BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036275
         (271 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 161/194 (82%), Positives = 179/194 (92%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFEEMKRLGITPTMKSHMLLL+AYSK G+VAKCE ++N++H+SGL+PDTFV+NSML
Sbjct: 376 DAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSML 435

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQF KMEEVLTAME G YA DISTYNILINIYGR GF EKMEGLFQSL AK LK
Sbjct: 436 NLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLK 495

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVTWTSRL AYSRKKLY +CLEIFEEMIDAGC+PDG TAKVL+S+CSSEDQIEQVTT+
Sbjct: 496 PDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTV 555

Query: 237 VRTMHKDMKTALPI 250
           +RTMHK+M+T LP+
Sbjct: 556 IRTMHKNMETVLPV 569



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 6/207 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+     P + ++  L+ A+++ G   K E +  Q+ + G +PD +  N+++ 
Sbjct: 272 ALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALME 331

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G      E+ + M+      D ++YNI+++ YGRGG  E  + +F+ +    + P
Sbjct: 332 AYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITP 391

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            + +    L+AYS+     +C +I  E+ ++G  PD      +++      Q  ++  ++
Sbjct: 392 TMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVL 451

Query: 238 RTMHK-----DMKTALPIYFNLYGEKG 259
             M       D+ T   I  N+YG  G
Sbjct: 452 TAMESGPYATDIST-YNILINIYGRAG 477



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 77/166 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+F EM++ G+ P+   +   +    K GN  +   +  +M +   +P T     ++N
Sbjct: 202 AEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLIN 261

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           L+G+  Q     ++   M       +I TY  L+N + R G  EK E +F+ L     +P
Sbjct: 262 LHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEP 321

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           DV  + + + AYSR        EIF  M   GC PD  +  +++ A
Sbjct: 322 DVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDA 367



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+ MKR    P+ +++ LL+  + K         + N+M     KP+     +++N
Sbjct: 237 AVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVN 296

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G  EK EE+   +++  +  D+  YN L+  Y R GF      +F  +     +P
Sbjct: 297 AFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEP 356

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  ++   + AY R  L+     +FEEM   G  P   +  +L+SA S    + +   +V
Sbjct: 357 DRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIV 416

Query: 238 RTMHKDM----KTALPIYFNLYGEKG 259
             +H+         L    NLYG  G
Sbjct: 417 NELHESGLEPDTFVLNSMLNLYGRLG 442



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 85/168 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + E+      PT  ++ LLL AY  +G + K E +  +M K GL P   V N+ ++
Sbjct: 167 AETTYFELIEARCIPTEDTYALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYID 226

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  ++  E+   M++        TY +LIN++G+         LF  + +++ KP
Sbjct: 227 GLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKP 286

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           ++ T+T+ + A++R+ L  +  EIFE++ + G  PD      L+ A S
Sbjct: 287 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYS 334



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 55/123 (44%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +++S  + D  + N +++ YGR   ++  E     + +        TY +L+  Y   G 
Sbjct: 139 LYRSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGL 198

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +EK E +F  +    L P  + + + +    +    +R +EIF+ M    C P   T  +
Sbjct: 199 LEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTL 258

Query: 220 LIS 222
           LI+
Sbjct: 259 LIN 261



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 42/107 (39%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           + S+ +D+  +N++I+ YGR    +  E  +  L   R  P   T+   L AY    L  
Sbjct: 141 RSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGLLE 200

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           +   IF EM   G  P        I         ++   + + M +D
Sbjct: 201 KAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRD 247



 Score = 37.7 bits (86), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ FV   + ++Y     F     V   M+       + ++ +L+  Y + G   K EG+
Sbjct: 426 PDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGL 485

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              +    LKPD     S L  Y R   + K  E+   M       D  T  +L++    
Sbjct: 486 FQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSS 545

Query: 157 GGFIEKMEGLFQSL 170
              IE++  + +++
Sbjct: 546 EDQIEQVTTVIRTM 559


>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like, partial [Cucumis sativus]
          Length = 312

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 176/194 (90%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFEEMKR+GITPTMKSHMLLL+AYS  GNVAKCE +I QMHKSGLKPDTFV+NSML
Sbjct: 119 DAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSML 178

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQF KME++ + M+KG   ADISTYNILIN+YGR GF+E+ME LFQ LPAK L+
Sbjct: 179 NLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLE 238

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVTWTSR+ AYSRKKLY+RCLE+FE+MIDAGCYPDGGTAKVL+SACSSE+QIEQVT +
Sbjct: 239 PDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNV 298

Query: 237 VRTMHKDMKTALPI 250
           VRTMHKD+KT LP+
Sbjct: 299 VRTMHKDLKTLLPV 312



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 44  PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103
           PN   F+       A  +F+EM+     P + +   L+ A ++ G   K E +  QM ++
Sbjct: 1   PNNNRFVQESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEA 60

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G +PD +  N+++  Y R G      E+ + M+      D ++YNI+++ YGR G  E  
Sbjct: 61  GYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDA 120

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + +F+ +    + P + +    L+AYS      +C +I  +M  +G  PD      +++ 
Sbjct: 121 QAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNL 180

Query: 224 CSSEDQIEQVTTLVRTMHK-----DMKTALPIYFNLYGEKG 259
                Q  ++  L  TM K     D+ T   I  N+YG  G
Sbjct: 181 YGRLGQFGKMEDLFSTMQKGPCRADIST-YNILINVYGRAG 220


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score =  336 bits (861), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 176/194 (90%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFEEMKR+GITPTMKSHMLLL+AYS  GNVAKCE +I QMHKSGLKPDTFV+NSML
Sbjct: 383 DAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSML 442

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQF KME++ + M+KG   ADISTYNILIN+YGR GF+E+ME LFQ LPAK L+
Sbjct: 443 NLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLE 502

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVTWTSR+ AYSRKKLY+RCLE+FE+MIDAGCYPDGGTAKVL+SACSSE+QIEQVT +
Sbjct: 503 PDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNV 562

Query: 237 VRTMHKDMKTALPI 250
           VRTMHKD+KT LP+
Sbjct: 563 VRTMHKDLKTLLPV 576



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  MKR G  PT  ++ +L+  Y K       + + ++M     KP+     +++N
Sbjct: 244 AVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVN 303

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G  EK EE+   M++  Y  D+  YN L+  Y R GF      +F  +     +P
Sbjct: 304 ALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEP 363

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  ++   + AY R  L+     +FEEM   G  P   +  +L+SA SS   + +   ++
Sbjct: 364 DRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDII 423

Query: 238 RTMHKD-MKT---ALPIYFNLYGEKG 259
             MHK  +K     +    NLYG  G
Sbjct: 424 GQMHKSGLKPDTFVMNSMLNLYGRLG 449



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D  + + E+      PT  ++ LLL AY K+G + K E V  +M K GL P   V N+
Sbjct: 171 YKDVESTYLELLESHCIPTEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNA 230

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   + G   K  E+   M++        TY +LIN+YG+       + +F  +  +R
Sbjct: 231 YIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQR 290

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            KP++ T+T+ + A +R+ L  +  EIFE+M +AG  PD
Sbjct: 291 CKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPD 329



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 11/229 (4%)

Query: 41  QHTPNLFVFIFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           Q T + +  + ++Y  +     A  +F+EM+     P + +   L+ A ++ G   K E 
Sbjct: 257 QPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEE 316

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +  QM ++G +PD +  N+++  Y R G      E+ + M+      D ++YNI+++ YG
Sbjct: 317 IFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYG 376

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R G  E  + +F+ +    + P + +    L+AYS      +C +I  +M  +G  PD  
Sbjct: 377 RAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTF 436

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK-----DMKTALPIYFNLYGEKG 259
               +++      Q  ++  L  TM K     D+ T   I  N+YG  G
Sbjct: 437 VMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADIST-YNILINVYGRAG 484



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AVF EM++ G++P+   +   +    K GN  K   + ++M + G +P T     ++N
Sbjct: 209 AEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLIN 268

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YG+  +    + +   M       +I T+  L+N   R G  EK E +F+ +     +P
Sbjct: 269 VYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEP 328

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           DV  + + + +YSR        EIF  M   GC PD  +  +++ A
Sbjct: 329 DVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDA 374



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           CE ++N   KS  +PD  V N +++ YG+   ++ +E     + +        TY +L+ 
Sbjct: 142 CEWIMN---KSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLK 198

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            Y + G +EK E +F  +    L P  + + + +    +     + +EIF  M   GC P
Sbjct: 199 AYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQP 258

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
              T  +LI+    E +    + + + +  +M+T
Sbjct: 259 TTDTYTMLINVYGKESK----SHMAQNIFDEMRT 288



 Score = 37.4 bits (85), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/81 (23%), Positives = 38/81 (46%)

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PDV+ +   + AY ++ LY+     + E++++ C P   T  +L+ A      +E+  
Sbjct: 151 FRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGLLEKAE 210

Query: 235 TLVRTMHKDMKTALPIYFNLY 255
            +   M K   +   I +N Y
Sbjct: 211 AVFAEMRKYGLSPSAIVYNAY 231


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/192 (80%), Positives = 175/192 (91%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFE MKRLGITPTMKSHMLLL+AYS+ G VAKCE ++NQMHKSG+KPDTFV+NSML
Sbjct: 396 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 455

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQFEKMEEVLTAMEKG Y ADISTYNILINIYGR GF  +ME LF+SLPA+ L 
Sbjct: 456 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLI 515

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVTWTSR+ AYSR+K Y RCLE+FEEMIDAGCYPDGGTAKVL+SACS+ DQI++VTT+
Sbjct: 516 PDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTV 575

Query: 237 VRTMHKDMKTAL 248
           +RTMHKDM+T+L
Sbjct: 576 IRTMHKDMRTSL 587



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM+     P + +   L+ A+++ G   K E +  Q+ ++GL+PD +  N+++ 
Sbjct: 292 ALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALME 351

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G      E+ + M+      D ++YNI+++ YGR G  E  + +F+ +    + P
Sbjct: 352 AYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITP 411

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            + +    L+AYSR     +C EI  +M  +G  PD      +++      Q E++  ++
Sbjct: 412 TMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVL 471

Query: 238 RTMHK-----DMKTALPIYFNLYGEKG 259
             M K     D+ T   I  N+YG  G
Sbjct: 472 TAMEKGPYPADIST-YNILINIYGRAG 497



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 88/171 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A + + E+      PT  ++ LLL AY  +G + K E V  +M K G  P   V N+
Sbjct: 184 YKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNA 243

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   + G  +K  E+   M++       +TY +LIN+YG+         +F  + +++
Sbjct: 244 YIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQK 303

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            KP++ T+T+ + A++R+ L  +  EIFE++ +AG  PD      L+ A S
Sbjct: 304 CKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYS 354



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AVF EM++ G  P+   +   +    K G+  K   +  +M +   +P T     ++N
Sbjct: 222 AEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLIN 281

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LYG+  +     +V   M       +I T+  L+N + R G  EK E +F+ L    L+P
Sbjct: 282 LYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEP 341

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV  + + + AYSR        EIF  M   GC PD  +  +++ A       E    + 
Sbjct: 342 DVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVF 401

Query: 238 RTMHK 242
             M +
Sbjct: 402 EVMKR 406



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE MKR    P+  ++ +L+  Y K         V ++M     KP+     +++N
Sbjct: 257 AVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVN 316

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G  EK EE+   +++     D+  YN L+  Y R GF      +F  +     +P
Sbjct: 317 AFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEP 376

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  ++   + AY R  L+     +FE M   G  P   +  +L+SA S   ++ +   +V
Sbjct: 377 DRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIV 436

Query: 238 RTMHKDM----KTALPIYFNLYGEKG 259
             MHK         L    NLYG  G
Sbjct: 437 NQMHKSGIKPDTFVLNSMLNLYGRLG 462



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 4/178 (2%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQ 124
           R    P +  + LL+ AY +     K E    ++ ++   P  DT+ +  +L  Y   G 
Sbjct: 161 RSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYAL--LLKAYCTSGL 218

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            EK E V   M K  +      YN  I+   +GG  +K   +F+ +   R +P   T+T 
Sbjct: 219 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 278

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  Y +       L++F EM    C P+  T   L++A + E   E+   +   + +
Sbjct: 279 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 336



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 54/123 (43%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +++S   PD    N +++ YG+   ++K E     + +        TY +L+  Y   G 
Sbjct: 159 LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 218

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +EK E +F  +      P  V + + +    +    ++ +EIFE M    C P   T  +
Sbjct: 219 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 278

Query: 220 LIS 222
           LI+
Sbjct: 279 LIN 281



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           + S+  D+  YN+LI+ YG+    +K E  +  L   R  P   T+   L AY    L  
Sbjct: 161 RSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLE 220

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM----KTALPIYF 252
           +   +F EM   G  P        I         ++   +   M +D          +  
Sbjct: 221 KAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLI 280

Query: 253 NLYGE 257
           NLYG+
Sbjct: 281 NLYGK 285



 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ FV   + ++Y     F     V   M++      + ++ +L+  Y + G  A+ E +
Sbjct: 446 PDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEEL 505

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              +    L PD     S +  Y R  Q+ +  EV   M       D  T  +L++    
Sbjct: 506 FRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSN 565

Query: 157 GGFIEKMEGLFQSL 170
           G  I+++  + +++
Sbjct: 566 GDQIQEVTTVIRTM 579


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/192 (80%), Positives = 175/192 (91%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFE MKRLGITPTMKSHMLLL+AYS+ G VAKCE ++NQMHKSG+KPDTFV+NSML
Sbjct: 434 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 493

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQFEKMEEVLTAMEKG Y ADISTYNILINIYGR GF  +ME LF+SLPA+ L 
Sbjct: 494 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLI 553

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVTWTSR+ AYSR+K Y RCLE+FEEMIDAGCYPDGGTAKVL+SACS+ DQI++VTT+
Sbjct: 554 PDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTV 613

Query: 237 VRTMHKDMKTAL 248
           +RTMHKDM+T+L
Sbjct: 614 IRTMHKDMRTSL 625



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM+     P + +   L+ A+++ G   K E +  Q+ ++GL+PD +  N+++ 
Sbjct: 330 ALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALME 389

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G      E+ + M+      D ++YNI+++ YGR G  E  + +F+ +    + P
Sbjct: 390 AYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITP 449

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            + +    L+AYSR     +C EI  +M  +G  PD      +++      Q E++  ++
Sbjct: 450 TMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVL 509

Query: 238 RTMHK-----DMKTALPIYFNLYGEKG 259
             M K     D+ T   I  N+YG  G
Sbjct: 510 TAMEKGPYPADIST-YNILINIYGRAG 535



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 88/171 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A + + E+      PT  ++ LLL AY  +G + K E V  +M K G  P   V N+
Sbjct: 222 YKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNA 281

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   + G  +K  E+   M++       +TY +LIN+YG+         +F  + +++
Sbjct: 282 YIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQK 341

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            KP++ T+T+ + A++R+ L  +  EIFE++ +AG  PD      L+ A S
Sbjct: 342 CKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYS 392



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AVF EM++ G  P+   +   +    K G+  K   +  +M +   +P T     ++N
Sbjct: 260 AEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLIN 319

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LYG+  +     +V   M       +I T+  L+N + R G  EK E +F+ L    L+P
Sbjct: 320 LYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEP 379

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV  + + + AYSR        EIF  M   GC PD  +  +++ A       E    + 
Sbjct: 380 DVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVF 439

Query: 238 RTMHK 242
             M +
Sbjct: 440 EVMKR 444



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE MKR    P+  ++ +L+  Y K         V ++M     KP+     +++N
Sbjct: 295 AVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVN 354

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G  EK EE+   +++     D+  YN L+  Y R GF      +F  +     +P
Sbjct: 355 AFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEP 414

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  ++   + AY R  L+     +FE M   G  P   +  +L+SA S   ++ +   +V
Sbjct: 415 DRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIV 474

Query: 238 RTMHKDM----KTALPIYFNLYGEKG 259
             MHK         L    NLYG  G
Sbjct: 475 NQMHKSGIKPDTFVLNSMLNLYGRLG 500



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 4/178 (2%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQ 124
           R    P +  + LL+ AY +     K E    ++ ++   P  DT+ +  +L  Y   G 
Sbjct: 199 RSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYAL--LLKAYCTSGL 256

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            EK E V   M K  +      YN  I+   +GG  +K   +F+ +   R +P   T+T 
Sbjct: 257 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 316

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  Y +       L++F EM    C P+  T   L++A + E   E+   +   + +
Sbjct: 317 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 374



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 54/123 (43%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +++S   PD    N +++ YG+   ++K E     + +        TY +L+  Y   G 
Sbjct: 197 LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 256

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +EK E +F  +      P  V + + +    +    ++ +EIFE M    C P   T  +
Sbjct: 257 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 316

Query: 220 LIS 222
           LI+
Sbjct: 317 LIN 319



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           + S+  D+  YN+LI+ YG+    +K E  +  L   R  P   T+   L AY    L  
Sbjct: 199 RSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLE 258

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM----KTALPIYF 252
           +   +F EM   G  P        I         ++   +   M +D          +  
Sbjct: 259 KAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLI 318

Query: 253 NLYGE 257
           NLYG+
Sbjct: 319 NLYGK 323



 Score = 37.4 bits (85), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ FV   + ++Y     F     V   M++      + ++ +L+  Y + G  A+ E +
Sbjct: 484 PDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEEL 543

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              +    L PD     S +  Y R  Q+ +  EV   M       D  T  +L++    
Sbjct: 544 FRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSN 603

Query: 157 GGFIEKMEGLFQSL 170
           G  I+++  + +++
Sbjct: 604 GDQIQEVTTVIRTM 617


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/195 (77%), Positives = 174/195 (89%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA AVF++MKR+GITPTMKSHM+LL+AYSK G+V KCE ++NQM KSGLK DT+V+NSM
Sbjct: 382 DDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSM 441

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LNLYGRLGQF KMEEVL  MEKGSY ADISTYNILIN YG+ GFIE+ME LFQ LP+K L
Sbjct: 442 LNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGL 501

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDVVTWTSR+ AYS+KKLY +CLEIFEEMID GCYPDGGTAKVL++ACS+EDQ EQVTT
Sbjct: 502 KPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTT 561

Query: 236 LVRTMHKDMKTALPI 250
           ++RTMHKDMKT LP+
Sbjct: 562 VIRTMHKDMKTVLPV 576



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM      P + ++  L+ A+++ G   K E V  QM ++GL+PD +  N+++ 
Sbjct: 279 ALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALME 338

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G      E+ + M+      D ++YNIL++ YG+ GF +  E +F+ +    + P
Sbjct: 339 AYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITP 398

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            + +    L+AYS+     +C EI  +M  +G   D      +++      Q  ++  ++
Sbjct: 399 TMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVL 458

Query: 238 RTMHK-----DMKTALPIYFNLYGEKG 259
           R M K     D+ T   I  N YG+ G
Sbjct: 459 RVMEKGSYVADIST-YNILINRYGQAG 484



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 80/176 (45%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            +  S     A AVF EM+  G+  +   +   +    K GN  K E +  +M K   KP
Sbjct: 199 AYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKP 258

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
            T     ++NLYG+ G+     ++   M       +I TY  L+N + R G  EK E +F
Sbjct: 259 TTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVF 318

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + +    L+PDV  + + + AYSR        EIF  M   GC PD  +  +L+ A
Sbjct: 319 EQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDA 374



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 45  NLFVFIFS--IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           NL +  F   + + +A + + ++      PT  ++ LL+ AY  +G + K E V  +M  
Sbjct: 159 NLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGLLEKAEAVFAEMRN 218

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            GL     V N+ +N   + G  +K EE+   M+K +      TY +LIN+YG+ G    
Sbjct: 219 YGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFM 278

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              LF  + +   KP++ T+T+ + A++R+ L  +  E+FE+M +AG  PD      L+ 
Sbjct: 279 ALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALME 338

Query: 223 ACS 225
           A S
Sbjct: 339 AYS 341



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+ MK+    PT +++ +L+  Y K G       + ++M     KP+     +++N
Sbjct: 244 AEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVN 303

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G  EK EEV   M++     D+  YN L+  Y R G+      +F  +     +P
Sbjct: 304 AFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEP 363

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  ++   + AY +         +F++M   G  P   +  VL+SA S    + +   ++
Sbjct: 364 DRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEIL 423

Query: 238 RTMHKD---MKT-ALPIYFNLYGEKG 259
             M K    + T  L    NLYG  G
Sbjct: 424 NQMCKSGLKLDTYVLNSMLNLYGRLG 449



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 4/178 (2%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQ 124
           R    P +  + LL+ A+ +     + E    Q+ ++   P  DT+ +  ++  Y   G 
Sbjct: 148 RSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYAL--LIKAYCISGL 205

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            EK E V   M      +    YN  IN   +GG  +K E +F+ +     KP   T+T 
Sbjct: 206 LEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTM 265

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  Y +       L++F EM+   C P+  T   L++A + E   E+   +   M +
Sbjct: 266 LINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE 323


>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 589

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 163/192 (84%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA AVFEEMKRLGI PTMKSHMLLL+AYS+  +V KCE ++ +M ++G++PDTFV+NSM
Sbjct: 384 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFVLNSM 443

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LNLYGRLGQF KME++L  ME G   ADISTYNILINIYG+ GF+E++E LF  L  +  
Sbjct: 444 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKERNF 503

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDVVTWTSR+ AYSRKKLY +CLEIFEEMID+GC PDGGTAKVL+SACSSEDQ+EQVT+
Sbjct: 504 KPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDSGCAPDGGTAKVLLSACSSEDQVEQVTS 563

Query: 236 LVRTMHKDMKTA 247
           ++RTMHK +  +
Sbjct: 564 VLRTMHKGVSVS 575



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 24/193 (12%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +++ ++      PT  ++ LL+ AY   G + K E V+ +M    + P   V N+
Sbjct: 184 FKEAESLYVQLLESRCVPTEDTYTLLIKAYCMAGLIEKAEAVLIEMQNHHVSPSVTVYNA 243

Query: 115 MLN-LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +  L  R G  E+  +V   M++        TYN++IN+YG+         LF  + + 
Sbjct: 244 YIEGLMKRKGNTEQAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLFCEMRSH 303

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-----IDA------------------GC 210
           + KP++ T+T+ + A++R+ L  +  EIFE++     ID+                  GC
Sbjct: 304 QCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQHMGC 363

Query: 211 YPDGGTAKVLISA 223
            PD  +  +++ A
Sbjct: 364 EPDRASYNIMVDA 376



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 27/226 (11%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+ MKR    PT +++ L++  Y K         +  +M     KP+     +++N + 
Sbjct: 261 VFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAFA 320

Query: 121 RLGQFEKMEEVLTAMEKGSY----------AADI-------------STYNILINIYGRG 157
           R G  EK EE+   +++  +          AA+I             ++YNI+++ YGR 
Sbjct: 321 REGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRA 380

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G     E +F+ +    + P + +    L+AYSR +   +C  I +EM + G  PD    
Sbjct: 381 GLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFVL 440

Query: 218 KVLISACSSEDQIEQVTTLVRTMHKDMKTA----LPIYFNLYGEKG 259
             +++      Q  ++  ++  M     TA      I  N+YG+ G
Sbjct: 441 NSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAG 486



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 1/180 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           ++R    P +    LL+ AY +     + E +  Q+ +S   P       ++  Y   G 
Sbjct: 159 LRRSSFQPDVICFNLLIDAYGQKFRFKEAESLYVQLLESRCVPTEDTYTLLIKAYCMAGL 218

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            EK E VL  M+    +  ++ YN  I  +  R G  E+   +FQ +   R KP   T+ 
Sbjct: 219 IEKAEAVLIEMQNHHVSPSVTVYNAYIEGLMKRKGNTEQAIDVFQRMKRDRCKPTTETYN 278

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             +  Y +        ++F EM    C P+  T   L++A + E   E+   +   + +D
Sbjct: 279 LMINLYGKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQED 338



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           CE +   + +S  +PD    N +++ YG+  +F++ E +   + +        TY +LI 
Sbjct: 155 CEWI---LRRSSFQPDVICFNLLIDAYGQKFRFKEAESLYVQLLESRCVPTEDTYTLLIK 211

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY-SRKKLYRRCLEIFEEMIDAGCY 211
            Y   G IEK E +   +    + P V  + + +     RK    + +++F+ M    C 
Sbjct: 212 AYCMAGLIEKAEAVLIEMQNHHVSPSVTVYNAYIEGLMKRKGNTEQAIDVFQRMKRDRCK 271

Query: 212 PDGGTAKVLIS 222
           P   T  ++I+
Sbjct: 272 PTTETYNLMIN 282



 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ FV   + ++Y     F+    +  EM+    T  + ++ +L+  Y K G + + E +
Sbjct: 435 PDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEEL 494

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             ++ +   KPD     S +  Y R   + K  E+   M     A D  T  +L++    
Sbjct: 495 FVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDSGCAPDGGTAKVLLSACSS 554

Query: 157 GGFIEKMEGLFQSL 170
              +E++  + +++
Sbjct: 555 EDQVEQVTSVLRTM 568


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 161/187 (86%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA AVFEEMKRLGI PTMKSHMLLL+AYSK  +V KCE ++ +M ++G++PDTFV+NSM
Sbjct: 386 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM 445

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LNLYGRLGQF KME++L  ME G   ADISTYNILINIYG+ GF+E++E LF  L  K  
Sbjct: 446 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF 505

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDVVTWTSR+ AYSRKKLY +CLE+FEEMID+GC PDGGTAKVL+SACSSE+Q+EQVT+
Sbjct: 506 RPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTS 565

Query: 236 LVRTMHK 242
           ++RTMHK
Sbjct: 566 VLRTMHK 572



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 4/200 (2%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+     P + ++  L+ A+++ G   K E +  Q+ + GL+PD +V N+++  Y R G
Sbjct: 289 EMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 348

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
                 E+ + M+      D ++YNI+++ YGR G     E +F+ +    + P + +  
Sbjct: 349 YPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHM 408

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             L+AYS+ +   +C  I +EM + G  PD      +++      Q  ++  ++  M   
Sbjct: 409 LLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENG 468

Query: 244 MKTA----LPIYFNLYGEKG 259
             TA      I  N+YG+ G
Sbjct: 469 PCTADISTYNILINIYGKAG 488



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAY-----SKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           A  V  EM+   ++P     + +  AY      + GN  +   V  +M +   KP T   
Sbjct: 209 AEVVLVEMQNHHVSPKTIG-VTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETY 267

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N M+NLYG+  +     ++   M       +I TY  L+N + R G  EK E +F+ L  
Sbjct: 268 NLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE 327

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             L+PDV  + + + +YSR        EIF  M   GC PD  +  +++ A
Sbjct: 328 DGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDA 378



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 4/163 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF---V 111
           + +A +++ ++      PT  ++ LL+ AY   G + + E V+ +M    + P T    V
Sbjct: 171 YKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTV 230

Query: 112 INSMLN-LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
            N+ +  L  R G  E+  +V   M++        TYN++IN+YG+         L+  +
Sbjct: 231 YNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEM 290

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            + + KP++ T+T+ + A++R+ L  +  EIFE++ + G  PD
Sbjct: 291 RSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPD 333



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           CE +   + KS  +PD    N +++ YG+  Q+++ E +   + +  Y     TY +LI 
Sbjct: 142 CEWI---LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIK 198

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA----AYSRKKLYRRCLEIFEEMIDA 208
            Y   G IE+ E +   +    + P  +  T   A       RK      +++F+ M   
Sbjct: 199 AYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRD 258

Query: 209 GCYPDGGTAKVLIS 222
            C P   T  ++I+
Sbjct: 259 RCKPTTETYNLMIN 272



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ FV   + ++Y     F+    +  EM+    T  + ++ +L+  Y K G + + E +
Sbjct: 437 PDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEEL 496

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             ++ +   +PD     S +  Y R   + K  EV   M     A D  T  +L++    
Sbjct: 497 FVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSS 556

Query: 157 GGFIEKMEGLFQSL 170
              +E++  + +++
Sbjct: 557 EEQVEQVTSVLRTM 570


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 161/187 (86%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA AVFEEMKRLGI PTMKSHMLLL+AYSK  +V KCE ++ +M ++G++PDTFV+NSM
Sbjct: 408 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM 467

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LNLYGRLGQF KME++L  ME G   ADISTYNILINIYG+ GF+E++E LF  L  K  
Sbjct: 468 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF 527

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDVVTWTSR+ AYSRKKLY +CLE+FEEMID+GC PDGGTAKVL+SACSSE+Q+EQVT+
Sbjct: 528 RPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTS 587

Query: 236 LVRTMHK 242
           ++RTMHK
Sbjct: 588 VLRTMHK 594



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 4/200 (2%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+     P + ++  L+ A+++ G   K E +  Q+ + GL+PD +V N+++  Y R G
Sbjct: 311 EMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 370

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
                 E+ + M+      D ++YNI+++ YGR G     E +F+ +    + P + +  
Sbjct: 371 YPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHM 430

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             L+AYS+ +   +C  I +EM + G  PD      +++      Q  ++  ++  M   
Sbjct: 431 LLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENG 490

Query: 244 MKTA----LPIYFNLYGEKG 259
             TA      I  N+YG+ G
Sbjct: 491 PCTADISTYNILINIYGKAG 510



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAY-----SKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           A  V  EM+   ++P     + +  AY      + GN  +   V  +M +   KP T   
Sbjct: 231 AEVVLVEMQNHHVSPKTIG-VTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETY 289

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N M+NLYG+  +     ++   M       +I TY  L+N + R G  EK E +F+ L  
Sbjct: 290 NLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE 349

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             L+PDV  + + + +YSR        EIF  M   GC PD  +  +++ A
Sbjct: 350 DGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDA 400



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 4/163 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF---V 111
           + +A +++ ++      PT  ++ LL+ AY   G + + E V+ +M    + P T    V
Sbjct: 193 YKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTV 252

Query: 112 INSMLN-LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
            N+ +  L  R G  E+  +V   M++        TYN++IN+YG+         L+  +
Sbjct: 253 YNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEM 312

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            + + KP++ T+T+ + A++R+ L  +  EIFE++ + G  PD
Sbjct: 313 RSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPD 355



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           CE +   + KS  +PD    N +++ YG+  Q+++ E +   + +  Y     TY +LI 
Sbjct: 164 CEWI---LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIK 220

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA----AYSRKKLYRRCLEIFEEMIDA 208
            Y   G IE+ E +   +    + P  +  T   A       RK      +++F+ M   
Sbjct: 221 AYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRD 280

Query: 209 GCYPDGGTAKVLIS 222
            C P   T  ++I+
Sbjct: 281 RCKPTTETYNLMIN 294



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ FV   + ++Y     F+    +  EM+    T  + ++ +L+  Y K G + + E +
Sbjct: 459 PDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEEL 518

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             ++ +   +PD     S +  Y R   + K  EV   M     A D  T  +L++    
Sbjct: 519 FVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSS 578

Query: 157 GGFIEKMEGLFQSL 170
              +E++  + +++
Sbjct: 579 EEQVEQVTSVLRTM 592


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 146/162 (90%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFE MKRLGITPTMKSHMLLL+AYS+ G VAKCE ++NQMHKSG+KPDTFV+NSML
Sbjct: 326 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 385

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQFEKMEEVLTAMEKG Y ADISTYNILINIYGR GF  +ME LF+SLPA+ L 
Sbjct: 386 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLI 445

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
           PDVVTWTSR+ AYSR+K Y RCLE+FEEMIDAGCYPDGGTAK
Sbjct: 446 PDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAK 487



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM+     P + +   L+ A+++ G   K E +  Q+ ++GL+PD +  N+++ 
Sbjct: 222 ALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALME 281

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G      E+ + M+      D ++YNI+++ YGR G  E  + +F+ +    + P
Sbjct: 282 AYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITP 341

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            + +    L+AYSR     +C EI  +M  +G  PD      +++      Q E++  ++
Sbjct: 342 TMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVL 401

Query: 238 RTMHK-----DMKTALPIYFNLYGEKG 259
             M K     D+ T   I  N+YG  G
Sbjct: 402 TAMEKGPYPADIST-YNILINIYGRAG 427



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 88/171 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A + + E+      PT  ++ LLL AY  +G + K E V  +M K G  P   V N+
Sbjct: 114 YKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNA 173

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   + G  +K  E+   M++       +TY +LIN+YG+         +F  + +++
Sbjct: 174 YIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQK 233

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            KP++ T+T+ + A++R+ L  +  EIFE++ +AG  PD      L+ A S
Sbjct: 234 CKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYS 284



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AVF EM++ G  P+   +   +    K G+  K   +  +M +   +P T     ++N
Sbjct: 152 AEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLIN 211

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LYG+  +     +V   M       +I T+  L+N + R G  EK E +F+ L    L+P
Sbjct: 212 LYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEP 271

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV  + + + AYSR        EIF  M   GC PD  +  +++ A       E    + 
Sbjct: 272 DVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVF 331

Query: 238 RTMHK 242
             M +
Sbjct: 332 EVMKR 336



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE MKR    P+  ++ +L+  Y K         V ++M     KP+     +++N
Sbjct: 187 AVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVN 246

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G  EK EE+   +++     D+  YN L+  Y R GF      +F  +     +P
Sbjct: 247 AFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEP 306

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  ++   + AY R  L+     +FE M   G  P   +  +L+SA S   ++ +   +V
Sbjct: 307 DRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIV 366

Query: 238 RTMHKDM----KTALPIYFNLYGEKG 259
             MHK         L    NLYG  G
Sbjct: 367 NQMHKSGIKPDTFVLNSMLNLYGRLG 392



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 4/178 (2%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQ 124
           R    P +  + LL+ AY +     K E    ++ ++   P  DT+ +  +L  Y   G 
Sbjct: 91  RSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYAL--LLKAYCTSGL 148

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            EK E V   M K  +      YN  I+   +GG  +K   +F+ +   R +P   T+T 
Sbjct: 149 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 208

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  Y +       L++F EM    C P+  T   L++A + E   E+   +   + +
Sbjct: 209 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 266



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 54/123 (43%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +++S   PD    N +++ YG+   ++K E     + +        TY +L+  Y   G 
Sbjct: 89  LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 148

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +EK E +F  +      P  V + + +    +    ++ +EIFE M    C P   T  +
Sbjct: 149 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 208

Query: 220 LIS 222
           LI+
Sbjct: 209 LIN 211



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           + S+  D+  YN+LI+ YG+    +K E  +  L   R  P   T+   L AY    L  
Sbjct: 91  RSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLE 150

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM----KTALPIYF 252
           +   +F EM   G  P        I         ++   +   M +D          +  
Sbjct: 151 KAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLI 210

Query: 253 NLYGE 257
           NLYG+
Sbjct: 211 NLYGK 215


>gi|356534408|ref|XP_003535747.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35130-like [Glycine max]
          Length = 357

 Score =  283 bits (723), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 159/194 (81%), Gaps = 9/194 (4%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA AVF++MKR+GITPTMKSHM+L +AYSK GNV KCE ++NQM KSGLK +T+V+ SM
Sbjct: 169 DDAEAVFKDMKRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSM 228

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LNLYGRLGQF KMEEVL  MEKGSY ADISTYNILIN YG+ G IE+ME  FQ LP+K L
Sbjct: 229 LNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGXIERMEDFFQLLPSKGL 288

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDVVTWTSR+ AYS KKLY +CLEIFEE ID         AKVL++AC++EDQ EQVTT
Sbjct: 289 KPDVVTWTSRMGAYSXKKLYLKCLEIFEETID---------AKVLLAACTNEDQTEQVTT 339

Query: 236 LVRTMHKDMKTALP 249
           ++RTMHKDMKT LP
Sbjct: 340 VIRTMHKDMKTVLP 353



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 12/213 (5%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM      P + ++  L+ A+ + G   K E V  QM ++GL+PD +  N+++ 
Sbjct: 60  ALILFHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALME 119

Query: 118 LY------GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            Y       R G      E+ + M+      D ++YNIL++ YG+ GF +  E +F+ + 
Sbjct: 120 TYKFSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMK 179

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              + P + +     +AYS+     +C EI  +M  +G   +    K +++      Q  
Sbjct: 180 RVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSMLNLYGRLGQFG 239

Query: 232 QVTTLVRTMHK-----DMKTALPIYFNLYGEKG 259
           ++  ++R M K     D+ T   I  N YG+ G
Sbjct: 240 KMEEVLRVMEKGSYVADIST-YNILINRYGQAG 271



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 59/107 (55%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           P   V N+ +N   + G  +K EE+   M+K +  +   TY +LIN+YG+ G       L
Sbjct: 4   PSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGKSFMALIL 63

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           F  +   + KP++ T+T+ + A+ R+ L  +  E+FE+M +AG  PD
Sbjct: 64  FHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPD 110



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 16/169 (9%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K GN  K E +  +M K   K  T     ++NLYG+ G+      +   M       +I 
Sbjct: 18  KGGNSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGKSFMALILFHEMTTHKCKPNIC 77

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR------CL 199
           TY  L+N + R G  EK E +F+ +    L+PDV  + + +  Y     + R        
Sbjct: 78  TYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYKFSSPFSRAGYPYGAA 137

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA---CSSEDQIEQVTTLVRTMHKDMK 245
           EIF  M   GC PD  +  +L+ A      +D  E V        KDMK
Sbjct: 138 EIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAV-------FKDMK 179


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 119/194 (61%), Positives = 151/194 (77%), Gaps = 1/194 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AVFE +KR G+ PTMKSHMLLL A++++GNVA+CE V+ Q+HKSGL PDT  +N+ML
Sbjct: 207 EAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAML 266

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YGR G+ + ME +L AME+     D+ TYN+ +N YGR G++E+ME  F SL  + L 
Sbjct: 267 NAYGRAGRLDDMERLLAAMERRG-TRDVGTYNVAVNAYGRAGYLERMEAAFASLERRGLA 325

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DVVTWTSR+ AY+RKK YRRCLEIFEEM+DAGCYPD GTAKVL++ACS E Q+EQVT +
Sbjct: 326 ADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDERQVEQVTAI 385

Query: 237 VRTMHKDMKTALPI 250
           VR+MHK+ KT   I
Sbjct: 386 VRSMHKEAKTLFTI 399



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+EM+ +G    + ++  L+ A+++ G   K E V  +M ++G +PD +  N+++ 
Sbjct: 103 AMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALME 162

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  +   E+ + M+      D ++YNIL++ YGR G   + E +F+SL  + + P
Sbjct: 163 AYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAP 222

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            + +    LAA++R     RC E+  ++  +G  PD      +++A     +++ +  L+
Sbjct: 223 TMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLL 282

Query: 238 RTMHKDMKTALPIY---FNLYGEKG 259
             M +     +  Y    N YG  G
Sbjct: 283 AAMERRGTRDVGTYNVAVNAYGRAG 307



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 35/187 (18%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS----------------- 114
           PT  ++ LLL AY   G++ + EGVI++M + G+ P   V N+                 
Sbjct: 12  PTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEV 71

Query: 115 ------------------MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
                             M+N+YG+  Q     +V   M+     A+I TY  L+N + R
Sbjct: 72  YQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAR 131

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  EK E +F+ +     +PDV  + + + AYSR    +   EIF  M   GC PD  +
Sbjct: 132 EGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRAS 191

Query: 217 AKVLISA 223
             +L+ A
Sbjct: 192 YNILVDA 198



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 4/203 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V++ MKR       +++ L++  Y K+        V  +M   G K +     +++N + 
Sbjct: 71  VYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFA 130

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  EK EEV   M++  +  D+  YN L+  Y R GF +    +F  +     +PD  
Sbjct: 131 REGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRA 190

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++   + AY R  L+R    +FE +   G  P   +  +L++A +    + +   ++  +
Sbjct: 191 SYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQL 250

Query: 241 HKDM----KTALPIYFNLYGEKG 259
           HK        AL    N YG  G
Sbjct: 251 HKSGLAPDTIALNAMLNAYGRAG 273


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score =  266 bits (680), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 156/194 (80%), Gaps = 4/194 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A F+E+K+ G+ PTMKSHMLLL+A++++GNVA+CE V+ Q+HKSGL+PDTF +N+ML
Sbjct: 400 EAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAML 459

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAA----DISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N YGR G+ + ME +  AME+G  A+    D STYN+L+N YGR G++++ME  F+SL A
Sbjct: 460 NAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAA 519

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + L  DVVTWTSR+ AY+RKK Y +CL +FEEM+DAGCYPD GTAKVL++ACS E Q+EQ
Sbjct: 520 RGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQ 579

Query: 233 VTTLVRTMHKDMKT 246
           VT +VR+MHKD KT
Sbjct: 580 VTAIVRSMHKDAKT 593



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 8/207 (3%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EMK +G  P + ++  L+ A+++ G   K E V  +M ++G +PD +  N+++  Y 
Sbjct: 299 VFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 358

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  +   E+ + ME      D ++YNIL++ +GR G  ++ E  FQ L  + ++P + 
Sbjct: 359 RAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMK 418

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +    L+A++R     RC E+  ++  +G  PD      +++A     +++ +  L   M
Sbjct: 419 SHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAM 478

Query: 241 HK-DMKTA-------LPIYFNLYGEKG 259
            + D  +A         +  N YG  G
Sbjct: 479 ERGDGASAGAPDTSTYNVLVNAYGRAG 505



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 86/159 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A A +  +      PT  ++ LLL AY  +G + + EGVI++M ++G+ P   V N+
Sbjct: 188 LSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNA 247

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L+   +    EK  EV   M+K     +  TY ++IN+YG+         +F+ + +  
Sbjct: 248 YLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVG 307

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            KP++ T+T+ + A++R+ L  +  E+FEEM  AG  PD
Sbjct: 308 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 346



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 78/178 (43%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L  +  S     A  V  EM+R GI PT   +   L    K     K   V  +M K   
Sbjct: 214 LRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERC 273

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           + +T     M+N+YG+  Q      V   M+      +I TY  L+N + R G  EK E 
Sbjct: 274 RTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEE 333

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +F+ +     +PDV  + + + AYSR  L +   EIF  M   GC PD  +  +L+ A
Sbjct: 334 VFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDA 391



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 4/203 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V++ MK+       +++ L++  Y K         V  +M   G KP+     +++N + 
Sbjct: 264 VYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFA 323

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  EK EEV   M++  +  D+  YN L+  Y R G  +    +F  +     +PD  
Sbjct: 324 REGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRA 383

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++   + A+ R  L++     F+E+   G  P   +  +L+SA +    + +   ++  +
Sbjct: 384 SYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQL 443

Query: 241 HKDM----KTALPIYFNLYGEKG 259
           HK        AL    N YG  G
Sbjct: 444 HKSGLRPDTFALNAMLNAYGRAG 466



 Score = 38.9 bits (89), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 14/164 (8%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAME----KGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           + ++N+  +L    + E ++T  E    + S+  DI  YN+LI+ YG+   + + E  + 
Sbjct: 137 DDIVNVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYM 196

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV-------LI 221
           +L   R  P   T+   L AY       R   +  EM   G  P   TA V       L+
Sbjct: 197 ALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPP---TATVYNAYLDGLL 253

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            A  SE  +E    + +   +       +  N+YG+     S+L
Sbjct: 254 KARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSL 297


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 160/208 (76%), Gaps = 6/208 (2%)

Query: 45  NLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           N+ V  F  +    +A A F+E+K+ G+ PTMKSHMLLL+A++++GNVA+CE V+ Q+HK
Sbjct: 386 NILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHK 445

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG----SYAADISTYNILINIYGRGG 158
           SGL+PDTF +N+MLN YGR G+ + ME +  AME+G    + A D STYN+++N YGR G
Sbjct: 446 SGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAG 505

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
           ++++ME  F+SL A+ L  DVVTWTSR+ AY+RKK Y +CL +FEEM+DAGCYPD GTAK
Sbjct: 506 YLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAK 565

Query: 219 VLISACSSEDQIEQVTTLVRTMHKDMKT 246
           VL++ACS E Q+EQV  +VR+MHKD KT
Sbjct: 566 VLLAACSDERQVEQVKAIVRSMHKDAKT 593



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 95/182 (52%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EMK +G  P + ++  L+ A+++ G   K E V  +M ++G +PD +  N+++  Y 
Sbjct: 299 VFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 358

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  +   E+ + ME      D ++YNIL++ +GR G  ++ E  FQ L  + ++P + 
Sbjct: 359 RAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMK 418

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +    L+A++R     RC E+  ++  +G  PD      +++A     +++ +  L   M
Sbjct: 419 SHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAM 478

Query: 241 HK 242
            +
Sbjct: 479 ER 480



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 86/159 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A A +  +      PT  ++ LLL AY  +G + + EGVI++M ++G+ P   V N+
Sbjct: 188 LSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNA 247

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L+   +    EK  EV   M+K     +  TY ++IN+YG+         +F+ + +  
Sbjct: 248 YLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVG 307

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            KP++ T+T+ + A++R+ L  +  E+FEEM  AG  PD
Sbjct: 308 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 346



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 78/178 (43%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L  +  S     A  V  EM+R GI PT   +   L    K     K   V  +M K   
Sbjct: 214 LRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERC 273

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           + +T     M+N+YG+  Q      V   M+      +I TY  L+N + R G  EK E 
Sbjct: 274 RTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEE 333

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +F+ +     +PDV  + + + AYSR  L +   EIF  M   GC PD  +  +L+ A
Sbjct: 334 VFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDA 391



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 4/203 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V++ MK+       +++ L++  Y K         V  +M   G KP+     +++N + 
Sbjct: 264 VYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFA 323

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  EK EEV   M++  +  D+  YN L+  Y R G  +    +F  +     +PD  
Sbjct: 324 REGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRA 383

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++   + A+ R  L++     F+E+   G  P   +  +L+SA +    + +   ++  +
Sbjct: 384 SYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQL 443

Query: 241 HKDM----KTALPIYFNLYGEKG 259
           HK        AL    N YG  G
Sbjct: 444 HKSGLRPDTFALNAMLNAYGRAG 466



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 4/180 (2%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRL 122
           ++R    P +  + LL+ AY +   +++ E     + ++   P  DT+ +  +L  Y   
Sbjct: 163 LRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYAL--LLRAYCGS 220

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           GQ  + E V++ M++       + YN  ++   +    EK   ++Q +  +R + +  T+
Sbjct: 221 GQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETY 280

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  +  Y +       L +F EM   GC P+  T   L++A + E   E+   +   M +
Sbjct: 281 TLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 340



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 14/164 (8%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAME----KGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           + ++N+  +L    + E ++T  E    + S+  DI  YN+LI+ YG+   + + E  + 
Sbjct: 137 DDIVNVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYM 196

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV-------LI 221
           +L   R  P   T+   L AY       R   +  EM   G  P   TA V       L+
Sbjct: 197 ALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPP---TATVYNAYLDGLL 253

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            A  SE  +E    + +   +       +  N+YG+     S+L
Sbjct: 254 KARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSL 297


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 157/197 (79%), Gaps = 7/197 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A F+E+K+ G+ PTMKSHMLLL+A++K+GNVA+CE V+ Q+HKSGL+PDTF +N+ML
Sbjct: 393 EAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAML 452

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAA-------DISTYNILINIYGRGGFIEKMEGLFQS 169
           N YGR G+ + ME +L AME+G           D STYN+L+N+YGR G++++ME  F++
Sbjct: 453 NAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAFRA 512

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           L A+ L  DVVTWTSR+ AY+RKK Y RCLEIFEEM+DAGCYPD GTAKVL++ACS E Q
Sbjct: 513 LAARGLAADVVTWTSRIGAYARKKEYGRCLEIFEEMVDAGCYPDAGTAKVLLAACSDERQ 572

Query: 230 IEQVTTLVRTMHKDMKT 246
           +EQVT +VR+MHKD KT
Sbjct: 573 VEQVTAIVRSMHKDAKT 589



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 96/182 (52%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EMK +G  P + ++  L+ A+++ G   K E V  +M ++G +PD +  N+++  Y 
Sbjct: 292 VFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 351

