (436)
T 2cd8_A 22 RRTQQGTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNST 98 (436)
T ss_dssp ------------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCS
T ss_pred chhccCCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccccccc
Confidence 44557799999999999986 4555688899999 99999999998 888999999999999999876 5877764211
Q ss_pred ccce--eccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHH
Q 036271 104 GKHT--TYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSII 180 (301)
Q Consensus 104 ~~~~--~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii 180 (301)
.... .....+++++.+|+.|+++||++. ++|++++++.|.+.++++++++++.|.+..|+++|+.+.+ ..++++||
T Consensus 99 ~~~~~~~~~~~~~l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~~vi 177 (436)
T 2cd8_A 99 TPLTEAEAALNHNMLESDPPRHTRLRKLVA-REFTMRRVELLRPRVQEIVDGLVDAMLAAPDGRADLMESLAWPLPITVI 177 (436)
T ss_dssp SCCCTTGGGTCCSGGGCCTTHHHHHHHHHG-GGSSHHHHHTTHHHHHHHHHHHHHHHHTCTTSCEEHHHHTTTHHHHHHH
T ss_pred cccccccccccccccccCchHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 1110 011123455678999999999995 8999999999999999999999999984226789999977 57999999
Q ss_pred HHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 036271 181 SRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKA 260 (301)
Q Consensus 181 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 260 (301)
+. +||.+.+ + . +.+.+.+..++.. .+ + ++..+..+.+.+++.++|+++++
T Consensus 178 ~~-~~G~~~~--~--~------~~~~~~~~~~~~~---------~~-----~-----~~~~~~~~~~~~~~~~~i~~r~~ 227 (436)
T 2cd8_A 178 SE-LLGVPEP--D--R------AAFRVWTDAFVFP---------DD-----P-----AQAQTAMAEMSGYLSRLIDSKRG 227 (436)
T ss_dssp HH-HHTCCGG--G--H------HHHHHHHHHHHSC---------SS-----T-----THHHHHHHHHHHHHHHHHHHHTT
T ss_pred HH-HhCCCHH--H--H------HHHHHHHHHHhcc---------CC-----H-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 98 7998653 1 1 3454444433310 01 1 23445677788889999988764
Q ss_pred hhcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 261 NRKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 261 ~~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
. . .+|+++.|++. .++ ++..+|+++|.+.+
T Consensus 228 ~----~----~~d~l~~ll~~-~~~-~~~~ls~~ei~~~~ 257 (436)
T 2cd8_A 228 Q----D----GEDLLSALVRT-SDE-DGSRLTSEELLGMA 257 (436)
T ss_dssp S----C----CCSHHHHHHHH-HHH-CTTTSCHHHHHHHH
T ss_pred C----C----CCCHHHHHHHh-hhc-cCCCCCHHHHHHHH
Confidence 2 2 56999999984 322 13469999987654
No 23
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.92 E-value=1.8e-26 Score=213.67 Aligned_cols=245 Identities=13% Similarity=0.068 Sum_probs=170.6
Q ss_pred cccCCCCCCCCC-CccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCc-ccccCCCCCc
Q 036271 26 RRALKFPAGPKP-WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDH-IFASRPQTAA 103 (301)
Q Consensus 26 ~~~~~~ppgP~~-~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~-~f~~R~~~~~ 103 (301)
++..++||||++ +|++||++++...|+..+.+|+++|||||++++|+.++|||+||+.++++|.++.. .+.+++....
T Consensus 9 ~~~~~~PPgp~~~lPliG~~~~~~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~~~ 88 (491)
T 3v8d_A 9 RRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFALS 88 (491)
T ss_dssp CCCTTSCCEEEEEESSTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHHHH
T ss_pred ccCCCCCCCCCCCcceeccHHHHhcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHHHH
Confidence 455679999999 69999999998889999999999999999999999999999999999999976552 4444432212
Q ss_pred ccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc-----CCceehHHHHHHHHHH
Q 036271 104 GKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS-----GKPVVLKEHLSRVTLS 178 (301)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~-----g~~vd~~~~~~~~t~~ 178 (301)
...+ + .+.+...+|+.|+++|+++. ++|++++++.+.+.+.+++.++++.+.... ..++++.+.+..++++
T Consensus 89 ~~~~--g-~~~~~~~~g~~~~~~Rr~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (491)
T 3v8d_A 89 AKAF--G-HRSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFE 164 (491)
T ss_dssp HHHH--T-CCCCCGGGSSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHHHH
T ss_pred HHhc--C-CcccccccchhHHHHHHHHH-HHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHHHH
Confidence 2222 2 23344457999999999885 899999999999999999999988653211 2468999999999999
Q ss_pred HHHHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccc-cccccchHHHHHHHHHHHHHHHHHHHHH
Q 036271 179 IISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLD-FLDLQGYVKRMKALKKKFDRFHDHVFDE 257 (301)
Q Consensus 179 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~-~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 257 (301)
+++..+||.+....+ .. . ..+.+.++.+... .+.+|.+. ++|. ...++..+..+.+.+.+.+.+++
T Consensus 165 ~~~~~~fG~~~~~~~-~~-~----~~~~~~~~~~~~~------~~~~~~l~~~~p~-~~~~~~~~a~~~l~~~~~~~~~~ 231 (491)
T 3v8d_A 165 AGYLTIFGRDLTRRD-TQ-K----AHILNNLDNFKQF------DKVFPALVAGLPI-HMFRTAHNAREKLAESLRHENLQ 231 (491)
T ss_dssp HHHHHHHCBCCSCGG-GH-H----HHHHHHHHHHHHH------HHHHHHHHTTCCG-GGCHHHHHHHHHHHHHTSHHHHT
T ss_pred HHHHHHcCccccccc-hh-h----hhhHHHHHHHHHH------HHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999875433 11 1 3344444443322 23344332 2332 22344555555555555444432
Q ss_pred HHhhhcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchhee
Q 036271 258 HKANRKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGF 299 (301)
Q Consensus 258 ~~~~~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~ 299 (301)
++ . .+.|+++.++....+ +..+|++++...
T Consensus 232 ~~-------~--~~~d~l~~l~~~~~~---~~~~~~~ei~~~ 261 (491)
T 3v8d_A 232 KR-------E--SISELISLRMFLNDT---LSTFDDLEKAKT 261 (491)
T ss_dssp TC-------B--SCCHHHHHHHHHHHH---HBCCCHHHHHHH
T ss_pred cc-------c--cccHHHHHHHHHhhc---cCCCchHHHHHH
Confidence 21 1 167999999873222 235888887654
No 24
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.92 E-value=9.7e-24 Score=193.45 Aligned_cols=232 Identities=14% Similarity=0.167 Sum_probs=163.2
Q ss_pred CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCc--cccee--ccCcceeeCCCChhh
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAA--GKHTT--YNYLNLTWAPYGPYW 123 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~--~~~~~--~~~~~~~~~~~g~~W 123 (301)
++.++..+.+|.++||||+++++|+.++|+|+||+++++++.++ .|.+++.... ..... ..+.+++++.+|+.|
T Consensus 9 g~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w 86 (456)
T 3mdm_A 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDSKMYRALQTVFGERLFGQGLVSECNYERW 86 (456)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT--TSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHH
T ss_pred cchHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc--cccccchhHHHHHHhhcccccCCCcccCCChHHH
Confidence 44578889999999999999999999999999999999999643 3444432110 00000 012345555689999
Q ss_pred HHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc--CCceehHHHHHHHHHHHHHHHHhCccccCCCccchhhhh
Q 036271 124 RQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS--GKPVVLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVT 201 (301)
Q Consensus 124 k~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~--g~~vd~~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 201 (301)
+++||++. ++|++++++.|.+.+.++++.+++.+.+.. +.++|+.+.+.++++|+|++++||.+++..+...
T Consensus 87 ~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~----- 160 (456)
T 3mdm_A 87 HKQRRVID-LAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQ----- 160 (456)
T ss_dssp HHHHHHHG-GGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCC-----
T ss_pred HHHHhhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccc-----
Confidence 99999985 899999999999999999999999998754 5799999999999999999999999987543222
Q ss_pred HHHHHHHHHHHHHhhcccccchhcccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhh
Q 036271 202 LEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQ-GYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQ 280 (301)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~-~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~ 280 (301)
..+.+.+..++..... ...|+++++|.. ...+...+..+.+.+++.++|+++++...... ..+.|+++.|++
T Consensus 161 -~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~--~~~~d~l~~ll~ 233 (456)
T 3mdm_A 161 -KPLSQAVKLMLEGITA----SRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGE--EVPADILTQILK 233 (456)
T ss_dssp -HHHHHHHHHHHHHHHH----HHHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCCCCHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHH----HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchhhHHHHHHH
Confidence 3444444443332211 112333444321 11234455666778888899988876543211 236799999998
Q ss_pred cccCCCCcccCcccchhee
Q 036271 281 MADDPNLDVKLNYDSVRGF 299 (301)
Q Consensus 281 ~~~d~~~~~~lt~~~i~~~ 299 (301)
. .+ ..+|+++|.+.
T Consensus 234 ~-~~----~~~~~~~l~~~ 247 (456)
T 3mdm_A 234 A-EE----GAQDDEGLLDN 247 (456)
T ss_dssp H-TS----SCSSSHHHHHH
T ss_pred h-cC----CCCCHHHHHHH
Confidence 3 22 24777877654
No 25
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.91 E-value=1.6e-23 Score=189.39 Aligned_cols=225 Identities=11% Similarity=0.074 Sum_probs=160.4
Q ss_pred CCCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEecC-CccEEEecCHHHHHHHHHhCC-cccccCCCCCcccc--
Q 036271 31 FPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG-SFPVVVAASAEMAKQFLQTHD-HIFASRPQTAAGKH-- 106 (301)
Q Consensus 31 ~ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg-~~~~vvi~dp~~~keil~~~~-~~f~~R~~~~~~~~-- 106 (301)
+||||+++|++||+.+ +|+..+.+|+ +||||++++++ +.+.++|+|++.++++|.++. ..+.+|+.......
T Consensus 2 ~pPGp~~~P~~g~~~~---~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~~ 77 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP---EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASG 77 (404)
T ss_dssp ----CCBSSCCCSSTT---SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHH
T ss_pred CCCCCCCCCCCCCcCC---CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccccc
Confidence 5999999999999865 6888899996 59999999874 566777899999999998764 34555654322111
Q ss_pred --eeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc--CCceehHHHHHHHHHHHHHH
Q 036271 107 --TTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS--GKPVVLKEHLSRVTLSIISR 182 (301)
Q Consensus 107 --~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~--g~~vd~~~~~~~~t~~ii~~ 182 (301)
...+ ..++++.+|+.|+++||++. ++|++++++.+.+.++++++++++.|.+.. |+++|+...+...+.++++.
T Consensus 78 ~~~~~~-~~~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~i~~ 155 (404)
T 1jfb_A 78 KQAAKA-KPTFVDMDPPEHMHQRSMVE-PTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIY 155 (404)
T ss_dssp HHHTTS-CCCGGGCCTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHH
T ss_pred cchhcc-cCcccccCchhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 0112 23455667999999999984 899999999999999999999999998753 46899999999999999999
Q ss_pred HHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036271 183 TVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANR 262 (301)
Q Consensus 183 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ 262 (301)
.+||.+++ + .++.......+ .. +.+ ..++..+..+.+.+++.++|++++++
T Consensus 156 ~~~G~~~~-----~------~~~~~~~~~~~-----------~~---~~~---~~~~~~~~~~~~~~~~~~~i~~r~~~- 206 (404)
T 1jfb_A 156 TLLGVPFN-----D------LEYLTQQNAIR-----------TN---GSS---TAREASAANQELLDYLAILVEQRLVE- 206 (404)
T ss_dssp HHHTCCGG-----G------HHHHHHHHHHH-----------HC---TTS---CHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHcCCCHH-----H------HHHHHHHHHHH-----------hc---cCc---chHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 99998663 1 22222211111 00 111 12345566777888999999888653
Q ss_pred cCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 263 KGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 263 ~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
. .+|+++.|++.. ++ +..+|+++|.+.+
T Consensus 207 ---~----~~d~l~~ll~~~-~~--~~~l~~~ei~~~~ 234 (404)
T 1jfb_A 207 ---P----KDDIISKLCTEQ-VK--PGNIDKSDAVQIA 234 (404)
T ss_dssp ---C----CSSHHHHHHHHT-TT--TTSSCHHHHHHHH
T ss_pred ---C----CCcHHHHHHHhh-cc--CCCCCHHHHHHHH
Confidence 2 569999999732 22 2358999987654
No 26
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.90 E-value=6.2e-23 Score=186.26 Aligned_cols=228 Identities=13% Similarity=0.120 Sum_probs=161.5
Q ss_pred CCCCccccccccCCCCchHHHHHHHHhhC-CceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC--cccceeccC
Q 036271 35 PKPWPIIGNLNLIGPLPHQSLHKLSQKYG-QIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA--AGKHTTYNY 111 (301)
Q Consensus 35 P~~~PllGnl~~~~~~~~~~~~~~~~~yG-~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~--~~~~~~~~~ 111 (301)
||+.|++||+..+..+|+..+.+|.++|| ||+++++++.++|+++||+.++.++ + ...|+.++..+ ....+ .+
T Consensus 5 ~Pg~P~lG~~~~~~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~-~g- 80 (417)
T 1izo_A 5 IPHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSL-FG- 80 (417)
T ss_dssp -CBCCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTT-TC-
T ss_pred CCCCCccchHHHHhhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhh-cc-
Confidence 44459999998876678899999999998 8999999999999999999998544 3 23465443221 11111 12
Q ss_pred cceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHHHhCccccC
Q 036271 112 LNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFS 191 (301)
Q Consensus 112 ~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~~fG~~~~~ 191 (301)
.+++++.+|+.|+++|+++. ++|++++++.|.+.++++++++++.|.+ ++++|+.+.+..+++++|+++ ||.+++.
T Consensus 81 ~~~l~~~dg~~h~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~--~~~~dl~~~~~~~~~~vi~~~-~G~~~~~ 156 (417)
T 1izo_A 81 VNAIQGMDGSAHIHRKMLFL-SLMTPPHQKRLAELMTEEWKAAVTRWEK--ADEVVLFEEAKEILCRVACYW-AGVPLKE 156 (417)
T ss_dssp TTCGGGCCHHHHHHHHHHHH-HTSSHHHHHHHHHHHHHHHHHHHHHHTT--SSEEEHHHHHHHHHHHHHHHH-HTCCCCT
T ss_pred ccceeecCChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHhc--CCCeeHHHHHHHHHHHHHHHH-cCCCCCc
Confidence 23455678999999999985 8999999999999999999999999976 678999999999999999998 6987753
Q ss_pred CCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 036271 192 ESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVP 271 (301)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~ 271 (301)
.+ . .++.+.+..++..... ..| ..++..+..+.+.+++.++|+++++... . . ..
T Consensus 157 ~~----~----~~~~~~~~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~i~~r~~~~~-~-~--~~ 210 (417)
T 1izo_A 157 TE----V----KERADDFIDMVDAFGA-----VGP---------RHWKGRRARPRAEEWIEVMIEDARAGLL-K-T--TS 210 (417)
T ss_dssp TT----H----HHHHHHHHHHHHHTTC-----CSH---------HHHHHHHHHHHHHHHHHHHHHHHHTTSS-C-C--CT
T ss_pred hH----H----HHHHHHHHHHHhhccc-----CCc---------cchhHHHHHHHHHHHHHHHHHHHHhhcc-C-C--Cc
Confidence 21 1 3333333333221110 111 1233456777888999999999876532 1 1 25
Q ss_pred CCHHHHHhhcccCCCCcccCcccchhe
Q 036271 272 KDMVDLLLQMADDPNLDVKLNYDSVRG 298 (301)
Q Consensus 272 ~d~ld~lL~~~~d~~~~~~lt~~~i~~ 298 (301)
+|+++.|++ ..+++ +..++++++..
T Consensus 211 ~d~l~~ll~-~~~~~-g~~l~~~~~~~ 235 (417)
T 1izo_A 211 GTALHEMAF-HTQED-GSQLDSRMAAI 235 (417)
T ss_dssp TSHHHHHHH-CBCTT-SCBCCHHHHHH
T ss_pred CCHHHHHHH-hcccc-CCCCCHHHHHH
Confidence 799999998 43322 44588776543
No 27
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.90 E-value=1.5e-23 Score=190.99 Aligned_cols=239 Identities=11% Similarity=0.069 Sum_probs=163.8
Q ss_pred cCCCCCCCCCCccccccccCC-----CCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCCC-
Q 036271 28 ALKFPAGPKPWPIIGNLNLIG-----PLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRPQ- 100 (301)
Q Consensus 28 ~~~~ppgP~~~PllGnl~~~~-----~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~~- 100 (301)
+.++||| ++|++.... ..|+..+.+|++ ||||+++++ |+.++|||+||+.|+++|.+. +.|++|+.
T Consensus 4 ~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~~ 76 (428)
T 1cpt_A 4 RATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEGS 76 (428)
T ss_dssp TCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSSC
T ss_pred ccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCcccc
Confidence 4578888 999875542 347888888876 799999998 789999999999999999654 47888875
Q ss_pred CCcc---c-c-e---ec---cCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehH
Q 036271 101 TAAG---K-H-T---TY---NYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLK 169 (301)
Q Consensus 101 ~~~~---~-~-~---~~---~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~ 169 (301)
.... . . + .. +..+++++.+|+.|+++||+++ ++|++++++.|.+.++++++++++.|.+. ++++|+.
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~g~~~~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~~ 154 (428)
T 1cpt_A 77 EILYDQNNEAFMRSISGGCPHVIDSLTSMDPPTHTAYRGLTL-NWFQPASIRKLEENIRRIAQASVQRLLDF-DGECDFM 154 (428)
T ss_dssp SSCCCHHHHHHHHHHTTTSSCSSCCGGGCCTTHHHHHHHHHH-TTSSHHHHGGGHHHHHHHHHHHHHHHHTS-SSEEEHH
T ss_pred ccCCcccccchhccccccccccccccccCChHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCeehH
Confidence 3221 1 1 1 11 1123455667999999999995 89999999999999999999999999863 3689997
Q ss_pred HH-HHHHHHHHHHHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHH
Q 036271 170 EH-LSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFD 248 (301)
Q Consensus 170 ~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 248 (301)
.. ...+++|||+++ ||.+.+ + . +++.+....++..... ....+|++++++ ....++..+..+.+.
T Consensus 155 ~~~~~~~~~~vi~~~-fG~~~~--~--~------~~~~~~~~~~~~~~~~--~~~~~P~l~~~~-~~~~~~~~~~~~~~~ 220 (428)
T 1cpt_A 155 TDCALYYPLHVVMTA-LGVPED--D--E------PLMLKLTQDFFGVHEP--DEQAVAAPRQSA-DEAARRFHETIATFY 220 (428)
T ss_dssp HHTTTTHHHHHHHHH-HTCCGG--G--H------HHHHHHHHTTTCC-------------------CHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHH-cCCCHh--H--H------HHHHHHHHHHHhcccc--cccccccccccc-hhhHHHHHHHHHHHH
Confidence 55 467999999999 998663 1 1 3344443332211111 112345554431 123345666778888
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 249 RFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 249 ~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+++.++|+++++. . .+|+++.|++. .+ ++..+|+++|.+.+
T Consensus 221 ~~~~~~i~~r~~~----~----~~dll~~ll~~-~~--~~~~ls~~ei~~~~ 261 (428)
T 1cpt_A 221 DYFNGFTVDRRSC----P----KDDVMSLLANS-KL--DGNYIDDKYINAYY 261 (428)
T ss_dssp HHHHHHHHHHTTS----C----CSSHHHHHHHC-BS--SSSBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcC----C----CCcHHHHHHhc-cc--cCCCCCHHHHHHHH
Confidence 8999999887652 2 56999999983 32 23469999987654
No 28
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.90 E-value=6.3e-23 Score=185.67 Aligned_cols=220 Identities=17% Similarity=0.217 Sum_probs=159.7
Q ss_pred CCCCCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEe----c-CC-ccEEEecCHHHHHHHH-HhCCcccccCCCC
Q 036271 29 LKFPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLK----F-GS-FPVVVAASAEMAKQFL-QTHDHIFASRPQT 101 (301)
Q Consensus 29 ~~~ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~----l-g~-~~~vvi~dp~~~keil-~~~~~~f~~R~~~ 101 (301)
.++||||+++|+. +...|+..+.+| ++||||++++ + |+ .++|+++||+.++++| .++ .|++++..
T Consensus 9 ~~lppgp~~~p~~-----~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~~~ 80 (406)
T 1ued_A 9 APLLREPANFQLR-----TNCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRPQF 80 (406)
T ss_dssp CCEEECCTTTTCE-----ETTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCCCC
T ss_pred CCCcccCcccCCC-----CCCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--cccccccc
Confidence 4689999999987 455688999999 9999999999 7 88 9999999999999999 444 36666531
Q ss_pred Cccc-ceec--cCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHH-HHH
Q 036271 102 AAGK-HTTY--NYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSR-VTL 177 (301)
Q Consensus 102 ~~~~-~~~~--~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~-~t~ 177 (301)
.... .+.. ...++++..+|+.|+++||++. ++|++++++.+.+.++++++++++.|.+. |+++|+.+.+.. +++
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~~ 158 (406)
T 1ued_A 81 TQSKSGAHVEAQFVGQISTYDPPEHTRLRKMLT-PEFTVRRIRRMEPAIQSLIDDRLDLLEAE-GPSADLQGLFADPVGA 158 (406)
T ss_dssp ---------CGGGTTCGGGCCTTHHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTEEHHHHTHHHHHH
T ss_pred cccccccccccccccccccCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeHHHHHHHHhHH
Confidence 1110 1110 0122455678999999999995 89999999999999999999999999753 678999998875 999
Q ss_pred HHHHHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 036271 178 SIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDE 257 (301)
Q Consensus 178 ~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 257 (301)
++|+ .+||.+.+ + . +.+.+.+..++.. . . . .++..+..+.+.+++.++|++
T Consensus 159 ~vi~-~~~G~~~~-----~-~----~~~~~~~~~~~~~---------~-----~---~-~~~~~~~~~~~~~~~~~~i~~ 209 (406)
T 1ued_A 159 HALC-ELLGIPRD-----D-Q----REFVRRIRRNADL---------S-----R---G-LKARAADSAAFNRYLDNLLAR 209 (406)
T ss_dssp HHHH-HHHTCCHH-----H-H----HHHHHHHHHCC-----------------C---C-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcCCCHH-----H-H----HHHHHHHHHHHhc---------c-----C---C-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999 57998642 1 1 3344433322110 0 0 1 134556677888899999988
Q ss_pred HHhhhcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 258 HKANRKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 258 ~~~~~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+++. . .+|+++.|++. . +..+|+++|.+.+
T Consensus 210 r~~~----~----~~d~l~~ll~~-~----~~~ls~~ei~~~~ 239 (406)
T 1ued_A 210 QRAD----P----DDGLLGMIVRD-H----GDNVTDEELKGLC 239 (406)
T ss_dssp HHHS----C----CSSHHHHHHHH-H----GGGSCHHHHHHHH
T ss_pred HHhC----C----CCCHHHHHHHh-c----CCCCCHHHHHHHH
Confidence 8753 2 56999999983 2 2358988887653
No 29
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.90 E-value=9.9e-23 Score=184.81 Aligned_cols=228 Identities=11% Similarity=0.064 Sum_probs=159.3
Q ss_pred CCCCCCCccccccccCCCCchHHHHHHHHhh-CCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC--ccccee
Q 036271 32 PAGPKPWPIIGNLNLIGPLPHQSLHKLSQKY-GQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA--AGKHTT 108 (301)
Q Consensus 32 ppgP~~~PllGnl~~~~~~~~~~~~~~~~~y-G~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~--~~~~~~ 108 (301)
|||| |++||+..+..+|+..+.++.++| |||+++++++.+++++++|+.++ ++.+. ..|++++..+ ....+
T Consensus 4 pPg~---P~iG~~~~~~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~- 77 (415)
T 3awm_A 4 TPHT---KGPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL- 77 (415)
T ss_dssp --------CCCCHHHHHHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT-
T ss_pred CCCC---CccchHHHHHhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc-
Confidence 5666 899999887556889999999999 79999999988999999999986 66544 4576553221 11111
Q ss_pred ccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHHHhCcc
Q 036271 109 YNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKK 188 (301)
Q Consensus 109 ~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~~fG~~ 188 (301)
.+ .+.++..+|+.|+++|+++. ++|+++.++.+.+.+.++++++++.|.+ ++++|+.+.+..++++||+++ ||.+
T Consensus 78 ~g-~~~l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~~~~--~~~vdl~~~~~~~~~~vi~~~-~G~~ 152 (415)
T 3awm_A 78 LG-QGGVQGLDGETHRHRKQMFM-GLMTPERVRALAQLFEAEWRRAVPGWTR--KGEIVFYDELHEPLTRAVCAW-AGVP 152 (415)
T ss_dssp SC-SSSGGGCCHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHHHH--HSEEEHHHHHHHHHHHHHHHH-HTCC
T ss_pred cC-CcceeecCcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhhcc--CCcEeHHHHHHHHHHHHHHHH-cCCC
Confidence 12 23455678999999999984 8999999999999999999999999976 468999999999999999999 8987
Q ss_pred ccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 036271 189 YFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKD 268 (301)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~ 268 (301)
++.. + . .++.+.+..++. .. +.+ . +..++..+..+.+.+++.++|+++++... ..
T Consensus 153 ~~~~---~-~----~~~~~~~~~~~~---~~------~~~--~---~~~~~~~~~~~~~~~~~~~~i~~r~~~~~-~~-- 207 (415)
T 3awm_A 153 LPDD---E-A----GNRAGELRALFD---AA------GSA--S---PRHLWSRLARRRVDAWAKRIIEGIRAGSI-GS-- 207 (415)
T ss_dssp CCGG---G-H----HHHHHHHHHHHH---ST------TCS--S---HHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CC--
T ss_pred CCcc---h-H----HHHHHHHHHHHH---Hh------ccc--C---chHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC--
Confidence 6421 1 1 223232222221 11 100 0 11234556777888999999999887532 11
Q ss_pred CCCCCHHHHHhhcccCCCCcccCcccchhe
Q 036271 269 FVPKDMVDLLLQMADDPNLDVKLNYDSVRG 298 (301)
Q Consensus 269 ~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~ 298 (301)
..+|+++.|++ ..+++ +..+|++++..
T Consensus 208 -~~~d~l~~ll~-~~~~~-g~~~~~~~~~~ 234 (415)
T 3awm_A 208 -GSGTAAYAIAW-HRDRH-DDLLSPHVAAV 234 (415)
T ss_dssp -CTTSHHHHHHH-CBCTT-SCBCCHHHHHH
T ss_pred -CCCCHHHHHHh-hhhcc-CCCCCHHHHHH
Confidence 25799999998 33322 34588876553
No 30
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.89 E-value=8.6e-22 Score=178.57 Aligned_cols=225 Identities=15% Similarity=0.169 Sum_probs=161.6
Q ss_pred CCCCCCCCCccccccccCCCCchHHHHHHHHhh-CCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCCCCCcccce
Q 036271 30 KFPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKY-GQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHT 107 (301)
Q Consensus 30 ~~ppgP~~~PllGnl~~~~~~~~~~~~~~~~~y-G~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~ 107 (301)
..||||+++|.+.--+.+..+|+..+.+| ++| |||+++++ |+.++|+|+||++++++|.++. |++++........
T Consensus 5 ~~~~~~~~~P~~~~~~~~~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~ 81 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSCPYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPR--LSSNRTDDNFPAT 81 (412)
T ss_dssp ---CCCCSSCBSSCCCSSTTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EECCTTSTTSCCC
T ss_pred CCCCCCCCCCCCCCCchhccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcc--cccCccccccccc
Confidence 46889999997633334566789999999 788 99999998 8999999999999999998653 5555431111111
Q ss_pred e-----c-cCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHH-HHHHHH
Q 036271 108 T-----Y-NYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSR-VTLSII 180 (301)
Q Consensus 108 ~-----~-~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~-~t~~ii 180 (301)
. . ...+++++.+|+.|+++||++. +.|++++++.+.+.++++++++++.|.+. |+++|+...+.. ++++||
T Consensus 82 ~~~~~~~~~~~~~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~~~vi 159 (412)
T 2zbx_A 82 SPRFEAVRESPQAFIGLDPPEHGTRRRMTI-SEFTVKRIKGMRPEVEEVVHGFLDEMLAA-GPTADLVSQFALPVPSMVI 159 (412)
T ss_dssp SGGGC----CCCCGGGCCTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHH-CSCEEHHHHTTTHHHHHHH
T ss_pred ccccccccccccccccCCcHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHH
Confidence 0 0 0122455678999999999995 89999999999999999999999999853 678999998874 999999
Q ss_pred HHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 036271 181 SRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKA 260 (301)
Q Consensus 181 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 260 (301)
+. +||.+.+ + . +.+.+.+..++.. . + . ++..+..+.+.+++.++|+++++
T Consensus 160 ~~-~~G~~~~--~--~------~~~~~~~~~~~~~---------~------~--~--~~~~~~~~~~~~~~~~~i~~r~~ 209 (412)
T 2zbx_A 160 CR-LLGVPYA--D--H------EFFQDASKRLVQS---------T------D--A--QSALTARNDLAGYLDGLITQFQT 209 (412)
T ss_dssp HH-HHTCCGG--G--H------HHHHHHHHHHHHC---------S------S--H--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HcCCCHH--H--H------HHHHHHHHHHhcc---------C------c--H--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 97 7998653 1 1 3454444433221 0 0 1 34456677788899999988875
Q ss_pred hhcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 261 NRKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 261 ~~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
. . .+|+++.|++. .++ +..+|+++|.+.+
T Consensus 210 ~----~----~~d~l~~ll~~-~~~--~~~ls~~ei~~~~ 238 (412)
T 2zbx_A 210 E----P----GAGLVGALVAD-QLA--NGEIDREELISTA 238 (412)
T ss_dssp S----C----CSSHHHHHHHT-TTT--TTSSCHHHHHHHH
T ss_pred C----C----CCCHHHHHHHh-ccc--CCCCCHHHHHHHH
Confidence 3 2 46999999983 332 3469999987654
No 31
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.88 E-value=3.8e-23 Score=191.21 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=122.2
Q ss_pred cccCCCCCCCCC-CccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCc-ccccCCCCCc
Q 036271 26 RRALKFPAGPKP-WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDH-IFASRPQTAA 103 (301)
Q Consensus 26 ~~~~~~ppgP~~-~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~-~f~~R~~~~~ 103 (301)
++..+.||||++ +|++||++++...++..+.+|+++||+||++++|+.++|||+||+++++++.++.. .|..++....
T Consensus 9 ~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~~~ 88 (491)
T 3dax_A 9 RRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATS 88 (491)
T ss_dssp CCCTTCCCEEEEEESCTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHHHH
T ss_pred ccCCCCCCcCCCcccchhhHHHHhhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHHHH
Confidence 344568999998 89999999886678899999999999999999999999999999999999976552 3333221111
Q ss_pred ccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhh---c--CCceehHHHHHHHHHH
Q 036271 104 GKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYAL---S--GKPVVLKEHLSRVTLS 178 (301)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~---~--g~~vd~~~~~~~~t~~ 178 (301)
... .+ .+++...+|+.|+++|+.+. ++|+++.++.+.+.+.+++.++++..... . ...+++...+..++++
T Consensus 89 ~~~--~g-~~~~~~~~g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 164 (491)
T 3dax_A 89 AKA--FG-HRSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFE 164 (491)
T ss_dssp HHH--HT-CCCCCGGGTSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHHH
T ss_pred HHH--cC-CCcccccchhHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHHH
Confidence 111 12 23332456899999999985 78999999998888888887777655321 1 2358899999999999
Q ss_pred HHHHHHhCccccC
Q 036271 179 IISRTVLGKKYFS 191 (301)
Q Consensus 179 ii~~~~fG~~~~~ 191 (301)
++++++||.+...
T Consensus 165 ~~~~~~fG~~~~~ 177 (491)
T 3dax_A 165 AGYLTIFGRDLTR 177 (491)
T ss_dssp HHHHHHHCBCSTT
T ss_pred HhHHHHcCccccc
Confidence 9999999987753
No 32
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.87 E-value=1.4e-21 Score=177.33 Aligned_cols=225 Identities=10% Similarity=0.046 Sum_probs=160.7
Q ss_pred cccCCCCCCCCCCccc--cccccC-----CCCchHHHHHHHHhhC--CceEEe-cCCccEEEecCHHHHHHHHHhCCccc
Q 036271 26 RRALKFPAGPKPWPII--GNLNLI-----GPLPHQSLHKLSQKYG--QIMQLK-FGSFPVVVAASAEMAKQFLQTHDHIF 95 (301)
Q Consensus 26 ~~~~~~ppgP~~~Pll--Gnl~~~-----~~~~~~~~~~~~~~yG--~i~~~~-lg~~~~vvi~dp~~~keil~~~~~~f 95 (301)
+...++||||+++|.. +.+..+ ..+|+..+.+|. +|| ||++++ +| ++|+++||+.++++|.+ .+.|
T Consensus 7 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~~f 82 (415)
T 2zwu_A 7 QSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YRHF 82 (415)
T ss_dssp ----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TTTE
T ss_pred cCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-cccc
Confidence 4556899999999975 544322 235788899995 799 999999 66 69999999999999964 4578
Q ss_pred ccCC-CCCcccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-H
Q 036271 96 ASRP-QTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-S 173 (301)
Q Consensus 96 ~~R~-~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~ 173 (301)
++|+ ...... ...+ .++++..+|+.|+++||++. +.|++++++.|.+.+.++++++++.|.+. .++|+.+.+ .
