Query 036272
Match_columns 383
No_of_seqs 151 out of 1710
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 19:03:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 99.0 9.1E-10 3.1E-14 87.1 7.1 75 304-378 22-96 (148)
2 2i1a_A DNA damage-inducible pr 98.7 2.1E-08 7.3E-13 79.9 7.7 74 304-378 24-98 (148)
3 1fmb_A EIAV protease; hydrolas 98.5 3.3E-07 1.1E-11 67.1 7.6 71 305-378 7-77 (104)
4 1dsq_A Nucleic acid binding pr 98.4 5.1E-08 1.7E-12 52.1 1.2 20 251-270 3-22 (26)
5 1nc8_A Nucleocapsid protein; H 98.4 8.6E-08 3E-12 52.7 1.2 22 249-270 5-26 (29)
6 1a6b_B Momulv, zinc finger pro 98.3 1.2E-07 4.1E-12 55.8 1.3 22 250-271 10-31 (40)
7 1u6p_A GAG polyprotein; MLV, A 98.1 5.4E-07 1.8E-11 57.4 1.2 22 250-271 23-44 (56)
8 3ec0_A Protease; HIV-2, inhibi 98.0 1.8E-05 6.1E-10 56.9 6.8 65 306-378 8-72 (99)
9 2hs1_A HIV-1 protease; ultra-h 97.9 4.7E-05 1.6E-09 54.9 7.5 64 306-377 8-71 (99)
10 2ysa_A Retinoblastoma-binding 97.7 8.6E-06 2.9E-10 51.6 1.6 18 251-268 8-25 (55)
11 3slz_A GAG-Pro-POL polyprotein 97.7 3.4E-05 1.2E-09 58.8 4.4 68 303-378 19-86 (132)
12 2hah_A Protease, retropepsin; 97.5 0.00011 3.8E-09 54.6 4.9 65 306-376 14-79 (116)
13 2a51_A Nucleocapsid protein; s 97.5 3.1E-05 1E-09 45.8 1.5 18 251-268 22-39 (39)
14 2ec7_A GAG polyprotein (PR55GA 97.5 2.2E-05 7.7E-10 49.0 0.6 19 251-269 7-25 (49)
15 2bl6_A Nucleocapsid protein P1 97.5 3.7E-05 1.3E-09 44.8 1.4 16 253-268 3-18 (37)
16 2a51_A Nucleocapsid protein; s 97.5 2.9E-05 9.8E-10 45.9 0.9 18 252-269 2-19 (39)
17 2bl6_A Nucleocapsid protein P1 97.4 3.7E-05 1.3E-09 44.8 1.2 18 251-268 20-37 (37)
18 3nyb_B Protein AIR2; polya RNA 97.4 4.1E-05 1.4E-09 53.4 1.5 23 249-271 45-67 (83)
19 1a1t_A Nucleocapsid protein; s 97.3 9.4E-05 3.2E-09 47.5 1.8 21 249-269 11-31 (55)
20 2ec7_A GAG polyprotein (PR55GA 97.2 8.7E-05 3E-09 46.2 1.4 19 251-269 28-46 (49)
21 2ihx_A Nucleocapsid (NC) prote 97.2 8.7E-05 3E-09 48.7 1.2 18 251-268 5-22 (61)
22 3ka2_A [L-Ala51;Gly51']HIV-1 p 97.2 0.00084 2.9E-08 54.9 7.1 65 306-378 8-72 (203)
23 2ihx_A Nucleocapsid (NC) prote 97.2 0.00011 3.7E-09 48.2 1.2 21 251-271 31-51 (61)
24 1cl4_A Protein (GAG polyprotei 97.1 0.00013 4.5E-09 47.7 1.4 20 250-269 30-49 (60)
25 1a1t_A Nucleocapsid protein; s 97.1 0.00013 4.6E-09 46.7 1.2 19 251-269 34-52 (55)
26 1cl4_A Protein (GAG polyprotei 97.1 8.1E-05 2.8E-09 48.7 0.0 20 251-270 2-21 (60)
27 2cqf_A RNA-binding protein LIN 97.0 0.00021 7.1E-09 47.2 1.4 20 250-269 29-48 (63)
28 2cqf_A RNA-binding protein LIN 96.9 0.00025 8.4E-09 46.8 1.4 19 251-269 8-26 (63)
29 2li8_A Protein LIN-28 homolog 96.9 0.00029 9.8E-09 48.0 1.2 18 251-268 25-42 (74)
30 2li8_A Protein LIN-28 homolog 96.8 0.00035 1.2E-08 47.5 1.5 20 250-269 46-65 (74)
31 3liy_A Protease; hydrolase, hy 96.7 0.004 1.4E-07 45.4 6.3 63 306-374 10-78 (116)
32 3ka2_A [L-Ala51;Gly51']HIV-1 p 96.7 0.0058 2E-07 50.0 7.9 64 306-377 112-175 (203)
33 2rsp_A RSV protease; hydrolase 96.6 0.0019 6.5E-08 48.4 4.2 58 313-375 27-87 (124)
34 3ts2_A Protein LIN-28 homolog 96.5 0.0008 2.7E-08 52.8 1.6 18 251-268 98-115 (148)
35 3nyb_B Protein AIR2; polya RNA 96.5 0.00084 2.9E-08 46.7 1.3 20 250-269 5-24 (83)
36 3sqf_A Protease; folded monome 96.4 0.0024 8.1E-08 47.0 3.3 53 306-363 9-63 (114)
37 3ts2_A Protein LIN-28 homolog 96.2 0.0014 4.8E-08 51.4 1.4 20 250-269 119-138 (148)
38 2lli_A Protein AIR2; RNA surve 96.1 0.0015 5.2E-08 49.7 1.3 20 249-268 104-123 (124)
39 2lli_A Protein AIR2; RNA surve 94.6 0.01 3.6E-07 45.0 1.3 18 251-268 23-41 (124)
40 3lhr_A Zinc finger protein 24; 91.6 2.1 7.2E-05 30.1 9.2 72 122-193 9-90 (93)
41 2jys_A Protease/reverse transc 89.3 0.83 2.9E-05 31.6 5.3 62 309-377 10-71 (107)
42 2fi2_A Zinc finger protein 42; 85.2 1.9 6.6E-05 30.1 5.3 61 131-191 21-89 (94)
43 1y7q_A AW-1, zinc finger prote 84.8 2.7 9.3E-05 29.6 6.0 69 123-191 13-91 (98)
44 4e6s_A Zinc finger and SCAN do 84.5 4.6 0.00016 28.3 7.1 69 122-191 9-87 (93)
45 2jyl_A Capsid protein P24 (Ca) 81.0 4.1 0.00014 29.3 5.9 64 124-187 23-92 (105)
46 1eoq_A GAG polyprotein capsid 80.9 8 0.00027 27.0 7.0 64 127-191 2-73 (96)
47 1lya_A Cathepsin D; lysosomal 80.5 1.6 5.3E-05 31.1 3.6 28 306-333 14-43 (97)
48 3g1g_A GAG polyprotein, capsid 77.4 7.6 0.00026 26.5 5.9 67 125-191 3-76 (87)
49 3vu7_H DNA repair protein REV1 76.0 8.8 0.0003 28.6 6.6 45 40-84 25-69 (124)
50 3ds4_A HIV-1 capsid protein; H 74.9 12 0.00041 25.8 6.7 62 125-187 5-73 (86)
51 3g21_A GAG polyprotein, capsid 71.1 9.3 0.00032 25.5 5.0 62 125-187 4-73 (77)
52 1qrj_B HTLV-I capsid protein; 61.7 25 0.00085 28.5 6.9 62 125-186 118-186 (199)
53 1baj_A GAG polyprotein; capsid 61.5 19 0.00066 25.6 5.6 65 125-190 6-77 (101)
54 2hqh_E Restin; beta/BETA struc 60.0 2.1 7.2E-05 21.9 0.2 18 251-268 4-21 (26)
55 1d1d_A Protein (capsid protein 55.8 21 0.0007 30.4 5.7 62 126-187 176-247 (262)
56 4fjo_A DNA repair protein REV1 51.4 36 0.0012 23.9 5.6 41 44-84 2-42 (97)
57 1bxo_A Protein (penicillopepsi 50.9 11 0.00038 33.1 3.6 28 306-333 16-43 (323)
58 1izd_A Aspartic proteinase; su 50.3 12 0.0004 33.0 3.6 29 306-334 16-44 (323)
59 1yg9_A Aspartic protease BLA G 50.2 12 0.0004 33.1 3.6 29 306-334 18-46 (330)
60 1ibq_A Aspergillopepsin; aspar 50.1 12 0.00041 33.0 3.7 29 306-334 15-43 (325)
61 1b5f_A Protein (cardosin A); h 50.1 13 0.00043 31.2 3.6 27 306-332 14-42 (239)
62 2apr_A Rhizopuspepsin; hydrola 47.1 14 0.00049 32.4 3.7 29 306-334 16-46 (325)
63 1b5f_A Protein (cardosin A); h 46.3 14 0.00048 30.9 3.3 23 318-340 211-233 (239)
64 1eia_A EIAV capsid protein P26 45.6 45 0.0015 27.2 6.0 62 125-186 135-202 (207)
65 1wkr_A Polyporopepsin; hydrola 44.6 16 0.00056 32.3 3.7 68 306-379 13-86 (340)
66 1oew_A Endothiapepsin; hydrola 43.8 17 0.00058 32.0 3.6 29 306-334 16-46 (329)
67 3c9x_A Trichoderma reesei aspa 43.1 18 0.0006 31.9 3.6 28 306-333 16-45 (329)
68 1mpp_A Pepsin; hydrolase(acid 42.5 18 0.00063 32.3 3.7 29 306-334 19-49 (361)
69 2qzx_A Candidapepsin-5; aspart 42.2 18 0.00063 32.0 3.6 27 306-332 13-41 (342)
70 1j71_A Candidapepsin, aspartic 41.8 19 0.00065 31.8 3.6 27 306-332 13-41 (334)
71 1dpj_A Proteinase A; proteinas 40.9 20 0.00068 31.5 3.6 28 306-333 14-43 (329)
72 3fv3_A SAPP1P-secreted asparti 39.6 21 0.00073 31.5 3.6 27 306-332 13-41 (339)
73 2qp8_A Beta-secretase 1; BACE1 39.3 21 0.00073 32.3 3.6 29 306-334 22-52 (395)
74 4aa9_A Chymosin; hydrolase, as 38.3 23 0.00079 30.9 3.6 71 306-379 12-97 (320)
75 1ef4_A Subunit N, DNA-directed 38.2 10 0.00035 23.5 0.9 9 251-259 4-12 (55)
76 3cms_A Chymosin B; hydrolase, 38.0 26 0.00089 30.7 3.9 22 318-339 211-232 (323)
77 3cms_A Chymosin B; hydrolase, 37.9 24 0.00081 31.0 3.6 71 306-379 15-100 (323)
78 3aup_A SBG7S, BG, basic 7S glo 37.5 21 0.00073 32.5 3.3 20 320-339 262-281 (403)
79 3pvk_A Candidapepsin-2; hydrol 36.8 25 0.00086 31.0 3.6 27 306-332 13-41 (342)
80 2ewy_A Beta-secretase 2; BACE2 36.7 25 0.00085 31.7 3.6 28 306-333 14-43 (383)
81 1htr_B Gastricsin; aspartyl pr 36.7 25 0.00087 30.8 3.6 28 306-333 13-42 (329)
82 3aup_A SBG7S, BG, basic 7S glo 36.3 25 0.00086 32.0 3.6 29 306-334 22-52 (403)
83 1wkr_A Polyporopepsin; hydrola 36.3 28 0.00094 30.8 3.8 30 310-339 194-228 (340)
84 1am5_A Pepsin, acid proteinase 36.0 27 0.00091 30.6 3.6 28 306-333 13-42 (324)
85 3vf3_A Beta-secretase 1; struc 35.1 27 0.00093 31.7 3.6 28 306-333 29-58 (402)
86 2bju_A Plasmepsin II; aspartic 35.0 27 0.00093 32.4 3.6 29 306-334 139-169 (453)
87 1lya_B Cathepsin D; lysosomal 34.9 21 0.00071 29.7 2.6 23 317-339 120-142 (241)
88 1u7k_A GAG polyprotein; capsid 34.8 40 0.0014 25.0 3.7 43 41-85 24-66 (131)
89 4ayb_N DNA-directed RNA polyme 34.3 12 0.00042 24.1 0.8 9 251-259 5-13 (66)
90 1t6e_X Xylanase inhibitor; two 34.3 21 0.00073 32.2 2.7 20 320-339 232-251 (381)
91 1tzs_A Cathepsin E; hydrolase, 34.0 27 0.00093 31.0 3.4 71 306-379 24-109 (351)
92 3k1w_A Renin; protease, altern 33.8 30 0.001 30.5 3.6 28 306-333 19-48 (341)
93 2qzx_A Candidapepsin-5; aspart 33.2 34 0.0012 30.2 3.9 29 311-339 202-234 (342)
94 1yg9_A Aspartic protease BLA G 33.1 28 0.00096 30.6 3.2 23 318-340 214-236 (330)
95 1dpj_A Proteinase A; proteinas 33.1 35 0.0012 29.9 3.9 22 318-339 213-234 (329)
96 1mpp_A Pepsin; hydrolase(acid 32.9 35 0.0012 30.4 3.9 22 318-339 231-253 (361)
97 3pvk_A Candidapepsin-2; hydrol 32.6 35 0.0012 30.0 3.9 30 311-340 201-235 (342)
98 2x0b_A Renin; hydrolase-hormon 32.5 32 0.0011 31.1 3.6 29 306-334 62-92 (383)
99 3h47_A Ca, capsid protein P24; 32.5 67 0.0023 26.6 5.1 62 126-187 151-218 (231)
100 3qvc_A Histo-aspartic protease 32.4 31 0.0011 32.0 3.5 29 306-334 138-168 (451)
101 2apr_A Rhizopuspepsin; hydrola 32.3 65 0.0022 28.1 5.5 25 317-341 212-240 (325)
102 1tzs_A Cathepsin E; hydrolase, 32.2 36 0.0012 30.2 3.9 29 311-339 210-244 (351)
103 2ewy_A Beta-secretase 2; BACE2 32.2 24 0.00081 31.8 2.7 21 319-339 222-242 (383)
104 1miq_A Plasmepsin; aspartic pr 31.8 48 0.0017 29.7 4.7 29 311-339 247-278 (375)
105 3lpj_A Beta-secretase 1; alzhe 31.6 33 0.0011 31.8 3.6 28 306-333 75-104 (455)
106 4aa9_A Chymosin; hydrolase, as 31.5 38 0.0013 29.5 3.8 23 318-340 208-230 (320)
107 3fv3_A SAPP1P-secreted asparti 31.2 34 0.0012 30.1 3.5 30 311-340 204-237 (339)
108 1j71_A Candidapepsin, aspartic 31.1 39 0.0013 29.7 3.9 29 311-339 202-234 (334)
109 3psg_A Pepsinogen; hydrolase(a 30.3 37 0.0013 30.5 3.6 71 306-379 57-142 (370)
110 3tir_A ROUS sarcoma virus caps 29.9 1.2E+02 0.0042 25.0 6.3 63 125-187 153-222 (226)
111 3vla_A EDGP; extracellular, in 29.1 64 0.0022 29.4 5.1 28 305-332 20-49 (413)
112 2qp8_A Beta-secretase 1; BACE1 29.0 29 0.00099 31.4 2.7 21 319-339 233-253 (395)
113 3k1w_A Renin; protease, altern 28.8 45 0.0015 29.3 3.9 23 317-339 220-242 (341)
114 1qdm_A Prophytepsin; aspartic 28.5 41 0.0014 31.5 3.7 71 306-379 53-139 (478)
115 1bxo_A Protein (penicillopepsi 28.2 35 0.0012 29.9 3.0 25 316-340 206-230 (323)
116 2pzo_E CAP-Gly domain-containi 28.1 14 0.00048 21.2 0.2 18 250-267 20-37 (42)
117 1am5_A Pepsin, acid proteinase 27.9 30 0.001 30.3 2.5 22 318-339 209-230 (324)
118 1izd_A Aspartic proteinase; su 27.7 36 0.0012 29.8 3.0 25 316-340 207-231 (323)
119 1twf_J DNA-directed RNA polyme 27.1 19 0.00066 23.5 0.8 10 250-259 4-13 (70)
120 3alr_A Nanos protein; zinc-fin 26.9 27 0.00091 24.7 1.5 19 250-268 71-92 (106)
121 3vf3_A Beta-secretase 1; struc 26.8 33 0.0011 31.1 2.7 21 319-339 240-260 (402)
122 2da3_A Alpha-fetoprotein enhan 26.4 1.4E+02 0.0048 19.6 5.7 46 44-94 21-69 (80)
123 3vla_A EDGP; extracellular, in 26.2 42 0.0015 30.6 3.3 21 319-339 267-287 (413)
124 2jmo_A Parkin; IBR, E3 ligase, 25.6 14 0.00048 25.0 -0.1 17 251-268 59-75 (80)
125 3lpj_A Beta-secretase 1; alzhe 25.2 37 0.0013 31.4 2.7 21 319-339 286-306 (455)
126 1ibq_A Aspergillopepsin; aspar 25.2 37 0.0013 29.7 2.6 24 317-340 208-231 (325)
127 1oew_A Endothiapepsin; hydrola 24.9 40 0.0014 29.5 2.8 24 317-340 212-235 (329)
128 2x0b_A Renin; hydrolase-hormon 24.9 47 0.0016 30.0 3.3 23 318-340 264-286 (383)
129 1miq_A Plasmepsin; aspartic pr 24.2 22 0.00074 32.1 0.9 28 307-334 64-93 (375)
130 2kt0_A Nanog, homeobox protein 23.4 1.7E+02 0.0057 19.4 6.8 40 55-94 32-74 (84)
131 3c9x_A Trichoderma reesei aspa 23.3 42 0.0014 29.4 2.6 24 317-340 213-236 (329)
132 3gv2_A Ca, fusion protein cons 22.9 1.5E+02 0.0051 26.2 5.9 61 126-187 151-218 (342)
133 2pma_A Uncharacterized protein 22.7 42 0.0014 25.7 2.0 24 315-338 17-40 (146)
134 3psg_A Pepsinogen; hydrolase(a 20.2 51 0.0018 29.5 2.5 24 317-340 253-276 (370)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=98.98 E-value=9.1e-10 Score=87.15 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=56.8
Q ss_pred CcceEEEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCceEEEEeCCCeEecCceeeceEEEecCeeee
Q 036272 304 PHTMRVHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCLFSVVVANGERLSSPGRCKGVRLTLQDVPIE 378 (383)
Q Consensus 304 ~~~~~~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~i~~~~~~ 378 (383)
...+++.+.|||.++++||||||++|||+.++|+++|+.....................|.+..++|.|+++.+.