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  +   E+ + ME      D ++YNIL++ YGR G  ++ E  FQ L  + ++P + 
Sbjct: 352 RAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMK 411

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +    L+A+++     RC E+  ++  +G  PD      +++A     +++ +  L+  M
Sbjct: 412 SHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAM 471

Query: 241 HK 242
            +
Sbjct: 472 ER 473



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 88/171 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A +++  +      PT  ++ LLL AY  +G + + EGVI++M K+GL P   V N+
Sbjct: 181 LNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQKNGLPPTATVYNA 240

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L+   +    EK  EV   M+K     +  TY ++IN+YG+         +F  +    
Sbjct: 241 YLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIG 300

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            KP++ T+T+ + A++R+ L  +  E+FEEM  AG  PD      L+ A S
Sbjct: 301 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 351



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 4/203 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V++ MK+       +++ L++  Y K         V N+M   G KP+     +++N + 
Sbjct: 257 VYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFA 316

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  EK EEV   M++  +  D+  YN L+  Y R G  +    +F  +     +PD  
Sbjct: 317 REGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRA 376

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++   + AY R  L++     F+E+   G  P   +  +L+SA +    + +   ++  +
Sbjct: 377 SYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQL 436

Query: 241 HKDM----KTALPIYFNLYGEKG 259
           HK        AL    N YG  G
Sbjct: 437 HKSGLRPDTFALNAMLNAYGRAG 459



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 4/178 (2%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQ 124
           R    P +  + LL+ AY +   + K E +   + ++   P  DT+ +  +L  Y   GQ
Sbjct: 158 RSSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYAL--LLRAYCNSGQ 215

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             + E V++ M+K       + YN  ++   +    EK   ++Q +  +R + +  T+T 
Sbjct: 216 LHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTL 275

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  Y + K     L++F EM   GC P+  T   L++A + E   E+   +   M +
Sbjct: 276 MINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 333



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           CE +   +++S  +PD    N +++ YG+  Q  K E +  A+ +        TY +L+ 
Sbjct: 152 CEWI---LYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLR 208

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            Y   G + + EG+   +    L P    + + L    + +   + +E+++ M    C  
Sbjct: 209 AYCNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRT 268

Query: 213 DGGTAKVLIS 222
           +  T  ++I+
Sbjct: 269 NTETYTLMIN 278



 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 14/164 (8%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAME----KGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           + ++N+  +L    + E ++T  E    + S+  DI  YN+LI+ YG+   + K E ++ 
Sbjct: 130 DDIVNVAVQLRLNRQWEPIITVCEWILYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYM 189

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV-------LI 221
           +L      P   T+   L AY       R   +  EM   G  P   TA V       L+
Sbjct: 190 ALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQKNGLPP---TATVYNAYLDGLL 246

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            A  SE  +E    + +   +       +  N+YG+     S+L
Sbjct: 247 KARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSL 290


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 158/224 (70%), Gaps = 11/224 (4%)

Query: 37  FLLLQH--------TPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           F L+QH        + N+ V  +  +    DA AVFEE+K+ G++PTMKSHMLLL A+++
Sbjct: 175 FSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHAR 234

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
           +GN  +CE V+ Q+HKSGL PDTF +N+MLN Y R G+ + ME +  AME+    AD+ T
Sbjct: 235 SGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG-DADVGT 293

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           YN+ +N YGR G++ +ME  F ++ A+ L  DVVTWT+R+ AY+R+K Y RC+ + EEM+
Sbjct: 294 YNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMV 353

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
           DAGCYPD GTA+VL++ACS E Q+EQVT +VR+MHK  KT   I
Sbjct: 354 DAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHKKPKTLFTI 397



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 3/202 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EMK +G  P + ++  L+ A+++ G   K E V  +M ++G +PD +  N+++  Y 
Sbjct: 104 VFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 163

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  +   E+ + M+      D ++YNIL++ YGR G  E  E +F+ L  + + P + 
Sbjct: 164 RAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMK 223

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +    LAA++R     RC E+  ++  +G  PD      +++A +   +++ +  L   M
Sbjct: 224 SHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAM 283

Query: 241 HKDMKTALPIY---FNLYGEKG 259
            +     +  Y    N YG  G
Sbjct: 284 ERRGDADVGTYNVAVNAYGRAG 305



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 80/142 (56%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           PT  ++ LLL AY   G++ + EGVI++M + G+ P+  V N+ L+   +    EK  EV
Sbjct: 10  PTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEV 69

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
              M++    A+  T+ ++IN+YG+         +F  + +   KP++ T+T+ + A++R
Sbjct: 70  YQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAR 129

Query: 192 KKLYRRCLEIFEEMIDAGCYPD 213
           + L  +  E+FEEM  AG  PD
Sbjct: 130 EGLCEKAEEVFEEMQQAGHEPD 151



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 4/203 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V++ MKR       ++  L++  Y K         V N+M   G KP+     +++N + 
Sbjct: 69  VYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFA 128

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  EK EEV   M++  +  D+  YN L+  Y R G  +    +F  +     +PD  
Sbjct: 129 REGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRA 188

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++   + AY R  L+     +FEE+   G  P   +  +L++A +      +   ++  +
Sbjct: 189 SYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQL 248

Query: 241 HKDMKT----ALPIYFNLYGEKG 259
           HK   T    AL    N Y   G
Sbjct: 249 HKSGLTPDTFALNAMLNAYARAG 271



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 2/135 (1%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           DT+ +  +L  Y   G   + E V++ M +     + + YN  ++   +    EK   ++
Sbjct: 13  DTYAL--LLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVY 70

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           Q +  +R + +  T+T  +  Y + K     +++F EM   GC P+  T   L++A + E
Sbjct: 71  QRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFARE 130

Query: 228 DQIEQVTTLVRTMHK 242
              E+   +   M +
Sbjct: 131 GLCEKAEEVFEEMQQ 145


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 148/194 (76%), Gaps = 1/194 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFEE+K+ G++PTMKSHMLLL A++++GN  +CE V+ Q+HKSGL PDTF +N+ML
Sbjct: 546 DAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAML 605

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y R G+ + ME +L AME+    AD+ TYN+ +N YGR G++ +ME  F ++ A+ L 
Sbjct: 606 NAYARAGRLDDMERLLAAMERRG-DADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLA 664

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DVVTWT+R+ AY+R+K Y RC+ + EEM+DAGCYPD GTA+VL++ACS E Q+EQVT +
Sbjct: 665 ADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAI 724

Query: 237 VRTMHKDMKTALPI 250
           VR+MHK  KT   I
Sbjct: 725 VRSMHKKPKTLFTI 738



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 3/202 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EMK +G  P + ++  L+ A+++ G   K E V  +M ++G +PD +  N+++  Y 
Sbjct: 445 VFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 504

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  +   E+ + M+      D ++YNIL++ YGR G  E  E +F+ L  + + P + 
Sbjct: 505 RAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMK 564

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +    LAA++R     RC E+  ++  +G  PD      +++A +   +++ +  L+  M
Sbjct: 565 SHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAM 624

Query: 241 HKDMKTALPIY---FNLYGEKG 259
            +     +  Y    N YG  G
Sbjct: 625 ERRGDADVGTYNVAVNAYGRAG 646



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 4/210 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A +++  +      PT  ++ LLL AY   G++ + EGVI++M + G+ P+  V N+
Sbjct: 334 LNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNA 393

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L+   +    EK  EV   M++    A+  T+ ++IN+YG+         +F  + +  
Sbjct: 394 YLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG 453

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP++ T+T+ + A++R+ L  +  E+FEEM  AG  PD      L+ A S     +  +
Sbjct: 454 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGAS 513

Query: 235 TLVRTMH----KDMKTALPIYFNLYGEKGV 260
            +   M     +  + +  I  + YG  G+
Sbjct: 514 EIFSLMQHMGCEPDRASYNILVDAYGRAGL 543



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V++ MKR       ++  L++  Y K         V N+M   G KP+     +++N
Sbjct: 407 AVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVN 466

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G  EK EEV   M++  +  D+  YN L+  Y R G  +    +F  +     +P
Sbjct: 467 AFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEP 526

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  ++   + AY R  L+     +FEE+   G  P   +  +L++A +      +   ++
Sbjct: 527 DRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVM 586

Query: 238 RTMHKDMKT----ALPIYFNLYGEKG 259
             +HK   T    AL    N Y   G
Sbjct: 587 AQLHKSGLTPDTFALNAMLNAYARAG 612



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 4/178 (2%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQ 124
           R    P +  + LL+ +Y K   + K E +   + ++   P  DT+ +  +L  Y   G 
Sbjct: 311 RSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYAL--LLRAYCNAGS 368

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             + E V++ M +     + + YN  ++   +    EK   ++Q +  +R + +  T+T 
Sbjct: 369 LHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTL 428

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  Y + K     +++F EM   GC P+  T   L++A + E   E+   +   M +
Sbjct: 429 MINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 486



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/171 (18%), Positives = 71/171 (41%), Gaps = 11/171 (6%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H +F+++  + +   M     L+        +  CE +   +++S  +PD    N ++  
Sbjct: 279 HNLFDDLVNVAVQFRMNKKWDLI--------IPVCEWI---LYRSSFRPDIICYNLLIES 327

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           YG+  Q  K E +  A+ +        TY +L+  Y   G + + EG+   +    + P+
Sbjct: 328 YGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPN 387

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
              + + L    + +   + +E+++ M    C  +  T  ++I+      Q
Sbjct: 388 ATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQ 438


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/194 (55%), Positives = 147/194 (75%), Gaps = 1/194 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFEE+K+ G++PTMKSHMLLL A++++GN  +CE V+ Q+HKSGL PDTF +N+ML
Sbjct: 403 DAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAML 462

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y R G+ + ME +  AME+    AD+ TYN+ +N YGR G++ +ME  F ++ A+ L 
Sbjct: 463 NAYARAGRLDDMERLFAAMERRG-DADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLA 521

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DVVTWT+R+ AY+R+K Y RC+ + EEM+DAGCYPD GTA+VL++ACS E Q+EQVT +
Sbjct: 522 ADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAI 581

Query: 237 VRTMHKDMKTALPI 250
           VR+MHK  KT   I
Sbjct: 582 VRSMHKKPKTLFTI 595



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 3/202 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EMK +G  P + ++  L+ A+++ G   K E V  +M ++G +PD +  N+++  Y 
Sbjct: 302 VFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 361

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  +   E+ + M+      D ++YNIL++ YGR G  E  E +F+ L  + + P + 
Sbjct: 362 RAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMK 421

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +    LAA++R     RC E+  ++  +G  PD      +++A +   +++ +  L   M
Sbjct: 422 SHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAM 481

Query: 241 HKDMKTALPIY---FNLYGEKG 259
            +     +  Y    N YG  G
Sbjct: 482 ERRGDADVGTYNVAVNAYGRAG 503



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 4/210 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A +++  +      PT  ++ LLL AY   G++ + EGVI++M + G+ P+  V N+
Sbjct: 191 LNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNA 250

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L+   +    EK  EV   M++    A+  T+ ++IN+YG+         +F  + +  
Sbjct: 251 YLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG 310

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP++ T+T+ + A++R+ L  +  E+FEEM  AG  PD      L+ A S     +  +
Sbjct: 311 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGAS 370

Query: 235 TLVRTMH----KDMKTALPIYFNLYGEKGV 260
            +   M     +  + +  I  + YG  G+
Sbjct: 371 EIFSLMQHMGCEPDRASYNILVDAYGRAGL 400



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 4/203 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V++ MKR       ++  L++  Y K         V N+M   G KP+     +++N + 
Sbjct: 267 VYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFA 326

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  EK EEV   M++  +  D+  YN L+  Y R G  +    +F  +     +PD  
Sbjct: 327 REGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRA 386

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++   + AY R  L+     +FEE+   G  P   +  +L++A +      +   ++  +
Sbjct: 387 SYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQL 446

Query: 241 HKDMKT----ALPIYFNLYGEKG 259
           HK   T    AL    N Y   G
Sbjct: 447 HKSGLTPDTFALNAMLNAYARAG 469



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 4/178 (2%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQ 124
           R    P +  + LL+ +Y K   + K E +   + ++   P  DT+ +  +L  Y   G 
Sbjct: 168 RSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYAL--LLRAYCNAGS 225

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             + E V++ M +     + + YN  ++   +    EK   ++Q +  +R + +  T+T 
Sbjct: 226 LHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTL 285

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  Y + K     +++F EM   GC P+  T   L++A + E   E+   +   M +
Sbjct: 286 MINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 343



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/164 (18%), Positives = 70/164 (42%), Gaps = 11/164 (6%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H +F+++  + +   M     L+        +  CE ++   ++S  +PD    N ++  
Sbjct: 136 HNLFDDLVNVAVQFRMNKKWDLI--------IPVCEWIL---YRSSFRPDIICYNLLIES 184

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           YG+  Q  K E +  A+ +        TY +L+  Y   G + + EG+   +    + P+
Sbjct: 185 YGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPN 244

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              + + L    + +   + +E+++ M    C  +  T  ++I+
Sbjct: 245 ATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMIN 288


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/199 (51%), Positives = 148/199 (74%), Gaps = 6/199 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A FE +K+ G+ PTMKSHMLLL+A++++GNV +CE V+ Q+HKSGL+PDTF +N+ML
Sbjct: 415 EAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAML 474

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G+ + ME +L AM+    +AD+ ++N+ +N Y R G++ +ME  F+ +  ++ K
Sbjct: 475 HAYARAGRLDDMERLLAAMDLAG-SADVGSHNVAVNAYARAGYLGRMEAAFEGIRRRKGK 533

Query: 177 -----PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
                 DVV+WTSR+  Y+RKK Y +CLEIFEEM+DAGCYPD GTAKVL++ACS E Q+E
Sbjct: 534 KGGIDADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDAGTAKVLMAACSDERQVE 593

Query: 232 QVTTLVRTMHKDMKTALPI 250
           QV  +VR+MHK+ KT   +
Sbjct: 594 QVAAIVRSMHKEAKTLFTV 612



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 94/183 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+ +G    + ++  L+ A+++ G   K E V  QM ++G +PD +  N+++ 
Sbjct: 311 AMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALME 370

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  +   E+ + M+      D ++YNIL++ YGR G   + E  F+SL  + + P
Sbjct: 371 AYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAP 430

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            + +    L+A++R     RC ++  ++  +G  PD      ++ A +   +++ +  L+
Sbjct: 431 TMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERLL 490

Query: 238 RTM 240
             M
Sbjct: 491 AAM 493



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 35/204 (17%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A +++  +      PT  ++ LLL AY    ++ + EGVI++M + G+ P   V N+
Sbjct: 203 LNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNA 262

Query: 115 -----------------------------------MLNLYGRLGQFEKMEEVLTAMEKGS 139
                                              M+N+YG+  Q     ++   M+   
Sbjct: 263 YLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIG 322

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
             A+I TY  L+N + R G  EK E +F+ +     +PDV  + + + AYSR    +   
Sbjct: 323 CKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGAS 382

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           EIF  M   GC PD  +  +L+ A
Sbjct: 383 EIFSLMQHMGCEPDRASYNILVDA 406



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 83/182 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V++ MK+       +++ L++  Y K+        + N+M   G K +     +++N + 
Sbjct: 279 VYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFA 338

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  EK EEV   M++  +  D+  YN L+  Y R GF +    +F  +     +PD  
Sbjct: 339 REGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRA 398

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++   + AY R  L+R     FE +   G  P   +  +L+SA +    + +   ++  +
Sbjct: 399 SYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQL 458

Query: 241 HK 242
           HK
Sbjct: 459 HK 460



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/133 (19%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           ++ CE ++   ++S  +PD    N +++ YGR  Q  K E +  A+ +        TY +
Sbjct: 171 ISVCEWIV---YRSSFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYAL 227

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           L+  Y     + + EG+   +    + P    + + L    + +   + +E+++ M    
Sbjct: 228 LLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKER 287

Query: 210 CYPDGGTAKVLIS 222
           C  +  T  ++I+
Sbjct: 288 CRTNTETYTLMIN 300


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 133/182 (73%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA AV++ MK  G  PTMKSHMLLL++Y+K G V + E ++ ++  SG+KPDTF+ NS+
Sbjct: 319 ADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSL 378

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ YG  G+ ++ME +L +M       DIST N LIN Y +GG+IEK E +F SL +K L
Sbjct: 379 LSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGL 438

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV++WTS + AY+++KL+R+C+ IF++M+ AGC PD  TAKV +S+C S +Q+++VT 
Sbjct: 439 TPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLSSCRSPEQVKEVTD 498

Query: 236 LV 237
           ++
Sbjct: 499 MI 500



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 11/225 (4%)

Query: 45  NLFVFIFSIY----FSD-AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           N F  + +IY    +SD A  +F  M++    P + ++  L+ A+++ GN  + E +  +
Sbjct: 198 NTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAE 257

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +   G  PD +  N++L  Y R       +EV  AM +     D  +YNILI+ +GR G 
Sbjct: 258 LQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGL 317

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
               + ++ S+     KP + +    L++Y++         +  E+ ++G  PD      
Sbjct: 318 TADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNS 377

Query: 220 LISACSSEDQIEQVTTLVRTM-----HKDMKTALPIYFNLYGEKG 259
           L+SA  +  +I+++ +L+ +M       D+ T L    N Y + G
Sbjct: 378 LLSAYGNSGRIDEMESLLESMVSSVAKPDIST-LNTLINAYAQGG 421



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 108/240 (45%), Gaps = 5/240 (2%)

Query: 24  NYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA 83
           NY P    +M+ + +   +T  L V   S   S A   F +M++ GI P + +  +++  
Sbjct: 148 NYSPGTVEWMIFSGIATYNT-YLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINI 206

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
           Y K     K + +   M K+   P+ +   +++N + R G   + EE+   ++   +  D
Sbjct: 207 YGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPD 266

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TYN L+  Y RG      + +FQ++    ++PD V++   + A+ R  L      +++
Sbjct: 267 VYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYD 326

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN----LYGEKG 259
            M +AG  P   +  +L+S+ +   ++ +   LVR +           FN     YG  G
Sbjct: 327 SMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSG 386



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 9/180 (5%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF---- 110
           + +A   F  MK     PT  S  +LL AYS+   + K E + ++M +S   P T     
Sbjct: 99  WREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEWMI 158

Query: 111 -----VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
                  N+ L + G+ G+  + E+    M+K      ++T+ I+INIYG+  + +K + 
Sbjct: 159 FSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADD 218

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           LF+S+      P++ T+T+ + A++R+    R  EIF E+   G  PD  T   L+ A S
Sbjct: 219 LFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYS 278



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 9/147 (6%)

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            KPD    N +++ YG+  Q+ + E+    M+        +++N+L+  Y RG  +EK E
Sbjct: 79  FKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAE 138

Query: 165 GLFQSLPAKRLKPDVVTWT--SRLAAYS-------RKKLYRRCLEIFEEMIDAGCYPDGG 215
            LF  +      P  V W   S +A Y+       +     +  + F +M   G  P   
Sbjct: 139 KLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVN 198

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  ++I+        ++   L R+M K
Sbjct: 199 TFTIMINIYGKAYYSDKADDLFRSMRK 225



 Score = 37.0 bits (84), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           Y   A  VF  ++  G+TP + S   L+ AY++     KC  +  +M K+G  PD
Sbjct: 422 YIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPD 476


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 130/185 (70%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA A+++ MK++G  PTMKSH+LLL+A+ K G V   E  + ++   G++PDTF+ NS
Sbjct: 327 ISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNS 386

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  YG  G+ +KME +  +M+      DI T N LIN+Y +GG+IE+ E +F SL +K 
Sbjct: 387 LLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKG 446

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV++WTS + AYS++KLYR+C+ ++++M+ AGC PD  TAKVL+S+C   +Q+++VT
Sbjct: 447 FTPDVMSWTSLMGAYSKRKLYRKCVSVYQKMLIAGCIPDRATAKVLLSSCRGPEQVKEVT 506

Query: 235 TLVRT 239
            ++ T
Sbjct: 507 DMIET 511



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 4/210 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +++A   F  MK+    PT  S  +L+ AYS+ G + + E V+++M +S   P     N+
Sbjct: 117 WTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNT 176

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L +  + G ++  E+V   M+       ++T+ ++INIYG+     K E LFQS+    
Sbjct: 177 YLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKAL 236

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P + T+T+ + A++R+    R  EIF E+   G  PD  T   L+ A S         
Sbjct: 237 CPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAK 296

Query: 235 TLVRTMHKDMKTALPIYFNL----YGEKGV 260
            +  TM +    A  + +N+    +G  G+
Sbjct: 297 EVFETMLEAGVKADHVSYNILIDAFGRAGL 326



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 85/184 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM+  G+ P + +  L++  Y K  + AK E +   M K+   P  F   +++N
Sbjct: 190 AEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALIN 249

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G   + EE+   ++   +  DI TYN L+  Y RGG     + +F+++    +K 
Sbjct: 250 AHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKA 309

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++   + A+ R  L      I++ M   G  P   +  +L+SA     ++      V
Sbjct: 310 DHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFV 369

Query: 238 RTMH 241
           R + 
Sbjct: 370 RRLE 373



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 82/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  EMK    +P + ++   L   +K+G+    E V  +M   G+ P       M+N
Sbjct: 155 AERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMIN 214

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YG+     K E +  +M K      + TY  LIN + R G   + E +F  L +    P
Sbjct: 215 IYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVP 274

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + L AYSR        E+FE M++AG   D  +  +LI A      I     + 
Sbjct: 275 DIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIY 334

Query: 238 RTMHK 242
            +M K
Sbjct: 335 DSMKK 339



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 45  NLFVFIFSIYFSDAHA-----VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           N F  + +IY    H+     +F+ M++    P++ ++  L+ A+++ GN  + E +  +
Sbjct: 207 NTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAE 266

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +   G  PD +  N++L  Y R G     +EV   M +    AD  +YNILI+ +GR G 
Sbjct: 267 LQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGL 326

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I   + ++ S+     KP + +    L+A+ +             +   G  PD      
Sbjct: 327 ISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNS 386

Query: 220 LISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
           L+ A  +  +++++ +L  +M     K     L    N+Y + G
Sbjct: 387 LLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGG 430



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 67/145 (46%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +  S  KPD    N +++ YGR  Q+ + E     M+K       +++N+L+  Y RGG 
Sbjct: 92  LQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQ 151

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E+ E +   +      P +VT+ + L   ++   ++   ++F EM + G  P   T  +
Sbjct: 152 LERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTL 211

Query: 220 LISACSSEDQIEQVTTLVRTMHKDM 244
           +I+         +   L ++M K +
Sbjct: 212 MINIYGKAHHSAKAEHLFQSMRKAL 236


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + +DA AVFE+MKR+GITPTMKSHM+LL+A+SKTGNV+KCE ++NQM KSGLK DTFV+N
Sbjct: 387 FLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLN 446

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           SMLNLYGRLGQF KMEEVLT ME GS  ADISTYNILIN YG+ GFI+KMEGLF
Sbjct: 447 SMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGLF 500



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 82/176 (46%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            +  S     A AVF EMK  G+  +   +   +    K GN  K E +  +M + G KP
Sbjct: 206 AYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKP 265

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
            T     ++NLYG+ G+     +V   M       +I TY  L+N + R G  EK E +F
Sbjct: 266 STETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVF 325

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + +    L+PDV ++ + + AYSR        EIF  M   GC PD  +  +L+ A
Sbjct: 326 EQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDA 381



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  MKR G  P+ +++ +L+  Y K G       V N+M     KP+     +++N
Sbjct: 251 AEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVN 310

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G  EK EEV   M++     D+ +YN L+  Y R GF      +F  +     +P
Sbjct: 311 AFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEP 370

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  ++   + AY R         +FE+M   G  P   +  VL+SA S    + +   ++
Sbjct: 371 DRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDIL 430

Query: 238 RTMHKD---MKT-ALPIYFNLYGEKG 259
             M K    + T  L    NLYG  G
Sbjct: 431 NQMCKSGLKLDTFVLNSMLNLYGRLG 456



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 2/183 (1%)

Query: 45  NLFVFIFSIYF--SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           NL +  F   F   +A + + ++      P   ++ LL+ AY  +G + K E V  +M  
Sbjct: 166 NLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLEKAEAVFVEMKN 225

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            GL     V NS +N   + G   K EE+   M++        TY +LIN+YG+ G    
Sbjct: 226 YGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFM 285

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              +F  + + + KP++ T+T+ + A++R+ L  +  E+FE+M +AG  PD  +   L+ 
Sbjct: 286 ALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALME 345

Query: 223 ACS 225
           A S
Sbjct: 346 AYS 348



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFE+M+  G+ P + S+  L+ AYS+ G       + + M   G +PD    N +++
Sbjct: 321 AEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVD 380

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR G     E V   M++      + ++ +L++ + + G + K E +   +    LK 
Sbjct: 381 AYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKL 440

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           D     S L  Y R   + +  E+   M +  C  D  T  +LI+
Sbjct: 441 DTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILIN 485



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 67/164 (40%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           LL+ A+ +     + E    Q+ ++   P+      ++  Y   G  EK E V   M+  
Sbjct: 167 LLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNY 226

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
              +    YN  IN   +GG   K E +F  +     KP   T+T  +  Y +       
Sbjct: 227 GLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMA 286

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           L++F EM+   C P+  T   L++A + E   E+   +   M +
Sbjct: 287 LKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE 330



 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 51/121 (42%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           +S  K D    N +++ +G+   +++ E     + +     +  TY +LI  Y   G +E
Sbjct: 155 RSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLE 214

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           K E +F  +    L    V + S +    +     +  EIF  M   GC P   T  +LI
Sbjct: 215 KAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLI 274

Query: 222 S 222
           +
Sbjct: 275 N 275


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 84/190 (44%), Positives = 124/190 (65%), Gaps = 3/190 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +F+ M+  G +P +KS+MLLL+AY++ G V + E +++ M + G KPDT + NS
Sbjct: 330 YEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNS 389

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAA---DISTYNILINIYGRGGFIEKMEGLFQSLP 171
           ++N YG  G+ E ME +L  M K S      DI TYN LI +Y + GFI + E LFQ L 
Sbjct: 390 LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLA 449

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             +L PD  TWT+ +  Y++KKLYR+C  I ++M+++GC  D  TA+VL SAC S +Q+E
Sbjct: 450 RLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVE 509

Query: 232 QVTTLVRTMH 241
           QVT L+ ++ 
Sbjct: 510 QVTQLMESLQ 519



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 15/255 (5%)

Query: 19  HSWNFNYLPYPSHFMLINFLLLQHT--PNLFVFIF-------SIYFSDAHAVFEEMKRLG 69
           H WN  Y  +P    +  ++L   T  P+L  +         S+   DA   F  M+   
Sbjct: 77  HFWN--YKDWPRVTQMCEWVLQGTTFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEAL 134

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
             P  ++  +L+  Y   G+  K E +  QM K G  P     N+ L++     ++ + E
Sbjct: 135 CVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAE 194

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            +   +EK     +I TYN +I IYG+ G   K E L++S+      P++ T+T+ + A+
Sbjct: 195 ALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAF 254

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM----K 245
           +R+ LYR     F+++ +    PD      L+ A S          + +TM ++      
Sbjct: 255 ARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDT 314

Query: 246 TALPIYFNLYGEKGV 260
            +  I  N YG  G+
Sbjct: 315 VSHNILINAYGRAGL 329



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 1/208 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A A+F ++++    P + ++  ++  Y K G  +K E +   M ++   P+     +
Sbjct: 190 YRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTA 249

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + R G + + E     +++  Y  D   YN L+  Y +GG       +FQ++    
Sbjct: 250 LMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNG 309

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD V+    + AY R  LY    +IF+ M  AG  P+  +  +L+SA +   ++E+  
Sbjct: 310 CFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAE 369

Query: 235 TLVRTMHKD-MKTALPIYFNLYGEKGVA 261
            LV  M +D  K    IY +L    GV+
Sbjct: 370 ELVSAMERDGTKPDTLIYNSLINAYGVS 397



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  ++  M+R    P + +   L+ A+++ G   + E   +++ +   KPD +  N++
Sbjct: 226 SKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNAL 285

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y + G      E+   M++     D  ++NILIN YGR G  E  E +F+S+ +   
Sbjct: 286 MEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGF 345

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P++ +    L+AY+R        E+   M   G  PD      LI+A     + E +  
Sbjct: 346 SPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEA 405

Query: 236 LVRTMHK 242
           L+  M K
Sbjct: 406 LLAKMVK 412



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +F +M++ G +P   +    L          + E +   + K   +P+    N 
Sbjct: 155 FEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNR 214

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+ +YG+ G+  K E +  +M +     +I T+  L+N + R G   + E  F  L    
Sbjct: 215 MIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFD 274

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KPD   + + + AYS+       LEIF+ M   GC+PD  +  +LI+A       E   
Sbjct: 275 YKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAE 334

Query: 235 TLVRTMH 241
            + ++M 
Sbjct: 335 KIFKSMQ 341


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 84/190 (44%), Positives = 124/190 (65%), Gaps = 3/190 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +F+ M+  G +P +KS+MLLL+AY++ G V + E +++ M + G KPDT + N+
Sbjct: 330 YEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNA 389

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAA---DISTYNILINIYGRGGFIEKMEGLFQSLP 171
           ++N YG  G+ E ME +L  M K S      DI TYN LI +Y + GFI K E LFQ L 
Sbjct: 390 LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLA 449

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             +L PD  TWT+ +  Y++KKLYR+C  I ++M+++GC  D  TA+VL SAC S +Q+E
Sbjct: 450 RLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVE 509

Query: 232 QVTTLVRTMH 241
           QVT L+ ++ 
Sbjct: 510 QVTQLMESLQ 519



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 110/256 (42%), Gaps = 17/256 (6%)

Query: 19  HSWNFNYLPYPSHFMLINFLLLQHTP--------NLFVFIF--SIYFSDAHAVFEEMKRL 68
           H WN+   P  +        +LQ T         NL +  +  S+   DA   F  M+  
Sbjct: 77  HFWNYKDWPRVTQMCE---WVLQGTAFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEA 133

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
              P  ++  +L+  Y   G+  K E +  QM K G  P     N+ L++     ++ + 
Sbjct: 134 LCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRA 193

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E +   +EK     +I TYN +I IYG+ G   K E L++S+      P++ T+T+ + A
Sbjct: 194 EALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNA 253

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM---- 244
           ++R+ LYR     F+++ +    PD      L+ A S          + +TM ++     
Sbjct: 254 FARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPD 313

Query: 245 KTALPIYFNLYGEKGV 260
             +  I  N YG  G+
Sbjct: 314 TVSHNILINAYGRAGL 329



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A A+F ++++    P + ++  ++  Y K G  +K E +   M ++   P+     +
Sbjct: 190 YRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTA 249

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + R G + + E     +++  Y  D   YN L+  Y +GG       +FQ++    
Sbjct: 250 LMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNG 309

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD V+    + AY R  LY    +IF+ M  AG  P+  +  +L+SA +   ++E+  
Sbjct: 310 CFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAE 369

Query: 235 TLVRTMHKD-MKTALPIY---FNLYGEKG 259
            LV  M +D  K    IY    N YG  G
Sbjct: 370 ELVSAMERDGTKPDTLIYNALINAYGVSG 398



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  ++  M+R    P + +   L+ A+++ G   + E   +++ +   KPD +  N++
Sbjct: 226 SKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNAL 285

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y + G      E+   M++     D  ++NILIN YGR G  E  E +F+S+ +   
Sbjct: 286 MEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGF 345

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P++ +    L+AY+R        E+   M   G  PD      LI+A     + E +  
Sbjct: 346 SPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDMEA 405

Query: 236 LVRTMHK 242
           L+  M K
Sbjct: 406 LLAKMVK 412



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +F +M++ G +P   +    L          + E +   + K   +P+    N 
Sbjct: 155 FEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNR 214

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+ +YG+ G+  K E +  +M +     +I T+  L+N + R G   + E  F  L    
Sbjct: 215 MIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFD 274

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KPD   + + + AYS+       LEIF+ M   GC+PD  +  +LI+A       E   
Sbjct: 275 YKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAE 334

Query: 235 TLVRTMH 241
            + ++M 
Sbjct: 335 KIFKSMQ 341


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 107/209 (51%), Gaps = 8/209 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++MKR  ++  + ++  L+  Y+ TG +  C  +  +M   G  P+++  N+++ 
Sbjct: 72  AEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQ 131

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR G F++  E+   M+    A D+ TYNI I +YG+ G +E ME L   +  K + P
Sbjct: 132 GYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPP 191

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+ + L  Y++K  + +  EI  EM +AG  P+  T  +++S+   E  + + T L 
Sbjct: 192 DQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLF 251

Query: 238 RTMHKDMKTALP------IYFNLYGEKGV 260
             +    K  +P         +LYG  G+
Sbjct: 252 ENLKS--KGVVPNIVTYSAMLSLYGRHGL 278



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 91/158 (57%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +++EM  +G    + ++ + +  Y K G +   E ++++M   G+ PD    N+
Sbjct: 139 FKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNT 198

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++Y +   F K  E+L  M +  Y  +I TYNI+++   +   + +   LF++L +K 
Sbjct: 199 LLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKG 258

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           + P++VT+++ L+ Y R  LY    ++++EMI+AGC P
Sbjct: 259 VVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIP 296



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 3/193 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAY-SKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A ++F  M + G   T+ ++ +++  Y  +   +     ++  M +SG KPD  + N ++
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLV 60

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N     G+ E  E++L  M++   +A++ TY  LI  Y   G ++    LFQ +  K   
Sbjct: 61  NGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGES 120

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+ + +  Y RK L++  LE+++EM   GC  D  T  + I+       +E +  L
Sbjct: 121 PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERL 180

Query: 237 VRTMHKDMKTALP 249
           +  M  D K   P
Sbjct: 181 LDEM--DTKGVPP 191



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V+    YF  AH +  EM   G  P + ++ ++L++  K  +VA+   +   +   G+
Sbjct: 200 LDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGV 259

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+    ++ML+LYGR G + +  ++   M +      I  Y+ LI  YG  G  ++   
Sbjct: 260 VPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALA 319

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            FQ +    + PD   +T+ + AY +    R    ++ EM   G  PDG T  +L+ A
Sbjct: 320 CFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRA 377


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 8/209 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++MK+  ++  + ++  L+  Y+  G +  C  +  +M   G  P+++  N+++ 
Sbjct: 72  AEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQ 131

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR G F++  E+   M+    A D+ TYNI I +YG+ G +E ME L   +  K + P
Sbjct: 132 GYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPP 191

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+ + L  Y++K  + +  EI  EM +AG  P+  T  +++S+   E  + + T L 
Sbjct: 192 DQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLF 251

Query: 238 RTMHKDMKTALP------IYFNLYGEKGV 260
             +    K  +P         +LYG  G+
Sbjct: 252 ENLKS--KGVVPNIVTYSAMLSLYGRHGL 278



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 91/158 (57%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +++EM  +G    + ++ + +  Y K G +   E ++++M   G+ PD    N+
Sbjct: 139 FKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNT 198

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++Y +   F K  E+L  M +  Y  +I TYNI+++   +   + +   LF++L +K 
Sbjct: 199 LLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKG 258

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           + P++VT+++ L+ Y R  LY    ++++EMI+AGC P
Sbjct: 259 VVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIP 296



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 3/193 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAY-SKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A ++F  M + G   T+ ++ +++  Y  +   +     ++  M +SG KPD  + N ++
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLV 60

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N     G+ E  E++L  M++   +A++ TY  LI  Y   G ++    LFQ +  K   
Sbjct: 61  NGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGES 120

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+ + +  Y RK L++  LE+++EM   GC  D  T  + I+       +E +  L
Sbjct: 121 PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERL 180

Query: 237 VRTMHKDMKTALP 249
           +  M  D K   P
Sbjct: 181 LDEM--DTKGVPP 191



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V+    YF  AH +  EM   G  P + ++ ++L++  K  +VA+   +   +   G+
Sbjct: 200 LDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGV 259

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+    ++ML+LYGR G + +  ++   M +      I  Y+ LI  YG  G  ++   
Sbjct: 260 VPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALA 319

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            FQ +    + PD   +T+ + AY +    R    ++ EM   G  PDG T  +L+ A
Sbjct: 320 CFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRA 377


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 109/207 (52%), Gaps = 4/207 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA ++  EM+R G +P   ++ LL+ AY+  G       V+ +M  SG++P+++V + +L
Sbjct: 344 DAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRIL 403

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y   G+++K  +VL  M     + D   YN++I+ +G+   ++     F  +  + ++
Sbjct: 404 ASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQ 463

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VTW + +  + +   + +  E+FE M ++GC P   T  ++I++   +++ E V TL
Sbjct: 464 PDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTL 523

Query: 237 VRTMHKDMKTALPIYF----NLYGEKG 259
           +  M      A  + +    ++YG+ G
Sbjct: 524 LGKMQSQGLLANVVTYTTLVDIYGQSG 550



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN +VF  I + Y     +  +  V  EM+  G++P    + +++  + K   +      
Sbjct: 394 PNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALAT 453

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M   G++PD    N++++ + + G   K EE+  AM++   +   +TYNI+IN +G 
Sbjct: 454 FDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGE 513

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               E ++ L   + ++ L  +VVT+T+ +  Y +   ++  +E  E M   G  P    
Sbjct: 514 QERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTM 573

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI+A +     EQ     R M  D
Sbjct: 574 YNALINAYAQRGLSEQAINAFRVMRAD 600



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 79/153 (51%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G++P   + + ++TA    G   + E +  ++ + GL P T   N++L  Y + G  +  
Sbjct: 286 GLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDA 345

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E +++ ME+  ++ D  TY++LI+ Y   G  E    + + + A  ++P+   ++  LA+
Sbjct: 346 ESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILAS 405

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           Y  +  +++  ++  EM ++G  PD     V+I
Sbjct: 406 YRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMI 438



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 1/198 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A F+ M+  G+ P   +   L+  + K+G+  K E +   M +SG  P T   N M+N
Sbjct: 450 ALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMIN 509

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +G   ++E ++ +L  M+     A++ TY  L++IYG+ G  +      + + +  LKP
Sbjct: 510 SFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKP 569

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
               + + + AY+++ L  + +  F  M   G  P       LI+A   + +  +  +++
Sbjct: 570 SSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVL 629

Query: 238 RTMHK-DMKTALPIYFNL 254
           + M + D+K  +  Y  L
Sbjct: 630 QYMKENDLKPDVVTYTTL 647



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D   +  +M+  G+   + ++  L+  Y ++G        +  M   GLKP + + N+
Sbjct: 517 WEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNA 576

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y + G  E+       M        +   N LIN +G      +   + Q +    
Sbjct: 577 LINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKEND 636

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LKPDVVT+T+ + A  R + + +   ++EEM  +GC PD     +L SA
Sbjct: 637 LKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSA 685


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 101/187 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + EEM+  GI P + ++  L++   + G +    G  ++M ++G KP+    N+
Sbjct: 335 LKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNA 394

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ L+G  G+F +M  V   +    +  D+ T+N L+ ++G+ G   ++ G+F+ +    
Sbjct: 395 LIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSG 454

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+  T+ S +++YSR  L+ + +EI++ MI+AG YPD  T   ++SA +   + EQ  
Sbjct: 455 YVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAE 514

Query: 235 TLVRTMH 241
            L   M 
Sbjct: 515 KLFAEME 521



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 3/182 (1%)

Query: 43  TPNLFVFIFS---IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           T N+ + ++S   + + D  A+ + MK  GI     ++  L++   +     +   V ++
Sbjct: 215 TYNVVLHVYSKIAVPWKDVVALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDE 274

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  +G +PD    NS+L++YG+    ++   VL  ME G     + TYN LI+ Y + G 
Sbjct: 275 MRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGL 334

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++   L + +  K ++PDV+T+T+ ++   R       +  ++EM+  GC P+  T   
Sbjct: 335 LKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNA 394

Query: 220 LI 221
           LI
Sbjct: 395 LI 396



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  AVF++++  G  P + +   LL  + + G  ++  GV  +M KSG  P+     S
Sbjct: 405 FPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVS 464

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++  E+   M +     DISTYN +++   RGG  E+ E LF  +    
Sbjct: 465 LISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLD 524

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            +PD ++++S L AY+  K   +   + E++         G  K L+
Sbjct: 525 CRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLV 571



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   SK  N+++ E    ++ +     D  V+N+M+++YG+    +K+EE+L+ M+  S
Sbjct: 570 LVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSS 629

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                +TYN L+++Y R G  EK E +   + +   +PD  ++ + + AY RK   +   
Sbjct: 630 INLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEAS 689

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +F EM  +G  PD  T  + + +  +    E+   LVR M
Sbjct: 690 RLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYM 730



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+    F E+ R   +  +     +++ Y K   V K E +++ M  S +   T   NS
Sbjct: 580 LSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNS 639

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y RLG  EK E +LT ++      D  +YN +I  YGR G +++   LF  + +  
Sbjct: 640 LMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSG 699

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           L PD+VT+   + +Y    ++   +++   M+  GC P+  T
Sbjct: 700 LIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERT 741



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 1/191 (0%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQM 100
           +T  +  F  +  F DA AVF  M   GI P + ++ ++L  YSK     K    +++ M
Sbjct: 181 YTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVALVDSM 240

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
              G+  D +  N++++   R   +++  +V   M    +  D  T+N L+++YG+    
Sbjct: 241 KNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMH 300

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++  G+ + +      P VVT+ S +++Y +  L +   E+ EEM   G  PD  T   L
Sbjct: 301 DEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTL 360

Query: 221 ISACSSEDQIE 231
           IS      +I+
Sbjct: 361 ISGLDRAGKID 371



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 92/186 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   ++EM R G  P + ++  L+  +   G   +   V + +  +G  PD    N++L 
Sbjct: 373 AIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLA 432

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M+K  Y  +  TY  LI+ Y R G  ++   +++ +    + P
Sbjct: 433 VFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYP 492

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + L+A +R   + +  ++F EM +  C PD  +   L+ A ++  +++++  L 
Sbjct: 493 DISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALS 552

Query: 238 RTMHKD 243
             ++ +
Sbjct: 553 EDIYAE 558



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +   MK   I  +  ++  L+  YS+ G+  KCE ++ ++  SG +PD +  N+M+  YG
Sbjct: 621 ILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYG 680

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R GQ ++   + + M+      DI TYNI +  Y      E+   L + +  +  KP+  
Sbjct: 681 RKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNER 740

Query: 181 TWTSRLAAYSR 191
           T+ S L  Y R
Sbjct: 741 TYNSILQEYCR 751



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/215 (19%), Positives = 96/215 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +F EM+ L   P   S+  LL AY+    + K + +   ++   ++    ++ +
Sbjct: 510 WEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKT 569

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +  ++    + E+    + +   + DI+  N ++++YG+   ++K+E +   +    
Sbjct: 570 LVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSS 629

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +     T+ S +  YSR     +C  I  E+  +G  PD  +   +I A   + Q+++ +
Sbjct: 630 INLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEAS 689

Query: 235 TLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYI 269
            L   M         + +N++ +  VA S   + I
Sbjct: 690 RLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAI 724



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 49/111 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  E+K  G  P   S+  ++ AY + G + +   + ++M  SGL PD    N  +  Y 
Sbjct: 656 ILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYV 715

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
               FE+  +++  M       +  TYN ++  Y R G I   +    +LP
Sbjct: 716 ANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNLP 766



 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 36/172 (20%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG---------- 155
           +PD     ++++ + R  +F     V   M        I TYN+++++Y           
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234

Query: 156 --------------------------RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
                                     RG   ++   +F  + A   +PD VT+ S L  Y
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY 294

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            + +++   + + +EM   GC P   T   LIS+   +  +++   L   M 
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEME 346


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 3/179 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++++A  V +EM+  G  P + ++  LL+A+ + G       + + M   G++PD F   
Sbjct: 238 WYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYT 297

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+L+ Y R G+ E+  E+   M   +   +  T+N LI ++G+     +M  +F+ + A 
Sbjct: 298 SLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQAC 357

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQ 229
            ++PD+VTW S L A+ +  +Y   L++F  M  AG  PD  T  +LI A   C S DQ
Sbjct: 358 GVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQ 416



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 84/161 (52%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FEEMK  GI P   ++   +TA +      +   +  QM  S   PD    N++L++YG
Sbjct: 175 LFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYG 234

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G + +   VL  ME      +I TYN L++ +GR G       +  S+ +K ++PDV 
Sbjct: 235 KAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVF 294

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           T+TS L+AYSR     + +EI+ +M  + C P+  T   LI
Sbjct: 295 TYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALI 335



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 93/180 (51%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           + M   GI P + ++  LL+AYS+ G V +   + NQM  S   P++F  N+++ ++G+ 
Sbjct: 282 DSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKN 341

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
             F +M  +   M+      DI T+N L+  +G+ G   ++  +F+ +     +PD  T+
Sbjct: 342 KNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATF 401

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
              + AY R     + L I++ M+ AGC PD  T   L++A + E + E    ++  +++
Sbjct: 402 NILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNR 461



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++++ M + G TP + +   LL A ++ G     E +++++++S  KP+     SML+
Sbjct: 417 ALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLH 476

Query: 118 LYGRLGQFEKMEEVLT-----------------------------------AMEKGSYAA 142
            Y   G+ EK++E++                                    AM    Y +
Sbjct: 477 AYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLS 536

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D ST+N +I++YG+ G ++K    F  L +  L+PDVVT+   +  Y R+ +YR+C    
Sbjct: 537 DTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATL 596

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            E + AG  PD  +   +I + S   Q+   T +   M
Sbjct: 597 RECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEM 634



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 95/202 (47%), Gaps = 5/202 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN---QMHKSGLKPDTFV 111
           F +A   FE+MK  G  P++ ++ +++  Y K G     E ++    +M   G++PD + 
Sbjct: 133 FKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGR--SWENILELFEEMKAQGIQPDEYT 190

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N+ +         E+  E+ T M+  +   D  TYN L+++YG+ G+  +   + + + 
Sbjct: 191 YNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEME 250

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +    P++VT+   L+A+ R  L     E+ + M+  G  PD  T   L+SA S   ++E
Sbjct: 251 SAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVE 310

Query: 232 QVTTLVRTMHKDMKTALPIYFN 253
           Q   +   M     T     FN
Sbjct: 311 QAMEIYNQMRTSNCTPNSFTFN 332



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P++F +  + S Y        A  ++ +M+    TP   +   L+  + K  N ++   +
Sbjct: 291 PDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVI 350

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M   G++PD    NS+L  +G+ G + ++ +V   M+K  +  D +T+NILI  YGR
Sbjct: 351 FEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGR 410

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  ++   ++  +      PD+ T+ + LAA +R+  +     I +E+  +   P+   
Sbjct: 411 CGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIA 470

Query: 217 AKVLISACSSEDQIEQVTTLVRTMH 241
              ++ A ++  ++E++  +V T+H
Sbjct: 471 YASMLHAYANGGELEKLKEMVDTLH 495



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%)

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
           YSK   V + E     M   G   DT   N+M+++YG+ G  +K  +    +       D
Sbjct: 513 YSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPD 572

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TYN L+ +YGR G   K E   +   A    PD+V++ + + +YS+         IF 
Sbjct: 573 VVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFH 632

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           EM+  G  PD  T    +    +     +  ++V+ MHK
Sbjct: 633 EMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHK 671



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 2/194 (1%)

Query: 47  FVFIFS--IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           FV ++S      +A   F  M+  G      +   +++ Y K G + K       +  +G
Sbjct: 509 FVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTG 568

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           L+PD    N ++ +YGR G + K E  L          D+ +YN +I  Y + G +    
Sbjct: 569 LEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSAT 628

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            +F  + +  ++PD  T+ + +  Y    ++   L + + M   GC PD  T + L+ A 
Sbjct: 629 RIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAY 688