T Consensus 83 ~~~~~~~~~~~-~~~~-~~~l~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~--~~~d~~~~~~~ 157 (415)
T 2zwu_A 83 SSECPFIPREA-GEAY-DFIPTSMDPPEQRQFRALAN-QVVGMPVVDKLENRIQELACSLIESLRPQ--GQCNFTEDYAE 157 (415)
T ss_dssp ETTSCSSSHHH-HHHC-CCTTTTCCTTTTHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHGGG--TEEEHHHHTTT
T ss_pred CCCcccCCCCc-cccc-cccCccCCCcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHH
Confidence 8886 211111 1111 23145667999999999995 89999999999999999999999999863 479999765 7
Q ss_pred HHHHHHHHHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHH
Q 036271 174 RVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDH 253 (301)
Q Consensus 174 ~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (301)
.+++++|+++ ||.+++ + . +++.+.+..++.. . .|. +..+..+.+.+++.+
T Consensus 158 ~~~~~vi~~~-~G~~~~--~--~------~~~~~~~~~~~~~---~-----~P~-----------~~~~~~~~~~~~~~~ 207 (415)
T 2zwu_A 158 PFPIRIFMLL-AGLPEE--D--I------PHLKYLTDQMTRP---D-----GSM-----------TFAEAKEALYDYLIP 207 (415)
T ss_dssp HHHHHHHHHH-HTCCGG--G--H------HHHHHHHHHHHSC---C-----SSS-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHH--H--H------HHHHHHHHHHHhc---c-----CHH-----------HHHHHHHHHHHHHHH
Confidence 8999999999 998763 1 1 3454544443321 0 121 234456677888999
Q ss_pred HHHHHHhhhcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 254 VFDEHKANRKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 254 ~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+|+++++. . .+|+++.|++. .++ +..+|+++|...+
T Consensus 208 ~i~~r~~~----~----~~dll~~ll~~-~~~--~~~l~~~~i~~~~ 243 (415)
T 2zwu_A 208 IIEQRRQK----P----GTDAISIVANG-QVN--GRPITSDEAKRMC 243 (415)
T ss_dssp HHHHHHHS----C----CSSHHHHHHTC-EET--TEECCHHHHHHHH
T ss_pred HHHHHHhC----C----CCCHHHHHHHh-hhc--CCCCCHHHHHHHH
Confidence 99888763 2 56999999983 321 3468999887643
No 33
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.86 E-value=2.4e-20 Score=168.59 Aligned_cols=220 Identities=16% Similarity=0.182 Sum_probs=156.0
Q ss_pred CCCCCCccccccccCCCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCCC--C-Cccccee
Q 036271 33 AGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRPQ--T-AAGKHTT 108 (301)
Q Consensus 33 pgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~~--~-~~~~~~~ 108 (301)
|.++.+|+- ..+..+|+..+.+| ++||||+++++ |+.++|+++||+.++++|.++ .|++|+. . +....+.
T Consensus 6 ~~~p~~~~~---~~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~ 79 (403)
T 3aba_A 6 ADAPTVPKA---RSCPFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVT 79 (403)
T ss_dssp -CCCBCCCC---CSSTTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCC
T ss_pred CCcccCCCC---cccccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccc
Confidence 344445542 23455688889999 89999999997 899999999999999999875 4777742 1 1110111
Q ss_pred c-cCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhC
Q 036271 109 Y-NYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLG 186 (301)
Q Consensus 109 ~-~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG 186 (301)
. ...+++++.+|+.|+++||++. +.|++++++.+.+.+.++++++++.|.+ .|+++|+...+ ..++++||+. +||
T Consensus 80 ~~~~~~~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~-~~~~~d~~~~~~~~~~~~vi~~-~~G 156 (403)
T 3aba_A 80 QKPGRGSLLWQDEPEHTSDRKLLA-KEFTVRRMQALRPNIQRIVDEHLDAIEA-RGGPVDLVKTFANAVPSMVISD-LFG 156 (403)
T ss_dssp CCCCTTCCTTCCTTHHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHHHHH-HCSCEEHHHHTTTHHHHHHHHH-HHT
T ss_pred ccccccccccCCchhHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHH-HcC
Confidence 1 0123356678999999999995 8999999999999999999999999984 26789998766 5799999998 799
Q ss_pred ccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 036271 187 KKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNL 266 (301)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~ 266 (301)
.+.+ + . +.+.+.+..++.. . .| | ++..+..+.+.+++.++|+++++. .
T Consensus 157 ~~~~--~--~------~~~~~~~~~~~~~---~-----~~-----p-----~~~~~~~~~~~~~~~~~i~~r~~~----~ 204 (403)
T 3aba_A 157 VPVE--R--R------AEFQDIAEAMMRV---D-----QD-----A-----AATEAAGMRLGGLLYQLVQERRAN----P 204 (403)
T ss_dssp CCGG--G--H------HHHHHHHHHHSBS---S-----SC-----H-----HHHHHHHHHHHHHHHHHHHHHHHS----C
T ss_pred CCHH--H--H------HHHHHHHHHHHhc---c-----Cc-----H-----HHHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 8663 1 1 3344433322210 0 01 1 345566777888999999888753 2
Q ss_pred CCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 267 KDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 267 ~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
.+|+++.|++. .+ ++..+|+++|.+.+
T Consensus 205 ----~~dll~~ll~~-~~--~~~~l~~~ei~~~~ 231 (403)
T 3aba_A 205 ----GDDLISALITT-ED--PDGVVDDMFLMNAA 231 (403)
T ss_dssp ----CSSHHHHHHTS-CC--TTCCCSHHHHHHHH
T ss_pred ----CCCHHHHHHhh-cc--CCCCCCHHHHHHHH
Confidence 46999999983 33 24469999987654
No 34
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.86 E-value=5.2e-22 Score=183.99 Aligned_cols=161 Identities=12% Similarity=0.019 Sum_probs=119.6
Q ss_pred hcccCCCCCCCCC-CccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC-
Q 036271 25 RRRALKFPAGPKP-WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA- 102 (301)
Q Consensus 25 ~~~~~~~ppgP~~-~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~- 102 (301)
+++..++||||++ +|++||++++...++..+.+|+++|||||++++|+.++||++||+++++++.++...++.++...
T Consensus 13 ~~~~~~~PPgp~~~~P~iG~~~~~~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~ 92 (498)
T 3b6h_A 13 RTRRPGEPPLDLGSIPWLGYALDFGKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIF 92 (498)
T ss_dssp CCCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHHH
T ss_pred hccCCCCCCCCCCCCcchhhHHHhccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHHH
Confidence 3455678999998 89999998875567889999999999999999999999999999999999977654243333211
Q ss_pred cccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhh-c--CCceehHHHHHHHHHHH
Q 036271 103 AGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYAL-S--GKPVVLKEHLSRVTLSI 179 (301)
Q Consensus 103 ~~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~-~--g~~vd~~~~~~~~t~~i 179 (301)
..... .+ .++ +..+|+.| |+++. ++|+++.++.+.+.+.++....+...... . ...+++...+..+++++
T Consensus 93 ~~~~~-~g-~~~-~~~~~~~~---rr~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~~~ 165 (498)
T 3b6h_A 93 LMERI-FD-VQL-PHYSPSDE---KARMK-LTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRA 165 (498)
T ss_dssp HHHHT-SC-CCC-TTCCHHHH---HHHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHHHH
T ss_pred HHHHH-cC-CCc-cccCHHHH---HHHHH-HhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHHHH
Confidence 11111 12 222 34557776 55653 68898889888888877777776655432 1 23578999999999999
Q ss_pred HHHHHhCccccCC
Q 036271 180 ISRTVLGKKYFSE 192 (301)
Q Consensus 180 i~~~~fG~~~~~~ 192 (301)
+++++||.+++..
T Consensus 166 ~~~~~fG~~~~~~ 178 (498)
T 3b6h_A 166 GYLTLYGIEALPR 178 (498)
T ss_dssp HHHHHHCBSCSSC
T ss_pred HHHhhcCcccccc
Confidence 9999999988543
No 35
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.86 E-value=1.7e-20 Score=168.35 Aligned_cols=206 Identities=13% Similarity=0.144 Sum_probs=154.4
Q ss_pred CCCchHHHHHHHHhhCCceEEecCC----ccEEEecCHHHHHHHHHhCCcccccCCCCCcccceeccCcceeeCCCChhh
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKFGS----FPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYW 123 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~lg~----~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W 123 (301)
..+|+..+.+| ++||||+++++|+ .++|+|+||+.++++| ++...|++|+........ ....+++++.+|+.|
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADR-ALLPGILQAYDPPDH 87 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC------CCCTTCGGGCCTTHH
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCccccccccc-cccccccccCCChhH
Confidence 45789999999 5999999999987 8999999999999999 555789888754322211 122355667789999
Q ss_pred HHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHHHhCccccCCCccchhhhhHH
Q 036271 124 RQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLE 203 (301)
Q Consensus 124 k~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~ 203 (301)
+++||++. ++|++++++.+.+.++++++++++.|.+. |+++|+.+.+...+.++++..+||.+.+ .. +
T Consensus 88 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~v~~~~~G~~~~----~~------~ 155 (384)
T 3oo3_A 88 TRLRRTVA-PAYSARRMERLRPRIEEIVEECLDDFESV-GAPVDFVRHAAWPIPAYIACEFLGVPRD----DQ------A 155 (384)
T ss_dssp HHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHS-CSSEEHHHHTTTHHHHHHHHHHHTCCGG----GH------H
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHcCCCHH----HH------H
Confidence 99999995 89999999999999999999999999763 6799999999998888888889998763 11 3
Q ss_pred HHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhccc
Q 036271 204 EFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMAD 283 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~ 283 (301)
.+.+.+..++. . ...++..+..+.+.+++.++|++++++ . .+|+++.|++. .
T Consensus 156 ~~~~~~~~~~~----------~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~----~----~~d~l~~ll~~-~ 207 (384)
T 3oo3_A 156 ELSRMIRESRE----------S---------RLPRQRTLSGLGIVNYTKRLTSGKRRD----P----GDGMIGVIVRE-H 207 (384)
T ss_dssp HHHHHHHHHHH----------C---------SCHHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHHH-H
T ss_pred HHHHHHHHHhc----------c---------CChHHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHHHh-c
Confidence 45454444332 0 012344566778888999999887652 2 56999999983 1
Q ss_pred CCCCcccCcccchheec
Q 036271 284 DPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 284 d~~~~~~lt~~~i~~~~ 300 (301)
+..+|++++.+.+
T Consensus 208 ----~~~l~~~~l~~~~ 220 (384)
T 3oo3_A 208 ----GAEISDEELAGLA 220 (384)
T ss_dssp ----GGGSCHHHHHHHH
T ss_pred ----CCCCCHHHHHHHH
Confidence 3358888887643
No 36
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.86 E-value=6.9e-21 Score=172.39 Aligned_cols=209 Identities=13% Similarity=0.115 Sum_probs=147.8
Q ss_pred cCCCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCCCCCcccc---eec---cCcceeeCC
Q 036271 46 LIGPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKH---TTY---NYLNLTWAP 118 (301)
Q Consensus 46 ~~~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~---~~~---~~~~~~~~~ 118 (301)
.+..+|+..+.+| ++||||+++++ |+.++|+++||+.++++|.++. |++++....... +.. ...+++++.
T Consensus 21 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (408)
T 3abb_A 21 TCPYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFPLIGV 97 (408)
T ss_dssp SSTTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCTTTTC
T ss_pred ccccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCccccccccccccC
Confidence 3456789999999 89999999998 8999999999999999998753 555442111110 111 011245567
Q ss_pred CChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHH-HHHHHHHHHHHhCccccCCCccch
Q 036271 119 YGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLS-RVTLSIISRTVLGKKYFSESKAED 197 (301)
Q Consensus 119 ~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~-~~t~~ii~~~~fG~~~~~~~~~~~ 197 (301)
+|+.|+++||++. +.|++++++.|.+.++++++++++.|.+. |+++|+...+. .++++||+. +||.+.+ + .
T Consensus 98 ~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~--~- 169 (408)
T 3abb_A 98 DDPVHARQRRMLI-PSFGVKRMNAIRPRLQSLVDRLLDDMLAK-GPGADLVSAFALPVPSVAICE-LLGVPYG--D--H- 169 (408)
T ss_dssp CTTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHT-CSCEEHHHHTTTHHHHHHHHH-HHTCCGG--G--H-
T ss_pred CchHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHH-HhCCCHH--H--H-
Confidence 8999999999995 89999999999999999999999999853 67899998876 489999997 7998663 1 1
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHH
Q 036271 198 SIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDL 277 (301)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~ 277 (301)
+.+.+.+..++.. . .| ++..+..+.+.+++.++|+++++. . .+|+++.
T Consensus 170 -----~~~~~~~~~~~~~------~--~~-----------~~~~~~~~~~~~~~~~~i~~r~~~----~----~~d~l~~ 217 (408)
T 3abb_A 170 -----DFFEECSRNFVGA------A--TS-----------AEADAAFGELYTYLHGLVGRKQAE----P----EDGLLDE 217 (408)
T ss_dssp -----HHHHHHHHHHC-------------------------CCSSHHHHHHHHHHHHHHHHHHS----C----CSSHHHH
T ss_pred -----HHHHHHHHHHhcc------c--ch-----------HHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHH
Confidence 3444444332210 0 01 112234556677888889887753 2 4699999
Q ss_pred HhhcccCCCCcccCcccchheec
Q 036271 278 LLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 278 lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
|++. .++ +..+|+++|.+.+
T Consensus 218 ll~~-~~~--~~~ls~~ei~~~~ 237 (408)
T 3abb_A 218 LIAR-QLE--EGDLDHDEVVMIA 237 (408)
T ss_dssp HHHH-HHT--SSSCCHHHHHHHH
T ss_pred HHhc-ccC--CCCCCHHHHHHHH
Confidence 9984 322 3469999987654
No 37
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.86 E-value=5.6e-21 Score=172.90 Aligned_cols=222 Identities=10% Similarity=0.128 Sum_probs=157.8
Q ss_pred CCCCCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEec-CCcc-EEEecCHHHHHHHHHhCCcccccCCCCCcc--
Q 036271 29 LKFPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKF-GSFP-VVVAASAEMAKQFLQTHDHIFASRPQTAAG-- 104 (301)
Q Consensus 29 ~~~ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~l-g~~~-~vvi~dp~~~keil~~~~~~f~~R~~~~~~-- 104 (301)
.+.+|||+++|+.++. ..+|+..+.++. +||||+++++ |+.+ +|+|+||+.++++|.+ ..|++++.....
T Consensus 7 ~~~~~~~~~~p~~~~~---~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~ 80 (406)
T 1s1f_A 7 SQAVPPVRDWPAVDLP---GSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVT 80 (406)
T ss_dssp -CCSCCEEECCCCCCC---TTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBC
T ss_pred hhhccCCCCCCCCccc---ccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCcc
Confidence 3678899989998883 456888898885 7999999996 6666 9999999999999986 368777543211
Q ss_pred --cc-eeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHH
Q 036271 105 --KH-TTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSII 180 (301)
Q Consensus 105 --~~-~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii 180 (301)
.. .. +..+++++.+|+.|+++||++. +.|++++++.|.+.++++++++++.|.+. ++++|+...+ ..++++||
T Consensus 81 ~~~~~~~-~~~~~l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~vi 157 (406)
T 1s1f_A 81 RLAPHFI-PARGAVGFLDPPDHTRLRRSVA-AAFTARGVERVRERSRGMLDELVDAMLRA-GPPADLTEAVLSPFPIAVI 157 (406)
T ss_dssp BSSSSCS-SCTTSGGGCCTTHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHH-CSSEEHHHHTTTHHHHHHH
T ss_pred ccccccc-ccccccccCCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHhhHhHHHHH
Confidence 11 11 1123345567999999999995 88999999999999999999999999842 5789988666 57999999
Q ss_pred HHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 036271 181 SRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKA 260 (301)
Q Consensus 181 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 260 (301)
+. +||.+.+ + . +.+......++.... | + . +..+..+.+.+++.++|+++++
T Consensus 158 ~~-~~G~~~~--~--~------~~~~~~~~~~~~~~~--------~-----~-~----~~~~~~~~~~~~~~~~i~~r~~ 208 (406)
T 1s1f_A 158 CE-LMGVPAT--D--R------HSMHTWTQLILSSSH--------G-----A-E----VSERAKNEMNAYFSDLIGLRSD 208 (406)
T ss_dssp HH-HHTCCGG--G--H------HHHHHHHHHHHHHHT--------T-----C-C----CCHHHHTHHHHHHHHHHHTSCC
T ss_pred HH-HhCCCHH--H--H------HHHHHHHHHHHhccC--------C-----H-H----HHHHHHHHHHHHHHHHHHHHHh
Confidence 99 5998763 1 1 344444444332211 1 0 1 1233455667788888876543
Q ss_pred hhcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 261 NRKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 261 ~~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
. . .+|+++.|++. .++ ..+|+++|.+.+
T Consensus 209 ~----~----~~d~l~~ll~~-~~~---~~ls~~el~~~~ 236 (406)
T 1s1f_A 209 S----A----GEDVTSLLGAA-VGR---DEITLSEAVGLA 236 (406)
T ss_dssp S----C----CCSHHHHHHHH-HHT---TSSCHHHHHHHH
T ss_pred C----C----CCCHHHHHHHh-hcc---cCCCHHHHHHHH
Confidence 2 2 56999999983 322 358998887643
No 38
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.86 E-value=2.6e-22 Score=180.57 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=125.0
Q ss_pred CCCCCCccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCC-CCCcccceeccC
Q 036271 33 AGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRP-QTAAGKHTTYNY 111 (301)
Q Consensus 33 pgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~-~~~~~~~~~~~~ 111 (301)
+++..+|++||++++..+|+..+.+|.++||||++ ++|+.++|+++||+.+++++.++ .|++++ .......+ .+
T Consensus 2 ~~~~~~p~iGnl~~~~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~-~g- 76 (389)
T 1n97_A 2 KRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRL-TG- 76 (389)
T ss_dssp EECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHH-HC-
T ss_pred cccccccccccHHHHhhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHH-hC-
Confidence 35677899999988755688899999999999999 99999999999999999999877 687775 21111111 12
Q ss_pred cceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHHHhCcccc
Q 036271 112 LNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYF 190 (301)
Q Consensus 112 ~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~~fG~~~~ 190 (301)
.+ +++.+|+.|+++||++. ++|++++++.+.+.+.++++++++.|. |+++|+.+.+..+++|+|++++||.+++
T Consensus 77 ~~-l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~---~~~~dl~~~~~~~~~~vi~~~~fG~~~~ 150 (389)
T 1n97_A 77 RG-LLTDWGESWKEARKALK-DPFLPKNVRGYREAMEEEARAFFGEWR---GEERDLDHEMLALSLRLLGRALFGKPLS 150 (389)
T ss_dssp SS-TTTCCHHHHHHHHHHHC-GGGSHHHHHTTHHHHHHHHHHHHHTCC---SCCEEHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred Cc-cccCCcHHHHHHHHHhC-cccCHHHHHHHHHHHHHHHHHHHHHcc---CCcCcHHHHHHHHHHHHHHHHHcCCcch
Confidence 23 45567999999999995 899999999999999999999999986 5789999999999999999999999875
No 39
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.85 E-value=1e-20 Score=172.65 Aligned_cols=231 Identities=16% Similarity=0.114 Sum_probs=157.4
Q ss_pred ccCCCCCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEe--------cCCccEEEecCHHHHHHHHHhCCcccccC
Q 036271 27 RALKFPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLK--------FGSFPVVVAASAEMAKQFLQTHDHIFASR 98 (301)
Q Consensus 27 ~~~~~ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~--------lg~~~~vvi~dp~~~keil~~~~~~f~~R 98 (301)
.....||+|.++++++.......+|+..+.++ ++||||+++. +|+.++++|+||+.++++|.+. ..|++|
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~ 92 (433)
T 3ivy_A 15 TTVPSPNLPPGFDFTDPAIYAERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSY 92 (433)
T ss_dssp -----CCCCTTCCTTCHHHHTTCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEEST
T ss_pred cccCCCCCCCCCCCCCHHHhhcCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCC
Confidence 34466888888887766544445689999988 8899999999 6778999999999999999654 568888
Q ss_pred CCCCccc--------ceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHH
Q 036271 99 PQTAAGK--------HTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKE 170 (301)
Q Consensus 99 ~~~~~~~--------~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~ 170 (301)
+...... ..... ..+++..+|+.|+++||++ .++|++++++.+.+.+.++++++++.|.+ +.++|+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~d~~~ 168 (433)
T 3ivy_A 93 ENGVIPRFKNDIAREDIEVQ-RFVMLNMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAA--AGSGDFVE 168 (433)
T ss_dssp TTCSCCCCCTTCCHHHHHGG-GGSGGGCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHH--HCEEEHHH
T ss_pred cccccccccccccccccccc-cCCccccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh--CCCeeHHH
Confidence 7533221 11111 2345577899999999999 48999999999999999999999999975 46799988
Q ss_pred HH-HHHHHHHHHHHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHH
Q 036271 171 HL-SRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDR 249 (301)
Q Consensus 171 ~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 249 (301)
.+ ..+++++|+++ ||.+. .+ . +.+.+....++ . ...|.... .+..+..+.+.+
T Consensus 169 ~~~~~~~~~vi~~l-~G~~~-----~~-~----~~~~~~~~~~~----~----~~~p~~~~-------~~~~~~~~~~~~ 222 (433)
T 3ivy_A 169 QVSCELPLQAIAGL-LGVPQ-----ED-R----GKLFHWSNEMT----G----NEDPEYAH-------IDPKASSAELIG 222 (433)
T ss_dssp HTTSHHHHHHHHHH-HTCCH-----HH-H----HHHHHHHTTCS----C----CCCGGGTT-------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCH-----HH-H----HHHHHHHHHHh----c----cCCchhhh-------HHHHHHHHHHHH
Confidence 87 99999999996 99633 11 1 23332222111 1 11232111 023456677788
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 250 FHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 250 ~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
++.++|++++++ . .+|+++.|++. .+ ++..+|+++|.+.+
T Consensus 223 ~~~~~i~~r~~~----~----~~dll~~ll~~-~~--~~~~ls~~ei~~~~ 262 (433)
T 3ivy_A 223 YAMKMAEEKAKN----P----ADDIVTQLIQA-DI--DGEKLSDDEFGFFV 262 (433)
T ss_dssp HHHHHHHHC---------------CHHHHHSC-C----CCCCCHHHHHHHH
T ss_pred HHHHHHHHHhcC----C----CCcHHHHHHhh-hc--CCCCCCHHHHHHHH
Confidence 888899877543 2 56999999983 32 23469999987654
No 40
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.85 E-value=3.4e-20 Score=168.25 Aligned_cols=208 Identities=11% Similarity=0.075 Sum_probs=153.1
Q ss_pred CCCchHHHHHHHHhhCCceEEecC-CccEEEecCHHHHHHHHHhCCcccccCCCCCcccceec------cCcceeeCCCC
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKFG-SFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTY------NYLNLTWAPYG 120 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~lg-~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~------~~~~~~~~~~g 120 (301)
..+|+..+.+|+++ |||+++++| +.+++||+||+.|+++|.++ .|++++.......... ....++++.+|
T Consensus 28 ~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg 104 (417)
T 3tyw_A 28 PFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRTDA 104 (417)
T ss_dssp TTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGCCH
T ss_pred ccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhcCC
Confidence 56788999999988 999999997 58999999999999999876 6777643221111111 12345566789
Q ss_pred hhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccCCCccchhh
Q 036271 121 PYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFSESKAEDSI 199 (301)
Q Consensus 121 ~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~ 199 (301)
+.|+++||++. ++|++++++.+.+.++++++++++.+.+. |+++|+...+ ..++++||+.+ ||.+++..
T Consensus 105 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~------- 174 (417)
T 3tyw_A 105 PEHTRYRRMLL-PAFTVRRVRAMRPAVQARVDEILDGMLAA-GGPVDLVSAYANAVSTSVICEL-LGIPRHDL------- 174 (417)
T ss_dssp HHHHHHHHHHG-GGGCHHHHHHTHHHHHHHHHHHHHHHHHH-CSSEEHHHHTHHHHHHHHHHHH-HTCCTTTT-------
T ss_pred cHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCcchHHHHHHHHHHHHHHHH-hCCCHHHH-------
Confidence 99999999995 89999999999999999999999999874 6789999988 57899999997 99877421
Q ss_pred hhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHh
Q 036271 200 VTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLL 279 (301)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL 279 (301)
+.+......++.. .+ . .++..+..+.+.+++.++|+++++. . .+|+++.|+
T Consensus 175 ---~~~~~~~~~~~~~---------~~------~---~~~~~~~~~~l~~~~~~~i~~r~~~----~----~~d~l~~ll 225 (417)
T 3tyw_A 175 ---EFFRDVTRISGSR---------NS------T---AEQVSEALGGLFGLLGGLVAERREE----P----RDDLISKLV 225 (417)
T ss_dssp ---THHHHHHHHHHSS---------SS------C---TTHHHHHHHHHHHHHHHHHHHHHSS----C----CSSHHHHHH
T ss_pred ---HHHHHHHHHHhcc---------cC------C---HHHHHHHHHHHHHHHHHHHHHHhhC----C----CCCHHHHHH
Confidence 2343333322210 11 0 1234566777888999999887652 2 579999999
Q ss_pred hcccCCCCcccCcccchheec
Q 036271 280 QMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 280 ~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+. .++ +..+|++++.+.+
T Consensus 226 ~~-~~~--~~~ls~~el~~~~ 243 (417)
T 3tyw_A 226 TD-HLV--PGNVTTEQLLSTL 243 (417)
T ss_dssp HH-TTT--TTSSCHHHHHHHH
T ss_pred Hh-ccc--CCCCCHHHHHHHH
Confidence 84 332 2359999887653
No 41
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.85 E-value=1.6e-20 Score=172.16 Aligned_cols=220 Identities=11% Similarity=0.048 Sum_probs=154.5
Q ss_pred chHHHHHHHHhhCCce--EEe-cCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccceec---------c---Cccee
Q 036271 51 PHQSLHKLSQKYGQIM--QLK-FGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTY---------N---YLNLT 115 (301)
Q Consensus 51 ~~~~~~~~~~~yG~i~--~~~-lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~---------~---~~~~~ 115 (301)
|+..+.++ ++||||+ +++ +|+.++++|++++.|+++|.+. ..|++|+.........+ + ..+++
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 77888887 6799999 998 7889999999999999999665 67988875433211110 0 12356
Q ss_pred eCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccCCCc
Q 036271 116 WAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFSESK 194 (301)
Q Consensus 116 ~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~ 194 (301)
++.+|+.|+++||+++ ++|++++++.+.+.++++++++++.|.+. ++++|+...+ ..++++||+++ ||.+.+
T Consensus 125 ~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-~~~~dl~~~~~~~~~~~vi~~l-~G~~~~---- 197 (450)
T 3tkt_A 125 VQMDAPKHPKLRRLTQ-DWFMPKNLARLDGEIRKIANEAIDRMLGA-GEEGDFMALVAAPYPLHVVMQI-LGVPPE---- 197 (450)
T ss_dssp GGCCTTHHHHHHHHHH-TTTSHHHHGGGHHHHHHHHHHHHHHHHHT-CSEEEHHHHTTTHHHHHHHHHH-TTCCGG----
T ss_pred ccCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEeeHHHHHHHHHHHHHHHH-cCCChh----
Confidence 6778999999999985 99999999999999999999999999864 6789988877 69999999996 997542
Q ss_pred cchhhhhHHHHHHHHHHHHHhhcccccchhcccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 036271 195 AEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLD-LQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKD 273 (301)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~-~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d 273 (301)
+ . ..+.+....++.. . ...+.+++.++. .....++..+..+.+.+++.++|++++++ . .+|
T Consensus 198 -~-~----~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~d 259 (450)
T 3tkt_A 198 -D-E----PKMLFLTQQMFGG---Q-DEDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRRN----P----TDD 259 (450)
T ss_dssp -G-H----HHHHHHHHTTSCC---C-----------------HHHHHHHHHHHHHHHHHHHHHHHHHS----C----CSS
T ss_pred -H-H----HHHHHHHHHHhcc---c-cchhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC----C----CCC
Confidence 1 1 4444444433221 1 112233322221 12233556677788889999999888763 2 569
Q ss_pred HHHHHhhcccCCCCcccCcccchheec
Q 036271 274 MVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 274 ~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+++.|++. .+ ++..+|+++|.+.+
T Consensus 260 ll~~ll~~-~~--~~~~ls~~ei~~~~ 283 (450)
T 3tkt_A 260 VATVIANA-VV--DGEPMSDRDTAGYY 283 (450)
T ss_dssp HHHHHHTC-EE--TTEECCHHHHHHHH
T ss_pred HHHHHHhc-cc--cCCCCCHHHHHHHH
Confidence 99999983 32 23469999987654
No 42
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.84 E-value=1.3e-20 Score=170.54 Aligned_cols=214 Identities=21% Similarity=0.309 Sum_probs=151.6
Q ss_pred cCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCC--CCc----cc--cee-ccCcceee
Q 036271 46 LIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQ--TAA----GK--HTT-YNYLNLTW 116 (301)
Q Consensus 46 ~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~--~~~----~~--~~~-~~~~~~~~ 116 (301)
.+...|+..+.+| ++||||+++++|+.++|+|+||+.+++++.++. +++++. ... .. .+. ....++++
T Consensus 12 ~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (408)
T 1odo_A 12 PTGADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENMF 88 (408)
T ss_dssp TTCTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSGG
T ss_pred cccCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccccc
Confidence 3456789999999 999999999999899999999999999998654 444431 110 00 000 00123456
Q ss_pred CCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc-CCceehHHHHH-HHHHHHHHHHHhCccccCCCc
Q 036271 117 APYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS-GKPVVLKEHLS-RVTLSIISRTVLGKKYFSESK 194 (301)
Q Consensus 117 ~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~-g~~vd~~~~~~-~~t~~ii~~~~fG~~~~~~~~ 194 (301)
+.+|+.|+++||++. ++|++++++.|.+.+.++++++++.|.+.. |+++|+.+.+. .++++||+. +||.+.+
T Consensus 89 ~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~---- 162 (408)
T 1odo_A 89 TAYGPNHRKLRRLVA-PAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGH-LMGVPQD---- 162 (408)
T ss_dssp GCCHHHHHHHHHTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEHHHHTTTHHHHHHHHH-HHTCCHH----
T ss_pred ccCChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhHHHHHHH-HhCCCHH----
Confidence 778999999999995 899999999999999999999999998644 67899998887 599999996 7998652
Q ss_pred cchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCH
Q 036271 195 AEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDM 274 (301)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ 274 (301)
+ . +.+.+.+..++.. . .+ .++..+..+.+.+++.++|+++++. . .+|+
T Consensus 163 -~-~----~~~~~~~~~~~~~--------~------~~----~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~d~ 210 (408)
T 1odo_A 163 -R-R----DGFRALVDGVFDT--------T------LD----QAEAQANTARLYEVLDQLIAAKRAT----P----GDDM 210 (408)
T ss_dssp -H-H----HHHHHHHHHHHCT--------T------CC----HHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSH
T ss_pred -H-H----HHHHHHHHHHhcc--------c------CC----HHHHHHHHHHHHHHHHHHHHHHhhC----C----CCCH
Confidence 1 1 3444444433210 0 00 1234566777888999999888753 2 4699
Q ss_pred HHHHhhcccCCCCcccCcccchheec
Q 036271 275 VDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 275 ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
++.|++...++.++..+|+++|.+.+
T Consensus 211 l~~ll~~~~~~~~~~~l~~~ei~~~~ 236 (408)
T 1odo_A 211 TSLLIAARDDEGDGDRLSPEELRDTL 236 (408)
T ss_dssp HHHHHHHHCC-----CCCHHHHHHHH
T ss_pred HHHHHHhcccccccCCCCHHHHHHHH
Confidence 99999843221113469999987654
No 43
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.84 E-value=2.6e-20 Score=168.69 Aligned_cols=206 Identities=14% Similarity=0.162 Sum_probs=146.4
Q ss_pred CchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccceeccCcceeeCCCChhhHHHHHH
Q 036271 50 LPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKL 129 (301)
Q Consensus 50 ~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~ 129 (301)
+|+..+.+|++ |||| ++|+.++++++||+.++++|.++ +.|++|+..... ..... .++++..+|+.|+++||+
T Consensus 29 ~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~-~~~~~-~~~~~~~~g~~~~~~R~~ 101 (411)
T 2jjn_A 29 ALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRVIE-GASPT-PGMIHEIDPPEHRALRKV 101 (411)
T ss_dssp HHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGGST-TCCCC-TTCGGGCCTTHHHHHHHH
T ss_pred ChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCcccccCC-ccccc-ccccccCCchHHHHHHHH
Confidence 57888999976 9998 67888999999999999999875 468888642211 11112 234556689999999999
Q ss_pred HHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHH-HHHHHHHHHHHHHhCccccCCCccchhhhhHHHHHHH
Q 036271 130 YLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEH-LSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQEM 208 (301)
Q Consensus 130 l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 208 (301)
++ ++|++++++.+.+.++++++++++. + ++++|+... ...+++++|+++ ||.+.+..+ ++.+.