T Consensus 22 ~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~ 96 (148)
T 3s8i_A 22 VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQ 96 (148)
T ss_dssp CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETTEEEE
T ss_pred cCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECCEEEE
Confidence 467899999999999999999999999999999999997542222222222223456677778899999998764
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.1e-08 Score=79.93 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=52.8
Q ss_pred CcceEEEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCceE-EEEeCCCeEecCceeeceEEEecCeeee
Q 036272 304 PHTMRVHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCLFS-VVVANGERLSSPGRCKGVRLTLQDVPIE 378 (383)
Q Consensus 304 ~~~~~~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~~~-v~~~~g~~~~~~~~~~~~~v~i~~~~~~ 378 (383)
...+.+.+.|||.++.+||||||++++|+.++|+++|+......... ...+.|.. ...+.+....|.|+++.+.
T Consensus 24 ~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~-~~~~~~~~~~i~ig~~~~~ 98 (148)
T 2i1a_A 24 VPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTG-KIIGRIHQAQVKIETQYIP 98 (148)
T ss_dssp CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC------------CEEEEEEEEEETTEEEE
T ss_pred cceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCc-ccccEEEEEEEEECCEEec
Confidence 45788999999999999999999999999999999999765433332 22333333 2356666678999998764
No 3
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=98.51 E-value=3.3e-07 Score=67.13 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=59.1
Q ss_pred cceEEEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCceEEEEeCCCeEecCceeeceEEEecCeeee
Q 036272 305 HTMRVHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCLFSVVVANGERLSSPGRCKGVRLTLQDVPIE 378 (383)
Q Consensus 305 ~~~~~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~i~~~~~~ 378 (383)
..+.+.+.|+|..+.+|+||||+.++|++..+..++++..+.. .....+.|..+... ..++++++.|+.+.
T Consensus 7 ~RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~-p~~i~GiGG~i~v~--~~~i~i~i~g~~~~ 77 (104)
T 1fmb_A 7 KRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQ-GTGIGGVGGNVETF--STPVTIKKKGRHIK 77 (104)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEE-CCCEEETTEEECCE--EEEEEEEETTEEEE
T ss_pred CCCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCC-ccEEEeCCCeEEee--EeeeEEEECCeEEE
Confidence 3466889999999999999999999999999999999876222 36677889988887 67899999987653
No 4
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.43 E-value=5.1e-08 Score=52.06 Aligned_cols=20 Identities=25% Similarity=0.760 Sum_probs=17.5
Q ss_pred ccccccCCCcccccccceeE
Q 036272 251 ELCYSCDENYTVGHKCKKLF 270 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~~~ 270 (383)
..||+||+.||++++||.+.
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 57999999999999999754
No 5
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.37 E-value=8.6e-08 Score=52.68 Aligned_cols=22 Identities=14% Similarity=0.465 Sum_probs=18.6
Q ss_pred cCccccccCCCcccccccceeE
Q 036272 249 EQELCYSCDENYTVGHKCKKLF 270 (383)
Q Consensus 249 ~~~~Cf~C~~~GH~a~~Cp~~~ 270 (383)
+...||+|++.||++++|+.+.
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCSSS
T ss_pred CCCEEEECCccccCHhHCcccc
Confidence 3467999999999999998653
No 6
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.33 E-value=1.2e-07 Score=55.80 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.1
Q ss_pred CccccccCCCcccccccceeEE
Q 036272 250 QELCYSCDENYTVGHKCKKLFF 271 (383)
Q Consensus 250 ~~~Cf~C~~~GH~a~~Cp~~~~ 271 (383)
...||+|++.||++++||++..
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCeeeECCCCCcchhhCcCCcc
Confidence 4679999999999999998553
No 7
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.14 E-value=5.4e-07 Score=57.39 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.0
Q ss_pred CccccccCCCcccccccceeEE
Q 036272 250 QELCYSCDENYTVGHKCKKLFF 271 (383)
Q Consensus 250 ~~~Cf~C~~~GH~a~~Cp~~~~ 271 (383)
...||+||+.||++++||++..
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCcceeCCCCCcccccCcCCcc
Confidence 4679999999999999998544
No 8
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=97.98 E-value=1.8e-05 Score=56.86 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=50.9
Q ss_pred ceEEEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCceEEEEeCCCeEecCceeeceEEEecCeeee
Q 036272 306 TMRVHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCLFSVVVANGERLSSPGRCKGVRLTLQDVPIE 378 (383)
Q Consensus 306 ~~~~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~i~~~~~~ 378 (383)
...+.+.|+|..+.+|+||||++++|++ ..++.... ...+.+.|..+..... ..++++|.|+...
T Consensus 8 RP~vti~I~Gq~~e~LLDTGAD~TVl~~-----~~~Pg~w~--pk~igGiGG~i~v~qy-~~i~iei~g~~~~ 72 (99)
T 3ec0_A 8 RPVVTAYIEGQPVEVLLDTGADDSIVAG-----IELGNNYS--PKIVGGIGGFINTKEY-KNVEIEVLNKKVR 72 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEESS-----CCCCSCCE--EEEEEETTEEEEEEEE-EEEEEEETTEEEE
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEcC-----cccCCCCC--ceEEEecCCcEeeeEE-eeEEEEECCeEEE
Confidence 4567889999999999999999999963 44544332 4578889999988874 6799999887643
No 9
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=97.88 E-value=4.7e-05 Score=54.88 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=50.3
Q ss_pred ceEEEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCceEEEEeCCCeEecCceeeceEEEecCeee
Q 036272 306 TMRVHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCLFSVVVANGERLSSPGRCKGVRLTLQDVPI 377 (383)
Q Consensus 306 ~~~~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~i~~~~~ 377 (383)
...+.+.|+|..+.+|+||||+.++|++ ..++... ......+.|..+...+. .+++++|.|...
T Consensus 8 rP~vtvkI~Gq~~eaLLDTGAD~TVl~~-----~~~p~~w--kpk~igGiGG~i~v~qy-~qi~iei~g~~~ 71 (99)
T 2hs1_A 8 RPLVTIKIGGQLKEALLDTGADDTIIEE-----MSLPGRW--KPKMIGGIGGFIKVRQY-DQIIIEIAGHKA 71 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSEEESC-----CSSCCCC--EEEEEEETTEEEEEEEE-EEEEEEETTEEE
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEec-----ccCCCCC--CCcEEEeCCCcEeeeEe-ccEEEEEeCCEE
Confidence 3567889999999999999999999995 3454433 24678888988888754 579999998654
No 10
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=8.6e-06 Score=51.61 Aligned_cols=18 Identities=17% Similarity=0.497 Sum_probs=16.6
Q ss_pred ccccccCCCcccccccce
Q 036272 251 ELCYSCDENYTVGHKCKK 268 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~ 268 (383)
..||+||+.||++++||.
T Consensus 8 ~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp CCCTTTCCTTSCGGGCSG
T ss_pred CccccCCCcCcccccCCC
Confidence 579999999999999984
No 11
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=97.68 E-value=3.4e-05 Score=58.79 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=47.0
Q ss_pred CCcceEEEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCceEEEEeCCCeEecCceeeceEEEecCeeee
Q 036272 303 TPHTMRVHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCLFSVVVANGERLSSPGRCKGVRLTLQDVPIE 378 (383)
Q Consensus 303 ~~~~~~~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~i~~~~~~ 378 (383)
....+.+.+.|||..+.+||||||+.++|++..+. . +..+..+..++| .+. ......++|+|.+..+.
T Consensus 19 ~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p-----~-~~~p~~I~GiGG-~i~-vr~~~~i~IeI~g~~~~ 86 (132)
T 3slz_A 19 PPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP-----L-SDKSAWVQGATG-GKR-YRWTTDRKVHLATGKVT 86 (132)
T ss_dssp CCCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS-----E-EEEEEEEECSSC-EEE-EEEECCEEEEETTEEEE
T ss_pred ccCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC-----C-CCCceEEEccCC-EEE-EEEEeeeEEEECCeeec
Confidence 34567788999999999999999999999975333 2 222344444455 444 44445678888887654
No 12
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=97.51 E-value=0.00011 Score=54.57 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=46.5
Q ss_pred ceEEEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCceEE-EEeCCCeEecCceeeceEEEecCee
Q 036272 306 TMRVHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCLFSV-VVANGERLSSPGRCKGVRLTLQDVP 376 (383)
Q Consensus 306 ~~~~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~~~v-~~~~g~~~~~~~~~~~~~v~i~~~~ 376 (383)
...+ +.|+|..+.+|+||||+.++|++.-+... +... .... ..+.|..+.... ..+++++|.|..
T Consensus 14 rP~v-ikI~Gq~~eaLLDTGAD~TVi~~~~~~~~--p~~w--kpk~~igGiGG~i~v~q-y~qv~iei~g~~ 79 (116)
T 2hah_A 14 PEIL-IFVNGYPIKFLLDTGADITVLNRRDFQVK--NSIE--NGRQMIGGIGGFIRGTN-YINVHLEIRDEN 79 (116)
T ss_dssp CEEE-EEETTEEEEEEECTTCSSCEEEGGGCCCT--TCEE--EEEEEEEETTEEEEEEE-EEEEEEEECCTT
T ss_pred CCEE-EEECCEEEEEEecCCCCcEEEcccccccC--CCCC--CCceEEecCCCceeeeE-EccEEEEEeCCC
Confidence 4556 89999999999999999999996422111 3322 2344 778888888864 457888888753
No 13
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.50 E-value=3.1e-05 Score=45.76 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=15.7
Q ss_pred ccccccCCCcccccccce
Q 036272 251 ELCYSCDENYTVGHKCKK 268 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~ 268 (383)
..||+|++.||++++||+
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 579999999999999984
No 14
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.47 E-value=2.2e-05 Score=48.96 Aligned_cols=19 Identities=16% Similarity=0.599 Sum_probs=13.7
Q ss_pred ccccccCCCccccccccee
Q 036272 251 ELCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~~ 269 (383)
..||+|++.||++++||.+
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 4577777777777777764
No 15
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.46 E-value=3.7e-05 Score=44.81 Aligned_cols=16 Identities=25% Similarity=0.939 Sum_probs=8.2
Q ss_pred ccccCCCcccccccce
Q 036272 253 CYSCDENYTVGHKCKK 268 (383)
Q Consensus 253 Cf~C~~~GH~a~~Cp~ 268 (383)
||+|++.||++++||.