Query: 225 SSEDQIEQVTTLVR 238
               + E+V  +++
Sbjct: 689 CKIGKFEEVERILK 702



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN F F   I        FS+   +FE+M+  G+ P + +   LL A+ K G  ++   
Sbjct: 325 TPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLK 384

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V   M K+G +PD    N ++  YGR G  ++   +   M +     D++T+N L+    
Sbjct: 385 VFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALA 444

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           R G  E  E +   L     KP+ + + S L AY+        LE  +EM+D
Sbjct: 445 REGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGE----LEKLKEMVD 492



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 8/196 (4%)

Query: 72  PTMKSHMLL--LTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKM 128
           P + S  LL  +    + G   K   V N M +S   +PD   I  ML + GR  Q   +
Sbjct: 42  PNLSSSELLSIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTV 101

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             +  ++ +  Y  D+  Y  LI+   R    ++  G F+ +     +P +VT+   +  
Sbjct: 102 SRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDL 161

Query: 189 YSRK-KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247
           Y +K + +   LE+FEEM   G  PD  T    I+AC+S    E+ T L   M     T 
Sbjct: 162 YGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTP 221

Query: 248 LPIYFN----LYGEKG 259
             + +N    +YG+ G
Sbjct: 222 DRVTYNALLDVYGKAG 237



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 45  NLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           N  +F +S +   S A  +F EM   GI P   ++   +  Y   G   +   V+  MHK
Sbjct: 612 NTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHK 671

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVL 132
           +G KPD     ++++ Y ++G+FE++E +L
Sbjct: 672 TGCKPDEVTYRTLVDAYCKIGKFEEVERIL 701


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 100/185 (54%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA ++  EM+R G +P   ++ LL+ AY+  G       V+ +M  SG++P+++V + +L
Sbjct: 415 DAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRIL 474

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y   G+++K  +VL  M     + D   YN++I+ +G+   ++     F  +  + ++
Sbjct: 475 ASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQ 534

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VTW + +  + +   + +  E+FE M ++GC P   T  ++I++   +++ E V TL
Sbjct: 535 PDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTL 594

Query: 237 VRTMH 241
           +  M 
Sbjct: 595 LGKMQ 599



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 79/153 (51%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G++P   + + ++TA    G   + E +  ++ + GL P T   N++L  Y + G  +  
Sbjct: 357 GLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDA 416

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E +++ ME+  ++ D  TY++LI+ Y   G  E    + + + A  ++P+   ++  LA+
Sbjct: 417 ESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILAS 476

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           Y  +  +++  ++  EM ++G  PD     V+I
Sbjct: 477 YRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMI 509



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 42/201 (20%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A F+ M+  G+ P   +   L+  + K+G+  K E +   M +SG  P T   N M+N
Sbjct: 521 ALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMIN 580

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA----- 172
            +G   ++E ++ +L  M+     A++ TY  L       G  E+    F+ + A     
Sbjct: 581 SFGEQERWEDVKTLLGKMQSQGLLANVVTYTTL-------GLSEQAINAFRVMRADGLKP 633

Query: 173 ------------------------------KRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
                                           LKPDVVT+T+ + A  R + + +   ++
Sbjct: 634 SVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVY 693

Query: 203 EEMIDAGCYPDGGTAKVLISA 223
           EEM  +GC PD     +L SA
Sbjct: 694 EEMTLSGCTPDRKARAMLRSA 714


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 98/183 (53%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++   M+   I+P + ++  ++  Y K G   +  G+ + M +SG++PD    N++++
Sbjct: 359 AASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLID 418

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y +LG+F+        ME+    AD+ TYN LI+ YG+ G  +   GLF  + A+ L P
Sbjct: 419 IYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVP 478

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+T+++ + AYS+  +++    IF E   AG  PD      LI +C     +E    L+
Sbjct: 479 NVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLL 538

Query: 238 RTM 240
           + M
Sbjct: 539 QEM 541



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 5/217 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSM 115
           +A  VF+ MK+ G  P + ++  ++ A  K G ++ K   +  +M K G++PD    NS+
Sbjct: 252 EALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSL 311

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + +  R   +E  + V   M++     DI TYN LI+   +GG +E    +  S+  K +
Sbjct: 312 IAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNI 371

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+++ +  Y +   +   + ++ +M ++G  PD  +   LI   +   + +   T
Sbjct: 372 SPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALT 431

Query: 236 LVRTMHK-DMKTALPIY---FNLYGEKGVARSNLGQY 268
             + M +  +K  +  Y    + YG++G  +   G +
Sbjct: 432 ACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLF 468



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 9/205 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  ++ +MK  G+ P   S+  L+  Y+K G           M + GLK D    N+
Sbjct: 391 FEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNA 450

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ YG+ G+++    +   M+      ++ TY+ LI+ Y + G  +    +F       
Sbjct: 451 LIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAG 510

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKPDVV ++S + +  +  L    + + +EM  AG  P+  T   LI A     Q++ V 
Sbjct: 511 LKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVE 570

Query: 235 TLVRTMHKDMKTALPI-YFNLYGEK 258
                     K  +PI  FN  G++
Sbjct: 571 A--------AKGNMPINVFNKVGDR 587



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 1/201 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D+  VF EM+R GI   + ++  L+ A  K G +     +++ M    + P+    ++
Sbjct: 321 WEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYST 380

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ YG+LG FE+   +   M++     D  +YN LI+IY + G  +      + +    
Sbjct: 381 MIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVG 440

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LK DVVT+ + + AY ++  Y+    +F++M   G  P+  T   LI A S     +  T
Sbjct: 441 LKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDAT 500

Query: 235 TL-VRTMHKDMKTALPIYFNL 254
           ++ V      +K  + +Y +L
Sbjct: 501 SIFVEFKRAGLKPDVVLYSSL 521



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 97/195 (49%), Gaps = 5/195 (2%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++++   + G V     V N+  K+G   + +  ++M++ YGR G+  +  +V  AM+K 
Sbjct: 204 IMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKA 263

Query: 139 SYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
               ++ TYN +I+  G+GG  ++K   +F+ +  + ++PD +T+ S +A  SR  L+  
Sbjct: 264 GCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWED 323

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KDMKTALPIYFNL-- 254
              +F EM   G   D  T   LI A     Q+E   +++ +M  K++   +  Y  +  
Sbjct: 324 SQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMID 383

Query: 255 -YGEKGVARSNLGQY 268
            YG+ G     +G Y
Sbjct: 384 GYGKLGCFEEAIGLY 398



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 9/195 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +F++MK  G+ P + ++  L+ AYSK G       +  +  ++GLKPD  + +S
Sbjct: 461 YKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSS 520

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG--------L 166
           +++   + G  E    +L  M +     +I TYN LI+ YGR G ++ +E         +
Sbjct: 521 LIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINV 580

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           F  +  +  +    T TS+  A     +    + +F EM   G  P+  T   +++ACS 
Sbjct: 581 FNKVGDRSTEIICKTLTSQQNANDHTGVL-AAVSVFHEMQQFGLKPNVVTFSAILNACSR 639

Query: 227 EDQIEQVTTLVRTMH 241
              +++ + L+  M 
Sbjct: 640 CSSLQEASVLLEQMR 654



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 88/183 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FEEM++ G+ P   +   L+   S+       + V  +M + G++ D F  N++++   
Sbjct: 292 IFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVC 351

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + GQ E    ++++M   + + ++ TY+ +I+ YG+ G  E+  GL+  +    ++PD V
Sbjct: 352 KGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRV 411

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + +  Y++   +   L   ++M   G   D  T   LI A   + + +    L   M
Sbjct: 412 SYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKM 471

Query: 241 HKD 243
             +
Sbjct: 472 KAE 474



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 115 MLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTY-NILINIYGRGGFIEKMEGLFQSLPA 172
           +L   G  G++E+  +    M ++G   ++ S   +I+I+  GR G +E    +F     
Sbjct: 168 LLRELGNRGEWERALQGYEWMVQQGHLRSEWSKLASIMISTLGRLGKVEIALDVFNRAQK 227

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED-QIE 231
                +V  +++ ++AY R    R  L++F+ M  AGC P+  T   +I AC      ++
Sbjct: 228 AGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLK 287

Query: 232 QVTTLVRTMHKDMKTALPIYFN 253
           +   +   M K+      I FN
Sbjct: 288 KALDIFEEMQKEGVEPDRITFN 309


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 101/187 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + EEM+  GI P + ++  L++   + G +    G  N+M ++G KP+    N+
Sbjct: 333 LEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNA 392

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ L+G  G+F +M  V   +    +  D+ T+N L+ ++G+ G   ++ G+F+ +    
Sbjct: 393 LIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSG 452

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+  T+ S +++YSR  L+ + +EI++ MI+AG +PD  T   ++SA +   + EQ  
Sbjct: 453 YVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAE 512

Query: 235 TLVRTMH 241
            L   M 
Sbjct: 513 KLFAEME 519



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 90/186 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SD    F E++R   +  +     +++ Y K G V K E +++ M +S +   T   NS
Sbjct: 578 LSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNS 637

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y RLG  EK E +LT ++      D  +YN +I  YGR G +++   LF  +    
Sbjct: 638 LMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSG 697

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD+VT+   + +Y    ++   +++   M+  GC P+  T   ++    S  +I    
Sbjct: 698 LVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGK 757

Query: 235 TLVRTM 240
           + +  +
Sbjct: 758 SFISNL 763



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 85/161 (52%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   SK  N++  E    ++ +     D  V+N+M+++YG+ G  +K+EE+L+ M++ S
Sbjct: 568 LVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESS 627

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                +TYN L+++Y R G  EK E +   + + R +PD  ++ + + AY RK   +   
Sbjct: 628 INLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEAS 687

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +F EM  +G  PD  T  + + +  +    E+   LVR M
Sbjct: 688 RLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYM 728



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 96/182 (52%), Gaps = 3/182 (1%)

Query: 43  TPNLFVFIFS---IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           T N+ + ++S   + + +  A+ + M++ GI     ++  L++   +     +   V ++
Sbjct: 213 TYNVVLHVYSKIAVPWKEVLALVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDE 272

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  +G +PD   +NS+L++YG+  ++++   VL  ME+G     + TYN LI+ Y + G 
Sbjct: 273 MRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGL 332

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E+   L + +  K ++PDV+T+T+ ++   R       +  + EM+  GC P+  T   
Sbjct: 333 LEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNA 392

Query: 220 LI 221
           LI
Sbjct: 393 LI 394



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +   VF+E++  G  P + +   LL  + + G   +  GV  +M KSG  P+     S
Sbjct: 403 FPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVS 462

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++  E+   M +     DISTYN +++   RGG  E+ E LF  +    
Sbjct: 463 LISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLD 522

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            +PD ++++S L AY+  K   +   + E++         G  K L+
Sbjct: 523 SRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLV 569



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 1/178 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
           F DA AVF  M   G+ P + ++ ++L  YSK     K    +++ M K G+  D +  N
Sbjct: 192 FRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLALVDSMRKDGIPLDRYTYN 251

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   R   +++  +V   M    +  D  T N L+++YG+    ++  G+ + +   
Sbjct: 252 TLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQG 311

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              P VVT+ S +++Y +  L     ++ EEM   G  PD  T   L+S      +I+
Sbjct: 312 GCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKID 369



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 92/186 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + EM R G  P + ++  L+  +   G   +   V +++  +G  PD    N++L 
Sbjct: 371 AIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLA 430

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M+K  Y  +  TY  LI+ Y R G  ++   +++ +    + P
Sbjct: 431 VFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHP 490

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + L+A +R   + +  ++F EM +    PD  +   L+ A ++  +++++ +L 
Sbjct: 491 DISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLS 550

Query: 238 RTMHKD 243
             ++ +
Sbjct: 551 EDIYAE 556



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 106/265 (40%), Gaps = 40/265 (15%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + +V + S Y     F  A  +++ M   GI P + ++  +L+A ++ G   + E +  +
Sbjct: 458 DTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAE 517

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKM------------------------------- 128
           M     +PD    +S+L+ Y    + +KM                               
Sbjct: 518 MENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNN 577

Query: 129 ----EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
               E+    + +   + DI+  N +I+IYG+ G ++K+E +   +    +     T+ S
Sbjct: 578 LSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNS 637

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
            +  YSR     +C  I  E+  +   PD  +   +I A   + Q+++ + L   M    
Sbjct: 638 LMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSG 697

Query: 245 KTALPIYFNLYGEKGVARSNLGQYI 269
                + +N++ +  VA S   + I
Sbjct: 698 LVPDIVTYNIFVKSYVANSMFEEAI 722



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/137 (19%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEG 165
           PD     ++++   R  +F     V   M        + TYN+++++Y +     +++  
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L  S+    +  D  T+ + ++   R+ LY+   ++F+EM  AG  PD  T   L+    
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 226 SEDQIEQVTTLVRTMHK 242
              + ++   +++ M +
Sbjct: 294 KARRYDEAIGVLKEMEQ 310



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 47/111 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  E+K     P   S+  ++ AY + G + +   + ++M  SGL PD    N  +  Y 
Sbjct: 654 ILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYV 713

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
               FE+  +++  M       +  TYN ++  Y   G I   +    +LP
Sbjct: 714 ANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLP 764


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  + +EMK +   P + S+  ++ +  ++G + +   +  +M + G  P+++  NS
Sbjct: 152 FDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNS 211

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y R G++EK   +   ME      D+ TYN +I++ GRGG   + EG+F  +  K 
Sbjct: 212 LLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKG 271

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC----SSEDQI 230
             PD VT+ + L AYS+     R  ++ + M  AGC PD  T  +L+ A     S+ + +
Sbjct: 272 CTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAM 331

Query: 231 EQVTTLVRTMHKDMKTALPIYFNLYGEKG 259
           +    L    H     +     N+YG  G
Sbjct: 332 QIFHELKAAGHSPNLVSFSALINMYGRLG 360



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 1/200 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
             +A A+FE MK  G +P + ++  L+ A +K    +    G+  +M ++G++P+    N
Sbjct: 81  LKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYN 140

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M+N    L  F+   ++L  M+  +   ++ +Y  +IN  GR G +++   LF+ +   
Sbjct: 141 CMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKEL 200

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P+  T+ S L AY+R+  Y + + +F  M D GC PD  T   +I  C       + 
Sbjct: 201 GRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEA 260

Query: 234 TTLVRTMHKDMKTALPIYFN 253
             +   M +   T   + +N
Sbjct: 261 EGVFLEMQRKGCTPDRVTYN 280



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 20/199 (10%)

Query: 16  RAPHSWNFNYL--------PYPSHFMLINFLLLQH---TPNLFVFIFSI-------YFSD 57
           R+P+SW +N L         Y     L  F+ ++     P+L+ +   I        F++
Sbjct: 202 RSPNSWTYNSLLKAYAREGRYEKAMCL--FVGMEDEGCIPDLYTYNTVIDMCGRGGLFAE 259

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM+R G TP   ++  +L AYSK     +   ++  M ++G  PD +  N +L+
Sbjct: 260 AEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLD 319

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G+ G   +  ++   ++   ++ ++ +++ LIN+YGR G+ E+ E  +  + A    P
Sbjct: 320 AAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVP 379

Query: 178 DVVTWTSRLAAYSRKKLYR 196
           +   +   + +YS   +Y+
Sbjct: 380 NATAYCGLMNSYSHHGMYK 398



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++++ GR G+     E+   M K   A  +  Y  L++ Y + G +++   LF+++  K
Sbjct: 35  TIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEK 94

Query: 174 RLKPDVVTWTSRLAAYSRKKLYR--RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              P+V+T+ + + A + K+ YR    + +FEEM  AG  P+  T   +++AC      +
Sbjct: 95  GCSPNVLTYNTLINACT-KRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFD 153

Query: 232 QVTTLVRTM 240
             + +++ M
Sbjct: 154 TASQILKEM 162



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/172 (19%), Positives = 80/172 (46%), Gaps = 3/172 (1%)

Query: 74  MKSH--MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           +K H  + +++   + G +     +   M K+G+ P      ++L+ Y + G  ++   +
Sbjct: 28  LKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWAL 87

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
             AM++   + ++ TYN LIN   +  + +  + GLF+ +    ++P+ +T+   + A  
Sbjct: 88  FEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACV 147

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
              L+    +I +EM    C P+  +   +I++     ++++   L   M +
Sbjct: 148 CLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKE 199


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 2/185 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  EM+  G +P++ ++  L++AY++ G + +   + NQM + G KPD F   ++L
Sbjct: 332 EAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRL 175
           + + R G+ E    +   M       +I T+N  I +YG RG F++ M+ +F  +    L
Sbjct: 392 SGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMK-IFDEINVCGL 450

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+VTW + LA + +  +      +F+EM  AG  P+  T   LISA S     EQ  T
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510

Query: 236 LVRTM 240
           + R M
Sbjct: 511 VYRRM 515



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H++ EE+    I P       L+   SK   + + E   +++ + G  PD   +NSM+++
Sbjct: 579 HSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSI 638

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           YGR     K  EVL  M++  +   ++TYN L+ ++ R     K E + + + AK +KPD
Sbjct: 639 YGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPD 698

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           ++++ + + AY R    R    IF EM D+G  PD  T    I + +++   E+   +VR
Sbjct: 699 IISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758

Query: 239 TMHK 242
            M K
Sbjct: 759 YMIK 762



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 92/187 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  +M   G  P + ++  LL+ + + G V     +  +M  +G KP+    N+
Sbjct: 365 LDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNA 424

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            + +YG  G+F  M ++   +     + DI T+N L+ ++G+ G   ++ G+F+ +    
Sbjct: 425 FIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+  T+ + ++AYSR   + + + ++  M+DAG  PD  T   +++A +     EQ  
Sbjct: 485 FVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE 544

Query: 235 TLVRTMH 241
            ++  M 
Sbjct: 545 KVLAEME 551



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++ E+MK  GI P   ++  L+T   +     +   V  +M  +G   D    N++L++Y
Sbjct: 265 SLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVY 324

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+  + ++  +VL  ME   ++  I TYN LI+ Y R G +++   L   +  K  KPDV
Sbjct: 325 GKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDV 384

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            T+T+ L+ + R       + IFEEM +AGC P+  T    I
Sbjct: 385 FTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFI 426



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 84/179 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F D   +F+E+   G++P + +   LL  + + G  ++  GV  +M ++G  P+    N+
Sbjct: 435 FVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNT 494

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G FE+   V   M       D+STYN ++    RGG  E+ E +   +   R
Sbjct: 495 LISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR 554

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            KP+ +T+ S L AY+  K       + EE+      P     K L+  CS  D + + 
Sbjct: 555 CKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEA 613



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV-AKCEGVINQM 100
           +T  +  F  S  + +A  VF++M+  G  PT+ ++ ++L  + K G    K   ++ +M
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
              G+ PD +  N+++    R    ++  +V   M+   ++ D  TYN L+++YG+    
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRP 330

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++   +   +      P +VT+ S ++AY+R  +    +E+  +M + G  PD  T   L
Sbjct: 331 KEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390

Query: 221 ISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
           +S      ++E    +   M     K        +  +YG +G
Sbjct: 391 LSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRG 433



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 91/184 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEM+  G  P + +    +  Y   G       + ++++  GL PD    N++L 
Sbjct: 403 AMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLA 462

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M++  +  +  T+N LI+ Y R G  E+   +++ +    + P
Sbjct: 463 VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + LAA +R  ++ +  ++  EM D  C P+  T   L+ A ++  +I  + +L 
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLA 582

Query: 238 RTMH 241
             ++
Sbjct: 583 EEVY 586



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F E+K  G +P + +   +++ Y +   V K   V++ M + G  P     NS++
Sbjct: 612 EAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLM 671

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++ R   F K EE+L  +       DI +YN +I  Y R   +     +F  +    + 
Sbjct: 672 YMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIV 731

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PDV+T+ + + +Y+   ++   + +   MI  GC P+  T   ++  
Sbjct: 732 PDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+   VF+EMKR G  P  ++   L++AYS+ G+  +   V  +M  +G+ PD    N++
Sbjct: 471 SEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTV 530

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L    R G +E+ E+VL  ME G    +  TY  L++ Y  G  I  M  L + + +  +
Sbjct: 531 LAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVI 590

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +P  V   + +   S+  L       F E+ + G  PD  T   ++S
Sbjct: 591 EPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVS 637



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 1/186 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +F  ++  G +  + S+  L++A++ +G   +   V  +M + G KP     N +
Sbjct: 190 SSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVI 249

Query: 116 LNLYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           LN++G++G  + K+  ++  M+    A D  TYN LI    RG   ++   +F+ + A  
Sbjct: 250 LNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAG 309

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              D VT+ + L  Y +    +  +++  EM   G  P   T   LISA + +  +++  
Sbjct: 310 FSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAM 369

Query: 235 TLVRTM 240
            L   M
Sbjct: 370 ELKNQM 375



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 76/164 (46%), Gaps = 1/164 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++++   K G V+    + N + + G   D +   S+++ +   G++ +   V   ME+ 
Sbjct: 178 IVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEE 237

Query: 139 SYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                + TYN+++N++G+ G    K+  L + + +  + PD  T+ + +    R  L++ 
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             ++FEEM  AG   D  T   L+       + ++   ++  M 
Sbjct: 298 AAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEME 341



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 63/134 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ V + MK  G TP+M ++  L+  +S++ +  K E ++ ++   G+KPD    N+++ 
Sbjct: 648 ANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIY 707

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R  +      + + M       D+ TYN  I  Y      E+  G+ + +     +P
Sbjct: 708 AYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRP 767

Query: 178 DVVTWTSRLAAYSR 191
           +  T+ S +  Y +
Sbjct: 768 NQNTYNSIVDGYCK 781



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTA----MEKGSYAA--DISTYNILINIYGRGGF 159
           KP++   + +L     LG  +K +  L A    M++  Y +  D S   I+I++ G+ G 
Sbjct: 130 KPES-TSSELLAFLKGLGFHKKFDLALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKEGR 188

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +     LF  L       DV ++TS ++A++    YR  + +F++M + GC P   T  V
Sbjct: 189 VSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNV 248

Query: 220 LISACSSEDQ-IEQVTTLVRTMHKD 243
           +++          ++T+LV  M  D
Sbjct: 249 ILNVFGKMGTPWNKITSLVEKMKSD 273



 Score = 43.9 bits (102), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 47/103 (45%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S  F  +  +  E+   GI P + S+  ++ AY +   +     + ++M  SG+ PD   
Sbjct: 677 SADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVIT 736

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            N+ +  Y     FE+   V+  M K     + +TYN +++ Y
Sbjct: 737 YNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779



 Score = 40.0 bits (92), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 43/86 (50%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +   ++ +  +    DA  +F EM+  GI P + ++   + +Y+      +  GV+ 
Sbjct: 699 IISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQ 124
            M K G +P+    NS+++ Y +L +
Sbjct: 759 YMIKHGCRPNQNTYNSIVDGYCKLNR 784


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 106/207 (51%), Gaps = 4/207 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V  EM+R G++P  +++  L+ AY   G       V+ +M  S ++P+ +V + +L
Sbjct: 358 DAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRIL 417

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y   G+++K  +VL  ME      D   YN++I+ +G+   ++     F  + ++ ++
Sbjct: 418 SSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIE 477

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VTW + +  + R   + R  E+FEEM++ G  P   T  ++I++   +++ + V  L
Sbjct: 478 PDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNL 537

Query: 237 VRTMHKDMKTALPIYF----NLYGEKG 259
           +  M         + +    ++YG+ G
Sbjct: 538 LAHMRSQGLVPNSVTYTTLIDIYGKSG 564



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 11/225 (4%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN +VF  I S Y     +  +  V  EM+  G+ P    + +++  + K   +      
Sbjct: 408 PNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMAT 467

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M   G++PDT   N++++ + R G+ ++ EE+   M +G Y+   +T+NI+IN +G 
Sbjct: 468 FDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGD 527

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               + ++ L   + ++ L P+ VT+T+ +  Y +   +   +E  ++M  AG  P    
Sbjct: 528 QERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTM 587

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD-MKT---ALPIYFNLYGE 257
              LI+A +     EQ  +  R M  D +K    AL    N +GE
Sbjct: 588 YNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGE 632



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D   +   M+  G+ P   ++  L+  Y K+G        ++ M  +GLKP + + N+
Sbjct: 531 WDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNA 590

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y + G  E+      AM        +   N LIN +G      +   + Q +    
Sbjct: 591 LINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKEND 650

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LKPDVVT+T+ + A  R + + +   ++EEMI +GC PD     +L SA
Sbjct: 651 LKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSGCTPDRKARAMLRSA 699



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 77/153 (50%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G++    + + ++ A    G   + E +  +M  +GLKP T   N++L  Y + G  +  
Sbjct: 300 GLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDA 359

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E V++ ME+   + +  TY+ LI+ YG  G  E    + + + A  ++P+   ++  L++
Sbjct: 360 EFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSS 419

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           Y  K  +++  ++  EM ++G  PD     V+I
Sbjct: 420 YRDKGEWQKSFQVLREMENSGVRPDRVFYNVMI 452



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 1/198 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A F+ M   GI P   +   L+  + + G   + E +  +M + G  P     N M+N
Sbjct: 464 AMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMIN 523

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +G   +++ ++ +L  M       +  TY  LI+IYG+ G           + A  LKP
Sbjct: 524 SFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKP 583

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
               + + + AY+++ L  + +  F  M   G  P       LI+A   + +  +  T++
Sbjct: 584 SSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVL 643

Query: 238 RTMHK-DMKTALPIYFNL 254
           + M + D+K  +  Y  L
Sbjct: 644 QYMKENDLKPDVVTYTTL 661


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 101/187 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +  EM+R G++P   ++ LL+ AYS  G       V+ +M  + + P+++V + 
Sbjct: 342 LKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSR 401

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y   G+++K  +VL  M+      D   YN++I+ +G+   ++     F  + ++ 
Sbjct: 402 ILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEG 461

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PD VTW + +  + + +L+ R  E+FEEM++ G  P   T  ++I++   +++ + V 
Sbjct: 462 IQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVK 521

Query: 235 TLVRTMH 241
           TL+  M 
Sbjct: 522 TLMGNMR 528



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D   +   M+ LG+ P + ++  L+  Y K+G  +     +  M  +GLKP + + N+
Sbjct: 517 WDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNA 576

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y + G  E+       M   S    +   N LIN +G      +   + + +    
Sbjct: 577 LINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKEND 636

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LKPDVVT+T+ + A  R   + +   ++EEMI AGC PD     +L SA
Sbjct: 637 LKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTPDRKARAMLRSA 685



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 11/225 (4%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN +VF  I + Y     +  +  V +EMK  G+ P    + +++  + K   +      
Sbjct: 394 PNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDT 453

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M   G++PDT   N++++ + +    E+ EE+   M +  ++  ++T+NI+IN +G 
Sbjct: 454 FDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGE 513

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               + ++ L  ++ +  L P+VVT+T+ +  Y +   +   +E  E+M  AG  P    
Sbjct: 514 QERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTM 573

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKT----ALPIYFNLYGE 257
              LI+A + +   EQ     R M  D       AL    N +GE
Sbjct: 574 YNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGE 618



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 80/154 (51%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G++P   + + +++A   +G + + E +  +M  +GLKP T   N +L  Y + G  +  
Sbjct: 286 GLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDA 345

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E +++ ME+   + D  TY++LI+ Y   G  E    + + + A  + P+   ++  LA+
Sbjct: 346 EFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILAS 405

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           Y  +  +++  ++ +EM ++G  PD     V+I 
Sbjct: 406 YRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMID 439



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 5/218 (2%)

Query: 41  QHTPNLFVFIFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  +    HA+  F++M   GI P   +   L+  + K     + E +  
Sbjct: 431 RHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFE 490

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M + G  P     N M+N +G   +++ ++ ++  M       ++ TY  LI+IYG+ G
Sbjct: 491 EMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSG 550

Query: 159 -FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
            F + +E L + + +  LKP    + + + AY++K L  + +  F  M      P     
Sbjct: 551 RFSDAIECL-EDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLAL 609

Query: 218 KVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIYFNL 254
             LI+A   + +  +  ++++ M + D+K  +  Y  L
Sbjct: 610 NSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTL 647



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 79/185 (42%), Gaps = 2/185 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK--CEGVINQMHKSGLKPDTFVINSMLNL 118
           +   M++ G      ++ L++ +  ++  +     + + +++    L+ D  + N ++  
Sbjct: 206 LISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVG 265

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           + + G   K  E L  ++    +   +T   +I+  G  G I + E +F+ +    LKP 
Sbjct: 266 FAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPK 325

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
              +   L  Y +  + +    I  EM  +G  PD  T  +LI A S+  + E    +++
Sbjct: 326 TRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLK 385

Query: 239 TMHKD 243
            M  +
Sbjct: 386 EMEAN 390


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 35/220 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD-------- 108
           +A A+FEEMK  G+ P +K+   LL  Y++ G++ + E +I++M KSGL PD        
Sbjct: 334 EAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLV 393

Query: 109 ---------------------------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141
                                      TF+ + +L  Y   G+++K  EVL  M+  +  
Sbjct: 394 DAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVK 453

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            D   YN++I+ +G+   ++     +  + ++ ++PDVVTW + +  + +   + R  E+
Sbjct: 454 PDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAEL 513

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           FEEM + G  P   T  ++I++   +++ ++V  L+  M 
Sbjct: 514 FEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQ 553



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 77/153 (50%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P   + + +++A    G   + E +  +M + GLKP     N++L  Y R G  ++ 
Sbjct: 311 GLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEA 370

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E +++ MEK   + D  TY +L++ Y   G  E    L + + A+ ++P+   ++  LA+
Sbjct: 371 ESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILAS 430

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           Y  +  +++  E+  EM ++   PD     V+I
Sbjct: 431 YRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMI 463



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 35/205 (17%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  +FEEM+  G  P   ++ +++ +  +     + + ++ +M   GL P+     
Sbjct: 506 YHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYT 565

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM---------E 164
           +++++YG  G+F    + L AM+        + YN LIN + + G  E+          +
Sbjct: 566 TLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISD 625

Query: 165 GLFQSLPA--------------------------KRLKPDVVTWTSRLAAYSRKKLYRRC 198
           GL  SL A                            +KPDVVT+T+ + A  R   + + 
Sbjct: 626 GLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKV 685

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISA 223
             ++EEMI +GC PDG    +L SA
Sbjct: 686 PAVYEEMILSGCTPDGKARAMLRSA 710



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 11/225 (4%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F+F  I + Y     +     V  EMK   + P    + +++  + K   +      
Sbjct: 419 PNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMET 478

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M   G++PD    N++++ + + G  ++  E+   M++  Y    +TYNI+IN  G 
Sbjct: 479 YDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGE 538

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               ++++ L   + ++ L P+VVT+T+ +  Y     +   ++  E M  AG  P    
Sbjct: 539 QEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATM 598

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD----MKTALPIYFNLYGE 257
              LI+A +     EQ     R M  D       AL    N +GE
Sbjct: 599 YNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGE 643



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 95/217 (43%), Gaps = 3/217 (1%)

Query: 41  QHTPNLFVFIFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  +    HA+  ++ M   GI P + +   L+  + K G   +   +  
Sbjct: 456 RHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFE 515

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M + G  P     N M+N  G   ++++++ +L  M+      ++ TY  L++IYG  G
Sbjct: 516 EMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSG 575

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
                    +++ +  LKP    + + + A++++ L  + +  +  MI  G  P      
Sbjct: 576 RFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALN 635

Query: 219 VLISACSSEDQ-IEQVTTLVRTMHKDMKTALPIYFNL 254
            LI+A   + + IE  + L      D+K  +  Y  L
Sbjct: 636 SLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTL 672



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 82/178 (46%), Gaps = 2/178 (1%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTG--NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           M++ G      ++ L++ + ++T   ++   + +  ++    ++ D  ++N ++  + + 
Sbjct: 235 MRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFAKA 294

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G   +    L+ ++        ST+  +I+  G  G  E+ E +F+ +    LKP +  +
Sbjct: 295 GDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAF 354

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + L  Y+RK   +    I  EM  +G  PD  T  +L+ A ++  + E    L++ M
Sbjct: 355 NALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQM 412


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 105/202 (51%), Gaps = 4/202 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F+EM R  I P + ++  L+   SK+G ++    +++QMH  G+ P+    NS
Sbjct: 381 FDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNS 440

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   +  Q +K   +LT  +   +  DISTY+ILI    + G +E    +F+ L  K 
Sbjct: 441 ILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKG 500

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              DV  +T  +  +  + L+   L +  +M D GC PD  T +++I +   +D+ +   
Sbjct: 501 YNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAE 560

Query: 235 TLVRTMHKDMKTALPI-YFNLY 255
            L+R M   +   LP+ +++LY
Sbjct: 561 KLLREM---IARGLPLNFYDLY 579



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F +M    I P + +  +L+ A+ K G + + + V + M K G+KP+    NS++
Sbjct: 278 DAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y  + +  K + +   M +G    DI +Y+I+IN + +    ++   LF+ +  K + 
Sbjct: 338 DGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNII 397

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT++S +   S+       L++ ++M D G  P+  T   ++ A     Q+++   L
Sbjct: 398 PDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIAL 457

Query: 237 VRTMHKD 243
           + T  KD
Sbjct: 458 L-TKFKD 463



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 88/186 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F EM   GI+P + ++  L++ +   G +     + N+M    +KPD +  N +
Sbjct: 242 NEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNIL 301

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + + G+ ++ + V   M K     +  TYN L++ Y     + K + +F ++    +
Sbjct: 302 VNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGV 361

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+ +++  +  + + K +   + +F+EM      PD  T   LI   S   +I     
Sbjct: 362 NPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQ 421

Query: 236 LVRTMH 241
           LV  MH
Sbjct: 422 LVDQMH 427



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 79/176 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   VF+ M + GI P   ++  L+  Y     V K + + N M + G+ PD    + M+
Sbjct: 313 EGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMI 372

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + ++ +F++   +   M + +   D+ TY+ LI+   + G I     L   +  + + 
Sbjct: 373 NGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVP 432

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           P++ T+ S L A  +     + + +  +  D G  PD  T  +LI       ++E 
Sbjct: 433 PNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLED 488



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 93/196 (47%), Gaps = 5/196 (2%)

Query: 57  DAHAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  A  + ++R+    + P +  +  ++ +  K   V +   + ++M   G+ PD    +
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYS 264

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ +  LG+ +   ++   M   +   D+ T+NIL+N + + G +++ + +F  +  +
Sbjct: 265 ALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ 324

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +KP+ VT+ S +  Y   K   +   IF  M   G  PD  +  ++I+      + ++ 
Sbjct: 325 GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEA 384

Query: 234 TTLVRTMHKDMKTALP 249
             L + MH+  K  +P
Sbjct: 385 MNLFKEMHR--KNIIP 398



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM---LNLY 119
           ++M+  GI P + +  +L+  + + G +     V  ++ K G  PDT    ++   L L 
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLK 168

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G++ Q     + + A+    +  D  +Y  LI+   + G       L Q +    ++P+V
Sbjct: 169 GQIQQAFLFHDKVVAL---GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNV 225

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           V + + + +  + KL     ++F EM+  G  PD  T   LIS 
Sbjct: 226 VMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISG 269



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/185 (17%), Positives = 85/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +VF ++ ++G  P   +   L       G + +     +++   G   D     ++++
Sbjct: 139 AFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIH 198

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G+     ++L  ++      ++  YN +I+   +   + +   LF  + +K + P
Sbjct: 199 GLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISP 258

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+++ ++ +      +  +++F +MI     PD  T  +L++A   + ++++  T+ 
Sbjct: 259 DVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVF 318

Query: 238 RTMHK 242
             M K
Sbjct: 319 DMMMK 323



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/178 (17%), Positives = 80/178 (44%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +++  LG      S+  L+    K G       ++ ++  + ++P+  + N++++   ++
Sbjct: 179 DKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKV 238

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
               +  ++ + M     + D+ TY+ LI+ +   G ++    LF  +  + +KPDV T+
Sbjct: 239 KLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTF 298

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              + A+ +    +    +F+ M+  G  P+  T   L+       ++ +  ++  TM
Sbjct: 299 NILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTM 356


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 2/185 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  EM   G +P++ ++  L++AY++ G + +   + NQM + G KPD F   ++L
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRL 175
           + + R G+ E    +   M       +I T+N  I +YG RG F E M+ +F  +    L
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK-IFDEINVCGL 450

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+VTW + LA + +  +      +F+EM  AG  P+  T   LISA S     EQ  T
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510

Query: 236 LVRTM 240
           + R M
Sbjct: 511 VYRRM 515



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 93/187 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  +M   G  P + ++  LL+ + + G V     +  +M  +G KP+    N+
Sbjct: 365 LDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNA 424

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            + +YG  G+F +M ++   +     + DI T+N L+ ++G+ G   ++ G+F+ +    
Sbjct: 425 FIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+  T+ + ++AYSR   + + + ++  M+DAG  PD  T   +++A +     EQ  
Sbjct: 485 FVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE 544

Query: 235 TLVRTMH 241
            ++  M 
Sbjct: 545 KVLAEME 551



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 92/184 (50%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H++ EE+    I P       L+   SK   + + E   +++ + G  PD   +NSM+++
Sbjct: 579 HSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSI 638

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           YGR     K   VL  M++  +   ++TYN L+ ++ R     K E + + + AK +KPD
Sbjct: 639 YGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPD 698

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           ++++ + + AY R    R    IF EM ++G  PD  T    I + +++   E+   +VR
Sbjct: 699 IISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758

Query: 239 TMHK 242
            M K
Sbjct: 759 YMIK 762



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 7/216 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++   +F+E+   G++P + +   LL  + + G  ++  GV  +M ++G  P+    N+
Sbjct: 435 FTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNT 494

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G FE+   V   M       D+STYN ++    RGG  E+ E +   +   R
Sbjct: 495 LISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR 554

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+ +T+ S L AY+  K       + EE+      P     K L+  CS  D + +  
Sbjct: 555 CKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAE 614

Query: 235 TLV-----RTMHKDMKTALPIYFNLYGEKG-VARSN 264
                   R    D+ T L    ++YG +  VA++N
Sbjct: 615 RAFSELKERGFSPDI-TTLNSMVSIYGRRQMVAKAN 649



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++ E+MK  GI P   ++  L+T   +     +   V  +M  +G   D    N++L++Y
Sbjct: 265 SLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVY 324

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+  + ++  +VL  M    ++  I TYN LI+ Y R G +++   L   +  K  KPDV
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDV 384

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            T+T+ L+ + R       + IFEEM +AGC P+  T    I
Sbjct: 385 FTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFI 426



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV-AKCEGVINQM 100
           +T  +  F  S  + +A  VF++M+  G  PT+ ++ ++L  + K G    K   ++ +M
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
              G+ PD +  N+++    R    ++  +V   M+   ++ D  TYN L+++YG+    
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRP 330

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++   +   +      P +VT+ S ++AY+R  +    +E+  +M + G  PD  T   L
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390

Query: 221 ISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
           +S      ++E   ++   M     K        +  +YG +G
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRG 433



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F E+K  G +P + +   +++ Y +   VAK  GV++ M + G  P     NS++
Sbjct: 612 EAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM 671

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++ R   F K EE+L  +       DI +YN +I  Y R   +     +F  +    + 
Sbjct: 672 YMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIV 731

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PDV+T+ + + +Y+   ++   + +   MI  GC P+  T   ++  
Sbjct: 732 PDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 93/184 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++FEEM+  G  P + +    +  Y   G   +   + ++++  GL PD    N++L 
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M++  +  +  T+N LI+ Y R G  E+   +++ +    + P
Sbjct: 463 VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + LAA +R  ++ +  ++  EM D  C P+  T   L+ A ++  +I  + +L 
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLA 582

Query: 238 RTMH 241
             ++
Sbjct: 583 EEVY 586



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 1/186 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +F  ++  G +  + S+  L++A++ +G   +   V  +M + G KP     N +
Sbjct: 190 SSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVI 249

Query: 116 LNLYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           LN++G++G  + K+  ++  M+    A D  TYN LI    RG   ++   +F+ + A  
Sbjct: 250 LNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAG 309

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              D VT+ + L  Y +    +  +++  EM+  G  P   T   LISA + +  +++  
Sbjct: 310 FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAM 369

Query: 235 TLVRTM 240
            L   M
Sbjct: 370 ELKNQM 375



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++++   K G V+    + N + + G   D +   S+++ +   G++ +   V   ME+ 
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237

Query: 139 SYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                + TYN+++N++G+ G    K+  L + + +  + PD  T+ + +    R  L++ 
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             ++FEEM  AG   D  T   L+       + ++   ++  M
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM 340



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 64/136 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           + A+ V + MK  G TP+M ++  L+  +S++ +  K E ++ ++   G+KPD    N++
Sbjct: 646 AKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTV 705

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y R  +      + + M       D+ TYN  I  Y      E+  G+ + +     
Sbjct: 706 IYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGC 765

Query: 176 KPDVVTWTSRLAAYSR 191
           +P+  T+ S +  Y +
Sbjct: 766 RPNQNTYNSIVDGYCK 781



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTA----MEKGSYAA--DISTYNILINIYGRGGF 159
           KP++   + +L     LG  +K +  L A    M++  Y +  D S   I+I++ G+ G 
Sbjct: 130 KPES-TSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGR 188

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +     +F  L       DV ++TS ++A++    YR  + +F++M + GC P   T  V
Sbjct: 189 VSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNV 248

Query: 220 LISACSS-EDQIEQVTTLVRTMHKD 243
           +++          ++T+LV  M  D
Sbjct: 249 ILNVFGKMGTPWNKITSLVEKMKSD 273



 Score = 43.9 bits (102), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 47/103 (45%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S  F  +  +  E+   GI P + S+  ++ AY +   +     + ++M  SG+ PD   
Sbjct: 677 SADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVIT 736

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            N+ +  Y     FE+   V+  M K     + +TYN +++ Y
Sbjct: 737 YNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779



 Score = 40.4 bits (93), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 43/86 (50%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +   ++ +  +    DA  +F EM+  GI P + ++   + +Y+      +  GV+ 
Sbjct: 699 IISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQ 124
            M K G +P+    NS+++ Y +L +
Sbjct: 759 YMIKHGCRPNQNTYNSIVDGYCKLNR 784


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 43  TPNLFVF--IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP++  +  + S Y  D     A  + +EM+  G+ P + ++  L++   + G +     
Sbjct: 322 TPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALA 381

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
             ++M ++G  P+    N+++ L+G  G+F +M  V   +    Y  D+ T+N L++++G
Sbjct: 382 TYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFG 441

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G   ++ G+F+ +      P+  T+ S +++YSR  L+ + +EI++ MI+AG YPD  
Sbjct: 442 QNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDIS 501

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   ++SA +   + EQ   L   M
Sbjct: 502 TYNAVLSALARGGRWEQAEKLFAEM 526



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%)

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
            S+ + +  A+ + MK  GI     ++  L++   + G   +   V ++M  +G +PD  
Sbjct: 232 MSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKV 291

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             NS+L++YG+  + E+   VL  ME       + TYN LI+ Y + G +E+   L Q +
Sbjct: 292 TFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEM 351

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
             + +KPDVVT+T+ ++   R       L  + EM+  GC P+  T   LI
Sbjct: 352 EFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALI 402



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 96/186 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A + EM R G +P + ++  L+  +   G   +   V + +  +G  PD    N++L+
Sbjct: 379 ALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLS 438

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M+K  Y  +  TY  LI+ Y R G  ++   +++ +    + P
Sbjct: 439 VFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYP 498

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + L+A +R   + +  ++F EM+D  C PD  +   L+ A ++  +++++ TL 
Sbjct: 499 DISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLS 558

Query: 238 RTMHKD 243
             ++ +
Sbjct: 559 EDIYAE 564



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 77/139 (55%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++  AVF++++  G  P + +   LL+ + + G  ++  GV  +M K+G  P+     S
Sbjct: 411 FTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 470

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++  E+   M +     DISTYN +++   RGG  E+ E LF  +  + 
Sbjct: 471 LISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRD 530

Query: 175 LKPDVVTWTSRLAAYSRKK 193
            KPD ++++S L AY+  K
Sbjct: 531 CKPDELSYSSLLHAYANAK 549



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
           F DA AVF+ M   G+ P + ++ ++  AYSK     K    +++ M + G++ D +  N
Sbjct: 200 FRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYN 259

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   R G   +  +V   M+   +  D  T+N L+++YG+    E+  G+ + +   
Sbjct: 260 TLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENA 319

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              P VVT+ S ++AY +  L    LE+ +EM   G  PD  T   LIS      +I+
Sbjct: 320 GCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKID 377



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 91/186 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +    F+E++R   +  +     +++ Y K   V K E V++ M ++ +       NS++
Sbjct: 588 ETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLM 647

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++Y RLG  EK E +LT ++      D  +YN +I  YGR G +++   LF  +    +K
Sbjct: 648 HMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVK 707

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+VT+   + +Y    ++   +++   ++  GC P+  T   ++   S   ++ +  + 
Sbjct: 708 PDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSF 767

Query: 237 VRTMHK 242
           +  + K
Sbjct: 768 LSNLPK 773



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   +K  N+ + E    ++ +     D  V+N+M+++YG+    +K+EEVL+ M + S
Sbjct: 576 LVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENS 635

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                +TYN L+++Y R G  EK E +   + +  ++PD  ++ + + AY RK   +   
Sbjct: 636 INHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEAS 695

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
            +F EM  +G  PD  T  + I +  +    E+   LVR
Sbjct: 696 RLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVR 734



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 6/209 (2%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF  +   ++A A+ E        P   ++  L++A+S+ G       V  +M   G++P
Sbjct: 162 VFARAGCLAEASAILEA----APAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQP 217

Query: 108 DTFVINSMLNLYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
                N + + Y ++   ++++  ++ +M++     D  TYN LI+   R G   +   +
Sbjct: 218 ALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQV 277

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           F  + A   +PD VT+ S L  Y + + +   + + + M +AGC P   T   LISA   
Sbjct: 278 FDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVK 337

Query: 227 EDQIEQVTTLVRTMH-KDMKTALPIYFNL 254
           +  +E+   L + M  + MK  +  Y  L
Sbjct: 338 DGLLEEALELKQEMEFRGMKPDVVTYTTL 366



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 68/121 (56%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+   VF+EMK+ G  P   +++ L+++YS+ G   +   +  +M ++G+ PD    N++
Sbjct: 447 SEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAV 506

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   R G++E+ E++   M       D  +Y+ L++ Y     ++KM+ L + + A+R+
Sbjct: 507 LSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERI 566

Query: 176 K 176
           +
Sbjct: 567 E 567



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 95/236 (40%), Gaps = 40/236 (16%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + +V + S Y     F  A  +++ M   GI P + ++  +L+A ++ G   + E +  +
Sbjct: 466 DTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAE 525

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKM------------------------------- 128
           M     KPD    +S+L+ Y    + +KM                               
Sbjct: 526 MVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNN 585

Query: 129 ----EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
               E+    + +   + DI+  N +++IYG+   ++K+E +   +    +     T+ S
Sbjct: 586 LPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNS 645

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +  YSR     +C  I  E+  +G  PD  +   +I A   + Q+++ + L   M
Sbjct: 646 LMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEM 701


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 13/229 (5%)

Query: 33  MLINFLLLQHTPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L     L  TP+   +  +I        + +A A+  EM   G+TP + S+   + AY 
Sbjct: 517 LLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYG 576

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K G   +   ++ QM   GL P+    NS++   GR G++EK  ++L  +++ + A D+ 
Sbjct: 577 KNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLM 636

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +YN+ I+  G+ G  E+   L + +PA+ L PDV+++TS + A + +  + + L +   M
Sbjct: 637 SYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLM 696

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM------HKDMKTAL 248
              G  P   +  + I AC    + E+   LVR M      H+++  +L
Sbjct: 697 GAHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGLSHRNISNSL 745