T Consensus 102 ~~-~~fs~~~l~~~~~~i~~~~~~ll~~--~--~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~~----------~~~~~ 165 (411)
T 2jjn_A 102 VS-SAFTPRTISDLEPRIRDVTRSLLAD--A--GESFDLVDVLAFPLPVTIVAEL-LGLPPMDHE----------QFGDW 165 (411)
T ss_dssp HH-HHSCHHHHHTTHHHHHHHHHHHHHT--S--CSEEEHHHHTTTHHHHHHHHHH-HTCCSCCCS----------TTCCH
T ss_pred hh-hhcCHHHHHHHHHHHHHHHHHHHhc--C--CCceeHHHHHHHHHHHHHHHHH-cCCCHHHHH----------HHHHH
Confidence 95 8999999999999999999999998 2 458999855 568999999999 998874322 12223
Q ss_pred HHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcccCCCCc
Q 036271 209 LDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPNLD 288 (301)
Q Consensus 209 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~~~~ 288 (301)
...++... .|. +++ ....++..+..+.+.+++.++|+++++. . .+|+++.|++. .+ ++
T Consensus 166 ~~~~~~~~--------~~~--~~~-p~~~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~d~l~~ll~~-~~--~~ 223 (411)
T 2jjn_A 166 SGALVDIQ--------MDD--PTD-PALAERIADVLNPLTAYLKARCAERRAD----P----GDDLISRLVLA-EV--DG 223 (411)
T ss_dssp HHHHHHSC--------CSC--TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHHC-CB--TT
T ss_pred HHHHHhcc--------Ccc--ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHHhc-cc--CC
Confidence 33333211 110 110 1123345667778888999999888762 2 56999999983 32 23
Q ss_pred ccCcccchheec
Q 036271 289 VKLNYDSVRGFT 300 (301)
Q Consensus 289 ~~lt~~~i~~~~ 300 (301)
..+|+++|.+.+
T Consensus 224 ~~l~~~el~~~~ 235 (411)
T 2jjn_A 224 RALDDEEAANFS 235 (411)
T ss_dssp BCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 469999987654
No 44
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.84 E-value=1.4e-19 Score=165.14 Aligned_cols=213 Identities=12% Similarity=0.112 Sum_probs=155.4
Q ss_pred CCchHHHHHHHHhhCCceEEecC-------CccEEEecCHHHHHHHHHhCCcccccCCCC--C-cccceeccCcceeeCC
Q 036271 49 PLPHQSLHKLSQKYGQIMQLKFG-------SFPVVVAASAEMAKQFLQTHDHIFASRPQT--A-AGKHTTYNYLNLTWAP 118 (301)
Q Consensus 49 ~~~~~~~~~~~~~yG~i~~~~lg-------~~~~vvi~dp~~~keil~~~~~~f~~R~~~--~-~~~~~~~~~~~~~~~~ 118 (301)
.+|+..+.+|+ +||||+++++| +.++|+|+||+.++++|.++ +.|++|+.. . ....+... ..+++..
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~-~~~l~~~ 120 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEY-FGSMIVL 120 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHH-HHGGGGC
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhh-ccccccC
Confidence 35788899995 69999999986 67899999999999999875 478888632 1 11111111 1234456
Q ss_pred CChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc-CCceehHHHH-HHHHHHHHHHHHhCccccCCCccc
Q 036271 119 YGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS-GKPVVLKEHL-SRVTLSIISRTVLGKKYFSESKAE 196 (301)
Q Consensus 119 ~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~-g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~ 196 (301)
+|+.|+++||++. ++|++++++.+.+.++++++++++.|.+.. |+++|+.+.+ ..++++||+++ ||.+++ + .
T Consensus 121 dg~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~--~--~ 194 (435)
T 2wm5_A 121 DDPRHQRLRSIVS-RAFTPKVVARIEAAVRDRAHRLVSSMIANNPDRQADLVSELAGPLPLQIICDM-MGIPKA--D--H 194 (435)
T ss_dssp CTTHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEHHHHTTTHHHHHHHHHH-HTCCGG--G--H
T ss_pred CcHHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEehHHHHHHHHHHHHHHHH-cCCCHH--H--H
Confidence 7999999999995 899999999999999999999999998753 3489998766 78999999999 998763 1 1
Q ss_pred hhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHH
Q 036271 197 DSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVD 276 (301)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld 276 (301)
+.+.+....++... .|.+ .+ ..++..+..+.+.+++.++|+++++. . .+|+++
T Consensus 195 ------~~~~~~~~~~~~~~--------~p~~--~~---~~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~dll~ 247 (435)
T 2wm5_A 195 ------QRIFHWTNVILGFG--------DPDL--AT---DFDEFMQVSADIGAYATALAEDRRVN----H----HDDLTS 247 (435)
T ss_dssp ------HHHHHHHHHHHHTT--------CTTS--CC---CHHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHH
T ss_pred ------HHHHHHHHHHhccC--------Ccch--hh---hHHHHHHHHHHHHHHHHHHHHHHhcC----C----CCCHHH
Confidence 44555555444321 1321 11 12345667778889999999888763 2 579999
Q ss_pred HHhhcccCCCCcccCcccchheec
Q 036271 277 LLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 277 ~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
.|++. .++ +..+|+++|...+
T Consensus 248 ~ll~~-~~~--~~~ls~~ei~~~~ 268 (435)
T 2wm5_A 248 SLVEA-EVD--GERLSSREIASFF 268 (435)
T ss_dssp HHHHC-CBT--TBCCCHHHHHHHH
T ss_pred HHHhh-hcc--CCCCCHHHHHHHH
Confidence 99983 322 3469999987654
No 45
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.84 E-value=7.7e-20 Score=165.69 Aligned_cols=208 Identities=14% Similarity=0.152 Sum_probs=151.4
Q ss_pred CCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcc---c-ceeccCcceeeCCCChh
Q 036271 47 IGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAG---K-HTTYNYLNLTWAPYGPY 122 (301)
Q Consensus 47 ~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~---~-~~~~~~~~~~~~~~g~~ 122 (301)
+..+|+..+.+| ++||||+++++|+.++|+|+||+.++++|.++. |++|+..... . .+......+++..+|+.
T Consensus 18 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 94 (411)
T 3a4g_A 18 FWQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMMILMDPPD 94 (411)
T ss_dssp GTTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCGGGCCTTH
T ss_pred hhcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCcccccccccCCchH
Confidence 455789999999 999999999999999999999999999998763 8887642211 0 01110123355678999
Q ss_pred hHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHH-HHHHHHHHHHHHHhCccccCCCccchhhhh
Q 036271 123 WRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEH-LSRVTLSIISRTVLGKKYFSESKAEDSIVT 201 (301)
Q Consensus 123 Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 201 (301)
|+++||++. +.|++++++.+.+.+.++++++++.|.+ ++++|+... ...+++++|+.+ ||.+.+ + .
T Consensus 95 h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~vd~~~~~~~~~~~~vi~~~-~G~~~~--~--~----- 161 (411)
T 3a4g_A 95 HTRLRKLVG-RSFTVRRMNELEPRITEIADGLLAGLPT--DGPVDLMREYAFQIPVQVICEL-LGVPAE--D--R----- 161 (411)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHSCS--SSCEEHHHHTTTTHHHHHHHHH-HTCCGG--G--H-----
T ss_pred HHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh--cCCccHHHHHHHHhHHHHHHHH-hCCCHH--H--H-----
Confidence 999999995 8999999999999999999999999975 468999754 568999999975 998763 1 1
Q ss_pred HHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhc
Q 036271 202 LEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQM 281 (301)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~ 281 (301)
+.+.+.+..++.. .| | ++..+..+.+.+++.++|+++++. . .+|+++.|++
T Consensus 162 -~~~~~~~~~~~~~---------~p-----~-----~~~~~~~~~~~~~~~~~i~~r~~~----~----~~d~l~~ll~- 212 (411)
T 3a4g_A 162 -DDFSAWSSVLVDD---------SP-----A-----DDKNAAMGKLHGYLSDLLERKRTE----P----DDALLSSLLA- 212 (411)
T ss_dssp -HHHHHHHHHHTTS---------SC-----T-----TTHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHH-
T ss_pred -HHHHHHHHHHhcc---------CC-----H-----HHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHHH-
Confidence 3344443332210 12 1 123456677788999999888753 2 5699999998
Q ss_pred ccCCCCcccCcccchheec
Q 036271 282 ADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 282 ~~d~~~~~~lt~~~i~~~~ 300 (301)
..++ ++..+|+++|.+.+
T Consensus 213 ~~~~-~~~~ls~~ei~~~~ 230 (411)
T 3a4g_A 213 VSDE-DGDRLSQEELVAMA 230 (411)
T ss_dssp CCCT-TCCCCCHHHHHHHH
T ss_pred hhcc-CCCCCCHHHHHHHH
Confidence 3331 23469999987654
No 46
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.83 E-value=1.1e-19 Score=164.22 Aligned_cols=212 Identities=15% Similarity=0.162 Sum_probs=151.4
Q ss_pred CCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCccc---ceeccCcceeeCCCChhhHH
Q 036271 49 PLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGK---HTTYNYLNLTWAPYGPYWRQ 125 (301)
Q Consensus 49 ~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~---~~~~~~~~~~~~~~g~~Wk~ 125 (301)
.+|+..+.+| ++||||+++++|+.++|+++||+.++++|.++ ..|++|+...... ........+++..+|+.|++
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~~ 90 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMMLFQNQPDHRR 90 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSGGGCCTTHHHH
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcchhhcCCchHHH
Confidence 4678888888 58999999999999999999999999999877 5788877422211 11001123456678999999
Q ss_pred HHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHH-HHHHHHHHHHHHHhCccccCCCccchhhhhHHH
Q 036271 126 GRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEH-LSRVTLSIISRTVLGKKYFSESKAEDSIVTLEE 204 (301)
Q Consensus 126 ~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~ 204 (301)
+||++. ++|++++++.|.+.++++++.+++.|.+ +.++|+... ...+++++++.+ ||.+.+ + . +.
T Consensus 91 ~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~d~~~~~~~~~~~~vi~~~-~G~~~~--~--~------~~ 156 (404)
T 3ejb_B 91 LRTLAS-GAFTPRTTESYQPYIIETVHHLLDQVQG--KKKMEVISDFAFPLASFVIANI-IGVPEE--D--R------EQ 156 (404)
T ss_dssp HHHHHH-GGGSHHHHHTTHHHHHHHHHHHHHTTTT--TSEEEHHHHTHHHHHHHHHHHH-HTCCGG--G--H------HH
T ss_pred HHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhhh--cCCcchHHHHHHHHHHHHHHHH-cCCCHH--H--H------HH
Confidence 999995 8999999999999999999999999976 567897555 456999999995 897652 1 1 34
Q ss_pred HHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcccC
Q 036271 205 FQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADD 284 (301)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d 284 (301)
+.+....+..... .|+. ....++..+..+.+.+++.++|+++++. . .+|+++.|+. ..+
T Consensus 157 ~~~~~~~~~~~~~-------~p~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~d~l~~ll~-~~~ 215 (404)
T 3ejb_B 157 LKEWAASLIQTID-------FTRS-----RKALTEGNIMAVQAMAYFKELIQKRKRH----P----QQDMISMLLK-GRE 215 (404)
T ss_dssp HHHHHHHHHGGGS-------TTCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHH-C--
T ss_pred HHHHHHHHHHhcc-------CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhC----C----cchHHHHHHh-ccc
Confidence 5444444433211 1311 1123445667778888999999888742 2 5799999993 322
Q ss_pred CCCcccCcccchheec
Q 036271 285 PNLDVKLNYDSVRGFT 300 (301)
Q Consensus 285 ~~~~~~lt~~~i~~~~ 300 (301)
+..+|++++.+.+
T Consensus 216 ---~~~ls~~el~~~~ 228 (404)
T 3ejb_B 216 ---KDKLTEEEAASTC 228 (404)
T ss_dssp -----CCCHHHHHHHH
T ss_pred ---CCCCCHHHHHHHH
Confidence 3469999987653
No 47
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.83 E-value=8.2e-20 Score=164.73 Aligned_cols=207 Identities=12% Similarity=0.064 Sum_probs=153.7
Q ss_pred CCCCchHHHHHHHHhh--CCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccceeccCcceeeCCCChhhH
Q 036271 47 IGPLPHQSLHKLSQKY--GQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWR 124 (301)
Q Consensus 47 ~~~~~~~~~~~~~~~y--G~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~Wk 124 (301)
+..+|+..+.+|.++| |||+++++|+ ++++|+||+.+++++ ++.+.|++|+........ ..+..++++.+|+.|+
T Consensus 17 ~~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~g~~~~ 93 (398)
T 4fb2_A 17 PDGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYET-GEFELMMAGQDDPVHK 93 (398)
T ss_dssp TTSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC-----CCCTTTTCCTTHHH
T ss_pred hhcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCCC-cccccCcccCCchHHH
Confidence 3457899999999999 9999999986 699999999999999 556689888754432211 2223455677899999
Q ss_pred HHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHH-HHHHHHHHHHHHHHhCccccCCCccchhhhhHH
Q 036271 125 QGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKE-HLSRVTLSIISRTVLGKKYFSESKAEDSIVTLE 203 (301)
Q Consensus 125 ~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~-~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~ 203 (301)
++||++. ++|++++++.+.+.+.++++++++.|.+ +.++|+.. ....++++++++ +||.+.+ + . +
T Consensus 94 ~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-----~-~----~ 159 (398)
T 4fb2_A 94 KYRQLVA-KPFSPEATDLFTEQLRQSTNDLIDARIE--LGEGDAATWLANEIPARLTAI-LLGLPPE-----D-G----D 159 (398)
T ss_dssp HHHHHHH-TTTCHHHHHTTHHHHHHHHHHHHHTTTT--TTEEEHCCCCCTTHHHHHHHH-HTTSCGG-----G-H----H
T ss_pred HHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHHHH-HcCCCHH-----H-H----H
Confidence 9999995 8999999999999999999999999876 35688644 457899999999 7997552 1 1 4
Q ss_pred HHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhccc
Q 036271 204 EFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMAD 283 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~ 283 (301)
++.+.+..++. +. . .++..+..+.+.+++.++|++++++ . .+|+++.|++. .
T Consensus 160 ~~~~~~~~~~~-----------~~---~-----~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~d~l~~ll~~-~ 211 (398)
T 4fb2_A 160 TYRRWVWAITH-----------VE---N-----PEEGAEIFAELVAHARTLIAERRTN----P----GNDIMSRVIMS-K 211 (398)
T ss_dssp HHHHHHHHHHH-----------CC---C-----HHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHHC-C
T ss_pred HHHHHHHHHhc-----------CC---C-----HHHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHHHc-c
Confidence 45454444332 10 0 1245566778888999999888763 2 57999999983 3
Q ss_pred CCCCcccCcccchheec
Q 036271 284 DPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 284 d~~~~~~lt~~~i~~~~ 300 (301)
++ +..+|+++|...+
T Consensus 212 ~~--~~~l~~~~i~~~~ 226 (398)
T 4fb2_A 212 ID--GESLSEDDLIGFF 226 (398)
T ss_dssp BT--TBCCCHHHHHHHH
T ss_pred cC--CCCCCHHHHHHHH
Confidence 32 3469999987653
No 48
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.83 E-value=1.3e-19 Score=164.39 Aligned_cols=208 Identities=15% Similarity=0.171 Sum_probs=150.9
Q ss_pred CCCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCCCC-Ccccceec--cCcceeeCCCChh
Q 036271 47 IGPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRPQT-AAGKHTTY--NYLNLTWAPYGPY 122 (301)
Q Consensus 47 ~~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~~~-~~~~~~~~--~~~~~~~~~~g~~ 122 (301)
+..+|+..+.+| ++||||+++++ |+.++|+++||+.++++|.++ .|++++.. .....+.. + ...+++.+|+.
T Consensus 35 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~-~~~l~~~dg~~ 110 (417)
T 2y5n_A 35 HGLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMV-KGGLLSMDPPE 110 (417)
T ss_dssp SSCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCC-CCSGGGCCTTH
T ss_pred hccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccc-cccCccCCchH
Confidence 455788999999 89999999997 899999999999999999875 47766532 11111111 1 23345678999
Q ss_pred hHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCC-ceehHHHH-HHHHHHHHHHHHhCccccCCCccchhhh
Q 036271 123 WRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGK-PVVLKEHL-SRVTLSIISRTVLGKKYFSESKAEDSIV 200 (301)
Q Consensus 123 Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~-~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~ 200 (301)
|+++||++. +.|++++++.+.+.++++++++++.|.+ ++ ++|+...+ ..++++||+. +||.+.+ + .
T Consensus 111 h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~vdl~~~~~~~~~~~vi~~-~~G~~~~--~--~---- 178 (417)
T 2y5n_A 111 HSRLRRLVV-KAFTARRAESLRPRAREIAHELVDQMAA--TGQPADLVAMFARQLPVRVICE-LLGVPSA--D--H---- 178 (417)
T ss_dssp HHHHHHHHH-HHSCHHHHHHTHHHHHHHHHHHHHHHHH--HCSSEEHHHHTTTTHHHHHHHH-HHTCCGG--G--H----
T ss_pred HHHHHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh--CCCCeeHHHHHHHHhHHHHHHH-HcCCCHH--H--H----
Confidence 999999995 8999999999999999999999999975 44 89998776 4699999998 6998663 1 1
Q ss_pred hHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhh
Q 036271 201 TLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQ 280 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~ 280 (301)
+.+.+.+..++. .+. .| .++..+..+.+.+++.++|+++++. . .+|+++.|++
T Consensus 179 --~~~~~~~~~~~~---------~~~----~~----~~~~~~~~~~l~~~~~~~i~~r~~~----~----~~dll~~ll~ 231 (417)
T 2y5n_A 179 --DRFTRWSGAFLS---------TAE----VT----AEEMQEAAEQAYAYMGDLIDRRRKE----P----TDDLVSALVQ 231 (417)
T ss_dssp --HHHHHHHHTTST---------TCC----CC----HHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHH
T ss_pred --HHHHHHHHHHhc---------ccC----CC----HHHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHHh
Confidence 334333322111 010 01 1345566778888999999888753 2 4699999998
Q ss_pred cccCCCCcccCcccchheec
Q 036271 281 MADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 281 ~~~d~~~~~~lt~~~i~~~~ 300 (301)
..+ ++..+|+++|.+.+
T Consensus 232 -~~~--~~~~ls~~ei~~~~ 248 (417)
T 2y5n_A 232 -ARD--QQDSLSEQELLDLA 248 (417)
T ss_dssp -CCB--TTBCCCHHHHHHHH
T ss_pred -hhc--cCCCCCHHHHHHHH
Confidence 333 23469999987654
No 49
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.83 E-value=1.5e-19 Score=163.35 Aligned_cols=209 Identities=14% Similarity=0.140 Sum_probs=153.5
Q ss_pred CCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCC--C----ccc---ce-ec----cCc
Q 036271 47 IGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQT--A----AGK---HT-TY----NYL 112 (301)
Q Consensus 47 ~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~--~----~~~---~~-~~----~~~ 112 (301)
+..+|+..+.+| ++||||+++++|+.++|+++||+.++++|.++ .|++|+.. . ... .+ .. .+.
T Consensus 12 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (404)
T 1z8o_A 12 FHVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFAT 88 (404)
T ss_dssp GTSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSS
T ss_pred cccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhccc
Confidence 345689999999 99999999999999999999999999999876 58877643 1 100 11 11 122
Q ss_pred ceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccC
Q 036271 113 NLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFS 191 (301)
Q Consensus 113 ~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~ 191 (301)
+++..+|+.|+++||+++ ++|++++++.+.+.+.++++++++.|.+ ++++|+...+ ..+++++|+.+ ||.+.+.
T Consensus 89 -~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~ 163 (404)
T 1z8o_A 89 -NMGTSDPPTHTRLRKLVS-QEFTVRRVEAMRPRVEQITAELLDEVGD--SGVVDIVDRFAHPLPIKVICEL-LGVDEKY 163 (404)
T ss_dssp -SGGGCCTTHHHHHHHHHH-TTSCHHHHHHTHHHHHHHHHHHHHTSCS--SSEEEHHHHTTTHHHHHHHHHH-TTCCGGG
T ss_pred -ccccCCCcHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhhhh--cCCcchHHHHhHHHHHHHHHHH-hCCCHHH
Confidence 345668999999999995 8999999999999999999999999875 6789998655 68999999985 9986632
Q ss_pred CCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 036271 192 ESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVP 271 (301)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~ 271 (301)
. +.+.+.+..++. . ..| . .++..+..+.+.+++.++|++++++ . .
T Consensus 164 ~----------~~~~~~~~~~~~----~----~~p--------~-~~~~~~~~~~~~~~~~~~i~~r~~~----~----~ 208 (404)
T 1z8o_A 164 R----------GEFGRWSSEILV----M----DPE--------R-AEQRGQAAREVVNFILDLVERRRTE----P----G 208 (404)
T ss_dssp T----------TTHHHHHHHHHC----C----CGG--------G-HHHHHHHHHHHHHHHHHHHHHHHHS----C----C
T ss_pred H----------HHHHHHHHHHhc----c----CCh--------h-HHHHHHHHHHHHHHHHHHHHHHHhC----C----C
Confidence 1 234444443322 1 011 1 2345567778888999999888753 2 5
Q ss_pred CCHHHHHhhcccCCCCcccCcccchheec
Q 036271 272 KDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 272 ~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+|+++.|++...++ +..+|+++|.+.+
T Consensus 209 ~dll~~ll~~~~~~--~~~l~~~ei~~~~ 235 (404)
T 1z8o_A 209 DDLLSALIRVQDDD--DGRLSADELTSIA 235 (404)
T ss_dssp SSHHHHHHHCEETT--TEECCHHHHHHHH
T ss_pred CCHHHHHHhhhccc--CCCCCHHHHHHHH
Confidence 69999999831332 3469999987654
No 50
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.82 E-value=1.6e-19 Score=163.73 Aligned_cols=209 Identities=16% Similarity=0.165 Sum_probs=149.9
Q ss_pred CCCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCCCCCccc---ce-ec-----cCcceee
Q 036271 47 IGPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGK---HT-TY-----NYLNLTW 116 (301)
Q Consensus 47 ~~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~---~~-~~-----~~~~~~~ 116 (301)
+..+|+..+.+|+ +||||+++++ |+.++|+++||+.++++|.++ .|++|+..+... .. .. ++.++++
T Consensus 20 ~~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (413)
T 2z36_A 20 CPFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLML 96 (413)
T ss_dssp BTTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCGG
T ss_pred cccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCcccccccccccccccccccccc
Confidence 4557889999997 7899999997 899999999999999999874 588776322111 01 11 1234155
Q ss_pred CCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHH-HHHHHHHHHHHhCccccCCCcc
Q 036271 117 APYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLS-RVTLSIISRTVLGKKYFSESKA 195 (301)
Q Consensus 117 ~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~-~~t~~ii~~~~fG~~~~~~~~~ 195 (301)
..+|+.|+++||++. +.|++++++.+.+.++++++++++.|.+..++++|+...+. .+++++|+.+ ||.+.+ +
T Consensus 97 ~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~--~-- 170 (413)
T 2z36_A 97 GMDGAEHSAARRPVI-GEFTVKRLAALRPRIQDIVDHFIDDMLATDQRPVDLVQALSLPVPSLVICEL-LGVPYT--D-- 170 (413)
T ss_dssp GCCHHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTTCSCSSEEHHHHTTTHHHHHHHHHH-HTCCGG--G--
T ss_pred ccCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHhhhhHHHHHHHH-hCCCHH--H--
Confidence 667999999999995 89999999999999999999999999742257899886655 6999999995 998653 1
Q ss_pred chhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHH
Q 036271 196 EDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMV 275 (301)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~l 275 (301)
. +.+......++ . .. .+ ++..+..+.+..++.++|+++++. . .+|++
T Consensus 171 ~------~~~~~~~~~~~----~-----~~--------~~--~~~~~~~~~~~~~~~~~i~~r~~~----~----~~dll 217 (413)
T 2z36_A 171 H------DFFQSRTTMMV----S-----RT--------SM--EDRRRAFAELRAYIDDLITRKESE----P----GDDLF 217 (413)
T ss_dssp H------HHHHHHHHHTT----C-----SS--------CH--HHHHHHHHHHHHHHHHHHHHHHSS----C----CSSHH
T ss_pred H------HHHHHHHHHHh----c-----cc--------Cc--HHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHH
Confidence 1 33333322111 0 00 00 344566777888999999887653 2 56999
Q ss_pred HHHhhcccCCCCcccCcccchheec
Q 036271 276 DLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 276 d~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+.|++. .+ ++..+|+++|.+.+
T Consensus 218 ~~ll~~-~~--~~~~ls~~ei~~~~ 239 (413)
T 2z36_A 218 SRQIAR-QR--QEGTLDHAGLVSLA 239 (413)
T ss_dssp HHHHHH-HH--HHSCCCHHHHHHHH
T ss_pred HHHHHh-hc--CCCCCCHHHHHHHH
Confidence 999983 22 13468999887654
No 51
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.81 E-value=3.2e-19 Score=161.61 Aligned_cols=210 Identities=14% Similarity=0.144 Sum_probs=151.2
Q ss_pred cCCCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCCC-CCcc--cceec-------cC-cc
Q 036271 46 LIGPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRPQ-TAAG--KHTTY-------NY-LN 113 (301)
Q Consensus 46 ~~~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~~-~~~~--~~~~~-------~~-~~ 113 (301)
.+...|+..+.+| ++||||+++++ |+.++|+++||+.++++|.++. +++++. .... ..... .. .+
T Consensus 14 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (411)
T 1gwi_A 14 PFVTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGR 90 (411)
T ss_dssp TTCSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCS
T ss_pred cccCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccc
Confidence 3455688899999 99999999998 8999999999999999998754 444431 1000 00000 01 23
Q ss_pred eeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHH-HHHHHHHHHHHhCccccCC
Q 036271 114 LTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLS-RVTLSIISRTVLGKKYFSE 192 (301)
Q Consensus 114 ~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~-~~t~~ii~~~~fG~~~~~~ 192 (301)
++++.+|+.|+++||++. ++|++++++.+.+.++++++++++.|.+ .|+++|+.+.+. .++++||+. +||.+.+
T Consensus 91 ~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-- 165 (411)
T 1gwi_A 91 SMLTVDGAEHRRLRTLVA-QALTVRRVEHMRGRITELTDRLLDELPA-DGGVVDLKAAFAYPLPMYVVAD-LMGIEEA-- 165 (411)
T ss_dssp SGGGCCHHHHHHHHHHHT-TTSCHHHHHTTHHHHHHHHHHHHHTSCC-SCCCEEHHHHTTTHHHHHHHHH-HHTCCGG--
T ss_pred ccccCCcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcchHHHHhhHHHHHHHHH-HhCCCHH--
Confidence 456678999999999995 8999999999999999999999999973 267899998876 599999996 7998653
Q ss_pred CccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 036271 193 SKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPK 272 (301)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~ 272 (301)
+ . +.+.+.+..++.. .. + .++..+..+.+.+++.++|+++++. . .+
T Consensus 166 ~--~------~~~~~~~~~~~~~--------~~------~----~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~ 211 (411)
T 1gwi_A 166 R--L------PRLKVLFEKFFST--------QT------P----PEEVVATLTELASIMTDTVAAKRAA----P----GD 211 (411)
T ss_dssp G--H------HHHHHHHHHHHCT--------TS------C----HHHHHHHHHHHHHHHHHHHHHHHHS----C----CS
T ss_pred H--H------HHHHHHHHHHhcc--------CC------C----hHHHHHHHHHHHHHHHHHHHHHHhC----C----CC
Confidence 1 1 4454444433321 00 0 1334566777888999999888753 2 46
Q ss_pred CHHHHHhhcccCCCCcccCcccchheec
Q 036271 273 DMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 273 d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
|+++.|++. .++ +..+|+++|.+.+
T Consensus 212 d~l~~ll~~-~~~--~~~l~~~~i~~~~ 236 (411)
T 1gwi_A 212 DLTSALIQA-SEN--GDHLTDAEIVSTL 236 (411)
T ss_dssp SHHHHHHHC-CBT--TBCCCHHHHHHHH
T ss_pred CHHHHHHHh-ccc--CCCCCHHHHHHHH
Confidence 999999983 332 3469999987654
No 52
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.81 E-value=1.6e-20 Score=172.75 Aligned_cols=155 Identities=15% Similarity=0.082 Sum_probs=115.7
Q ss_pred cccCCCCCCCCC-CccccccccCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC-c
Q 036271 26 RRALKFPAGPKP-WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA-A 103 (301)
Q Consensus 26 ~~~~~~ppgP~~-~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~-~ 103 (301)
++..+.||||++ +|++||++++...|+..+.+|+++|||||++++|+.+++|++||+.+++++.++.. ++.++... .
T Consensus 14 ~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~~ 92 (475)
T 3b98_A 14 TRRRNEPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQVL 92 (475)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHHH
T ss_pred ccCCCCCCCCCCCcchHHhHHHHhhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHHH
Confidence 455678999998 99999998875568999999999999999999999999999999999999977543 33222111 1
Q ss_pred ccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc----CCceehHHHHHHHHHHH
Q 036271 104 GKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS----GKPVVLKEHLSRVTLSI 179 (301)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~----g~~vd~~~~~~~~t~~i 179 (301)
.... .+ .+. +..+|+.| |+++. ++|+++.++.+.+.+.+++..+++.+.... ...+++...+..+++++
T Consensus 93 ~~~~-~g-~~~-~~~~~~~~---R~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (475)
T 3b98_A 93 MKRI-FN-MIL-PSHNPESE---KKRAE-MHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKT 165 (475)
T ss_dssp HHHT-TC-CCC-TTCCHHHH---HHHHH-HHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHHHHH
T ss_pred HHHH-hC-CCC-CCCChHHH---HHHHH-HHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHHHHH
Confidence 1111 12 222 34557765 56764 789999999999999999988887765421 12567888888888888
Q ss_pred HHHHHhCcc
Q 036271 180 ISRTVLGKK 188 (301)
Q Consensus 180 i~~~~fG~~ 188 (301)
++...||.+
T Consensus 166 ~~~~~~g~~ 174 (475)
T 3b98_A 166 GYLTVFGAE 174 (475)
T ss_dssp HHHHHHCCT
T ss_pred hhhheeCCc
Confidence 888888843
No 53
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.81 E-value=9.2e-19 Score=157.87 Aligned_cols=207 Identities=12% Similarity=0.118 Sum_probs=150.5
Q ss_pred CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccceeccCcceeeCCCChhhHHHH
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGR 127 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 127 (301)
..+|+..+.+|.+ ||||+++. . ++|+|+||+.++++|.++. .|++|+... .... . .++++..+|+.|+++|
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~~-~f~~~~~~~-~~~~--~-~~~l~~~~g~~h~~~R 87 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQPE-LFSNAGGIR-PDQP--A-LPMMIDMDDPAHLLRR 87 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCTT-TEESTTCSS-TTSC--C-CSSGGGCCTTHHHHHH
T ss_pred ccChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCcc-cccCccccC-Cccc--c-cccccccCchHHHHHH
Confidence 3568889999987 99998554 4 8999999999999997654 688886432 1112 1 2345566799999999
Q ss_pred HHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehH-HHHHHHHHHHHHHHHhCccccCCCccchhhhhHHHHH
Q 036271 128 KLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLK-EHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQ 206 (301)
Q Consensus 128 k~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~-~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~ 206 (301)
|++. ++|++++++.+.+.+.++++++++.|.+ +.++|+. +....++++||+++ ||.+.+ + . +.+.