T Consensus 3 C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCRA 18 (37)
T ss_dssp BSSSCCSSCCTTTSSC
T ss_pred ccccCCCCcchhhCcC
Confidence 5555555555555543
No 16
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.46 E-value=2.9e-05 Score=45.89 Aligned_cols=18 Identities=17% Similarity=0.683 Sum_probs=16.8
Q ss_pred cccccCCCccccccccee
Q 036272 252 LCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 252 ~Cf~C~~~GH~a~~Cp~~ 269 (383)
.||+|++.||++++||.+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 599999999999999975
No 17
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.44 E-value=3.7e-05 Score=44.80 Aligned_cols=18 Identities=17% Similarity=0.835 Sum_probs=16.5
Q ss_pred ccccccCCCcccccccce
Q 036272 251 ELCYSCDENYTVGHKCKK 268 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~ 268 (383)
..||+|++.||++++||+
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 579999999999999984
No 18
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.42 E-value=4.1e-05 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=19.8
Q ss_pred cCccccccCCCcccccccceeEE
Q 036272 249 EQELCYSCDENYTVGHKCKKLFF 271 (383)
Q Consensus 249 ~~~~Cf~C~~~GH~a~~Cp~~~~ 271 (383)
....||+||+.||++++||.++.
T Consensus 45 ~~~~CYnCG~~GH~~rdC~~~r~ 67 (83)
T 3nyb_B 45 HTIYCYNCGGKGHFGDDCKEKRS 67 (83)
T ss_dssp CCCBCSSSSCBSSCGGGCSSCCS
T ss_pred CCCeecccCCCCcCcccCCcccc
Confidence 34689999999999999998664
No 19
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.28 E-value=9.4e-05 Score=47.45 Aligned_cols=21 Identities=14% Similarity=0.645 Sum_probs=15.8
Q ss_pred cCccccccCCCccccccccee
Q 036272 249 EQELCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 249 ~~~~Cf~C~~~GH~a~~Cp~~ 269 (383)
+...||+|++.||++++||.+
T Consensus 11 ~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 11 KTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GTCBCTTTCCBSSCGGGCSSC
T ss_pred CCcceeeeCCCCcChhhcCCC
Confidence 345688888888888888764
No 20
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.25 E-value=8.7e-05 Score=46.25 Aligned_cols=19 Identities=26% Similarity=0.600 Sum_probs=17.2
Q ss_pred ccccccCCCccccccccee
Q 036272 251 ELCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~~ 269 (383)
..||+|++.||++++||..
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 5799999999999999964
No 21
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.21 E-value=8.7e-05 Score=48.66 Aligned_cols=18 Identities=33% Similarity=0.802 Sum_probs=11.9
Q ss_pred ccccccCCCcccccccce
Q 036272 251 ELCYSCDENYTVGHKCKK 268 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~ 268 (383)
..||+|++.||++++||.
T Consensus 5 ~~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp TBCSSSCCBTCCGGGCTT
T ss_pred CcccccCCCCeehhhCcC
Confidence 456666666666666665
No 22
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=97.20 E-value=0.00084 Score=54.94 Aligned_cols=65 Identities=8% Similarity=0.013 Sum_probs=50.0
Q ss_pred ceEEEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCceEEEEeCCCeEecCceeeceEEEecCeeee
Q 036272 306 TMRVHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCLFSVVVANGERLSSPGRCKGVRLTLQDVPIE 378 (383)
Q Consensus 306 ~~~~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~i~~~~~~ 378 (383)
.+.+.+.|+|..+.+|+||||+.|+|. .++++... ....+.+.|..+..... ..++++|.|+...
T Consensus 8 RP~vtv~I~Gq~~e~LLDTGAD~TVl~-----~~~lpg~w--~pk~igGIGG~i~vrqy-~~i~iei~g~~~~ 72 (203)
T 3ka2_A 8 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPGXW--KPKLIGGIAGFIKVRQY-DQIPVEIXGHKAI 72 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCSSCE--EEEEEEETTEEEEEEEE-EEEEEEETTEEEE
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEe-----cccCCCCC--CceEEEEccCcEEEEEE-cceeEEEcCeEEE
Confidence 456788999999999999999999998 36665532 24567788887777655 4689999887643
No 23
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.16 E-value=0.00011 Score=48.24 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.1
Q ss_pred ccccccCCCcccccccceeEE
Q 036272 251 ELCYSCDENYTVGHKCKKLFF 271 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~~~~ 271 (383)
..||+|++.||++++||....
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~~ 51 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKRDG 51 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCCC-
T ss_pred CeeCCCCCCCCCcCCCcCCCc
Confidence 679999999999999997543
No 24
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.13 E-value=0.00013 Score=47.70 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=17.8
Q ss_pred CccccccCCCccccccccee
Q 036272 250 QELCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 250 ~~~Cf~C~~~GH~a~~Cp~~ 269 (383)
...||+|++.||++++||..
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCT
T ss_pred CcceeECCCCCCccCcCCCc
Confidence 46799999999999999864
No 25
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.11 E-value=0.00013 Score=46.71 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=17.3
Q ss_pred ccccccCCCccccccccee
Q 036272 251 ELCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~~ 269 (383)
..||+|++.||++++||..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 5799999999999999964
No 26
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.08 E-value=8.1e-05 Score=48.72 Aligned_cols=20 Identities=15% Similarity=0.571 Sum_probs=0.0
Q ss_pred ccccccCCCcccccccceeE
Q 036272 251 ELCYSCDENYTVGHKCKKLF 270 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~~~ 270 (383)
..||+|++.||++++||...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp --------------------
T ss_pred CccccCCCCCcCHhhCcCCC
Confidence 35999999999999999753
No 27
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=0.00021 Score=47.15 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=16.5
Q ss_pred CccccccCCCccccccccee
Q 036272 250 QELCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 250 ~~~Cf~C~~~GH~a~~Cp~~ 269 (383)
...||+|++.||++++||..
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGG
T ss_pred CCccCCcCCcCCccCcCCCc
Confidence 35799999999999999864
No 28
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.94 E-value=0.00025 Score=46.78 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=17.1
Q ss_pred ccccccCCCccccccccee
Q 036272 251 ELCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~~ 269 (383)
..||+|++.||++++||.+
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSC
T ss_pred CcccccCCCCcChhhCCCC
Confidence 5699999999999999964
No 29
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=96.86 E-value=0.00029 Score=47.98 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=14.2
Q ss_pred ccccccCCCcccccccce
Q 036272 251 ELCYSCDENYTVGHKCKK 268 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~ 268 (383)
..||+|++.||++++|+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 468888888888888874
No 30
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=96.83 E-value=0.00035 Score=47.51 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.8
Q ss_pred CccccccCCCccccccccee
Q 036272 250 QELCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 250 ~~~Cf~C~~~GH~a~~Cp~~ 269 (383)
...||+|++.||++++||..
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp CCCCTTTCCTTSCGGGCTTG
T ss_pred CCccCCcCCcCCccCcCcCC
Confidence 46799999999999999864
No 31
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=96.71 E-value=0.004 Score=45.41 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=41.5
Q ss_pred ceEEEEEEc-----CeEEEEEeeCCCcchhccHHHHHHhCCccccCC-ceEEEEeCCCeEecCceeeceEEEecC
Q 036272 306 TMRVHSQIS-----KIPLTILIDSGSTHNYLHHRFAKITRIKPERSC-LFSVVVANGERLSSPGRCKGVRLTLQD 374 (383)
Q Consensus 306 ~~~~~~~i~-----~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~v~i~~ 374 (383)
...+.+.|+ |..+.||+||||+.++|.+ ..++..... ...++.+-|..+.. -....++|.+-.
T Consensus 10 RPlvtikI~~~~~~Gq~~eaLLDTGADdTVl~~-----~~lPg~Wkp~~tkiiGGiGg~~~~-~qs~~~pv~i~l 78 (116)
T 3liy_A 10 RPVIKAQVDTQTSHPKTIEALLDTGADMTVIPI-----ALFSSNTPLKNTSVLGAGGQTQDH-FKLTSLPVLIRL 78 (116)
T ss_dssp CCEEEEEEECSSSCCEEEEEEECTTBSSCEEEG-----GGSCTTCCEEECCEEETTEEESSS-EEEESSCEEEEC
T ss_pred CCeEEEEEccccCCCeEeEEEeccCCCccEEec-----ccCCCCCcccccceEeecccceee-eEecCCCeEEEe
Confidence 456788899 9999999999999999984 445544322 11345555544433 344567777665
No 32
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=96.70 E-value=0.0058 Score=49.99 Aligned_cols=64 Identities=9% Similarity=0.070 Sum_probs=49.2
Q ss_pred ceEEEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCceEEEEeCCCeEecCceeeceEEEecCeee
Q 036272 306 TMRVHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCLFSVVVANGERLSSPGRCKGVRLTLQDVPI 377 (383)
Q Consensus 306 ~~~~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~i~~~~~ 377 (383)
...+.+.++|..+.+|+||||++|+|. .++++.... +....+-|..+..... ..+++++.|+..
T Consensus 112 rP~~~iki~Gq~~e~LlDTGAD~TVl~-----~~~lpg~w~--pk~igGiGg~i~v~qy-~~i~iei~g~~~ 175 (203)
T 3ka2_A 112 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPGXWK--PKLIGGIGGFIKVRQY-DQIPVEIXGHKA 175 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCCSCCE--EEEEEETTEEEEEEEE-EEEEEEETTEEE
T ss_pred CCcEEEEECCEEEeeeecccCCceeee-----cccCCCCCC--ceEEeeccceEEEEEe-ccEEEEECCeEE
Confidence 456788999999999999999999995 355554432 3567788888888766 568888888754
No 33
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=96.62 E-value=0.0019 Score=48.41 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=34.1
Q ss_pred EcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCc--eE-EEEeCCCeEecCceeeceEEEecCe
Q 036272 313 ISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCL--FS-VVVANGERLSSPGRCKGVRLTLQDV 375 (383)
Q Consensus 313 i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~--~~-v~~~~g~~~~~~~~~~~~~v~i~~~ 375 (383)
++|+.+.+|+||||+.++|.+ ..++.....- .. .+.+.|..+.....-..+++++-|.
T Consensus 27 i~gq~~eaLLDTGAD~TVl~~-----~~lP~~W~k~~~~~~~igGIGG~i~v~qy~~~i~iei~g~ 87 (124)
T 2rsp_A 27 QRSVYITALLDSGADITIISE-----EDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIELGVINR 87 (124)
T ss_dssp CSEEEEEEEECTTCSSCEEET-----TTSCTTSCEEECC---------CCCEEEESSCEEEEEECT
T ss_pred CCCEEEEEEecCCCCcEEEec-----ccCCCcceeeccccceeeecCceEeeEEeCCceEEEEeCC
Confidence 789999999999999999985 4444433210 00 1455566666655433777777664
No 34
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.49 E-value=0.0008 Score=52.76 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=15.3
Q ss_pred ccccccCCCcccccccce
Q 036272 251 ELCYSCDENYTVGHKCKK 268 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~ 268 (383)
..||+|++.||++++||.
T Consensus 98 ~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CCCTTTCCSSCCGGGCCS
T ss_pred CcccEeCCccchhhhCCC
Confidence 469999999999999986
No 35
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.00084 Score=46.70 Aligned_cols=20 Identities=15% Similarity=0.516 Sum_probs=16.8
Q ss_pred CccccccCCCccccccccee
Q 036272 250 QELCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 250 ~~~Cf~C~~~GH~a~~Cp~~ 269 (383)
...||+|++.||++++||..
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG
T ss_pred cCCCCCCCCCCCccccCCCc
Confidence 45799999999999999975
No 36
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=96.37 E-value=0.0024 Score=46.98 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=35.8
Q ss_pred ceEEEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCC--ceEEEEeCCCeEecCc
Q 036272 306 TMRVHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSC--LFSVVVANGERLSSPG 363 (383)
Q Consensus 306 ~~~~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~--~~~v~~~~g~~~~~~~ 363 (383)
...+.+.|+|..+.+|+||||+.++|.. ..++....+ ....+.+-|..+....
T Consensus 9 RP~vti~I~Gq~~eaLLDTGADdTVi~~-----~~lpg~W~p~~~~k~igGIGG~i~v~q 63 (114)
T 3sqf_A 9 KPSLTLWLDDKMFTGLINTGADVTIIKL-----EDWPPNWPITDTLTNLRGIGQSNNPKQ 63 (114)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEG-----GGSCTTSCEEECCCCCTTCCGGGCCEE
T ss_pred CCeEEEEECCEEEEEEEccCCCceEEec-----ccCCCCcccCcCceEEEeccceEEEEE
Confidence 4567789999999999999999999985 344443222 1234445555555544
No 37
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.19 E-value=0.0014 Score=51.37 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.8
Q ss_pred CccccccCCCccccccccee
Q 036272 250 QELCYSCDENYTVGHKCKKL 269 (383)
Q Consensus 250 ~~~Cf~C~~~GH~a~~Cp~~ 269 (383)
...||+|++.||++++||..
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTT
T ss_pred CCcccccCCcCCEeccCcCC
Confidence 46799999999999999964
No 38
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0015 Score=49.69 Aligned_cols=20 Identities=30% Similarity=0.811 Sum_probs=17.9
Q ss_pred cCccccccCCCcccccccce
Q 036272 249 EQELCYSCDENYTVGHKCKK 268 (383)
Q Consensus 249 ~~~~Cf~C~~~GH~a~~Cp~ 268 (383)
....||+|++.||+++|||+
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 34789999999999999996
No 39
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.01 Score=44.99 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=9.5
Q ss_pred ccccccCCC-cccccccce
Q 036272 251 ELCYSCDEN-YTVGHKCKK 268 (383)
Q Consensus 251 ~~Cf~C~~~-GH~a~~Cp~ 268 (383)
..||+|++. ||++++||.
T Consensus 23 ~~C~~Cg~~~gH~~~~C~~ 41 (124)
T 2lli_A 23 IICSYCGATDDHYSRHCPK 41 (124)
T ss_dssp CCCTTTCCTTTCCTTTGGG
T ss_pred CcCcCCCCcCCccCcccCC
Confidence 345555555 555555554
No 40
>3lhr_A Zinc finger protein 24; SCAN domain, protein structure initiative, center for eukary structural genomics, PSI-2, CESG, nucleus, phosphoprotein; 1.90A {Homo sapiens} SCOP: a.28.3.0
Probab=91.57 E-value=2.1 Score=30.09 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=54.9
Q ss_pred HHHhhcccc--cccHhhHHHHHHHHHHHh--CCC-CHH-----HHHHHHHhhcchhHHhHccccCCCCHHHHHHHHHHHH
Q 036272 122 FGDLCKLKQ--TGTVSDYQPQFERLLARA--GSL-TDK-----QEAACFISGLKDGLRADVRAQNPQNLSAAIGLARNYE 191 (383)
Q Consensus 122 ~~~l~~~~q--~~sv~~Y~~~f~~l~~~~--~~~-~e~-----~~~~~f~~gL~~~l~~~l~~~~~~~l~~~~~~a~~~e 191 (383)
..+|+.... ..+..+.+.++.+|+..= +.+ +.+ .++..|+.-||.+++..+..+.|.+-.+++.++..+.