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+  +  +I        +  A  +  +MK L +TP   ++   + A SK G   +   
Sbjct: 492 TPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVA 551

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M   GL PD     + ++ YG+ GQ+E+  E+L  M       ++ TYN +I   G
Sbjct: 552 LLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACG 611

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           RGG  EK   L + L    + PD++++   ++A  ++  +   L++  EM   G  PD  
Sbjct: 612 RGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVI 671

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           +    I AC++E + E+   L+  M
Sbjct: 672 SYTSAIRACNAEGEWEKALGLLNLM 696



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 96/202 (47%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S  + +A  V  +M+  G+TP + S+   + A    G       ++++M   G+ P+T  
Sbjct: 298 SGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIH 357

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            NS +   G+ GQ+EK  E+L  +       D +++N  I    + G  ++   L + +P
Sbjct: 358 FNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMP 417

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           AKRLKPD +++ S + A  +   +   LE+  +M   G  P+  ++ + I AC    + +
Sbjct: 418 AKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQ 477

Query: 232 QVTTLVRTMHKDMKTALPIYFN 253
           +   L+R M     T   I +N
Sbjct: 478 EGLELLRQMPAQGLTPNVITYN 499



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 93/191 (48%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +M   G+TP + S  + + A  + G   +   ++ QM   GL P+    NS +   G+ G
Sbjct: 450 QMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGG 509

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           Q+EK  ++L  M++ +   D  TYN  I    + G  ++   L + +P + L PDV+++T
Sbjct: 510 QWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYT 569

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + + AY +   + R +E+  +M   G  P+  T   +I AC    + E+   L++ + + 
Sbjct: 570 AAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKET 629

Query: 244 MKTALPIYFNL 254
                 + +NL
Sbjct: 630 AVAPDLMSYNL 640



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A +V  EM   G+TP   S+ + + A  ++G   +   V+ QM   G+ PD    ++
Sbjct: 266 WKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDA 325

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +   G  GQ+E   ++L  M     A +   +N  I   G+GG  EK   L + + A  
Sbjct: 326 AIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALG 385

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD  ++ S +AA ++   ++  LE+ +EM      PD  +    I AC    Q E   
Sbjct: 386 LTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMAL 445

Query: 235 TLVRTMHKDMKTALPIYFNLY----GEKG 259
            L R M     T   I  N+     GE+G
Sbjct: 446 ELRRQMPTKGLTPNVISSNIAIRACGERG 474



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEE-------MKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+     +I        ++E       M   G+TP + ++   +    K G   K   
Sbjct: 457 TPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALD 516

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M +  + PD+   NS +    + G++++   +L  M       D+ +Y   I+ YG
Sbjct: 517 LLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYG 576

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  E+   L + +P K L P+V+T+ S + A  R   + + L++ +E+ +    PD  
Sbjct: 577 KNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLM 636

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           +  + ISAC    + E+   L+R M
Sbjct: 637 SYNLAISACGKRGRWEEALDLLREM 661



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 87/194 (44%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +  EM  +G+TP   ++  ++T   K G   +   V+ +M   GL P+T   N  +   
Sbjct: 236 GLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRAC 295

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR G++++  EVL  ME      D+ +Y+  I   G GG  E    L   +  + + P+ 
Sbjct: 296 GRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNT 355

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           + + S + A  +   + + +E+  E+   G  PD  +    I+AC+   + ++   L++ 
Sbjct: 356 IHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKE 415

Query: 240 MHKDMKTALPIYFN 253
           M         I +N
Sbjct: 416 MPAKRLKPDAISYN 429



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 13/229 (5%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN   F  +I        +  A  +  E+  LG+TP   S    + A +K+G   +   
Sbjct: 352 APNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALE 411

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M    LKPD    NS +   G+ GQ+E   E+   M       ++ + NI I   G
Sbjct: 412 LLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACG 471

Query: 156 -RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            RG + E +E L + +PA+ L P+V+T+ S +    +   + + L++  +M +    PD 
Sbjct: 472 ERGRWQEGLE-LLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDS 530

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF----NLYGEKG 259
            T    I+ACS   + ++   L+R M     T   I +    + YG+ G
Sbjct: 531 ITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNG 579



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 2/200 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           + +A  + +EMK  G+     S+   +T   + G   K   ++ ++  + G+ P+ F  N
Sbjct: 126 WREALGILDEMKEGGVV-CAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYN 184

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S +   G   Q+E    +L  M       D  +YN  I   GRGG  E++ GL + +P+ 
Sbjct: 185 SAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSV 244

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD +T+ S +    ++  ++  L +  EM   G  P+  +  + I AC    + ++ 
Sbjct: 245 GLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEA 304

Query: 234 TTLVRTMHKDMKTALPIYFN 253
             ++R M     T   I ++
Sbjct: 305 VEVLRQMESQGVTPDVISYD 324



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 92/203 (45%), Gaps = 7/203 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN+F +  +I        +  A ++  EM    + P   S+   + A  + G   +  G
Sbjct: 177 SPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIG 236

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M   GL PD    NS++   G+ GQ+++   VLT M       +  +YN+ I   G
Sbjct: 237 LLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACG 296

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R G  ++   + + + ++ + PDV+++ + + A      +   +++ +EM   G  P+  
Sbjct: 297 RSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTI 356

Query: 216 TAKVLISACSSEDQIEQVTTLVR 238
                I AC    Q E+   L+R
Sbjct: 357 HFNSAIVACGKGGQWEKAVELLR 379



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 7/228 (3%)

Query: 33  MLINFLLLQHTPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L     L  TP+   F  +I        + +A  + +EM    + P   S+   + A  
Sbjct: 377 LLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACG 436

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K G       +  QM   GL P+    N  +   G  G++++  E+L  M       ++ 
Sbjct: 437 KGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVI 496

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN  I   G+GG  EK   L   +    + PD +T+ S +AA S++  ++  + +  EM
Sbjct: 497 TYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREM 556

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
              G  PD  +    I A     Q E+   L+R M     T   I +N
Sbjct: 557 PGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYN 604



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 7/218 (3%)

Query: 43  TPNLFVFIFSIYFSDAHAVFE-------EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP++  +  +I        +E       EM   G+ P        + A  K G   K   
Sbjct: 317 TPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVE 376

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ ++   GL PD    NS +    + G++++  E+L  M       D  +YN  I   G
Sbjct: 377 LLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACG 436

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +GG  E    L + +P K L P+V++    + A   +  ++  LE+  +M   G  P+  
Sbjct: 437 KGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVI 496

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           T    I  C    Q E+   L+  M +   T   I +N
Sbjct: 497 TYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYN 534



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M    + PD    NS +   GR GQ+E++  +L  M       D  TYN +I   G
Sbjct: 202 LLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCG 261

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  ++   +   + AK L P+ +++   + A  R   ++  +E+  +M   G  PD  
Sbjct: 262 KEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVI 321

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           +    I AC    Q E    L+  M         I+FN
Sbjct: 322 SYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFN 359



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 2/175 (1%)

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKGS 139
           L   + TG   +  G++++M + G+        + +   GR GQ+EK  E+L  + E+  
Sbjct: 117 LREAATTGKWREALGILDEMKEGGVVC-AHSYTTAITTCGRQGQWEKALELLREIPEQEG 175

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + ++  YN  I   G G   E    L + +  + + PD +++ S + A  R   + R +
Sbjct: 176 VSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVI 235

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
            +  EM   G  PD  T   +I+ C  E Q ++  +++  M     T   I +N+
Sbjct: 236 GLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNM 290


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 113/229 (49%), Gaps = 11/229 (4%)

Query: 43  TPN--LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN   FV IF  +       +A +++ +M+  G +P+++    LL  YS+       E 
Sbjct: 737 TPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDAEE 796

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++  + K+GL+ D  + N M++LY +LG + K   V   M++   + D +T+N LI +Y 
Sbjct: 797 LVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYS 856

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R   +++ + L + +      P++ T+T+ ++AY R + Y     +F+ + + GC PD  
Sbjct: 857 RNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDAT 916

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKD----MKTALPIYFNLYGEKGV 260
              V+I+      +  ++  ++  M  D      T + +  + YG+ G 
Sbjct: 917 AYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGA 965



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 84/174 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA  +FEEM+R G  P + ++  +++ Y + G V     +   M + G  PD    NS
Sbjct: 201 LSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNS 260

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ + R G+ E++E +   M     ++D  TYN +I++YG+ G   K E L+  +  + 
Sbjct: 261 VLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEG 320

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
             PD VT+T  +    +         +FE+M+ +   P       +I A +  D
Sbjct: 321 RCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKAD 374



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 102/207 (49%), Gaps = 7/207 (3%)

Query: 36   NFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            N L++ ++ N  V        +A A+  EM + G  P + ++  L++AY +       E 
Sbjct: 849  NTLIMLYSRNQMV-------QEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAEL 901

Query: 96   VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            V   + ++G KPD    N M+N+Y + G+  K+EEV+  M+   +   ++T ++L++ YG
Sbjct: 902  VFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYG 961

Query: 156  RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
            +GG   K E + ++LP   + PD + +TS + ++   K Y   +    +M DA   P   
Sbjct: 962  KGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHV 1021

Query: 216  TAKVLISACSSEDQIEQVTTLVRTMHK 242
            T    + A S  ++      L++ + +
Sbjct: 1022 TITCFVGAASVCERSSHALMLLKALSE 1048



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 4/205 (1%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           ++ +  +GITP  ++ +++  A+S+ GN+ +   +  QM ++G  P   V  ++L LY R
Sbjct: 728 YQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSR 787

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
                  EE++  ++K     D+  YN +I++Y + G   K   +F+ +      PD  T
Sbjct: 788 ETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATT 847

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLV 237
           + + +  YSR ++ +    +  EMI  G  P+  T   LISA       ED      ++ 
Sbjct: 848 FNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIA 907

Query: 238 RTMHKDMKTALPIYFNLYGEKGVAR 262
            T  K   TA  +  N+Y + G  R
Sbjct: 908 ETGCKPDATAYNVMINVYRKAGEHR 932



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 104/216 (48%), Gaps = 8/216 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+++ +  + S+Y        A ++F  M+  G TP   ++  +L A+++ G + + E +
Sbjct: 218 PDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERI 277

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M  +    D    N+M+++YG+ G   K EE+   M++     D  T+ +LI+  G+
Sbjct: 278 RGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGK 337

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            GF+ +   +F+ +   +++P +  +++ + AY++  ++      +  M+ AG  PD   
Sbjct: 338 AGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLA 397

Query: 217 AKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIY 251
             V++      +  E+   L + M    +K  L +Y
Sbjct: 398 YSVMLDVFFKAEMPEKCIILYKAMVGSGLKPELSVY 433



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 91/185 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++ +++   G+ P   ++  L++A S    ++    +  +M + G  PD +  N+M++
Sbjct: 169 ASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMIS 228

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR G+ E    +   M++  +  D  TYN +++ + R G IE++E +   +   R   
Sbjct: 229 VYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSS 288

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y +  ++R+  E++ +M + G  PD  T  VLI        + +   + 
Sbjct: 289 DEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMF 348

Query: 238 RTMHK 242
             M K
Sbjct: 349 EDMLK 353



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 35/223 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF +++R G      ++  LL+AY++TGN  +    ++ M  +GL+P+    N 
Sbjct: 651 WQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANY 710

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +GR G+ +++ E    + +     +  T+ ++ + + R G +E+   +++ +    
Sbjct: 711 VLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAG 770

Query: 175 LKPDVVTWTSRLAAYSRKKL-----------------------------------YRRCL 199
             P +  + + LA YSR+ +                                   YR+  
Sbjct: 771 FSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAA 830

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +F+ M + GC PD  T   LI   S    +++   L+R M K
Sbjct: 831 LVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIK 873



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 5/175 (2%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +++  + S+Y     +  A  VF+ M+ +G +P   +   L+  YS+   V + + ++ +
Sbjct: 811 DIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLRE 870

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M K+G  P+     ++++ YGRL  +E  E V  ++ +     D + YN++IN+Y + G 
Sbjct: 871 MIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGE 930

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
             K+E + + + A   +P + T    + +Y +     +  E+ E + + G  PD 
Sbjct: 931 HRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDA 985



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 1/144 (0%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM-EGLFQS 169
           V NS++++Y R G +  ++++L  M+      D+ T+NI+I    RGG  E +   L Q 
Sbjct: 116 VYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQD 175

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           + A  L+PD +T+ + ++A S        + IFEEM   GC PD  T   +IS      +
Sbjct: 176 VYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGR 235

Query: 230 IEQVTTLVRTMHKDMKTALPIYFN 253
           +E  +++ R M +   T   + +N
Sbjct: 236 VEAASSIFRIMQEQGFTPDAVTYN 259



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 5/193 (2%)

Query: 77  HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
           H+ ++ +Y K       E V   + + G   +T   +++L+ Y   G FE+    L  M 
Sbjct: 638 HVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMV 697

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
                 + +  N ++  +GR G  +++   +Q LP   + P+  T+     A+SR     
Sbjct: 698 AAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLE 757

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA-LPIYFNLY 255
               ++ +M +AG  P     K L++  S     E V      + KD+K A L +  ++Y
Sbjct: 758 EARSMYRQMREAGFSPSIQVFKALLALYSR----ETVEIDAEELVKDIKKAGLELDMDIY 813

Query: 256 GEKGVARSNLGQY 268
                  S LG Y
Sbjct: 814 NHMISLYSKLGSY 826



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 63/117 (53%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++A A+FE+M +  + PT+++   ++ AY+K    +  E   + M ++G++PD    +
Sbjct: 340 FVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYS 399

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
            ML+++ +    EK   +  AM       ++S Y I++ ++ +   + ++E L + +
Sbjct: 400 VMLDVFFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSLAEIENLSKEM 456



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/157 (16%), Positives = 68/157 (43%)

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
           Y K G   K E +  QM + G  PD+     +++  G+ G   +   +   M K      
Sbjct: 300 YGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPT 359

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +  ++ +I  Y +       E  +  +    ++PD++ ++  L  + + ++  +C+ +++
Sbjct: 360 LQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYK 419

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            M+ +G  P+     +++     +  + ++  L + M
Sbjct: 420 AMVGSGLKPELSVYAIMVRVFYQKSSLAEIENLSKEM 456



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/149 (19%), Positives = 67/149 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ +MK  G  P   +  +L+    K G V +   +   M KS ++P     ++M+ 
Sbjct: 309 AEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMIC 368

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +   F   E   + M +     D+  Y+++++++ +    EK   L++++    LKP
Sbjct: 369 AYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGSGLKP 428

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           ++  +   +  + +K        + +EM+
Sbjct: 429 ELSVYAIMVRVFYQKSSLAEIENLSKEMV 457



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 65/169 (38%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS+A       +  G         +L+ +Y + G   +       M   GL+ D  V+ +
Sbjct: 546 FSEAEEEMRTSQTYGQAQVSDFLKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQT 605

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +  Y R G      E+L          D + +  +I  YG+    +  E +F+ L    
Sbjct: 606 AVMCYCRKGFAFVAHELLIDCLHAFEVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHG 665

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              +   +++ L+AY+    + R     + M+ AG  P+   A  ++ A
Sbjct: 666 FAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEA 714


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 87/162 (53%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F +M+  GI P + ++  LL+A S  G V +   V   M+++G+ PD+   N+++++Y
Sbjct: 166 GLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIY 225

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+  + E + E+L  ME+   A D+  YNILI  YGR G       +F+ +      PDV
Sbjct: 226 GQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDV 285

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           VT+++ L AY +   Y     +F +M + G  PD  T   LI
Sbjct: 286 VTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLI 327



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 35/198 (17%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EM++ G  P + ++ +L+ AY + G       +  QM ++G  PD    +++L  YG
Sbjct: 237 LLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYG 296

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G ++++  + T M++     D++TYN LI ++G+GGF ++   LF  L    ++PD+ 
Sbjct: 297 KHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMS 356

Query: 181 TW-----------------------------------TSRLAAYSRKKLYRRCLEIFEEM 205
           T+                                   T  + AY    LY      F  M
Sbjct: 357 TYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSM 416

Query: 206 IDAGCYPDGGTAKVLISA 223
            ++GC PD  T   LI A
Sbjct: 417 KESGCKPDLETYNALIGA 434



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 9/188 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN---QMHKSGLKPDTFVINSMLN 117
           +   MKR  +TP + ++  ++ A +K G   + EG++    QM   G++PD    N++L+
Sbjct: 131 LLARMKREKVTPNLITYNTVINACAKGG--LEWEGLLGLFAQMRHEGIQPDIITYNTLLS 188

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G  E+   V   M +     D  TYN L++IYG+    E +  L + +      P
Sbjct: 189 ACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAP 248

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV +   + AY R   YR   ++F++M +AGC PD  T   L+ A       ++    V
Sbjct: 249 DVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDE----V 304

Query: 238 RTMHKDMK 245
           R +  DMK
Sbjct: 305 RLLFTDMK 312



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 6/171 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV---INQMHKSGLKPDTFVIN 113
           +A  VF  M   G+ P   ++  L+  Y   G   + EGV   + +M ++G  PD    N
Sbjct: 198 EAGMVFRTMNEAGVVPDSITYNALVDIY---GQADRHEGVGELLREMEQAGNAPDVVAYN 254

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  YGR G++    ++   M++     D+ T++ L+  YG+ G  +++  LF  +  +
Sbjct: 255 ILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKER 314

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
             +PDV T+ + +  + +   ++  + +F +++D G  PD  T   L+ +C
Sbjct: 315 GTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSC 365



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 107/232 (46%), Gaps = 11/232 (4%)

Query: 43  TPNLFVFIFSIY-----FSDAHAVFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           T N F  IF  +     +  A  +F+ M+R     P    + +++    + G + K   +
Sbjct: 37  TINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASEL 96

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M  + ++ + +   +++N YGR GQ E    +L  M++     ++ TYN +IN   +
Sbjct: 97  FEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAK 156

Query: 157 GGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           GG   E + GLF  +  + ++PD++T+ + L+A S + L      +F  M +AG  PD  
Sbjct: 157 GGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSI 216

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEKGVARS 263
           T   L+      D+ E V  L+R M +       + +N+    YG  G  R+
Sbjct: 217 TYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRA 268



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 5/200 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +   M +  +TPT      L+TAY      ++     N M +SG KPD    N+++ 
Sbjct: 374 AKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIG 433

Query: 118 LYGRLGQF-EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +   G + E     LT +++G  +AD+STYN LI  +GRGG  +      + +   R  
Sbjct: 434 AHAGGGLYCEAGSAYLTMIDEG-ISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCS 492

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+ + +  Y    L+      F ++   G  P   +  +L+S C+  ++ +  + +
Sbjct: 493 PNRHTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLLSVCARRNRWDDASKV 552

Query: 237 VRTMHKDMKTALPIYFNLYG 256
           +  M   ++  +P  + + G
Sbjct: 553 LEEM---LEPNMPSIYGVVG 569



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 2/182 (1%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +T N  + +F    +F ++  +F ++   G+ P M ++  LL +  K G     + +   
Sbjct: 321 NTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRH 380

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +S + P T     ++  YG    + +      +M++     D+ TYN LI  +  GG 
Sbjct: 381 MLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGL 440

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             +    + ++  + +  DV T+ S + A+ R  L+   +E   +M +A C P+  T + 
Sbjct: 441 YCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEA 500

Query: 220 LI 221
           L+
Sbjct: 501 LM 502



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S+A   F  MK  G  P ++++  L+ A++  G   +       M   G+  D    NS
Sbjct: 406 YSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNS 465

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  +GR G F+   E    ME+   + +  TY  L+ +Y   G  ++ +  F  L    
Sbjct: 466 LIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAKAQFLDLQVGG 525

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
             P V ++   L+  +R+  +    ++ EEM++
Sbjct: 526 ELPSVDSYCLLLSVCARRNRWDDASKVLEEMLE 558



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 79/207 (38%), Gaps = 7/207 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP++  F  +   Y     + +   +F +MK  G  P + ++  L+  + + G   +   
Sbjct: 282 TPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESIN 341

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   +   G++PD      +L   G+ G  +  +++   M +         +  LI  YG
Sbjct: 342 LFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYG 401

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
                 +    F S+     KPD+ T+ + + A++   LY      +  MID G   D  
Sbjct: 402 NAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVS 461

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T   LI A       +      R M +
Sbjct: 462 TYNSLIEAFGRGGLFDDAIEFSRDMEE 488


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM R  I P + ++  ++  Y+K G + +   + N+M  + +  D    N++L+
Sbjct: 231 AFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLS 290

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y +LG+FE+   V   ME      D  TYN L+  YG+ G  E+++ +F+ + A+R+ P
Sbjct: 291 IYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFP 350

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+++ +  YS+  LY+  +E+F E   AG   D      LI A      +E   + +
Sbjct: 351 NLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFL 410

Query: 238 RTMHKDMKTALPIYFN----LYGEKGVARSNLGQYIGN 271
             M K+      + +N     +G  G+        +G+
Sbjct: 411 DEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGD 448



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 1/204 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EMK   I     S+  LL+ Y+K G   +   V  +M  SG+K D    N+
Sbjct: 263 LDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNA 322

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  YG+ G++E+++ V   M+      ++ TY+ LI++Y +GG  ++   +F+      
Sbjct: 323 LLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAG 382

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LK DVV +++ + A  +  L    +   +EM   G  P+  T   +I A      +E  T
Sbjct: 383 LKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDAT 442

Query: 235 TLVRTMHKDMKTALPIYFNLYGEK 258
                  K+    + I+  L  EK
Sbjct: 443 E-SEVGDKEDNQIIKIFGQLAAEK 465



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 86/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +F EM   GI   + ++  LL A  K G +     ++++M +  + P+    ++++
Sbjct: 195 DEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVI 254

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y + G+ ++   +   M+  S   D  +YN L++IY + G  E+   + + + +  +K
Sbjct: 255 DGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIK 314

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D VT+ + L  Y ++  Y     +FEEM     +P+  T   LI   S     ++   +
Sbjct: 315 KDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEV 374

Query: 237 VRTMHK 242
            R   K
Sbjct: 375 FREFKK 380



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 5/156 (3%)

Query: 50  IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + SIY     F +A  V +EM+  GI     ++  LL  Y K G   + + V  +M    
Sbjct: 288 LLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAER 347

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           + P+    ++++++Y + G +++  EV    +K    AD+  Y+ LI+   + G +E   
Sbjct: 348 IFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAV 407

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
                +  + ++P+VVT+ S + A+ R  +     E
Sbjct: 408 SFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATE 443



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 103 SGLKPDTFVINSMLNLYGRLG-QFEKMEEVLTAMEKGS------YAADISTYNILINIYG 155
           SGLKP+    N++++  G+ G  F +  E+   M   S         DI TYN L++   
Sbjct: 164 SGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVC 223

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +GG ++    +   +P K + P+VVT+++ +  Y++       L +F EM  A    D  
Sbjct: 224 KGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRV 283

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEKG 259
           +   L+S  +   + E+   + + M         + +N     YG++G
Sbjct: 284 SYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQG 331



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 17/177 (9%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL  +  +  +Y     + +A  VF E K+ G+   +  +  L+ A  K G V      
Sbjct: 350 PNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSF 409

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--------GSYAADISTYN 148
           +++M K G++P+    NS+++ +GR G  E   E     ++        G  AA+ + + 
Sbjct: 410 LDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQLAAEKTCHA 469

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              N  GR   +  +  +F  +    +KP+VVT+++ L A SR   +     + EE+
Sbjct: 470 KKEN-RGRQEILCIL-AVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEEL 524


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 97/188 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V +EM + G+ P   ++ LL+ AY++ G       ++ +M   G+KP ++V + 
Sbjct: 315 LKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 374

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G ++K   VL  M+      D   YN++I+ +G+   +      F  +  + 
Sbjct: 375 ILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEE 434

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDVVTW + + A+ +   + R +E+FEEM ++ C P   T  ++I+    +++ E V 
Sbjct: 435 IEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVE 494

Query: 235 TLVRTMHK 242
            ++  M +
Sbjct: 495 AMLSEMKE 502



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 82/164 (50%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+  EMK  G+ P + ++  L+  Y ++G   +    I  M   GLKP   + ++++N Y
Sbjct: 495 AMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAY 554

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G  +    V+ AM+       I   N LIN +G    + +   + Q +    L+PDV
Sbjct: 555 AQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDV 614

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +T+T+ + A  R + + +   I+EEMI +GC PD     +L SA
Sbjct: 615 ITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSA 658



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 1/156 (0%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFE 126
           +G+TP   +   L++A    G VA+ E +  +   +G +KP T   N++L  Y R+G  +
Sbjct: 257 IGLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLK 316

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             E+VL  M +   A D +TY++L++ Y R G  E    L + + A  +KP    ++  L
Sbjct: 317 NAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 376

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           A +  +  +++   +  EM  +G  PD     V+I 
Sbjct: 377 AGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMID 412



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 88/189 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AV  EM+  G+ P    + +++  + K   +       ++M +  ++PD    N+
Sbjct: 385 WQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNT 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ ++  E+   M + +     +TYNI+IN+ G     E +E +   +  + 
Sbjct: 445 LIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQG 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+++T+T+ +  Y R   Y+  ++  E M   G  P       L++A +     +   
Sbjct: 505 LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 564

Query: 235 TLVRTMHKD 243
            +V+ M  D
Sbjct: 565 NVVKAMKAD 573


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 95/182 (52%), Gaps = 1/182 (0%)

Query: 60  AVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           A+ E M K  GI P++ ++  ++  Y+K G   +   +  +M    ++PD    N+M+++
Sbjct: 281 ALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDI 340

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           + RLG F++   +  AME+  +A DI TYN L++ YG+ G   +   L + +  +   P+
Sbjct: 341 HARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPN 400

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           ++T+++ + AY +   +R  + +F+++  AG  PD      L+  C      ++   L+ 
Sbjct: 401 ILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLE 460

Query: 239 TM 240
            M
Sbjct: 461 EM 462



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 84/167 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+F+EM+   + P    +  ++  +++ GN  +   +   M ++G   D    N++L
Sbjct: 314 EAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALL 373

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YG+ G+F +   +L  M++   + +I TY+ LI+ Y + GF      LFQ +    L+
Sbjct: 374 DSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQ 433

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PDVV +++ +    +       L + EEM D G  P+  T   L+ A
Sbjct: 434 PDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDA 480



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 105/217 (48%), Gaps = 8/217 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A  +FE MK +   P +  +  ++ A SK G+      +  +M + G+ PD    N+
Sbjct: 172 LAKAVEIFEAMKVV-CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNT 230

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP-AK 173
           +++  GR  ++E+ + +   ME+   A D  TYN LI  Y RGG +     L +++  + 
Sbjct: 231 LISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSS 290

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++P V+T+++ +  Y++  L    + +F+EM +    PDG     ++   +     ++ 
Sbjct: 291 GIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEA 350

Query: 234 TTLVRTMH-----KDMKTALPIYFNLYGEKGVARSNL 265
            ++ R M      KD+ T   +  + YG++G  R  +
Sbjct: 351 HSIRRAMEEAGFAKDIVTYNAL-LDSYGKQGKFREAM 386



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 16/197 (8%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A ++ EEMK+ G +P + ++  L+ AY K G       +   + K+GL+PD  + ++
Sbjct: 382 FREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYST 441

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G  ++   +L  M       ++ TYN L++ YGR   + +     ++ P  R
Sbjct: 442 LVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVR-----KNFPKLR 496

Query: 175 ----------LKPDV-VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
                     LKP V     S +    ++ L      +F EM   G  P+  T   +++A
Sbjct: 497 FFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNA 556

Query: 224 CSSEDQIEQVTTLVRTM 240
           CS    +E  ++L+  M
Sbjct: 557 CSHCASVEDASSLLEAM 573



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 8/207 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL V+   I        +  A  +F EM   G++P   +   L++A  +     +C+ +
Sbjct: 188 PNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRI 247

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYG 155
             +M + G+  D    N+++  Y R GQ      ++  M K S     + TY+ +I+ Y 
Sbjct: 248 FAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYA 307

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G   +   LFQ +  + ++PD + + + +  ++R   +     I   M +AG   D  
Sbjct: 308 KLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIV 367

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T   L+ +   + +  +  +L+  M +
Sbjct: 368 TYNALLDSYGKQGKFREAMSLLEEMKQ 394



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 16/155 (10%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           V +++++  GRLG+ +  + +        +  ++  Y+ LI  YGR G + K   +F+++
Sbjct: 123 VTSTIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAM 182

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
                KP++V + + + A S+   Y   L IF EM++ G  PD  T   LISA    ++ 
Sbjct: 183 KVV-CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRW 241

Query: 231 EQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
           E+   +   M                E+G+AR ++
Sbjct: 242 EECDRIFAEME---------------ERGIARDDV 261



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN+  +   I       +  DA A+F+++K+ G+ P +  +  L+    K G+  +   
Sbjct: 398 SPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALA 457

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGR-----LGQFEKMEEVL----TAMEKGSYAADIST 146
           ++ +M  +G++P+    NS+L+ YGR        F K+   L    T + K S   D  +
Sbjct: 458 LLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQS 517

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
              L++   +   +     +F+ +    +KP+VVT++S L A S
Sbjct: 518 ---LVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACS 558


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 95/182 (52%), Gaps = 1/182 (0%)

Query: 60  AVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           A+ E M K  GI P++ ++  ++  Y+K G   +   +  +M    ++PD    N+M+++
Sbjct: 280 ALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDI 339

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           + RLG F++   +  AME+  +A DI TYN L++ YG+ G   +   L + +  +   P+
Sbjct: 340 HARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPN 399

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           ++T+++ + AY +   +R  + +F+++  AG  PD      L+  C      ++   L+ 
Sbjct: 400 ILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLE 459

Query: 239 TM 240
            M
Sbjct: 460 EM 461



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 84/167 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+F+EM+   + P    +  ++  +++ GN  +   +   M ++G   D    N++L
Sbjct: 313 EAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALL 372

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YG+ G+F +   +L  M++   + +I TY+ LI+ Y + GF      LFQ +    L+
Sbjct: 373 DSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQ 432

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PDVV +++ +    +       L + EEM D G  P+  T   L+ A
Sbjct: 433 PDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDA 479



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 105/217 (48%), Gaps = 8/217 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A  +FE MK +   P +  +  ++ A SK G+      +  +M + G+ PD    N+
Sbjct: 171 LAKAVEIFEAMKVV-CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNT 229

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP-AK 173
           +++  GR  ++E+ + +   ME+   A D  TYN LI  Y RGG +     L +++  + 
Sbjct: 230 LISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSS 289

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++P V+T+++ +  Y++  L    + +F+EM +    PDG     ++   +     ++ 
Sbjct: 290 GIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEA 349

Query: 234 TTLVRTMH-----KDMKTALPIYFNLYGEKGVARSNL 265
            ++ R M      KD+ T   +  + YG++G  R  +
Sbjct: 350 HSIRRAMEEAGFAKDIVTYNAL-LDSYGKQGKFREAM 385



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 16/197 (8%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A ++ EEMK+ G +P + ++  L+ AY K G       +   + K+GL+PD  + ++
Sbjct: 381 FREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYST 440

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G  ++   +L  M       ++ TYN L++ YGR   + +     ++ P  R
Sbjct: 441 LVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVR-----KTFPKLR 495

Query: 175 ----------LKPDVVTWTSRLAAYSRKK-LYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
                     LKP +      L    +K+ L      +F EM   G  P+  T   +++A
Sbjct: 496 FFLLPRVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNA 555

Query: 224 CSSEDQIEQVTTLVRTM 240
           CS    +E  + L+  M
Sbjct: 556 CSHCASVEDASNLLEAM 572



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 8/207 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL V+   I        +  A  +F EM   G++P   +   L++A  +     +C+ +
Sbjct: 187 PNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRI 246

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYG 155
             +M + G+  D    N+++  Y R GQ      ++  M K S     + TY+ +I+ Y 
Sbjct: 247 FAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYA 306

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G   +   LFQ +  + ++PD + + + +  ++R   +     I   M +AG   D  
Sbjct: 307 KLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIV 366

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T   L+ +   + +  +  +L+  M +
Sbjct: 367 TYNALLDSYGKQGKFREAMSLLEEMKQ 393



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 16/155 (10%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           V +++++  GRLG+ +  + +        +  ++  Y+ LI  YGR G + K   +F+++
Sbjct: 122 VTSTIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAM 181

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
                KP++V + + + A S+   Y   L IF EM++ G  PD  T   LISA    ++ 
Sbjct: 182 KVV-CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRW 240

Query: 231 EQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
           E+   +   M                E+G+AR ++
Sbjct: 241 EECDRIFAEME---------------ERGIARDDV 260



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN+  +   I       +  DA A+F+++K+ G+ P +  +  L+    K G+  +   
Sbjct: 397 SPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALA 456

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGR-----LGQFEKMEEVL----TAMEKGSYAADIST 146
           ++ +M  +G++P+    NS+L+ YGR        F K+   L    T + K S   D  +
Sbjct: 457 LLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQQS 516

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
              L++   +   +     +F+ +    +KP+VVT++S L A S
Sbjct: 517 ---LVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACS 557


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 30  SHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           +H +L+  L+L ++ +  +        +    F E++R GI+P + +   +L+ Y +   
Sbjct: 577 THAVLLKTLVLVNSKSDLLI-------ETERAFLELRRRGISPDITTLNAMLSIYGRKQM 629

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           VAK   ++N MH++   P     NS++ +Y R   F+K EE+L  + +     D  +YN 
Sbjct: 630 VAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNT 689

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +I  Y R G +++   +F  +    L PDVVT+ + +A Y+   ++   +++   MI  G
Sbjct: 690 VIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQG 749

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           C PD  T   ++      DQ  +  + V+ +
Sbjct: 750 CKPDQNTYNSIVDWYCKLDQRHEANSFVKNL 780



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 97/195 (49%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  S    +A  V +EM+  G +PT  ++  L++AY+K G + +   +  QM   G+
Sbjct: 306 LDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGI 365

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KPD F   ++L+ + + G+ +   +V   M       +I T+N LI ++G  G   +M  
Sbjct: 366 KPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMK 425

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +F  +      PD+VTW + LA + +  +  +   IF+EM  AG   +  T   LISA S
Sbjct: 426 VFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYS 485

Query: 226 SEDQIEQVTTLVRTM 240
                +Q   + ++M
Sbjct: 486 RCGSFDQAMAVYKSM 500



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 58  AHAVFEEMKRLGI------TPTMKSHMLLLTAY----SKTGNVAKCEGVINQMHKSGLKP 107
           A+A  +E++R+        + ++++H +LL       SK+  + + E    ++ + G+ P
Sbjct: 553 AYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISP 612

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D   +N+ML++YGR     K  E+L  M +  +   ++TYN L+ +Y R    +K E + 
Sbjct: 613 DITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEIL 672

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +  K +KPD +++ + + AY R    +    IF EM D+   PD  T    I+  +++
Sbjct: 673 REVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAAD 732

Query: 228 DQIEQVTTLVRTMHK 242
               +   +VR M K
Sbjct: 733 SMFAEAIDVVRYMIK 747



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 86/167 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S+  A+ E M+  G+ P + ++  L++   +     +   +  QM   G  PD    N+
Sbjct: 245 WSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNA 304

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+++G+  + ++  +VL  ME   ++    TYN LI+ Y +GG +E+   L   +  K 
Sbjct: 305 LLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKG 364

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +KPDV T+T+ L+ + +       +++F EM   GC P+  T   LI
Sbjct: 365 IKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALI 411



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 2/188 (1%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEK 127
           G+   + ++  L+ AYS +G       + N+M + G  P     N +LN+YG++G  +  
Sbjct: 188 GVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSN 247

Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
           +  ++ AM     A D+ TYN LI+   RG   E+   LFQ +  +   PD VT+ + L 
Sbjct: 248 VTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLD 307

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKT 246
            + + +  +  +++ +EM   G  P   T   LISA +    +E+   L   M HK +K 
Sbjct: 308 VFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKP 367

Query: 247 ALPIYFNL 254
            +  Y  L
Sbjct: 368 DVFTYTTL 375



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 91/181 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EM+ +G  P + +   L+  +   G  A+   V + +      PD    N++L ++G
Sbjct: 391 VFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFG 450

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G   ++  +   M++  + A+  T+N LI+ Y R G  ++   +++S+    + PD+ 
Sbjct: 451 QNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLS 510

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + LAA +R  L+ +  ++  EM D  C P+  +   L+ A ++  +IE++      +
Sbjct: 511 TYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEI 570

Query: 241 H 241
           +
Sbjct: 571 Y 571



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 92/178 (51%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +M   GI P + ++  LL+ + K G       V  +M   G KP+    N+++ ++G  G
Sbjct: 359 QMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRG 418

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           +F +M +V   ++  + + DI T+N L+ ++G+ G   ++ G+F+ +       +  T+ 
Sbjct: 419 KFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFN 478

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + ++AYSR   + + + +++ M++AG  PD  T   +++A +     EQ   ++  M 
Sbjct: 479 TLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEME 536



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 4/208 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++   VF+++K    +P + +   LL  + + G  ++  G+  +M ++G   +    N+
Sbjct: 420 FAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNT 479

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++   V  +M +     D+STYN ++    RGG  E+ E +   +   R
Sbjct: 480 LISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGR 539

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED-QIEQV 233
            KP+ ++++S L AY+  K   R     EE+            K L+   S  D  IE  
Sbjct: 540 CKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETE 599

Query: 234 TTLVRTMHKDMK---TALPIYFNLYGEK 258
              +    + +    T L    ++YG K
Sbjct: 600 RAFLELRRRGISPDITTLNAMLSIYGRK 627



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 1/170 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           + DA  +F +M++ G  PT+ ++ ++L  Y K G   +    ++  M   G+ PD +  N
Sbjct: 209 YRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYN 268

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   R   +E+   +   M+   +  D  TYN L++++G+    ++   + Q + A 
Sbjct: 269 TLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEAN 328

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              P  VT+ S ++AY++  L    L++  +M+  G  PD  T   L+S 
Sbjct: 329 GFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSG 378



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 86/187 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S    +F+EMKR G      +   L++AYS+ G+  +   V   M ++G+ PD    N++
Sbjct: 456 SQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAV 515

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L    R G +E+ E+VL  ME G    +  +Y+ L++ Y  G  IE+M    + + +  +
Sbjct: 516 LAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSV 575

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +   V   + +   S+  L       F E+   G  PD  T   ++S    +  + +   
Sbjct: 576 ETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHE 635

Query: 236 LVRTMHK 242
           ++  MH+
Sbjct: 636 ILNFMHE 642



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 100/250 (40%), Gaps = 35/250 (14%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A AV++ M   G+ P + ++  +L A ++ G   + E V+ +M     KP+    +S
Sbjct: 490 FDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSS 549

Query: 115 MLNLYGRLGQFEKM-----------------------------------EEVLTAMEKGS 139
           +L+ Y    + E+M                                   E     + +  
Sbjct: 550 LLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRG 609

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + DI+T N +++IYGR   + K   +   +   R  P + T+ S +  YSR + +++  
Sbjct: 610 ISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSE 669

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKG 259
           EI  E+++ G  PD  +   +I A     ++++ + +   M         + +N +    
Sbjct: 670 EILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATY 729

Query: 260 VARSNLGQYI 269
            A S   + I
Sbjct: 730 AADSMFAEAI 739



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/176 (18%), Positives = 81/176 (46%), Gaps = 1/176 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++    K G V+    ++  +   G+  D +    ++N Y   G++     +   M++ 
Sbjct: 163 VIIKILGKAGRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQD 222

Query: 139 SYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                + TYN+++N+YG+ G     +  L +++ ++ + PD+ T+ + ++   R  LY  
Sbjct: 223 GCNPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEE 282

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            + +F++M   G  PD  T   L+       + ++   +++ M  +  +   + +N
Sbjct: 283 AVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYN 338


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 105/209 (50%), Gaps = 8/209 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V  EM+R G+ P  +++ LL+ AY           V+ +M  S ++P+ +V + +L
Sbjct: 359 DAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRIL 418

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y   G+++K  +VL  ME      D   YN+LI+ +G+   ++     F  + ++ ++
Sbjct: 419 ASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIE 478

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD +TW + +  + +   + R  E+FEEM++ G  P   T  ++I++   +++ + V  L
Sbjct: 479 PDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNL 538

Query: 237 VRTMHKDMKTALP------IYFNLYGEKG 259
           +  M    +  LP         ++YG+ G
Sbjct: 539 LTNMRS--QGLLPNAVTYTTLIDIYGKSG 565



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D   +   M+  G+ P   ++  L+  Y K+G        ++ M  +GLKP + + N+
Sbjct: 532 WDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNA 591

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN Y + G  ++      AM        +   N LIN +G+     +   + Q +    
Sbjct: 592 LLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKEND 651

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LKPDVVT+T+ + A    + + +   ++EEMI +GC PD     +L SA
Sbjct: 652 LKPDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTPDRKARAMLRSA 700



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 109/234 (46%), Gaps = 8/234 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN +VF  I + Y     +     V  EM+  G+ P    + +L+  + K   +      
Sbjct: 409 PNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMAT 468

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M   G++PDT   N++++ + + G+ ++ EE+   M +  Y    +T+NI+IN +G 
Sbjct: 469 FDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGD 528

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               + ++ L  ++ ++ L P+ VT+T+ +  Y +   +   +E  ++M  AG  P    
Sbjct: 529 QERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTM 588

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD-MKTALPIYFNLYGEKGVARSNLGQYI 269
              L++A +     +Q  +    M  D +K +L    +L    G  R ++  ++
Sbjct: 589 YNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFV 642



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 1/198 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A F+ M   GI P   +   L+  + K G   + E +  +M + G  P     N M+N
Sbjct: 465 AMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMIN 524

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +G   +++ ++ +LT M       +  TY  LI+IYG+ G  +        + A  LKP
Sbjct: 525 SFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKP 584

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ-IEQVTTL 236
               + + L AY+++ L  + +  F  M D G  P       LI+A   + + +E    L
Sbjct: 585 SSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVL 644

Query: 237 VRTMHKDMKTALPIYFNL 254
                 D+K  +  Y  L
Sbjct: 645 QYMKENDLKPDVVTYTTL 662



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 67/135 (49%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G   + E +  +M  +GL+P T   N++L  Y + G     E V++ ME+     +  TY
Sbjct: 320 GRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTY 379

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           ++LI+ YG     E    + + + A  ++P+   ++  LA+Y  K  +++  ++  EM D
Sbjct: 380 SLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMED 439

Query: 208 AGCYPDGGTAKVLIS 222
           +G  PD     VLI 
Sbjct: 440 SGVRPDRIFYNVLID 454


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 112/228 (49%), Gaps = 11/228 (4%)

Query: 43  TPN--LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN   FV IF  +       +A +++ +MK  G +P+++    LL  YS+       E 
Sbjct: 748 SPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEE 807

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++  + K+GL+ D  + N M++LY +LG +     V   M++   + D +T+N LI +Y 
Sbjct: 808 LVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYS 867

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R   +++ + L + +      P++ T+T+ ++AY R + Y     +F+ + + GC PD  
Sbjct: 868 RNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDAT 927

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKD----MKTALPIYFNLYGEKG 259
              V+I+      +  ++  ++  M  D      T + +  + YG+ G
Sbjct: 928 AYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGG 975



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 84/174 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA  +FEEM+R G  P + ++  +++ Y + G V     +   M + G  PD    NS
Sbjct: 212 LSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNS 271

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ + R G+ E++E +   M     ++D  TYN +I++YG+ G   K E L+  +  + 
Sbjct: 272 VLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEG 331

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
             PD VT+T  +    +         +FE+M+ +   P       +I A +  D
Sbjct: 332 RCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKAD 385



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 7/207 (3%)

Query: 36   NFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            N L++ ++ N  V        +A A+  EM + G  P + ++  L++AY +       E 
Sbjct: 860  NTLIMLYSRNQMV-------QEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAEL 912

Query: 96   VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            V   + ++G KPD    N M+N+Y + G+  K+EE++  M+   +   ++T ++L++ YG
Sbjct: 913  VFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYG 972

Query: 156  RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
            +GG   K E + ++LP   + PD + +TS + ++   K Y   +    +M DA   P   
Sbjct: 973  KGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHV 1032

Query: 216  TAKVLISACSSEDQIEQVTTLVRTMHK 242
            T    + A S  ++      L++ + +
Sbjct: 1033 TITCFVGAASVCERSSHALMLLKALSE 1059



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 4/205 (1%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F+ +  +GI+P  ++ +++  A+S+ GN+ +   +  QM ++G  P   V  ++L LY R
Sbjct: 739 FQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSR 798

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
                  EE++  ++K     DI  YN +I++Y + G       +F+ +      PD  T
Sbjct: 799 ETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATT 858

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLV 237
           + + +  YSR ++ +    +  EMI  G  P+  T   LISA       ED      ++ 
Sbjct: 859 FNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIA 918

Query: 238 RTMHKDMKTALPIYFNLYGEKGVAR 262
            T  K   TA  +  N+Y + G  R
Sbjct: 919 ETGCKPDATAYNVMINVYRKAGEHR 943



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 91/185 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++ +++   G+ P   ++  L++A S    ++    +  +M + G  PD +  N+M++
Sbjct: 180 ASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMIS 239

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR G+ E    +   M++  +  D  TYN +++ + R G IE++E +   +   R   
Sbjct: 240 VYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSS 299

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y +  ++R+  E++ +M + G  PD  T  VLI        + +   + 
Sbjct: 300 DEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMF 359

Query: 238 RTMHK 242
             M K
Sbjct: 360 EDMLK 364



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 90/177 (50%), Gaps = 7/177 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+++ +  + S+Y        A ++F  M+  G TP   ++  +L A+++ G + + E +
Sbjct: 229 PDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERI 288

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M  +    D    N+M+++YG+ G   K EE+   M++     D  T+ +LI+  G+
Sbjct: 289 RGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGK 348

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            GF+ +   +F+ +   +++P +  +++ + AY++  ++      +  M+ AG  PD
Sbjct: 349 AGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPD 405



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 35/223 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF ++++ G      ++  LL+AY++TGN  +    ++ M  +GL+P+    N 
Sbjct: 662 WQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANY 721

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +GR G+ +++ E    + +   + +  T+ ++ + + R G +E+   +++ +    
Sbjct: 722 VLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAG 781

Query: 175 LKPDVVTWTSRLAAYSRKKL-----------------------------------YRRCL 199
             P +  + + LA YSR+ +                                   YR   
Sbjct: 782 FSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAA 841

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +F+ M + GC PD  T   LI   S    +++   L+R M K
Sbjct: 842 LVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIK 884



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 87/175 (49%), Gaps = 5/175 (2%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +++  + S+Y     + +A  VF+ M+ +G +P   +   L+  YS+   V + + ++ +
Sbjct: 822 DIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLRE 881

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M K+G  P+     ++++ YGRL  +E  E V  ++ +     D + YN++IN+Y + G 
Sbjct: 882 MIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGE 941

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
             K+E + + +     +P + T    + +Y +     +  E+ E + + G  PD 
Sbjct: 942 HRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDA 996



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 1/144 (0%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM-EGLFQS 169
           V NS++++Y R G +  ++++L  M+      D+ T+NI+I    RGG  E +   L Q 
Sbjct: 127 VYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQD 186

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           + A  L+PD +T+ + ++A S        + IFEEM   GC PD  T   +IS      +
Sbjct: 187 VYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGR 246

Query: 230 IEQVTTLVRTMHKDMKTALPIYFN 253
           +E  +++ R M +   T   + +N
Sbjct: 247 VEAASSIFRIMQEQGFTPDAVTYN 270



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 5/193 (2%)

Query: 77  HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
           H+ ++ +Y K       E V   + + G   +T   +++L+ Y   G FE+    L  M 
Sbjct: 649 HVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMV 708