T Consensus 88 ~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~vi~~~-fG~~~~--~--~------~~~~ 153 (398)
T 2xkr_A 88 KLVN-AGFTRKRVKDKEASIAALCDTLIDAVCE--RGECDFVRDLAAPLPMAVIGDM-LGVRPE--Q--R------DMFL 153 (398)
T ss_dssp HHHG-GGSCHHHHHTTHHHHHHHHHHHHHTTTT--TSEEEHHHHTTTHHHHHHHHHH-HTCCGG--G--H------HHHH
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHhhhh--cCCccHHHHHHHHHHHHHHHHH-hCCCHH--H--H------HHHH
Confidence 9994 8999999999999999999999999976 3489998 45568999999999 998763 1 1 3455
Q ss_pred HHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcccCCC
Q 036271 207 EMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPN 286 (301)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~~ 286 (301)
+....++..... .++| ...++..+..+.+.+++.++|+++++. . .+|+++.|++. .+
T Consensus 154 ~~~~~~~~~~~~----~~~p--------~~~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~dll~~ll~~-~~-- 210 (398)
T 2xkr_A 154 RWSDDLVTFLSS----HVSQ--------EDFQITMDAFAAYNDFTRATIAARRAD----P----TDDLVSVLVSS-EV-- 210 (398)
T ss_dssp HHHHHHHHHHTS----CCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHHC-CB--
T ss_pred HHHHHHHhccCc----ccch--------hhHHHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHHHh-hc--
Confidence 555544432111 1122 122345567778889999999888752 2 57999999983 32
Q ss_pred CcccCcccchheec
Q 036271 287 LDVKLNYDSVRGFT 300 (301)
Q Consensus 287 ~~~~lt~~~i~~~~ 300 (301)
++..+|+++|.+.+
T Consensus 211 ~~~~ls~~ei~~~~ 224 (398)
T 2xkr_A 211 DGERLSDDELVMET 224 (398)
T ss_dssp TTBCCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHH
Confidence 23469999987654
No 54
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.81 E-value=5e-19 Score=160.46 Aligned_cols=208 Identities=12% Similarity=0.047 Sum_probs=147.7
Q ss_pred CCchHHHHHHHHhhCCce-----EEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC-ccc--ce-e-ccCcceeeCC
Q 036271 49 PLPHQSLHKLSQKYGQIM-----QLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA-AGK--HT-T-YNYLNLTWAP 118 (301)
Q Consensus 49 ~~~~~~~~~~~~~yG~i~-----~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~-~~~--~~-~-~~~~~~~~~~ 118 (301)
.+|+..+.+|. +||||+ ++++ .++++|+||+.++++|.++ ..|++|+... ... .+ . .+..+ ++..
T Consensus 25 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 99 (414)
T 2uuq_A 25 PNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPP-MVMQ 99 (414)
T ss_dssp TCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCC-GGGC
T ss_pred cCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccc-cccC
Confidence 46888898885 799999 8887 6899999999999999886 5688886432 111 11 1 12233 4456
Q ss_pred CChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehH-HHHHHHHHHHHHHHHhCccccCCCccch
Q 036271 119 YGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLK-EHLSRVTLSIISRTVLGKKYFSESKAED 197 (301)
Q Consensus 119 ~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~-~~~~~~t~~ii~~~~fG~~~~~~~~~~~ 197 (301)
+|+.|+++||++. ++|++++++.|.+.++++++++++.|.+. +++|+. +.+..+++++|++ +||.+++ + .
T Consensus 100 ~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~vdl~~~~~~~~~~~vi~~-~~G~~~~--~--~- 170 (414)
T 2uuq_A 100 DPPVHTEFRKLVS-RGFTPRQVETVEPTVRKFVVERLEKLRAN--GGGDIVTELFKPLPSMVVAH-YLGVPEE--D--W- 170 (414)
T ss_dssp CTTHHHHHHHHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHT--TEEEHHHHTTTHHHHHHHHH-HTTCCGG--G--H-
T ss_pred CchhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHhHHHHHHH-HhCCCHH--H--H-
Confidence 7999999999995 89999999999999999999999999873 479997 5567999999999 6998774 1 1
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccchhc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHH
Q 036271 198 SIVTLEEFQEMLDELFLLNGVLNIGDWI-PWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVD 276 (301)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld 276 (301)
+.+.+....++.. .++ |.. ++..+..+.+.+++.++|+++++. . .+|+++
T Consensus 171 -----~~~~~~~~~~~~~-------~~~~p~~---------~~~~~~~~~~~~~~~~~i~~r~~~----~----~~dll~ 221 (414)
T 2uuq_A 171 -----TQFDGWTQAIVAA-------NAVDGAT---------TGALDAVGSMMAYFTGLIERRRTE----P----ADDAIS 221 (414)
T ss_dssp -----HHHHHHHHHHHHH-------HHC--------------CCHHHHHHHHHHHHHHHHHHTTS----C----CSSHHH
T ss_pred -----HHHHHHHHHHHhh-------cccCCch---------hHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHH
Confidence 3444444433321 112 311 112345666778888899877642 2 579999
Q ss_pred HHhhcccCCCCcccCcccchheec
Q 036271 277 LLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 277 ~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
.|++. .+++++..+|+++|.+.+
T Consensus 222 ~ll~~-~~~~~~~~ls~~ei~~~~ 244 (414)
T 2uuq_A 222 HLVAA-GVGADGDTAGTLSILAFT 244 (414)
T ss_dssp HHHHT-TTTCTTCHHHHHHHHHHH
T ss_pred HHHhc-ccccCCCCCCHHHHHHHH
Confidence 99984 331124468999887654
No 55
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.81 E-value=2.1e-19 Score=163.25 Aligned_cols=214 Identities=14% Similarity=0.106 Sum_probs=154.0
Q ss_pred CCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCC-----CC---cccceeccC-cceeeC
Q 036271 47 IGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQ-----TA---AGKHTTYNY-LNLTWA 117 (301)
Q Consensus 47 ~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~-----~~---~~~~~~~~~-~~~~~~ 117 (301)
+..+|+..+.+| ++||||++ + |+.++|+++||+.++++|.++. |++|+. .. ....+. .. ..+++.
T Consensus 24 ~~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 97 (419)
T 1q5d_A 24 YAEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELS-DMKKYGLFG 97 (419)
T ss_dssp TTTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGH-HHHHHSTTT
T ss_pred hhhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhh-hhccccccc
Confidence 345788999999 78999999 6 7789999999999999998774 888862 11 111111 00 123456
Q ss_pred CCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHH-HHHHHHHHHHHHHHhCccccCCCccc
Q 036271 118 PYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKE-HLSRVTLSIISRTVLGKKYFSESKAE 196 (301)
Q Consensus 118 ~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~-~~~~~t~~ii~~~~fG~~~~~~~~~~ 196 (301)
.+|+.|+++||++. ++|++++++.+.+.++++++++++.|.+ ++++|+.. ....++++||+++ ||.+.+ + .
T Consensus 98 ~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~d~~~~~~~~~~~~vi~~~-fG~~~~--~--~ 169 (419)
T 1q5d_A 98 LPPEDHARVRKLVN-PSFTSRAIDLLRAEIQRTVDQLLDARSG--QEEFDVVRDYAEGIPMRAISAL-LKVPAE--C--D 169 (419)
T ss_dssp SCHHHHHHHHHHHG-GGGSHHHHGGGHHHHHHHHHHHHHHHTT--SSCEETTTTTGGGSHHHHHHHH-TTCCGG--G--H
T ss_pred CCchHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHH-hCCCHH--H--H
Confidence 67999999999995 8999999999999999999999999976 34899875 4589999999998 998763 1 1
Q ss_pred hhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC-CHH
Q 036271 197 DSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPK-DMV 275 (301)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~-d~l 275 (301)
+.+.+....++.... ...+|+.. ...++..+....+.+++.++|++++++ . .+ |++
T Consensus 170 ------~~~~~~~~~~~~~~~----~~~~P~~~-----~~~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~~dll 226 (419)
T 1q5d_A 170 ------EKFRRFGSATARALG----VGLVPRVD-----EETKTLVASVTEGLALLHGVLDERRRN----P----LENDVL 226 (419)
T ss_dssp ------HHHHHHHHHHHHHTT----TTTSSCCC-----SCHHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSCHH
T ss_pred ------HHHHHHHHHHHHhcc----cccccCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHhC----C----CCCCHH
Confidence 345555555444321 12344221 122455667778889999999888753 2 45 999
Q ss_pred HHHhhcccCCCCcccCcccchheec
Q 036271 276 DLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 276 d~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+.|++. .++ +..+|+++|.+.+
T Consensus 227 ~~ll~~-~~~--~~~l~~~ei~~~~ 248 (419)
T 1q5d_A 227 TMLLQA-EAD--GSRLSTKELVALV 248 (419)
T ss_dssp HHHHHH-HHS--STTCCHHHHHHHH
T ss_pred HHHHhh-hcc--CCCCCHHHHHHHH
Confidence 999984 321 3469999987654
No 56
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.80 E-value=1e-18 Score=158.73 Aligned_cols=229 Identities=11% Similarity=0.096 Sum_probs=158.2
Q ss_pred CCCCCCCCc--ccccccc-----CCCCchHHHHHHHHhhC-CceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC
Q 036271 31 FPAGPKPWP--IIGNLNL-----IGPLPHQSLHKLSQKYG-QIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA 102 (301)
Q Consensus 31 ~ppgP~~~P--llGnl~~-----~~~~~~~~~~~~~~~yG-~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~ 102 (301)
.+|.|+.+| .+..+.. +..+|+..+.++.+++| ||+++..|+ ++++|+||+.++++| ++.+.|++|+...
T Consensus 13 ~~~~p~~~p~~~~~~~~~~~~~~~~~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~ 90 (421)
T 3lxh_A 13 RVAPPPHVPGHLIREIDAYDLDGLEQGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIY-RSPERFSSRVIWV 90 (421)
T ss_dssp CCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHH-TCTTTEETTCCSS
T ss_pred CCCCCCCCChhhccCCCCCCchhhhcChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHH-cChhhccCCcccC
Confidence 456666666 1333222 23468889988877666 899999876 599999999999999 4456788887422
Q ss_pred cccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHH
Q 036271 103 AGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIIS 181 (301)
Q Consensus 103 ~~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~ 181 (301)
.. ........++++.+|+.|+++||++. ++|++++++.+.+.+.++++++++.|.+ ++++|+...+ ..++.++++
T Consensus 91 ~~-~~~~~~~~~~~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~v~~ 166 (421)
T 3lxh_A 91 PR-EAGEAYDMVPTKLDPPEHTPYRKAID-KGLNLAEIRKLEDQIRTIAVEIIEGFAD--RGHCEFGSEFSTVFPVRVFL 166 (421)
T ss_dssp SH-HHHHHCCCTTTTCCTTTHHHHHHHHH-HHHSHHHHHTTHHHHHHHHHHHHHTTTT--TSEEEHHHHTTTTHHHHHHH
T ss_pred Cc-ccccccccCCccCCcHHHHHHHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHhh--cCCeehHHHHHHHHHHHHHH
Confidence 21 11111223456778999999999995 8999999999999999999999999975 4578875555 567888887
Q ss_pred HHHhCccccCCCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036271 182 RTVLGKKYFSESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKAN 261 (301)
Q Consensus 182 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~ 261 (301)
. +||.+.+ + . +.+.+.+..++... ..+|. ...++..+..+.+.+++.++|+++++.
T Consensus 167 ~-~~G~~~~-----~-~----~~~~~~~~~~~~~~------~~~p~-------~~~~~~~~~~~~~~~~~~~~i~~r~~~ 222 (421)
T 3lxh_A 167 A-LAGLPVE-----D-A----TKLGLLANEMTRPS------GNTPE-------EQGRSLEAANKGFFEYVAPIIAARRGG 222 (421)
T ss_dssp H-HHTCCGG-----G-H----HHHHHHHHHHHSCC------CSSHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred H-HcCCCHH-----H-H----HHHHHHHHHHhccc------cCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6 5897542 1 1 44555555443211 12221 113456677888889999999887653
Q ss_pred hcCCCCCCCCCCHHHHHhhcccCCCCcccCcccchheec
Q 036271 262 RKGNLKDFVPKDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 262 ~~~~~~~~~~~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
. .+|+++.|++. .++ +..+|+++|.+.+
T Consensus 223 ----~----~~dll~~ll~~-~~~--~~~l~~~ei~~~~ 250 (421)
T 3lxh_A 223 ----S----GTDLITRILNV-EID--GKPMPDDRALGLV 250 (421)
T ss_dssp ----C----CCSHHHHHHTS-CBT--TBCCCHHHHHHHH
T ss_pred ----C----CCCHHHHHHhh-hcc--CCCCCHHHHHHHH
Confidence 2 67999999983 332 4469999987654
No 57
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.80 E-value=3.9e-19 Score=161.29 Aligned_cols=215 Identities=12% Similarity=0.071 Sum_probs=149.7
Q ss_pred CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCccccee-------ccCcceeeCCCC
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTT-------YNYLNLTWAPYG 120 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~-------~~~~~~~~~~~g 120 (301)
..+|+..+.+| ++||||+++++| +++|+||+.++++|.+. ..+++|+......... ....++++..+|
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg 102 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFLFLDP 102 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGGGCCT
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchhhcCC
Confidence 56789999888 688999998887 99999999999999664 3456665322111110 011234556679
Q ss_pred hhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHH-HHHHHHHHHHHHHhCccccCCCccchhh
Q 036271 121 PYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEH-LSRVTLSIISRTVLGKKYFSESKAEDSI 199 (301)
Q Consensus 121 ~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~ 199 (301)
+.|+++||++. ++|++++++.|.+.++++++++++ +.+ +.++|+... ...+++++|++ +||.+.+ ..
T Consensus 103 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~-l~~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~----~~--- 170 (418)
T 3r9b_A 103 PDHTRLRGLVS-KAFAPRVIKRLEPEITALVDQLLD-AVD--GPEFNLIDNLAYPLPVAVICR-LLGVPIE----DE--- 170 (418)
T ss_dssp THHHHHHHHHH-GGGSHHHHGGGHHHHHHHHHHHHH-TCC--SSEEEHHHHTTTHHHHHHHHH-HHTCCGG----GH---
T ss_pred chHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHh-hhc--cCCeehHHHHhCcCCHHHHHH-HcCCCHH----HH---
Confidence 99999999995 999999999999999999999999 754 458997554 46899999999 8998763 11
Q ss_pred hhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHh
Q 036271 200 VTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLL 279 (301)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL 279 (301)
..+.+....+..... .++.+.+++. ...++..+..+.+.+++.++|++++++ . .+|+++.|+
T Consensus 171 ---~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~~r~~~----~----~~d~l~~ll 232 (418)
T 3r9b_A 171 ---PKFSRASALLAAALD------PFLALTGETS-DLFDEQMKAGMWLRDYLRALIDERRRT----P----GEDLMSGLV 232 (418)
T ss_dssp ---HHHHHHHHHHHHTTS------CHHHHHSSCC-TTHHHHHHHHHHHHHHHHHHHHHTTTS----C----CSSHHHHHH
T ss_pred ---HHHHHHHHHHHhhcC------ccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHhC----C----CccHHHHHH
Confidence 344444444332211 1111122222 234456677888889999999877542 2 579999999
Q ss_pred hcccCCCCcccCcccchheec
Q 036271 280 QMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 280 ~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+. .+ ++..+|+++|.+.+
T Consensus 233 ~~-~~--~~~~ls~~ei~~~~ 250 (418)
T 3r9b_A 233 AV-EE--SGDQLTEDEIIATC 250 (418)
T ss_dssp HH-HH--HSSSCCHHHHHHHH
T ss_pred Hh-hh--ccCCCCHHHHHHHH
Confidence 84 22 13359999987654
No 58
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.79 E-value=9.4e-19 Score=159.20 Aligned_cols=212 Identities=17% Similarity=0.101 Sum_probs=146.1
Q ss_pred CCchHHHHHHHHhhCCceEEecC--CccEEEecCHHHHHHHHHhCCcccccCCCC--------C-ccc----ce-eccCc
Q 036271 49 PLPHQSLHKLSQKYGQIMQLKFG--SFPVVVAASAEMAKQFLQTHDHIFASRPQT--------A-AGK----HT-TYNYL 112 (301)
Q Consensus 49 ~~~~~~~~~~~~~yG~i~~~~lg--~~~~vvi~dp~~~keil~~~~~~f~~R~~~--------~-~~~----~~-~~~~~ 112 (301)
.+|+..+.+|. +||||+++++| +.++++|+||+.++++|.++ .|++|+.. . ... .. ..++
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVE- 95 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHT-
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccccccc-
Confidence 45788898886 49999999998 78999999999999999875 68888641 1 000 00 0111
Q ss_pred ceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHH-HHHHHHHHHHHHHhCccccC
Q 036271 113 NLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEH-LSRVTLSIISRTVLGKKYFS 191 (301)
Q Consensus 113 ~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~-~~~~t~~ii~~~~fG~~~~~ 191 (301)
.+++..+|+.|+++||++. ++|++++++.+.+.++++++++++.|.+. +++|+... ...+++++|+++ ||.+.+
T Consensus 96 ~~l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--g~~dl~~~~~~~~~~~vi~~~-~G~~~~- 170 (425)
T 2z3t_A 96 NWLVFLDPPHHTELRSLLT-TEFSPSIVTGLRPRIAELASALLDRLRAQ--RRPDLVEGFAAPLPILVISAL-LGIPEE- 170 (425)
T ss_dssp TCGGGCCHHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTTS--SSCBHHHHTTTHHHHHHHHHH-HTCCGG-
T ss_pred cccccCCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHH-hCCCHH-
Confidence 2344567999999999995 89999999999999999999999999763 38998875 478999999998 998763
Q ss_pred CCccchhhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 036271 192 ESKAEDSIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVP 271 (301)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~ 271 (301)
+ . +.+.+....+... .+.+| ++. ...++..+..+.+.+++.++|++++++ . .
T Consensus 171 -~--~------~~~~~~~~~~~~~------~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~i~~r~~~----~----~ 222 (425)
T 2z3t_A 171 -D--H------TWLRANAVALQEA------STTRA----RDG-RGYARAEAASQEFTRYFRREVDRRGGD----D----R 222 (425)
T ss_dssp -G--H------HHHHHHHHHHHTT------CTTCC----C----HHHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred -H--H------HHHHHHHHHHHhh------ccccC----CCH-HHHHHHHHHHHHHHHHHHHHHHHHHhC----C----C
Confidence 1 1 3444444443321 11222 111 112345566777888888888776542 2 5
Q ss_pred CCHHHHHhhcccCCCCcccCcccchheec
Q 036271 272 KDMVDLLLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 272 ~d~ld~lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+|+++.|++. .++ +..+|+++|.+.+
T Consensus 223 ~dll~~ll~~-~~~--~~~ls~~el~~~~ 248 (425)
T 2z3t_A 223 DDLLTLLVRA-RDT--GSPLSVDGIVGTC 248 (425)
T ss_dssp -CHHHHHHHH-HHT--TCCCCHHHHHHHH
T ss_pred CCHHHHHHHh-hcc--CCCCCHHHHHHHH
Confidence 6999999984 322 3468999987654
No 59
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.78 E-value=5.3e-18 Score=153.21 Aligned_cols=201 Identities=17% Similarity=0.178 Sum_probs=146.4
Q ss_pred CCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCCCCC-cccceeccCcce-eeCCCC----
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRPQTA-AGKHTTYNYLNL-TWAPYG---- 120 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~~~~-~~~~~~~~~~~~-~~~~~g---- 120 (301)
..+|+..+.+| ++||||+++++ |+.++|+|+||+.+++++.++ .|++++... .......+ .++ +++.+|
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~-~~~~l~~~~g~~~~ 100 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVRS-PFLDLLISDADAES 100 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSCC-HHHHTTCBCSCHHH
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCccccc-ccccceeeCCCCCC
Confidence 44678899999 89999999997 899999999999999999874 477665432 11111111 231 556679
Q ss_pred --hhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccCCCccch
Q 036271 121 --PYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFSESKAED 197 (301)
Q Consensus 121 --~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~ 197 (301)
+.|+++||++. +.|++++++.+.+.++++++++++.|.+. |+++|+...+ ..+++++|+. +||.+.+ + .
T Consensus 101 ~~~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-g~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~--~- 172 (404)
T 2xbk_A 101 GRRQHAETRRLLT-PLFSARRVLEMQPKVEEAADTLLDAFIAQ-GPPGDLHGELTVPFALTVLCE-VIGVPPQ--R--R- 172 (404)
T ss_dssp HHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHT-CSSEEHHHHTHHHHHHHHHHH-HHTCCGG--G--H-
T ss_pred CCchHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeHHHHHHHHHHHHHHHH-HhCCCHH--H--H-
Confidence 99999999995 89999999999999999999999999853 6689998766 5799999997 7998663 1 1
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHH
Q 036271 198 SIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDL 277 (301)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~ 277 (301)
+.+.+.+..++.. . .| | +..+..+.+.+++.++|+++++. . .+|+++.
T Consensus 173 -----~~~~~~~~~~~~~---~-----~~-----p------~~~~~~~~~~~~~~~~i~~r~~~----~----~~dll~~ 220 (404)
T 2xbk_A 173 -----AELTTLLAGIAKL---D-----DR-----E------GAVRAQDDLFGYVAGLVEHKRAE----P----GPDIISR 220 (404)
T ss_dssp -----HHHHHHHHHHTBS---S-----CH-----H------HHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHH
T ss_pred -----HHHHHHHHHHHhc---c-----Cc-----H------HHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHH
Confidence 3444444332210 0 01 1 33456677888999999888753 2 4699999
Q ss_pred HhhcccCCCCcccCcccchheec
Q 036271 278 LLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 278 lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
| + + + .+|+++|...+
T Consensus 221 l-~---~---~-~ls~~ei~~~~ 235 (404)
T 2xbk_A 221 L-N---D---G-ELTEDRVAHLA 235 (404)
T ss_dssp H-H---S---S-SCCHHHHHHHH
T ss_pred h-h---c---C-CCCHHHHHHHH
Confidence 8 3 1 3 68988887653
No 60
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.78 E-value=1.7e-18 Score=156.77 Aligned_cols=206 Identities=13% Similarity=0.097 Sum_probs=147.0
Q ss_pred CCCchHHHHHHHHhhCCceEEecCC--ccEEEecCHHHHHHHHHhCCcccccCCCCC----cccceeccC-cceeeCCCC
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKFGS--FPVVVAASAEMAKQFLQTHDHIFASRPQTA----AGKHTTYNY-LNLTWAPYG 120 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~lg~--~~~vvi~dp~~~keil~~~~~~f~~R~~~~----~~~~~~~~~-~~~~~~~~g 120 (301)
++.|+..+.++. +||||+++++++ .+.++++||+.++++|.+. .|++++... ..... .+. .+++++.+|
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~-~~~~~~~l~~~dg 101 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITNDP--RFGRAEVTQRQITRLAPH-FKPRPGSLAFADQ 101 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTCT--TEESGGGGGSCBCBSSSC-CCCCTTCSTTCCT
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcCC--CcccCCCCCCCccccccc-hhccccccccCCc
Confidence 456778898887 899999999865 8899999999999999763 576664321 11111 111 234556789
Q ss_pred hhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHH-HHHHHHHHHHHhCccccCCCccchhh
Q 036271 121 PYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLS-RVTLSIISRTVLGKKYFSESKAEDSI 199 (301)
Q Consensus 121 ~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~-~~t~~ii~~~~fG~~~~~~~~~~~~~ 199 (301)
+.|+++||++. ++|++++++.+.+.+.++++++++.|.+. |+++|+...+. .++++||+. +||.+.+ + .
T Consensus 102 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~dl~~~~~~~~~~~vi~~-l~G~~~~--~--~--- 171 (411)
T 2dkk_A 102 PDHNRLRRAVA-GAFTVGATKRLRPRAQEILDGLVDGILAE-GPPADLVERVLEPFPIAVVSE-VMGVPAA--D--R--- 171 (411)
T ss_dssp THHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHH-CSCEEHHHHTTTHHHHHHHHH-HHTCCSS--H--H---
T ss_pred hHHHHHHHHhh-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHH-HhCCCHH--H--H---
Confidence 99999999995 89999999999999999999999999864 56899987775 699999999 5998663 1 1
Q ss_pred hhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHh
Q 036271 200 VTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLL 279 (301)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL 279 (301)
+.+.+....+ . ...+ .. ++..+..+.+.+++.++|+++++. . .+|+++.|+
T Consensus 172 ---~~~~~~~~~~----~-----~~~~--------~~-~~~~~~~~~l~~~~~~~i~~r~~~----~----~~dll~~ll 222 (411)
T 2dkk_A 172 ---ERVHSWTRQI----I-----STSG--------GA-EAAERAKRGLYGWITETVRARAGS----E----GGDVYSMLG 222 (411)
T ss_dssp ---HHHHHHHGGG----C-----SSCS--------CS-HHHHHHHHHHHHHHHHHHHTTTTC----C----SSCHHHHHH
T ss_pred ---HHHHHHHHHH----H-----hccc--------hH-HHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHH
Confidence 3333322211 0 0111 11 234556777888888888776542 2 569999999
Q ss_pred hcccCCCCcccCcccchheec
Q 036271 280 QMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 280 ~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+. + ++..+|+++|.+.+
T Consensus 223 ~~--~--~~~~ls~~el~~~~ 239 (411)
T 2dkk_A 223 AA--V--GRGEVGETEAVGLA 239 (411)
T ss_dssp HH--H--HTTSSCTTSHHHHH
T ss_pred Hh--c--CCCCCCHHHHHHHH
Confidence 84 2 23469999987654
No 61
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.78 E-value=1.3e-18 Score=159.06 Aligned_cols=210 Identities=10% Similarity=0.092 Sum_probs=139.2
Q ss_pred CCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccceeccCcceeeCCCChhhHHHHH
Q 036271 49 PLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRK 128 (301)
Q Consensus 49 ~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk 128 (301)
.+|+..+.++ ++||||+++..++ +++|+||+.++++|.++.. |++++......... + .+.+++.+|+.|+++||
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~~-f~~~~~~~~~~~~~-~-~~~l~~~dg~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPDI-FTTKSLVERAEPVM-R-GPVLAQMHGKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTTT-EECCCTTSCCCCSC-C--------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCccc-cccccccccccccc-C-CCccccCCcHHHHHHHH
Confidence 3577778766 6899999988766 8999999999999987654 88876543322221 2 23456778999999999
Q ss_pred HHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceeh-HHHHHHHHHHHHHHHHhCccccCCCccchhhhhHHHHHH
Q 036271 129 LYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVL-KEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQE 207 (301)
Q Consensus 129 ~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~-~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~ 207 (301)
++. ++|++++++.+.+.++++++++++.|.+ ++++|+ .+....+++++|+. +||.+.+ + . +.+.+
T Consensus 127 ~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~dl~~~~~~~~~~~vi~~-l~G~~~~-----~-~----~~~~~ 192 (441)
T 3nc3_A 127 IVV-RSFIGDALDHLSPLIKQNAENLLAPYLE--RGKSDLVNDFGKTFAVCVTMD-MLGLDKR-----D-H----EKISE 192 (441)
T ss_dssp HHH-HHHHHTHHHHHHHHHHHHHHHHHTTTTT--TTEEECCCCCHHHHHHHHHHH-HTTCCGG-----G-H----HHHHH
T ss_pred HHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHH-HcCCCHH-----H-H----HHHHH
Confidence 995 8999999999999999999999999875 567886 55556799999999 5897652 1 1 44555
Q ss_pred HHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcccCCCC
Q 036271 208 MLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPNL 287 (301)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~~~ 287 (301)
....++....... .+ ....++..+..+.+.+++.++|+++++. . .+|+++.|++ ..+ +
T Consensus 193 ~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~l~~~~~~~i~~rr~~----~----~~Dll~~Ll~-~~~--~ 250 (441)
T 3nc3_A 193 WHSGVADFITSIS----QS-------PEARAHSLWCSEQLSQYLMPVIKERRVN----P----GSDLISILCT-SEY--E 250 (441)
T ss_dssp HHHHHHHHHHCSC----CC-------HHHHHHHHHHHHHHHHHHHHHHHHHTTS----C----CSSHHHHHCC-------
T ss_pred HHHHHHHhccccc----CC-------hHHHHHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHHH-hhc--c
Confidence 5555444322111 11 0112345566778888999999887642 2 5699999998 333 2
Q ss_pred cccCcccchheec
Q 036271 288 DVKLNYDSVRGFT 300 (301)
Q Consensus 288 ~~~lt~~~i~~~~ 300 (301)
+..+|+++|.+.+
T Consensus 251 ~~~ls~~el~~~~ 263 (441)
T 3nc3_A 251 GMALSDKDILALI 263 (441)
T ss_dssp --CCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 3469999987654
No 62
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.78 E-value=5.6e-19 Score=163.45 Aligned_cols=162 Identities=11% Similarity=0.108 Sum_probs=122.4
Q ss_pred cCCCCCCCCCCccccccccC-----CCCchHHHHHHHHhhCC-ceEEecCCccE-------EEecCHHHHHHHHHhC---
Q 036271 28 ALKFPAGPKPWPIIGNLNLI-----GPLPHQSLHKLSQKYGQ-IMQLKFGSFPV-------VVAASAEMAKQFLQTH--- 91 (301)
Q Consensus 28 ~~~~ppgP~~~PllGnl~~~-----~~~~~~~~~~~~~~yG~-i~~~~lg~~~~-------vvi~dp~~~keil~~~--- 91 (301)
..+.||||+|+|+|||+.++ .+.++.++.++.++||+ ||++++|+.++ |+++|++..+.++.+.
T Consensus 26 p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v~ 105 (495)
T 3dsk_A 26 PIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVE 105 (495)
T ss_dssp CBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTEE
T ss_pred CCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeeccccccc
Confidence 34679999999999998765 46789999999999999 99999999888 5666666555444321
Q ss_pred -CcccccCCCCCcccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc--CCceeh
Q 036271 92 -DHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS--GKPVVL 168 (301)
Q Consensus 92 -~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~--g~~vd~ 168 (301)
.+.+..+..... ..++......++..+|+.|+++|+++. ++|++.. +.+.+.++++++++++.|.+.. +.++|+
T Consensus 106 k~~~~~~~~~~~~-~l~g~~~~~~~~~~~g~~h~~~R~~~~-~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~~~vdl 182 (495)
T 3dsk_A 106 KKDLLTGTYMPST-ELTGGYRILSYLDPSEPKHEKLKNLLF-FLLKSSR-NRIFPEFQATYSELFDSLEKELSLKGKADF 182 (495)
T ss_dssp CSSCTTSSSCCCG-GGGTTCCCGGGCCTTSHHHHHHHHHHH-HHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHHSSEES
T ss_pred ccccccccCCCCc-cccCCCcceeeeCCCchHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCccH
Confidence 122222221111 222211123455668999999999996 7888754 8899999999999999997642 578999
Q ss_pred HHHHHHHHHHHHHHHHhCccccCC
Q 036271 169 KEHLSRVTLSIISRTVLGKKYFSE 192 (301)
Q Consensus 169 ~~~~~~~t~~ii~~~~fG~~~~~~ 192 (301)
.+.+.+++++++++++||.+....
T Consensus 183 ~~~~~~~~~~~i~~~~~G~~~~~~ 206 (495)
T 3dsk_A 183 GGSSDGTAFNFLARAFYGTNPADT 206 (495)
T ss_dssp HHHHHHHHHHHHHHHHHSCCGGGS
T ss_pred HHHHHHHHHHHHHHHHcCCCcchh
Confidence 999999999999999999887644
No 63
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.78 E-value=3.4e-18 Score=154.00 Aligned_cols=205 Identities=10% Similarity=0.030 Sum_probs=147.2
Q ss_pred CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccceeccCcceeeCCCChhhHHHH
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGR 127 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 127 (301)
..+|+..+.+|.++ |||++++.|+ +.++|+||+.+++++.+. +.|++|+...... .......++++.+|+.|+++|
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~-~~~~~~~~~~~~~g~~h~~~R 98 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCLAVTPG-LGKVMQFIPLQQDGAEHKAFR 98 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTCCSSTT-HHHHHCCTTTTCCHHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcccCCCc-cccccccCccccCCcHHHHHH
Confidence 45789999999998 9999999884 589999999999999654 5788887322211 111112355677899999999
Q ss_pred HHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccCCCccchhhhhHHHHH
Q 036271 128 KLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQ 206 (301)
Q Consensus 128 k~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~ 206 (301)
|++. ++|++++++.+.+.+.++++++++.|.+ +.++|+...+ ..++.++++. +||.+.+ + . ..+.