T Consensus 9 rq~FR~f~y~e~~gp~eal~~L~eLc~~WLrPe~htKEQileLLVLEQFL~ilP~e~q~wv~~~~p~s~~eav~l~E~l~ 88 (93)
T 3lhr_A 9 RQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVRDHHPENGEEAVTVLEDLE 88 (93)
T ss_dssp HHHHHHCCGGGSSSHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTCCSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444443 678888888988887765 222 333 3678899999999999999999999999999988766
Q ss_pred HH
Q 036272 192 LK 193 (383)
Q Consensus 192 ~~ 193 (383)
..
T Consensus 89 ~~ 90 (93)
T 3lhr_A 89 SE 90 (93)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 41
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=89.27 E-value=0.83 Score=31.64 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=45.5
Q ss_pred EEEEEcCeEEEEEeeCCCcchhccHHHHHHhCCccccCCceEEEEeCCCeEecCceeeceEEEecCeee
Q 036272 309 VHSQISKIPLTILIDSGSTHNYLHHRFAKITRIKPERSCLFSVVVANGERLSSPGRCKGVRLTLQDVPI 377 (383)
Q Consensus 309 ~~~~i~~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~i~~~~~ 377 (383)
+.+.+.|..+.+--||||+++.|.+.+... -.|.....+....|+..-..- .+.+.|+|+-+
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~----E~PI~~~~I~TIHG~k~q~vY---Yl~fKv~GRKv 71 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLED----ERPIQTMLIKTIHGEKQQDVY---YLTFKVQGRKV 71 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTT----CCCSEEEEEECSSCEEEEEEE---EEEEEESSCEE
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhcc----cccccceEEEEecCceeceEE---EEEEEEcCeEE
Confidence 566788999999999999999999987543 234445667777777654433 47777777654
No 42
>2fi2_A Zinc finger protein 42; SCAN domain, ZNF-42, MZF-1, homodimer, transcription factor, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=85.18 E-value=1.9 Score=30.12 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=46.8
Q ss_pred cccHhhHHHHHHHHHHHh--CCC-CHH-----HHHHHHHhhcchhHHhHccccCCCCHHHHHHHHHHHH
Q 036272 131 TGTVSDYQPQFERLLARA--GSL-TDK-----QEAACFISGLKDGLRADVRAQNPQNLSAAIGLARNYE 191 (383)
Q Consensus 131 ~~sv~~Y~~~f~~l~~~~--~~~-~e~-----~~~~~f~~gL~~~l~~~l~~~~~~~l~~~~~~a~~~e 191 (383)
.....+-+.++++|+..= +.+ +.+ ..+..|+.-||.+++..+..+.|.+-++++.++..+.
T Consensus 21 ~~gPreaL~rLreLc~qWLrPe~hTKEQIlElLVLEQFL~iLP~eiq~wV~~~~P~s~eeav~lvEdl~ 89 (94)
T 2fi2_A 21 ATGPQEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAALVDGLR 89 (94)
T ss_dssp TTCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHCCCSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHhCcHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 455666677777776654 222 333 4678899999999999999999999999999987654
No 43
>1y7q_A AW-1, zinc finger protein 174; SCAN domain, retroviral capsid C-terminal domain, dimer, C2H2 zinc finger associated, transcription; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=84.79 E-value=2.7 Score=29.63 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=50.7
Q ss_pred HHhhcccc--cccHhhHHHHHHHHHHHh--CCC-CHH-----HHHHHHHhhcchhHHhHccccCCCCHHHHHHHHHHHH
Q 036272 123 GDLCKLKQ--TGTVSDYQPQFERLLARA--GSL-TDK-----QEAACFISGLKDGLRADVRAQNPQNLSAAIGLARNYE 191 (383)
Q Consensus 123 ~~l~~~~q--~~sv~~Y~~~f~~l~~~~--~~~-~e~-----~~~~~f~~gL~~~l~~~l~~~~~~~l~~~~~~a~~~e 191 (383)
..|+...- .....+-+.++++|+..= +.+ +.+ ..+..|+.-||.+++..+..+.|.+-++++.++..+.
T Consensus 13 q~FR~f~y~e~~gPreaL~rLreLC~qWLrPe~hTKEQIlElLVLEQFL~iLP~eiq~wV~~~~P~s~eeav~lvEdl~ 91 (98)
T 1y7q_A 13 QSFRRFCYQEVSGPQEALSQLRQLCRQWLQPELHTKEQILELLVMEQFLTILPEEIQARVRHRCLMSSKEIVTLVEDFH 91 (98)
T ss_dssp HHHHTCCSCSCCSSHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHSCTHHHHHHHTSCCCCHHHHHHHHHHHH
T ss_pred HHhccCCCCCCCCHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 33444433 455667777777777665 322 333 4678899999999999999999999999999987765
No 44
>4e6s_A Zinc finger and SCAN domain-containing protein 10; protein interaction, other scans, N-terminal PA finger transcription factor, transcription; 1.85A {Mus musculus}
Probab=84.54 E-value=4.6 Score=28.33 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=50.6
Q ss_pred HHHhhcccc--cccHhhHHHHHHHHHHHh--CCC-CHH-----HHHHHHHhhcchhHHhHccccCCCCHHHHHHHHHHHH
Q 036272 122 FGDLCKLKQ--TGTVSDYQPQFERLLARA--GSL-TDK-----QEAACFISGLKDGLRADVRAQNPQNLSAAIGLARNYE 191 (383)
Q Consensus 122 ~~~l~~~~q--~~sv~~Y~~~f~~l~~~~--~~~-~e~-----~~~~~f~~gL~~~l~~~l~~~~~~~l~~~~~~a~~~e 191 (383)
..+|+.... ..+..+.+.++.+|+..= +.. +.+ .++..|+.-||.+++..+..+.|.+-.+++. +..+.
T Consensus 9 rq~Fr~f~y~e~~gPreal~~L~eLc~~WLrPe~htKEQIleLLVLEQFL~ilP~e~q~wv~~~~p~s~eeav~-~E~l~ 87 (93)
T 4e6s_A 9 HQLFRCFQYQEDMGPRASLGRLRELCNHWLRPALHTKKQILELLVLEQFLSVLPPHVLSRLHGAPLRDGEEVAQ-LEGVP 87 (93)
T ss_dssp HHHHHTCCCCTTTCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHTSCHHHHGGGTTCCCSCHHHHHH-TTC--
T ss_pred HHHHhccCCCCCCCHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhCCCcHHHHHH-HHHHh
Confidence 344555443 677888888888887765 222 333 3568899999999999999999999999988 65443
No 45
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=80.98 E-value=4.1 Score=29.33 Aligned_cols=64 Identities=13% Similarity=0.274 Sum_probs=45.1
Q ss_pred Hhhcccc--cccHhhHHHHHHHHHHHhC---CCCHHHHHHHHHhhcchhHHhHccccCC-CCHHHHHHHH
Q 036272 124 DLCKLKQ--TGTVSDYQPQFERLLARAG---SLTDKQEAACFISGLKDGLRADVRAQNP-QNLSAAIGLA 187 (383)
Q Consensus 124 ~l~~~~q--~~sv~~Y~~~f~~l~~~~~---~~~e~~~~~~f~~gL~~~l~~~l~~~~~-~~l~~~~~~a 187 (383)
.+..++| .|++++|+.+|........ ....-.....++.+-+++.+..+....+ .+|++.+..+
T Consensus 23 si~~IkQGpKEPf~dyVdR~~k~l~ae~~~~~vK~~mt~tL~~qNANpdCk~ilk~lg~~~tlee~~~ac 92 (105)
T 2jyl_A 23 SILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTAC 92 (105)
T ss_dssp CGGGCCCCSSSCHHHHHHHHHHHHHHHCCCTTTTTSCHHHHHHHTSCHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred chhhhhcCCCCcHHHHHHHHHHHHHHhhcchhhHHHhhhhhhHhhcCcchhhHHHccCCCCCHHHHHHHc
Confidence 3567888 8999999999998877653 1122244555677889998888876554 4777766543
No 46
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=80.92 E-value=8 Score=26.96 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=47.6
Q ss_pred cccc--cccHhhHHHHHHHHHHHhCCCCH----HHHHHHHHhhcchhHHhHcccc-CC-CCHHHHHHHHHHHH
Q 036272 127 KLKQ--TGTVSDYQPQFERLLARAGSLTD----KQEAACFISGLKDGLRADVRAQ-NP-QNLSAAIGLARNYE 191 (383)
Q Consensus 127 ~~~q--~~sv~~Y~~~f~~l~~~~~~~~e----~~~~~~f~~gL~~~l~~~l~~~-~~-~~l~~~~~~a~~~e 191 (383)
.++| .|++++|+.||-.-.+..+ .+. -.....++.+-+++-+..++.. .+ .++.|.+...+...
T Consensus 2 dIkQGPkEPFrDyVdRf~kalraeq-a~~~vK~wmt~tLlvQNANPdCk~iLkal~g~~~tl~em~~yi~~~~ 73 (96)
T 1eoq_A 2 DIMQGPSESFVDFANRLIKAVEGSD-LPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ 73 (96)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHSCHHHHHHHHHCCSCCCSHHHHHHHHHHHS
T ss_pred CcccCCCCcHHHHHHHHHHHHHHhh-ccHhHhhhhHHHHHHHhcCHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence 4678 8999999999998877643 222 2455777888899999888865 44 68888888765544
No 47
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=80.50 E-value=1.6 Score=31.11 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.7
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHH 333 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~ 333 (383)
...+.+.|+ .+++.++|||||+...|..
T Consensus 14 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 43 (97)
T 1lya_A 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPS 43 (97)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred eEEEEEEECCCCeEEEEEEeCCCCceEEeE
Confidence 355667787 6899999999999998764
No 48
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=77.40 E-value=7.6 Score=26.55 Aligned_cols=67 Identities=10% Similarity=0.176 Sum_probs=47.2
Q ss_pred hhcccc--cccHhhHHHHHHHHHHHhC---CCCHHHHHHHHHhhcchhHHhHccccC-CCCH-HHHHHHHHHHH
Q 036272 125 LCKLKQ--TGTVSDYQPQFERLLARAG---SLTDKQEAACFISGLKDGLRADVRAQN-PQNL-SAAIGLARNYE 191 (383)
Q Consensus 125 l~~~~q--~~sv~~Y~~~f~~l~~~~~---~~~e~~~~~~f~~gL~~~l~~~l~~~~-~~~l-~~~~~~a~~~e 191 (383)
|..++| +|++.+|+.+|..-...-. ...+-+....++.+-+++.+..+.... -..+ .|+|.-+...+
T Consensus 3 ~tdI~QGPkEPF~dfVdRl~kal~~eq~~~~vK~~m~~tLlvQNANpdCk~Il~~~~~~~~~~~e~Ik~~l~~~ 76 (87)
T 3g1g_A 3 WADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ 76 (87)
T ss_dssp TTTCCCCTTCCHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHSCHHHHHHHHTSCTTCCSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCChHHHHHHHHHHh
Confidence 456889 8999999999998776642 223445667778888888888776443 3445 78887665444
No 49
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=76.04 E-value=8.8 Score=28.56 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=30.6
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHHHHhCCchhhHHHHhhhhccc
Q 036272 40 AKLDFPCYDGSEDPTLWICRAEQFFEFQGTSLENQVKLAAYHLEN 84 (383)
Q Consensus 40 ~~~~~p~F~G~~d~~~w~~~~e~~~~~~~~~d~~k~~~~~~~L~g 84 (383)
+++..|.|.|.....+....++.|......|...-+.++..||..
T Consensus 25 ~~p~~P~f~g~t~l~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~ 69 (124)
T 3vu7_H 25 VRPPAPNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTD 69 (124)
T ss_dssp -----CCCSSSCSHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred CCCCCCccCCCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 444568999987777777777778777777777777777777643
No 50
>3ds4_A HIV-1 capsid protein; HIV, mutant, polyprotein, complex(viral protein/peptide), mainly alpha; 1.12A {Human immunodeficiency virus 1} PDB: 3dph_A 1a43_A 2xt1_A 2buo_A 3lry_A 2kod_A 3ds1_A 3dtj_A 3ds0_A 3ds5_A 3ds2_A 3ds3_A 2jo0_A 2jyg_A 2xxm_A 2xv6_A 2ont_A 1aum_A 1a8o_A 4arg_B ...
Probab=74.94 E-value=12 Score=25.77 Aligned_cols=62 Identities=10% Similarity=0.186 Sum_probs=42.4
Q ss_pred hhcccc--cccHhhHHHHHHHHHHHhCCCCHH----HHHHHHHhhcchhHHhHccccC-CCCHHHHHHHH
Q 036272 125 LCKLKQ--TGTVSDYQPQFERLLARAGSLTDK----QEAACFISGLKDGLRADVRAQN-PQNLSAAIGLA 187 (383)
Q Consensus 125 l~~~~q--~~sv~~Y~~~f~~l~~~~~~~~e~----~~~~~f~~gL~~~l~~~l~~~~-~~~l~~~~~~a 187 (383)
+..++| +|++++|+.+|........ .+.+ ......+.+-+++-+..+.... -.+|++.+..+
T Consensus 5 ~~~i~QGpkEpf~dfv~rl~k~l~~e~-~~~~vK~~m~~tL~~qNAnp~Ck~il~~l~~~~~lee~~~aC 73 (86)
T 3ds4_A 5 ILDIRQGPKEPFRDYVDRFYKTLRAEQ-ASQEVKNWMTETLLVQNANPDCKTILKALGPGATSEEMMTAC 73 (86)
T ss_dssp GGGCCCCTTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTSCHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhccccCCCCcHHHHHHHHHHHHHHhc-cchhHHHHHHHhHHHHhccHHHHHHHHccCCCCCHHHHHHHc
Confidence 567888 8999999999998876543 2332 3445566667888887776444 35777777643
No 51
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=71.11 E-value=9.3 Score=25.50 Aligned_cols=62 Identities=11% Similarity=0.206 Sum_probs=41.7
Q ss_pred hhcccc--cccHhhHHHHHHHHHHHhCCCCH----HHHHHHHHhhcchhHHhHccccC-CCCH-HHHHHHH
Q 036272 125 LCKLKQ--TGTVSDYQPQFERLLARAGSLTD----KQEAACFISGLKDGLRADVRAQN-PQNL-SAAIGLA 187 (383)
Q Consensus 125 l~~~~q--~~sv~~Y~~~f~~l~~~~~~~~e----~~~~~~f~~gL~~~l~~~l~~~~-~~~l-~~~~~~a 187 (383)
+..++| +|++.+|+.+|..-...-. .++ -+....++.+-+++-+..+.... -..+ .|+|.-.