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
                 + +  N ++  +GR G  +++   FQ LP   + P+  T+     A+SR     
Sbjct: 709 AAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLE 768

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA-LPIYFNLY 255
               ++ +M +AG  P     K L++  S     E V      + KD+K A L +  ++Y
Sbjct: 769 EARSMYRQMKEAGFSPSIQVFKALLALYSR----ETVEIDAEELVKDIKKAGLELDIDIY 824

Query: 256 GEKGVARSNLGQY 268
                  S LG Y
Sbjct: 825 NHMISLYSKLGSY 837



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 63/117 (53%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++A A+FE+M +  + PT+++   ++ AY+K       E   + M ++G++PD    +
Sbjct: 351 FVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYS 410

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
            ML+++ + G  EK   +  AM       ++S Y I++ ++ +   + ++E L + +
Sbjct: 411 VMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSVAEIENLSKEM 467



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 68/149 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ +MK  G  P   +  +L+    K G V +   +   M KS ++P     ++M+ 
Sbjct: 320 AEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMIC 379

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +   F   E   + M +     D+  Y+++++++ + G  EK   L++++    LKP
Sbjct: 380 AYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSGLKP 439

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           ++  +   +  + +K        + +EM+
Sbjct: 440 ELSVYAIMVRVFYQKSSVAEIENLSKEMV 468



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/157 (16%), Positives = 67/157 (42%)

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
           Y K G   K E +  QM + G  PD+     +++  G+ G   +   +   M K      
Sbjct: 311 YGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPT 370

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +  ++ +I  Y +       E  +  +    ++PD++ ++  L  + +  +  +C+ +++
Sbjct: 371 LQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYK 430

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            M+ +G  P+     +++     +  + ++  L + M
Sbjct: 431 AMVGSGLKPELSVYAIMVRVFYQKSSVAEIENLSKEM 467



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/180 (18%), Positives = 70/180 (38%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS+A       +  G         +L+ +Y + G   +       M   GL+ D  V+ +
Sbjct: 557 FSEAEEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQT 616

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +  Y R G      E+L          D + +  +I  YG+    +  E +F+ L    
Sbjct: 617 AVMCYCRKGFAFVAHELLIDCLHAFDVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQQHG 676

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              +   +++ L+AY+    + R     + M+ AG  P+   A  ++ A     + ++++
Sbjct: 677 FAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEIS 736



 Score = 38.5 bits (88), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 33  MLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           M  + L  Q  P L  F   I        F+DA   +  M R G+ P + ++ ++L  + 
Sbjct: 358 MFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFF 417

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           K G   KC  +   M  SGLKP+  V   M+ ++ +     ++E +   M
Sbjct: 418 KAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSVAEIENLSKEM 467


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 97/186 (52%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM R  I P + ++  ++  Y+K G + +   + N+M  + +  D    N++L+
Sbjct: 345 AFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLS 404

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y +LG+FE+   V   ME      D  TYN L+  YG+ G  E+++ +F+ + A+R+ P
Sbjct: 405 IYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFP 464

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+++ +  YS+  LY+  +E+F E   AG   D      LI A      +E   + +
Sbjct: 465 NLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFL 524

Query: 238 RTMHKD 243
             M K+
Sbjct: 525 DEMTKE 530



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EMK   I     S+  LL+ Y+K G   +   V  +M  SG+K D    N+
Sbjct: 377 LDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNA 436

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  YG+ G++E+++ V   M+      ++ TY+ LI++Y +GG  ++   +F+      
Sbjct: 437 LLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAG 496

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LK DVV +++ + A  +  L    +   +EM   G  P+  T   +I A
Sbjct: 497 LKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDA 545



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 90/191 (47%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           + F+ A  +F+EM R G+ P   +   LL    + G       + ++M   G++ D F  
Sbjct: 270 VDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTY 329

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++L+   + GQ +   ++++ M +     ++ TY+ +I+ Y + G +++   LF  +  
Sbjct: 330 NTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKF 389

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             +  D V++ + L+ Y++   +   L + +EM  +G   D  T   L+     + + E+
Sbjct: 390 ASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEE 449

Query: 233 VTTLVRTMHKD 243
           V  +   M  +
Sbjct: 450 VKRVFEEMKAE 460



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 72/130 (55%), Gaps = 3/130 (2%)

Query: 113 NSMLNLYGRLGQFEKMEEVL-TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           ++M+++ GRLGQ E  + V  TA+ +G Y   +  ++ LI+ YGR G+ ++   +F+++ 
Sbjct: 189 SAMISILGRLGQVELAKNVFETALNEG-YGNTVYAFSALISAYGRSGYCDEAIKVFETMK 247

Query: 172 AKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           +  LKP++VT+ + + A  +  + + R  EIF+EM+  G  PD  T   L++ C      
Sbjct: 248 SSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLW 307

Query: 231 EQVTTLVRTM 240
           E    L   M
Sbjct: 308 EAARNLFSEM 317



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 86/185 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM   GI   + ++  LL A  K G +     ++++M +  + P+    +++++
Sbjct: 310 ARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVID 369

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+ ++   +   M+  S   D  +YN L++IY + G  E+   + + + +  +K 
Sbjct: 370 GYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKK 429

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+ + L  Y ++  Y     +FEEM     +P+  T   LI   S     ++   + 
Sbjct: 430 DAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVF 489

Query: 238 RTMHK 242
           R   K
Sbjct: 490 REFKK 494



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFE     G   T+ +   L++AY ++G   +   V   M  SGLKP+    N++++
Sbjct: 204 AKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVID 263

Query: 118 LYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             G+ G  F +  E+   M +     D  T+N L+ + GRGG  E    LF  +  + ++
Sbjct: 264 ACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIE 323

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+ T+ + L A  +        +I  EM      P+  T   +I   +   ++++   L
Sbjct: 324 QDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNL 383

Query: 237 VRTM 240
              M
Sbjct: 384 FNEM 387



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 50  IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + SIY     F +A  V +EM+  GI     ++  LL  Y K G   + + V  +M    
Sbjct: 402 LLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAER 461

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           + P+    ++++++Y + G +++  EV    +K    AD+  Y+ LI+   + G +E   
Sbjct: 462 IFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAV 521

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSR 191
                +  + ++P+VVT+ S + A+ R
Sbjct: 522 SFLDEMTKEGIRPNVVTYNSIIDAFGR 548



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 29/216 (13%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +   VFEEMK   I P + ++  L+  YSK G   +   V  +  K+GLK D  + ++
Sbjct: 447 YEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSA 506

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE------------K 162
           +++   + G  E     L  M K     ++ TYN +I+ +GR G  E            K
Sbjct: 507 LIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSK 566

Query: 163 M--------EGLFQSLPAKRLKPDVVTWTSRLAA----YSRKKLYRR-----CLEIFEEM 205
           M        E   +S    +    ++    +LAA    +++K+   R      L +F +M
Sbjct: 567 MSSSSLKVVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKM 626

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            +    P+  T   +++ACS  +  E  + L+  + 
Sbjct: 627 HELDIKPNVVTFSAILNACSRCNSFEDASMLLEELR 662



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 1/164 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++   + G V   + V       G     +  +++++ YGR G  ++  +V   M+   
Sbjct: 191 MISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSG 250

Query: 140 YAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
              ++ TYN +I+  G+GG    +   +F  +    ++PD +T+ S LA   R  L+   
Sbjct: 251 LKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAA 310

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             +F EM+  G   D  T   L+ A     Q++    ++  M +
Sbjct: 311 RNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPR 354



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 36/198 (18%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL  +  +  +Y     + +A  VF E K+ G+   +  +  L+ A  K G V      
Sbjct: 464 PNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSF 523

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFE------------KMEEVLTAMEKGSYAADI 144
           +++M K G++P+    NS+++ +GR G  E            KM      + + +  +++
Sbjct: 524 LDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKVVEDATESEV 583

Query: 145 STY--NILINIYG--------------RG-GFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
                N +I I+G              RG   I  +  +F  +    +KP+VVT+++ L 
Sbjct: 584 GDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILN 643

Query: 188 AYSRKKLYRRCLEIFEEM 205
           A SR   +     + EE+
Sbjct: 644 ACSRCNSFEDASMLLEEL 661


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 4/131 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLT-AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  VF+++   G+     ++  +L  AY++ G V + E +++ M + G KPDT + NS++
Sbjct: 519 AAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLI 578

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAA---DISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           N YG  G+ E ME +L  M K S      DI TYN LI +Y + GFI + E LFQ L   
Sbjct: 579 NAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARL 638

Query: 174 RLKPDVVTWTS 184
           +L PD  TWT+
Sbjct: 639 KLVPDATTWTA 649



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 4/168 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ MK+  +   + ++  LL A   +G +     V  Q+  +GLK +     +ML+
Sbjct: 484 AFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLD 543

Query: 118 -LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL---PAK 173
             Y R G+ E+ EE+++AME+     D   YN LIN YG  G  E ME L   +    +K
Sbjct: 544 GAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSK 603

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + KPD+ T+ + +  Y++     R  E+F+ +      PD  T   L+
Sbjct: 604 QTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALM 651



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%)

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
           L    + GN+AK   ++ +M K G+ P+  +   +++ Y R G F    +V   M     
Sbjct: 297 LKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGL 356

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             DI  YNIL++ + + G ++K  G+ +++ A RL P + T+TS L  Y +    ++ LE
Sbjct: 357 KPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALE 416

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +F+ +  AG  P   +   L+S  +   Q+E    ++  M
Sbjct: 417 VFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEM 456



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 86/183 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM + G++P    + +++  Y++ G+      V   M  +GLKPD  + N +++ + 
Sbjct: 312 ILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFC 371

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ +K   VL  +E       I TY  +++ Y +GG I+K   +F  +    L+P VV
Sbjct: 372 KAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVV 431

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ S L+  ++ +       +  EM+  G  P       L    +    +E+   + + M
Sbjct: 432 SYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRM 491

Query: 241 HKD 243
            K+
Sbjct: 492 KKE 494



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 4/221 (1%)

Query: 45  NLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           N+ V  F  +     A  V E ++   + PT++++  +L  Y K GN+ K   V +++  
Sbjct: 364 NILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKT 423

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
           +GL+P     NS+L+   +  Q E    +L  M           Y  L   Y R G +EK
Sbjct: 424 AGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEK 483

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLI 221
             G+FQ +  + L  D+V + + L A           E+F+++ DAG   +  T   +L 
Sbjct: 484 AFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLD 543

Query: 222 SACSSEDQIEQVTTLVRTMHKD-MKTALPIYFNLYGEKGVA 261
            A +   ++E+   LV  M +D  K    IY +L    GV+
Sbjct: 544 GAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVS 584



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 26/226 (11%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+ ++   I+          A A  EEM   GI         +++ Y+  GN    E  
Sbjct: 164 PNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHW 223

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG- 155
             +     L P   V NS++  Y + G  E +E +L  ME+  +  ++  Y  ++N +  
Sbjct: 224 FEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAE 283

Query: 156 ------------------RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                             + G + K   + + +    + P+ + +   +  Y+R   +  
Sbjct: 284 IRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTA 343

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             +++E+M+ AG  PD     +L+ A     ++++   ++  +  +
Sbjct: 344 AFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEAN 389



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 64/148 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A FE M+   I P +  +  L+ AY++  ++        +M   G++ +  V  S+++
Sbjct: 150 ARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIIS 209

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E  E      +  +       YN ++  Y + G +E +E L   +  +  + 
Sbjct: 210 GYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQG 269

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++  +T+ L  ++  +   +CL  F  +
Sbjct: 270 NLGLYTTVLNGFAEIRDEEKCLSFFHRL 297



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFVIN 113
           +A  +   M+R G  P    +  L+ AY  +G     E ++ +M KS     KPD    N
Sbjct: 554 EAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYN 613

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +++ +Y + G   + EE+   + +     D +T+  L+
Sbjct: 614 TLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALM 651



 Score = 37.4 bits (85), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +  Y +L++ Y R G        F+++ A  +KP+V  +TS + AY+  +     +   E
Sbjct: 131 LREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTE 190

Query: 204 EMIDAG 209
           EM+  G
Sbjct: 191 EMLSQG 196


>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic [Vitis vinifera]
 gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 95/165 (57%), Gaps = 1/165 (0%)

Query: 58  AHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A   F++MK +    P + ++ +LL A+++  NV +   +  ++++S + PD F  N ++
Sbjct: 192 ALGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVM 251

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YG+ G  ++ME VL+ M+      DI T+N+LI+ YGR    +KME +F+SL   + K
Sbjct: 252 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEK 311

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           P + T+ S +  Y + +L  +   +F++M D G  P+  T + LI
Sbjct: 312 PTLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLI 356



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 85/161 (52%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L  F  +   + A+A+F+E+    ++P + +   ++ AY K G + + E V+++M  +  
Sbjct: 216 LRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQC 275

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KPD    N +++ YGR  +F+KME+V  ++ +      + T+N +I  YG+    EK E 
Sbjct: 276 KPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKPTLPTFNSMITNYGKARLKEKAEN 335

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           +F+ +      P+ +T+ S +  Y       R  EIF+EM+
Sbjct: 336 VFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREIFDEMM 376



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 7/208 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++F F  +   Y       +  +V   MK     P + +  +L+ +Y +     K E 
Sbjct: 241 SPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQ 300

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V   + +S  KP     NSM+  YG+    EK E V   M    YA +  TY  LI +YG
Sbjct: 301 VFKSLLRSKEKPTLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYG 360

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
               I +   +F  + A + +  V T  + L  Y    L      + E       +P   
Sbjct: 361 FCDCISRAREIFDEMMASKKEMKVSTLNAMLEVYCMNGLPMEADLLLERARKNRPFPGSS 420

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKD 243
           T K+L  A +  DQ E +  L++ M  D
Sbjct: 421 TYKLLYKAYTKADQKELLEKLLKLMDSD 448



 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLK-PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           L     KT    +C  V   M K      D  V + ++++ G+ GQ      + + M   
Sbjct: 104 LFEELGKTDKWLQCLEVFRWMQKQRWYIADNGVYSKLISVMGKKGQTRMAMWLFSEMRNS 163

Query: 139 SYAADISTYNILI--NIYGRG---------GFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
               D S YN LI  +++ R          G+ +KM+G+      +R KP++VT+   L 
Sbjct: 164 GCRPDTSVYNALITAHLHSRDKSKALIKALGYFDKMKGM------ERCKPNIVTYNILLR 217

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247
           A+++ +   +   +F+E+ ++   PD  T   ++ A      I+++ +++  M  +    
Sbjct: 218 AFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 277

Query: 248 LPIYFNL----YGEK 258
             I FN+    YG +
Sbjct: 278 DIITFNVLIDSYGRR 292


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 100/184 (54%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            ++F+EMK L I+P   ++  ++TA  +  +  +   +  +M ++G  P+    N++L++
Sbjct: 130 QSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDV 189

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           YG+ G  ++  E+L  ME    + +I TYN LI  Y R G  ++   L +SL +K L PD
Sbjct: 190 YGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPD 249

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
             T+ + ++A++R + Y + LE F EM    C P+  T  +LI      ++++ +  + +
Sbjct: 250 EFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFK 309

Query: 239 TMHK 242
            M +
Sbjct: 310 FMQE 313



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  EM+  GI+P + ++  L+ AY++ G   +   +   +   GL PD F   +++
Sbjct: 198 EASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLI 257

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R  ++EK  E  T M K +   +I TYNILI+IYGR   ++ M  +F+ +  K   
Sbjct: 258 SAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCT 317

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           PD+VTW S L ++    +      +F EM  AG  P   T  +LI
Sbjct: 318 PDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILI 362



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 90/168 (53%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A     ++   G +P +K    +++  +K G + +   ++ ++ K+ LKPD    N +
Sbjct: 478 NEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCL 537

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +++YGR G + K EEV++ M +   A ++ TYN L+  Y + G ++    +F  + A R+
Sbjct: 538 MSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARV 597

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +PD  T+ + + +YS   LY+  L + E M + GC P   T K L+  
Sbjct: 598 RPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDG 645



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 93/194 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A   F EM++   TP + ++ +L+  Y +   +     V   M +    PD    NS
Sbjct: 266 YEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNS 325

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +G  G   ++  V   M++  Y   + T+NILI  YGR G+++    +++ L    
Sbjct: 326 LLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTG 385

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P V T+ + +A+ +R+  +++C ++ +EM +AG          LI + ++  Q  Q+ 
Sbjct: 386 LQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLR 445

Query: 235 TLVRTMHKDMKTAL 248
             +  + K  K  L
Sbjct: 446 KYIDELEKSAKQPL 459



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV-AKCEGVINQMHKSGLKPDTFVIN 113
           F +   +FE M+R G      ++ ++L  Y K G+   + + +  +M    + PD +  N
Sbjct: 90  FDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYN 149

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M+    +    ++   +   M++     +  TYN L+++YG+GG  ++   L   + A 
Sbjct: 150 TMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAA 209

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + P++VT+   +AAY+R  L      + + ++  G  PD  T   LISA +  ++ E+ 
Sbjct: 210 GISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKA 269

Query: 234 TTLVRTMHKDMKTALPIYFNL 254
                 M K   T   + +N+
Sbjct: 270 LETFTEMRKTNCTPNIVTYNI 290



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 78/158 (49%)

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
           AY K     + +  +NQ++ +G  PD  V N+M+++  + G  E+  ++L  + K     
Sbjct: 470 AYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKP 529

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D  TYN L+++YGR G   K E +   +      P+++T+ + L +Y++         +F
Sbjct: 530 DGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVF 589

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +M+ A   PD  T   L+ + SS    ++  +++  M
Sbjct: 590 GDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYM 627



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGL 166
           D +   S++++  R  +F++   +   M++     +  TYN+++++YG RG   ++++ L
Sbjct: 73  DVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSL 132

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           FQ +    + PD  T+ + + A  +    +  L +F+EM +AGC P+  T   L+ 
Sbjct: 133 FQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLD 188



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 86/197 (43%), Gaps = 7/197 (3%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +++ + R G+ PT+ +   L+ + ++ G   +CE V  +M ++GL+        +++ Y 
Sbjct: 377 IYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYA 436

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINI----YGRGGFIEKMEGLFQSLPAKRLK 176
             GQF ++ + +  +EK   +A      IL       Y +     + +     L      
Sbjct: 437 NSGQFFQLRKYIDELEK---SAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHS 493

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+  + + ++  +++    R +++ EE+  A   PDG T   L+S    E    +   +
Sbjct: 494 PDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEV 553

Query: 237 VRTMHKDMKTALPIYFN 253
           +  M +  K    I +N
Sbjct: 554 MSEMRRAGKAPNLITYN 570



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V  EM+R G  P + ++  LL +Y+K G +     V   M  + ++PD F  N+
Sbjct: 547 YHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNT 606

Query: 115 MLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIY 154
           ++  Y  LG +++   V+  M E G     I T+  L++ Y
Sbjct: 607 LVGSYSSLGLYKEALSVIEYMTEHGCQPTQI-TFKALLDGY 646



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           S+L++ G   Q     E+  ++++  SY+ D+  Y  LI+I  R    ++   LF+++  
Sbjct: 43  SILSVLGNHEQLPAALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQR 102

Query: 173 KRLKPDVVTWTSRLAAYSRK-KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +  + + VT+   L  Y ++   + R   +F+EM D    PD  T   +I+AC      +
Sbjct: 103 EGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQ 162

Query: 232 QVTTLVRTMHK 242
           +   L + M +
Sbjct: 163 EALRLFQEMKE 173


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 100/184 (54%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            ++F+EMK L I+P   ++  ++TA  +  +  +   +  +M ++G  P+    N++L++
Sbjct: 269 QSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDV 328

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           YG+ G  ++  E+L  ME    + +I TYN LI  Y R G  ++   L +SL +K L PD
Sbjct: 329 YGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPD 388

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
             T+ + ++A++R + Y + LE F EM    C P+  T  +LI      ++++ +  + +
Sbjct: 389 EFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFK 448

Query: 239 TMHK 242
            M +
Sbjct: 449 FMQE 452



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  EM+  GI+P + ++  L+ AY++ G   +   +   +   GL PD F   +++
Sbjct: 337 EASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLI 396

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R  ++EK  E  T M K +   +I TYNILI+IYGR   ++ M  +F+ +  K   
Sbjct: 397 SAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCT 456

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           PD+VTW S L ++    +      +F EM  AG  P   T  +LI
Sbjct: 457 PDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILI 501



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 90/168 (53%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A     ++   G +P +K    +++  +K G + +   ++ ++ K+ LKPD    N +
Sbjct: 617 NEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCL 676

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +++YGR G + K EEV++ M +   A ++ TYN L+  Y + G ++    +F  + A R+
Sbjct: 677 MSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARV 736

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +PD  T+ + + +YS   LY+  L + E M + GC P   T K L+  
Sbjct: 737 RPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDG 784



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 93/194 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A   F EM++   TP + ++ +L+  Y +   +     V   M +    PD    NS
Sbjct: 405 YEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNS 464

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +G  G   ++  V   M++  Y   + T+NILI  YGR G+++    +++ L    
Sbjct: 465 LLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTG 524

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P V T+ + +A+ +R+  +++C ++ +EM +AG          LI + ++  Q  Q+ 
Sbjct: 525 LQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLR 584

Query: 235 TLVRTMHKDMKTAL 248
             +  + K  K  L
Sbjct: 585 KYIDELEKSAKQPL 598



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV-AKCEGVINQMHKSGLKPDTFVIN 113
           F +   +FE M+R G      ++ ++L  Y K G+   + + +  +M    + PD +  N
Sbjct: 229 FDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYN 288

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M+    +    ++   +   M++     +  TYN L+++YG+GG  ++   L   + A 
Sbjct: 289 TMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAA 348

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + P++VT+   +AAY+R  L      + + ++  G  PD  T   LISA +  ++ E+ 
Sbjct: 349 GISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKA 408

Query: 234 TTLVRTMHKDMKTALPIYFNL 254
                 M K   T   + +N+
Sbjct: 409 LETFTEMRKTNCTPNIVTYNI 429



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%)

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
           AY K G   + +  +NQ++ +G  PD  V N+M+++  + G  E+  ++L  + K     
Sbjct: 609 AYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKP 668

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D  TYN L+++YGR G   K E +   +      P+++T+ + L +Y++         +F
Sbjct: 669 DGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVF 728

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +M+ A   PD  T   L+ + SS    ++  +++  M
Sbjct: 729 GDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYM 766



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGL 166
           D +   S++++  R  +F++   +   M++     +  TYN+++++YG RG   ++++ L
Sbjct: 212 DVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSL 271

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           FQ +    + PD  T+ + + A  +    +  L +F+EM +AGC P+  T   L+ 
Sbjct: 272 FQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLD 327



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 87/197 (44%), Gaps = 7/197 (3%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +++ + R G+ PT+ +   L+ + ++ G   +CE V  +M ++GL+        +++ Y 
Sbjct: 516 IYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYA 575

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINI----YGRGGFIEKMEGLFQSLPAKRLK 176
             GQF ++ + +  +EK   +A      IL       Y + G   + +     L      
Sbjct: 576 NSGQFFQLRKYIDELEK---SAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHS 632

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+  + + ++  +++    R +++ EE+  A   PDG T   L+S    E    +   +
Sbjct: 633 PDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEV 692

Query: 237 VRTMHKDMKTALPIYFN 253
           +  M +  K    I +N
Sbjct: 693 MSEMRRAGKAPNLITYN 709



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  EM+R G  P + ++  LL +Y+K G +     V   M  + ++PD F  N+++ 
Sbjct: 689 AEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVG 748

Query: 118 LYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGR 156
            Y  LG +++   V+  M E G     I T+  L++ Y R
Sbjct: 749 SYSSLGLYKEALSVIEYMTEHGCQPTQI-TFKALLDGYNR 787



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           S+L++ G   Q     E+  ++++  SY+ D+  Y  LI+I  R    ++   LF+++  
Sbjct: 182 SILSVLGNHEQLPAALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQR 241

Query: 173 KRLKPDVVTWTSRLAAYSRK-KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +  + + VT+   L  Y ++   + R   +F+EM D    PD  T   +I+AC      +
Sbjct: 242 EGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQ 301

Query: 232 QVTTLVRTMHK 242
           +   L + M +
Sbjct: 302 EALRLFQEMKE 312


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 82/155 (52%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+E+M   G+ P+  ++  L++AY K G V K   +   M + G + +    +S+++   
Sbjct: 127 VYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACE 186

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G++E   E+ + M K +   ++ TYN LI     GG  EK   LF+ +  +  KPD +
Sbjct: 187 KAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSI 246

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           T+   + AY R   +RR L+ FE+M   GC+PD  
Sbjct: 247 TYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAA 281



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRL-------GITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PNL  +   I    +     E +RL       GI   ++++  +++A +K+G   +   
Sbjct: 67  SPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALK 126

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V  +M  +G+KP      ++++ YG+ GQ EK  ++   M +     ++ TY+ LI+   
Sbjct: 127 VYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACE 186

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  E    LF  +  +  KP+VVT+ S +AA S    + +  E+FE+M   GC PD  
Sbjct: 187 KAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSI 246

Query: 216 TAKVLISA 223
           T   LI+A
Sbjct: 247 TYCGLITA 254



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 86/180 (47%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  GI   + ++  L+    K   +   + V  QM + G  P+    N ++++     
Sbjct: 25  EMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVEASKR 84

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           +  +   +  A+ +    A++ TYN +I+   + G  E+   +++ + A  +KP   T+T
Sbjct: 85  KTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYT 144

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + ++AY +K    + L+IF +MI  GC  +  T   LISAC    + E    L   MHK+
Sbjct: 145 ALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKE 204



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 90/184 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V+++M   G +P + ++ +L+   +      +   +   + +SG++ +    N++++
Sbjct: 54  AQDVYKQMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVIS 113

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + GQ E+  +V   M         +TY  LI+ YG+ G +EK   +F+ +  +  + 
Sbjct: 114 ACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCER 173

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+T++S ++A  +   +   LE+F +M    C P+  T   LI+ACS     E+ + L 
Sbjct: 174 NVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELF 233

Query: 238 RTMH 241
             M 
Sbjct: 234 EQMQ 237



 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 8/156 (5%)

Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
           +   +M++  G   Q  +  E++  M       ++ TY+ L+N+  +   ++  + +++ 
Sbjct: 1   YTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQ 60

Query: 170 LPAKRLKPDVVTWT--SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           +  +   P++VT+     + A  RK   RR L +   ++ +G   +  T   +ISAC+  
Sbjct: 61  MLEEGCSPNLVTYNILIDVEASKRKTTERRRLAV--ALVRSGIQAEVRTYNTVISACNKS 118

Query: 228 DQIEQVTTLVRTM----HKDMKTALPIYFNLYGEKG 259
            Q EQ   +   M     K   T      + YG+KG
Sbjct: 119 GQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKG 154



 Score = 41.2 bits (95), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++  A  +FE+M+  G  P   ++  L+TAY + G   +      QM   G  PD  V N
Sbjct: 225 HWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFN 284

Query: 114 SML 116
           S++
Sbjct: 285 SLM 287


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A + F+ M   G+ P ++++  ++ + SK G   +  GV  +  K+G+ PD F+ NS++
Sbjct: 609 EALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLI 668

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G  EK  ++   M       +I  YN LIN   + G + K   LF  +  K L 
Sbjct: 669 SGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLV 728

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+++ +  Y +        ++F+EMI  G  PDG    +LI  C  E  +E+  +L
Sbjct: 729 PDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSL 788



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 111/245 (45%), Gaps = 20/245 (8%)

Query: 1   MKKPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHA 60
           M K      ++ +A   P +W +N        +LI+  L  H             + A  
Sbjct: 397 MAKAMSLFNEMLMAGLEPDTWTYN--------LLIDGYLKSHD-----------MAKACE 437

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EMK   +TP+  ++ +L++    + ++ K   V++QM ++G+KP+ F+  +++  Y 
Sbjct: 438 LLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYV 497

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  ++E   E+L  M       D+  YN LI    R   +E+ + L   +  K +KP+  
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVRT 239
           T+ + +  YS+    +     F++M+ +G  P+     +LI   C   + +E ++T    
Sbjct: 558 TYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCM 617

Query: 240 MHKDM 244
           + K +
Sbjct: 618 LEKGL 622



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FE M   G+ P   ++  L+  + K GN+ +   + ++M   GLK +    N+M+
Sbjct: 329 EAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMI 388

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               + G+  K   +   M       D  TYN+LI+ Y +   + K   L   + A++L 
Sbjct: 389 GGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLT 448

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P   T++  ++        ++  E+ ++MI  G  P+      LI A   E + E    L
Sbjct: 449 PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIEL 508

Query: 237 VRTM 240
           ++ M
Sbjct: 509 LKIM 512



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 4/215 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           FI      +A  + +EM   G+   + ++  ++   +K G +AK   + N+M  +GL+PD
Sbjct: 356 FIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPD 415

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           T+  N +++ Y +     K  E+L  M+         TY++LI+       ++K   +  
Sbjct: 416 TWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLD 475

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +    +KP+V  + + + AY ++  Y   +E+ + MI  G  PD      LI       
Sbjct: 476 QMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAK 535

Query: 229 QIEQVTTLVRTM-HKDMKTALPIY---FNLYGEKG 259
           ++E+   L+  M  K +K     Y    NLY + G
Sbjct: 536 KVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 94/219 (42%), Gaps = 34/219 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF +  + G+ P +  +  L++ + K G++ K   + ++M  +G+ P+  V N+++
Sbjct: 644 EAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLI 703

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   +LG+  K  E+   +E+     D+ TY+ +I+ Y + G + +   LF  + +K + 
Sbjct: 704 NGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGIS 763

Query: 177 PD----------------------------------VVTWTSRLAAYSRKKLYRRCLEIF 202
           PD                                  +  + S + ++ +        E+F
Sbjct: 764 PDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELF 823

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           ++M+D    P+  T  +LI A    + +E+   L   M 
Sbjct: 824 DDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 862



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 1/180 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+  M    I P + ++  ++ A+ K G+V K + V+++M K   KP+ F  N+ +    
Sbjct: 229 VYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-CKPNLFTYNAFIGGLC 287

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  ++  EV   M +     D  TY +L++ + +    ++ + +F+S+P+  L P+  
Sbjct: 288 QTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRF 347

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T+ +  + ++      L I +EMI  G   +  T   +I   +   ++ +  +L   M
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM 407



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 44  PNLF---VFIFSIYFSDAHAVFEEMKRL----GITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNLF    FI  +  + A     E+K+L    G+ P   ++ LL+  + K     + + +
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M  SGL P+ F   ++++ + + G  E+   +   M       ++ TYN +I    +
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G + K   LF  +    L+PD  T+   +  Y +     +  E+  EM      P   T
Sbjct: 394 AGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFT 453

Query: 217 AKVLISA-CSSED 228
             VLIS  C S D
Sbjct: 454 YSVLISGLCHSSD 466



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 1/187 (0%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P +  +  L+    +   V + + ++  M + G+KP+     + +NLY + G+ +  
Sbjct: 516 GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVA 575

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E     M       +   Y ILI  +   G   +    F+ +  K L PD+  +++ + +
Sbjct: 576 ERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHS 635

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTA 247
            S+    +  + +F + +  G  PD      LIS    E  IE+ + L   M H  +   
Sbjct: 636 LSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPN 695

Query: 248 LPIYFNL 254
           + +Y  L
Sbjct: 696 IVVYNTL 702



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 1/186 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F E ++  +  ++ +   L+ ++ K G V +   + + M    L P+      +++
Sbjct: 785 ALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILID 843

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG+    E+ E++   ME  +   +  TY  L+  Y + G   KM  LF+ + A+ +  
Sbjct: 844 AYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIAC 903

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D + +    +AY ++      L++  + +  G   +      LI     E QI  V  L+
Sbjct: 904 DAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELL 963

Query: 238 RTMHKD 243
             M K+
Sbjct: 964 SEMGKE 969



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 4/151 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F++M    +TP + ++ +L+ AY K   + + E +   M    + P+T    S+L
Sbjct: 818 EARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLL 877

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKMEGLFQSL-PAKR 174
             Y ++G   KM  +   ME    A D   Y ++ + Y + G  +E ++ L +SL    +
Sbjct: 878 LSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIK 937

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           L+ DV  + + +    ++K     LE+  EM
Sbjct: 938 LEDDV--FDALIFHLCKEKQISTVLELLSEM 966


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 104/198 (52%), Gaps = 5/198 (2%)

Query: 50  IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + S Y  D     A A+ +EM+  GI P + ++  L++   + G +       ++M ++G
Sbjct: 319 LISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNG 378

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            KP+    N+++ ++G  G+F +M  V   +    +  DI T+N L+ ++G+ G   ++ 
Sbjct: 379 CKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVS 438

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           G+F+ +      P+  T+ S +++YSR  L+   ++I++ M++AG YPD  T   ++SA 
Sbjct: 439 GVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSAL 498

Query: 225 SSEDQIEQVTTLVRTMHK 242
           +   + EQ   L   M +
Sbjct: 499 ARGGRWEQAEKLFAEMEE 516



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 3/182 (1%)

Query: 43  TPNLFVFIFS---IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           T N+ + ++S   + + +   +   MK  G+ P   ++  L++   +     +   V ++
Sbjct: 209 TYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDE 268

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  SG +PD    NS+L++YG+  + ++  EV+  ME+      + TYN LI+ Y + G 
Sbjct: 269 MKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGL 328

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E+   L Q +  K +KPDVVT+T+ ++   R       +  ++EM+  GC P+  T   
Sbjct: 329 LEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNA 388

Query: 220 LI 221
           LI
Sbjct: 389 LI 390



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A   F E+++   +  +     +++ Y K   V K E +++ M +S +       NS
Sbjct: 574 LAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNS 633

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y RLG  EK E +LT ++      D  +YN +I  YGR G +++   LF  +    
Sbjct: 634 LMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 693

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           LKPDVVT+   + +Y    ++   +E+   M+  GC P+  T
Sbjct: 694 LKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERT 735



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 84/161 (52%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   SK  N+A+ E    ++ +     D  V+N+M+++YG+     K+E++L+ M++ +
Sbjct: 564 LVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESA 623

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                +TYN L+++Y R G  EK E +   + +  ++PD  ++ + + AY RK   +   
Sbjct: 624 INLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEAS 683

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +F EM  +G  PD  T  + + +  S    E+   LVR M
Sbjct: 684 RLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYM 724



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 82/167 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  AVF+E++  G  P + +   LL  + + G  ++  GV  +M K+G  P+     S
Sbjct: 399 FPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 458

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F+   ++   M +     D+STYN +++   RGG  E+ E LF  +  + 
Sbjct: 459 LISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERD 518

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            KPD  +++S L AY+  K   +   + +++      P     K L+
Sbjct: 519 CKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 565



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 2/185 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG-QFEKMEE 130
           P   ++  L++A+S+ G       V  +M  SG++P     N +L++Y ++   ++++ E
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           ++ +M++   A D  TYN LI+   R    ++   +F  + A   +PD VT+ S L  Y 
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 289

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KDMKTALP 249
           + + +   +E+ +EM   GC P   T   LIS+   +  +EQ   L + M  K +K  + 
Sbjct: 290 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVV 349

Query: 250 IYFNL 254
            Y  L
Sbjct: 350 TYTTL 354



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 91/182 (50%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           ++EM R G  P + ++  L+  +   G   +   V +++  +G  PD    N++L ++G+
Sbjct: 371 YDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQ 430

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G   ++  V   M+K  Y  +  TY  LI+ Y R G  +    +++ +    + PDV T
Sbjct: 431 NGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVST 490

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + L+A +R   + +  ++F EM +  C PD  +   L+ A ++  +++++  L   ++
Sbjct: 491 YNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIY 550

Query: 242 KD 243
            +
Sbjct: 551 SE 552



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 1/178 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
           F DA AVF  M   G+ P + ++ ++L  YSK     K    ++  M + G+ PD +  N
Sbjct: 188 FRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYN 247

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   R   +++  +V   M+   +  D  T+N L+++YG+    ++   + Q +   
Sbjct: 248 TLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERV 307

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              P VVT+ S +++Y +  L  + + + +EM   G  PD  T   LIS      +I+
Sbjct: 308 GCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKID 365



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           N+   + SIY           +   MK   I  +  ++  L+  YS+ G+  KCE ++ +
Sbjct: 594 NVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTE 653

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +  SG++PD +  N+++  YGR GQ ++   + + M+      D+ TYNI +  Y     
Sbjct: 654 IKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSM 713

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            E+   L + +  +  KP+  T+ S +  Y R
Sbjct: 714 FEEAIELVRYMVTQGCKPNERTYNSIVEGYCR 745



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 86/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +F EM+     P   S+  LL AY+    + K + + + ++   ++P  +++ +
Sbjct: 504 WEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKT 563

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +  ++    + E+    + +   + DI+  N +++IYG+   + K+E +   +    
Sbjct: 564 LVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESA 623

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +     T+ S +  YSR     +C  I  E+  +G  PD  +   +I A   + Q+++ +
Sbjct: 624 INLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEAS 683

Query: 235 TLVRTM 240
            L   M
Sbjct: 684 RLFSEM 689



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  E+K  G+ P   S+  ++ AY + G + +   + ++M  SGLKPD    N  +  Y 
Sbjct: 650 ILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYV 709

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
               FE+  E++  M       +  TYN ++  Y R G +   +    +LP
Sbjct: 710 SNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLP 760


>gi|224108157|ref|XP_002314741.1| predicted protein [Populus trichocarpa]
 gi|222863781|gb|EEF00912.1| predicted protein [Populus trichocarpa]
          Length = 525

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 108/212 (50%), Gaps = 3/212 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS A  V+EE+K  G  P   ++  ++ AY + G  +K E V ++M + G        +S
Sbjct: 303 FSAAVKVYEELKYDGCDPGQVTYASVINAYCRAGLYSKAEMVFSEMEEKGFDKCVVAYSS 362

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+++YG+ G+      ++  M+      ++  YN L++++GR   + ++E L++ +  ++
Sbjct: 363 MISMYGKTGRARDATRLVAKMKLKGCEPNVWIYNSLLDMHGRAKNLRQVEKLWKEMKRRK 422

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD VT++S ++AY++ K Y  C+  + E    G   DG  A ++    S   +I+++ 
Sbjct: 423 VAPDKVTYSSVISAYNKSKEYEMCVRYYHEYRINGGVIDGAMAGIMAGVFSKISRIDELV 482

Query: 235 TLVRTMHKDMKTALPIYFNLYGEKGVARSNLG 266
            L+R M  +     PI   LY     A  + G
Sbjct: 483 KLLRDMKSE---GTPIDERLYRSATNAMRDAG 511



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 5/188 (2%)

Query: 58  AHAVFEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINS 114
           A  +F+E   KR+   P +   ++L+  Y + G + K   ++  M  +  LK    +  +
Sbjct: 235 AEELFKEALEKRMLRDPEIVLRLVLM--YIEEGQMEKTIEIVKVMKGTANLKVSDCIFCA 292

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + +   F    +V   ++         TY  +IN Y R G   K E +F  +  K 
Sbjct: 293 IVNGFSKRRGFSAAVKVYEELKYDGCDPGQVTYASVINAYCRAGLYSKAEMVFSEMEEKG 352

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
               VV ++S ++ Y +    R    +  +M   GC P+      L+        + QV 
Sbjct: 353 FDKCVVAYSSMISMYGKTGRARDATRLVAKMKLKGCEPNVWIYNSLLDMHGRAKNLRQVE 412

Query: 235 TLVRTMHK 242
            L + M +
Sbjct: 413 KLWKEMKR 420



 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 12/169 (7%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V E+M   GI    + +  ++ AY K G+  K   + N+     L     ++  +  + 
Sbjct: 128 SVHEKMILAGIPLDSRCYCQIMKAYYKLGDAEKVVALFNEFESRKLDSKPMILRQIFKIL 187

Query: 120 ----GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
               GR GQ  +  E    M K     D S Y+ LI  +     +E  E LF+    KR+
Sbjct: 188 CLSLGRSGQAFQALEYSRDMRKKGILEDSSIYSSLICSFANIREVEVAEELFKEALEKRM 247

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
             D       +  Y  +    + +EI + M         GTA + +S C
Sbjct: 248 LRDPEIVLRLVLMYIEEGQMEKTIEIVKVM--------KGTANLKVSDC 288


>gi|356521196|ref|XP_003529243.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Glycine max]
          Length = 601

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 104/192 (54%), Gaps = 4/192 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS A  VFEE+   G  P   ++  ++ AY + G  +K E V  +M + G     +  ++
Sbjct: 378 FSAAVKVFEELISKGNEPGQVTYASVINAYWRLGQYSKAEEVFLEMEQKGFDKCVYAYST 437

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+ +YGR G+     +++  M++     ++  YN LI+++GR   ++++E L++ +  +R
Sbjct: 438 MIVMYGRTGRVRSAMKLVAKMKERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKEMKRRR 497

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD V++TS + AYS+   +  C+++F E    G   D   A +++   S   Q++++ 
Sbjct: 498 VAPDKVSYTSIIGAYSKAGEFETCVKLFNEYRMNGGLIDRALAGIMVGVFSKVGQVDELV 557

Query: 235 TLVRTMHKDMKT 246
            L+    +DMKT
Sbjct: 558 KLL----QDMKT 565



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 75/167 (44%), Gaps = 2/167 (1%)

Query: 77  HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM- 135
           ++ L+  Y + G + K   V+ +M  + +K    ++ +++N + +   F    +V   + 
Sbjct: 330 YLKLVHMYIEEGLLEKTLEVVKEMEDADVKVSDCILCTVVNGFSKKRGFSAAVKVFEELI 389

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
            KG+    + TY  +IN Y R G   K E +F  +  K     V  +++ +  Y R    
Sbjct: 390 SKGNEPGQV-TYASVINAYWRLGQYSKAEEVFLEMEQKGFDKCVYAYSTMIVMYGRTGRV 448

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           R  +++  +M + GC P+      LI     +  ++Q+  L + M +
Sbjct: 449 RSAMKLVAKMKERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKEMKR 495



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 1/154 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A   F EM + GI+     +  L+ +++  G V   E ++ +        D  V   +
Sbjct: 275 SEALDYFREMTKKGIS-EYSIYSKLIYSFASLGEVDVAEELVREAKGKTTIKDPEVYLKL 333

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +++Y   G  EK  EV+  ME             ++N + +         +F+ L +K  
Sbjct: 334 VHMYIEEGLLEKTLEVVKEMEDADVKVSDCILCTVVNGFSKKRGFSAAVKVFEELISKGN 393

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +P  VT+ S + AY R   Y +  E+F EM   G
Sbjct: 394 EPGQVTYASVINAYWRLGQYSKAEEVFLEMEQKG 427



 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 47/99 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +++EMKR  + P   S+  ++ AYSK G    C  + N+   +G   D  +   M+ ++ 
Sbjct: 489 LWKEMKRRRVAPDKVSYTSIIGAYSKAGEFETCVKLFNEYRMNGGLIDRALAGIMVGVFS 548

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           ++GQ +++ ++L  M+      D   Y    N +   G 
Sbjct: 549 KVGQVDELVKLLQDMKTEGTRLDQRLYQSAWNAFKDAGL 587



 Score = 44.7 bits (104), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/170 (17%), Positives = 69/170 (40%), Gaps = 35/170 (20%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A  VF EM++ G    + ++  ++  Y +TG V     ++ +M + G KP+ ++ NS
Sbjct: 413 YSKAEEVFLEMEQKGFDKCVYAYSTMIVMYGRTGRVRSAMKLVAKMKERGCKPNVWIYNS 472

Query: 115 MLNLYGR-----------------------------------LGQFEKMEEVLTAMEKGS 139
           +++++GR                                    G+FE   ++        
Sbjct: 473 LIDMHGRDKNLKQLEKLWKEMKRRRVAPDKVSYTSIIGAYSKAGEFETCVKLFNEYRMNG 532

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
              D +   I++ ++ + G ++++  L Q +  +  + D   + S   A+
Sbjct: 533 GLIDRALAGIMVGVFSKVGQVDELVKLLQDMKTEGTRLDQRLYQSAWNAF 582



 Score = 37.7 bits (86), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/207 (17%), Positives = 81/207 (39%), Gaps = 39/207 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK---------------------- 92
           F +   VFE ++   +    + ++ ++ AYSK     K                      
Sbjct: 201 FRNTVLVFERIRSSNVVLDSRGYLHIMEAYSKLNECEKVVQLFREFESRKLRGPTCLAQI 260

Query: 93  ----CEGV------------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
               CE +              +M K G+  +  + + ++  +  LG+ +  EE++   +
Sbjct: 261 YEILCESLARCGRASEALDYFREMTKKGIS-EYSIYSKLIYSFASLGEVDVAEELVREAK 319

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
             +   D   Y  L+++Y   G +EK   + + +    +K       + +  +S+K+ + 
Sbjct: 320 GKTTIKDPEVYLKLVHMYIEEGLLEKTLEVVKEMEDADVKVSDCILCTVVNGFSKKRGFS 379

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISA 223
             +++FEE+I  G  P   T   +I+A
Sbjct: 380 AAVKVFEELISKGNEPGQVTYASVINA 406


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 95/188 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V +EM + G+ P   ++ LL+ AY++ G       ++ +M   G+KP ++V + 
Sbjct: 315 LKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 374

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G ++K   VL  M+      D   YN++I+ +G+   +      F  +  + 
Sbjct: 375 ILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEG 434

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDVVTW + + A+ +   + R  E+FEEM ++ C P   T  ++I+    ++  E V 
Sbjct: 435 IEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVE 494

Query: 235 TLVRTMHK 242
            ++  M +
Sbjct: 495 AMLSEMKE 502



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 21/203 (10%)

Query: 41  QHTPNLFVFIFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  Y    HA+  F +M+  GI P + +   L+ A+ K G   +   +  
Sbjct: 404 RHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFE 463

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +S   P T   N M+NL G    +E +E +L+ M++     +I TY  L+++YGR G
Sbjct: 464 EMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSG 523

Query: 159 F-------IEKMEG------------LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                   IE M+             L  +   + L+PDV+T+T+ + A  R + + +  
Sbjct: 524 RYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLRPDVITYTTLMKALIRVEQFDKVP 583

Query: 200 EIFEEMIDAGCYPDGGTAKVLIS 222
            I+EEMI +GC PD     +L S
Sbjct: 584 VIYEEMITSGCAPDRKARAMLRS 606



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 86/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AV  EM+  G+ P    + +++  + K   +       N+M + G++PD    N+
Sbjct: 385 WQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNT 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ ++  E+   M + +     +TYNI+IN+ G     E +E +   +  + 
Sbjct: 445 LIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQG 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+++T+T+ +  Y R   Y+  ++  E M   G  P       L++A +       V 
Sbjct: 505 LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLRPDVI 564

Query: 235 TLVRTM 240
           T    M
Sbjct: 565 TYTTLM 570



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 1/155 (0%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFE 126
           +G+TP   +   L++A    G VA+ E +  +   +G +KP T   N++L  Y R+   +
Sbjct: 257 IGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLK 316

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             E+VL  M +   A D +TY++L++ Y R G  E    L + + A  +KP    ++  L
Sbjct: 317 NAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 376

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           A +  +  +++   +  EM  +G  PD     V+I
Sbjct: 377 AGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMI 411


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 7/206 (3%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L N   L   P  F ++  I +       + A   FE MK+ GI P++ +    L   +
Sbjct: 432 LLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLA 491

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           +TG +++ E + N +HK GL PD+   N ++  Y + GQ +K  ++L+ M       D+ 
Sbjct: 492 ETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVM 551

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             N LIN   + G ++    +F  L   +L P VVT+   L    ++    + LE+F  M
Sbjct: 552 IINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSM 611

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIE 231
            ++GC P+  T   L+   S  D ++
Sbjct: 612 TESGCPPNTITFNSLLDCLSKNDAVD 637