T Consensus 99 ~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~v~~~-~~G~~~~-----~-~----~~~~ 164 (396)
T 3oft_A 99 TPVM-KGLASRFVVALEPKVQAVARKLMESLRP--RGSCDFVSDFAEILPLNIFLT-LIDVPLE-----D-R----PRLR 164 (396)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHGG--GSEEEHHHHTTTTHHHHHHHH-HTTCCGG-----G-H----HHHH
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHHHHH-HcCCCHH-----H-H----HHHH
Confidence 9995 8999999999999999999999999976 3578876655 5577777766 6886542 1 1 3444
Q ss_pred HHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcccCCC
Q 036271 207 EMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPN 286 (301)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~~ 286 (301)
+.+..++. . .. . ++..+..+.+.+++.++|+++++. . .+|+++.|++. .++
T Consensus 165 ~~~~~~~~---~------~~------~----~~~~~~~~~~~~~~~~~i~~r~~~----~----~~d~l~~ll~~-~~~- 215 (396)
T 3oft_A 165 QLGVQLTR---P------DG------S----MTVEQLKQAADDYLWPFIEKRMAQ----P----GDDLFSRILSE-PVG- 215 (396)
T ss_dssp HHHHHHHS---C------CS------S----CCHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHTS-CBT-
T ss_pred HHHHHHhC---C------CC------H----HHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHHHh-hcc-
Confidence 44443321 0 00 0 123456677788999999888764 2 67999999983 332
Q ss_pred CcccCcccchheec
Q 036271 287 LDVKLNYDSVRGFT 300 (301)
Q Consensus 287 ~~~~lt~~~i~~~~ 300 (301)
+..+|++++.+.+
T Consensus 216 -~~~l~~~el~~~~ 228 (396)
T 3oft_A 216 -GRPWTVDEARRMC 228 (396)
T ss_dssp -TBCCCHHHHHHHH
T ss_pred -CCCCCHHHHHHHH
Confidence 4469999987653
No 64
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.77 E-value=4e-18 Score=153.70 Aligned_cols=200 Identities=14% Similarity=0.177 Sum_probs=138.5
Q ss_pred HHHHHHhhCCceEEecC-Cc---cEEEecCHHHHHHHHHhCCcccccCCC------CCccccee-ccCcceeeCCCChhh
Q 036271 55 LHKLSQKYGQIMQLKFG-SF---PVVVAASAEMAKQFLQTHDHIFASRPQ------TAAGKHTT-YNYLNLTWAPYGPYW 123 (301)
Q Consensus 55 ~~~~~~~yG~i~~~~lg-~~---~~vvi~dp~~~keil~~~~~~f~~R~~------~~~~~~~~-~~~~~~~~~~~g~~W 123 (301)
+.+|+++ |||++++++ +. ++|+|+||+.++++|+++. .|++|+. ........ .....++++.+|+.|
T Consensus 19 ~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 96 (398)
T 1lfk_A 19 ADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDHQ-QFSTRRRWDPRDEIGGKGIFRPRELVGNLMDYDPPEH 96 (398)
T ss_dssp CHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCTT-TEEECTTCCC-------------CCTTCGGGCCTTHH
T ss_pred hHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhCc-ccccccccccccccCCcccccccccccCccccCCHHH
Confidence 4457776 999999975 45 8999999999999994333 5777764 11111010 011223455679999
Q ss_pred HHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHH-HHHHHHHHHHhCccccCCCccchhhhhH
Q 036271 124 RQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSR-VTLSIISRTVLGKKYFSESKAEDSIVTL 202 (301)
Q Consensus 124 k~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~-~t~~ii~~~~fG~~~~~~~~~~~~~~~~ 202 (301)
+++||++. +.|++++++.+.+.++++++++++.|.+. |+++|+.+.+.. ++.++++. +||.+++ + .
T Consensus 97 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~--~------ 163 (398)
T 1lfk_A 97 TRLRRKLT-PGFTLRKMQRMAPYIEQIVNDRLDEMERA-GSPADLIAFVADKVPGAVLCE-LVGVPRD--D--R------ 163 (398)
T ss_dssp HHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH-CSSEEHHHHTTTTHHHHHHHH-HHTCCGG--G--H------
T ss_pred HHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHH-HcCCCHH--H--H------
Confidence 99999995 89999999999999999999999999753 678999999987 89999998 5998763 1 1
Q ss_pred HHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcc
Q 036271 203 EEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMA 282 (301)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~ 282 (301)
+.+.+.+..++. . + +..++..+..+.+.+++.++|+++++. . .+|+++.|++..
T Consensus 164 ~~~~~~~~~~~~---------~-~--------~~~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~dll~~ll~~~ 217 (398)
T 1lfk_A 164 DMFMKLCHGHLD---------A-S--------LSQKRRAALGDKFSRYLLAMIARERKE----P----GEGMIGAVVAEY 217 (398)
T ss_dssp HHHHHHHHHTTC---------T-T--------SCHHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------c-c--------cchHHHHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHHHhc
Confidence 334443332110 0 0 112345567778888999999888763 2 569999999842
Q ss_pred cCCCCcccCcccchheec
Q 036271 283 DDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 283 ~d~~~~~~lt~~~i~~~~ 300 (301)
+..+|+++|.+.+
T Consensus 218 -----~~~l~~~el~~~~ 230 (398)
T 1lfk_A 218 -----GDDATDEELRGFC 230 (398)
T ss_dssp -----GGGSCHHHHHHHH
T ss_pred -----CCCCCHHHHHHHH
Confidence 1258988887643
No 65
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.76 E-value=3.3e-18 Score=155.11 Aligned_cols=206 Identities=14% Similarity=0.080 Sum_probs=146.9
Q ss_pred CCchHHHHHHHHhhCCceEEe-cCC-ccEEEecCHHHHHHHHHhCCcccccCCCCCccccee--ccC-cceeeCCCChhh
Q 036271 49 PLPHQSLHKLSQKYGQIMQLK-FGS-FPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTT--YNY-LNLTWAPYGPYW 123 (301)
Q Consensus 49 ~~~~~~~~~~~~~yG~i~~~~-lg~-~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~--~~~-~~~~~~~~g~~W 123 (301)
.+|+..+.++.+ ||||+++. .|+ .++++|+||+.|+++|.+ .+.|++|+......... ... .+++++.+|+.|
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~-~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 114 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAP-SAPLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQH 114 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCT-TSSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhC-hhhhcCCccccccccccccccccCCCccccCcHHH
Confidence 468889998876 99999997 554 799999999999999944 44688886533221110 011 334667789999
Q ss_pred HHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccCCCccchhhhhH
Q 036271 124 RQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFSESKAEDSIVTL 202 (301)
Q Consensus 124 k~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~ 202 (301)
+++||++. ++|++++++.+.+.++++++++++.|.+ +.++|+...+ ..++++||++ +||.+.+ + .
T Consensus 115 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~dl~~~~~~~~~~~vi~~-l~G~~~~-----~-~---- 180 (415)
T 3mgx_A 115 RKLRKLVG-PLLSRAAARKLAERVRIEVGDVLGRVLD--GEVCDAATAIGPRIPAAVVCE-ILGVPAE-----D-E---- 180 (415)
T ss_dssp HHHHHHHG-GGSSHHHHHHSHHHHHHHHHHHTTTSSS--SSCEESTTTTTTHHHHHHHHH-HHTCCGG-----G-H----
T ss_pred HHHHHHhH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHH-HcCCCHH-----H-H----
Confidence 99999985 8999999999999999999999998875 3579998877 6799999998 5896442 1 1
Q ss_pred HHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcc
Q 036271 203 EEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMA 282 (301)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~ 282 (301)
+.+.+....++... ...+.| . . ..+..+.+.+++.++|++++++ . .+|+++.|++.
T Consensus 181 ~~~~~~~~~~~~~~----~~~~~~------~-~----~~~~~~~l~~~~~~~i~~rr~~----~----~~dll~~ll~~- 236 (415)
T 3mgx_A 181 DMLIDLTNHAFGGE----DELFDG------M-T----PRQAHTEILVYFDELITARRKE----P----GDDLVSTLVTD- 236 (415)
T ss_dssp HHHHHHHHHHTSCC----C----C------C-C----HHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHHC-
T ss_pred HHHHHHHHHHHccc----Ccccch------H-H----HHHHHHHHHHHHHHHHHHHHhC----C----CCCHHHHHHhC-
Confidence 44555554433211 111111 1 1 1245677788999999888763 2 56999999983
Q ss_pred cCCCCcccCcccchheec
Q 036271 283 DDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 283 ~d~~~~~~lt~~~i~~~~ 300 (301)
. .+|+++|.+.+
T Consensus 237 ~------~ls~~el~~~~ 248 (415)
T 3mgx_A 237 D------DLTIDDVLLNC 248 (415)
T ss_dssp T------TSCHHHHHHHH
T ss_pred C------CCCHHHHHHHH
Confidence 2 48888887653
No 66
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.75 E-value=5.7e-18 Score=152.59 Aligned_cols=208 Identities=12% Similarity=0.053 Sum_probs=145.7
Q ss_pred CCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCc------ccceeccCcceeeCCCChh
Q 036271 49 PLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAA------GKHTTYNYLNLTWAPYGPY 122 (301)
Q Consensus 49 ~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~------~~~~~~~~~~~~~~~~g~~ 122 (301)
.+|+..+.++ ++||||++ + | .++++|+||+.++++|.+ ..|++++.... ..........++++.+|+.
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~-g-~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 86 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G-A-HRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQDEPD 86 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C-G-GGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGGGCCTTH
T ss_pred cCchHHHHHH-HhcCCeee-C-C-CCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccccCCchh
Confidence 3577888766 68999999 7 4 789999999999999976 35776542110 0011110012345667999
Q ss_pred hHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHH-HHHHHHHHHHHHHHhCccccCCCccchhhhh
Q 036271 123 WRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKE-HLSRVTLSIISRTVLGKKYFSESKAEDSIVT 201 (301)
Q Consensus 123 Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~-~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 201 (301)
|+++||++. ++|++++++.+.+.+.++++++++.|.+ ++++|+.. ....+++++|+.+ ||.+.+ + .
T Consensus 87 h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~dl~~~~~~~~~~~vi~~~-~G~~~~--~--~----- 153 (397)
T 3buj_A 87 HGRLRGVVG-PAFSPSALRRLEPVIAGTVDDLLRPALA--RGAMDVVDELAYPLALRAVLGL-LGLPAA--D--W----- 153 (397)
T ss_dssp HHHHHHHHG-GGSSTTTTGGGHHHHHHHHHHHHHHHHT--TTEEEHHHHTHHHHHHHHHHHH-HTCCGG--G--H-----
T ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHhh--cCCeehHHHHHHHhHHHHHHHH-hCCCHH--H--H-----
Confidence 999999995 8999999999999999999999999986 45899865 4578999999999 998763 1 1
Q ss_pred HHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhc
Q 036271 202 LEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQM 281 (301)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~ 281 (301)
+.+......+...... + ++. ...++..+..+.+.+++.++|+++++. . .+|+++.|++.
T Consensus 154 -~~~~~~~~~~~~~~~~-------~----~~~-~~~~~~~~~~~~~~~~~~~~i~~r~~~----~----~~dll~~ll~~ 212 (397)
T 3buj_A 154 -GAVGRWSRDVGRTLDR-------G----ASA-EDMRRGHAAIAEFADYVERALARRRRE----G----GEDLLALMLDA 212 (397)
T ss_dssp -HHHHHHHHHHHGGGCS-------S----CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----C----CCSHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcCC-------C----CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcC----C----CCCHHHHHHHh
Confidence 3454444443332110 0 111 122345566778889999999888764 2 56999999984
Q ss_pred ccCCCCcccCcccchheec
Q 036271 282 ADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 282 ~~d~~~~~~lt~~~i~~~~ 300 (301)
.++ +. +|+++|.+.+
T Consensus 213 -~~~--~~-ls~~ei~~~~ 227 (397)
T 3buj_A 213 -HDR--GL-MSRNEIVSTV 227 (397)
T ss_dssp -HHT--TS-SCHHHHHHHH
T ss_pred -hhc--CC-CCHHHHHHHH
Confidence 321 33 9999987654
No 67
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.73 E-value=2.7e-17 Score=151.17 Aligned_cols=160 Identities=13% Similarity=0.105 Sum_probs=116.3
Q ss_pred CCCCCCCCCCccccccccC-----CC-CchHHHHHHHHhhCC-ceEEecCCccEEE-------ecCHHHHHHHHH----h
Q 036271 29 LKFPAGPKPWPIIGNLNLI-----GP-LPHQSLHKLSQKYGQ-IMQLKFGSFPVVV-------AASAEMAKQFLQ----T 90 (301)
Q Consensus 29 ~~~ppgP~~~PllGnl~~~-----~~-~~~~~~~~~~~~yG~-i~~~~lg~~~~vv-------i~dp~~~keil~----~ 90 (301)
.+.+|||+|+|++||+.++ .+ .|+.++.++.++||+ ||++++|+.++|+ ++|....+.++. +
T Consensus 8 l~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~ 87 (473)
T 3dan_A 8 LREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKVE 87 (473)
T ss_dssp BCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTEE
T ss_pred CCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCccee
Confidence 4568999999999998764 45 688899999999999 9999997554433 344333323332 1
Q ss_pred CCcccccCCCCCcccceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhc--CCceeh
Q 036271 91 HDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALS--GKPVVL 168 (301)
Q Consensus 91 ~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~--g~~vd~ 168 (301)
+...+..+... ............++..+|+.|+++|+++. +.|+++ ++.+.+.++++++++++.|.+.. +.++|+
T Consensus 88 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~h~~~R~~~~-~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~vdl 164 (473)
T 3dan_A 88 KKDLFTGTYMP-STKLTGGYRVLSYLDPSEPRHAQLKNLLF-FMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGKAAF 164 (473)
T ss_dssp CSSCTTSSSCC-CGGGGTTSCCGGGCCTTSHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCEEC
T ss_pred ccccccccccC-CccccCCCcceeeeCCCcHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCcccH
Confidence 22222222211 11112111123456678999999999995 889884 89999999999999999997633 568999
Q ss_pred HHHHHHHHHHHHHHHHhCccccC
Q 036271 169 KEHLSRVTLSIISRTVLGKKYFS 191 (301)
Q Consensus 169 ~~~~~~~t~~ii~~~~fG~~~~~ 191 (301)
.+.+.+++++++++++||.+...
T Consensus 165 ~~~~~~~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 165 NDVGEQAAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp HHHHHHHHHHHHHHHHHSCCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999998865
No 68
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.73 E-value=1.3e-16 Score=145.01 Aligned_cols=213 Identities=11% Similarity=0.062 Sum_probs=145.3
Q ss_pred CCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCCC---CCccc-----ceeccCcceeeCC
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRPQ---TAAGK-----HTTYNYLNLTWAP 118 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~~---~~~~~-----~~~~~~~~~~~~~ 118 (301)
..+|+..+.+|.++ |||+++.. ++.++++|++++.|++++.+. ..|++++. ..... .......+.++..
T Consensus 37 ~~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (426)
T 3rwl_A 37 NDSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAM 114 (426)
T ss_dssp TTCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGC
T ss_pred cCCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCccccc
Confidence 34588889988876 99999987 567899999999999999775 35766542 11111 0011112345677
Q ss_pred CChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccCCCccch
Q 036271 119 YGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFSESKAED 197 (301)
Q Consensus 119 ~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~ 197 (301)
+|+.|+++||++. +.|++++++.+.+.+.++++++++.|.+ ++++|+...+ ..++.++++. +||.+.+ +
T Consensus 115 dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~dl~~~~~~~~~~~vi~~-l~G~~~~--~---- 184 (426)
T 3rwl_A 115 DRPRHDEQRKAVS-PIVAPANLAALEGTIRERVSKTLDGLPV--GEEFDWVDRVSIEITTQMLAT-LFDFPFE--E---- 184 (426)
T ss_dssp CTTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHTSCS--SSCEEHHHHTHHHHHHHHHHH-HHTCCGG--G----
T ss_pred CchHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhc--CCCcchHHHHHHHHHHHHHHH-HcCCCHH--H----
Confidence 8999999999985 8999999999999999999999999854 6789976666 6788888886 8997542 1
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHH
Q 036271 198 SIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDL 277 (301)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~ 277 (301)
. +.+.+..+.+. . ++.... . ...++..+..+.+.+++.++|++++.. +. .+|+++.
T Consensus 185 ~----~~~~~~~~~~~----~------~~~~~~--~-~~~~~~~~~~~~~~~~~~~~i~~r~~~---~~----~~dll~~ 240 (426)
T 3rwl_A 185 R----RKLTRWSDVTT----A------APGGGV--V-ESWDQRKTELLECAAYFQVLWNERVNK---DP----GNDLISM 240 (426)
T ss_dssp T----HHHHHHHHHHT----C------CTTSSS--C-SSHHHHHHHHHHHHHHHHHHHHHHHTS---CC----CSSHHHH
T ss_pred H----HHHHHHHHHHH----h------ccCccc--c-ccHHHHHHHHHHHHHHHHHHHHHHhhc---CC----CCCHHHH
Confidence 1 33433322211 1 010011 1 112344556778888999999887432 12 6799999
Q ss_pred HhhcccCCCCcccCcccchheec
Q 036271 278 LLQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 278 lL~~~~d~~~~~~lt~~~i~~~~ 300 (301)
|++. .+ +..+|+++|.+.+
T Consensus 241 ll~~-~~---~~~ls~~el~~~~ 259 (426)
T 3rwl_A 241 LAHS-PA---TRNMTPEEYLGNV 259 (426)
T ss_dssp HHHC-GG---GGGCCHHHHHHHH
T ss_pred HHhc-cc---CCCCCHHHHHHHH
Confidence 9983 32 1248999887654
No 69
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.71 E-value=3.4e-17 Score=147.51 Aligned_cols=204 Identities=12% Similarity=0.115 Sum_probs=140.9
Q ss_pred CCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccc-c-CCCC--Cccc--ceec-cCcceeeCCC
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFA-S-RPQT--AAGK--HTTY-NYLNLTWAPY 119 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~-~-R~~~--~~~~--~~~~-~~~~~~~~~~ 119 (301)
..+|+..+.+| ++||||+++++ |+.++|+++||+.++++|.++ .|+ + ++.. +... .+.. .+.+++++
T Consensus 15 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 89 (396)
T 1n40_A 15 GDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI-- 89 (396)
T ss_dssp SSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH--
T ss_pred ccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH--
Confidence 45688999999 99999999998 899999999999999999875 376 5 5432 1110 1111 11233332
Q ss_pred ChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccCCCccchh
Q 036271 120 GPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFSESKAEDS 198 (301)
Q Consensus 120 g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~ 198 (301)
.|+++||++. +.|+++ ++.+.+.+.++++++++.|.+. ++++|+...+ ..+++++|+. +||.+.+ + .
T Consensus 90 --~h~~~R~~~~-~~fs~~-~~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~--~-- 157 (396)
T 1n40_A 90 --ADAGLRKAVM-KAITPK-APGLEQFLRDTANSLLDNLITE-GAPADLRNDFADPLATALHCK-VLGIPQE--D--G-- 157 (396)
T ss_dssp --HHTTCHHHHH-HHTSSC-STTHHHHHHHHHHHHHHHHHHH-CSCEETTTTTHHHHHHHHHHH-HHTCCGG--G--H--
T ss_pred --HHHHHHHHHH-HhhChH-HHHhHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHhHHHHHHH-HhCCChh--h--H--
Confidence 9999999995 789998 9999999999999999999864 5789998655 5899999999 8998763 1 1
Q ss_pred hhhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHH
Q 036271 199 IVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLL 278 (301)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~l 278 (301)
+++.+.+..++... . ..| .++..+..+.+ +++.++|+ + .+ + ++|+++.|
T Consensus 158 ----~~~~~~~~~~~~~~---~---------~~p----~~~~~~~~~~~-~~~~~~i~----~---~~-~--~~dll~~l 206 (396)
T 1n40_A 158 ----PKLFRSLSIAFMSS---A---------DPI----PAAKINWDRDI-EYMAGILE----N---PN-I--TTGLMGEL 206 (396)
T ss_dssp ----HHHHHTHHHHTBCC---S---------SCC----HHHHHHHHHHH-HHHHHHHH----C---TT-C--CSHHHHHH
T ss_pred ----HHHHHHHHHHhccc---c---------CCC----HHHHHHHHHHH-HHHHHHHh----C---CC-C--CCCHHHHH
Confidence 34544444332210 0 011 12344555566 77777775 1 11 1 57999999
Q ss_pred hhcccCCCCcccCcccchheec
Q 036271 279 LQMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 279 L~~~~d~~~~~~lt~~~i~~~~ 300 (301)
++...++ ++..+|+++|.+.+
T Consensus 207 l~~~~~~-~~~~l~~~~i~~~~ 227 (396)
T 1n40_A 207 SRLRKDP-AYSHVSDELFATIG 227 (396)
T ss_dssp HHHHTSG-GGTTSCHHHHHHHH
T ss_pred HHhhccc-ccCCCCHHHHHHHH
Confidence 9842121 23469999987654
No 70
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.69 E-value=1.2e-17 Score=151.35 Aligned_cols=211 Identities=11% Similarity=0.060 Sum_probs=143.9
Q ss_pred CCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCC----cccceeccCcceeeCCCChhh
Q 036271 48 GPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTA----AGKHTTYNYLNLTWAPYGPYW 123 (301)
Q Consensus 48 ~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~----~~~~~~~~~~~~~~~~~g~~W 123 (301)
..+|+.. ++.++||||+.+++|+.. ++|++++.|+++|.++.-.+..++... ..........+++++.+|+.|
T Consensus 32 ~~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 108 (416)
T 3p3o_A 32 PNFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGADH 108 (416)
T ss_dssp TTCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHHHSGGGCCHHHH
T ss_pred ccCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhcCccccCCchHH
Confidence 3457776 566789999999998877 999999999999987642222221000 000111111245667789999
Q ss_pred HHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehH-HHHHHHHHHHHHHHHhCccccCCCccchhhhhH
Q 036271 124 RQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLK-EHLSRVTLSIISRTVLGKKYFSESKAEDSIVTL 202 (301)
Q Consensus 124 k~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~-~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~ 202 (301)
+++||+++ ++|++++++.+.+.++++++++++.+ + +.++|+. +....++++||+. +||.+.+ + .
T Consensus 109 ~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l-~--~g~~d~~~~~~~~~~~~vi~~-l~G~~~~-----~-~---- 173 (416)
T 3p3o_A 109 RRLRGLAT-HPFTPRRITAVQPFVRSTVEQLIDKL-P--QGDFDFVQHFPHPLPALVMCQ-LLGFPLE-----D-Y---- 173 (416)
T ss_dssp HHHHHTTC-GGGSHHHHHHHHHHHHHHHHHHHHTC-C--SSSEEHHHHTTTHHHHHHHHH-HHTCCGG-----G-H----
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhh-c--cCCccHHHHHHHHHHHHHHHH-HhCCCHH-----H-H----
Confidence 99999995 99999999999999999999999999 4 3469955 4556799999999 5897542 1 1
Q ss_pred HHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcc
Q 036271 203 EEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMA 282 (301)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~ 282 (301)
+.+.+....++.. +... ......++..+..+.+.+++.++|++++++ . .+|+++.|++.
T Consensus 174 ~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~l~~~~~~~i~~rr~~----~----~~dll~~ll~~- 232 (416)
T 3p3o_A 174 DTVGRLSIETNLG---------LALS---NDQDILVKVEQGLGRMFDYLVAAIEKRKVE----P----GDDLTSDIVRA- 232 (416)
T ss_dssp HHHHHHHHTTCGG---------GTTC---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHHH-
T ss_pred HHHHHHHHHHHhh---------cccc---cchhhHHHHHHHHHHHHHHHHHHHHHHHhC----C----CccHHHHHHHh-
Confidence 3343333322111 1110 011223456677888899999999988764 2 67999999984
Q ss_pred cCCCCcccCcccchheec
Q 036271 283 DDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 283 ~d~~~~~~lt~~~i~~~~ 300 (301)
.++ + .+|+++|.+.+
T Consensus 233 ~~~--~-~ls~~el~~~~ 247 (416)
T 3p3o_A 233 FHD--G-VLDDYELRTLV 247 (416)
T ss_dssp HHT--T-SSCHHHHHHHH
T ss_pred hcc--C-CCCHHHHHHHH
Confidence 322 2 69999987654
No 71
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.67 E-value=9.8e-16 Score=137.88 Aligned_cols=207 Identities=15% Similarity=0.134 Sum_probs=143.9
Q ss_pred CchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccceeccCcceeeCCCChhhHHHHHH
Q 036271 50 LPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKL 129 (301)
Q Consensus 50 ~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~ 129 (301)
+|+..+.++.+ +|||+++..| .+++++++.+++++.+. .|++++........ ....+++++.+|+.|+++||+
T Consensus 21 dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~-~~~~~~l~~~dg~~h~~~R~~ 93 (394)
T 2wiy_A 21 NPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPW-AVASDTALGSDPPHHTVLRRQ 93 (394)
T ss_dssp CCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGG-GGGGGSGGGCCTTHHHHHHHH
T ss_pred CccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccc-hhcccccccCCchHHHHHHHH
Confidence 57888887755 5899987765 68999999999999653 46654321111111 111234567789999999999
Q ss_pred HHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHHHHHHHHHHHHHHhCccccCCCccchhhhhHHHHHHHH
Q 036271 130 YLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHLSRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQEML 209 (301)
Q Consensus 130 l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 209 (301)
+. ++|++++++.+.+.+++.++++++.+.+ |+++|+...+..+++++++..+||.+.+ + . ..+.+.+
T Consensus 94 ~~-~~fs~~~~~~~~~~i~~~~~~l~~~~~~--~~~~d~~~~~~~~~~~vi~~~~~G~~~~--~----~----~~~~~~~ 160 (394)
T 2wiy_A 94 TN-KWFTPKLVDGWVRTTRELVGDLLDGVEA--GQVIEARRDLAVVPTHVTMARVLQLPED--D----A----DAVMEAM 160 (394)
T ss_dssp HH-TTCSHHHHHHHTHHHHHHHHHHHHTCCT--TCCEEHHHHHTHHHHHHHHHHHHTCCCC--C----H----HHHHHHH
T ss_pred HH-hccCHHHHHHHHHHHHHHHHHHHHHHhc--cCCeeHHHHHHhhhHHHHHHHHcCCCHh--H----H----HHHHHHH
Confidence 85 8999999999999999999999998864 6789999999999999999999998642 2 1 3444433
Q ss_pred HHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcccCCCCcc
Q 036271 210 DELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPNLDV 289 (301)
Q Consensus 210 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~~~~~ 289 (301)
.+.+.. ....|. ....++..+....+.+++.++|++++++ . .+|+++.|++...+ +
T Consensus 161 ~~~~~~------~~~~p~------~~~~~~~~~~~~~l~~~~~~~i~~rr~~----~----~~dll~~Ll~~~~~---~- 216 (394)
T 2wiy_A 161 FEAMLM------QSAEPA------DGDVDRAAVAFGYLSARVAEMLEDKRVN----P----GDGLADSLLDAARA---G- 216 (394)
T ss_dssp HHHHGG------GSSSCC------TTHHHHHHHHHHHHHHHHHHHHHHHHHS----C----CSSHHHHHHHHHHT---T-
T ss_pred HHHHHh------ccCCcc------chHHHHHHHHHHHHHHHHHHHHHHhhcC----C----CCcHHHHHHHhhhc---C-
Confidence 222211 001121 1112334456677788899999888653 2 46899999984322 2
Q ss_pred cCcccchheec
Q 036271 290 KLNYDSVRGFT 300 (301)
Q Consensus 290 ~lt~~~i~~~~ 300 (301)
.+|++++.+.+
T Consensus 217 ~ls~~el~~~~ 227 (394)
T 2wiy_A 217 EITESEAIATI 227 (394)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 48999987654
No 72
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.66 E-value=2.4e-16 Score=140.52 Aligned_cols=193 Identities=16% Similarity=0.088 Sum_probs=134.9
Q ss_pred chHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCC-C-cc-----c-ceeccC--cceeeCCCC
Q 036271 51 PHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQT-A-AG-----K-HTTYNY--LNLTWAPYG 120 (301)
Q Consensus 51 ~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~-~-~~-----~-~~~~~~--~~~~~~~~g 120 (301)
|+..+.++ ++||||++++ | +++++||+.++++|.++ +.|++++.. + .. . .+. +. ..+++..+|
T Consensus 1 p~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~dg 73 (367)
T 3b4x_A 1 MYDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFF-DIPTRYTMLTSDP 73 (367)
T ss_dssp CHHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCC-CCGGGSSGGGCCT
T ss_pred CCHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchh-hcccccccccCCc
Confidence 45677777 5799999988 5 89999999999999876 368877531 1 11 1 121 21 123445679
Q ss_pred hhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccCCCccchhh
Q 036271 121 PYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFSESKAEDSI 199 (301)
Q Consensus 121 ~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~ 199 (301)
+.|+++||++. +.|++++++. +.++++++++++.|. | ++|+...+ ..++++||++ +||.+ + + .
T Consensus 74 ~~h~~~R~~~~-~~fs~~~l~~--~~i~~~~~~l~~~l~---g-~~d~~~~~~~~~~~~vi~~-~~G~~-~--~--~--- 137 (367)
T 3b4x_A 74 PLHDELRNLTA-DAFNPSNLPV--DFVREVTVKLLSELD---E-EFDVIESFAIPLPILVISK-MLGIN-P--D--V--- 137 (367)
T ss_dssp THHHHHHHTTG-GGGSGGGSCH--HHHHHHHHHHHHTCC---S-EEEHHHHTTTHHHHHHHHH-HHTCC-C--C--H---
T ss_pred hhHHHHHHHHH-HhcCHhhhcc--hHHHHHHHHHHHhcc---C-CcchHHHHHHhhHHHHHHH-HcCCC-C--c--H---
Confidence 99999999995 8999998887 999999999999886 4 49998765 7999999999 79987 3 2 1
Q ss_pred hhHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHh
Q 036271 200 VTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLL 279 (301)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL 279 (301)
+.+.+.+..++.... ..|.. . +.. +..+.+.+++.++|++++++ . .+|+++.|+
T Consensus 138 ---~~~~~~~~~~~~~~~------~~p~~--~------~~~-~~~~~~~~~~~~~i~~r~~~----~----~~dll~~ll 191 (367)
T 3b4x_A 138 ---KKVKDWSDLVALRLG------RADEI--F------SIG-RKYLELISFSKKELDSRKGK----E----IVDLTGKIA 191 (367)
T ss_dssp ---HHHHHHHHHHHTTTT------STTGG--G------CCC-HHHHHHHHHHHHHHHHHTTT----C----CSSHHHHHH
T ss_pred ---HHHHHHHHHHHhccC------CChhh--H------HHH-HHHHHHHHHHHHHHHHHhcC----C----CCCHHHHHH
Confidence 445555554433211 12211 1 111 45566778888889877642 2 569999999
Q ss_pred hcccCCCCcccCcccchheec
Q 036271 280 QMADDPNLDVKLNYDSVRGFT 300 (301)
Q Consensus 280 ~~~~d~~~~~~lt~~~i~~~~ 300 (301)
+. .+|++++.+.+
T Consensus 192 ~~--------~ls~~el~~~~ 204 (367)
T 3b4x_A 192 NS--------NLSELEKEGYF 204 (367)
T ss_dssp TS--------SSCHHHHHHHH
T ss_pred hc--------cCCHHHHHHHH
Confidence 82 37788876543
No 73
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.63 E-value=6.4e-16 Score=137.81 Aligned_cols=192 Identities=15% Similarity=0.165 Sum_probs=130.9
Q ss_pred chHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCC--C---C-cc-cc--eeccCcceeeCCCCh
Q 036271 51 PHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQ--T---A-AG-KH--TTYNYLNLTWAPYGP 121 (301)
Q Consensus 51 ~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~--~---~-~~-~~--~~~~~~~~~~~~~g~ 121 (301)
|+..+.++ ++||||+++ | +.++++||+.++++|.+. +.|++|+. . . .. .. ......++++..+|+
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 74 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPP 74 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTT
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccccccCCCh
Confidence 45677777 589999987 5 589999999999999875 46888863 1 1 00 11 110011334566799
Q ss_pred hhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccCCCccchhhh
Q 036271 122 YWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFSESKAEDSIV 200 (301)
Q Consensus 122 ~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~ 200 (301)
.|+++||++. ++|++++++.+.+.++++++++++.| + +.++|+.+.+ ..+++++|+++ ||.+.+ + .