T Consensus 4 ~tdI~QGPkEPF~dfVdRl~kal~~e~-~~~~vk~~m~~tLl~QNANpdCk~ilk~l~~~~~~~~e~ik~~ 73 (77)
T 3g21_A 4 WADIMQGPSESFVDFANRLIKAVEGSD-LPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYV 73 (77)
T ss_dssp GGGCCCCTTCCHHHHHHHHHHHHHTSS-SCHHHHHHHHHHHHHHHSCHHHHHHHTTSCTTCCSHHHHHHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 457889 8999999999998766543 232 24555666777888777776433 3344 7776643
No 52
>1qrj_B HTLV-I capsid protein; retrovirus, two-domain protein, alpha helical protein, heteronuclear spectroscopy; NMR {Human t-cell lymphotrophic virus TYPE1} SCOP: a.28.3.1 a.73.1.1
Probab=61.67 E-value=25 Score=28.53 Aligned_cols=62 Identities=10% Similarity=0.046 Sum_probs=45.5
Q ss_pred hhcccc--cccHhhHHHHHHHHHHHhC---CCCHHHHHHHHHhhcchhHHhHccccC-C-CCHHHHHHH
Q 036272 125 LCKLKQ--TGTVSDYQPQFERLLARAG---SLTDKQEAACFISGLKDGLRADVRAQN-P-QNLSAAIGL 186 (383)
Q Consensus 125 l~~~~q--~~sv~~Y~~~f~~l~~~~~---~~~e~~~~~~f~~gL~~~l~~~l~~~~-~-~~l~~~~~~ 186 (383)
+..++| .|++++|+.+|.+..+... ....-......+.+-+++-+..+.... + .+|+|.+..
T Consensus 118 ~~~IkQGpkEPf~dfVdR~~k~l~ae~~~~~vK~~~~~tL~~qNANpdCk~ilk~l~~~~~tlee~~~a 186 (199)
T 1qrj_B 118 WASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKECQKLLQARGHTNSPLGDMLRA 186 (199)
T ss_dssp GGGCCBCTTSCHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHTTTBCHHHHHHHHHTTCSSSCHHHHHHH
T ss_pred cchhhcCCCCcHHHHHHHHHHHHHhhcCchhhhhHHHHHHHHHhcCchhHHHHHhcCCCCCCHHHHHHH
Confidence 346788 8999999999998777652 233456667778888999888887654 4 578776654
No 53
>1baj_A GAG polyprotein; capsid, HIV-1 assembly protein, viral protein; 2.60A {Human immunodeficiency virus 1} SCOP: a.28.3.1
Probab=61.55 E-value=19 Score=25.58 Aligned_cols=65 Identities=12% Similarity=0.260 Sum_probs=43.3
Q ss_pred hhcccc--cccHhhHHHHHHHHHHHhCCCCHH----HHHHHHHhhcchhHHhHccccCC-CCHHHHHHHHHHH
Q 036272 125 LCKLKQ--TGTVSDYQPQFERLLARAGSLTDK----QEAACFISGLKDGLRADVRAQNP-QNLSAAIGLARNY 190 (383)
Q Consensus 125 l~~~~q--~~sv~~Y~~~f~~l~~~~~~~~e~----~~~~~f~~gL~~~l~~~l~~~~~-~~l~~~~~~a~~~ 190 (383)
+..++| .|++++|+.+|........ .+.+ .....++..-+++-+..+....+ .+|++.+..+...
T Consensus 6 ~~~ikQGpkepf~d~v~R~~k~l~~e~-~~~~vK~~~~~tL~~qnanp~Ck~~lk~l~~~~~l~e~~~ac~~v 77 (101)
T 1baj_A 6 ILDIRQGPKEPFRDYVDRFYKTLRAEQ-ASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGV 77 (101)
T ss_dssp GGGCCCCSSCCHHHHHHHHHHHHHHTT-CCHHHHHHHHHTHHHHTSCHHHHHHHHHHCSSCCHHHHHHHC---
T ss_pred hhhhhcCCCCcHHHHHHHHHHHHHHhh-ccHHHHHHHhhhHHHHhhchhhhHHHHccCCCCCHHHHHHhcccc
Confidence 567888 8999999999998877653 3433 23344566678888887775544 5777776655433
No 54
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=59.97 E-value=2.1 Score=21.85 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=16.0
Q ss_pred ccccccCCCcccccccce
Q 036272 251 ELCYSCDENYTVGHKCKK 268 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~ 268 (383)
..|-+|..-||...+|..
T Consensus 4 pYCe~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 4 PYCEICEMFGHWATNCND 21 (26)
T ss_dssp CEETTTTEESSCGGGCCT
T ss_pred ccchHHHHhCcccccCCc
Confidence 469999999999999964
No 55
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=55.76 E-value=21 Score=30.36 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=40.3
Q ss_pred hcccc--cccHhhHHHHHHHHHHH--hC-CCCHHHHHHHHHhhcchhHHhHccc----cCC-CCHHHHHHHH
Q 036272 126 CKLKQ--TGTVSDYQPQFERLLAR--AG-SLTDKQEAACFISGLKDGLRADVRA----QNP-QNLSAAIGLA 187 (383)
Q Consensus 126 ~~~~q--~~sv~~Y~~~f~~l~~~--~~-~~~e~~~~~~f~~gL~~~l~~~l~~----~~~-~~l~~~~~~a 187 (383)
..++| .|++++|+.||.+-.+. +. ...-......++..-+++-+..++. ..+ .+|+|.+..+
T Consensus 176 ~~IkQGPkEpf~dfVdRl~kalrae~~~~~~~~~~~~~~l~qnAnpdck~~lraal~pl~~~~tLee~m~aC 247 (262)
T 1d1d_A 176 ADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVLDR 247 (262)
T ss_dssp TSCCCCSSSCHHHHHHHHHHHHHTSSCCTTTTTHHHHHHHTTSSCHHHHHHHHTSCTTCCSTTHHHHHHHHH
T ss_pred hHhhhcCCCcHHHHHHHHHHHHHhhccCcccchhhHHHHHHHhcCHHHHHHHHHhhhcCCCCCCHHHHHHHH
Confidence 46788 89999999999998877 32 2222233334556667777666664 434 4677766544
No 56
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=51.44 E-value=36 Score=23.90 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=32.8
Q ss_pred CCCccCCCChHHHHHHHHHHHHHhCCchhhHHHHhhhhccc
Q 036272 44 FPCYDGSEDPTLWICRAEQFFEFQGTSLENQVKLAAYHLEN 84 (383)
Q Consensus 44 ~p~F~G~~d~~~w~~~~e~~~~~~~~~d~~k~~~~~~~L~g 84 (383)
.|.|.|.....+....++.+......|...-+.++..||..
T Consensus 2 ~P~~~g~t~l~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~ 42 (97)
T 4fjo_A 2 APNLAGAVEFSDVKTLLKEWITTISDPMEEDILQVVRYCTD 42 (97)
T ss_dssp CCCBTTBCSHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred CCcccCCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 68999988888888888888887777877777777777743
No 57
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=50.95 E-value=11 Score=33.12 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=23.7
Q ss_pred ceEEEEEEcCeEEEEEeeCCCcchhccH
Q 036272 306 TMRVHSQISKIPLTILIDSGSTHNYLHH 333 (383)
Q Consensus 306 ~~~~~~~i~~~~v~~LiDsGAt~s~Is~ 333 (383)
...+.+.|+.+++.++|||||+...|..
T Consensus 16 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~ 43 (323)
T 1bxo_A 16 EYITPVTIGGTTLNLNFDTGSADLWVFS 43 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEec
Confidence 4567788888999999999999998854
No 58
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=50.33 E-value=12 Score=33.03 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=24.0
Q ss_pred ceEEEEEEcCeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQISKIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+.+++.++|||||+...|...
T Consensus 16 ~Y~~~i~iG~q~~~v~~DTGSs~lWv~~~ 44 (323)
T 1izd_A 16 EYITQVTVGDDTLGLDFDTGSADLWVFSS 44 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECBT
T ss_pred EEEEEEEECCEEEEEEEcCCCcceEEecC
Confidence 45677788889999999999999988643
No 59
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=50.15 E-value=12 Score=33.13 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=24.1
Q ss_pred ceEEEEEEcCeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQISKIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+.+++.++|||||+...|...
T Consensus 18 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~ 46 (330)
T 1yg9_A 18 QYAGITKIGNQNFLTVFDSTSCNVVVASQ 46 (330)
T ss_dssp TSEEEEEETTEEEEEEEETTCCCEEEECT
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEecC
Confidence 45667788889999999999999988644
No 60
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=50.12 E-value=12 Score=32.95 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=24.1
Q ss_pred ceEEEEEEcCeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQISKIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+.+++.++|||||+...|...
T Consensus 15 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~ 43 (325)
T 1ibq_A 15 EYLTPVTVGKSTLHLDFDTGSADLWVFSD 43 (325)
T ss_dssp CEEEEEEEBTEEEEEEEETTCCCEEEECT
T ss_pred EEEEEEEECCEEEEEEEeCCCccceEeeC
Confidence 45677788889999999999999988643
No 61
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=50.12 E-value=13 Score=31.20 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=22.4
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhcc
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLH 332 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is 332 (383)
...+.+.|+ .+++.++|||||+...|.
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~ 42 (239)
T 1b5f_A 14 SYFGEIGIGTPPQKFTVIFDTGSSVLWVP 42 (239)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEE
Confidence 455677787 689999999999999885
No 62
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=47.12 E-value=14 Score=32.45 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=23.9
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+ .+++.++|||||+...|...
T Consensus 16 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~ 46 (325)
T 2apr_A 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIAST 46 (325)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCCEEEBT
T ss_pred EEEEEEEECCCCeEEEEEEcCCCCCEEEccC
Confidence 456777888 78999999999999988643
No 63
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=46.28 E-value=14 Score=30.89 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=20.2
Q ss_pred EEEEeeCCCcchhccHHHHHHhC
Q 036272 318 LTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 318 v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
..++||||.+..++....++.+.
T Consensus 211 ~~aiiDTGTt~~~lP~~~~~~i~ 233 (239)
T 1b5f_A 211 CQAFADSGTSLLSGPTAIVTQIN 233 (239)
T ss_dssp EEEEECTTCSSEEECHHHHHHHH
T ss_pred CEEEEecCcchhhCCHHHHHHHH
Confidence 57999999999999999888753
No 64
>1eia_A EIAV capsid protein P26; viral capsid, HIV, lentivirus, viral protein; 2.70A {Equine infectious anemia virus} SCOP: a.28.3.1 a.73.1.1 PDB: 2eia_A
Probab=45.55 E-value=45 Score=27.16 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=43.7
Q ss_pred hhcccc--cccHhhHHHHHHHHHHHhCCC---CHHHHHHHHHhhcchhHHhHccccCC-CCHHHHHHH
Q 036272 125 LCKLKQ--TGTVSDYQPQFERLLARAGSL---TDKQEAACFISGLKDGLRADVRAQNP-QNLSAAIGL 186 (383)
Q Consensus 125 l~~~~q--~~sv~~Y~~~f~~l~~~~~~~---~e~~~~~~f~~gL~~~l~~~l~~~~~-~~l~~~~~~ 186 (383)
+..++| .|.+++|+.+|.........- ..-......+.+.+++.+..+....+ .+|.+.+..
T Consensus 135 ~~~IkQGpKEPf~dfVdR~~k~l~~e~~~~~vK~~mt~tL~~qNANpdCk~ilk~lg~~~tLee~~~a 202 (207)
T 1eia_A 135 AQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRHLRPEDTLEEKMYA 202 (207)
T ss_dssp GGGCCCCTTCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHTSCHHHHHHTTTCCTTSCHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHhcCHHHHHHHHhhCCCCCHHHHHHH
Confidence 346788 799999999999887765321 12245556677889999998886654 477776553
No 65
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=44.65 E-value=16 Score=32.28 Aligned_cols=68 Identities=24% Similarity=0.283 Sum_probs=41.0
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHHHHHHhCCcccc----CCceEEEEeCCCeEecCceeeceEEEecCeeeee
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHRFAKITRIKPER----SCLFSVVVANGERLSSPGRCKGVRLTLQDVPIEN 379 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~~~~~l~l~~~~----~~~~~v~~~~g~~~~~~~~~~~~~v~i~~~~~~~ 379 (383)
...+.+.|+ .+++.++|||||+...|... .... +... .....+..++|. ..|....=.|.+++.++.+
T Consensus 13 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~-~s~Ss~~~~~~~~i~Yg~Gs---~~G~~~~Dtv~~g~~~v~~ 86 (340)
T 1wkr_A 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYV-KTSTSSATSDKVSVTYGSGS---FSGTEYTDTVTLGSLTIPK 86 (340)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCC-CCTTCEEEEEEEEEECSSCE---EEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCChhheecCC--CccC-CcCCccccCceEEEEECCcE---EEEEEEEEEEEECCEEEcc
Confidence 456777887 78999999999999988642 1111 1110 012344445664 3466666667777665543
No 66
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=43.78 E-value=17 Score=32.05 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=23.8
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+ .+++.++|||||+...|...
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 46 (329)
T 1oew_A 16 AYITPVQIGTPAQTLNLDFDTGSSDLWVFSS 46 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECBT
T ss_pred EEEEEEEECCCCeEEEEEECCCCCCeEEecC
Confidence 456677787 78999999999999988643
No 67
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=43.14 E-value=18 Score=31.94 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=23.3
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHH 333 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~ 333 (383)
...+.+.|+ .+++.++|||||+...|..
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 45 (329)
T 3c9x_A 16 EYITSVSIGTPAQVLPLDFDTGSSDLWVFS 45 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEEcCCCCCeEEec
Confidence 456677787 7899999999999998864
No 68
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=42.50 E-value=18 Score=32.27 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=23.9
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+ .+++.++|||||+...|...
T Consensus 19 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPHK 49 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCCEEEBT
T ss_pred EEEEEEEECCCCcEEEEEEcCCCCCeEECCC
Confidence 456677787 78999999999999988654
No 69
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=42.20 E-value=18 Score=31.98 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.6
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhcc
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLH 332 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is 332 (383)
...+.+.|+ .+++.++|||||+...|.