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 90/187 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +F ++ + G++P   ++ +L+  YSK G + K   ++++M   G +PD  +INS+
Sbjct: 497 SEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSL 556

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   + G+ +   ++   ++    A  + TYNIL+   G+ G I K   LF S+     
Sbjct: 557 INTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGC 616

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ +T+ S L   S+       L++F  M    C PD  T   +I     E +I+    
Sbjct: 617 PPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFW 676

Query: 236 LVRTMHK 242
               M K
Sbjct: 677 FFHQMKK 683



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 92/203 (45%), Gaps = 4/203 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEMK +G+ P + ++ + + A  +   +    G+  +M   G  PD      +++   
Sbjct: 257 LLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALC 316

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+ +K +E+   M   S++ D  TY  L++ +G+ G +E ++  +  +      PDVV
Sbjct: 317 AAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVV 376

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T  + A  +     R  ++ + M   G +P+  T   +I       ++++   L+  M
Sbjct: 377 TYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENM 436

Query: 241 H----KDMKTALPIYFNLYGEKG 259
                K    +  ++ + YG+ G
Sbjct: 437 ESLGVKPTAFSYVLFIDYYGKSG 459



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 7/176 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN++ +   I          DA  +F+EM   G  P + ++ +L+ A    G + K + +
Sbjct: 268 PNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKEL 327

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M  S   PD     ++++ +G++G  E ++     ME   YA D+ TY ILI    +
Sbjct: 328 YVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCK 387

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            G +++   +   +  K + P++ T+ + +    + +     LE+ E M   G  P
Sbjct: 388 SGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKP 443



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 1/188 (0%)

Query: 57  DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           DA  VF++  K LGI PT++S+  L+     +    K   +   M  +G  P+ F  N +
Sbjct: 778 DAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLL 837

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ +G+  +  K+ ++ + M       +  T+NI+I+   +   + K   L+  L +   
Sbjct: 838 LDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDF 897

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P   T+   +    +     + ++IFEEM+D GC P+     +LI+      +I+    
Sbjct: 898 SPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACE 957

Query: 236 LVRTMHKD 243
           L + M K+
Sbjct: 958 LFKKMVKE 965



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 80/159 (50%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +F++M + GI P +KS+ +L+     TG + +      ++  +GL PDT   N ++N
Sbjct: 955  ACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIIN 1014

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              G+  + ++   + + M+    + D+ TYN LI   G  G ++    +++ L    L+P
Sbjct: 1015 GLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEP 1074

Query: 178  DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
             V T+ + +  +S      +   +F++M+  GC P+  T
Sbjct: 1075 SVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTET 1113



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 93/207 (44%), Gaps = 1/207 (0%)

Query: 35  INFLLLQHTPN-LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           + F+L  ++ N L   +   + ++A  V++ M   G+ P+MK++  L+ A  + G+  K 
Sbjct: 195 VGFILNAYSYNGLIHLLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKI 254

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             ++ +M   GL+P+ +     +   GR  + +    +   M+      D+ TY +LI+ 
Sbjct: 255 MNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDA 314

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
               G ++K + L+  + A    PD VT+ + +  + +          + EM   G  PD
Sbjct: 315 LCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPD 374

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTM 240
             T  +LI A      +++   ++  M
Sbjct: 375 VVTYTILIEALCKSGDVDRAFDMLDVM 401



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           + EM+  G  P + ++ +L+ A  K+G+V +   +++ M   G+ P+    N+M+    +
Sbjct: 363 WNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLK 422

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
             + ++  E+L  ME         +Y + I+ YG+ G   K    F+++  + + P +  
Sbjct: 423 ARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAA 482

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             + L   +         +IF ++   G  PD  T  +L+   S   QI++ T L+  M
Sbjct: 483 CNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEM 541



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 65/156 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + M   GI P + ++  ++    K   + +   ++  M   G+KP  F     ++
Sbjct: 394 AFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFID 453

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG+ G   K  +    M+K      I+  N  +      G I + E +F  L    L P
Sbjct: 454 YYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSP 513

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D VT+   +  YS+     +  ++  EMI  GC PD
Sbjct: 514 DSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPD 549



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%)

Query: 40   LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
            + H   +   + S   + A  ++ E+     +PT  ++  L+    K G   +   +  +
Sbjct: 867  ITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEE 926

Query: 100  MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
            M   G  P++ + N ++N +G+ G+ +   E+   M K     D+ +Y IL+      G 
Sbjct: 927  MLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGR 986

Query: 160  IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            I++    F+ L    L PD V++   +    + +     L +F EM + G  PD  T   
Sbjct: 987  IDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNA 1046

Query: 220  LI 221
            LI
Sbjct: 1047 LI 1048



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 104/252 (41%), Gaps = 42/252 (16%)

Query: 52   SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
            S +   A  +FE+MK  G  P   ++ LLL A+ K+  + K   + ++M   G +P+   
Sbjct: 809  SNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAIT 868

Query: 112  -------------INSMLNLYGRL----------------------GQFEKMEEVLTAME 136
                         +N  L+LY  L                      G+ E+  ++   M 
Sbjct: 869  HNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEML 928

Query: 137  KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
                  +   YNILIN +G+ G I+    LF+ +  + ++PD+ ++T  +          
Sbjct: 929  DYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRID 988

Query: 197  RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-----RTMHKDMKT--ALP 249
              ++ FEE+   G  PD  +   +I+      ++++  +L      R +  D+ T  AL 
Sbjct: 989  EAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALI 1048

Query: 250  IYFNLYGEKGVA 261
            ++  + G+  VA
Sbjct: 1049 LHLGIAGKVDVA 1060



 Score = 40.8 bits (94), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 47/106 (44%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              +A ++F EMK  GI+P + ++  L+      G V     +  ++   GL+P  F  N+
Sbjct: 1022 LDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNA 1081

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            ++  +   G  ++   V   M     + +  T+  L N Y R G +
Sbjct: 1082 LIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLV 1127


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 95/188 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V +EM + G+ P   ++ LL+ AY++ G       ++ +M   G+KP ++V + 
Sbjct: 315 LKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 374

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G ++K   VL  M+      D   YN++I+ +G+   +      F  +  + 
Sbjct: 375 ILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEG 434

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDVVTW + + A+ +   + R  E+FEEM ++ C P   T  ++I+    ++  E V 
Sbjct: 435 IEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVE 494

Query: 235 TLVRTMHK 242
            ++  M +
Sbjct: 495 AMLSEMKE 502



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 83/169 (49%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++    A+  EMK  G+ P + ++  L+  Y ++G   +    I  M   GLKP   + +
Sbjct: 489 HWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYH 548

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y + G  +    V+ AM+       I   N LIN +G    + +   + Q +   
Sbjct: 549 ALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMREN 608

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            L+PDV+T+T+ + A  R + + +   I+EEMI +GC PD     +L S
Sbjct: 609 GLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRS 657



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 89/189 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AV  EM+  G+ P    + +++  + K   +       N+M + G++PD    N+
Sbjct: 385 WQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNT 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ ++  E+   M + +     +TYNI+IN+ G     E +E +   +  + 
Sbjct: 445 LIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQG 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+++T+T+ +  Y R   Y+  ++  E M   G  P       L++A +     +   
Sbjct: 505 LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 564

Query: 235 TLVRTMHKD 243
            +V+ M  D
Sbjct: 565 NVVKAMKAD 573



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 1/156 (0%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFE 126
           +G+TP   +   L++A    G VA+ E +  +   +G +KP T   N++L  Y R+G  +
Sbjct: 257 IGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLK 316

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             E+VL  M +   A D +TY++L++ Y R G  E    L + + A  +KP    ++  L
Sbjct: 317 NAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 376

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           A +  +  +++   +  EM  +G  PD     V+I 
Sbjct: 377 AGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMID 412


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 95/188 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V +EM + G+ P   ++ LL+ AY++ G       ++ +M   G+KP ++V + 
Sbjct: 315 LKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 374

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G ++K   VL  M+      D   YN++I+ +G+   +      F  +  + 
Sbjct: 375 ILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEG 434

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDVVTW + + A+ +   + R  E+FEEM ++ C P   T  ++I+    ++  E V 
Sbjct: 435 IEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVE 494

Query: 235 TLVRTMHK 242
            ++  M +
Sbjct: 495 AMLSEMKE 502



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 83/169 (49%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++    A+  EMK  G+ P + ++  L+  Y ++G   +    I  M   GLKP   + +
Sbjct: 489 HWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYH 548

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y + G  +    V+ AM+       I   N LIN +G    + +   + Q +   
Sbjct: 549 ALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMREN 608

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            L+PDV+T+T+ + A  R + + +   I+EEMI +GC PD     +L S
Sbjct: 609 GLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRS 657



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 89/189 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AV  EM+  G+ P    + +++  + K   +       N+M + G++PD    N+
Sbjct: 385 WQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNT 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ ++  E+   M + +     +TYNI+IN+ G     E +E +   +  + 
Sbjct: 445 LIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQG 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+++T+T+ +  Y R   Y+  ++  E M   G  P       L++A +     +   
Sbjct: 505 LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 564

Query: 235 TLVRTMHKD 243
            +V+ M  D
Sbjct: 565 NVVKAMKAD 573



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 1/156 (0%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFE 126
           +G+TP   +   L++A    G VA+ E +  +   +G +KP T   N++L  Y R+   +
Sbjct: 257 IGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLK 316

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             E+VL  M +   A D +TY++L++ Y R G  E    L + + A  +KP    ++  L
Sbjct: 317 NAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 376

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           A +  +  +++   +  EM  +G  PD     V+I 
Sbjct: 377 AGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMID 412


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 89/181 (49%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++F EM+  GI P + ++  LL A +  G   + E V   M++ G+ PD     +++  +
Sbjct: 234 SLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETF 293

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+L + EK+ E+L  ME      DIS+YN+L+  Y   G I    G+F+ +   R  P+ 
Sbjct: 294 GKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNA 353

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT++  L  Y     Y    E+F EM  +   PD GT  VLI         ++V TL   
Sbjct: 354 VTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHD 413

Query: 240 M 240
           M
Sbjct: 414 M 414



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 93/182 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G  P + S+ +LL AY+  G++    GV  QM ++   P+    + +LNLYG
Sbjct: 305 LLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYG 364

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+++ + E+   M+  +   D+ TYN+LI ++G GG+ +++  LF  +  + ++P++ 
Sbjct: 365 GHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMG 424

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A  +  L+    +I   M + G  P       +I A       E+   +  TM
Sbjct: 425 TYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTM 484

Query: 241 HK 242
           ++
Sbjct: 485 NE 486



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 11/235 (4%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           N F  +F  +     +  +  +F+ M+R +   P    + ++++   + G + K   +  
Sbjct: 107 NDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFE 166

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M   G+    F   +++N YGR GQ+E   E+L  M+K      I TYN +IN   RGG
Sbjct: 167 EMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGG 226

Query: 159 F-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
              E +  LF  +  + ++PD++T+ + L A + + L      +F  M + G  PD  T 
Sbjct: 227 LNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTY 286

Query: 218 KVLISACSSEDQIEQVTTLVRTMHKDMK----TALPIYFNLYGEKGVARSNLGQY 268
           + L+      +++E+V+ L++ M         ++  +    Y  KG  R  +G +
Sbjct: 287 RNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVF 341



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 5/204 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FEEM   G+  ++ S+  L+ +Y + G       ++ +M K  + P     N+++N   
Sbjct: 164 IFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCA 223

Query: 121 RLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           R G  +E +  +   M       DI TYN L+N     G  ++ E +F+++    + PD+
Sbjct: 224 RGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDI 283

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+ + +  + +     +  E+ +EM  +G  PD  +  VL+ A +S+  I     + R 
Sbjct: 284 TTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQ 343

Query: 240 MHKDM----KTALPIYFNLYGEKG 259
           M +           +  NLYG  G
Sbjct: 344 MQEARCVPNAVTYSMLLNLYGGHG 367



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 80/152 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +F  M  +G  PT++++  L+  +++ G   + E ++ +M +SG+  D    N 
Sbjct: 474 YEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNG 533

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + GQFE+  +    +EK  +  D  T+  ++++Y   G +++ E  F+ + A  
Sbjct: 534 VIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASG 593

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + P V+ +   +A Y+R   +    E+ +EM+
Sbjct: 594 ILPSVMCYCMMIAVYARSNRWDDAYEVLDEMV 625



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +   M   GI P+ K++  ++ AY +  +  +   + N M++ G KP     NS++
Sbjct: 441 DAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLI 500

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N++ R G +++ E ++  M +   A D  ++N +I  Y +GG  E+    +  L   R +
Sbjct: 501 NMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQ 560

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           PD  T+ + L+ Y    L     E F E+  +G  P
Sbjct: 561 PDERTFEAVLSVYCTAGLVDESEEQFREIRASGILP 596



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 89/200 (44%), Gaps = 9/200 (4%)

Query: 43  TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N+ + +F    YF +   +F +M    + P M ++  L+ A  K G     + ++  M
Sbjct: 390 TYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHM 449

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            + G+ P T     ++  YG+   +E+   +   M +      + TYN LIN++ RGG  
Sbjct: 450 DEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLY 509

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++ E +   +    +  D  ++   +  Y +   +   ++ + E+  A   PD  T + +
Sbjct: 510 KESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAV 569

Query: 221 ISA-CS------SEDQIEQV 233
           +S  C+      SE+Q  ++
Sbjct: 570 LSVYCTAGLVDESEEQFREI 589



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 71/165 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF +M+     P   ++ +LL  Y   G       +  +M  S  +PD    N ++ 
Sbjct: 337 AMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIE 396

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G  G F+++  +   M + +   ++ TY  LI   G+GG  E  + +   +  K + P
Sbjct: 397 VFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVP 456

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
               +T  + AY +   Y   L +F  M + G  P   T   LI+
Sbjct: 457 STKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLIN 501



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 77/178 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D   +F EMK     P + ++ +L+  + + G   +   + + M +  ++P+      
Sbjct: 369 YDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEG 428

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   G+ G  E  +++L  M++         Y  +I  YG+    E+   +F ++    
Sbjct: 429 LIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMG 488

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            KP V T+ S +  ++R  LY+    I  +M ++G   D  +   +I       Q E+
Sbjct: 489 SKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEE 546


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 95/188 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V +EM   G+ P   ++ LL+ AY++ G       ++ +M   G+KP ++V + 
Sbjct: 322 LKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 381

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G ++K   VL  M       D   YN++I+ +G+   +      F  +  + 
Sbjct: 382 ILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEG 441

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDVVTW + + A+ +   + R +E+FEEM ++ C P   T  ++I+    +++   V 
Sbjct: 442 IEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVE 501

Query: 235 TLVRTMHK 242
           T++  M +
Sbjct: 502 TMLSEMKE 509



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EMK  G+ P + ++  L+  Y ++G   +    I  M   GLKP   + ++++N Y 
Sbjct: 503 MLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYA 562

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  +    V+ AM      A     N L+N +G    + +   + Q +    L+PDV+
Sbjct: 563 QRGLADHALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVI 622

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+T+ + A  R + + +   I+EEMI +GC PD     +L SA
Sbjct: 623 TYTTLMKALIRIEQFDKVPVIYEEMITSGCAPDRKARAMLRSA 665



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 90/199 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AV  EM   G+ P    + +++  + K   +       N+M + G++PD    N+
Sbjct: 392 WQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNT 451

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ ++  E+   M + +     +TYNI+IN+ G       +E +   +  + 
Sbjct: 452 LIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQG 511

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+++T+T+ +  Y R   ++  +E  E M   G  P       L++A +     +   
Sbjct: 512 LVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHAL 571

Query: 235 TLVRTMHKDMKTALPIYFN 253
            +V+ M  D   A  +  N
Sbjct: 572 NVVKAMRADGLEASTVVLN 590



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 1/156 (0%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFE 126
           +G+TP   +   L++A    G VA+ E +  +   +G +KP T   N++L  Y ++G  +
Sbjct: 264 IGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLK 323

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             E+VL  M     A D +TY++L++ Y R G  E    L + + A  +KP    ++  L
Sbjct: 324 NAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 383

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           A +  +  +++   +  EM  +G  PD     V+I 
Sbjct: 384 AGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMID 419



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 3/217 (1%)

Query: 41  QHTPNLFVFIFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  Y    HA+  F  M+  GI P + +   L+ A+ K G   +   +  
Sbjct: 411 RHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFE 470

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +S   P T   N M+NL G   ++  +E +L+ M++     +I TY  L+++YGR G
Sbjct: 471 EMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSG 530

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             ++     + + A  LKP    + + + AY+++ L    L + + M   G         
Sbjct: 531 RFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN 590

Query: 219 VLISACSSEDQIEQVTTLVRTMHK-DMKTALPIYFNL 254
            L++A   + ++ +  ++++ M + D++  +  Y  L
Sbjct: 591 SLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTL 627



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 4/211 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  + +EM+  G+ P+      +L  +   G+  K   V+ +MH SG++PD    N 
Sbjct: 357 WESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNV 416

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ +G+        +    M +     D+ T+N LI+ + +GG  ++   LF+ +    
Sbjct: 417 MIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESN 476

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P   T+   +     ++ +     +  EM + G  P+  T   L+       + ++  
Sbjct: 477 CPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAI 536

Query: 235 TLVRTMHKDMKTALPIYF----NLYGEKGVA 261
             +  M  D     P  +    N Y ++G+A
Sbjct: 537 ECIEVMKADGLKPSPTMYHALVNAYAQRGLA 567



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 4/179 (2%)

Query: 69  GITPTMKSHMLLLTAYSKT---GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           G  P + S+  LL +   T    + A  E ++  + +S L+PD  + + +++ + R    
Sbjct: 192 GFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDLISAFARAALP 251

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLKPDVVTWTS 184
           +   ++L + +        +    LI+  G  G + + E LF +   A  +KP    + +
Sbjct: 252 DAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNA 311

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            L  Y +    +   ++ +EM D G  PD  T  +L+ A +   + E    L++ M  D
Sbjct: 312 LLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 370


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 14/221 (6%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+     S+Y         +A A+F E+K  G+ P   ++ +++  YSK G V +   
Sbjct: 471 APNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIK 530

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++++M K   +PD  VINS+++   + G+ E+  ++   ME+ + A  + TYNIL+   G
Sbjct: 531 LLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLG 590

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G I+K   LF+S+      P+ +T+ + L    +       L++F +M    C PD  
Sbjct: 591 KEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVL 650

Query: 216 TAKVLISACSSEDQIE-------QVTTLVRTMHKDMKTALP 249
           T   +I     ++QI+       Q+  L+R  H  + T LP
Sbjct: 651 TFNTIIHGFIKQNQIKNAIWLFHQMKKLLRPDHVTLCTLLP 691



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 88/174 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   FE+MK  GI P + +    L + ++ G + + + + N++  SGL PD+   N M+ 
Sbjct: 458 ALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMK 517

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++GQ ++  ++L+ M K     D+   N LI+   + G +E+   +F  +    L P
Sbjct: 518 CYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAP 577

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            VVT+   LA   ++   ++ +++FE M   GC P+  T   L+      D+++
Sbjct: 578 TVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVD 631



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 90/191 (47%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S +  +A  V+  M   G+ P++K+   L+ A  K  N+    G++ +M   GL+P+ + 
Sbjct: 207 SGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYT 266

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
               + + GR G+ ++   ++  M+      D+ TY +LI+       ++    LF  + 
Sbjct: 267 YTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMK 326

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +   KPD VT+ + L  +S      +  +I+ EM   G  PD  T  +L++A     +I 
Sbjct: 327 SSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRIN 386

Query: 232 QVTTLVRTMHK 242
           +   L+ TM K
Sbjct: 387 EAFDLLDTMRK 397



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%)

Query: 62   FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            F+ M + GI P +KS+ +L+      G V        ++ ++GL PD    N M+N  GR
Sbjct: 953  FKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGR 1012

Query: 122  LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
              + E+   +   M+      D+ TYN LI   G  G IE+   +++ L    LKP+V T
Sbjct: 1013 SQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFT 1072

Query: 182  WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            + + +  Y+          I+++M+  GC P+ GT
Sbjct: 1073 YNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGT 1107



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 87/189 (46%), Gaps = 1/189 (0%)

Query: 56  SDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           S A  VF +  K LG+ PT+K + LL+  + +  NV     +  +M  +G  PDTF  NS
Sbjct: 771 SVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNS 830

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ G+  ++ ++   M       +  TYN++I+   +   ++K   L+ +L +  
Sbjct: 831 LIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGD 890

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P   T+   +    +        E+F+ M+  GC P+     +L++       ++   
Sbjct: 891 FSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTAC 950

Query: 235 TLVRTMHKD 243
              + M K+
Sbjct: 951 EFFKRMVKE 959



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 7/186 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN++ +   I          +A+ + + M   G  P + ++ +L+ A      +     +
Sbjct: 262 PNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCL 321

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M  S  KPD     ++L+ +   G  +K+E++ T ME   YA D+ T+ IL+N   +
Sbjct: 322 FTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCK 381

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G I +   L  ++  + + P++ T+ + ++   R       L++F  M   G  P   T
Sbjct: 382 AGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYT 441

Query: 217 AKVLIS 222
             +LI 
Sbjct: 442 YILLID 447



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 94/208 (45%), Gaps = 7/208 (3%)

Query: 42  HTPNLFVFIFSI-YFSD------AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P+   ++  +  FSD         ++ EM+  G  P + +  +L+ A  K G + +  
Sbjct: 330 HKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAF 389

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            +++ M K G+ P+    N++++   R  + +   ++ + ME         TY +LI+ +
Sbjct: 390 DLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYH 449

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           G+ G   K    F+ + A+ + P++V   + L + +          +F E+  +G  PD 
Sbjct: 450 GKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDS 509

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHK 242
            T  +++   S   Q+++   L+  M K
Sbjct: 510 VTYNMMMKCYSKVGQVDEAIKLLSEMSK 537



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 80/182 (43%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            + EEM+ +G+ P + ++ + +    + G + +   ++ +M   G  PD      +++  
Sbjct: 250 GLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDAL 309

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               + +    + T M+  S+  D  TY  L++ +   G ++K+E ++  + A    PDV
Sbjct: 310 CTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDV 369

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+T  + A  +        ++ + M   G  P+  T   LIS     ++++    L   
Sbjct: 370 VTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSN 429

Query: 240 MH 241
           M 
Sbjct: 430 ME 431



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%)

Query: 71   TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            +PT  +   L+    K+G +     + + M   G +P++ + N ++N YG+LG  +   E
Sbjct: 892  SPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACE 951

Query: 131  VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
                M K     D+ +Y IL++I    G ++     F+ L    L PD+V +   +    
Sbjct: 952  FFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLG 1011

Query: 191  RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            R +     L +F EM + G  PD  T   LI
Sbjct: 1012 RSQRTEEALSLFHEMQNRGIVPDLYTYNSLI 1042



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 73/167 (43%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              DAH +F+ M   G  P    + +L+  Y K G+V        +M K G++PD      
Sbjct: 911  LDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTI 970

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++++    G+ +        +++     D+  YN++IN  GR    E+   LF  +  + 
Sbjct: 971  LVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRG 1030

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            + PD+ T+ S +       +     +I+EE+   G  P+  T   LI
Sbjct: 1031 IVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALI 1077



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 7/172 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F +MK     P   +++ LL  +S  G++ K E +  +M   G  PD      
Sbjct: 315 LDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTI 374

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G+  +  ++L  M K     ++ TYN LI+   R   ++    LF ++ +  
Sbjct: 375 LVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLG 434

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           ++P   T+   +  + +     + LE FE+M   G  P+       I AC++
Sbjct: 435 VEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPN-------IVACNA 479



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 8/212 (3%)

Query: 32  FMLINFLLLQHTPNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           F L+   +++   + ++ IF   F       A +  E+M+  G      S+  L+    +
Sbjct: 147 FDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQ 206

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
           +G   +   V  +M   GLKP     ++++   G+    + +  +L  ME      +I T
Sbjct: 207 SGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYT 266

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           Y I I + GR G I++   + + +      PDVVT+T  + A    +     + +F +M 
Sbjct: 267 YTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMK 326

Query: 207 DAGCYPDGGTAKVLI---SACSSEDQIEQVTT 235
            +   PD  T   L+   S C   D++E++ T
Sbjct: 327 SSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWT 358



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 35/219 (15%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM-- 115
            A  +FEEMK  G  P   ++  L+ A+ K+G + +   + ++M   G KP+T   N +  
Sbjct: 809  AWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVIS 868

Query: 116  -----------LNLYGRL----------------------GQFEKMEEVLTAMEKGSYAA 142
                       ++LY  L                      G+ +   E+   M       
Sbjct: 869  NLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRP 928

Query: 143  DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
            + + YNIL+N YG+ G ++     F+ +  + ++PD+ ++T  +            L  F
Sbjct: 929  NSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYF 988

Query: 203  EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            E++  AG  PD     ++I+      + E+  +L   M 
Sbjct: 989  EKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQ 1027



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 82/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   VF+ M+R  I   + +++++  +    G + +    + +M ++G   + +  N ++
Sbjct: 142 DMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLI 201

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  ++  EV   M        + T++ L+   G+   I+ + GL + + +  L+
Sbjct: 202 HFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLR 261

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++ T+T  +    R         I + M D GC PD  T  VLI A  +  +++    L
Sbjct: 262 PNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCL 321

Query: 237 VRTM 240
              M
Sbjct: 322 FTKM 325



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 75/178 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  + + M++ G+ P + ++  L++   +   +     + + M   G++P  +    
Sbjct: 385 INEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYIL 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ G   K  E    M+    A +I   N  +      G + + + +F  L +  
Sbjct: 445 LIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSG 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           L PD VT+   +  YS+       +++  EM    C PD      LI       ++E+
Sbjct: 505 LAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEE 562



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 61/128 (47%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
             DA   FE++K+ G+ P + ++ L++    ++    +   + ++M   G+ PD +  NS+
Sbjct: 982  DDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSL 1041

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            +   G +G  E+  ++   ++      ++ TYN LI  Y   G  E   G+++ +     
Sbjct: 1042 ILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGC 1101

Query: 176  KPDVVTWT 183
             P+  T+ 
Sbjct: 1102 DPNTGTFA 1109


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 83/158 (52%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V+E+M   G+ P+  ++  L++AY K G V K   +   M + G + +    +S+++
Sbjct: 400 ALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLIS 459

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G++E   E+ + M K +   ++ T+N LI     GG  EK   LF+ +  +  KP
Sbjct: 460 ACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKP 519

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           D +T+   + AY R   +RR L+ FE+M   GC+PD  
Sbjct: 520 DSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAA 557



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 96/190 (50%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  GI   + ++  L+    K   +   + V  QM + G  P+    N ++++Y +  
Sbjct: 301 EMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRC 360

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           Q+E+  +VL  +EK +  A++ TYN +I+   + G  E+   +++ + A  +KP   T+T
Sbjct: 361 QWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYT 420

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + ++AY +K    + LEIF +MI  GC  +  T   LISAC    + E    L   MHK+
Sbjct: 421 ALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKE 480

Query: 244 MKTALPIYFN 253
                 + FN
Sbjct: 481 NCKPNVVTFN 490



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 7/188 (3%)

Query: 43  TPNLF-------VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PNL        V++    + +A  V + +++  I   ++++  +++A +K+G   +   
Sbjct: 343 SPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALK 402

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V  +M  +G+KP      ++++ YG+ GQ EK  E+   M +     ++ TY+ LI+   
Sbjct: 403 VYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACE 462

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  E    LF  +  +  KP+VVT+ S +AA S    + +  E+FE+M   GC PD  
Sbjct: 463 KAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSI 522

Query: 216 TAKVLISA 223
           T   LI+A
Sbjct: 523 TYCGLITA 530



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 91/184 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V+++M   G +P + ++ +L+  Y K     +   V++ + K  ++ +    N++++
Sbjct: 330 AQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVIS 389

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + GQ E+  +V   M         +TY  LI+ YG+ G +EK   +F+ +  +  + 
Sbjct: 390 ACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCER 449

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+T++S ++A  +   +   LE+F +M    C P+  T   LI+ACS     E+ + L 
Sbjct: 450 NVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELF 509

Query: 238 RTMH 241
             M 
Sbjct: 510 EQMQ 513



 Score = 44.7 bits (104), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 45/103 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F +M +    P + +   L+ A S  G+  K   +  QM   G KPD+     ++ 
Sbjct: 470 ALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLIT 529

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            Y R GQ+ +  +    M+      D + +N L+ +  + G +
Sbjct: 530 AYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSGVL 572



 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++  A  +FE+M+  G  P   ++  L+TAY + G   +      QM   G  PD  V N
Sbjct: 501 HWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFN 560

Query: 114 SMLNLYGRLG 123
           S++ +  + G
Sbjct: 561 SLMEVLWQSG 570


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   GI   +  + ++ +A  K   V+    + ++M  +G+ PD F  N M++ YGR+G 
Sbjct: 419 MPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGL 478

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +K  E+   ME  S   D+ TYN LIN  G+ G +++   LF+ +  K   PDV T++ 
Sbjct: 479 VDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSI 538

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  + +         +F+EMI  GC P+  T  +L+       + E+   L  TM +
Sbjct: 539 LIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 596



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F++MK  GI P + ++ +++++Y + G V K   +   M  S  KPD    NS++N  G
Sbjct: 450 LFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLG 509

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  ++   +   M++  Y  D+ TY+ILI  +G+   +E    LF  + ++   P++V
Sbjct: 510 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 569

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           T+   L    R+       +++E M   G  PD  T  +L
Sbjct: 570 TYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 609



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH VF  M          + + +L          +   +++ M + G+  D  + N +
Sbjct: 375 SEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMV 434

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            +  G+L Q   +  +   M+      D+ TYNI+I+ YGR G ++K   LF+ + A   
Sbjct: 435 FSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSC 494

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDVVT+ S +    +         +F+EM + G  PD  T  +LI      +++E   +
Sbjct: 495 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 554

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L   M  +  T   + +N+
Sbjct: 555 LFDEMISEGCTPNIVTYNI 573



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 89/191 (46%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E   + G+  +  ++  ++ A+ ++  V+K   V  +M + G K D F  N +L+   +
Sbjct: 174 LELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAK 233

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++  +V   M++     D  TY ILI + G+ G   K    F  + +K    +++ 
Sbjct: 234 AGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIA 293

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + + A  + K+  + + +  +M++  C P+  T  + +   ++E Q+ ++  ++    
Sbjct: 294 FNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICS 353

Query: 242 KDMKTALPIYF 252
           + M  ++  Y 
Sbjct: 354 RFMNRSIYSYL 364



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 10/206 (4%)

Query: 44  PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS-------KTGNVAKCEGV 96
           PN F +  ++   D  A   ++ RL     + S  +  + YS       K+G+ ++   V
Sbjct: 324 PNQFTYSITL---DILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNV 380

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M  S  K D     SML +     +  +  ++L  M +     D+  YN++ +  G+
Sbjct: 381 FCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGK 440

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +  +  LF  +    + PDV T+   +++Y R  L  +  E+FE M  + C PD  T
Sbjct: 441 LKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVT 500

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK 242
              LI+       +++   L + M +
Sbjct: 501 YNSLINCLGKHGDLDEAHMLFKEMQE 526



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 80/185 (43%), Gaps = 3/185 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +  +M+R G+   + +  LL+        + +C   +    K GL+   +    +
Sbjct: 136 SEALRLVADMERDGVAGNISTINLLVGMGGGGVEMERC---LELASKWGLRLSGYTYKCI 192

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  + R  +  K  +V   M +  Y  DI  YN+L++   + G +++   +F+ +  K  
Sbjct: 193 VQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHC 252

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD  T+T  +    +     + L  F+EM+  GC  +      +I A      +++V  
Sbjct: 253 VPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIF 312

Query: 236 LVRTM 240
           ++  M
Sbjct: 313 VLSKM 317



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 50/102 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +AH +F+EM+  G  P + ++ +L+  + K+  V     + ++M   G  P+    N 
Sbjct: 514 LDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNI 573

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           +L+   R G+ E+  ++   M++     D  TY+IL  +  R
Sbjct: 574 LLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESR 615


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 94/186 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM    I P + ++  ++  Y+K G +     + N+M   G+  D    N++L+
Sbjct: 237 AFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLS 296

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y +LG+FE+  +V   ME      D+ TYN L+  YG+    + +  +F+ + A+ + P
Sbjct: 297 IYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSP 356

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+++ +  YS+  LYR  +++F E   AG   D      LI A      +E   +L+
Sbjct: 357 NLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLL 416

Query: 238 RTMHKD 243
             M K+
Sbjct: 417 DEMTKE 422



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 86/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F EMK LGI+    S+  LL+ Y+K G   +   V  +M  SG++ D    N+
Sbjct: 269 LDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNA 328

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  YG+  +++ + +V   M+    + ++ TY+ LI++Y +GG   +   +F+      
Sbjct: 329 LLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAG 388

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LK DVV +++ + A  +  L    + + +EM   G  P+  T   +I A
Sbjct: 389 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 437



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++M++  GRLG+ E  + V  A     Y   +  ++ +I+ YGR G+  +   +F S+  
Sbjct: 81  SAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKD 140

Query: 173 KRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             LKP++VT+ + + A  +  + ++R LEIF+EM+  G  PD  T   L++ CS     E
Sbjct: 141 YGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWE 200

Query: 232 QVTTL 236
              +L
Sbjct: 201 AARSL 205



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 90/194 (46%), Gaps = 4/194 (2%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           + F     +F+EM R G+ P   +   LL   SK G       +  +M   G+  D F  
Sbjct: 162 VEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTY 221

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++L+   + GQ +   E+++ M   +   ++ TY+ +I+ Y + G ++    LF  +  
Sbjct: 222 NTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKF 281

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             +  D V++ + L+ Y++   +   +++  EM ++G   D  T   L+     + + + 
Sbjct: 282 LGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYD- 340

Query: 233 VTTLVRTMHKDMKT 246
              +VR + ++MK 
Sbjct: 341 ---VVRKVFEEMKA 351



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+     G   T+ +   +++AY ++G   +   +   M   GLKP+    N++++
Sbjct: 96  AKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVID 155

Query: 118 LYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             G+ G +F+++ E+   M +     D  T+N L+ +  +GG  E    L   +  + + 
Sbjct: 156 ACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGID 215

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+ T+ + L A  +        EI  EM      P+  T   +I   +   +++    L
Sbjct: 216 QDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNL 275

Query: 237 VRTM 240
              M
Sbjct: 276 FNEM 279



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 36/198 (18%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PNL  +  +  +Y     + +A  VF E K+ G+   +  +  L+ A  K G V     
Sbjct: 355 SPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVS 414

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGR----------LGQFEKME-EVL--TAMEKG--SY 140
           ++++M K G++P+    NS+++ +GR           GQ  +++ + L  +A+EK   S 
Sbjct: 415 LLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQIDSLSSSAVEKATKSL 474

Query: 141 AADISTYNILINIYGR-----------GGFIEKM--EGLFQSLPAKRLKPDVVTWTSRLA 187
            AD    N +I I+G+            G  E M   G+F  +    +KP+VVT+++ L 
Sbjct: 475 VADRED-NRIIKIFGQLAAEKAGQAKNSGGQEMMCILGVFHKMHELEIKPNVVTFSAILN 533

Query: 188 AYSRKKLYRRCLEIFEEM 205
           A SR   +     + EE+
Sbjct: 534 ACSRCNSFEEASMLLEEL 551



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++   + G V   + V       G     +  +++++ YGR G   +  ++  +M+   
Sbjct: 83  MISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYG 142

Query: 140 YAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
              ++ TYN +I+  G+GG   +++  +F  +    ++PD +T+ S LA  S+  L+   
Sbjct: 143 LKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAA 202

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             +  EM++ G   D  T   L+ A     Q++    ++  M
Sbjct: 203 RSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEM 244


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   GI   +  + ++ +A  K   V+    + ++M  +G+ PD F  N M++ YGR+G 
Sbjct: 361 MPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGL 420

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +K  E+   ME  S   D+ TYN LIN  G+ G +++   LF+ +  K   PDV T++ 
Sbjct: 421 VDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSI 480

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  + +         +F+EMI  GC P+  T  +L+       + E+   L  TM +
Sbjct: 481 LIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 538



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F++MK  GI P + ++ +++++Y + G V K   +   M  S  KPD    NS++N  G
Sbjct: 392 LFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLG 451

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  ++   +   M++  Y  D+ TY+ILI  +G+   +E    LF  + ++   P++V
Sbjct: 452 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 511

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           T+   L    R+       +++E M   G  PD  T  +L
Sbjct: 512 TYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH VF  M          + + +L          +   +++ M + G+  D  + N +
Sbjct: 317 SEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMV 376

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            +  G+L Q   +  +   M+      D+ TYNI+I+ YGR G ++K   LF+ + A   
Sbjct: 377 FSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSC 436

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDVVT+ S +    +         +F+EM + G  PD  T  +LI      +++E   +
Sbjct: 437 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 496

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L   M  +  T   + +N+
Sbjct: 497 LFDEMISEGCTPNIVTYNI 515



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 89/191 (46%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E   + G+  +  ++  ++ A+ ++  V+K   V  +M + G K D F  N +L+   +
Sbjct: 116 LELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAK 175

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++  +V   M++     D  TY ILI + G+ G   K    F  + +K    +++ 
Sbjct: 176 AGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIA 235

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + + A  + K+  + + +  +M++  C P+  T  + +   ++E Q+ ++  ++    
Sbjct: 236 FNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICS 295

Query: 242 KDMKTALPIYF 252
           + M  ++  Y 
Sbjct: 296 RFMNRSIYSYL 306



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 10/206 (4%)

Query: 44  PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS-------KTGNVAKCEGV 96
           PN F +  ++   D  A   ++ RL     + S  +  + YS       K+G+ ++   V
Sbjct: 266 PNQFTYSITL---DILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNV 322

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M  S  K D     SML +     +  +  ++L  M +     D+  YN++ +  G+
Sbjct: 323 FCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGK 382

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +  +  LF  +    + PDV T+   +++Y R  L  +  E+FE M  + C PD  T
Sbjct: 383 LKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVT 442

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK 242
              LI+       +++   L + M +
Sbjct: 443 YNSLINCLGKHGDLDEAHMLFKEMQE 468



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 80/185 (43%), Gaps = 3/185 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +  +M+R G+   + +  LL+        + +C   +    K GL+   +    +
Sbjct: 78  SEALRLVADMERDGVAGNISTINLLVGMGGGGVEMERC---LELASKWGLRLSGYTYKCI 134

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  + R  +  K  +V   M +  Y  DI  YN+L++   + G +++   +F+ +  K  
Sbjct: 135 VQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHC 194

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD  T+T  +    +     + L  F+EM+  GC  +      +I A      +++V  
Sbjct: 195 VPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIF 254

Query: 236 LVRTM 240
           ++  M
Sbjct: 255 VLSKM 259



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 50/102 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +AH +F+EM+  G  P + ++ +L+  + K+  V     + ++M   G  P+    N 
Sbjct: 456 LDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNI 515

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           +L+   R G+ E+  ++   M++     D  TY+IL  +  R
Sbjct: 516 LLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESR 557


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   GI   +  + ++ +A  K   V+    + ++M  +G+ PD F  N M++ YGR+G 
Sbjct: 361 MPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGL 420

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +K  E+   ME  S   D+ TYN LIN  G+ G +++   LF+ +  K   PDV T++ 
Sbjct: 421 VDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSI 480

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  + +         +F+EMI  GC P+  T  +L+       + E+   L  TM +
Sbjct: 481 LIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 538



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F++MK  GI P + ++ +++++Y + G V K   +   M  S  KPD    NS++N  G
Sbjct: 392 LFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLG 451

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  ++   +   M++  Y  D+ TY+ILI  +G+   +E    LF  + ++   P++V
Sbjct: 452 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 511

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           T+   L    R+       +++E M   G  PD  T  +L
Sbjct: 512 TYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH VF  M          + + +L          +   +++ M + G+  D  + N +
Sbjct: 317 SEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMV 376

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            +  G+L Q   +  +   M+      D+ TYNI+I+ YGR G ++K   LF+ + A   
Sbjct: 377 FSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSC 436

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDVVT+ S +    +         +F+EM + G  PD  T  +LI      +++E   +
Sbjct: 437 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 496

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L   M  +  T   + +N+
Sbjct: 497 LFDEMISEGCTPNIVTYNI 515



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 89/191 (46%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E   + G+  +  ++  ++ A+ ++  V+K   V  +M + G K D F  N +L+   +
Sbjct: 116 LELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAK 175

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++  +V   M++     D  TY ILI + G+ G   K    F  + +K    +++ 
Sbjct: 176 AGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIA 235

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + + A  + K+  + + +  +M++  C P+  T  + +   ++E Q+ ++  ++    
Sbjct: 236 FNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICS 295

Query: 242 KDMKTALPIYF 252
           + M  ++  Y 
Sbjct: 296 RFMNRSIYSYL 306



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 10/206 (4%)

Query: 44  PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS-------KTGNVAKCEGV 96
           PN F +  ++   D  A   ++ RL     + S  +  + YS       K+G+ ++   V
Sbjct: 266 PNQFTYSITL---DILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNV 322

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M  S  K D     SML +     +  +  ++L  M +     D+  YN++ +  G+
Sbjct: 323 FCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGK 382

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +  +  LF  +    + PDV T+   +++Y R  L  +  E+FE M  + C PD  T
Sbjct: 383 LKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVT 442

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK 242
              LI+       +++   L + M +
Sbjct: 443 YNSLINCLGKHGDLDEAHMLFKEMQE 468



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 3/185 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +  +M+R G+   + +  LL+        V +C   +    K GL+   +    +
Sbjct: 78  SEALRLVADMERDGVAGNISTINLLVGMGGGGVEVERC---LELASKWGLRLSGYTYKCI 134

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  + R  +  K  +V   M +  Y  DI  YN+L++   + G +++   +F+ +  K  
Sbjct: 135 VQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHC 194

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD  T+T  +    +     + L  F+EM+  GC  +      +I A      +++V  
Sbjct: 195 VPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIF 254

Query: 236 LVRTM 240
           ++  M
Sbjct: 255 VLSKM 259



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 50/102 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +AH +F+EM+  G  P + ++ +L+  + K+  V     + ++M   G  P+    N 
Sbjct: 456 LDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNI 515

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           +L+   R G+ E+  ++   M++     D  TY+IL  +  R
Sbjct: 516 LLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESR 557


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 10/211 (4%)

Query: 41  QHTPNLFVFIFSI------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           +  P++F +   I         +A  +F+E ++ G+   + ++  L+ A+ K G  AK  
Sbjct: 296 ESVPDVFTYNLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKAL 355

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            V   M K+G  PDT V N +++  G+ G+ ++  E+L  M +     D  TYNI+I++ 
Sbjct: 356 EVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVL 415

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD- 213
              G  EK    F  +  ++  PDVVT+ + L    + +      ++F+EM    C PD 
Sbjct: 416 SSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDL 475

Query: 214 ---GGTAKVLISACSSEDQIEQVTTLVRTMH 241
              G     L  A   ED +EQ   LV+  H
Sbjct: 476 TTFGTLIDTLAKAGRMEDALEQSARLVKMGH 506



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 9/217 (4%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
            T N+ + + S    +  A++ F  MKR   +P + ++  LL    K     +   + ++
Sbjct: 406 RTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDE 465

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  +   PD     ++++   + G+ E   E    + K  +A +   YN LI+ + R G 
Sbjct: 466 MQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQ 525

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           ++K   LFQ +      PD +T+T  +  +SR+      +E+ +EM+  G  P   T  V
Sbjct: 526 VDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNV 585

Query: 220 LISACSSEDQIEQVTTLVRTM-----HKDMKT--ALP 249
           LI + S   Q+E   TL + M     + DM+T  ALP
Sbjct: 586 LIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALP 622



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 5/199 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  + E+M R GI P  +++ +++   S  G   K       M +    PD    N++
Sbjct: 387 DEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTL 446

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LN   +L + ++  ++   M+      D++T+  LI+   + G +E  + L QS    ++
Sbjct: 447 LNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRME--DALEQSARLVKM 504

Query: 176 --KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P+   + + ++ + R     +  E+F++MI+  C+PD  T  +L+   S        
Sbjct: 505 GHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMA 564

Query: 234 TTLVRTMHKDMKT-ALPIY 251
             L++ M ++  T AL  Y
Sbjct: 565 MELLQEMVREGHTPALATY 583



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 89/240 (37%), Gaps = 41/240 (17%)

Query: 44  PNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN   F   + F       +DA AVF+EM   G+   +     L+    + G + +   +
Sbjct: 159 PNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRL 218

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++ M       D F    ++N + R GQ  ++   +        A     YN +I  + R
Sbjct: 219 LHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIR 278

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR-------------------- 196
            G + +   LF+S   K   PDV T+   +A    K+L                      
Sbjct: 279 CGRLAEATQLFESTMTKESVPDVFTYNLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTY 338

Query: 197 --------------RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
                         + LE+F  M  AGC PD     VLIS    + ++++   L+  M++
Sbjct: 339 SYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNR 398



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 2/177 (1%)

Query: 61  VFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +F  +K+ G   P   S   L+    K         V  +M  +GLK D  V N++++  
Sbjct: 147 MFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCT 206

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            RLG   +   +L  M   + A D  TY IL+N + R G + ++    +           
Sbjct: 207 CRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSA 266

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           V +   +  + R        ++FE  +     PD  T  +LI+ C S+ Q+E+  TL
Sbjct: 267 VNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIALCKSK-QLEEALTL 322



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 10/211 (4%)

Query: 60  AVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           A F E+ R  G   +  ++  ++  + + G +A+   +          PD F  N ++ L
Sbjct: 251 ASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIAL 310

Query: 119 YGRLGQFEKMEEVLT---AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
                + +++EE LT     E+G    D+ TY+ L++ +G+ G   K   +F ++     
Sbjct: 311 C----KSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGC 366

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD V +   ++   ++      LE+ E+M   G  PD  T  ++I   SS  + E+  +
Sbjct: 367 MPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYS 426

Query: 236 LVRTMHKDMKTALPIYFN--LYGEKGVARSN 264
               M +   +   + +N  L G K + R++
Sbjct: 427 FFGMMKRRKHSPDVVTYNTLLNGLKKLRRTD 457



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 3/163 (1%)

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKG 138
           + A+ + G++    G+++ M +    +PDT    + ++    + + E+   +   M E  
Sbjct: 60  IQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETC 119

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTSRLAAYSRKKLYRR 197
             A D+  YN LI  Y + G  ++   +F+ L  +   KP+ V++ + +    +      
Sbjct: 120 DCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATD 179

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            L +F+EM+ AG   D      LI        + Q   L+  M
Sbjct: 180 ALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHM 222


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 43  TPNLFVF--IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP++  +  + S Y  D     A  + +EM+  G+ P + ++  L++   + G +     
Sbjct: 323 TPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALA 382

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
             ++M ++G  P+    N+++ ++G  G+F +M  V   +    Y  D+ T+N L+ ++G
Sbjct: 383 TYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFG 442

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G   ++ G+F+ +      P+  T+ S +++YSR  L+ + +EI++ MI+AG YPD  
Sbjct: 443 QNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDIS 502

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
           T   ++SA +   +  Q   L   M 
Sbjct: 503 TYNAVLSALARGGRWVQAEKLFAEME 528



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 2/185 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V ++M+  G TP++ ++  L++AY K G + +   +  +M   G+KPD     +++
Sbjct: 309 EAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLI 368

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRL 175
           +   R+G+ +      + M +   + ++ TYN LI ++G RG F E M  +F  L +   
Sbjct: 369 SGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMI-VFDDLRSAGY 427

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDVVTW + LA + +  L      +F+EM  AG  P+  T   LIS+ S     +Q   
Sbjct: 428 VPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAME 487