T Consensus 75 ~h~~~R~~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l-~--~g~~d~~~~~~~~~~~~vi~~~-~G~~~~--~--~---- 141 (368)
T 1io7_A 75 LHDELRSMSA-DIFSPQKLQTLETFIRETTRSLLDSI-D--PREDDIVKKLAVPLPIIVISKI-LGLPIE--D--K---- 141 (368)
T ss_dssp HHHHHHGGGT-TTTCHHHHHHHHHHHHHHHHHHHHTC-C--TTSEEHHHHTTTHHHHHHHHHH-HTCCGG--G--H----
T ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHh-h--cCCccHHHHHHHHHHHHHHHHH-hCCCHH--H--H----
Confidence 9999999995 89999999999999999999999999 5 3479999876 78999999999 998663 1 1
Q ss_pred hHHHHHHHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhh
Q 036271 201 TLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQ 280 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~ 280 (301)
+.+.+....++ ... . .| . . .++..+..+.+.+++.++| + . .+|+++.|++
T Consensus 142 --~~~~~~~~~~~---~~~--~--~p------~-~-~~~~~~~~~~~~~~~~~~i-------~--~----~~d~l~~ll~ 191 (368)
T 1io7_A 142 --EKFKEWSDLVA---FRL--G--KP------G-E-IFELGKKYLELIGYVKDHL-------N--S----GTEVVSRVVN 191 (368)
T ss_dssp --HHHHHHGGGCT---TSC--C--CT------T-C-HHHHHHHHHHHHHHHHHHT-------T--S----SCHHHHHHHT
T ss_pred --HHHHHHHHHHH---hcc--C--Ch------H-H-HHHHHHHHHHHHHHHHHHh-------C--C----CCCHHHHHHh
Confidence 33333222111 000 0 12 1 1 1334455566666666665 1 1 4699999997
Q ss_pred cccCCCCcccCcccchhee
Q 036271 281 MADDPNLDVKLNYDSVRGF 299 (301)
Q Consensus 281 ~~~d~~~~~~lt~~~i~~~ 299 (301)
. .+|++++.+.
T Consensus 192 ~--------~l~~~ei~~~ 202 (368)
T 1io7_A 192 S--------NLSDIEKLGY 202 (368)
T ss_dssp S--------SCCHHHHHHH
T ss_pred c--------cCCHHHHHHH
Confidence 2 3777777654
No 74
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.62 E-value=1.5e-15 Score=134.16 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=91.2
Q ss_pred HhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccceeccCcceeeCCCChhhHHHHHHHHHhhccHHH
Q 036271 60 QKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKR 139 (301)
Q Consensus 60 ~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~ 139 (301)
++||||+++ | +++++||+.++++|.++ +.|++|+...... .+ .++++..+|+.|+++||++. ++|++++
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~---~~-~~~l~~~~g~~~~~~R~~~~-~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMND-KIFSSNPGNRYSN---AG-GISFITMDNPEHKEFRDISA-PYFLPSK 70 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCT-TTEESSCSSCCC-------CCGGGGCCHHHHHHHHHHHH-HHHSHHH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhCh-hhcccCCcCCCCC---cc-ccccccCCchHHHHHHHHhh-hhcCHHH
Confidence 579999986 3 99999999999999876 3788886321111 12 23345568999999999995 8999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccc
Q 036271 140 LESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKY 189 (301)
Q Consensus 140 l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~ 189 (301)
++.|.+.++++++++++.|. ++|+...+ ..+++++|+++ ||.+.
T Consensus 71 l~~~~~~i~~~~~~l~~~l~-----~~d~~~~~~~~~~~~vi~~~-~G~~~ 115 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID-----NKDIISEYAVRLPVNIISKI-LGIPD 115 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT-----TSCHHHHTTTHHHHHHHHHH-HTCCG
T ss_pred HHHHHHHHHHHHHHHHHhcc-----ccCHHHHHhhhhhHHHHHHH-cCCCH
Confidence 99999999999999998885 68988765 89999999999 99866
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.42 E-value=1.8e-12 Score=117.24 Aligned_cols=145 Identities=15% Similarity=0.085 Sum_probs=104.1
Q ss_pred CCCCccccc-cc--cCCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCc---cccee
Q 036271 35 PKPWPIIGN-LN--LIGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAA---GKHTT 108 (301)
Q Consensus 35 P~~~PllGn-l~--~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~---~~~~~ 108 (301)
+.++|.+|- .. .+..+|+..+.++. ++|||+ |.++..+++|++++.|+++|.+.. .|+++..... .....
T Consensus 17 ~~~~P~~~~dp~~~~~~~dP~~~~~~lR-~~gPV~--~~~~~~~~~vt~~~~v~~vl~d~~-~fs~~~~~~~~~~~~~~~ 92 (412)
T 4dnj_A 17 GAGVPHLGIDPFALDYFADPYPEQETLR-EAGPVV--YLDKWNVYGVARYAEVYAVLNDPL-TFCSSRGVGLSDFKKEKP 92 (412)
T ss_dssp STTSCEECCCTTSHHHHHSCHHHHHHHH-HHCSSE--EETTTTEEEECSHHHHHHHHTCTT-TEESTTCSSSSCTTTSCC
T ss_pred CCCCCccCCCCCCHHHHhCcHHHHHHHH-hcCCEE--EECCCCEEEECCHHHHHHHHcCCc-cccCCCcccccccccccc
Confidence 446887772 21 22456888887775 579996 567778999999999999996543 4544322111 11111
Q ss_pred ccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceeh-HHHHHHHHHHHHHHHHh
Q 036271 109 YNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVL-KEHLSRVTLSIISRTVL 185 (301)
Q Consensus 109 ~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~-~~~~~~~t~~ii~~~~f 185 (301)
....+.++..+|+.|+++||+++ ++|++++++.+.+.+.+.++++++.+... ++++|+ .+....++.++++.+..
T Consensus 93 ~~~~~~~~~~Dg~~H~r~R~~~~-~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~-~~~~D~v~~~~~~~~~~~i~~l~g 168 (412)
T 4dnj_A 93 WRPPSLILEADPPAHTRTRAVLS-KVLSPATMKRLRDGFAAAADAKIDELLAR-GGNIDAIADLAEAYPLSVFPDAMG 168 (412)
T ss_dssp SSCCCTTTTCCTTHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEETCCCCCCHHHHHHHHHHHT
T ss_pred ccCCCccccCChHHHHHHHhhcc-cccCHHHHHHhhHHHHHHHHHHHHhhhcc-CCCceeHHHHHhhhhHhHHHHHcC
Confidence 12234566778999999999985 89999999999999999999999999764 456774 56667788888887643
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.39 E-value=1.7e-11 Score=110.95 Aligned_cols=211 Identities=10% Similarity=0.060 Sum_probs=134.0
Q ss_pred CCchHHHHHHHHhhCC-ceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcccceeccCcceeeCCCChhhHHHH
Q 036271 49 PLPHQSLHKLSQKYGQ-IMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAGKHTTYNYLNLTWAPYGPYWRQGR 127 (301)
Q Consensus 49 ~~~~~~~~~~~~~yG~-i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 127 (301)
.+|+..+.++.++.++ ++..-.|+ ...+|++++.|+++|.+. ..|+++........ ...........+|+.|+++|
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d~-~~fs~~~~~~~~~~-~~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSDP-TRFSSEVIFLPKEA-GEKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTCT-TTEESSCCSSSTTS-SCSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcCc-hhccCCCccccccc-ccccccCcccCCcHHHHHHH
Confidence 4577777777655443 43333333 578899999999999653 35776543221111 11222344556799999999
Q ss_pred HHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHHHHHHHHHhCccccCCCccchhhhhHHHHH
Q 036271 128 KLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTLSIISRTVLGKKYFSESKAEDSIVTLEEFQ 206 (301)
Q Consensus 128 k~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~ 206 (301)
|+++ ++|++++++.+.+.+++.++++++.+.+ +.++|+...+ ..+...+++. ++|...+ + . ..+.
T Consensus 114 rll~-~~Fs~~~l~~~~~~i~~~~~~lld~l~~--~g~~D~v~~~a~~l~~~vi~~-llg~~~~-----d-~----~~~~ 179 (417)
T 4dxy_A 114 KALD-KGLNLAKIRKVEDKVREVASSLIDSFAA--RGECDFAAEYAELFPVHVFMA-LADLPLE-----D-I----PVLS 179 (417)
T ss_dssp HHHH-HHHCHHHHHTTHHHHHHHHHHHHHHHHT--TSEEEHHHHTTTTHHHHHHHH-HTTCCGG-----G-H----HHHH
T ss_pred HHhh-hhcCHHHHHHHHHHHHHHHHHHHHHhhh--cCCeeeHHHHHhhhHHHHHHH-HcCCCHH-----H-H----HHHH
Confidence 9995 8999999999999999999999999976 4578865544 4566666665 5675441 1 1 3444
Q ss_pred HHHHHHHHhhcccccchhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHHhhcccCCC
Q 036271 207 EMLDELFLLNGVLNIGDWIPWLDFLDLQGYVKRMKALKKKFDRFHDHVFDEHKANRKGNLKDFVPKDMVDLLLQMADDPN 286 (301)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~d~ld~lL~~~~d~~ 286 (301)
+....+... . ...| ....+......+.+..++.++|++|++. . .+|+++.|+.. ..
T Consensus 180 ~~~~~~~~~---~---~~~~-------~~~~~~~~~~~~~~~~~~~~li~~rr~~----~----~ddl~s~L~~~-~~-- 235 (417)
T 4dxy_A 180 EYARQMTRP---E---GNTP-------EEMATDLEAGNNGFYAYVDPIIRARVGG----D----GDDLITLMVNS-EI-- 235 (417)
T ss_dssp HHHHHHHSC---C---CSSH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTC----C----CCSHHHHHHTC-EE--
T ss_pred hhhhhhccc---c---ccCh-------HHHHHHHHHHHHHHHHHHHHHHHHHhcC----C----ccchhhhhccc-cc--
Confidence 443332211 0 0111 1122344556677788888888777542 2 57999999983 22
Q ss_pred CcccCcccchheec
Q 036271 287 LDVKLNYDSVRGFT 300 (301)
Q Consensus 287 ~~~~lt~~~i~~~~ 300 (301)
++..+|++++.+.|
T Consensus 236 ~~~~~~~~e~~~~~ 249 (417)
T 4dxy_A 236 NGERIAHDKAQGLI 249 (417)
T ss_dssp TTEECCHHHHHHHH
T ss_pred cCCccchhHHHHHH
Confidence 24568999887654
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.15 E-value=4.6e-09 Score=93.58 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=85.2
Q ss_pred CCCC-CCCCcccccccc-----CCCCchHHHHHHHHhhCCceEEecCCccEEEecCHHHHHHHHHhCCcccccCCCCCcc
Q 036271 31 FPAG-PKPWPIIGNLNL-----IGPLPHQSLHKLSQKYGQIMQLKFGSFPVVVAASAEMAKQFLQTHDHIFASRPQTAAG 104 (301)
Q Consensus 31 ~ppg-P~~~PllGnl~~-----~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvi~dp~~~keil~~~~~~f~~R~~~~~~ 104 (301)
+||| |+++|++|+... +..+|+..+.++.++ ||++.. .+.+++++++.++++|.+. .|++++.....
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d~--~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDDP--AFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHCS--SEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcCC--CcCCCcccccc
Confidence 5677 558899998633 345788899988865 998755 4689999999999999863 57765431100
Q ss_pred c------ceeccCcceeeCCCChhhHHHHHHHHHhhccHHHHhhhHHHHHHHHHHHHHHHHhhcCCceehHHHH-HHHHH
Q 036271 105 K------HTTYNYLNLTWAPYGPYWRQGRKLYLSELFSSKRLESYQYIRVEEYRAFISRLYALSGKPVVLKEHL-SRVTL 177 (301)
Q Consensus 105 ~------~~~~~~~~~~~~~~g~~Wk~~Rk~l~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~g~~vd~~~~~-~~~t~ 177 (301)
. .......+ ++..+|+.| .+.|+ . .+.+++.++++++.|. | ++|+...+ ..+++
T Consensus 108 ~~~~~~~~~~~~~~~-l~~~dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~---g-~~Dl~~~~a~~l~~ 168 (381)
T 2yjn_B 108 WMRAAGAPPAEWAQP-FRDVHAASW--------EGEVP-----D-VGELAESFAGLLPGAG---A-RLDLVGDFAWQVPV 168 (381)
T ss_dssp HHHHHTCCHHHHTHH-HHHHHHCCC--------CSCCC-----C-CSCHHHHTSTTSCC----------CCCCCCTHHHH
T ss_pred cccccccccchhhhh-hhhCCchhh--------hhccC-----C-hHHHHHHHHHHHHhcc---C-cchHHHHHHHHHHH
Confidence 0 00001122 334568888 37788 3 6788899999988886 3 68887555 69999
Q ss_pred HHHHHHHhCcccc
Q 036271 178 SIISRTVLGKKYF 190 (301)
Q Consensus 178 ~ii~~~~fG~~~~ 190 (301)
+||+++ ||.+.+
T Consensus 169 ~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 169 QGMTAV-LGAAGV 180 (381)
T ss_dssp HHHHTC------C
T ss_pred HHHHHH-cCCCHH
Confidence 999995 998763
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.16 E-value=0.27 Score=33.91 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=46.1
Q ss_pred ccccccC-CCC-chHHHHHHHHhhC-CceEEecCCccEEEecCHHHHHHHHHh-CCcccccCCC
Q 036271 41 IGNLNLI-GPL-PHQSLHKLSQKYG-QIMQLKFGSFPVVVAASAEMAKQFLQT-HDHIFASRPQ 100 (301)
Q Consensus 41 lGnl~~~-~~~-~~~~~~~~~~~yG-~i~~~~lg~~~~vvi~dp~~~keil~~-~~~~f~~R~~ 100 (301)
+|||+.= ... ....+.++..+|| +|..+ .|+.-+|...+.+.|+.++.+ ++..+.+|+.
T Consensus 14 V~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 14 VYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 8999873 321 2345778899995 99888 679999999999999999975 6667778874
No 79
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=84.39 E-value=3.7 Score=26.67 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=41.4
Q ss_pred cccccccCCCC----chHHHHHHHHhhCCceEEecC-------CccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 40 IIGNLNLIGPL----PHQSLHKLSQKYGQIMQLKFG-------SFPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~----~~~~~~~~~~~yG~i~~~~lg-------~~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
++||++.-... -...+.+..++||+|..+.+. +.-.|-..+++.|+.++.. ++..+.+|
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 57787653211 235677888999999988875 3457888999999999975 44455554
No 80
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=84.33 E-value=4.6 Score=28.21 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=47.0
Q ss_pred CCCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEec---C---CccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 31 FPAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKF---G---SFPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 31 ~ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~l---g---~~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
.||.|..-=++||++.-. -...+.++.++||+|..+.+ + +.-+|-..+++.|+.++.. ++..+.+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKI--TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp CCTTCCSEEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCCCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 455565555899987532 24557788899999988887 2 3568888999999999874 55455444
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=82.42 E-value=3.2 Score=26.36 Aligned_cols=58 Identities=14% Similarity=0.304 Sum_probs=40.7
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+. +.-.|-..+++.++.++..++..+.+|+
T Consensus 3 ~v~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 69 (75)
T 1iqt_A 3 FVGGLSPDT--PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69 (75)
T ss_dssp EESCCCSSC--CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 466765431 245577888899999888873 2456788999999999986555555443
No 82
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.25 E-value=4.1 Score=28.18 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=42.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+. |.-.|...+++.|+.++..++..+.+|+
T Consensus 15 fV~~Lp~~~--te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 15 YIKGFPTDA--TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp EEECCCTTC--CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred EEECCCCCC--CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 678886532 245677888999999888763 3467888999999999975554555544
No 83
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=79.00 E-value=4.6 Score=28.38 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=42.3
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC-------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS-------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~-------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+++-. .=+|-..+++.|+.++.. ++..+.+|+
T Consensus 9 fV~nLp~~~--te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 9 FIKNLDKSI--DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EECCCCCCC--CHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 788886531 2456788889999998877632 347889999999999975 555555554
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=77.98 E-value=5.6 Score=25.14 Aligned_cols=58 Identities=14% Similarity=0.278 Sum_probs=39.7
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. ....+.++.++||+|..+.+-. .-.|-..+++.++.++.-++..+.+|+
T Consensus 3 ~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 69 (75)
T 2mss_A 3 FVGGLSVNT--TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM 69 (75)
T ss_dssp EEECCCSSC--CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC
T ss_pred EEecCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE
Confidence 467775531 2455778889999998888642 346778899999999865554554443
No 85
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.91 E-value=13 Score=24.85 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=42.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. -...+.++..+||+|..+.+- +.-+|-..+++.++.++.-++..+.+|+
T Consensus 14 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 14 FVGGIPHNC--GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp EEESCCSSC--CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 688887532 245678888999999888873 2356788999999999975665666665
No 86
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=75.59 E-value=5.9 Score=27.03 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=41.3
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+++.. .-.|-..+++.|+.++.. ++..+.+|+
T Consensus 23 fV~nLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 23 IVNYLPQNM--TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp EEESCCTTC--CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 688887631 1456778889999998887632 236888999999999875 555555554
No 87
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.27 E-value=14 Score=25.10 Aligned_cols=59 Identities=14% Similarity=0.256 Sum_probs=43.2
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecCCc----------cEEEecCHHHHHHHHHh--CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSF----------PVVVAASAEMAKQFLQT--HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~----------~~vvi~dp~~~keil~~--~~~~f~~R~ 99 (301)
=++||++.-. -...+.++.++||+|..+.+-.. -+|-..+++.|+.++.. ++..+.+|+
T Consensus 18 l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 18 ILVRNIPFQA--NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp EEEESCCTTC--CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred EEEeCCCCcC--CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 3688887531 24567888899999998887433 46778999999999875 465666664
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=73.34 E-value=9.1 Score=25.81 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=42.6
Q ss_pred CCccccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 37 PWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 37 ~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
.+=++||+..-.. ...+.++..+||+|..+++. |--.|-..+++.|+.+... ++..+.+|+
T Consensus 8 ~wL~VgNL~~~~t--e~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~ 72 (89)
T 2wbr_A 8 SWLLLKNLTAQID--GPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTT 72 (89)
T ss_dssp CEEEEECCCTTCC--CHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred ceEEEeCCCccCC--HHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 3557899865311 35688899999999988875 3467778899888877764 444554443
No 89
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.24 E-value=15 Score=25.52 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=43.1
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh-CCcccccCCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT-HDHIFASRPQ 100 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~-~~~~f~~R~~ 100 (301)
++||++.-. -...+.++.++||+|..+.+. +.-+|...+++.|+.++.. ++..+.+|+.
T Consensus 14 ~V~nLp~~~--te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 14 LAKNLPAGT--LAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEESCCTTC--CHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 577776521 245678888999999988873 3567888999999999875 5556666653
No 90
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=72.27 E-value=7.9 Score=26.29 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=40.5
Q ss_pred cccccccCCC----CchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCccccc
Q 036271 40 IIGNLNLIGP----LPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFAS 97 (301)
Q Consensus 40 llGnl~~~~~----~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~ 97 (301)
++||++.... .-...+.+...+||+|..+++. +.-.|-..+++.|+.++.. ++..+.+
T Consensus 10 fV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 10 VVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp EEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred EEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 6778776421 1234577788899999998874 3457888999999999864 4444544
No 91
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=72.16 E-value=12 Score=25.02 Aligned_cols=58 Identities=21% Similarity=0.398 Sum_probs=43.6
Q ss_pred ccccccc-CCCCchHHHHHHHHhhCCceEEecC-CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNL-IGPLPHQSLHKLSQKYGQIMQLKFG-SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~-~~~~~~~~~~~~~~~yG~i~~~~lg-~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++. -. -...+.++.++||+|..+.+. +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 14 ~V~nlp~~~~--t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 14 FIGNLPLKNV--SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp EEESSTTSCC--CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred EEeCCCcccC--CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 6888875 32 245678888999999888874 4677888999999999985 555565655
No 92
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=71.43 E-value=13 Score=25.34 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=44.0
Q ss_pred ccccccccCCCC----chHHHHHHHHhhCCceEEecC-------CccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 39 PIIGNLNLIGPL----PHQSLHKLSQKYGQIMQLKFG-------SFPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 39 PllGnl~~~~~~----~~~~~~~~~~~yG~i~~~~lg-------~~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
=++||++.-... -...+.++..+||+|..+++- +.-+|...+++.++.++.. ++..+.+|
T Consensus 18 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 18 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp EEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred EEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 378998764211 235678888999999988875 3557888999999999986 55556555
No 93
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=70.76 E-value=16 Score=25.50 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=43.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-.. ...+.++.++||+|..+.+- +.-+|...+++.++.++.. ++..+.+|.
T Consensus 20 ~V~nLp~~~t--~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 20 VVSGLPPSGS--WQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp EEEECCSSCC--TTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEeCCCCCCC--HHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 6899876321 34577788999999888874 4577888999999999975 555666665
No 94
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=70.36 E-value=17 Score=25.66 Aligned_cols=59 Identities=12% Similarity=0.297 Sum_probs=43.3
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRPQ 100 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~~ 100 (301)
++|||+.-. -...+.++..+||+|..+.+- +.-+|...+++.|+.++.. ++..+.+++.
T Consensus 26 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 26 FVTGVHEEA--TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp EEESCCTTC--CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 678886531 245677888999999988873 2457889999999999964 6666666653
No 95
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=68.44 E-value=16 Score=24.80 Aligned_cols=58 Identities=12% Similarity=0.313 Sum_probs=41.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+. +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 27 ~V~nlp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 27 FVTGVHEEA--TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp EEECCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEeCCCCCC--CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 678876531 245678888999999888763 2356778999999999975 555555554
No 96
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.40 E-value=21 Score=23.51 Aligned_cols=61 Identities=18% Similarity=0.313 Sum_probs=43.6
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCCC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRPQ 100 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~~ 100 (301)
-=++||++.-. ....+.++.++||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+.
T Consensus 7 ~l~v~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 7 GLYVGSLHFNI--TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp EEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 33688886531 2456788889999998887632 346788999999999974 5556666653
No 97
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=68.04 E-value=20 Score=23.02 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=41.7
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
-=++||++.-. ....+.++.++||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 9 ~l~V~nl~~~~--~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 9 VLYVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp EEEEECCCTTC--CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEECCCCCC--CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 34788886532 245677888999999888873 2357888999999999864 55445444
No 98
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=67.20 E-value=17 Score=23.51 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=41.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC----------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG----------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg----------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 8 ~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 8 HIGRLTRNV--TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp EEECCCTTC--CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 577876531 235677888899999888762 2457888999999999985 555555554
No 99
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=66.99 E-value=16 Score=28.91 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=43.4
Q ss_pred ccccccc-CCCCchHHHHHHHHhhCCceEEecC----CccEEEecCHHHHHHHHH-hCCcccccCC
Q 036271 40 IIGNLNL-IGPLPHQSLHKLSQKYGQIMQLKFG----SFPVVVAASAEMAKQFLQ-THDHIFASRP 99 (301)
Q Consensus 40 llGnl~~-~~~~~~~~~~~~~~~yG~i~~~~lg----~~~~vvi~dp~~~keil~-~~~~~f~~R~ 99 (301)
++||++. -. -...+.++.++||+|..+.+- +.-+|-..+++.|+.++. -++..+.+|+
T Consensus 38 ~V~nLp~~~~--te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 38 LVSNLNPERV--TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp EEESCCTTTC--CHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred EEeCCCcccC--CHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 6888865 22 235677888999999988875 456888999999999996 3555666665
No 100
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.12 E-value=21 Score=23.79 Aligned_cols=58 Identities=24% Similarity=0.394 Sum_probs=41.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 12 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 12 FVRNLSYTS--SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp EEECCCTTC--CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 678886531 2456788889999999888742 357888999999999954 444555554
No 101
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.88 E-value=18 Score=24.16 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=41.0
Q ss_pred cccccccCCCCchHHHH----HHHHhhCCceEEecC------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLH----KLSQKYGQIMQLKFG------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~----~~~~~yG~i~~~~lg------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-.. ...+. ++.++||+|..+++- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 13 ~V~nL~~~~~--~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 13 QVSNIDYRLS--RKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp EEESCCTTSC--HHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEECCCCCCC--HHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 6888875311 23344 888999999988874 3357788899999999874 555555554
No 102
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=65.85 E-value=24 Score=26.72 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=39.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC-----CccEEEecCHHHHHHHHHh-CCcccc
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG-----SFPVVVAASAEMAKQFLQT-HDHIFA 96 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg-----~~~~vvi~dp~~~keil~~-~~~~f~ 96 (301)
.+||+..-. -...+.+...+||.|-++++. +.-+|-..|.+.+++++.. ++..+.
T Consensus 50 ~VgNL~~~v--ted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 50 IVENLFYPV--TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp EECSCCSCC--CHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred EEeCcCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 378886521 245678888999999888873 2457888899999999875 444443
No 103
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=65.84 E-value=13 Score=24.97 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=40.7
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC----CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG----SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg----~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+. +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 4 ~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 4 YVGNLGTGA--GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp EEECCCSSC--SHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 467776521 245678888999999888863 3567788999999999874 444555554
No 104
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=65.17 E-value=15 Score=25.36 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=42.1
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
=++||++.-. -...+.++.++||+|..+.+-. .-+|...+++.++.++...+..+.+|.
T Consensus 28 lfV~nLp~~~--te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~ 95 (109)
T 2rs2_A 28 MFIGGLSWQT--TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 95 (109)
T ss_dssp EEEESCCTTC--CHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE
Confidence 3788886531 2355778889999998888732 347888999999999976554444443
No 105
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=64.58 E-value=14 Score=25.72 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=42.0
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++|||..-. -...+.++.++||+|..+++- +.-.|...+++.|+.++.. ++..+.+|+
T Consensus 9 lfV~nL~~~~--te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 9 VTFARLNDNV--RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp EEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCCCC--CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3688987532 245678888999999888763 1247889999999999975 544454443
No 106
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=64.43 E-value=20 Score=23.82 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=40.7
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 6 ~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 6 YLGSIPYDQ--TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp EEESCCTTC--CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 577776431 245678888999999988873 2357788999999999864 444454443
No 107
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=64.27 E-value=20 Score=24.52 Aligned_cols=58 Identities=9% Similarity=0.196 Sum_probs=41.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+. +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 30 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 30 FVTSIHEEA--QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 688886531 245678888999999988874 2457888999999999874 554554443
No 108
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=64.00 E-value=20 Score=24.25 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=43.0
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC-CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG-SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg-~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++||++.-. -...+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 14 l~V~nl~~~~--t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 14 LFVRNLANTV--TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp EEEECCCTTC--CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 3788887531 245677888999999988874 4567788999999999875 555555543
No 109
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=63.87 E-value=13 Score=23.77 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=40.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 5 ~V~nlp~~~--t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 5 FVGDLNVNV--DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp EEECCCTTC--CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 467775431 235577888999999887763 1347888999999999875 555555543
No 110
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=63.65 E-value=11 Score=24.57 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=40.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+-. .-.|-..+++.++.++.-++..+.+|+
T Consensus 10 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~ 76 (89)
T 3ucg_A 10 YVGNVDYGA--TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 76 (89)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcE
Confidence 467775431 2456788889999998877632 347888999999999944555555554
No 111
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=63.59 E-value=21 Score=24.92 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=42.6
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecCC--------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS--------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~--------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++||++.-. -...+.++.++||+|..+.+-. .-+|-..+++.|+.++.. ++..+.+|+
T Consensus 10 l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 10 LFIGGLNRET--NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp EEEECCTTTC--CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3678886531 2456788889999998877643 457888999999999975 555666664
No 112
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=63.10 E-value=11 Score=26.13 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=44.9
Q ss_pred CCCCCCccccccccC---CCCchHHHHHHHHhhCCceEEecCC----------ccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 33 AGPKPWPIIGNLNLI---GPLPHQSLHKLSQKYGQIMQLKFGS----------FPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 33 pgP~~~PllGnl~~~---~~~~~~~~~~~~~~yG~i~~~~lg~----------~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
|.|...=+|+|+... ......-+.+..++||+|..+++.. .-.|-..+++.|+.++.. ++..|.+|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 445555678887642 2223455667778999998887631 235778899999988875 66677766
Q ss_pred CC
Q 036271 99 PQ 100 (301)
Q Consensus 99 ~~ 100 (301)
+.
