BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036272
         (383 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytoplasmic OS=Caenorhabditis elegans GN=dhc-1
            PE=3 SV=1
          Length = 4568

 Score = 33.5 bits (75), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 19/190 (10%)

Query: 19   NWGPQGQGGAGYAGGLVAPKLAKLDFPCYDGSEDPTLWICRAEQFFEFQGTSLENQVKL- 77
            N  P+GQ     A   V   ++ L+    +     +LW+ +AEQ FE  GTSL   +K  
Sbjct: 991  NVMPEGQACLEKAYDCVNGIMSDLEEYLSEWLSYQSLWVLQAEQLFEMLGTSLSKWMKTL 1050

Query: 78   -------AAYHLENDAQLWFQQ-----RKNQGHLVTWDGLKAGLLAKFAATEYEDSFGDL 125
                     +  ++  ++ F       +  Q  L  +D     +L KF A       GD 
Sbjct: 1051 MEIRKGRLVFDTQDTRKVIFPVSVEYGKAQQKILFKYDYWHKEMLVKFGAV-----VGDE 1105

Query: 126  CKLKQTGTVSDYQPQFERLLARAGSLTDKQEAACFISGLKDGLRADVRAQNPQNLSAAIG 185
             + K   +VS ++   E      GS +D      F+  LK   ++   A +    S  + 
Sbjct: 1106 MQ-KFFNSVSKWRNVLETQSVDGGSTSDTIGLISFVQSLKKQTKSGQDAVDLYRSSQRLL 1164

Query: 186  LARNYELKAQ 195
              + Y+  AQ
Sbjct: 1165 NQQRYQFPAQ 1174


>sp|P25464|ACVS_ACRCH N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase
            OS=Acremonium chrysogenum GN=PCBAB PE=1 SV=1
          Length = 3712

 Score = 32.7 bits (73), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 23   QGQGGAGYAGGLVAPKLAKLDFPCYDGSEDPTLWICRAEQFFEFQGTSLENQVKLAAYHL 82
            +G+    +A     P+L  LD   ++ +ED    +C  +  F+ +   L     +  Y  
Sbjct: 3113 EGRHVQTFARDCAQPRLTVLDRRSFEDAEDVQEALCEIQSHFDLENGPLYTVAYIHGYE- 3171

Query: 83   ENDAQLWFQQRKNQGHLVTWDGLKAGLLAKFAATEYEDSFGDLCKLKQ--TGTVSDYQ-P 139
            +  A++WF         V+W+     +L    A  + DS G      Q  +  VSDY+ P
Sbjct: 3172 DGSARVWFACHHVMVDTVSWN----IILQDLQALYHGDSLGPKSSSVQQWSLAVSDYKMP 3227

Query: 140  QFER 143
              ER
Sbjct: 3228 LSER 3231


>sp|B1M6P5|SYFA_METRJ Phenylalanine--tRNA ligase alpha subunit OS=Methylobacterium
           radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
           GN=pheS PE=3 SV=1
          Length = 360

 Score = 31.6 bits (70), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 103/258 (39%), Gaps = 65/258 (25%)

Query: 99  LVTWDGLKAGLLAKFAATEYEDSFG--DLCKLKQTGTVSDYQPQFERLLARAGSLT--DK 154
           +   D L+  LLA+  A   E +     +  L + G+VSD       LL   GS+T  ++
Sbjct: 1   MTDLDTLERDLLAQVGAASDEAALDAVRVAALGKKGSVSD-------LLKTLGSMTPEER 53

Query: 155 QEAACFISGLKDGLRADVRAQNPQNLSAAIGLARNYE--------LKAQEIRRSVNPTFS 206
           +E    I+GL+D ++  V A+  +   AA+      E         +A E+R  ++P   
Sbjct: 54  KERGPLINGLRDRVQGAVTARKTELAEAALEARLASERVDVTLPVREAPEVRGRIHPI-- 111

Query: 207 SSVRNSSNQWNSSLTPSGSKTINLEMIFPIRNLTPIELQRRREQELCYSCDENYTVGHKC 266
                  +Q    +T      I  +M F +     IE       EL ++   N+  GH  
Sbjct: 112 -------SQVIDEIT-----AIFADMGFAVAEGPDIE-----TDELNFTA-LNFPPGHPA 153

Query: 267 KKL---FFIEIDEEGEEATGEMYTEETPVISLHALAGIQTPHTMRVHSQISKIPLTILI- 322
           +++   FF+  D +G+      +T    V ++ A    QTP            P+ ++I 
Sbjct: 154 REMHDTFFLAPDRDGKRKVLRTHTSPVQVRTMRA----QTP------------PIRVIIP 197

Query: 323 ------DSGSTHNYLHHR 334
                 DS  TH  + H+
Sbjct: 198 GRTYRHDSDQTHTPMFHQ 215


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,160,342
Number of Sequences: 539616
Number of extensions: 6008909
Number of successful extensions: 15424
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15423
Number of HSP's gapped (non-prelim): 7
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)