Query: 236 LVRTM 240
           + + M
Sbjct: 488 IYKRM 492



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 3/182 (1%)

Query: 43  TPNLFVFIFS---IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           T N+ + ++S   + + +   + + MK  GI     ++  L++   + G   +   + ++
Sbjct: 222 TYNVVLHVYSKMSVPWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDE 281

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  +G +PD    NS+L++YG+  + E+   VL  ME       + TYN LI+ Y + G 
Sbjct: 282 MKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGL 341

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E+   L Q +  + +KPDVVT+T+ ++   R       L  + EM+  GC P+  T   
Sbjct: 342 LEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNA 401

Query: 220 LI 221
           LI
Sbjct: 402 LI 403



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+    F+E++R   +  +     +++ Y K   V K E V+  M ++ +       NS
Sbjct: 587 LSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNS 646

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y RLG  EK E +LT ++      D  +YN +I  YGR G +++   LF  +    
Sbjct: 647 LMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 706

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           +KPD+VT+   + +Y    ++   +++   ++  GC P+  T
Sbjct: 707 VKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERT 748



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   +K  ++++ E    ++ +     D  V+N+M+++YG+    +K+EEVLT M++ S
Sbjct: 577 LVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENS 636

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                +TYN L+++Y R G  EK E +   + +  ++PD  ++ + + AY RK   +   
Sbjct: 637 INHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEAS 696

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
            +F EM  +G  PD  T  + I +  +    E+   LVR
Sbjct: 697 RLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVR 735



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 4/186 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV-INQMHKSGLKPDTFVIN 113
           F DA AVF  M   G+ P + ++ ++L  YSK     K   V ++ M + G++ D +  N
Sbjct: 201 FRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVLVDSMKEDGIELDRYTYN 260

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   R G + +  ++   M+   +  D  T+N L+++YG+    E+  G+ + +   
Sbjct: 261 TLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENA 320

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P VVT+ S ++AY +  L    LE+ +EM   G  PD  T   LIS     D+I ++
Sbjct: 321 GCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGL---DRIGKI 377

Query: 234 TTLVRT 239
              + T
Sbjct: 378 DAALAT 383



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++   VF++++  G  P + +   LL  + + G  ++  GV  +M K+G  P+     S
Sbjct: 412 FTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 471

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++  E+   M +     DISTYN +++   RGG   + E LF  +  + 
Sbjct: 472 LISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRD 531

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            KPD ++++S L AY+  K   +   + E++      P     K L+
Sbjct: 532 CKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLV 578



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 90/179 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A + EM R G +P + ++  L+  +   G   +   V + +  +G  PD    N++L 
Sbjct: 380 ALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLA 439

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M+K  Y  +  TY  LI+ Y R G  ++   +++ +    + P
Sbjct: 440 VFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYP 499

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           D+ T+ + L+A +R   + +  ++F EM D  C PD  +   L+ A ++  +++++  L
Sbjct: 500 DISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKAL 558



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 2/186 (1%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG-QFEKME 129
            P   ++  L++ +S+ G       V  +M   G++P     N +L++Y ++   ++++ 
Sbjct: 182 APDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVV 241

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            ++ +M++     D  TYN LI+   R G   +   +F  + A   +PD VT+ S L  Y
Sbjct: 242 VLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVY 301

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KDMKTAL 248
            + + +   + + ++M +AGC P   T   LISA   +  +E+   L + M  + MK  +
Sbjct: 302 GKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDV 361

Query: 249 PIYFNL 254
             Y  L
Sbjct: 362 VTYTTL 367



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 85/183 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+     P   S+  LL AY+    + K + +   ++   ++P  +++ +++ 
Sbjct: 520 AEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVL 579

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +  ++    + E+    + +   + DI+  N +++IYG+   ++K+E +   +    +  
Sbjct: 580 VNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINH 639

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
              T+ S +  YSR     +C  I  E+  +G  PD  +   +I A   + Q+++ + L 
Sbjct: 640 SAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLF 699

Query: 238 RTM 240
             M
Sbjct: 700 SEM 702


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 103/198 (52%), Gaps = 5/198 (2%)

Query: 50  IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + S Y  D     A A+ +EM+  G+ P + ++  L++   + G +       ++M ++G
Sbjct: 301 LISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNG 360

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            KP+    N+++ ++G  G+F +M  V        +  DI T+N L+ ++G+ G   ++ 
Sbjct: 361 CKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVS 420

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           G+F+ +      P+  T+ S +++YSR  L+   ++I++ M++AG YPD  T   ++SA 
Sbjct: 421 GVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSAL 480

Query: 225 SSEDQIEQVTTLVRTMHK 242
           +   + EQ   L   M +
Sbjct: 481 ARGGRWEQAEKLFAEMEE 498



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 3/182 (1%)

Query: 43  TPNLFVFIFS---IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           T N+ + ++S   + + +   +   MK  G+ P   ++  L++   +     +   V ++
Sbjct: 191 TYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDE 250

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  SG +PD    NS+L++YG+  + ++  EV+  ME+      + TYN LI+ Y + G 
Sbjct: 251 MKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGL 310

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E+   L Q +  K +KPDVVT+T+ ++   R       +  ++EM+  GC P+  T   
Sbjct: 311 LEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNA 370

Query: 220 LI 221
           LI
Sbjct: 371 LI 372



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A   F E+++   +  +     +++ Y K   V K E +++ M +S +       NS
Sbjct: 556 LAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNS 615

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y RLG  EK E +LT ++      D  +YN +I  YGR G +++   LF  +    
Sbjct: 616 LMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 675

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           LKPDVVT+   + +Y    ++   +E+   M+  GC P+  T
Sbjct: 676 LKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERT 717



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 2/185 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG-QFEKMEE 130
           P   ++  L++A+S+ G       V  +M  SG++P     N +L++Y ++   ++++ E
Sbjct: 152 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 211

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           ++ +M++   A D  TYN LI+   R    ++   +F  + A   +PD VT+ S L  Y 
Sbjct: 212 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 271

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KDMKTALP 249
           + + +   +E+ +EM   GC P   T   LIS+   +  +EQ   L + M  K MK  + 
Sbjct: 272 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVV 331

Query: 250 IYFNL 254
            Y  L
Sbjct: 332 TYTTL 336



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 84/161 (52%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   SK  N+A+ E    ++ +     D  V+N+M+++YG+     K+E++L+ M++ +
Sbjct: 546 LVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESA 605

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                +TYN L+++Y R G  EK E +   + +  ++PD  ++ + + AY RK   +   
Sbjct: 606 INLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEAS 665

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +F EM  +G  PD  T  + + +  S    E+   LVR M
Sbjct: 666 RLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYM 706



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 81/167 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  AVF+E +  G  P + +   LL  + + G  ++  GV  +M K+G  P+     S
Sbjct: 381 FPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 440

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F+   ++   M +     D+STYN +++   RGG  E+ E LF  +  + 
Sbjct: 441 LISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERD 500

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            KPD  +++S L AY+  K   +   + +++      P     K L+
Sbjct: 501 CKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 547



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 1/178 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
           F DA AVF  M   G+ P + ++ ++L  YSK     K    ++  M + G+ PD +  N
Sbjct: 170 FRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYN 229

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   R   +++  +V   M+   +  D  T+N L+++YG+    ++   + Q +   
Sbjct: 230 TLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERV 289

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              P VVT+ S +++Y +  L  + + + +EM   G  PD  T   LIS      +I+
Sbjct: 290 GCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 347



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 90/182 (49%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           ++EM R G  P + ++  L+  +   G   +   V ++   +G  PD    N++L ++G+
Sbjct: 353 YDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQ 412

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G   ++  V   M+K  Y  +  TY  LI+ Y R G  +    +++ +    + PDV T
Sbjct: 413 NGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVST 472

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + L+A +R   + +  ++F EM +  C PD  +   L+ A ++  +++++  L   ++
Sbjct: 473 YNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIY 532

Query: 242 KD 243
            +
Sbjct: 533 SE 534



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           MK   I  +  ++  L+  YS+ G+  KCE ++ ++  SG++PD +  N+++  YGR GQ
Sbjct: 601 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 660

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            ++   + + M+      D+ TYNI +  Y      E+   L + +  +  KP+  T+ S
Sbjct: 661 MKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNS 720

Query: 185 RLAAYSR 191
            +  Y R
Sbjct: 721 IVEGYCR 727



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 86/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +F EM+     P   S+  LL AY+    + K + + + ++   ++P  +++ +
Sbjct: 486 WEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKT 545

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +  ++    + E+    + +   + DI+  N +++IYG+   + K+E +   +    
Sbjct: 546 LVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESA 605

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +     T+ S +  YSR     +C  I  E+  +G  PD  +   +I A   + Q+++ +
Sbjct: 606 INLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEAS 665

Query: 235 TLVRTM 240
            L   M
Sbjct: 666 RLFSEM 671



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  E+K  G+ P   S+  ++ AY + G + +   + ++M  SGLKPD    N  +  Y 
Sbjct: 632 ILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYV 691

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
               FE+  E++  M       +  TYN ++  Y R G +   +    +LP
Sbjct: 692 SNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLP 742


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 103/198 (52%), Gaps = 5/198 (2%)

Query: 50  IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + S Y  D     A A+ +EM+  G+ P + ++  L++   + G +       ++M ++G
Sbjct: 319 LISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNG 378

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            KP+    N+++ ++G  G+F +M  V        +  DI T+N L+ ++G+ G   ++ 
Sbjct: 379 CKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVS 438

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           G+F+ +      P+  T+ S +++YSR  L+   ++I++ M++AG YPD  T   ++SA 
Sbjct: 439 GVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSAL 498

Query: 225 SSEDQIEQVTTLVRTMHK 242
           +   + EQ   L   M +
Sbjct: 499 ARGGRWEQAEKLFAEMEE 516



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 3/182 (1%)

Query: 43  TPNLFVFIFS---IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           T N+ + ++S   + + +   +   MK  G+ P   ++  L++   +     +   V ++
Sbjct: 209 TYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDE 268

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  SG +PD    NS+L++YG+  + ++  EV+  ME+      + TYN LI+ Y + G 
Sbjct: 269 MKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGL 328

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E+   L Q +  K +KPDVVT+T+ ++   R       +  ++EM+  GC P+  T   
Sbjct: 329 LEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNA 388

Query: 220 LI 221
           LI
Sbjct: 389 LI 390



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A   F E+++   +  +     +++ Y K   V K E +++ M +S +       NS
Sbjct: 574 LAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNS 633

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y RLG  EK E +LT ++      D  +YN +I  YGR G +++   LF  +    
Sbjct: 634 LMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 693

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           LKPDVVT+   + +Y    ++   +E+   M+  GC P+  T
Sbjct: 694 LKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERT 735



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 2/185 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG-QFEKMEE 130
           P   ++  L++A+S+ G       V  +M  SG++P     N +L++Y ++   ++++ E
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           ++ +M++   A D  TYN LI+   R    ++   +F  + A   +PD VT+ S L  Y 
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 289

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KDMKTALP 249
           + + +   +E+ +EM   GC P   T   LIS+   +  +EQ   L + M  K MK  + 
Sbjct: 290 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVV 349

Query: 250 IYFNL 254
            Y  L
Sbjct: 350 TYTTL 354



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 84/161 (52%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   SK  N+A+ E    ++ +     D  V+N+M+++YG+     K+E++L+ M++ +
Sbjct: 564 LVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESA 623

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                +TYN L+++Y R G  EK E +   + +  ++PD  ++ + + AY RK   +   
Sbjct: 624 INLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEAS 683

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +F EM  +G  PD  T  + + +  S    E+   LVR M
Sbjct: 684 RLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYM 724



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 81/167 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  AVF+E +  G  P + +   LL  + + G  ++  GV  +M K+G  P+     S
Sbjct: 399 FPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 458

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F+   ++   M +     D+STYN +++   RGG  E+ E LF  +  + 
Sbjct: 459 LISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERD 518

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            KPD  +++S L AY+  K   +   + +++      P     K L+
Sbjct: 519 CKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLV 565



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 1/178 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
           F DA AVF  M   G+ P + ++ ++L  YSK     K    ++  M + G+ PD +  N
Sbjct: 188 FRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYN 247

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   R   +++  +V   M+   +  D  T+N L+++YG+    ++   + Q +   
Sbjct: 248 TLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERV 307

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              P VVT+ S +++Y +  L  + + + +EM   G  PD  T   LIS      +I+
Sbjct: 308 GCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 365



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 90/182 (49%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           ++EM R G  P + ++  L+  +   G   +   V ++   +G  PD    N++L ++G+
Sbjct: 371 YDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQ 430

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G   ++  V   M+K  Y  +  TY  LI+ Y R G  +    +++ +    + PDV T
Sbjct: 431 NGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVST 490

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + L+A +R   + +  ++F EM +  C PD  +   L+ A ++  +++++  L   ++
Sbjct: 491 YNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIY 550

Query: 242 KD 243
            +
Sbjct: 551 SE 552



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           MK   I  +  ++  L+  YS+ G+  KCE ++ ++  SG++PD +  N+++  YGR GQ
Sbjct: 619 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 678

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            ++   + + M+      D+ TYNI +  Y      E+   L + +  +  KP+  T+ S
Sbjct: 679 MKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNS 738

Query: 185 RLAAYSR 191
            +  Y R
Sbjct: 739 IVEGYCR 745



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 86/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +F EM+     P   S+  LL AY+    + K + + + ++   ++P  +++ +
Sbjct: 504 WEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKT 563

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +  ++    + E+    + +   + DI+  N +++IYG+   + K+E +   +    
Sbjct: 564 LVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESA 623

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +     T+ S +  YSR     +C  I  E+  +G  PD  +   +I A   + Q+++ +
Sbjct: 624 INLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEAS 683

Query: 235 TLVRTM 240
            L   M
Sbjct: 684 RLFSEM 689



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  E+K  G+ P   S+  ++ AY + G + +   + ++M  SGLKPD    N  +  Y 
Sbjct: 650 ILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYV 709

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
               FE+  E++  M       +  TYN ++  Y R G +   +    +LP
Sbjct: 710 SNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLP 760


>gi|125556718|gb|EAZ02324.1| hypothetical protein OsI_24426 [Oryza sativa Indica Group]
 gi|125598467|gb|EAZ38247.1| hypothetical protein OsJ_22623 [Oryza sativa Japonica Group]
          Length = 478

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 106/206 (51%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M   G+    +++MLLL AY++ G +     V+ +M + G++ DT   ++++ 
Sbjct: 140 ADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVR 199

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LY   G ++K  +++  M++     D+  YN LI+ +G+ G +     +F  + A+ +KP
Sbjct: 200 LYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKP 259

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ TW S +  + R    +R L  F  M + G YPD      +IS    + + +++  L 
Sbjct: 260 DITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLF 319

Query: 238 RTM-HKDMKTALPIY---FNLYGEKG 259
             M ++ +K +  +Y    ++YG+ G
Sbjct: 320 HGMRNRGLKESGAVYAVLVDIYGQYG 345



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 18/208 (8%)

Query: 30  SHFMLINFLLLQHTPN-------LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSH 77
           +H  L + LLLQ   +        ++ + + Y       D+  V  EMKR GI      +
Sbjct: 135 AHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGY 194

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
             L+  Y   G   K   +I +M + G++ D  + N +++ +G+ GQ     +V   M  
Sbjct: 195 STLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCA 254

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD---VVTWTSRLAAYSRKKL 194
                DI+T+N LI  + R G  ++    F ++  + + PD    VT  SRL    +   
Sbjct: 255 EGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGK--- 311

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +    ++F  M + G    G    VL+ 
Sbjct: 312 WDEIKKLFHGMRNRGLKESGAVYAVLVD 339



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 71/153 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  +M+  G+ P+  ++  L+ A ++ G   + E ++ +M + GL+PD    N++L    
Sbjct: 73  LLADMQAAGLRPSGAAYARLIRALARAGRTLEAEALLLEMRRLGLRPDAAHYNALLEGLL 132

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
                   + +L  M     A +  TY +L+N Y R G +E    +   +  + ++ D  
Sbjct: 133 STAHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTA 192

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +++ +  Y    ++++  ++  EM + G   D
Sbjct: 193 GYSTLVRLYRDNGMWKKATDLIMEMQELGVELD 225



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 79/175 (45%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  M+  G+ P  K  + +++   + G   + + + + M   GLK    V   ++++YG+
Sbjct: 284 FAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQ 343

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G F    + + A++  +     S + +L N Y + G  E+   + Q + A+ ++P++V 
Sbjct: 344 YGHFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVM 403

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
               + A+     +   L + + + D+G  PD  T   L+ A     + E+   L
Sbjct: 404 LNLLINAFGTAGRHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKFEKACPL 458



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 2/181 (1%)

Query: 45  NLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           N  +  F  Y   +DA  VF++M   G+ P + +   L+  + + GN  +       M +
Sbjct: 230 NGLIDTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQE 289

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G+ PD  +  ++++  G  G++++++++   M         + Y +L++IYG+ G    
Sbjct: 290 EGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRD 349

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
                 +L A+ L+     +     AY+++ L  + + + + M   G  P+     +LI+
Sbjct: 350 AHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLIN 409

Query: 223 A 223
           A
Sbjct: 410 A 410



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 5/164 (3%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +FV I S       + +   +F  M+  G+  +   + +L+  Y + G+       + 
Sbjct: 296 PKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVA 355

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +    L+    +   + N Y + G  E+   VL  ME      ++   N+LIN +G  G
Sbjct: 356 ALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAG 415

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
              +   + Q +    + PDVVT+T+ + A+ R K + +   +F
Sbjct: 416 RHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKFEKACPLF 459


>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
 gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
          Length = 638

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 19/231 (8%)

Query: 3   KPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHA-- 60
           +P  TT +  +A  A  S     L   S  +L   L    +P+   +    Y  DA A  
Sbjct: 18  RPDLTTYNTLLAAAAVRS-----LADQSEMLLRTMLEAGVSPDTVSYR---YIVDAFASA 69

Query: 61  --------VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
                   +F EM  +G T    +++ L+ A+++ G  A+   V+ QM   G  P     
Sbjct: 70  GNLSRVAELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATY 129

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
             +L+LYGR G+F+ + E+   M + +   D +TYN+L  +YG GGF +++  LF  +  
Sbjct: 130 RVLLDLYGRQGRFDGVRELFREM-RTAVPPDTATYNVLFRVYGDGGFFKEVVELFHDMLE 188

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             ++PD+VT  + +AA  R  L+    E+ E M   G  P       L+ A
Sbjct: 189 TGVEPDMVTCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEA 239



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 1/160 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G++P   S+  ++ A++  GN+++   + ++M   G   D      ++  + R+G 
Sbjct: 47  MLEAGVSPDTVSYRYIVDAFASAGNLSRVAELFSEMAVMGNTADASAYLGLMEAHTRVGA 106

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   VL  M+    A   +TY +L+++YGR G  + +  LF+ +    + PD  T+  
Sbjct: 107 TAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTA-VPPDTATYNV 165

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               Y     ++  +E+F +M++ G  PD  T + +++AC
Sbjct: 166 LFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCENVMAAC 205



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 74/152 (48%), Gaps = 1/152 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           + +A+  F  M  +G  PT++++  L  AY++ G   + E + ++M + +G++ +    +
Sbjct: 246 YEEAYVAFNMMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIFSRMSNNAGIQKNKDSFD 305

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  Y +  Q +   +    M K  +  D  +   ++N Y   G I++ +  F+ L + 
Sbjct: 306 ALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSS 365

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              P ++ +   L+ Y+R   +    ++ EEM
Sbjct: 366 VTLPSIIAYCMMLSLYARNDRWADAYDMLEEM 397



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F EM R  + P   ++ +L   Y   G   +   + + M ++G++PD     +
Sbjct: 142 FDGVRELFREM-RTAVPPDTATYNVLFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCEN 200

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   GR G  E   EVL  M +         Y  L+   G     E+    F  +    
Sbjct: 201 VMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIG 260

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQV 233
             P + T+ +   AY+R  L++    IF  M  +AG   +  +   LI A     Q++  
Sbjct: 261 SLPTLETYNTLAFAYARGGLFQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDA 320

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 321 VKAYMEMRK 329



 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 81/192 (42%), Gaps = 8/192 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F +   +F +M   G+ P M +   ++ A  + G       V+  M + G+ P      
Sbjct: 175 FFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYT 234

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++   G    +E+       M +      + TYN L   Y RGG  ++ E +F  +   
Sbjct: 235 GLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIFSRMSNN 294

Query: 174 R-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C------S 225
             ++ +  ++ + + AY +       ++ + EM  +   PD  + + +++A C       
Sbjct: 295 AGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDE 354

Query: 226 SEDQIEQVTTLV 237
           S++Q E++ + V
Sbjct: 355 SKEQFEELQSSV 366



 Score = 40.8 bits (94), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D++TYN L+         ++ E L +++    + PD V++   + A++      R  E+F
Sbjct: 20  DLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYIVDAFASAGNLSRVAELF 79

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD----MKTALPIYFNLYGEK 258
            EM   G   D      L+ A +      +   ++R M  D          +  +LYG +
Sbjct: 80  SEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQ 139

Query: 259 G 259
           G
Sbjct: 140 G 140


>gi|357123699|ref|XP_003563545.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 492

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 106/204 (51%), Gaps = 4/204 (1%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +M   G+    +++MLLL AY++ G +     V+ +M + G++ DT   ++++ LY   G
Sbjct: 148 QMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRRGIQLDTAGYSTLVRLYRDNG 207

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            ++K  +++  M++     D+  YN LI+ +G+ G +     LF+ + A+ +KPD+ TW 
Sbjct: 208 MWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARRLFEKMRAEGIKPDIATWN 267

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HK 242
           + +  + R    +R L  F  M + G YPD      +IS    + + +++  L   M ++
Sbjct: 268 ALIRWHCRVGNMKRALRFFAAMQEEGMYPDPKIFMSIISRLGEQGKWDELKKLFDKMRNR 327

Query: 243 DMKTALPIY---FNLYGEKGVARS 263
            +K +  +Y    ++YG+ G  R 
Sbjct: 328 GLKESGAVYAVLVDIYGQYGRFRD 351



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 5/191 (2%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +F+ I S       + +   +F++M+  G+  +   + +L+  Y + G        + 
Sbjct: 298 PKIFMSIISRLGEQGKWDELKKLFDKMRNRGLKESGAVYAVLVDIYGQYGRFRDAHECVA 357

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +    L     +   + N Y + G  E+   VL  ME      ++   N+LIN +   G
Sbjct: 358 ALKAEELHLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFSTAG 417

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   +FQ +    + PDVVT+T+ +  + R K + +  E++ EM  AGC PD    +
Sbjct: 418 RHLEAVAVFQHIKDSGMSPDVVTYTTLMKGFMRVKKFEKVSEVYNEMERAGCTPDRKARE 477

Query: 219 VLISACSSEDQ 229
           +L  A  + +Q
Sbjct: 478 MLHDASVTLEQ 488



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 12/205 (5%)

Query: 30  SHFMLINFLLLQHTPN-------LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSH 77
           +H  L + LLLQ   +        ++ +   Y       D+  V  EMKR GI      +
Sbjct: 137 AHLCLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRRGIQLDTAGY 196

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
             L+  Y   G   K   +I +M + G++ D  + N +++ +G+ GQ      +   M  
Sbjct: 197 STLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARRLFEKMRA 256

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                DI+T+N LI  + R G +++    F ++  + + PD   + S ++    +  +  
Sbjct: 257 EGIKPDIATWNALIRWHCRVGNMKRALRFFAAMQEEGMYPDPKIFMSIISRLGEQGKWDE 316

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLIS 222
             ++F++M + G    G    VL+ 
Sbjct: 317 LKKLFDKMRNRGLKESGAVYAVLVD 341


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 94/179 (52%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  +K  G++PT  ++  ++  ++K GN+AK   ++ +M K G+ P+  +   +++ Y R
Sbjct: 294 FHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYAR 353

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G F    +V   M       DI TYNIL++ + + G ++K  G+ +++ A RL P + T
Sbjct: 354 GGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIET 413

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +TS L  Y +    ++ LE+F+ +  AG  P   +   L+S  +   Q+E    ++  M
Sbjct: 414 YTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEM 472



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 2/202 (0%)

Query: 43  TPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N+ V  F  +     A  V E ++   + PT++++  +L  Y K G++ K   V +++
Sbjct: 378 TYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRI 437

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             +GL+P     NS+L+   +  Q E    +L  M       +  +Y  L   Y R G +
Sbjct: 438 KTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDV 497

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           EK  G+FQ +  + L  D+V + + L A  +    +R +E+F+++ DAG   +  T   +
Sbjct: 498 EKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTM 557

Query: 221 ISACSSEDQIEQVTTLVRTMHK 242
           +   + + ++ +   L++ M K
Sbjct: 558 LDGWARKGELSKARDLLKDMQK 579



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 88/183 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM + G++P    + +++  Y++ G+      V   M  +GLKPD    N +++ + 
Sbjct: 328 ILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFC 387

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ +K   VL  ++       I TY  +++ Y +GG I+K   +F  +    L+P VV
Sbjct: 388 KAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVV 447

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ S L+  ++ +       + +EM+  G  P+  +   L    +    +E+   + + M
Sbjct: 448 SYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRM 507

Query: 241 HKD 243
            K+
Sbjct: 508 KKE 510



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 92/201 (45%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           +T  L  ++   +   A  VF+ +K  G+ P + S+  LL+  +K   +     ++++M 
Sbjct: 414 YTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEML 473

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
            +G+ P+     ++   Y R G  EK   +   M+K + A DI  Y  L+    + G ++
Sbjct: 474 ANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQ 533

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +FQ +    LK + +T+ + L  ++RK    +  ++ ++M   G + D       I
Sbjct: 534 RAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFI 593

Query: 222 SACSSEDQIEQVTTLVRTMHK 242
            AC      E+VT  +  M +
Sbjct: 594 KACFRSGDTEEVTETLAVMRE 614



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 40  LQHTPNLFVFIFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           +Q    +F  I S Y S      A   FE+ K   + P    +  ++ AY + GN+   E
Sbjct: 197 IQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVE 256

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ QM + G + +  +  ++LN +  +   EK       ++    +   +TY  ++ ++
Sbjct: 257 ALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLF 316

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G + K   + + +    + P+ + +   +  Y+R   +    +++E+M+ AG  PD 
Sbjct: 317 TKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDI 376

Query: 215 GTAKVLISA 223
            T  +L+ A
Sbjct: 377 VTYNILVHA 385



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 7/177 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+ ++   I+          A A  EEM   GI         +++ Y+  GN    E  
Sbjct: 164 PNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHW 223

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +     L P   V NS++  Y + G  E +E +L  ME+  +  ++  Y  ++N +  
Sbjct: 224 FEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAE 283

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
               EK    F  L A  L P   T+   +  +++     + L+I EEM   G  P+
Sbjct: 284 IRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPN 340



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 81/174 (46%), Gaps = 3/174 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+ MK+  +   + ++  LL A  K+G + +   V  Q+  +GLK +     +ML+
Sbjct: 500 AFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLD 559

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G+  K  ++L  M+K  +  D   Y   I    R G  E++      +  K+L+ 
Sbjct: 560 GWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEV 619

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS---ACSSED 228
           +  T+T+ +  +       + +  +E+   +G   D   +  L+S   +C+S++
Sbjct: 620 NARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLLSGLISCASQN 673



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/147 (19%), Positives = 68/147 (46%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            A+  +M+  G    +  +  +L  +++  +  KC    +++   GL P       ++ L
Sbjct: 256 EALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKL 315

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           + + G   K  ++L  M+K   + +   Y ++++ Y RGG       +++ + +  LKPD
Sbjct: 316 FTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPD 375

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +VT+   + A+ +     + L + E +
Sbjct: 376 IVTYNILVHAFCKAGRMDKALGVLENI 402



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 76/185 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A FE M+   I P +  +  L+ AY++  ++        +M   G++ +  V  S+++
Sbjct: 150 ARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIIS 209

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E  E      +  +       YN ++  Y + G +E +E L   +  +  + 
Sbjct: 210 GYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQG 269

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++  +T+ L  ++  +   +CL  F  +   G  P   T   ++   +    + +   ++
Sbjct: 270 NLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDIL 329

Query: 238 RTMHK 242
             M K
Sbjct: 330 EEMDK 334



 Score = 37.4 bits (85), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +  Y +L++ Y R G        F+++ A  +KP+V  +TS + AY+  +     +   E
Sbjct: 131 LREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTE 190

Query: 204 EMIDAG 209
           EM+  G
Sbjct: 191 EMLSQG 196


>gi|224101979|ref|XP_002312498.1| predicted protein [Populus trichocarpa]
 gi|222852318|gb|EEE89865.1| predicted protein [Populus trichocarpa]
          Length = 404

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 3/201 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  V+EE+K  G  P   ++  ++ AY + G  +K E V  +M   G        +S
Sbjct: 190 FDAAVKVYEELKYDGCEPGQVTYASVINAYCRVGLYSKAEVVFFEMEAKGFDKCVVAYSS 249

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++YG+ G+      ++  M+      +   YN L++++GR   + ++E L++ +  ++
Sbjct: 250 IISMYGKTGRPRDAMRLVAKMKLKGCQPNTWIYNSLVDMHGRAKDLRRVEKLWKEMKRRK 309

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD VT+TS ++AYS+ K Y  C+  F E    G   DG  A +++   S   +I+++ 
Sbjct: 310 VAPDKVTYTSIISAYSKSKEYEMCVRFFHEYRINGGVIDGAIAGIMVGVFSKISRIDELL 369

Query: 235 TLVRTMHKDMKTALPIYFNLY 255
            L+R M  +     PI   LY
Sbjct: 370 KLLRDMKSE---GAPIDERLY 387



 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 80/177 (45%), Gaps = 8/177 (4%)

Query: 55  FSDAHAVFE-----EMKRLGITPTMKSHM--LLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
             DA  V E     E +++   P + S M  +L  +  ++G V +       M K G+  
Sbjct: 42  LGDAERVVEMFNEFESRKIDSKPMILSQMYKILCESLGRSGQVFEALEYFRDMKKKGILE 101

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D+ + +S++     + + +  EE+    ++     D  T+  L+ IY   G +EK   + 
Sbjct: 102 DSSMYSSLICSLVNIREVKLAEELYKEAQEKRMLKDPETFLKLVLIYMEEGQMEKTVEIV 161

Query: 168 QSLPA-KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + +    +LK     + + +  +S+++ +   ++++EE+   GC P   T   +I+A
Sbjct: 162 KEMKGTAKLKVSDCIFCAVVNGFSKRRGFDAAVKVYEELKYDGCEPGQVTYASVINA 218


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 2/185 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V +EM+  G  P++ ++  L++AY++ G + +   + +QM K G+KPD F   ++L
Sbjct: 344 EAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLL 403

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRL 175
           + + + G+ +   +V   M       +I T+N LI ++G RG F+E M+ +F+ +     
Sbjct: 404 SGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMK-VFEEIKICEC 462

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+VTW + LA + +  +      +F+EM  AG  P+  T   LISA S     +Q   
Sbjct: 463 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMA 522

Query: 236 LVRTM 240
           + R M
Sbjct: 523 IYRRM 527



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S    + + MK  G+ P + ++  L+++  +     +   V  +M  +G  PD    N+
Sbjct: 272 WSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNA 331

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++YG+  +  +  EVL  ME   +A  I TYN LI+ Y R G +++   L   +  K 
Sbjct: 332 LLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKG 391

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +KPDV T+T+ L+ + +       +++FEEM  AGC P+  T   LI
Sbjct: 392 IKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALI 438



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 93/184 (50%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+ EE+    I P       L+  YSK+  + + E    ++ + G  PD   +N+M+++Y
Sbjct: 592 ALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIY 651

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR     K  E+L  ++   +   ++TYN L+ +Y R    EK E + + + AK +KPD+
Sbjct: 652 GRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDI 711

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +++ + + AY R    +    IF EM D G  PD  T    I++ +S+    +   +V+ 
Sbjct: 712 ISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKY 771

Query: 240 MHKD 243
           M K+
Sbjct: 772 MIKN 775



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 91/170 (53%), Gaps = 1/170 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           + +A  VF++++  G  PT+ ++ ++L  Y K G   +K  G+++ M  SG+ PD +  N
Sbjct: 236 YREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYN 295

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   R   +E+  EV   M+   ++ D  TYN L+++YG+     +   + + + A 
Sbjct: 296 TLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEAS 355

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              P +VT+ S ++AY+R  L    +E+  +M+  G  PD  T   L+S 
Sbjct: 356 GFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG 405



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 95/186 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  +M + GI P + ++  LL+ + KTG       V  +M  +G +P+    N+
Sbjct: 377 LDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNA 436

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ ++G  G F +M +V   ++      DI T+N L+ ++G+ G   ++ G+F+ +    
Sbjct: 437 LIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 496

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+  T+ + ++AYSR   + + + I+  M+DAG  PD  T   +++A +     EQ  
Sbjct: 497 FVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSE 556

Query: 235 TLVRTM 240
            ++  M
Sbjct: 557 KVLAEM 562



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 95/186 (51%), Gaps = 1/186 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++  +++  G+   + ++  L+TAY+  G   +   V  ++ + G +P     N +LN
Sbjct: 204 AASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILN 263

Query: 118 LYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +YG++G  + K+  ++ +M+    A D+ TYN LI+   RG   E+   +F+ + A    
Sbjct: 264 VYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFS 323

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+ + L  Y + +  R  +E+ +EM  +G  P   T   LISA + +  +++   L
Sbjct: 324 PDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMEL 383

Query: 237 VRTMHK 242
              M K
Sbjct: 384 KSQMVK 389



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 97/196 (49%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           + V+  S   ++    F E++  G +P + +   +++ Y +   V+K   ++N +  SG 
Sbjct: 613 VLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGF 672

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P     NS++ +Y R   FEK E++L  +       DI ++N +I  Y R G +++   
Sbjct: 673 TPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASR 732

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +F  +    L PDV+T+ + +A+Y+   ++   +++ + MI  GC P+  T   LI    
Sbjct: 733 IFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFC 792

Query: 226 SEDQIEQVTTLVRTMH 241
             ++ ++ ++ +  + 
Sbjct: 793 KLNRRDEASSFISNLR 808



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 93/184 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFEEM+  G  P + +   L+  +   GN  +   V  ++      PD    N++L 
Sbjct: 415 AMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLA 474

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M++  +  +  T+N LI+ Y R GF ++   +++ +    + P
Sbjct: 475 VFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTP 534

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + LAA +R  L+ +  ++  EM D  C P+  T   L+ A ++  ++E+++ L 
Sbjct: 535 DLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALA 594

Query: 238 RTMH 241
             ++
Sbjct: 595 EEIY 598



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 82/167 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+   VF+EMKR G  P   +   L++AYS+ G   +   +  +M  +G+ PD    N++
Sbjct: 483 SEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAV 542

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L    R G +E+ E+VL  M+ G    +  TY  L++ Y  G  +E+M  L + + +  +
Sbjct: 543 LAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGII 602

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +P  V   + +  YS+  L       F E+ + G  PD  T   ++S
Sbjct: 603 EPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVS 649



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +   VFEE+K     P + +   LL  + + G  ++  GV  +M ++G  P+    N+
Sbjct: 447 FVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNT 506

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++   +   M       D+STYN ++    RGG  E+ E +   +   R
Sbjct: 507 LISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGR 566

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            KP+ +T+ S L AY+  K   R   + EE+      P     K L+   S  D + + 
Sbjct: 567 CKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTET 625



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++++   K G  +    +++ +   G+  D +   S++  Y   G++ +   V   +E+ 
Sbjct: 190 VIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE 249

Query: 139 SYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                + TYN+++N+YG+ G    K+ GL  S+ +  + PD+ T+ + +++  R  LY  
Sbjct: 250 GCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEE 309

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             E+FEEM  AG  PD  T   L+       +  +   +++ M 
Sbjct: 310 AAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEME 353



 Score = 37.0 bits (84), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 38/78 (48%)

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
           S   ++I++ G+ G       L   L    +  D+  +TS + AY+    YR  + +F++
Sbjct: 186 SVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKK 245

Query: 205 MIDAGCYPDGGTAKVLIS 222
           + + GC P   T  V+++
Sbjct: 246 LEEEGCRPTLITYNVILN 263


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV--INQMHKSGLKPDTFVI 112
           F+    + + M+  G  P + S   L+ A  K G +     +  +N++ +SGL+PDT   
Sbjct: 270 FNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITY 329

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++++   R    E+  +V   ME      D+ TYN +I++YGR G   K E LF  L +
Sbjct: 330 NTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLES 389

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +   PD V++ S L A++R+    +  EI+EEM+  G   D  T   +I     + Q E 
Sbjct: 390 RGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNEL 449

Query: 233 VTTLVRTMH 241
              L R M 
Sbjct: 450 ALQLYRDMQ 458



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 93/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  E++R G+ P   ++  L++A S+  N+ +   V + M     +PD +  N+M++
Sbjct: 310 AIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMIS 369

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR G   K E++   +E   +  D  +YN L+  + R G +EK++ +++ +       
Sbjct: 370 VYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGK 429

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y ++      L+++ +M  +G  PD  T  VLI +    ++I +   ++
Sbjct: 430 DEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVM 489

Query: 238 RTM 240
             M
Sbjct: 490 SEM 492



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VF++M+     P + ++  +++ Y + G   K E + N +   G  PD    NS
Sbjct: 342 LEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNS 401

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + R G  EK++E+   M K  +  D  TYN +I++YG+ G  E    L++ + +  
Sbjct: 402 LLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSG 461

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
             PD VT+T  + +  +         +  EM++ G  P   T   LI
Sbjct: 462 RNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALI 508



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 80/157 (50%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +   ++  MK  G  PTM  + ++    S+   V   E ++++M ++G KPD  + NS+L
Sbjct: 901  EVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVL 960

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +Y  +  F K  +V   +++     D  TYN LI +Y R    E+   L   +    L+
Sbjct: 961  KMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLE 1020

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            P + T+ S +A++ +++L  +  E+FEE+   GC  D
Sbjct: 1021 PKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLD 1057



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 7/207 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y        A  +F +++  G  P   S+  LL A+++ GNV K + +
Sbjct: 359 PDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEI 418

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M K G   D    N+M+++YG+ GQ E   ++   M+      D  TY +LI+  G+
Sbjct: 419 WEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGK 478

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              I +  G+   +    +KP + T+++ +  Y++        E F+ M+ +G  PD   
Sbjct: 479 TNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLA 538

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
             V++      ++ ++  TL + M  D
Sbjct: 539 YSVMLDIHLRFNEPKRAMTLYKEMLHD 565



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 85/187 (45%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +  A A+F  M R G +PT+ +   LL A    G + +   V+ ++   G K     I  
Sbjct: 829  YERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILL 888

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ML+ + R G   +++++   M+   Y   +  Y ++  +  RG  +  +E +   +    
Sbjct: 889  MLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAG 948

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             KPD+  W S L  Y   + +R+ +++++ + + G  PD  T   LI     + + E+  
Sbjct: 949  FKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGF 1008

Query: 235  TLVRTMH 241
            +L+  M 
Sbjct: 1009 SLMHEMR 1015



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 88/196 (44%)

Query: 46   LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
            L   I      + + V +E++ +G   +  S +L+L A+++ GN+ + + + + M  +G 
Sbjct: 855  LQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGY 914

Query: 106  KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
             P   +   M  L  R  Q   +E +L+ ME+  +  D+S +N ++ +Y       K   
Sbjct: 915  FPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQ 974

Query: 166  LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            ++Q +    L+PD  T+ + +  Y R         +  EM  AG  P   T K L+++  
Sbjct: 975  VYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFG 1034

Query: 226  SEDQIEQVTTLVRTMH 241
             +  +EQ   L   + 
Sbjct: 1035 KQQLVEQAEELFEELQ 1050



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 107/255 (41%), Gaps = 23/255 (9%)

Query: 2   KKPQCTTCDLC-----VAQRAPH------SW-NFNYLPYPSHFMLINFLLLQHTPNLFVF 49
           +K Q T  DLC     V Q + H       W N  +   P+  ML   L +    N    
Sbjct: 179 RKVQMTPTDLCFVVKSVGQESWHRALEVYEWLNLRHWYSPNARMLSTILSVLGKANQEAL 238

Query: 50  IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
              ++     +            T++ +  ++  Y++ G   K + +++ M + G KPD 
Sbjct: 239 AVEVFMRAEPSA---------GNTVQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDL 289

Query: 110 FVINSMLNLYGRLGQF--EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
              N+++N   + G        E+L  + +     D  TYN LI+   R   +E+   +F
Sbjct: 290 VSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVF 349

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             + A   +PD+ T+ + ++ Y R  L  +  ++F ++   G +PD  +   L+ A + E
Sbjct: 350 DDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFARE 409

Query: 228 DQIEQVTTLVRTMHK 242
             +E+V  +   M K
Sbjct: 410 GNVEKVKEIWEEMVK 424



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 83/197 (42%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L+ F           ++EEM ++G      ++  ++  Y K G       +   M  SG 
Sbjct: 403 LYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGR 462

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            PD      +++  G+  +  +   V++ M        + TY+ LI  Y + G   + E 
Sbjct: 463 NPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEE 522

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            F  +    ++PD + ++  L  + R    +R + +++EM+  G   D    ++++    
Sbjct: 523 TFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEMLHDGITLDHSLYELMLRTLR 582

Query: 226 SEDQIEQVTTLVRTMHK 242
             +++E +  ++R M +
Sbjct: 583 KVNKVEDIGRVIRDMEE 599



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 10/196 (5%)

Query: 27  PYPSHFMLINFL----LLQHTPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSH 77
           P  +H  LI+F     +L +  +L+V +   Y     +  A +V   +++  IT   K  
Sbjct: 758 PETAHH-LIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVW 816

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
             L+ AY+ +G   +   + N M + G  P    IN +L      G+ +++  V+  ++ 
Sbjct: 817 NALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQD 876

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
             +    S+  ++++ + R G I +++ ++  + A    P +  +       SR K  R 
Sbjct: 877 MGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRD 936

Query: 198 CLEIFEEMIDAGCYPD 213
              +  EM +AG  PD
Sbjct: 937 VEAMLSEMEEAGFKPD 952



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 75/153 (49%), Gaps = 2/153 (1%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +FEE++  G       +  ++  Y  +G+ +K E + + M  +G++P    ++ ++ 
Sbjct: 1042 AEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMV 1101

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-FIEKMEGLFQSLPAKRLK 176
             YG  GQ ++ E+VL+ +++         Y+ +I+ Y R G +   ++ L Q +  + L+
Sbjct: 1102 SYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQ-MKKEGLE 1160

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            PD   WT  + A S  +     + +   + DAG
Sbjct: 1161 PDHRIWTCFIRAASLSRRTSEAIVLLNALQDAG 1193



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 85/199 (42%), Gaps = 5/199 (2%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           + LG T +      L+    +   + +   V + M   G+K    +  SM+ LY ++G  
Sbjct: 699 RELGFTGSFTMFESLIQCCLENELITEASQVFSDMRFCGIKASESLYESMVLLYCKMGFP 758

Query: 126 EKMEEVLT-AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           E    ++  A   G    +IS Y  +I  YGR    +K E +  +L  + +  D   W +
Sbjct: 759 ETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNA 818

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH--- 241
            + AY+    Y R   IF  M+  G  P   T   L+ A   + +++++  +V+ +    
Sbjct: 819 LIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMG 878

Query: 242 -KDMKTALPIYFNLYGEKG 259
            K  K+++ +  + +   G
Sbjct: 879 FKISKSSILLMLDAFARAG 897



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 58/127 (45%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            F     V++ +K  G+ P   ++  L+  Y +     +   ++++M  +GL+P      S
Sbjct: 969  FRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKS 1028

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++  +G+    E+ EE+   ++      D S Y+ ++ IY   G   K E LF  +    
Sbjct: 1029 LVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAG 1088

Query: 175  LKPDVVT 181
            ++P + T
Sbjct: 1089 VEPTIAT 1095


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 2/185 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V +EM+  G  P++ ++  L++AY++ G + +   + +QM K G+KPD F   ++L
Sbjct: 344 EAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLL 403

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRL 175
           + + + G+ +   +V   M       +I T+N LI ++G RG F+E M+ +F+ +     
Sbjct: 404 SGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMK-VFEEIKICEC 462

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+VTW + LA + +  +      +F+EM  AG  P+  T   LISA S     +Q   
Sbjct: 463 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMA 522

Query: 236 LVRTM 240
           + R M
Sbjct: 523 IYRRM 527



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S    + + MK  G+ P + ++  L+++  +     +   V  +M  +G  PD    N+
Sbjct: 272 WSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNA 331

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++YG+  +  +  EVL  ME   +A  I TYN LI+ Y R G +++   L   +  K 
Sbjct: 332 LLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKG 391

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +KPDV T+T+ L+ + +       +++FEEM  AGC P+  T   LI
Sbjct: 392 IKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALI 438



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 93/184 (50%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+ EE+    I P       L+  YSK+  + + E    ++ + G  PD   +N+M+++Y
Sbjct: 592 ALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIY 651

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR     K  E+L  ++   +   ++TYN L+ +Y R    EK E + + + AK +KPD+
Sbjct: 652 GRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDI 711

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +++ + + AY R    +    IF EM D G  PD  T    I++ +S+    +   +V+ 
Sbjct: 712 ISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKY 771

Query: 240 MHKD 243
           M K+
Sbjct: 772 MIKN 775



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 91/170 (53%), Gaps = 1/170 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           + +A  VF++++  G  PT+ ++ ++L  Y K G   +K  G+++ M  SG+ PD +  N
Sbjct: 236 YREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYN 295

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   R   +E+  EV   M+   ++ D  TYN L+++YG+     +   + + + A 
Sbjct: 296 TLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEAS 355

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              P +VT+ S ++AY+R  L    +E+  +M+  G  PD  T   L+S 
Sbjct: 356 GFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG 405



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 95/186 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  +M + GI P + ++  LL+ + KTG       V  +M  +G +P+    N+
Sbjct: 377 LDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNA 436

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ ++G  G F +M +V   ++      DI T+N L+ ++G+ G   ++ G+F+ +    
Sbjct: 437 LIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 496

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+  T+ + ++AYSR   + + + I+  M+DAG  PD  T   +++A +     EQ  
Sbjct: 497 FVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSE 556

Query: 235 TLVRTM 240
            ++  M
Sbjct: 557 KVLAEM 562



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 95/186 (51%), Gaps = 1/186 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++  +++  G+   + ++  L+TAY+  G   +   V  ++ + G +P     N +LN
Sbjct: 204 AASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILN 263

Query: 118 LYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +YG++G  + K+  ++ +M+    A D+ TYN LI+   RG   E+   +F+ + A    
Sbjct: 264 VYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFS 323

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+ + L  Y + +  R  +E+ +EM  +G  P   T   LISA + +  +++   L
Sbjct: 324 PDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMEL 383

Query: 237 VRTMHK 242
              M K
Sbjct: 384 KSQMVK 389



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 93/184 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFEEM+  G  P + +   L+  +   GN  +   V  ++      PD    N++L 
Sbjct: 415 AMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLA 474

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M++  +  +  T+N LI+ Y R GF ++   +++ +    + P
Sbjct: 475 VFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTP 534

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + LAA +R  L+ +  ++  EM D  C P+  T   L+ A ++  ++E+++ L 
Sbjct: 535 DLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALA 594

Query: 238 RTMH 241
             ++
Sbjct: 595 EEIY 598



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 88/176 (50%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           + V+  S   ++    F E++  G +P + +   +++ Y +   V+K   ++N +  SG 
Sbjct: 613 VLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGF 672

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P     NS++ +Y R   FEK E++L  +       DI ++N +I  Y R G +++   
Sbjct: 673 TPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASR 732

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +F  +    L PDV+T+ + +A+Y+   ++   +++ + MI   C P+  T   LI
Sbjct: 733 IFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLI 788