T Consensus 85 ~i 86 (105)
T 2pe8_A 85 VV 86 (105)
T ss_dssp EC
T ss_pred EE
Confidence 53
No 113
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=61.99 E-value=13 Score=24.19 Aligned_cols=58 Identities=17% Similarity=0.375 Sum_probs=40.7
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHhCCcccccC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQTHDHIFASR 98 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~~~~~f~~R 98 (301)
=++||++.-. ....+.++.++||+|..+.+- +.-.|-..+++.++.++...+..+.+|
T Consensus 14 l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 80 (87)
T 3s7r_A 14 MFVGGLSWDT--SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGR 80 (87)
T ss_dssp EEEECCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCE
Confidence 3788887532 245677888999999887762 135677889999999996655444443
No 114
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.97 E-value=19 Score=23.70 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=41.7
Q ss_pred CCccccccccCCCCchHHHHHHHHhhCCceEEecC------C---ccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 37 PWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG------S---FPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 37 ~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg------~---~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
..=++||++.-. -...+.++.++||+|..+.+- . .-+|-..+++.++.++.. ++..+.+|
T Consensus 16 ~~l~v~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 16 CCLGVFGLSLYT--TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp GCEEEESCCSSC--CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEEEECCCCCC--CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 334788887531 245678888999999888763 1 346778999999999975 54444444
No 115
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=61.86 E-value=40 Score=23.97 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=42.5
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
.=++|||+.-. -...+.++.++||+|..+.+- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 48 ~l~V~nLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 48 CLGVFGLSLYT--TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CBCEETCTTSC--CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34688886531 235678888999999888873 2356788999999999975 554555554
No 116
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=61.74 E-value=31 Score=22.95 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=40.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceE--------EecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQ--------LKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~--------~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
.+||++.-. -...+.++.++||.|.. +.+- +.-.|...+++.++.++.. ++..+.+|+
T Consensus 17 ~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 17 FVQGLGENV--TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp EEECCCSSC--CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEeCCCCCC--CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 688886532 24567888899999876 5542 1346778899999999864 555555543
No 117
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=61.67 E-value=18 Score=24.94 Aligned_cols=58 Identities=22% Similarity=0.392 Sum_probs=41.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++..+||+|..+.+ -+.-+|...+++.++.++.. ++..+.+|+
T Consensus 35 ~V~nLp~~~--t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 35 FVRPFPLDV--QESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp EECSSCTTC--CHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCCC--CHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 578876531 24567888899999988776 35677888999999999875 555555543
No 118
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.63 E-value=22 Score=23.32 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=42.3
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC-ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS-FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~-~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 14 ~V~nLp~~~--t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 14 HVGNISPTC--TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp EEESCCSSC--CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 688886532 2456788889999998888753 566778899999999865 555555554
No 119
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.50 E-value=11 Score=23.69 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=38.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. ....+.+..++||+|..+.+.. .-.|-..+++.++.++......+.+|+
T Consensus 4 ~v~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 70 (77)
T 1uaw_A 4 FIGGLSWQT--TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 70 (77)
T ss_dssp EEESCCSSC--CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE
Confidence 467776531 1345778888999988777632 335667899999999976444444443
No 120
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=61.38 E-value=14 Score=23.85 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=40.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
++||++.-. -...+.++.++||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|
T Consensus 10 ~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 10 FVGDLSPEI--TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 678886531 2456788889999998877632 346788999999999975 54444444
No 121
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.80 E-value=25 Score=23.94 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=42.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 29 ~V~nl~~~~--t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 29 YCGGIASGL--TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp EEECCSSCC--CHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 678887531 245677888999999888874 4567888999999999865 555555554
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=60.72 E-value=20 Score=24.98 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=43.1
Q ss_pred cccccccCCCCchHHHHHHHHhhC-CceEEecC-----CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYG-QIMQLKFG-----SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG-~i~~~~lg-----~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++|| .|..+.+. +.-+|-..+++.++.++.+ ++..+.+|+
T Consensus 32 ~VgnLp~~~--te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 32 TMKNLPEGC--SWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp EEECSSCCC--CHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEECCCCCC--CHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 789987632 2456888889999 88887773 4578888999999999976 455555554
No 123
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.61 E-value=32 Score=23.01 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=42.5
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC-------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG-------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg-------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++|||+.-. -...+.++.++||+|..+.+- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 18 l~V~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 18 LHVSNIPFRF--RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp EEEESCCTTC--CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3688886531 245577888999999888763 3457888999999999875 555555554
No 124
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.37 E-value=27 Score=23.27 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=42.5
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
-=++||++.-. -...+.++.++||+|..+++- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 19 ~l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 19 KLFISGLPFSC--TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34688886531 235577888999999888763 2357888999999999865 555555544
No 125
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.35 E-value=12 Score=25.40 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=42.7
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
=++|||+.-. -...+.++.++||+|..+.+-. .-+|-..+++.++.++..++..+.+|+
T Consensus 19 l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 19 LFVGGLDWST--TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp ECCBSCCTTC--CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 3688886532 2456778889999998777632 346788999999999987655666654
No 126
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=60.07 E-value=33 Score=22.34 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=41.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC-------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG-------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg-------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. ....+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 12 ~V~nlp~~~--t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 12 FVRNLPFDF--TWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp EECSCCTTC--CHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 688887531 245678888999998877753 2356778899999999875 555566654
No 127
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.98 E-value=31 Score=23.10 Aligned_cols=64 Identities=23% Similarity=0.205 Sum_probs=44.6
Q ss_pred CCCCCccccccccCCCCchHHHHHHHHhhCCceEEecC-------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 34 GPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG-------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 34 gP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg-------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
-+..-=++||++.-. -...+.++.++||+|..+.+- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 13 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGI--DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp SSCCCEEEECCCTTC--CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 344444788887531 235577888899999887764 2456888999999999975 555565554
No 128
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.79 E-value=27 Score=22.87 Aligned_cols=58 Identities=12% Similarity=0.245 Sum_probs=40.9
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCccccc
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFAS 97 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~ 97 (301)
.=++||++.-. -...+.++.++||+|..+.+-. .-+|-..+++.++.++.. ++..+.+
T Consensus 18 ~l~V~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 18 TVYVSNLPFSL--TNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp SEEEESCCTTS--CHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred EEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 34788887531 2455788889999998888732 357888999999999964 3334433
No 129
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.73 E-value=37 Score=22.80 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=42.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 19 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 19 YVGGLDEKV--SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp EEECCCTTC--CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 688886532 2456788889999998888743 347888999999999986 555565554
No 130
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.60 E-value=21 Score=24.04 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=42.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+.+- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 17 ~V~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 17 KVDNLTYRT--SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp EEESCCTTC--CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 688887532 245678888999999988874 2457888999999999974 555666654
No 131
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.35 E-value=34 Score=22.26 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=43.8
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecC-CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG-SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg-~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
-=++||++.-. -...+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 11 ~l~V~nlp~~~--t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 11 KIFVGNVSAAC--TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp CEEEESCCTTC--CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34789987631 245677888999999888875 3567888999999999875 555555554
No 132
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=58.93 E-value=20 Score=24.69 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=41.3
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+.+-. .-+|...+++.|+.++.. ++..+.+|+
T Consensus 19 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 19 FVGDLSPEI--TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 688886531 2456788889999998877632 347888999999999975 444555543
No 133
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=58.93 E-value=33 Score=22.87 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=41.2
Q ss_pred ccccccc-CCCCchHHHHHHHHhhCCceEEecC-CccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 40 IIGNLNL-IGPLPHQSLHKLSQKYGQIMQLKFG-SFPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 40 llGnl~~-~~~~~~~~~~~~~~~yG~i~~~~lg-~~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
++||+.. -. -...+.++.++||+|..+.+. +.-+|-..+++.++.++.. ++..+.+|
T Consensus 26 ~V~nLp~~~~--t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 26 FIGNLPLKNV--SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp EEESCCSSCC--CHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred EEeCCCcccC--CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 6888874 21 245678888999999988874 4567888999999999874 44344443
No 134
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=58.89 E-value=30 Score=22.77 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=41.5
Q ss_pred ccccccccC-CC-CchHHHHHHHHhhCCceEEecC------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLI-GP-LPHQSLHKLSQKYGQIMQLKFG------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~-~~-~~~~~~~~~~~~yG~i~~~~lg------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++||++.- .. .....+.++..+||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 11 l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 368888753 21 1112333888999999888764 4567889999999999875 554554443
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.84 E-value=25 Score=23.96 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=41.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--CccEEEecCHHHHHHHHHh-CCccccc
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--SFPVVVAASAEMAKQFLQT-HDHIFAS 97 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--~~~~vvi~dp~~~keil~~-~~~~f~~ 97 (301)
++|||+.-. -...+.++.++||+|..+.+- +.-+|...+++.++.++.. ++..+.+
T Consensus 19 ~V~nLp~~~--t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 19 VVSGLPPSG--SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp EEESCCSSC--CHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 688887532 245678888999999888764 4677888999999999985 4444544
No 136
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=58.68 E-value=13 Score=26.15 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=45.7
Q ss_pred CCCCCCCccccccccCCC--Cc------hHHHHHHHHhhCCceEEecC-----CccEEEecCHHHHHHHHHh-CCccccc
Q 036271 32 PAGPKPWPIIGNLNLIGP--LP------HQSLHKLSQKYGQIMQLKFG-----SFPVVVAASAEMAKQFLQT-HDHIFAS 97 (301)
Q Consensus 32 ppgP~~~PllGnl~~~~~--~~------~~~~~~~~~~yG~i~~~~lg-----~~~~vvi~dp~~~keil~~-~~~~f~~ 97 (301)
||.|...=+|-|+..... .+ ..-+.+...+||.|..+.+- |.-.|-..+++.|+.++.. ++..|.+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 566766667888765421 11 12344556789999988873 3457778899999988875 6666766
Q ss_pred CC
Q 036271 98 RP 99 (301)
Q Consensus 98 R~ 99 (301)
|+
T Consensus 83 R~ 84 (114)
T 3s6e_A 83 KM 84 (114)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 137
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=58.48 E-value=17 Score=26.40 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=42.9
Q ss_pred CCCCCCCCc--cccccccCCCCchHHHHHHHHhhCCceEEecCC-----ccEEEecCHHHHHHHHHh-CCccccc
Q 036271 31 FPAGPKPWP--IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS-----FPVVVAASAEMAKQFLQT-HDHIFAS 97 (301)
Q Consensus 31 ~ppgP~~~P--llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~-----~~~vvi~dp~~~keil~~-~~~~f~~ 97 (301)
++++|.+.- .+||+..-. -...+.++..+||.|-++.+.. +-+|...|++.|+.++.. ++..+.+
T Consensus 21 ~~~~ps~VL~I~V~NL~~~v--te~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPV--TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp ----CCSEEEEEEESCCSCC--CHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ccCCCCceEEEEECCCCCCC--CHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 445555433 489986531 2456888899999998888743 367888999999988865 5544444
No 138
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=58.46 E-value=20 Score=25.76 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=41.6
Q ss_pred cccccccC-CC-CchHHHHHHHHhhCCceEEecC------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLI-GP-LPHQSLHKLSQKYGQIMQLKFG------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~-~~-~~~~~~~~~~~~yG~i~~~~lg------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||..- .. .....+.++..+||+|..+.+. |.-+|...+++.|..++.. ++..+.+|+
T Consensus 33 fV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 33 LITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 67888753 21 1112355788999999888763 3567888999999999875 555566665
No 139
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=58.11 E-value=15 Score=24.18 Aligned_cols=58 Identities=22% Similarity=0.378 Sum_probs=38.9
Q ss_pred cccccccCCCCchHHHHHHHHhhC--CceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYG--QIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG--~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||+..-. -...+.++.++|| +|..+++-. .-.|...+++.++.++.. ++..+.+|+
T Consensus 5 ~V~nL~~~~--t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 5 YIGNLTWWT--TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp EEESCCTTC--CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEeCCCCCC--CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 577876532 2456778889999 887776522 246778899999999864 444565654
No 140
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=57.90 E-value=19 Score=24.81 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHHHHHHhhCCceEEecCC-----------ccEEEecCHHHHHHHHHh-CCcccccCCC
Q 036271 54 SLHKLSQKYGQIMQLKFGS-----------FPVVVAASAEMAKQFLQT-HDHIFASRPQ 100 (301)
Q Consensus 54 ~~~~~~~~yG~i~~~~lg~-----------~~~vvi~dp~~~keil~~-~~~~f~~R~~ 100 (301)
-+.+...+||+|..+++.. .-.|-..+++.|+.++.. ++..|.+|+.
T Consensus 31 dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i 89 (105)
T 3v4m_A 31 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 89 (105)
T ss_dssp HHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred HHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 4556667999999998742 236778899999988865 6667777753
No 141
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.53 E-value=26 Score=23.56 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=41.9
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecCC-------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS-------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~-------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++|||+.-. -...+.++.++||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 18 l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 18 LYVGNLSRDV--TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp EEEESCCTTC--CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEeCCCccC--CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 3788887531 2456788889999998887632 457888999999999874 444555543
No 142
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.40 E-value=14 Score=25.39 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=41.1
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC-------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG-------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg-------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||+..-. -...+.++.++||+|..+.+- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 33 ~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 33 HVSNIPFRF--RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp EEESCCTTC--CHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCcC--CHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 678876531 245677888999999888773 3457788999999999875 554555543
No 143
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.75 E-value=30 Score=22.93 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=43.3
Q ss_pred CCCCccccccccCCCCchHHHHHHHHhhCCce-EEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 35 PKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIM-QLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 35 P~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~-~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
|..-=++||++.-. -...+.++.++||+|. .+++-. .-+|-..+++.++.++.. ++..+.+|.
T Consensus 8 ~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 8 MAASLWMGDLEPYM--DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSEEEECSCCTTC--CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CccEEEEeCCCCCC--CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 33334788887532 2456778889999988 777632 346778999999999975 455555554
No 144
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.67 E-value=27 Score=23.44 Aligned_cols=57 Identities=14% Similarity=0.324 Sum_probs=39.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
++||++.-. ....+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|
T Consensus 12 ~V~nlp~~~--~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 12 FVGNIPYEA--TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp EEESCCTTS--CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred EEeCCCCcC--CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 678876421 245677888999998877763 2346778999999999964 44444444
No 145
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=56.65 E-value=30 Score=23.09 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=40.7
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||.|..+.+. +.-+|-..+.+.++.++.. ++..+.+|.
T Consensus 31 ~V~nlp~~~--~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 31 YIGNIPHFA--TEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp EEESCCTTC--CHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEcCCCccc--CHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 678876521 245677888999999888874 3456777899999998865 444444443
No 146
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=56.22 E-value=16 Score=25.67 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=40.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. -...+.++..+||+|..+.+- +.-+|...+.+.++.++.-++..+.+|+
T Consensus 40 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 106 (124)
T 2jwn_A 40 YVGNVDYGS--TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT 106 (124)
T ss_dssp EEEEECTTC--CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 567775431 245678888999999877762 2347888999999999943555555554
No 147
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.22 E-value=18 Score=24.92 Aligned_cols=57 Identities=7% Similarity=0.007 Sum_probs=39.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHhCCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQTHDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~~~~~f~~R 98 (301)
++|||..-. -...+.++.++||.|..+.+- +.-+|-..+++.++.++.-++..+.+|
T Consensus 29 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 94 (114)
T 2cq4_A 29 FCMQLAARI--RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGV 94 (114)
T ss_dssp EEESCCTTC--CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTE
T ss_pred EEeCCCCCC--CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCe
Confidence 577776531 235677888999999988874 245678899999999994355444443
No 148
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.20 E-value=32 Score=22.74 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=42.4
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC------------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG------------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg------------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++||++.-. -...+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 8 l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 8 LFIKNLNFST--TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp EEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 3688887531 245677888999999877763 2457788999999999986 555555554
No 149
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=56.18 E-value=23 Score=23.32 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=41.3
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC--------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS--------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~--------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. ....+.++.++||+|..+++.. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 20 ~v~nlp~~~--~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 20 FVGNLEARV--REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp EEECCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCCC--CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 688886531 2456788889999998887742 347788999999999874 554454443
No 150
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.16 E-value=26 Score=24.18 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=41.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+++-. .-+|-..+++.++.++..-...+.+|+
T Consensus 21 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 87 (116)
T 2cqd_A 21 FVGGLPYHT--TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 87 (116)
T ss_dssp EEECCCSSC--CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEE
Confidence 688886532 2456778889999998888753 347788999999999976433454543
No 151
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.08 E-value=39 Score=21.94 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=42.5
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC-CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG-SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg-~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++||++.-. -...+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 11 l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 11 LFIGNLPREA--TEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp EEEESCCSSC--CHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 3688887632 245678888999999888764 4567888999999999864 444555554
No 152
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.02 E-value=26 Score=23.31 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=41.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||+ .+ -...+.++.++||+|..+.++ +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 19 ~V~n~-~~---t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 19 YVYGE-DM---TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp EEECS-SC---CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEcCC-CC---CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 67884 32 245678888999999998886 3456778899999999975 554555543
No 153
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.94 E-value=9.4 Score=26.46 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=42.5
Q ss_pred CccccccccCCCCchHHHH---HHHHhhCCceEEecCC------------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 38 WPIIGNLNLIGPLPHQSLH---KLSQKYGQIMQLKFGS------------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~---~~~~~yG~i~~~~lg~------------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
.=++|||+.-.. ...+. ++..+||+|..+.+-. .-.|...+++.|+.++.. ++..+.+|+
T Consensus 17 ~l~V~nLp~~~~--~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 17 LVFVVGLSQRLA--DPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CEEEEEECTTTC--CHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEECCCCCCC--HHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 337888876321 23455 7778999998877642 446778999999999986 666666665
No 154
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.88 E-value=38 Score=22.41 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=39.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCce-EEecC---CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIM-QLKFG---SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~-~~~lg---~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|- .+-.+ +.-+|...+++.++.++.. ++..+.+|+
T Consensus 23 ~V~nL~~~~--t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 23 YVGNLPRDA--RVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp EEECCCTTC--CHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEeCCCCcC--cHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 688886531 2456778889999973 33322 4567788999999999865 555555554
No 155
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.46 E-value=26 Score=23.72 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=42.5
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceE-EecC--------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQ-LKFG--------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~-~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.+.||.|.. +.+. +.-+|...+++.++.++..++..+.+|+
T Consensus 19 ~V~nLp~~~--te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 19 RLRGLPFGC--SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp EEESCCTTC--CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 688887642 13557788889998765 5542 3467888999999999988666666665
No 156
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.28 E-value=19 Score=24.07 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=42.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+++. +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 19 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 19 FVGNLPPDI--TEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp EEESCCTTC--CHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred EEeCCCCCC--CHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 688887531 245678888999999888875 3456778899999999865 555565554
No 157
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=55.02 E-value=46 Score=24.14 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=42.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC----CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG----SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg----~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+. +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 77 ~V~nl~~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 77 YVGNLGNNG--NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp EEESCCSCC--SCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred EEeCCCCCC--CHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 688886531 134577888999999988874 3567888999999999974 555565554
No 158
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=54.99 E-value=48 Score=24.19 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=42.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc---------cEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSF---------PVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~---------~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+.+... -+|-..+.+.++.++.. ++..+.+|+
T Consensus 74 ~v~nl~~~~--~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 74 KVDNLTYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp EEESCCTTC--CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 678876531 24557788899999998887532 47888999999999976 555666654
No 159
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=54.69 E-value=39 Score=23.05 Aligned_cols=58 Identities=21% Similarity=0.397 Sum_probs=41.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 30 ~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 30 YVGSLHFNI--TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp EEECCCSSC--CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 688886531 245677888999999887763 2457888999999999864 554555554
No 160
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=54.63 E-value=26 Score=26.09 Aligned_cols=58 Identities=9% Similarity=0.196 Sum_probs=41.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++..+||+|..+.+. +.-+|-..+++.++.++.. ++..+.+++
T Consensus 76 ~V~nLp~~~--t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 76 FVTSIHEEA--QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 678886531 245678888999999887763 2457888999999999875 555555544
No 161
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.49 E-value=14 Score=25.59 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=41.5
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+.+-. .-+|...+++.++.++..++..+.+|+
T Consensus 31 ~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 31 FIGGLSFET--TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp EEECCTTCC--CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 678886531 2456778889999998877632 346778899999999977555565554
No 162
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=53.71 E-value=35 Score=22.90 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=40.1
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHh-CCccccc
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQT-HDHIFAS 97 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~-~~~~f~~ 97 (301)
=++|||+.-. -...+.++.++||+|..+.+- +.-+|-..+++.|+.++.. ++..+.+
T Consensus 18 l~v~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 18 LFVGMLNKQQ--SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp EEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 3688886532 245678888999999887764 2356778999999999864 4444443
No 163
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=53.62 E-value=30 Score=24.90 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=42.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 51 ~V~nLp~~~--te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 51 KVDNLTYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp EEECCCSSC--HHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 578876531 2456778889999999888743 357889999999999975 444555554
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=53.25 E-value=29 Score=25.41 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=40.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+-. .-.|-..+++.|+.++..++..+.+|+
T Consensus 91 ~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 91 FVGGIGPDV--RPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp EEEEECTTC--CHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred EECCCCCCC--CHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 577776521 2455778888999998887643 346788899999999975554555554
No 165
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=52.91 E-value=26 Score=25.76 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=42.7
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++|||+.-. -...+.++.++||+|..+.+- +.-+|...+++.|+.++.. ++..+.+|+
T Consensus 42 l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 42 LYVGNLSFYT--TEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp EEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3688886531 245678888999999888872 1347888999999999985 555555554
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=52.66 E-value=31 Score=22.65 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=36.9
Q ss_pred CCCCccccccccCCCCchHHHHHHHHhhCCceEEecC----CccEEEecCHHHHHHH
Q 036271 35 PKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG----SFPVVVAASAEMAKQF 87 (301)
Q Consensus 35 P~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg----~~~~vvi~dp~~~kei 87 (301)
|...=++|||+.-.. ...+.+..++||+|..+++- |.-.|-..+++.|+.+
T Consensus 10 ~~~~l~V~~Lp~~~t--e~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMT--AEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp -CCEEEEESCCTTCC--HHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCCCC--HHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 333447899876321 35678888999999998875 4567888999999853
No 167
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=52.63 E-value=29 Score=24.46 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=41.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||+ .+ -...+.++.++||+|..+.++ +.-+|...+++.|+.++.. ++..+.+|+
T Consensus 43 fVgnl-~~---te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 43 YVYGE-DM---TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp EEECS-SC---CHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEcCC-CC---CHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 67884 22 245678888999999888876 4567778899999999865 555565554
No 168
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.60 E-value=25 Score=22.56 Aligned_cols=62 Identities=23% Similarity=0.158 Sum_probs=41.0
Q ss_pred CCCCccccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 35 PKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 35 P~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
|..-=++||++.-. ....+.++.++||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|
T Consensus 4 ~~~~l~v~nlp~~~--t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGT--TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCEEEEESCCTTC--CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 33334688886532 2345777788999998887532 346788999999999864 33344444
No 169
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=52.48 E-value=45 Score=22.87 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=41.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 29 ~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 29 FIYHLPQEF--GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp EEESCCSSC--CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 688887532 2456788889999998877632 246778999999999965 555555554
No 170
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.38 E-value=47 Score=21.86 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=41.4
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecCC---ccEEEecCHHHHHHHHHh-CCcccc
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---FPVVVAASAEMAKQFLQT-HDHIFA 96 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---~~~vvi~dp~~~keil~~-~~~~f~ 96 (301)
-=++||++.-. -...+.++.++||+|..+++-. .-+|-..+++.++.++.. ++..+.
T Consensus 19 ~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 19 RLWVGGLGPNT--SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CEEEECCCSSC--CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34788887532 2456788889999999888753 567778899999999874 444554
No 171
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=52.35 E-value=31 Score=24.66 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=41.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||+..-. -...+.++.++||+|..+.+- +.-+|...+++.|+.++.. ++..+.+|+
T Consensus 46 ~V~nLp~~~--~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 46 MVNYIPTTV--DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp EEESCSTTC--CHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 577776521 235678888999999887763 1356888999999999975 555555554
No 172
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=52.02 E-value=29 Score=25.82 Aligned_cols=58 Identities=21% Similarity=0.424 Sum_probs=39.8
Q ss_pred cccccccCCCCchHHHHHHHHhhC--CceEEecC-----C----ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYG--QIMQLKFG-----S----FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG--~i~~~~lg-----~----~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||..-. -...+.++..+|| +|..+++- + .-+|...+++.++.++.. ++..+.+|+
T Consensus 59 fVgnLp~~~--te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 59 YVGSFSWWT--TDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp EEECCCTTC--CHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 456664421 2356788889999 88888762 1 357888999999999987 555554443
No 173
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.84 E-value=50 Score=22.00 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=44.4
Q ss_pred CCCCCccccccccCCCCchHHHHHHHHh-hCCceEEecC--------CccEEEecCHHHHHHHHHh-CCcc-cccCCC
Q 036271 34 GPKPWPIIGNLNLIGPLPHQSLHKLSQK-YGQIMQLKFG--------SFPVVVAASAEMAKQFLQT-HDHI-FASRPQ 100 (301)
Q Consensus 34 gP~~~PllGnl~~~~~~~~~~~~~~~~~-yG~i~~~~lg--------~~~~vvi~dp~~~keil~~-~~~~-f~~R~~ 100 (301)
.|..-=++|||+.-. -...+.++..+ ||+|..+.+- +.-+|-..+++.++.++.. ++.. +.+|+.
T Consensus 7 ~~~~~l~V~nLp~~~--t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDV--DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTC--CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCcEEEEeCCCCCC--CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 343444789987632 13557778888 9999887762 2356788999999999975 4445 666653
No 174
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=51.20 E-value=28 Score=23.53 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=40.7
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 33 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 33 LVSNLDFGV--SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp EEESCCTTC--CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 688886531 235577888899999877753 2357778899999999885 555554443
No 175
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.94 E-value=30 Score=23.08 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=42.9
Q ss_pred CCccccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 37 PWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 37 ~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
.-=++||++.-. -...+.++.++||+|..+.+.. .-+|-..+++.|+.++.. ++..+.+|+
T Consensus 13 ~~l~V~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 13 RVLYVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp SCEEEESCCSSC--CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 344789987632 2456788889999998888732 346777899999999865 555555554
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=50.76 E-value=19 Score=27.84 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=41.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.- .....+.++..+||+|..+++- |.-.|...+++.|+.++...+..+.+|+
T Consensus 113 ~V~nLp~~--~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~ 178 (193)
T 2voo_A 113 YIKGFPTD--ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 178 (193)
T ss_dssp EEECCCTT--CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE
T ss_pred EecCCCCc--CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 56777643 2346688889999999887653 3567888999999999976544555544
No 177
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.61 E-value=31 Score=23.20 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=43.5
Q ss_pred CCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEecC----------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 32 PAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG----------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 32 ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg----------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
|+.|..-=++||++.-. -...+.++.++|| |..+.+- +.-+|-..+++.++.++.-++..+.+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~--t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 85 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDV--TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR 85 (104)
T ss_dssp CSSSCEEEEEESCCSSC--CHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE
T ss_pred CCCCCCEEEEeCCCCcC--CHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE
Confidence 33333333688887532 1355778888999 9888873 1346888999999999944555555554
No 178
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=50.25 E-value=25 Score=24.80 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=44.7
Q ss_pred CCCCccccccccC---CCCchHHHHHHHHhhCCceEEecCC-------------ccEEEecCHHHHHHHHHh-CCccccc
Q 036271 35 PKPWPIIGNLNLI---GPLPHQSLHKLSQKYGQIMQLKFGS-------------FPVVVAASAEMAKQFLQT-HDHIFAS 97 (301)
Q Consensus 35 P~~~PllGnl~~~---~~~~~~~~~~~~~~yG~i~~~~lg~-------------~~~vvi~dp~~~keil~~-~~~~f~~ 97 (301)
|...=+|.|+... ......-+.+...+||+|..+++.. .-.|-..+++.|+.++.. ++..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4455578887543 2334455666778999998887532 235667899999988875 6667777
Q ss_pred CCC
Q 036271 98 RPQ 100 (301)
Q Consensus 98 R~~ 100 (301)
|+.
T Consensus 99 R~i 101 (118)
T 3ue2_A 99 RKV 101 (118)
T ss_dssp EEC
T ss_pred cEE
Confidence 763
No 179
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=50.02 E-value=39 Score=21.58 Aligned_cols=57 Identities=14% Similarity=0.285 Sum_probs=39.9
Q ss_pred cccccccCCCCchHHHHHHHHhh----C-------CceEEecC---CccEEEecCHHHHHHHHHhCCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKY----G-------QIMQLKFG---SFPVVVAASAEMAKQFLQTHDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~y----G-------~i~~~~lg---~~~~vvi~dp~~~keil~~~~~~f~~R 98 (301)
++||++.-. ....+.++.++| | +|..+++. +.-.|-..+++.++.++.-++..+.+|
T Consensus 10 ~V~nLp~~~--t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 10 YVGNIPFGI--TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp EEESCCTTC--CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred EEeCCCCCC--CHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 678886531 235567777888 8 89888875 456788889999999993344444444
No 180
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=49.99 E-value=34 Score=23.46 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhCCceEEecCC-ccEEEecCHHHHHHHHH
Q 036271 52 HQSLHKLSQKYGQIMQLKFGS-FPVVVAASAEMAKQFLQ 89 (301)
Q Consensus 52 ~~~~~~~~~~yG~i~~~~lg~-~~~vvi~dp~~~keil~ 89 (301)
..-+.++.+.||.|.--|+.. .-.+++++++.|++++.
T Consensus 29 t~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 445777888999988888876 57788999999999997
No 181
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=49.98 E-value=30 Score=23.17 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=39.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC----------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS----------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~----------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||+..-.. ...+.++.++|| |..+.+.. .-+|...+.+.++.++.-++..+.+|.
T Consensus 23 ~V~nLp~~~t--~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 23 FLGNLPYDVT--EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp EESCCSSCCS--SSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred EEeCCCCCCC--HHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 5788865311 234677888999 98888742 346888999999999944555565554
No 182
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.84 E-value=33 Score=22.99 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=40.7
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
=++|||+.-. -...+.++..+||+|..+.+-. .-+|-..+++.++.++.+ ...+.+|+
T Consensus 18 l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~ 84 (103)
T 2cqg_A 18 LIVLGLPWKT--TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRW 84 (103)
T ss_dssp EEEESCCSSC--CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEE
T ss_pred EEEEcCCCcC--CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeE
Confidence 3788886532 2455788889999998877632 356778999999999974 44454443
No 183
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.24 E-value=58 Score=21.92 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=40.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCC-ceEEecC----------CccEEEecCHHHHHHHHHh--CC-cccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQ-IMQLKFG----------SFPVVVAASAEMAKQFLQT--HD-HIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~-i~~~~lg----------~~~~vvi~dp~~~keil~~--~~-~~f~~R~ 99 (301)
++|||+.-. -...+.++..+||+ |..+.+- +.-+|-..+++.++.++.. ++ ..+.+|+
T Consensus 12 ~V~nLp~~~--t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 12 FIGGIPKMK--KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp EEECCCTTS--CHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred EEeCCCCcC--CHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 688886531 24567788899998 8888764 2457788999999999975 22 4455554
No 184
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=48.90 E-value=23 Score=24.49 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=39.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
++||++.-. -...+.++.++||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|
T Consensus 44 ~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 44 FIYHLPQEF--TDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp EEECSCTTC--CHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 577775431 2456778889999998888742 346788999999999975 34344443
No 185
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=48.60 E-value=23 Score=23.02 Aligned_cols=57 Identities=18% Similarity=0.350 Sum_probs=38.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. ....+.++.++||+|..+.+.. .-.|-..+++ ++.++.. ++..+.+|+
T Consensus 5 ~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 5 YVGNLVYSA--TSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp EEEEECTTS--SHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred EECCCCCCC--CHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 467775421 2345677788999998888742 3467789999 8888875 444555554
No 186
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=47.75 E-value=36 Score=23.15 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=41.7
Q ss_pred cccccccC-CCCchHHHHHHHHhhCCceEEecC-CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLI-GPLPHQSLHKLSQKYGQIMQLKFG-SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~-~~~~~~~~~~~~~~yG~i~~~~lg-~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.- . -...+.++.++||+|..+.+. +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 31 ~V~nl~~~~~--t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 31 FIGNLNTALV--KKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp EECSCCCSSC--CHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCcccC--CHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 68888653 2 245678888999999888873 3456777899999999865 555555554
No 187
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.53 E-value=59 Score=21.54 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=42.8
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
-=++|||+.-. -...+.++.++||+|..+.+-. .-+|-..+++.|+.++.. ++..+.+|+
T Consensus 14 ~l~v~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 14 KLFVGGLSFDT--NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred EEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 33688886531 2455778889999998888743 346778999999999864 555566655
No 188
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=47.33 E-value=58 Score=24.96 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=40.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 32 ~V~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 32 YVGSIYYEL--GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp EEECCCTTC--CHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred EEECCCCCC--CHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 677776531 245678888999999888873 3457888999999999974 444444443
No 189
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=47.00 E-value=27 Score=26.49 Aligned_cols=58 Identities=14% Similarity=0.278 Sum_probs=41.5
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+.. .-+|-..+++.|..++..++..+.+|+
T Consensus 108 ~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~ 174 (196)
T 1l3k_A 108 FVGGIKEDT--EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 174 (196)
T ss_dssp EEECCTTTC--CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE
Confidence 577776531 2456778889999998777642 247788999999999977665665554
No 190
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=46.98 E-value=31 Score=30.67 Aligned_cols=59 Identities=10% Similarity=0.176 Sum_probs=42.3
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++|||..-. -...+.++..+||+|..+.+- +.-+|...+++.|+.++.. ++..+.+++
T Consensus 105 lfV~nL~~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 105 LFVARVNYDT--TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred EEEeCCCCCC--CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 3788886532 135677888899999888773 2467888999999999865 555555554
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=46.84 E-value=30 Score=26.15 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=41.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+.+- +.-+|...+++.|+.++..++..+.+|+
T Consensus 17 ~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 17 FIGGLSFET--TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 788887532 245678888999999877752 1457888999999999977555554443
No 192
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.64 E-value=53 Score=20.81 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=41.0
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh--CCcccccC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT--HDHIFASR 98 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~--~~~~f~~R 98 (301)
=++||++.-. -...+.++.++||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 15 l~V~~l~~~~--t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 15 LYVGGLGDTI--TETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp EEEECCTTTS--CHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred EEEcCCCCCC--CHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 3688886531 245677888999999888764 3567778899999999975 34344443
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=46.10 E-value=36 Score=24.78 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=40.5
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 6 ~v~nlp~~~--~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 6 IVNYLPQNM--TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp EEESCCTTC--CHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEcCCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 567776521 2456778889999998877632 347888999999999974 555555543
No 194
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.09 E-value=35 Score=23.29 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=41.6
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecCC--------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS--------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~--------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++|||+.-. -...+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 18 l~V~nlp~~~--~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 18 VFVANLDYKV--GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp EEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 3688887532 2456788889999998777532 356788899999999874 555555554
No 195
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.89 E-value=19 Score=24.27 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=40.7
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 19 ~V~nlp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 19 RVTNLSEDT--RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp EEESCCTTC--CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 688886531 2345777788999998887642 247888999999999975 444454443
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=45.73 E-value=42 Score=26.10 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=43.4
Q ss_pred ccccccc-c-CCCCchHHHHHHHHhhCCceEEecC----CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLN-L-IGPLPHQSLHKLSQKYGQIMQLKFG----SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~-~-~~~~~~~~~~~~~~~yG~i~~~~lg----~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++|||. . +. ...+.++..+||+|..+++- +.-.|-..|++.|+.++.. ++..+.+|+
T Consensus 7 l~V~nL~~~~~~---~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 7 LMVYGLDQSKMN---CDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp EEEECCCTTTCC---HHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCcccCC---HHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 3688987 4 32 34677888999999998864 4578888999999999874 555565554
No 197
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.59 E-value=57 Score=21.54 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=42.4
Q ss_pred ccccccccCCCCchHHHHHHHHhh--CCceEEecC-CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKY--GQIMQLKFG-SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~y--G~i~~~~lg-~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++||++.-. -...+.++..+| |.|..+.+- +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 18 l~V~nLp~~~--t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 18 LYVRNLMLST--SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp EEEESCCTTC--CHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3688886531 245678888999 888888764 4667888999999999874 555555553
No 198
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.49 E-value=61 Score=22.32 Aligned_cols=63 Identities=13% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCCccccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh-C--CcccccCCC
Q 036271 36 KPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT-H--DHIFASRPQ 100 (301)
Q Consensus 36 ~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~-~--~~~f~~R~~ 100 (301)
...=++|||+.-. -...+.++.++||.|..+++- +.=+|-..+++.|+.++.. + +..+.+|+.