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (342)
T 2qzx_A 13 TYTADITVGSDNQKLNVIVDTGSSDLWIP 41 (342)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEe
Confidence 455677787 789999999999999884
No 70
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=41.75 E-value=19 Score=31.78 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=22.6
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhcc
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLH 332 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is 332 (383)
...+.+.|+ .+++.++|||||+...|.
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (334)
T 1j71_A 13 SYAADIVVGSNQQKQTVVIDTGSSDLWVV 41 (334)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEcCCCCCEEEe
Confidence 456677787 789999999999999984
No 71
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=40.92 E-value=20 Score=31.54 Aligned_cols=28 Identities=11% Similarity=0.317 Sum_probs=22.8
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHH 333 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~ 333 (383)
...+.+.|+ .+++.++|||||+...|..
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~ 43 (329)
T 1dpj_A 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPS 43 (329)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCcEEEEEEeCCCcCeEEec
Confidence 355677787 6899999999999998854
No 72
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=39.61 E-value=21 Score=31.46 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.7
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhcc
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLH 332 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is 332 (383)
...+.+.|+ .+++.++|||||+...|.
T Consensus 13 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~ 41 (339)
T 3fv3_A 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVV 41 (339)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCCceEEe
Confidence 466777787 689999999999999985
No 73
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=39.26 E-value=21 Score=32.33 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=23.8
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+ .+++.++|||||+...|...
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 52 (395)
T 2qp8_A 22 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAA 52 (395)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECS
T ss_pred eEEEEEEecCCCceEEEEEecCCCceEEECC
Confidence 356677887 78999999999999998643
No 74
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=38.31 E-value=23 Score=30.91 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=41.3
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHH-----HHHHhCC--ccccC------CceEEEEeCCCeEecCceeeceEE
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHR-----FAKITRI--KPERS------CLFSVVVANGERLSSPGRCKGVRL 370 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~-----~~~~l~l--~~~~~------~~~~v~~~~g~~~~~~~~~~~~~v 370 (383)
...+.+.|+ .+++.++|||||+...|... .+...+. +.... ....+..++|. ..|....=.|
T Consensus 12 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs---~~G~~~~D~v 88 (320)
T 4aa9_A 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS---MEGFLGYDTV 88 (320)
T ss_dssp CCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE---EEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE---EEEEEEEEEE
Confidence 356677787 58999999999999998642 1222221 11111 12334445554 2566555666
Q ss_pred EecCeeeee
Q 036272 371 TLQDVPIEN 379 (383)
Q Consensus 371 ~i~~~~~~~ 379 (383)
.+++.++.+
T Consensus 89 ~ig~~~v~~ 97 (320)
T 4aa9_A 89 TVSNIVDPN 97 (320)
T ss_dssp EETTEEEEE
T ss_pred EECCEeecC
Confidence 777766554
No 75
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=38.25 E-value=10 Score=23.49 Aligned_cols=9 Identities=33% Similarity=0.796 Sum_probs=7.6
Q ss_pred ccccccCCC
Q 036272 251 ELCYSCDEN 259 (383)
Q Consensus 251 ~~Cf~C~~~ 259 (383)
.+||.||+.
T Consensus 4 VRCFTCGkv 12 (55)
T 1ef4_A 4 VRCLSCGKP 12 (55)
T ss_dssp SSCSCTTSC
T ss_pred eecCCCCCC
Confidence 579999984
No 76
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=38.03 E-value=26 Score=30.70 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=19.3
Q ss_pred EEEEeeCCCcchhccHHHHHHh
Q 036272 318 LTILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 318 v~~LiDsGAt~s~Is~~~~~~l 339 (383)
..++||||++..++....++.+
T Consensus 211 ~~aiiDSGTt~~~lP~~~~~~l 232 (323)
T 3cms_A 211 CQAILDTGTSKLVGPSSDILNI 232 (323)
T ss_dssp EEEEECTTCCSEEECHHHHHHH
T ss_pred cEEEEecCCccEeCCHHHHHHH
Confidence 4799999999999999888765
No 77
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=37.93 E-value=24 Score=30.96 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=40.7
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHHH-----HHHhCC-ccccC-------CceEEEEeCCCeEecCceeeceEE
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHRF-----AKITRI-KPERS-------CLFSVVVANGERLSSPGRCKGVRL 370 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~~-----~~~l~l-~~~~~-------~~~~v~~~~g~~~~~~~~~~~~~v 370 (383)
...+.+.|+ .+++.++|||||+...|...- +...+. ..... ....+..++|. ..|....=.|
T Consensus 15 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs---~~G~~~~D~v 91 (323)
T 3cms_A 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS---MQGILGYDTV 91 (323)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE---EEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCC---eEEEEEEEEE
Confidence 455677777 589999999999999886432 122211 11111 12344445554 3466555566
Q ss_pred EecCeeeee
Q 036272 371 TLQDVPIEN 379 (383)
Q Consensus 371 ~i~~~~~~~ 379 (383)
.+++.++.+
T Consensus 92 ~ig~~~~~~ 100 (323)
T 3cms_A 92 TVSNIVDIQ 100 (323)
T ss_dssp EETTEEEEE
T ss_pred EECCeEEec
Confidence 677665543
No 78
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=37.50 E-value=21 Score=32.46 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=18.1
Q ss_pred EEeeCCCcchhccHHHHHHh
Q 036272 320 ILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 320 ~LiDsGAt~s~Is~~~~~~l 339 (383)
++||||.+.+++....++.+
T Consensus 262 aiiDSGTt~~~lp~~~~~~l 281 (403)
T 3aup_A 262 TMISTSTPHMVLQQSVYQAF 281 (403)
T ss_dssp EEECSSCSSEEECHHHHHHH
T ss_pred EEEECCCccEEeCHHHHHHH
Confidence 89999999999999888765
No 79
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=36.83 E-value=25 Score=31.02 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=22.5
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhcc
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLH 332 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is 332 (383)
...+.+.|+ .+++.++|||||+...|.
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (342)
T 3pvk_A 13 TYAADITVGSNNQKLNVIVDTGSSDLWVP 41 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEECCCcceEEE
Confidence 456777787 689999999999999884
No 80
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=36.72 E-value=25 Score=31.68 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.0
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHH 333 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~ 333 (383)
...+.+.|+ .+++.++|||||+...|..
T Consensus 14 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 43 (383)
T 2ewy_A 14 GYYLEMLIGTPPQKLQILVDTGSSNFAVAG 43 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred cEEEEEEecCCCceEEEEEecCCCceEEec
Confidence 356677787 6899999999999998854
No 81
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=36.70 E-value=25 Score=30.84 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=22.8
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHH 333 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~ 333 (383)
...+.+.|+ .+++.++|||||+...|..
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~ 42 (329)
T 1htr_B 13 AYFGEISIGTPPQNFLVLFDTGSSNLWVPS 42 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEec
Confidence 455677787 5899999999999998864
No 82
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=36.34 E-value=25 Score=31.96 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=23.5
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+ .+++.++|||||+...|...
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 52 (403)
T 3aup_A 22 LHWANLQKRTPLMQVPVLVDLNGNHLWVNCE 52 (403)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCSSEEEECS
T ss_pred eEEEEEECCCCCceeEEEEECCCCceeECCC
Confidence 466677787 68999999999999988643
No 83
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=36.33 E-value=28 Score=30.77 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=23.5
Q ss_pred EEEEcC-eE----EEEEeeCCCcchhccHHHHHHh
Q 036272 310 HSQISK-IP----LTILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 310 ~~~i~~-~~----v~~LiDsGAt~s~Is~~~~~~l 339 (383)
.+.+++ .. ..++||||.+..++....++.+
T Consensus 194 ~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l 228 (340)
T 1wkr_A 194 SIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKY 228 (340)
T ss_dssp EEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHH
T ss_pred eEEECCCeEccCCCeEEEeCCcccccCCHHHHHHH
Confidence 345665 43 3799999999999999988776
No 84
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=35.95 E-value=27 Score=30.62 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=22.5
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHH 333 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~ 333 (383)
...+.+.|+ .+++.++|||||+...|..
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 42 (324)
T 1am5_A 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSS 42 (324)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEec
Confidence 455667777 5899999999999998864
No 85
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=35.07 E-value=27 Score=31.68 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=23.4
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHH 333 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~ 333 (383)
...+.+.|+ .+++.++|||||+...|..
T Consensus 29 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 58 (402)
T 3vf3_A 29 GYYVEMTVGSPPQTLNILVDTGSSNFAVGA 58 (402)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred EEEEEEEECCCCeEEEEEEeCCCCceEEcc
Confidence 466777887 6899999999999998854
No 86
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=34.99 E-value=27 Score=32.43 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=23.7
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+ .+++.+++||||+...|...
T Consensus 139 ~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~ 169 (453)
T 2bju_A 139 MFYGDAEVGDNQQPFTFILDTGSANLWVPSV 169 (453)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred EEEEEEEECCCCeEEEEEEECCCcceEEecc
Confidence 456677787 78999999999999988654
No 87
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=34.89 E-value=21 Score=29.74 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=20.1
Q ss_pred EEEEEeeCCCcchhccHHHHHHh
Q 036272 317 PLTILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 317 ~v~~LiDsGAt~s~Is~~~~~~l 339 (383)
...++||||++..++....++.+
T Consensus 120 ~~~aiiDSGTt~~~lP~~~~~~l 142 (241)
T 1lya_B 120 GCEAIVDTGTSLMVGPVDEVREL 142 (241)
T ss_dssp CEEEEECTTCSSEEECHHHHHHH
T ss_pred CCEEEEECCCccccCCHHHHHHH
Confidence 35799999999999999988765
No 88
>1u7k_A GAG polyprotein; capsid, viral protein; 1.85A {Endogenous} SCOP: a.73.1.1 PDB: 2y4z_A 3bp9_A
Probab=34.80 E-value=40 Score=25.03 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCCCCCccCCCChHHHHHHHHHHHHHhCCchhhHHHHhhhhcccc
Q 036272 41 KLDFPCYDGSEDPTLWICRAEQFFEFQGTSLENQVKLAAYHLEND 85 (383)
Q Consensus 41 ~~~~p~F~G~~d~~~w~~~~e~~~~~~~~~d~~k~~~~~~~L~g~ 85 (383)
+...|.|+. ||..++.-||.++..++.+=.+-..++.+.|+.+
T Consensus 24 k~~~~sfse--dP~~~~~l~e~i~~th~pTW~D~qqLL~tLlT~E 66 (131)
T 1u7k_A 24 KNNNPSFSE--DPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGE 66 (131)
T ss_dssp HHTSCCTTT--CHHHHHHHHHHHHHHTCCCHHHHHHHHHHHSCHH
T ss_pred HHcCCCccc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCHH
Confidence 345677877 9999999999998877655444455555555554
No 89
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=34.30 E-value=12 Score=24.12 Aligned_cols=9 Identities=22% Similarity=0.814 Sum_probs=7.5
Q ss_pred ccccccCCC
Q 036272 251 ELCYSCDEN 259 (383)
Q Consensus 251 ~~Cf~C~~~ 259 (383)
.+||.||+.
T Consensus 5 VRCFTCGkv 13 (66)
T 4ayb_N 5 IRCFTCGSL 13 (66)
T ss_dssp SBCTTTCCB
T ss_pred cccCCCcHh
Confidence 579999984
No 90
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=34.26 E-value=21 Score=32.16 Aligned_cols=20 Identities=5% Similarity=0.056 Sum_probs=17.6
Q ss_pred EEeeCCCcchhccHHHHHHh
Q 036272 320 ILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 320 ~LiDsGAt~s~Is~~~~~~l 339 (383)
++||||.+.+++.+..++.+
T Consensus 232 ~iiDTGTtl~~lp~~~~~~l 251 (381)
T 1t6e_X 232 VMLSTRLPYVLLRPDVYRPL 251 (381)
T ss_dssp EEECSSCSSEEECHHHHHHH
T ss_pred EEEECCCccEEeCHHHHHHH
Confidence 89999999999999877744
No 91
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=34.01 E-value=27 Score=31.00 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=41.0
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHHHHH-----HhCC--cc-----c-cCCceEEEEeCCCeEecCceeeceEE
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHRFAK-----ITRI--KP-----E-RSCLFSVVVANGERLSSPGRCKGVRL 370 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~~~~-----~l~l--~~-----~-~~~~~~v~~~~g~~~~~~~~~~~~~v 370 (383)
...+.+.|+ .+++.++|||||+...|....+. ..+. +. . ......+..++|. ..|....=.|
T Consensus 24 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs---~~G~~~~D~v 100 (351)
T 1tzs_A 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS---LSGIIGADQV 100 (351)
T ss_dssp CCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCE---EEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCC---eEEEEEEeEE
Confidence 355667777 58999999999999988643221 1110 00 0 0123445556664 2466555566
Q ss_pred EecCeeeee
Q 036272 371 TLQDVPIEN 379 (383)
Q Consensus 371 ~i~~~~~~~ 379 (383)
.+++.++.+
T Consensus 101 ~ig~~~~~~ 109 (351)
T 1tzs_A 101 SVEGLTVVG 109 (351)
T ss_dssp EETTEEEEE
T ss_pred EECCeEECC
Confidence 667665543
No 92
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=33.84 E-value=30 Score=30.49 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=22.8
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHH 333 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~ 333 (383)
...+.+.|+ .+++.++|||||+...|..
T Consensus 19 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 48 (341)
T 3k1w_A 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPS 48 (341)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCcceEEcc
Confidence 456677787 4899999999999998853
No 93
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=33.23 E-value=34 Score=30.18 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=22.9
Q ss_pred EEEcCeE----EEEEeeCCCcchhccHHHHHHh
Q 036272 311 SQISKIP----LTILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 311 ~~i~~~~----v~~LiDsGAt~s~Is~~~~~~l 339 (383)
+.+++.. ..++||||++..++....++.+
T Consensus 202 i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l 234 (342)
T 2qzx_A 202 VNVRGRNVDANTNVLLDSGTTISYFTRSIVRNI 234 (342)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEecCCCcCEEEeCCCCCEEcCHHHHHHH
Confidence 4456543 4689999999999999988765
No 94
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=33.06 E-value=28 Score=30.63 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=20.0
Q ss_pred EEEEeeCCCcchhccHHHHHHhC
Q 036272 318 LTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 318 v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
..++||||++..++....++.+.