T Consensus 16 ~~~LfV~nLp~~v--te~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 16 SRVIHIRKLPIDV--TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp CCEEEECSCCTTS--CHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3334789987631 235577888999999988864 3468888999999999873 2 235556653
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.20 E-value=65 Score=21.84 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=35.9
Q ss_pred hHHHHHHHHhhCCceEEecC----CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 52 HQSLHKLSQKYGQIMQLKFG----SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 52 ~~~~~~~~~~yG~i~~~~lg----~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
...+.++..+||+|..+++. +.-+|...+++.|+.++.. ...+.+|+
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~ 81 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVGLVDNP 81 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCBCSSSB
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCCCCCCe
Confidence 46688889999999988874 2457888999999999976 34455554
No 200
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=44.85 E-value=75 Score=22.02 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=40.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||+..-. -...+.++.++||+|..+.+- +.-+|-..+.+.++.++.. ++..+.+|+
T Consensus 39 ~V~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 39 LVSNLDFGV--SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp EEESCCSSC--CHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 577776531 235577888999999888763 2457788999999999874 555555554
No 201
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.84 E-value=50 Score=21.60 Aligned_cols=58 Identities=10% Similarity=0.199 Sum_probs=40.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC----ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS----FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~----~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. -...+.++..+||+|..+..-. .-+|-..+++.++.++.-++..+.+|+
T Consensus 12 ~V~nl~~~~--t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 12 FVSGFPRGV--DSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp EEECCCTTC--CHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred EEECCCCCC--CHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 678886532 2456778889999988774322 345677899999999985555566654
No 202
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=44.53 E-value=77 Score=23.94 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=40.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.- .-...+.++.++||+|..+.+- +.-+|...+++.|+.++.. ++..+.+|+
T Consensus 92 ~V~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 92 LVSNLDFG--VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp EEECCCSC--CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 45555432 1245577888899999888873 2457888999999999975 444555554
No 203
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.37 E-value=38 Score=23.10 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=40.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCce--------EEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIM--------QLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~--------~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|. .+.+-. .-+|-..+++.|+.++.. ++..+.+|+
T Consensus 19 ~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 19 YVQGLNDSV--TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp EEECCCTTC--CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEcCCCCCC--CHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 688887531 2456788889999987 355432 347888999999999975 555665554
No 204
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=42.80 E-value=39 Score=24.56 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=40.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+++- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 4 ~V~nlp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 4 YVGNLDKAI--TEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI 70 (166)
T ss_dssp EEEEEETTC--CHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EECCCCCcC--CHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe
Confidence 467776431 245677888999999888872 2467888999999999953 555555543
No 205
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=42.23 E-value=15 Score=24.78 Aligned_cols=57 Identities=11% Similarity=0.272 Sum_probs=40.1
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+- +.-.|...+++.++.++. ++..+.+++
T Consensus 13 ~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~ 77 (102)
T 2xs2_A 13 FVGGIDVRM--DETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK 77 (102)
T ss_dssp EEECCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEE
Confidence 678886531 245577888999999887763 234677889999999997 554555544
No 206
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=41.56 E-value=76 Score=21.13 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=36.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT 90 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~ 90 (301)
++||++.-. -...+.++.++||+|..+++-. .-+|-..+++.++.++..
T Consensus 17 ~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 17 FIGQIPRNL--DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp EEESCCTTC--CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 688886531 2456788889999998888743 346778899999999864
No 207
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.03 E-value=79 Score=22.45 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=39.2
Q ss_pred ccccccCCCCchHHHHHHHHhhCCceEEecC---C-ccEEEecCHHHHHHHHHh-CCccccc
Q 036271 41 IGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---S-FPVVVAASAEMAKQFLQT-HDHIFAS 97 (301)
Q Consensus 41 lGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~-~~~vvi~dp~~~keil~~-~~~~f~~ 97 (301)
+||+.+-. -...+.+...+||.|-.+++. + .-+|-..|++.|+.++.. ++..+.+
T Consensus 30 V~NL~~~v--t~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 30 IQNPLYPI--TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EESCCSCC--CHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EcCcCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 68886531 245688889999998877653 3 467888899999888875 5555544
No 208
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=40.90 E-value=37 Score=27.77 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=44.2
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC-------CccEEEecCHHHHHHHHHhCCcccccCCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG-------SFPVVVAASAEMAKQFLQTHDHIFASRPQ 100 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg-------~~~~vvi~dp~~~keil~~~~~~f~~R~~ 100 (301)
=++|||+.-. -...+.++.++||+|..+++- +.-+|...+++.|+.++..++..+.+|+.
T Consensus 44 l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 110 (292)
T 2ghp_A 44 VLVKNLPKSY--NQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEI 110 (292)
T ss_dssp EEEEEECTTC--CHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEEC
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEE
Confidence 3788887632 245678888999999887762 35678899999999999656666666653
No 209
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.35 E-value=55 Score=22.32 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=44.3
Q ss_pred CCCCCcccccccc-CCCCchHHHHHHHHhhCCceEEecCC---ccEEEecCHHHHHHHHHh---CCcccccCC
Q 036271 34 GPKPWPIIGNLNL-IGPLPHQSLHKLSQKYGQIMQLKFGS---FPVVVAASAEMAKQFLQT---HDHIFASRP 99 (301)
Q Consensus 34 gP~~~PllGnl~~-~~~~~~~~~~~~~~~yG~i~~~~lg~---~~~vvi~dp~~~keil~~---~~~~f~~R~ 99 (301)
.|...=.+|||+. -. -...+.++.+.||.|..+++-. .-+|-..+++.|+.++.. ....+.+|+
T Consensus 13 ~p~~~l~V~nLp~~~~--te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKN--LRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCEEEEESCCCSSS--HHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCEEEEeCCCCCcC--CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3444457899876 31 2345778889999999998753 458888999999998863 222355554
No 210
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.13 E-value=40 Score=22.69 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=43.2
Q ss_pred CCCCCCcccccccc-C--C-CCc---hHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 33 AGPKPWPIIGNLNL-I--G-PLP---HQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 33 pgP~~~PllGnl~~-~--~-~~~---~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
-||+.-.++=++.. - . -.+ ...+.+....||.|..+++ .+.-+|-..|.+.+..++.-++..+.+|.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCeE
Confidence 36776555555422 1 1 112 2345555667999998886 45678888999999999876665555554
No 211
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=40.11 E-value=46 Score=22.65 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=30.4
Q ss_pred HhhCCceEEecCC--------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 60 QKYGQIMQLKFGS--------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 60 ~~yG~i~~~~lg~--------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||+|..+++.. .-.|-..+++.|+.++.. ++..|.+|+
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 8999999988752 345777899999988865 666666665
No 212
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.06 E-value=25 Score=25.02 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=39.5
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCc----eEEec-----C---CccEEEecCHHHHHHHHHhCCcccccC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQI----MQLKF-----G---SFPVVVAASAEMAKQFLQTHDHIFASR 98 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i----~~~~l-----g---~~~~vvi~dp~~~keil~~~~~~f~~R 98 (301)
.=.+|||++-. -...+.++.+.||+| -.+++ | +.-+|...+++.++.++..++..+.+|
T Consensus 25 ~v~V~nLp~~~--te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR 95 (123)
T 2dha_A 25 IVRMRGLPFTA--TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 95 (123)
T ss_dssp EEEECSCCTTC--CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCe
Confidence 34688887642 145678888999975 23433 2 235788899999999998755444444
No 213
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.51 E-value=78 Score=22.28 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=43.0
Q ss_pred CCccccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh---CCcccccCCC
Q 036271 37 PWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT---HDHIFASRPQ 100 (301)
Q Consensus 37 ~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~---~~~~f~~R~~ 100 (301)
..=++|||+.-. -...+.++.++||.|..+.+- +.=+|-..+.+.|+.++.. .+..+.+|+.
T Consensus 32 ~~LfVgNLp~~v--te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 32 RVIHIRKLPIDV--TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SEEEEESCCTTC--CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 334789987631 235578888999999888864 3467888899999988763 2234556653
No 214
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=39.43 E-value=75 Score=24.02 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=42.2
Q ss_pred ccccccc-CCCCchHHHHHHHHhhCCceEEecC----CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNL-IGPLPHQSLHKLSQKYGQIMQLKFG----SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~-~~~~~~~~~~~~~~~yG~i~~~~lg----~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++. -. -...+.++.++||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 7 ~v~nlp~~~~--~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 7 LVSNLNPERV--TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp EEECCCSSSC--CHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred EEeCCCcccC--CHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 4677765 21 235677888999999988874 4568889999999999873 555565554
No 215
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=39.22 E-value=80 Score=22.75 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=39.7
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
.+||++.-. ....+.+..++||+|..+.+.. .-.|-..+++.|+.++.. ++..+.+|
T Consensus 92 ~v~nl~~~~--t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 92 YVSGLPKTM--TQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred EECCCCCcC--CHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 577776521 2456788889999998777632 236777999999999875 55455554
No 216
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.17 E-value=61 Score=22.04 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=40.5
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCc----eEEec--C---CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQI----MQLKF--G---SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i----~~~~l--g---~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
-=++||++.-. -...+.++..+||.| ..+.. | +.-+|-..+++.|+.++.. ++..+.+|+
T Consensus 27 ~l~V~nLp~~~--t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 27 VLYLKNLSPRV--TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp EEEEECCCTTC--CHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 33688886531 245577788899987 44443 2 3457888999999999975 555565554
No 217
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.57 E-value=83 Score=21.43 Aligned_cols=67 Identities=25% Similarity=0.218 Sum_probs=44.5
Q ss_pred CCCCCCccccccccCCC---Cc------hHHHHHHHHhhCCceEEecC-----CccEEEecCHHHHHHHHHh-CCccccc
Q 036271 33 AGPKPWPIIGNLNLIGP---LP------HQSLHKLSQKYGQIMQLKFG-----SFPVVVAASAEMAKQFLQT-HDHIFAS 97 (301)
Q Consensus 33 pgP~~~PllGnl~~~~~---~~------~~~~~~~~~~yG~i~~~~lg-----~~~~vvi~dp~~~keil~~-~~~~f~~ 97 (301)
|.|...-++.|+..... .+ ...+.+...+||+|..+.+- +.-+|...+++.|+.++.. ++..+.+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45555667888844311 11 23566777899999887763 3457778899999999865 5555666
Q ss_pred CC
Q 036271 98 RP 99 (301)
Q Consensus 98 R~ 99 (301)
|+
T Consensus 92 r~ 93 (112)
T 2dit_A 92 RQ 93 (112)
T ss_dssp EE
T ss_pred cE
Confidence 65
No 218
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.52 E-value=30 Score=23.84 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=40.1
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCc-eEEec-----C---CccEEEecCHHHHHHHHHhCCcccccC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQI-MQLKF-----G---SFPVVVAASAEMAKQFLQTHDHIFASR 98 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i-~~~~l-----g---~~~~vvi~dp~~~keil~~~~~~f~~R 98 (301)
=++|||+.-. -...+.++.++||.| ..+.+ | +.-+|-..+++.++.++..++..+.+|
T Consensus 18 l~V~nLp~~~--t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 18 AHITNIPFSI--TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp EEEESCCTTS--CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred EEEeCcCCcC--CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 3688887632 134577888899998 44554 2 356788899999999997755444444
No 219
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=37.45 E-value=78 Score=22.93 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=41.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+++- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 7 ~v~nlp~~~--~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 74 (168)
T 1b7f_A 7 IVNYLPQDM--TDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR 74 (168)
T ss_dssp EEECCCTTC--CHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence 577776531 245678888999999888764 2467788999999999963 454555443
No 220
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=36.63 E-value=56 Score=25.34 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=41.2
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
=++|||+.-. -...+.++.++||+|..+++- +.-.|-..+++.++.++.. ++..+.+|
T Consensus 18 lfVgnLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 18 LYVGDLHPDV--TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp EEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 3789987532 145678888999999888762 1357888999999999875 44444444
No 221
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=36.32 E-value=74 Score=24.29 Aligned_cols=58 Identities=5% Similarity=0.145 Sum_probs=41.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+.. .-+|-..+++.|..++.. ++..+.+|+
T Consensus 129 ~v~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 129 YVASVHQDL--SDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp EEECCCTTC--CHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred EEeCCCCcC--CHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 567765431 2456778889999998887642 236888999999999985 555666665
No 222
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.29 E-value=61 Score=21.11 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=40.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEE-ecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQL-KFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~-~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+ ++-. .-+|-..+++.|+.++.. ++..+.+|+
T Consensus 9 ~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 9 FIGNLDPEI--DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp EEECCCTTC--CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 678886532 245678888999998766 5432 357888999999999974 444555554
No 223
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=36.14 E-value=77 Score=22.97 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=38.3
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc---------cEEEecCHHHHHHHHHh-CCcccc
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGSF---------PVVVAASAEMAKQFLQT-HDHIFA 96 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~~---------~~vvi~dp~~~keil~~-~~~~f~ 96 (301)
.+||++.- .....+.++.++||+|..+.+... -.|-..+++.|..++.. ++..+.
T Consensus 93 ~v~nl~~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 93 YVTNLPRT--ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp EEESCCTT--CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred EEeCCCCC--CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 67777653 124567788899999988776332 36777999999999874 444443
No 224
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=36.08 E-value=45 Score=22.61 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=40.2
Q ss_pred ccccccccCCCCchHHHHHHHHhhCC---ceEEecC--------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQ---IMQLKFG--------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~---i~~~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
=++|||+.-.. ...+.++.+.||. |..+++- +.-+|-..+++.++.++..++..+.+|+
T Consensus 14 l~V~nLp~~~t--e~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 14 IRAQGLPWSCT--MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp EEEECCCSSCC--SHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred EEEeCCCCCCC--HHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 36889876421 3457777888887 7666653 2457888999999999985554444443
No 225
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.02 E-value=46 Score=22.25 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=42.7
Q ss_pred CCCCCCCccccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 32 PAGPKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 32 ppgP~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
|+.|..-=++|||+.-. -...+.++.++|| |..+++-. .-+|-..+++.++.++.-++..+.+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~--t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNT--VQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp CSSSCEEEEEESCCTTC--CHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCCeEEEEeCCCCCC--CHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 33343344789987532 1355777888897 87777631 346888999999999944555555554
No 226
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.60 E-value=52 Score=22.34 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=43.7
Q ss_pred CCCCCCcccccccc--------CCCCchHHHHHHHHhhCCceEEec-CCccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 33 AGPKPWPIIGNLNL--------IGPLPHQSLHKLSQKYGQIMQLKF-GSFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 33 pgP~~~PllGnl~~--------~~~~~~~~~~~~~~~yG~i~~~~l-g~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
-|||.-.++=++.. +.......+.+....||.|..+++ ..+-+|...|.+.|..++.-++..+.+|.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 47776666555421 111112335555667999888885 56788888999999999976665555553
No 227
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=35.40 E-value=18 Score=24.87 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=31.7
Q ss_pred hHHHHHHHHhhCCceEEecCC-ccEEEecCHHHHHHHHHh
Q 036271 52 HQSLHKLSQKYGQIMQLKFGS-FPVVVAASAEMAKQFLQT 90 (301)
Q Consensus 52 ~~~~~~~~~~yG~i~~~~lg~-~~~vvi~dp~~~keil~~ 90 (301)
..-+.++.+.||.|.--|+.. .-.+++++|+.|++++..
T Consensus 19 t~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 345677788899888888876 577889999999999974
No 228
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.30 E-value=64 Score=22.48 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=43.6
Q ss_pred CCCccccccccC-CCCchHHHHHHHHhhCCceEEecCC---ccEEEecCHHHHHHHHHh---CCcccccCCC
Q 036271 36 KPWPIIGNLNLI-GPLPHQSLHKLSQKYGQIMQLKFGS---FPVVVAASAEMAKQFLQT---HDHIFASRPQ 100 (301)
Q Consensus 36 ~~~PllGnl~~~-~~~~~~~~~~~~~~yG~i~~~~lg~---~~~vvi~dp~~~keil~~---~~~~f~~R~~ 100 (301)
...=++|||+.- . -...+.++.++||.|..+++.. .-+|-..+.+.|+.++.. ....+.+|+.
T Consensus 25 ~~~l~V~NLp~~~~--te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 25 GRVIHLSNLPHSGY--SDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp CCEEEEESCCCSSC--CSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCEEEEeCCCCccC--CHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 334478998762 2 1345778889999999998863 457888899999988863 3334566653
No 229
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.12 E-value=92 Score=20.21 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=41.1
Q ss_pred ccccccccCCCCchHHHHHHHHhhCCceEEe-cCC-----ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLIGPLPHQSLHKLSQKYGQIMQLK-FGS-----FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~-lg~-----~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++||++.-. -...+.++.++||+|..+. +-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 18 l~V~nlp~~~--t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 18 LQIRNIPPHL--QWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp EEEEEECSSS--CHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEcCCCCC--CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3789987632 2456788889999998873 432 256788999999999874 554555554
No 230
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.67 E-value=1e+02 Score=20.63 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=41.5
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++|||+.-. -...+.++.++||+|..+++-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 26 ~V~nLp~~~--t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 26 YVGNLPPDI--RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 688886531 2456788889999998877632 347888999999999854 444555554
No 231
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.61 E-value=1e+02 Score=20.61 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=38.1
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecC---------CccEEEecCHHHHHHHHHh
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---------SFPVVVAASAEMAKQFLQT 90 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---------~~~~vvi~dp~~~keil~~ 90 (301)
-=++|||+.-. -...+.++..+||+|..+.+- +.-+|-..+++.++.++..
T Consensus 17 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 17 TVFIRNLSFDS--EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 34788887632 245577888999999888874 2346778899999999975
No 232
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=34.54 E-value=54 Score=26.08 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=39.6
Q ss_pred cccccccCCCCchHHHHHHHHhhC--CceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYG--QIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG--~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
++|||..-. -...+.++.++|| .|..+.+-. .-+|...+.+.++.++.. ++..+.+|
T Consensus 72 fVgnL~~~~--te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 72 YIGNLTWWT--TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp EEESCCTTC--CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred EEeCCCCCC--CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 677776532 1356788889999 898887632 247888999999999974 33444444
No 233
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.30 E-value=74 Score=21.60 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=39.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC--------ccEEEecCHHHHHHHHHh-CCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS--------FPVVVAASAEMAKQFLQT-HDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~--------~~~vvi~dp~~~keil~~-~~~~f~~R 98 (301)
++||++.-. -...+.++.++||+|..+++-. .-+|-..+++.++.++.. ++..+..+
T Consensus 29 ~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 29 YISNLPLSM--DEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp EEESCCTTC--CHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 688886531 2355778888999998877632 356778899999999874 44444333
No 234
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=33.50 E-value=72 Score=24.68 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=40.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC-------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS-------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~-------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||+..-. -...+.++.++||+|..+.+-. .-+|-..+++.|+.++.+ ++..+.+|+
T Consensus 107 ~v~nl~~~~--t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 107 FIKNLDKSI--DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred eECCccccc--HHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 577776531 2456788889999998877631 247888999999999975 555555543
No 235
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=32.93 E-value=77 Score=22.96 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=36.7
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT 90 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~ 90 (301)
++||++.-. -...+.++.++||+|..+++-. .-.|-..+++.++.++.+
T Consensus 7 ~v~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 7 FIGGLNWDT--TEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp EECSCCTTC--CHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred EEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 567776521 2456788889999999888642 357888999999999974
No 236
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.24 E-value=56 Score=20.97 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=35.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC----CccEEEecCHHHHHHHH
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG----SFPVVVAASAEMAKQFL 88 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg----~~~~vvi~dp~~~keil 88 (301)
++||++.-. -...+.++.++||+|..+++- +.-+|-..+++.++.+.
T Consensus 9 ~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 9 FVGRCTGDM--TEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEESCCSSS--CHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEeCCCCCC--CHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 678886531 235677888999999988874 35688889999998653
No 237
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.87 E-value=1.3e+02 Score=21.03 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=36.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT 90 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~ 90 (301)
++||++.-. -...+.++.++||+|..+.+-. .-+|-..+++.++.++..
T Consensus 67 ~v~nlp~~~--~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 67 YVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEECCCTTC--CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCCC--CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 577775431 2356788889999999888732 347888999999999965
No 238
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=31.84 E-value=77 Score=23.10 Aligned_cols=60 Identities=10% Similarity=0.177 Sum_probs=41.0
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
--++||++.-. -...+.+..++||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 96 ~l~v~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 96 KLFIGGLPNYL--NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp CEEEECCCTTC--CHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred EEEEEcCCCcC--CHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 33678886531 2456778888999998877632 246777899999999875 555554443
No 239
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=31.65 E-value=56 Score=21.38 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=38.4
Q ss_pred cccccccCCCCchHHHHHHHHhhC-CceEEecCC---------ccEEEecCHHHHHHHHHhCC--cccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYG-QIMQLKFGS---------FPVVVAASAEMAKQFLQTHD--HIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG-~i~~~~lg~---------~~~vvi~dp~~~keil~~~~--~~f~~R~ 99 (301)
++|||+.-. -...+.++.++|| +|-.+++.. .-.|-..+++.|+.++.... ..+.+|+
T Consensus 5 ~v~nLp~~~--te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 5 MLRMLPQAA--TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp EEETCCSSC--CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 467776531 1356778889999 687777631 24688899999999996432 2344554
No 240
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.51 E-value=42 Score=22.68 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=40.5
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHhCCcccccCCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQTHDHIFASRPQ 100 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R~~ 100 (301)
++|||+.-.. ...+.++.+.||.+ .+++- +.-+|...+++.++.++..++..+.+|+.
T Consensus 19 ~V~nLp~~~t--e~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 19 HMRGLPYRAT--ENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp EEESCCTTCC--HHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred EEeCCCCCCC--HHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 6788876321 35577788889965 66652 13567889999999999766666767753
No 241
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=31.46 E-value=1.2e+02 Score=20.52 Aligned_cols=54 Identities=17% Similarity=-0.013 Sum_probs=40.1
Q ss_pred CCCCccccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh
Q 036271 35 PKPWPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT 90 (301)
Q Consensus 35 P~~~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~ 90 (301)
|...=.+||++.-. -...+.++..+||+|..+.+. +.-+|-..+.+.|+.++..
T Consensus 20 ps~~l~V~NLp~~~--te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDGV--VEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCC--CHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 44455789997531 135578888999999888763 4678888899999999864
No 242
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.83 E-value=1.2e+02 Score=20.45 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=41.9
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh---CCcccccCC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT---HDHIFASRP 99 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~---~~~~f~~R~ 99 (301)
.=++|||+.-. -...+.++.++||.|..+.+- +.-+|-..+.+.|+.++.. ++..+.+|+
T Consensus 17 ~l~V~nLp~~~--te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 17 VLHIRKLPGEV--TETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp EEEEESCCTTC--CHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 44789987521 235577888999999888764 3467888899999988863 333455554
No 243
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=30.02 E-value=29 Score=20.24 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=14.5
Q ss_pred CCccccccccCCCCchHHHHHHHHhhC
Q 036271 37 PWPIIGNLNLIGPLPHQSLHKLSQKYG 63 (301)
Q Consensus 37 ~~PllGnl~~~~~~~~~~~~~~~~~yG 63 (301)
..|++||+..-..........++|-+|
T Consensus 30 ~ipilgn~fs~pawisa~~~~~~k~~g 56 (57)
T 1b35_D 30 HIPVLGNIFSTPAWISAKAADLAKLFG 56 (57)
T ss_dssp CCCCSCCSSSSCTTCCCCHHHHHHHTT
T ss_pred ccccccccccchHHHHHHHHHHHHHhC
Confidence 479999986542222223444555444
No 244
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=28.87 E-value=1e+02 Score=24.70 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=42.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.++ +.-.|-..+++.|+.++.. ++..+.+|+
T Consensus 26 ~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 26 FVGNLPTDI--TEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp EEESCCTTC--CHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCCC--CHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 688886531 135677788999999998886 3567888999999999874 555555554
No 245
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.87 E-value=31 Score=24.05 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=39.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCC---ceEEecC--------CccEEEecCHHHHHHHHHhCCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQ---IMQLKFG--------SFPVVVAASAEMAKQFLQTHDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~---i~~~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R 98 (301)
++|||+.-.. ...+.++.+.||. |..+++- +.-+|-..+++.++.++..++..+.+|
T Consensus 21 ~V~nLp~~~t--e~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 88 (118)
T 2db1_A 21 KLRGLPWSCS--IEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHR 88 (118)
T ss_dssp EEESCCTTCC--HHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTE
T ss_pred EEeCCCCCCC--HHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 6888876421 3457788888998 6655542 245788899999999998655444444
No 246
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=28.54 E-value=81 Score=22.83 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=41.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHhCCcccccCCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQTHDHIFASRPQ 100 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R~~ 100 (301)
++|||+.-. -...+.++.++|| +..+++- +.-+|...+++.++.++..++..+.+|+.
T Consensus 50 fV~nLp~~~--te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i 115 (139)
T 2hgn_A 50 HMRGLPYKA--TENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 115 (139)
T ss_dssp ECCSCCTTC--CHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEE
Confidence 688887632 1456788889999 5577763 24678889999999999656666767753
No 247
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.64 E-value=87 Score=21.47 Aligned_cols=57 Identities=7% Similarity=0.058 Sum_probs=39.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG--------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++|||++-. -...+.++.+.| .|..+++. +.-+|-..+++.++.++..++..+.+|+
T Consensus 20 ~V~nLp~~~--te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 84 (109)
T 2dnn_A 20 SVHGMPFSA--MENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRY 84 (109)
T ss_dssp EEECCCSSC--CHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 678887632 134577777888 67777663 2468889999999999966665665554
No 248
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=27.63 E-value=35 Score=22.33 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=37.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEec------C---CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKF------G---SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~l------g---~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++||+|..+.+ | +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 19 ~V~nlp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 19 KVQNMPFTV--SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp EEECCCTTC--CHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 678886531 23557778889998643222 1 2356778899999999975 555555554
No 249
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.82 E-value=1.6e+02 Score=20.45 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=40.7
Q ss_pred CCCCccc--cccccCCCCchHHHHHHHHhhCCceEEecCC---ccEEEecCHHHHHHHHHh-CCc
Q 036271 35 PKPWPII--GNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---FPVVVAASAEMAKQFLQT-HDH 93 (301)
Q Consensus 35 P~~~Pll--Gnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---~~~vvi~dp~~~keil~~-~~~ 93 (301)
|...=++ ||+..-. -...+.+..++||.|-.+++.. --+|-..+++.|++++.. ++.
T Consensus 24 pt~~L~V~Ng~L~~~~--te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGV--SRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp CCSEEEEETCTGGGTC--CHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCCC--CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3333477 7786531 2456888889999999888753 456788899999999875 443
No 250
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=26.75 E-value=1.1e+02 Score=22.12 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=36.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC--------ccEEEecCHHHHHHHHHh
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS--------FPVVVAASAEMAKQFLQT 90 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~--------~~~vvi~dp~~~keil~~ 90 (301)
++||++.-. ....+.++.++||+|..+.+-. .-.|-..+++.|+.++..
T Consensus 99 ~v~nl~~~~--t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 99 FIGMISKKC--TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEcCCCCcC--CHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 567775431 2456778889999998877632 257888999999999865
No 251
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=26.34 E-value=1.1e+02 Score=21.69 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=40.1
Q ss_pred cccccccCCCCchHHHHHHHHhhCCce--EEecC--------CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIM--QLKFG--------SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~--~~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++|||++-.. ...+.++.+.| .|. .+.+. +.-+|...+++.++.++...+..+.+|+
T Consensus 46 fVgnLp~~~t--e~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~ 112 (126)
T 2hgm_A 46 RLRGLPFGCT--KEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 112 (126)
T ss_dssp EEECCCTTCC--HHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC
T ss_pred EEeCCCCCCC--HHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEE
Confidence 6888876421 34577777888 566 66653 3457889999999999987655666665
No 252
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.27 E-value=1.5e+02 Score=19.94 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=41.9
Q ss_pred CccccccccCCCCchHHHHHHHHhhCCceEEecC---CccEEEecCHHHHHHHHHh---CCcccccCC
Q 036271 38 WPIIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFG---SFPVVVAASAEMAKQFLQT---HDHIFASRP 99 (301)
Q Consensus 38 ~PllGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg---~~~~vvi~dp~~~keil~~---~~~~f~~R~ 99 (301)
.=++|||+.-. -...+.++.++||.|..+.+- +.=+|-..+.+.|+.++.. +...+.+|+
T Consensus 17 ~l~V~nLp~~~--te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 17 VVHVRGLCESV--VEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp EEEEESCCSSC--CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34789987531 245678888999999888864 3467888899999988863 222355554
No 253
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=25.76 E-value=1.8e+02 Score=23.37 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=30.7
Q ss_pred hHHHHHHHHhhCCceEEecC----CccEEEecCHHHHHHHHHh
Q 036271 52 HQSLHKLSQKYGQIMQLKFG----SFPVVVAASAEMAKQFLQT 90 (301)
Q Consensus 52 ~~~~~~~~~~yG~i~~~~lg----~~~~vvi~dp~~~keil~~ 90 (301)
...+.++.++||+|..+.+- +.-+|-..+.+.+..++..
T Consensus 221 ~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 221 ELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred HHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHH
Confidence 35677888899999888874 2467777899999999875
No 254
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=23.06 E-value=1.1e+02 Score=22.85 Aligned_cols=58 Identities=10% Similarity=0.217 Sum_probs=39.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------ccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQLKFGS---------FPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~~~lg~---------~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
++||++.-. ....+.++.++||+|..+.+.. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 118 ~v~nl~~~~--~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 118 FIGGLPNYL--NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp EEECCCTTC--CHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCCC--CHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 566665421 2456778889999998877642 246778899999999875 555555544
No 255
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=22.56 E-value=1.4e+02 Score=21.60 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=38.8
Q ss_pred cccccccCCCCchHHHHHHHHhh----C-------CceEEecC---CccEEEecCHHHHHHHHHhCCcccccCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKY----G-------QIMQLKFG---SFPVVVAASAEMAKQFLQTHDHIFASRP 99 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~y----G-------~i~~~~lg---~~~~vvi~dp~~~keil~~~~~~f~~R~ 99 (301)
++||++.-. -...+.++.++| | +|..++++ +.-.|-..+++.|+.++.-++..+.+|+
T Consensus 8 ~V~nLp~~~--t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 8 YVGNIPFGI--TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp EEESCCTTC--CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred EEcCCCccc--CHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 577776531 134455666666 7 78877775 4567888999999999954555555554
No 256
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=22.46 E-value=1.6e+02 Score=20.56 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=36.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceE--EecC---------CccEEEecCHHHHHHHHHh-CCc----ccccCCC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIMQ--LKFG---------SFPVVVAASAEMAKQFLQT-HDH----IFASRPQ 100 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~~--~~lg---------~~~~vvi~dp~~~keil~~-~~~----~f~~R~~ 100 (301)
++|||+.-.. ...+.++.++||.|-. +++- +.-+|-..++ .++.++.. ++. .+.+|+.
T Consensus 27 fV~nL~~~~t--e~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 27 ILRNLNPHST--MDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp EECSCCTTCC--SHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred EEeCCCCCCC--HHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 7888866321 3567788899999844 5542 2346777788 77766654 444 5556653
No 257
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=22.25 E-value=94 Score=20.63 Aligned_cols=49 Identities=24% Similarity=0.267 Sum_probs=34.5
Q ss_pred cccccccCCCCchHHHHHHHHhhCC--ceEEecCC---------ccEEEecCHHHHHHHHHh
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQ--IMQLKFGS---------FPVVVAASAEMAKQFLQT 90 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~--i~~~~lg~---------~~~vvi~dp~~~keil~~ 90 (301)
++|||+.-. -...+.+..++||+ +..+++.. .-.|-..+++.++.++..
T Consensus 13 fV~nL~~~~--tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 13 ILRNIAPHT--VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI 72 (95)
T ss_dssp EEESCCTTC--CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH
T ss_pred EEeCCCCcC--CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH
Confidence 678886532 24567888899995 55666531 247888999999999864
No 258
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.16 E-value=57 Score=22.73 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=37.1
Q ss_pred cccccccCCCCchHHHHHHHHhhCCce---EEec---C---CccEEEecCHHHHHHHHHhCCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQIM---QLKF---G---SFPVVVAASAEMAKQFLQTHDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~i~---~~~l---g---~~~~vvi~dp~~~keil~~~~~~f~~R 98 (301)
++|||+.-.. ...+.++.+.||+|. .+.. | +.-+|...+++.++.++..++..+.+|
T Consensus 29 ~V~nLp~~~t--e~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 94 (124)
T 1wel_A 29 YLKGLPFEAE--NKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNR 94 (124)
T ss_dssp EEECCCTTCC--HHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTS
T ss_pred EEeCCCCCCC--HHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCc
Confidence 6888876321 345777888999863 2221 2 245788899999999997554444444
No 259
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=21.94 E-value=1.5e+02 Score=23.82 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=41.4
Q ss_pred ccccccccC-CC-CchHHHHHHHHhhCCceEEecC------CccEEEecCHHHHHHHHHh-CCcccccCC
Q 036271 39 PIIGNLNLI-GP-LPHQSLHKLSQKYGQIMQLKFG------SFPVVVAASAEMAKQFLQT-HDHIFASRP 99 (301)
Q Consensus 39 PllGnl~~~-~~-~~~~~~~~~~~~yG~i~~~~lg------~~~~vvi~dp~~~keil~~-~~~~f~~R~ 99 (301)
=++|||..- .. .....+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 12 l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 378898763 21 1112355788999999888753 3567888999999999854 454555554
No 260
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=21.14 E-value=64 Score=23.28 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=38.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCC---ceEEecC--------CccEEEecCHHHHHHHHHhCCcccccC
Q 036271 40 IIGNLNLIGPLPHQSLHKLSQKYGQ---IMQLKFG--------SFPVVVAASAEMAKQFLQTHDHIFASR 98 (301)
Q Consensus 40 llGnl~~~~~~~~~~~~~~~~~yG~---i~~~~lg--------~~~~vvi~dp~~~keil~~~~~~f~~R 98 (301)
++|||++-.. ...+.++.+.||. |..+++- +.-.|...+++.++.++..++..+.+|
T Consensus 48 fVgnLp~~~t--e~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr 115 (136)
T 2hgl_A 48 KLRGLPWSCS--VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHR 115 (136)
T ss_dssp EEESCCTTCC--HHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSS
T ss_pred EEeCCCCCCC--HHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCE
Confidence 6888876421 3557788889998 5555442 245788899999999997444445444
Done!