T Consensus 214 ~~aiiDSGTs~~~lP~~~~~~l~ 236 (330)
T 1yg9_A 214 TQAIIDTSKAIIVGPKAYVNPIN 236 (330)
T ss_dssp CEEEECTTCSSEEEEHHHHHHHH
T ss_pred cEEEEecCCccccCCHHHHHHHH
Confidence 47999999999999999887663
No 95
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=33.05 E-value=35 Score=29.93 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.4
Q ss_pred EEEEeeCCCcchhccHHHHHHh
Q 036272 318 LTILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 318 v~~LiDsGAt~s~Is~~~~~~l 339 (383)
..++||||++..++....++.+
T Consensus 213 ~~aiiDSGTt~~~lP~~~~~~l 234 (329)
T 1dpj_A 213 HGAAIDTGTSLITLPSGLAEMI 234 (329)
T ss_dssp CEEEECTTCSCEEECHHHHHHH
T ss_pred ccEEeeCCCCcEECCHHHHHHH
Confidence 3699999999999999988765
No 96
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=32.86 E-value=35 Score=30.38 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.1
Q ss_pred EEEE-eeCCCcchhccHHHHHHh
Q 036272 318 LTIL-IDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 318 v~~L-iDsGAt~s~Is~~~~~~l 339 (383)
..++ ||||++..++....++.+
T Consensus 231 ~~ai~iDSGTt~~~lP~~~~~~l 253 (361)
T 1mpp_A 231 AQAFTIDTGTNFFIAPSSFAEKV 253 (361)
T ss_dssp EEEEEEETTCCSEEEEHHHHHHH
T ss_pred CEEEEECCCCCceeCCHHHHHHH
Confidence 4689 999999999999888765
No 97
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=32.64 E-value=35 Score=30.02 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=23.5
Q ss_pred EEEcCeE-----EEEEeeCCCcchhccHHHHHHhC
Q 036272 311 SQISKIP-----LTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 311 ~~i~~~~-----v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
+.+++.. ..++||||.+..++....++.+.
T Consensus 201 i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~ 235 (342)
T 3pvk_A 201 VEVSGKTINTDNVDVLLDSGTTITYLQQDLADQII 235 (342)
T ss_dssp EEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHH
T ss_pred EEECCEEecCCCceEEEeCCCCCeecCHHHHHHHH
Confidence 3455543 57999999999999999887653
No 98
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=32.53 E-value=32 Score=31.09 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=23.1
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+ .+++.+++||||+...|...
T Consensus 62 ~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~ 92 (383)
T 2x0b_A 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS 92 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEecc
Confidence 455677777 58999999999999988643
No 99
>3h47_A Ca, capsid protein P24; hexamer, engineered disulfide bonds, viral protein; 1.90A {Human immunodeficiency virus type 1} PDB: 3h4e_A 2lf4_A 3mge_A 3p05_A 3p0a_A 3dik_A 3nte_A 1e6j_P
Probab=32.48 E-value=67 Score=26.65 Aligned_cols=62 Identities=11% Similarity=0.216 Sum_probs=38.9
Q ss_pred hcccc--cccHhhHHHHHHHHHHHhC---CCCHHHHHHHHHhhcchhHHhHccccC-CCCHHHHHHHH
Q 036272 126 CKLKQ--TGTVSDYQPQFERLLARAG---SLTDKQEAACFISGLKDGLRADVRAQN-PQNLSAAIGLA 187 (383)
Q Consensus 126 ~~~~q--~~sv~~Y~~~f~~l~~~~~---~~~e~~~~~~f~~gL~~~l~~~l~~~~-~~~l~~~~~~a 187 (383)
..++| +|.+++|+.+|........ ....-....+.+.+-+++-+..+.... -.+|++.+..+
T Consensus 151 ~~IkQGpkEPf~DfV~Rl~kal~~e~~~~~vK~~m~~tL~~qNANp~Ck~ilk~l~~~a~Lee~i~aC 218 (231)
T 3h47_A 151 LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTAC 218 (231)
T ss_dssp GGCCCCTTCCHHHHHHHHHHHHHHC------------CHHHHTSCHHHHHHHHHHCTTCCHHHHHHHT
T ss_pred hhhccCCCCcHHHHHHHHHHHHHhhcccchhhhHhHHhHHhhccCHHHHHHHhccCCCCCHHHHHHHc
Confidence 45788 8999999999998876542 112223444556677888777776443 45777777654
No 100
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=32.43 E-value=31 Score=32.03 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=23.5
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~ 334 (383)
...+.+.|+ .+++.+++||||+...|...
T Consensus 138 ~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~ 168 (451)
T 3qvc_A 138 LSFGEAKLGDNGQKFNFLFHTASSNVWVPSI 168 (451)
T ss_dssp EEEEEEEETTTTEEEEEEEESSBCSEEEEBT
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEecC
Confidence 356677787 68999999999999988753
No 101
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=32.25 E-value=65 Score=28.11 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=20.9
Q ss_pred EEEEEeeCCCcchhccHH----HHHHhCC
Q 036272 317 PLTILIDSGSTHNYLHHR----FAKITRI 341 (383)
Q Consensus 317 ~v~~LiDsGAt~s~Is~~----~~~~l~l 341 (383)
...++||||++..++... +++.+..
T Consensus 212 ~~~~iiDSGTs~~~lP~~~~~~~~~~~~~ 240 (325)
T 2apr_A 212 SFDGILDTGTTLLILPNNIAASVARAYGA 240 (325)
T ss_dssp CEEEEECTTCSSEEEEHHHHHHHHHHHTC
T ss_pred CceEEEecCCccEECCHHHHHHHHHHHhc
Confidence 457999999999999999 6676654
No 102
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=32.25 E-value=36 Score=30.18 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=22.8
Q ss_pred EEEcCeE------EEEEeeCCCcchhccHHHHHHh
Q 036272 311 SQISKIP------LTILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 311 ~~i~~~~------v~~LiDsGAt~s~Is~~~~~~l 339 (383)
+.+++.. ..++||||++..++....++.+
T Consensus 210 i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l 244 (351)
T 1tzs_A 210 IQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQL 244 (351)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCceEEcCCCceEEeccCCcceeCCHHHHHHH
Confidence 3455544 4799999999999999988765
No 103
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=32.16 E-value=24 Score=31.81 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.5
Q ss_pred EEEeeCCCcchhccHHHHHHh
Q 036272 319 TILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 319 ~~LiDsGAt~s~Is~~~~~~l 339 (383)
.++||||.+..++....++.+
T Consensus 222 ~aiiDSGTt~~~lP~~~~~~l 242 (383)
T 2ewy_A 222 KAIVDSGTTLLRLPQKVFDAV 242 (383)
T ss_dssp CEEECTTCSSEEEEHHHHHHH
T ss_pred cEEEEcCCccccCCHHHHHHH
Confidence 699999999999999887765
No 104
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=31.85 E-value=48 Score=29.74 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=23.9
Q ss_pred EEEcCe---EEEEEeeCCCcchhccHHHHHHh
Q 036272 311 SQISKI---PLTILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 311 ~~i~~~---~v~~LiDsGAt~s~Is~~~~~~l 339 (383)
+.+++. ...++||||.+..++....++.+
T Consensus 247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l 278 (375)
T 1miq_A 247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKF 278 (375)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHH
T ss_pred EEECCEEcccceEEecCCCccEEcCHHHHHHH
Confidence 667774 45899999999999999888765
No 105
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=31.64 E-value=33 Score=31.80 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=23.2
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccH
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHH 333 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~ 333 (383)
...+.+.|+ .+++.++|||||+...|..
T Consensus 75 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~ 104 (455)
T 3lpj_A 75 GYYVEMTVGSPPQTLNILVDTGSSNFAVGA 104 (455)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEec
Confidence 466777887 6899999999999988854
No 106
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=31.49 E-value=38 Score=29.51 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=20.0
Q ss_pred EEEEeeCCCcchhccHHHHHHhC
Q 036272 318 LTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 318 v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
..++||||.+..++....++.+.
T Consensus 208 ~~~iiDsGtt~~~lP~~~~~~i~ 230 (320)
T 4aa9_A 208 CQAILDTGTSVLFGPSSDILKIQ 230 (320)
T ss_dssp EEEEECTTCSSEEEEHHHHHHHH
T ss_pred cEEEEECCCCcEECCHHHHHHHH
Confidence 47999999999999999887653
No 107
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=31.25 E-value=34 Score=30.08 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=23.2
Q ss_pred EEEcCeE----EEEEeeCCCcchhccHHHHHHhC
Q 036272 311 SQISKIP----LTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 311 ~~i~~~~----v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
+.+++.. ..++||||.+..++....++.+.
T Consensus 204 i~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~ 237 (339)
T 3fv3_A 204 VNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLA 237 (339)
T ss_dssp EEESSCEEEEEEEEEECTTBSSEEECHHHHHHHH
T ss_pred EEECCEeecCCccEEEeCCCCCEecCHHHHHHHH
Confidence 3455543 35999999999999999887753
No 108
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=31.11 E-value=39 Score=29.69 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=22.7
Q ss_pred EEEcCeE----EEEEeeCCCcchhccHHHHHHh
Q 036272 311 SQISKIP----LTILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 311 ~~i~~~~----v~~LiDsGAt~s~Is~~~~~~l 339 (383)
+.+++.. ..++||||++..++....++.+
T Consensus 202 i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l 234 (334)
T 1j71_A 202 INFDGTSVSTNADVVLDSGTTITYFSQSTADKF 234 (334)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEeccCCccEEEeCCCCcEecCHHHHHHH
Confidence 3455543 4689999999999999988765
No 109
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=30.33 E-value=37 Score=30.47 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=40.9
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHHHHH-----HhCC-ccccC-------CceEEEEeCCCeEecCceeeceEE
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHRFAK-----ITRI-KPERS-------CLFSVVVANGERLSSPGRCKGVRL 370 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~~~~-----~l~l-~~~~~-------~~~~v~~~~g~~~~~~~~~~~~~v 370 (383)
...+.+.|+ .+++.+++||||+...|....+. ..+. ..... ....+..++|. ..|....=.|
T Consensus 57 ~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs---~~G~~~~Dtv 133 (370)
T 3psg_A 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS---MTGILGYDTV 133 (370)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE---EEEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCce---EEEEEEEEEE
Confidence 356677787 48999999999999888643221 1111 00011 12333445554 3566555566
Q ss_pred EecCeeeee
Q 036272 371 TLQDVPIEN 379 (383)
Q Consensus 371 ~i~~~~~~~ 379 (383)
.+++.++.+
T Consensus 134 ~ig~~~v~~ 142 (370)
T 3psg_A 134 QVGGISDTN 142 (370)
T ss_dssp EETTEEEEE
T ss_pred eeCCcccCC
Confidence 777766554
No 110
>3tir_A ROUS sarcoma virus capsid protein P27; viral capsid protein, viral protein; 4.10A {Rous sarcoma virus} PDB: 2x8q_A
Probab=29.94 E-value=1.2e+02 Score=24.97 Aligned_cols=63 Identities=10% Similarity=0.159 Sum_probs=41.5
Q ss_pred hhcccc--cccHhhHHHHHHHHHHHhCCC---CHHHHHHHHHhhcchhHHhHccccC-CCCH-HHHHHHH
Q 036272 125 LCKLKQ--TGTVSDYQPQFERLLARAGSL---TDKQEAACFISGLKDGLRADVRAQN-PQNL-SAAIGLA 187 (383)
Q Consensus 125 l~~~~q--~~sv~~Y~~~f~~l~~~~~~~---~e~~~~~~f~~gL~~~l~~~l~~~~-~~~l-~~~~~~a 187 (383)
+..++| +|++.+|+.+|..-......- .+......++.+-+++-+..+.... -..+ .|++.-.
T Consensus 153 ~~~I~QGp~Epf~dfv~rl~~a~~~~~~~~~~~~~~~~~l~~qNAN~~ck~il~~~~~~~~~~~e~i~~~ 222 (226)
T 3tir_A 153 WADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYV 222 (226)
T ss_dssp GGGCCCCTTCCHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSCHHHHHHHHTSCTTCCSHHHHHHHH
T ss_pred hhHhhcCCCCcHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCHHHHHHHHhCCCCCCChHHHHHHH
Confidence 346788 899999999999887775321 1224555666777777777766432 3344 7776644
No 111
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=29.15 E-value=64 Score=29.41 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=22.4
Q ss_pred cceEEEEEEcC--eEEEEEeeCCCcchhcc
Q 036272 305 HTMRVHSQISK--IPLTILIDSGSTHNYLH 332 (383)
Q Consensus 305 ~~~~~~~~i~~--~~v~~LiDsGAt~s~Is 332 (383)
....+.+.|+. +++.++|||||+...|.
T Consensus 20 ~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~ 49 (413)
T 3vla_A 20 LQYVTTINQRTPLVSENLVVDLGGRFLWVD 49 (413)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCSSEEEE
T ss_pred CeEEEEEEcCCCCcceEEEEeCCChhhhcc
Confidence 35667777775 78999999999988875
No 112
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=28.95 E-value=29 Score=31.43 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.4
Q ss_pred EEEeeCCCcchhccHHHHHHh
Q 036272 319 TILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 319 ~~LiDsGAt~s~Is~~~~~~l 339 (383)
.++||||.+..++....++.+
T Consensus 233 ~aiiDSGTt~~~lP~~~~~~l 253 (395)
T 2qp8_A 233 KSIVDSGTTNLRLPKKVFEAA 253 (395)
T ss_dssp CEEECTTCCSEEEEHHHHHHH
T ss_pred eEEEEcCCCcEecCHHHHHHH
Confidence 589999999999999887754
No 113
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=28.84 E-value=45 Score=29.31 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=19.9
Q ss_pred EEEEEeeCCCcchhccHHHHHHh
Q 036272 317 PLTILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 317 ~v~~LiDsGAt~s~Is~~~~~~l 339 (383)
...++||||.+..++....++.+
T Consensus 220 ~~~~iiDsGtt~~~lP~~~~~~i 242 (341)
T 3k1w_A 220 GCLALVDTGASYISGSTSSIEKL 242 (341)
T ss_dssp CEEEEECTTCSSEEECHHHHHHH
T ss_pred CCEEEEECCCChhcCCHHHHHHH
Confidence 35799999999999999888765
No 114
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=28.54 E-value=41 Score=31.45 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=41.2
Q ss_pred ceEEEEEEc--CeEEEEEeeCCCcchhccHHHH------HHhCC-c-cc-----cC-CceEEEEeCCCeEecCceeeceE
Q 036272 306 TMRVHSQIS--KIPLTILIDSGSTHNYLHHRFA------KITRI-K-PE-----RS-CLFSVVVANGERLSSPGRCKGVR 369 (383)
Q Consensus 306 ~~~~~~~i~--~~~v~~LiDsGAt~s~Is~~~~------~~l~l-~-~~-----~~-~~~~v~~~~g~~~~~~~~~~~~~ 369 (383)
...+.+.|+ .+++.++|||||+...|...-. ...+. . .. .. ....+..++|. ..|....=.
T Consensus 53 ~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs---~~G~~~~Dt 129 (478)
T 1qdm_A 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS---IAGYFSEDS 129 (478)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEE---EEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCC---eEEEEEEEE
Confidence 456677787 6899999999999998854321 11110 0 00 01 13445555664 346655556
Q ss_pred EEecCeeeee
Q 036272 370 LTLQDVPIEN 379 (383)
Q Consensus 370 v~i~~~~~~~ 379 (383)
|.+++.++.+
T Consensus 130 v~ig~~~v~~ 139 (478)
T 1qdm_A 130 VTVGDLVVKD 139 (478)
T ss_dssp EEETTEEEEE
T ss_pred EEECCeEECC
Confidence 6777665543
No 115
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=28.25 E-value=35 Score=29.87 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCcchhccHHHHHHhC
Q 036272 316 IPLTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 316 ~~v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
....++||||.+..++....++.+.
T Consensus 206 ~~~~aiiDSGTs~~~lP~~~~~~l~ 230 (323)
T 1bxo_A 206 DGFSGIADTGTTLLLLDDSVVSQYY 230 (323)
T ss_dssp EEEEEEECTTCSSEEECHHHHHHHH
T ss_pred CCceEEEeCCCCceeCCHHHHHHHH
Confidence 3467999999999999999988764
No 116
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=28.06 E-value=14 Score=21.23 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=15.8
Q ss_pred CccccccCCCcccccccc
Q 036272 250 QELCYSCDENYTVGHKCK 267 (383)
Q Consensus 250 ~~~Cf~C~~~GH~a~~Cp 267 (383)
...|-+|.--||...+|+
T Consensus 20 RpYCd~CEvFGH~t~~Cn 37 (42)
T 2pzo_E 20 RPYCEICEMFGHWATNCN 37 (42)
T ss_dssp -CEETTTTEESSCGGGCC
T ss_pred CcccccccccCcccccCC
Confidence 357999999999999996
No 117
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=27.92 E-value=30 Score=30.27 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=19.1
Q ss_pred EEEEeeCCCcchhccHHHHHHh
Q 036272 318 LTILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 318 v~~LiDsGAt~s~Is~~~~~~l 339 (383)
..++||||++..++....++.+
T Consensus 209 ~~aiiDSGTt~~~lp~~~~~~l 230 (324)
T 1am5_A 209 CQAIVDTGTSKIVAPVSALANI 230 (324)
T ss_dssp EEEEECTTCSSEEECTTTHHHH
T ss_pred ceEEEecCCccEECCHHHHHHH
Confidence 6799999999999998877665
No 118
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=27.65 E-value=36 Score=29.83 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCcchhccHHHHHHhC
Q 036272 316 IPLTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 316 ~~v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
....++||||.+..++....++.+.
T Consensus 207 ~~~~aiiDSGTs~~~lp~~~~~~i~ 231 (323)
T 1izd_A 207 DSITGIADTGTTLLLLDDSIVDAYY 231 (323)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHH
T ss_pred CCceEEEeCCCcceeCCHHHHHHHH
Confidence 3467999999999999999998764
No 119
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=27.09 E-value=19 Score=23.53 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=7.9
Q ss_pred CccccccCCC
Q 036272 250 QELCYSCDEN 259 (383)
Q Consensus 250 ~~~Cf~C~~~ 259 (383)
+.+||.||+.
T Consensus 4 PVRCFTCGkv 13 (70)
T 1twf_J 4 PVRCFSCGKV 13 (70)
T ss_dssp CSBCTTTCCB
T ss_pred CeecCCCCCC
Confidence 3579999984
No 120
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=26.87 E-value=27 Score=24.72 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.3
Q ss_pred CccccccCCCc---ccccccce
Q 036272 250 QELCYSCDENY---TVGHKCKK 268 (383)
Q Consensus 250 ~~~Cf~C~~~G---H~a~~Cp~ 268 (383)
...|-.||..| |..+-||.
T Consensus 71 ~Y~CpiCGATGd~AHT~kYCP~ 92 (106)
T 3alr_A 71 QYKCPLCGATGAKAHTKRFCPM 92 (106)
T ss_dssp GCCCTTTCCCGGGCCCGGGCTT
T ss_pred cccCCCCCCcCCcccceecCCC
Confidence 36799999999 88889995
No 121
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=26.77 E-value=33 Score=31.08 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEeeCCCcchhccHHHHHHh
Q 036272 319 TILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 319 ~~LiDsGAt~s~Is~~~~~~l 339 (383)
.++||||++..++....++.+
T Consensus 240 ~aiiDSGTt~~~lP~~~~~~i 260 (402)
T 3vf3_A 240 KSIVDSGTTNLRLPKKVFEAA 260 (402)
T ss_dssp CEEECTTCCSEEEEHHHHHHH
T ss_pred eEEEECCCCcccCCHHHHHHH
Confidence 599999999999998888765
No 122
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=26.45 E-value=1.4e+02 Score=19.56 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=26.9
Q ss_pred CCCccCCCChHHHHHHHHHHHHHhCCchhhHHHHhhhhc---ccchhhHHHHhh
Q 036272 44 FPCYDGSEDPTLWICRAEQFFEFQGTSLENQVKLAAYHL---ENDAQLWFQQRK 94 (383)
Q Consensus 44 ~p~F~G~~d~~~w~~~~e~~~~~~~~~d~~k~~~~~~~L---~g~A~~w~~~~~ 94 (383)
-..|+.. =+..+|.+|.....++......|...| ......||+.-+
T Consensus 21 Rt~ft~~-----Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR 69 (80)
T 2da3_A 21 RTTITPE-----QLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTR 69 (80)
T ss_dssp CSSCCTT-----THHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHH-----HHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHH
Confidence 3457763 245667788877777655444444333 444677887643
No 123
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=26.25 E-value=42 Score=30.63 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=17.7
Q ss_pred EEEeeCCCcchhccHHHHHHh
Q 036272 319 TILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 319 ~~LiDsGAt~s~Is~~~~~~l 339 (383)
.++||||.+.+++....++.|
T Consensus 267 ~aIiDSGTslt~lp~~~y~~l 287 (413)
T 3vla_A 267 GTKISTINPYTVLETSIYKAV 287 (413)
T ss_dssp CEEECSSSSSEEEEHHHHHHH
T ss_pred CEEEECCCCcEEcCHHHHHHH
Confidence 489999999999998876554
No 124
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.62 E-value=14 Score=24.97 Aligned_cols=17 Identities=29% Similarity=0.858 Sum_probs=14.8
Q ss_pred ccccccCCCcccccccce
Q 036272 251 ELCYSCDENYTVGHKCKK 268 (383)
Q Consensus 251 ~~Cf~C~~~GH~a~~Cp~ 268 (383)
..||+|++.+|- ..|..
T Consensus 59 ~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 59 AFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CEETTTTEECCS-SCSSS
T ss_pred eeccccCccccC-Ccccc
Confidence 469999999999 99964
No 125
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=25.17 E-value=37 Score=31.44 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.4
Q ss_pred EEEeeCCCcchhccHHHHHHh
Q 036272 319 TILIDSGSTHNYLHHRFAKIT 339 (383)
Q Consensus 319 ~~LiDsGAt~s~Is~~~~~~l 339 (383)
.++||||.+..++....++.+
T Consensus 286 ~aiiDSGTt~~~lP~~~~~~i 306 (455)
T 3lpj_A 286 KSIVDSGTTNLRLPKKVFEAA 306 (455)
T ss_dssp CEEECTTSSSEEEEHHHHHHH
T ss_pred eEEEECCCcceeCCHHHHHHH
Confidence 499999999999998887764
No 126
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=25.15 E-value=37 Score=29.74 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred EEEEEeeCCCcchhccHHHHHHhC
Q 036272 317 PLTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 317 ~v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
...++||||++..++....++.+.
T Consensus 208 ~~~aiiDSGTt~~~lP~~~~~~i~ 231 (325)
T 1ibq_A 208 GFSAIADTGTTLILLDDEIVSAYY 231 (325)
T ss_dssp CEEEEECTTCCSEEECHHHHHHHH
T ss_pred CceEEEeCCCCcEeCCHHHHHHHH
Confidence 468999999999999999988764
No 127
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=24.91 E-value=40 Score=29.54 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.2
Q ss_pred EEEEEeeCCCcchhccHHHHHHhC
Q 036272 317 PLTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 317 ~v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
...++||||.+..++....++.+.
T Consensus 212 ~~~aiiDSGTt~~~lP~~~~~~l~ 235 (329)
T 1oew_A 212 SIDGIADTGTTLLYLPATVVSAYW 235 (329)
T ss_dssp EEEEEECTTCCSEEECHHHHHHHH
T ss_pred CceEEEeCCCCCEECCHHHHHHHH
Confidence 457999999999999999998764
No 128
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=24.88 E-value=47 Score=29.97 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=20.0
Q ss_pred EEEEeeCCCcchhccHHHHHHhC
Q 036272 318 LTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 318 v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
..++||||.+..++....++.+.
T Consensus 264 ~~aiiDTGTs~~~lP~~~~~~i~ 286 (383)
T 2x0b_A 264 CLALVDTGASYISGSTSSIEKLM 286 (383)
T ss_dssp EEEEECTTCSSEEECHHHHHHHH
T ss_pred cEEEEcCCCceEEcCHHHHHHHH
Confidence 68999999999999998887653
No 129
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=24.20 E-value=22 Score=32.10 Aligned_cols=28 Identities=11% Similarity=0.355 Sum_probs=21.5
Q ss_pred eEEEEEEc--CeEEEEEeeCCCcchhccHH
Q 036272 307 MRVHSQIS--KIPLTILIDSGSTHNYLHHR 334 (383)
Q Consensus 307 ~~~~~~i~--~~~v~~LiDsGAt~s~Is~~ 334 (383)
..+.+.|+ .+++.++|||||+...|...
T Consensus 64 Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 93 (375)
T 1miq_A 64 FYGEGEVGDNHQKFMLIFDTGSANLWVPSK 93 (375)
T ss_dssp EECCCEETTTTEECCEEEETTCCCEEEEBT
T ss_pred EEEEEEECCCCeEEEEEEeCCCcceEEccC
Confidence 44455666 68889999999999988644
No 130
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=23.43 E-value=1.7e+02 Score=19.42 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCchhhHHHHhhhhc---ccchhhHHHHhh
Q 036272 55 LWICRAEQFFEFQGTSLENQVKLAAYHL---ENDAQLWFQQRK 94 (383)
Q Consensus 55 ~w~~~~e~~~~~~~~~d~~k~~~~~~~L---~g~A~~w~~~~~ 94 (383)
.=+..+|.+|.....++......|...| ......||+.-+
T Consensus 32 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR 74 (84)
T 2kt0_A 32 TQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQR 74 (84)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4566788888888777655444444333 444677887754
No 131
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=23.28 E-value=42 Score=29.43 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred EEEEEeeCCCcchhccHHHHHHhC
Q 036272 317 PLTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 317 ~v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
...++||||.+..++....++.+.
T Consensus 213 ~~~aiiDSGTt~~~lp~~~~~~i~ 236 (329)
T 3c9x_A 213 SIDGIADTGTTLLLLDDNVVDAYY 236 (329)
T ss_dssp CEEEEECTTCCSEEECHHHHHHHH
T ss_pred CceEEEECCCCcEeCCHHHHHHHH
Confidence 468999999999999999988764
No 132
>3gv2_A Ca, fusion protein consisting of capsid protein P24, carbon dioxide-concentrating mechanism...; hexameric retroviral capsid; 7.00A {Human immunodeficiency virus type 1}
Probab=22.95 E-value=1.5e+02 Score=26.22 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=41.5
Q ss_pred hcccc--cccHhhHHHHHHHHHHHhCCCCHH----HHHHHHHhhcchhHHhHccccC-CCCHHHHHHHH
Q 036272 126 CKLKQ--TGTVSDYQPQFERLLARAGSLTDK----QEAACFISGLKDGLRADVRAQN-PQNLSAAIGLA 187 (383)
Q Consensus 126 ~~~~q--~~sv~~Y~~~f~~l~~~~~~~~e~----~~~~~f~~gL~~~l~~~l~~~~-~~~l~~~~~~a 187 (383)
..++| +|++++|+.+|........ .+.+ ....+.+.+-+++-+..+.... -.+|++.+..+
T Consensus 151 ~~IkQGPkEPf~DfVdRl~kal~~e~-~~~~vK~~mt~tL~~qNANp~Ck~ilk~lg~~a~Lee~~~aC 218 (342)
T 3gv2_A 151 LDIRQGPKEPFRDYVDRFYKTLRAEQ-ASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTAC 218 (342)
T ss_dssp GGCCCCTTCCHHHHHHHHHHHHHHTT-CCHHHHHHHHHTHHHHTSCHHHHHHHHHHCTTCCHHHHHHHT
T ss_pred hhhccCCCCcHHHHHHHHHHHHHhhc-cccchhhhhhhhhhhhccCHHHHHHHhccCCCCCHHHHHHHc
Confidence 45778 8999999999998877543 2332 3444455666888777776444 45777777654
No 133
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=22.73 E-value=42 Score=25.67 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=19.8
Q ss_pred CeEEEEEeeCCCcchhccHHHHHH
Q 036272 315 KIPLTILIDSGSTHNYLHHRFAKI 338 (383)
Q Consensus 315 ~~~v~~LiDsGAt~s~Is~~~~~~ 338 (383)
|..+.|=|||||..|-|...-++.
T Consensus 17 g~~~~AKiDTGA~TSSLhA~dI~~ 40 (146)
T 2pma_A 17 NLTLSAKLDTGAKSASLHAVNITE 40 (146)
T ss_dssp TEEEEEEECTTCSSEEEECEEEEE
T ss_pred CCEEEEEecCCcCcceecceeEEE
Confidence 667899999999999988775543
No 134
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=20.22 E-value=51 Score=29.50 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=20.4
Q ss_pred EEEEEeeCCCcchhccHHHHHHhC
Q 036272 317 PLTILIDSGSTHNYLHHRFAKITR 340 (383)
Q Consensus 317 ~v~~LiDsGAt~s~Is~~~~~~l~ 340 (383)
...++||||.+..++....++.+.
T Consensus 253 ~~~aiiDTGTs~~~lP~~~~~~i~ 276 (370)
T 3psg_A 253 GCQAIVDTGTSLLTGPTSAIANIQ 276 (370)
T ss_dssp CEEEEECTTCCSEEEEHHHHHHHH
T ss_pred CceEEEcCCCCcEECCHHHHHHHH
Confidence 357999999999999999887763
Done!