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 82/167 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+   VF+EMKR G  P   +   L++AYS+ G   +   +  +M  +G+ PD    N++
Sbjct: 483 SEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAV 542

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L    R G +E+ E+VL  M+ G    +  TY  L++ Y  G  +E+M  L + + +  +
Sbjct: 543 LAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGII 602

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +P  V   + +  YS+  L       F E+ + G  PD  T   ++S
Sbjct: 603 EPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVS 649



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +   VFEE+K     P + +   LL  + + G  ++  GV  +M ++G  P+    N+
Sbjct: 447 FVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNT 506

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++   +   M       D+STYN ++    RGG  E+ E +   +   R
Sbjct: 507 LISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGR 566

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            KP+ +T+ S L AY+  K   R   + EE+      P     K L+   S  D + + 
Sbjct: 567 CKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTET 625



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++++   K G  +    +++ +   G+  D +   S++  Y   G++ +   V   +E+ 
Sbjct: 190 VIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE 249

Query: 139 SYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                + TYN+++N+YG+ G    K+ GL  S+ +  + PD+ T+ + +++  R  LY  
Sbjct: 250 GCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEE 309

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             E+FEEM  AG  PD  T   L+       +  +   +++ M 
Sbjct: 310 AAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEME 353



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/140 (20%), Positives = 61/140 (43%), Gaps = 2/140 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           ++++  + +F  +  +  E+   G+ P + S   ++ AY + G + +   +  +M   GL
Sbjct: 683 MYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGL 742

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            PD    N+ +  Y     F +  +V+  M K     + +TYN LI+ + +    ++   
Sbjct: 743 APDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANS 802

Query: 166 LFQSLPAKRLKPDVVTWTSR 185
              +L  + L P V     R
Sbjct: 803 FISNL--RNLDPSVTKDEER 820



 Score = 37.0 bits (84), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 38/78 (48%)

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
           S   ++I++ G+ G       L   L    +  D+  +TS + AY+    YR  + +F++
Sbjct: 186 SVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKK 245

Query: 205 MIDAGCYPDGGTAKVLIS 222
           + + GC P   T  V+++
Sbjct: 246 LEEEGCRPTLITYNVILN 263


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 94/182 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EM   G  P + S+ +LL AY+K+G++ +  GV +QM  +G  P+    + +LNL+G
Sbjct: 304 LLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFG 363

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+++ + ++   M+  +   D +TYNILI ++G GG+ +++  LF  +  + ++PD+ 
Sbjct: 364 QSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDME 423

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A  +  L+    +I + M      P       +I A       E+      TM
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483

Query: 241 HK 242
           H+
Sbjct: 484 HE 485



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 5/198 (2%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F EM+  GI P + ++  LL+A +  G   + E V   M+  G+ PD    + ++  +
Sbjct: 233 GLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETF 292

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+L + EK+ ++L+ M  G    DI++YN+L+  Y + G I++  G+F  + A    P+ 
Sbjct: 293 GKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNA 352

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T++  L  + +   Y    ++F EM  +   PD  T  +LI         ++V TL   
Sbjct: 353 NTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHD 412

Query: 240 M-----HKDMKTALPIYF 252
           M       DM+T   I F
Sbjct: 413 MVEENIEPDMETYEGIIF 430



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 61  VFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +F+ M+R +   P    + ++++   + G + KC  V ++M   G+    F   +++N Y
Sbjct: 127 LFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY 186

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPD 178
           GR G++E   E+L  M+    +  I TYN +IN   RGG   E + GLF  +  + ++PD
Sbjct: 187 GRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPD 246

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           +VT+ + L+A + + L      +F  M D G  PD  T   L+       ++E+V+ L+ 
Sbjct: 247 IVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLS 306

Query: 239 TMHKDMK----TALPIYFNLYGEKGVARSNLGQY 268
            M         T+  +    Y + G  +  +G +
Sbjct: 307 EMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVF 340



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           + + MK   I+P++ ++  ++ A ++ G +     G+  +M   G++PD    N++L+  
Sbjct: 198 LLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSAC 257

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              G  ++ E V   M  G    D++TY+ L+  +G+   +EK+  L   + +    PD+
Sbjct: 258 AIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDI 317

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQVTTL 236
            ++   L AY++    +  + +F +M  AGC P+  T  VL++        D + Q+   
Sbjct: 318 TSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLE 377

Query: 237 VRTMHKDMKTAL-PIYFNLYGEKG 259
           +++ + D   A   I   ++GE G
Sbjct: 378 MKSSNTDPDAATYNILIEVFGEGG 401



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF  M   GI P + ++  L+  + K   + K   ++++M   G  PD    N +L
Sbjct: 265 EAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLL 324

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y + G  ++   V   M+      + +TY++L+N++G+ G  + +  LF  + +    
Sbjct: 325 EAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTD 384

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           PD  T+   +  +     ++  + +F +M++    PD  T + +I AC
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFAC 432



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF +M+  G TP   ++ +LL  + ++G       +  +M  S   PD    N ++
Sbjct: 335 EAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILI 394

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++G  G F+++  +   M + +   D+ TY  +I   G+GG  E    + Q + A  + 
Sbjct: 395 EVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIV 454

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           P    +T  + A+ +  LY   L  F  M + G  P
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNP 490



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 77/152 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A   F  M  +G  P+++++  LL ++++ G V + E +++++  SG+  +    N+
Sbjct: 473 YEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNA 532

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +  Y + G+FE+  +    MEK     D  T   ++++Y     +++    F+ + A  
Sbjct: 533 QIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASD 592

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + P ++ +   LA Y + + +    E+ EEM+
Sbjct: 593 ILPSIMCYCMMLAVYGKTERWDDVNELLEEML 624



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 69/156 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  + + M    I P+ K++  ++ A+ +     +     N MH+ G  P     +S+L
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLL 499

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R G  ++ E +L+ +       +  T+N  I  Y +GG  E+    +  +   R  
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCD 559

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           PD  T  + L+ YS  +L   C E FEEM  +   P
Sbjct: 560 PDERTLEAVLSVYSFARLVDECREQFEEMKASDILP 595



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 83/185 (44%), Gaps = 2/185 (1%)

Query: 43  TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N+ + +F    YF +   +F +M    I P M+++  ++ A  K G       ++  M
Sbjct: 389 TYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM 448

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             + + P +     ++  +G+   +E+       M +      I TY+ L+  + RGG +
Sbjct: 449 TANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLV 508

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++ E +   L    +  +  T+ +++ AY +   +   ++ + +M  + C PD  T + +
Sbjct: 509 KESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568

Query: 221 ISACS 225
           +S  S
Sbjct: 569 LSVYS 573


>gi|223946379|gb|ACN27273.1| unknown [Zea mays]
 gi|413924536|gb|AFW64468.1| pentatricopeptide repeat 5 [Zea mays]
          Length = 386

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 93/168 (55%), Gaps = 1/168 (0%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            + A   FE+MK +    PT+ ++ +LL A+++ G+  + + +   + +S + PD +  N
Sbjct: 66  LAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYN 125

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L+ YG+ G  ++ME VL  M+      D+ T+NILI+ YGR    +KME +F+SL   
Sbjct: 126 GVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRS 185

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + +P   T+ S +  Y R +L  +   + E+M + G  P+  T + LI
Sbjct: 186 KERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLI 233



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 75/146 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+++    ++P + ++  +L AY K G + + E V+ +M  +  +PD    N +++ YG
Sbjct: 108 LFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYG 167

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R   F+KME+V  ++ +        T+N +I  YGR    EK E + + +     KP+ V
Sbjct: 168 RKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYV 227

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMI 206
           T    +  Y+      +  ++F+E++
Sbjct: 228 TQECLIIMYAHCDCVSKARQVFDELV 253



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 24/198 (12%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML--NLYGR---------LGQFEKM 128
           L++   + G +     + +QM  SG KPDT V NS++  +L+ R         LG FEKM
Sbjct: 17  LISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKALAKALGYFEKM 76

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           +     +E+      I TYNIL+  + + G  ++++ LF+ L    + PDV T+   L A
Sbjct: 77  K----CIERCQ--PTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDA 130

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQV-TTLVRTMHKDM 244
           Y +  + +    +   M    C PD  T  +LI +   +   D++EQV  +L+R+  +  
Sbjct: 131 YGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPT 190

Query: 245 KTALPIYFNLYGEKGVAR 262
               P + ++    G AR
Sbjct: 191 H---PTFNSMITNYGRAR 205



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 92/187 (49%), Gaps = 5/187 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAY----SKTGNVAKCEGVINQMH-KSGLKPDTFVINSM 115
           +F +M+  G  P    +  L+ A+     KT  +AK  G   +M      +P     N +
Sbjct: 33  LFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNIL 92

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  + + G  ++++ +   +++   + D+ TYN +++ YG+ G I++ME +   + + + 
Sbjct: 93  LRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQC 152

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDV+T+   + +Y RK+ + +  ++F+ ++ +   P   T   +I+        E+  +
Sbjct: 153 RPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAES 212

Query: 236 LVRTMHK 242
           +V  M +
Sbjct: 213 VVEKMEE 219



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 78/184 (42%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            +V   MK     P + +  +L+ +Y +     K E V   + +S  +P     NSM+  
Sbjct: 141 ESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITN 200

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           YGR    EK E V+  ME+  +  +  T   LI +Y     + K   +F  L   + K  
Sbjct: 201 YGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTKVH 260

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           + +  S L AY    L+     + +  +     P+G T K+L  A +  +    V  L++
Sbjct: 261 LSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYTKANDKLLVQKLLK 320

Query: 239 TMHK 242
            M+K
Sbjct: 321 RMNK 324



 Score = 40.4 bits (93), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 7/188 (3%)

Query: 33  MLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L+     Q  P++  F   I        F     VF+ + R    PT  +   ++T Y 
Sbjct: 143 VLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYG 202

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           +     K E V+ +M + G KP+      ++ +Y       K  +V   +        +S
Sbjct: 203 RARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTKVHLS 262

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           + N ++  Y   G   + + L  +   + + P+  T+     AY++        ++ + M
Sbjct: 263 SLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYTKANDKLLVQKLLKRM 322

Query: 206 IDAGCYPD 213
              G  P+
Sbjct: 323 NKQGIVPN 330



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY----SRKKLY 195
           Y AD   Y+ LI++ GR G I     LF  +     KPD   + S + A+     + K  
Sbjct: 7   YVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKAL 66

Query: 196 RRCLEIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN- 253
            + L  FE+M     C P   T  +L+ A +     +QV  L + + + + +     +N 
Sbjct: 67  AKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNG 126

Query: 254 ---LYGEKGVAR 262
               YG+ G+ +
Sbjct: 127 VLDAYGKNGMIK 138



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 57/132 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +V E+M+ LG  P   +   L+  Y+    V+K   V +++  S  K     +NSML 
Sbjct: 210 AESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLE 269

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G   + + +L    +     + STY +L   Y +      ++ L + +  + + P
Sbjct: 270 AYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYTKANDKLLVQKLLKRMNKQGIVP 329

Query: 178 DVVTWTSRLAAY 189
           +   +   L A+
Sbjct: 330 NKKFFLDALEAF 341


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 94/186 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM    I P + ++  ++  Y+K G +     + N+M   G+  D    N++L+
Sbjct: 350 AFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLS 409

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y +LG+FE+  +V   ME      D+ TYN L+  YG+    +++  +F+ +   R+ P
Sbjct: 410 VYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSP 469

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+++ +  YS+  LY+  +E+F E   AG   D      LI A      +E   TL+
Sbjct: 470 NLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLL 529

Query: 238 RTMHKD 243
             M K+
Sbjct: 530 DEMTKE 535



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 111/235 (47%), Gaps = 22/235 (9%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F EMK LG+     S+  LL+ Y+K G   +   V  +M  +G++ D    N+
Sbjct: 382 LDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNA 441

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  YG+  +++++  V   M++G  + ++ TY+ LI++Y +GG  ++   +F+      
Sbjct: 442 LLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAG 501

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA--------CSS 226
           LK DVV +++ + A  +  L    + + +EM   G  P+  T   +I A        C  
Sbjct: 502 LKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVV 561

Query: 227 ED-------QIEQVTTLV-------RTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
           +D       Q+E ++++V       +   K+    + I+  L  EK     N G+
Sbjct: 562 DDSGETTALQVESLSSIVVQEAIESQAADKEDNRIIEIFGKLAAEKACEAKNSGK 616



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 1/191 (0%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTF 110
           S Y ++A  VF+ MK  G+ P + ++  ++ A  K G    K   + + M  +G++PD  
Sbjct: 238 SGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRI 297

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             NS+L +  R G +E    + +AM       DI TYN L++   +GG ++    +   +
Sbjct: 298 TFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEM 357

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           P K + P+VVT+++ +  Y++       L +F EM   G   D  +   L+S  +   + 
Sbjct: 358 PTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRF 417

Query: 231 EQVTTLVRTMH 241
           EQ   + + M 
Sbjct: 418 EQALDVCKEME 428



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AVF+   + G   T+ +   L++AY ++G   +   V + M  +GL P+    N++++
Sbjct: 209 AKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVID 268

Query: 118 LYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             G+ G +F+K+ E+   M       D  T+N L+ +  RGG  E    LF ++  K + 
Sbjct: 269 ACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGID 328

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+ T+ + L A  +        EI  EM      P+  T   +I   +   +++    +
Sbjct: 329 QDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNM 388

Query: 237 VRTM 240
              M
Sbjct: 389 FNEM 392



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 1/153 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++   + G V   + V +   K G     +  +++++ YGR G   +  +V  +M+   
Sbjct: 196 MISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNG 255

Query: 140 YAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
              ++ TYN +I+  G+GG   +K+  +F  + +  ++PD +T+ S LA  SR  L+   
Sbjct: 256 LMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAA 315

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             +F  M+D G   D  T   L+ A     Q++
Sbjct: 316 RRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMD 348



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            +SG      + ++M++  GRLG+ E  + V     K  Y   +  ++ LI+ YGR G+ 
Sbjct: 182 RESGKNEQGKLASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYC 241

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKV 219
            +   +F S+ +  L P++VT+ + + A  +  + +++ +EIF+ M+  G  PD  T   
Sbjct: 242 NEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNS 301

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           L++ CS     E    L   M
Sbjct: 302 LLAVCSRGGLWEAARRLFSAM 322



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  M   GI   + ++  LL A  K G +     ++++M    + P+    ++M++
Sbjct: 315 ARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMID 374

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++G+ +    +   M+      D  +YN L+++Y + G  E+   + + +    ++ 
Sbjct: 375 GYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRK 434

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           DVVT+ + LA Y ++  Y     +FEEM      P+  T   LI   S
Sbjct: 435 DVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYS 482



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 36/198 (18%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PNL  +  +  +Y     + +A  VF E K+ G+   +  +  L+ A  K G V     
Sbjct: 468 SPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVT 527

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLG---------------QFEKMEEVLTAMEKGSY 140
           ++++M K G++P+    NS+++ +GR                 Q E +  ++      S 
Sbjct: 528 LLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESLSSIVVQEAIESQ 587

Query: 141 AADISTYNILINIYGRGGFIEKME-------------GLFQSLPAKRLKPDVVTWTSRLA 187
           AAD    N +I I+G+    +  E             G+FQ +   ++KP+VVT+++ L 
Sbjct: 588 AADKED-NRIIEIFGKLAAEKACEAKNSGKQEILCILGVFQKMHELKIKPNVVTFSAILN 646

Query: 188 AYSRKKLYRRCLEIFEEM 205
           A SR   +     + EE+
Sbjct: 647 ACSRCDSFEDASMLLEEL 664


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 93/179 (51%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM   G  P + S+ +LL AY+K+G++ +  GV +QM  +G  P+    + +LNL+G+ G
Sbjct: 307 EMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSG 366

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           +++ + ++   M+  +   D +TYNILI ++G GG+ +++  LF  +  + ++PD+ T+ 
Sbjct: 367 RYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYE 426

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             + A  +  L+    +I + M      P       +I A       E+      TMH+
Sbjct: 427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHE 485



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 5/198 (2%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F EM+  GI P + ++  LL+A +  G   + E V   M+  G+ PD    + ++  +
Sbjct: 233 GLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETF 292

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+L + EK+ ++L  M  G    DI++YN+L+  Y + G I++  G+F  + A    P+ 
Sbjct: 293 GKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNA 352

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T++  L  + +   Y    ++F EM  +   PD  T  +LI         ++V TL   
Sbjct: 353 NTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHD 412

Query: 240 M-----HKDMKTALPIYF 252
           M       DM+T   I F
Sbjct: 413 MVEENIEPDMETYEGIIF 430



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 6/214 (2%)

Query: 61  VFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +F+ M+R +   P    + ++++   + G + KC  V ++M   G+    F   +++N Y
Sbjct: 127 LFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY 186

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPD 178
           GR G++E   E+L  M+    +  I TYN +IN   RGG   E + GLF  +  + ++PD
Sbjct: 187 GRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPD 246

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           +VT+ + L+A + + L      +F  M D G  PD  T   L+       ++E+V  L+ 
Sbjct: 247 IVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLG 306

Query: 239 TMHKDMK----TALPIYFNLYGEKGVARSNLGQY 268
            M         T+  +    Y + G  +  +G +
Sbjct: 307 EMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVF 340



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           + + MK   I+P++ ++  ++ A ++ G +     G+  +M   G++PD    N++L+  
Sbjct: 198 LLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSAC 257

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              G  ++ E V   M  G    D++TY+ L+  +G+   +EK+  L   + +    PD+
Sbjct: 258 AIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDI 317

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQVTTL 236
            ++   L AY++    +  + +F +M  AGC P+  T  VL++        D + Q+   
Sbjct: 318 TSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLE 377

Query: 237 VRTMHKDMKTAL-PIYFNLYGEKG 259
           +++ + D   A   I   ++GE G
Sbjct: 378 MKSSNTDPDAATYNILIEVFGEGG 401



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 78/168 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF  M   GI P + ++  L+  + K   + K   ++ +M   G  PD    N +L
Sbjct: 265 EAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLL 324

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y + G  ++   V   M+      + +TY++L+N++G+ G  + +  LF  + +    
Sbjct: 325 EAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTD 384

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           PD  T+   +  +     ++  + +F +M++    PD  T + +I AC
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFAC 432



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF +M+  G TP   ++ +LL  + ++G       +  +M  S   PD    N ++
Sbjct: 335 EAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILI 394

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++G  G F+++  +   M + +   D+ TY  +I   G+GG  E    + Q + A  + 
Sbjct: 395 EVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIV 454

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           P    +T  + A+ +  LY   L  F  M + G  P
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNP 490



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 80/184 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  + + M    I P+ K++  ++ A+ +     +     N MH+ G  P     +S+L
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLL 499

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R G  ++ E +L+ +       +  T+N  I  Y +GG  E+    +  +   R  
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCD 559

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T  + L+ YS  +L   C E FEEM  +   P      ++++     ++ + V  L
Sbjct: 560 PDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNEL 619

Query: 237 VRTM 240
           +  M
Sbjct: 620 LEEM 623



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 76/152 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A   F  M  +G  P++++   LL ++++ G V + E +++++  SG+  +    N+
Sbjct: 473 YEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNA 532

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +  Y + G+FE+  +    MEK     D  T   ++++Y     +++    F+ + A  
Sbjct: 533 QIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASD 592

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + P ++ +   LA Y + + +    E+ EEM+
Sbjct: 593 ILPSIMCYCMMLAVYGKTERWDDVNELLEEML 624



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 83/185 (44%), Gaps = 2/185 (1%)

Query: 43  TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N+ + +F    YF +   +F +M    I P M+++  ++ A  K G       ++  M
Sbjct: 389 TYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM 448

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             + + P +     ++  +G+   +E+       M +      I T++ L+  + RGG +
Sbjct: 449 TANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLV 508

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++ E +   L    +  +  T+ +++ AY +   +   ++ + +M  + C PD  T + +
Sbjct: 509 KESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568

Query: 221 ISACS 225
           +S  S
Sbjct: 569 LSVYS 573


>gi|297725255|ref|NP_001174991.1| Os06g0710800 [Oryza sativa Japonica Group]
 gi|53792631|dbj|BAD53645.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|215693375|dbj|BAG88757.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677390|dbj|BAH93719.1| Os06g0710800 [Oryza sativa Japonica Group]
          Length = 492

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 106/206 (51%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M   G+    +++MLLL AY++ G +     V+ +M + G++ DT   ++++ 
Sbjct: 140 ADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVR 199

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LY   G ++K  +++  M++     D+  YN LI+ +G+ G +     +F  + A+ +KP
Sbjct: 200 LYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKP 259

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ TW S +  + R    +R L  F  M + G YPD      +IS    + + +++  L 
Sbjct: 260 DITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLF 319

Query: 238 RTM-HKDMKTALPIY---FNLYGEKG 259
             M ++ +K +  +Y    ++YG+ G
Sbjct: 320 HGMRNRGLKESGAVYAVLVDIYGQYG 345



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 5/185 (2%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +FV I S       + +   +F  M+  G+  +   + +L+  Y + G+       + 
Sbjct: 296 PKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVA 355

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +    L+    +   + N Y + G  E+   VL  ME      ++   N+LIN +G  G
Sbjct: 356 ALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAG 415

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   + Q +    + PDVVT+T+ + A+ R K + +  E+++EM  AGC PD    +
Sbjct: 416 RHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKFEKVSEVYKEMEGAGCTPDRKARE 475

Query: 219 VLISA 223
           +L  A
Sbjct: 476 MLNDA 480



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 18/208 (8%)

Query: 30  SHFMLINFLLLQHTPN-------LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSH 77
           +H  L + LLLQ   +        ++ + + Y       D+  V  EMKR GI      +
Sbjct: 135 AHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGY 194

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
             L+  Y   G   K   +I +M + G++ D  + N +++ +G+ GQ     +V   M  
Sbjct: 195 STLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCA 254

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD---VVTWTSRLAAYSRKKL 194
                DI+T+N LI  + R G  ++    F ++  + + PD    VT  SRL    +   
Sbjct: 255 EGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGK--- 311

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +    ++F  M + G    G    VL+ 
Sbjct: 312 WDEIKKLFHGMRNRGLKESGAVYAVLVD 339



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 71/153 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  +M+  G+ P+  ++  L+ A ++ G   + E ++ +M + GL+PD    N++L    
Sbjct: 73  LLADMQAAGLRPSGAAYARLIRALARAGRTLEAEALLLEMRRLGLRPDAAHYNALLEGLL 132

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
                   + +L  M     A +  TY +L+N Y R G +E    +   +  + ++ D  
Sbjct: 133 STAHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTA 192

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +++ +  Y    ++++  ++  EM + G   D
Sbjct: 193 GYSTLVRLYRDNGMWKKATDLIMEMQELGVELD 225



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 2/181 (1%)

Query: 45  NLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           N  +  F  Y   +DA  VF++M   G+ P + +   L+  + + GN  +       M +
Sbjct: 230 NGLIDTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQE 289

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G+ PD  +  ++++  G  G++++++++   M         + Y +L++IYG+ G    
Sbjct: 290 EGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRD 349

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
                 +L A+ L+     +     AY+++ L  + + + + M   G  P+     +LI+
Sbjct: 350 AHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLIN 409

Query: 223 A 223
           A
Sbjct: 410 A 410


>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
 gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
 gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
          Length = 499

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 98/183 (53%), Gaps = 4/183 (2%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            + A   FE+MK +    PT+ ++ +LL A+++ G+  + + +   + +S + PD +  N
Sbjct: 179 LAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYN 238

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L+ YG+ G  ++ME VL  M+      D+ T+NILI+ YGR    +KME +F+SL   
Sbjct: 239 GVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRS 298

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI---SACSSEDQI 230
           + +P   T+ S +  Y R +L  +   + E+M + G  P+  T + LI   + C    + 
Sbjct: 299 KERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKA 358

Query: 231 EQV 233
            QV
Sbjct: 359 RQV 361



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 75/146 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+++    ++P + ++  +L AY K G + + E V+ +M  +  +PD    N +++ YG
Sbjct: 221 LFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYG 280

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R   F+KME+V  ++ +        T+N +I  YGR    EK E + + +     KP+ V
Sbjct: 281 RKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYV 340

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMI 206
           T    +  Y+      +  ++F+E++
Sbjct: 341 TQECLIIMYAHCDCVSKARQVFDELV 366



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 24/198 (12%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML--NLYGR---------LGQFEKM 128
           L++   + G +     + +QM  SG KPDT V NS++  +L+ R         LG FEKM
Sbjct: 130 LISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKALAKALGYFEKM 189

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           +     +E+      I TYNIL+  + + G  ++++ LF+ L    + PDV T+   L A
Sbjct: 190 K----CIERCQ--PTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDA 243

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQV-TTLVRTMHKDM 244
           Y +  + +    +   M    C PD  T  +LI +   +   D++EQV  +L+R+  +  
Sbjct: 244 YGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPT 303

Query: 245 KTALPIYFNLYGEKGVAR 262
               P + ++    G AR
Sbjct: 304 H---PTFNSMITNYGRAR 318



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 93/190 (48%), Gaps = 5/190 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAY----SKTGNVAKCEGVINQMH-KSGLKPDTFVI 112
           A  +F +M+  G  P    +  L+ A+     KT  +AK  G   +M      +P     
Sbjct: 143 AMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTY 202

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +L  + + G  ++++ +   +++   + D+ TYN +++ YG+ G I++ME +   + +
Sbjct: 203 NILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKS 262

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            + +PDV+T+   + +Y RK+ + +  ++F+ ++ +   P   T   +I+        E+
Sbjct: 263 TQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREK 322

Query: 233 VTTLVRTMHK 242
             ++V  M +
Sbjct: 323 AESVVEKMEE 332



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 79/186 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  +V   MK     P + +  +L+ +Y +     K E V   + +S  +P     NSM+
Sbjct: 252 EMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMI 311

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YGR    EK E V+  ME+  +  +  T   LI +Y     + K   +F  L   + K
Sbjct: 312 TNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTK 371

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             + +  S L AY    L+     + +  +     P+G T K+L  A +  +    V  L
Sbjct: 372 VHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYTKANDKLLVQKL 431

Query: 237 VRTMHK 242
           ++ M+K
Sbjct: 432 LKRMNK 437



 Score = 41.2 bits (95), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 120 GRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           GR   + +  +V   M+K   Y AD   Y+ LI++ GR G I     LF  +     KPD
Sbjct: 99  GRRDAWLQCLDVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPD 158

Query: 179 VVTWTSRLAAY----SRKKLYRRCLEIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQV 233
              + S + A+     + K   + L  FE+M     C P   T  +L+ A +     +QV
Sbjct: 159 TSVYNSLIGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQV 218

Query: 234 TTLVRTMHKDMKTALPIYFN----LYGEKGVAR 262
             L + + + + +     +N     YG+ G+ +
Sbjct: 219 DMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIK 251



 Score = 40.4 bits (93), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 7/188 (3%)

Query: 33  MLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L+     Q  P++  F   I        F     VF+ + R    PT  +   ++T Y 
Sbjct: 256 VLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYG 315

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           +     K E V+ +M + G KP+      ++ +Y       K  +V   +        +S
Sbjct: 316 RARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTKVHLS 375

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           + N ++  Y   G   + + L  +   + + P+  T+     AY++        ++ + M
Sbjct: 376 SLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYTKANDKLLVQKLLKRM 435

Query: 206 IDAGCYPD 213
              G  P+
Sbjct: 436 NKQGIVPN 443


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 8/215 (3%)

Query: 61  VFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +F+ M+R +   P    H +++T   + G + KC  V ++M  +G+    +   +++N Y
Sbjct: 120 LFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAY 179

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPD 178
           GR GQF    E+L  M++   +  I TYN +IN   RGG   E + GLF  +  + ++PD
Sbjct: 180 GRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPD 239

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           V+T+ + L A + + L      +F  M ++G  PD  T   L+      +++E+V+ L+R
Sbjct: 240 VITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLR 299

Query: 239 TMH-----KDMKTALPIYFNLYGEKGVARSNLGQY 268
            M       D+ T+  +    Y E G  +  +G +
Sbjct: 300 EMECGGNLPDI-TSYNVLLEAYAELGSIKEAMGVF 333



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F EM+  GI P + ++  LL A +  G   + E V   M++SG+ PD    + ++  +
Sbjct: 226 GLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTF 285

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+L + EK+ E+L  ME G    DI++YN+L+  Y   G I++  G+F+ + A     + 
Sbjct: 286 GKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANA 345

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T++  L  Y +   Y    ++F EM  +   PD GT  +LI         ++V TL   
Sbjct: 346 ATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHD 405

Query: 240 MHKD 243
           M ++
Sbjct: 406 MAEE 409



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 93/182 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EM+  G  P + S+ +LL AY++ G++ +  GV  QM  +G   +    + +LNLYG
Sbjct: 297 LLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYG 356

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+++ + ++   M+  +   D  TYNILI ++G GG+ +++  LF  +  + ++P++ 
Sbjct: 357 KHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQ 416

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A  +  LY    +I   M + G  P       +I A       E+   +  TM
Sbjct: 417 TYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTM 476

Query: 241 HK 242
           ++
Sbjct: 477 NE 478



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 2/194 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  VF  M   GI P + ++  L+  + K   + K   ++ +M   G  PD    N +
Sbjct: 257 DEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVL 316

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  Y  LG  ++   V   M+     A+ +TY++L+N+YG+ G  + +  LF  +     
Sbjct: 317 LEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNT 376

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD  T+   +  +     ++  + +F +M +    P+  T + LI AC      E    
Sbjct: 377 DPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKK 436

Query: 236 LVRTMHKDMKTALP 249
           ++  +H + K  +P
Sbjct: 437 IL--LHMNEKGVVP 448



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 80/152 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +F  M  +G  PT++++  L+ A+++ G   + E ++++M++SGLK D    N 
Sbjct: 466 YEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNG 525

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + GQ+E+  +    MEK +   +  T   +++IY   G +++ E  FQ + A  
Sbjct: 526 VIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASG 585

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + P V+ +   LA Y++         + + MI
Sbjct: 586 ILPSVMCYCMMLALYAKNDRLNDAYNLIDAMI 617



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 107/241 (44%), Gaps = 19/241 (7%)

Query: 12  CVAQRAPHSWNFNYLPYPSHFMLINFLLLQ----------HTPNLFVFIFSI--YFSDAH 59
           CVA  A +S   N       +  +  L L+           T N+ + +F    YF +  
Sbjct: 341 CVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVV 400

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F +M    + P M+++  L+ A  K G     + ++  M++ G+ P +     ++  +
Sbjct: 401 TLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAF 460

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+   +E+   +   M +      + TYN LI+ + RGG  ++ E +   +    LK DV
Sbjct: 461 GQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDV 520

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSS------EDQIEQ 232
            ++   + A+ +   Y   ++ + EM  A C P+  T + ++S  CS+      E+Q ++
Sbjct: 521 HSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQE 580

Query: 233 V 233
           +
Sbjct: 581 I 581



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 10/210 (4%)

Query: 59  HAVFE---EMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINS 114
           HA  E    MK+  ++P++ ++  ++ A ++ G +     G+  +M   G++PD    N+
Sbjct: 186 HASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNT 245

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L      G  ++ E V   M +     DI+TY+ L+  +G+   +EK+  L + +    
Sbjct: 246 LLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGG 305

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD+ ++   L AY+     +  + +F +M  AGC  +  T  VL++      + + V 
Sbjct: 306 NLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVR 365

Query: 235 TL-----VRTMHKDMKTALPIYFNLYGEKG 259
            L     V     D  T   I   ++GE G
Sbjct: 366 DLFLEMKVSNTDPDAGT-YNILIQVFGEGG 394



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 73/167 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF +M+  G      ++ +LL  Y K G       +  +M  S   PD    N ++
Sbjct: 328 EAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILI 387

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++G  G F+++  +   M + +   ++ TY  LI   G+GG  E  + +   +  K + 
Sbjct: 388 QVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVV 447

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           P    +T  + A+ +  LY   L +F  M + G  P   T   LI A
Sbjct: 448 PSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHA 494


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 95/189 (50%), Gaps = 1/189 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           +  A A+FE+M   G++PT+ ++ ++L  Y K G +  K  G++++M   GL  D F  +
Sbjct: 225 YERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCS 284

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++  GR G  ++ +E    ++   YA    TYN L+ ++G+ G   +   + + +   
Sbjct: 285 TVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDN 344

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PD VT+   +AAY R   Y     + + M + G  P+  T   +I+A     Q+++ 
Sbjct: 345 NCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKA 404

Query: 234 TTLVRTMHK 242
            +L   M +
Sbjct: 405 LSLYDQMKE 413



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 3/191 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +S+A ++ +EM+     P   ++  L+ AY + G   +   +I+ M ++G+
Sbjct: 322 LQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGI 381

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KP+     +M+N YGR  Q +K   +   M++   A ++ TYN ++ + G+    E+M  
Sbjct: 382 KPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMK 441

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +   +      P+ +TW + L+    K +++    +F+EM   G  PD  T   LI+A  
Sbjct: 442 ILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASG 501

Query: 224 -CSSEDQIEQV 233
            C S+   E++
Sbjct: 502 RCGSDIDAEKI 512



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 107/219 (48%), Gaps = 4/219 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            ++ + ++ +  A+ + M   GI P   ++  ++ AY +   V K   + +QM +SG  P
Sbjct: 359 AYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAP 418

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +    N++L + G+  Q E+M ++L  M+    A +  T+N ++++ G  G  + ++ +F
Sbjct: 419 NVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVF 478

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           Q + +   +PD  T+ + + A  R        +I++EM++AG  P   T   L++A +  
Sbjct: 479 QEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARR 538

Query: 228 DQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKGVAR 262
                  ++++ M     K  +T+  +  N Y + G  +
Sbjct: 539 GDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVK 577



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 1/171 (0%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L +YS+ G   +   +  +M++SGL P     N ML++YG++G+ + K+  +L
Sbjct: 209 VRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLL 268

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I+  GR G +++ +  F  L ++   P  VT+ + L  + + 
Sbjct: 269 DEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKA 328

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +Y   L I +EM D  C PD  T   L++A       E+   L+ TM ++
Sbjct: 329 GIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTEN 379



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 35/220 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA-------------------------- 91
           A +V ++MK  G  P+  S+ L+L +Y+K G V                           
Sbjct: 544 AESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLIL 603

Query: 92  ---KC------EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
              KC      E     + K G KPD  V NSML+++ R    ++  E++  +++     
Sbjct: 604 ANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQP 663

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+ TYN L+++Y RGG   K E + + L     K D++++ + +  + R+ L    L   
Sbjct: 664 DLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTL 723

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            EMI  G  P   T    +   +++    ++  ++  M K
Sbjct: 724 SEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTK 763



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 89/180 (49%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F+ +++ G  P +     +L+ +S+     +   +++ + + GL+PD    NS+++LY 
Sbjct: 617 AFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYA 676

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+  K EE+L  ++     +D+ +YN +I  + R G + +       + ++ ++P +V
Sbjct: 677 RGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIV 736

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + +  Y+ K ++    E+   M    C P+  T K+++       + ++    V T+
Sbjct: 737 TYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEAMDFVSTI 796



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 9/213 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +++EM   G TP++ ++  LL A ++ G+    E VI  M   G KP     + +L
Sbjct: 508 DAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLIL 567

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF----IEKMEGLFQSLPA 172
           N Y + G  + +  +    EK  Y   I    +L+       F    +  ME  FQ+L  
Sbjct: 568 NSYAKGGYVKGINRI----EKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQK 623

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
              KPD+V + S L+ +SRK ++ R  EI   + + G  PD  T   L+   +   +  +
Sbjct: 624 HGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWK 683

Query: 233 VTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
              ++R +      +  I +N    KG  R  L
Sbjct: 684 AEEILRELQNSGDKSDLISYNTV-IKGFCRQGL 715



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 81/186 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F  +K  G  P   ++  LL  + K G  ++   ++ +M  +   PD    N 
Sbjct: 296 LDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNE 355

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R G +E+   ++  M +     +  TY  +IN YGR   ++K   L+  +    
Sbjct: 356 LVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESG 415

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+ + L    +K      ++I  +M   GC P+  T   ++S C ++   + V 
Sbjct: 416 CAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVK 475

Query: 235 TLVRTM 240
            + + M
Sbjct: 476 RVFQEM 481



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 68/160 (42%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +MK  G  P   +   +L+     G     + V  +M   G +PD    N+++   GR G
Sbjct: 445 DMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCG 504

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
                E++   M +  +   ++TYN L+N   R G     E + + +  K  KP   +++
Sbjct: 505 SDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYS 564

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             L +Y++    +    I +++ D   +P     + LI A
Sbjct: 565 LILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILA 604



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 1/127 (0%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D   +  M  + GR  Q     ++   +    Y+ D+  Y  +++ Y R G  E+   +F
Sbjct: 173 DNQAVELMARILGRESQHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAIF 232

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           + +    L P +VT+   L  Y +  + + + L + +EM   G   D  T   +ISAC  
Sbjct: 233 EKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGR 292

Query: 227 EDQIEQV 233
           E  +++ 
Sbjct: 293 EGLLDEA 299



 Score = 38.9 bits (89), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  E++  G    + S+  ++  + + G + +    +++M   G++P     N+ + 
Sbjct: 684 AEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVG 743

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIEKME 164
            Y   G F +++EVL+ M K     +  TY I+++ Y +   F E M+
Sbjct: 744 GYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEAMD 791


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  V  EM++ G+ P  +++ LL+  Y+  G       V+ +M  S ++P+++V + 
Sbjct: 327 LKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSR 386

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y   G+++K  +VL  M+      D   YN++I+ +G+   ++     F+ + ++ 
Sbjct: 387 ILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEG 446

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD+VTW + +  + +   +    E+F EM   G  P   T  ++I++   + + EQVT
Sbjct: 447 IPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVT 506

Query: 235 TLVRTMHKDMKTALPIYF----NLYGEKG 259
             +  M         I +    ++YG+ G
Sbjct: 507 AFLSKMQSQGLQPNSITYTTLVDVYGKSG 535



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 35/201 (17%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM++ G +P + ++ +++ +  +     +    +++M   GL+P++    ++++
Sbjct: 470 AEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVD 529

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE---------KMEGLFQ 168
           +YG+ G+F    E L  ++   +    + YN LIN Y + G  E           EGL  
Sbjct: 530 VYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTP 589

Query: 169 SLPA--------------------------KRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           SL A                            ++PDVVT+T+ + A  R + +++   ++
Sbjct: 590 SLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVY 649

Query: 203 EEMIDAGCYPDGGTAKVLISA 223
           EEM+ +GC PD     +L SA
Sbjct: 650 EEMVASGCTPDRKARAMLRSA 670



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 78/153 (50%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P   + + ++ A   +G   + E +  ++ ++GL+P T   N++L  Y R G  +  
Sbjct: 271 GLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDA 330

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E V++ MEK     D  TY++LI++Y   G  E    + + + A  ++P+   ++  LA 
Sbjct: 331 EFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILAN 390

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           Y  K  +++  ++ ++M  +G  PD     V+I
Sbjct: 391 YRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMI 423



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 11/225 (4%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN +VF  I + Y     +  +  V ++MK  G+ P    + +++  + K   +      
Sbjct: 379 PNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMAT 438

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M   G+ PD    N++++ + + G+ +  EE+ + M++  Y+  I+TYNI+IN  G 
Sbjct: 439 FERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGE 498

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               E++      + ++ L+P+ +T+T+ +  Y +   +   +E  E +   G  P    
Sbjct: 499 QQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTM 558

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKT----ALPIYFNLYGE 257
              LI+A +     E      R M  +  T    AL    N +GE
Sbjct: 559 YNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGE 603



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 2/205 (0%)

Query: 41  QHTPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  Y     A A FE M   GI P + +   L+  + K+G     E + +
Sbjct: 416 RHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFS 475

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M + G  P     N M+N  G   ++E++   L+ M+      +  TY  L+++YG+ G
Sbjct: 476 EMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSG 535

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
                    + L +   KP    + + + AY+++ L    +  F  M   G  P      
Sbjct: 536 RFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALN 595

Query: 219 VLISACSSEDQIEQVTTLVRTMHKD 243
            LI+A   + +  +   +++ M ++
Sbjct: 596 SLINAFGEDRRDAEAFAVLQYMKEN 620



 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/135 (17%), Positives = 55/135 (40%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++  +SK G+  +    +     +GL P    + +++   G  G+  + E +   + +  
Sbjct: 247 IIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENG 306

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                  YN L+  Y R G ++  E +   +    +KPD  T++  +  Y+    +    
Sbjct: 307 LEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESAR 366

Query: 200 EIFEEMIDAGCYPDG 214
            + +EM  +   P+ 
Sbjct: 367 IVLKEMEASNVQPNS 381



 Score = 40.8 bits (94), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/183 (17%), Positives = 72/183 (39%), Gaps = 2/183 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK--CEGVINQMHKSGLKPDTFVINSMLNL 118
           +  +M+R G  P   ++  ++   +++  +     + +  ++    ++ D  ++N ++  
Sbjct: 191 LMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVG 250

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           + + G   +    L   +        ST   +I   G  G   + E LF+ +    L+P 
Sbjct: 251 FSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPR 310

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
              + + L  Y R    +    +  EM  AG  PD  T  +LI   +   + E    +++
Sbjct: 311 TRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLK 370

Query: 239 TMH 241
            M 
Sbjct: 371 EME 373


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 85/163 (52%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EM+  G +P +  +  L+ AY+  GNV    GV  QM + G  PD    +++L +YG
Sbjct: 245 LLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYG 304

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G FE++  + + M++ S    ++TYN LI ++G GG+ ++   LF  +    +KPD  
Sbjct: 305 NQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDA 364

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+++ L+   R  L R   +I + M+     P    +  LIS+
Sbjct: 365 TYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISS 407



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M   G+     ++  L+  ++ +  + + E ++ +M   G  PD    NS++ 
Sbjct: 207 AAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIE 266

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G       V   M++G  A D+ TY+ L+ IYG  G  E++  LF  +      P
Sbjct: 267 AYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPP 326

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            V T+ S +  +     ++  + +F +M+D+G  PD  T   L+S C
Sbjct: 327 TVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVC 373



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 47  FVFIFSIYF--SDAHA---VFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           F  IF  +   SD H    +F+ M+R     PT   + +++    + G + KC  +   M
Sbjct: 49  FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDM 108

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF- 159
            ++ +K + +   +++N YGR GQ+E    +L  M+K     ++ TYN ++N   +GG  
Sbjct: 109 PENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLD 168

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            E +  LF  +  + ++PD++T+ + L+A S + L  +   +F+ M ++G   D  T K 
Sbjct: 169 WEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKS 228

Query: 220 LISACSSEDQIEQVTTLVRTMHKD 243
           L+   +  +Q+ +V  L+R M  +
Sbjct: 229 LVDTFAGSNQLGRVEELLREMEDE 252



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 2/197 (1%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVINSMLNLYGRLGQFEKMEEV 131
           TM+   L+   ++   +  +   +   M +    KP   +   M+ + GR G  EK  E+
Sbjct: 45  TMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEI 104

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
              M +     ++  +  LIN YGR G  E    L   +  +R++P+++T+ + L A S+
Sbjct: 105 FEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSK 164

Query: 192 KKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
             L +   L +F +M   G  PD  T   L+SACSS   +EQ   + +TM++    A  +
Sbjct: 165 GGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAV 224

Query: 251 YFNLYGEKGVARSNLGQ 267
            +    +     + LG+
Sbjct: 225 TYKSLVDTFAGSNQLGR 241



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 7/205 (3%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FE+M    +   + +   L+ AY + G       ++ +M K  ++P+    N++LN   
Sbjct: 104 IFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACS 163

Query: 121 RLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           + G  +E +  +   M       D+ TYN L++     G +E+   +F+++    +  D 
Sbjct: 164 KGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADA 223

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+ S +  ++      R  E+  EM D G  PD      LI A +    +     + + 
Sbjct: 224 VTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQ 283

Query: 240 MHK-----DMKTALPIYFNLYGEKG 259
           M +     D++T       +YG +G
Sbjct: 284 MQRGGCAPDVET-YSTLLRIYGNQG 307



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 71/156 (45%), Gaps = 1/156 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA   +  ++  G+ P + ++  L+  Y+K G   +    +  M+K+G +     +NS
Sbjct: 414 YKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNS 473

Query: 115 MLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++  Y ++G  ++  E  + + +K     D  T+  L+ +Y   G +E+ +  F  +   
Sbjct: 474 VMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKET 533

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
              P    +   L+   R+  +    ++ +EMI AG
Sbjct: 534 SKVPGARVYCLLLSLCVRRSKWDYATQLLDEMIAAG 569



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 35/186 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F    ++F +MK L   PT+ ++  L+  + + G   +   + + M  SG+KPD    ++
Sbjct: 309 FEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSA 368

Query: 115 MLNLYGRLGQFEKMEEV----LT--------------------AMEKGSYAA-------- 142
           +L++ GR G   +  ++    LT                    AM K +  +        
Sbjct: 369 LLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAG 428

Query: 143 ---DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
               +S Y+ LI  Y +GG   +      ++     +  V +  S + AYS+  L+   L
Sbjct: 429 LDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEAL 488

Query: 200 EIFEEM 205
           E F E+
Sbjct: 489 EFFSEL 494


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 2/198 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  EM R G+ P + ++  L+    K GN+ +     +QMH  GL+P+     S
Sbjct: 324 FHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTS 383

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + + G  ++   +   M +  +   I TYN L+N +   G +E+  GL + +  K 
Sbjct: 384 LINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKG 443

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PDVV++++ +A + R +   R  ++  EM++ G  PD  T   LI     + ++ +  
Sbjct: 444 LSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEAC 503

Query: 235 TLVRTMHKDMKTALPIYF 252
            L + M    K+ LP  F
Sbjct: 504 DLFQEMLN--KSLLPDEF 519



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 90/186 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +   M   G+ P + ++ +++    + G + +  GV+ +M + G  PD    N++
Sbjct: 255 DEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTL 314

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y ++G F +   + + M +     D+ TY  LIN   + G + +    F  +  + L
Sbjct: 315 VNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGL 374

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+ VT+TS +  +S+K        I++EMI +G  P   T   L++      ++E+   
Sbjct: 375 RPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIG 434

Query: 236 LVRTMH 241
           L+R M 
Sbjct: 435 LLRGME 440



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           FEEM+R    P + ++  ++ AY K   + +   ++  M   GL+P+    N ++N   R
Sbjct: 226 FEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCR 285

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G+ E+   VL  M++  +A D  TYN L+N Y + G   +   L   +    L PDVVT
Sbjct: 286 VGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVT 345

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +TS +    +     R +E F++M   G  P+G T   LI+  S +  +++
Sbjct: 346 YTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDE 396



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 91/190 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A+ +++EM R G  PT+ ++  LL  +  +G + +  G++  M   GL PD    +
Sbjct: 393 FMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYS 452

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  + R  + ++  ++   M +   + D  TY+ LI        + +   LFQ +  K
Sbjct: 453 TIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNK 512

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD  T+TS +  Y ++      L + +EMI  G  PD  T  VLI+  + + +  + 
Sbjct: 513 SLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREA 572

Query: 234 TTLVRTMHKD 243
             L+  +  D
Sbjct: 573 KRLLLKLFYD 582



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 84/184 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V+ EM   G++  + S+ +L+  +   GN+        +M ++   P+    N+++ 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +L + ++  ++L +M       ++ TYN++IN   R G IE+  G+   +  K   P
Sbjct: 247 AYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAP 306

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+ + +  Y +   + + L +  EM+  G  PD  T   LI+       + +     
Sbjct: 307 DGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFF 366

Query: 238 RTMH 241
             MH
Sbjct: 367 DQMH 370



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 90/206 (43%), Gaps = 15/206 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +F+EM    + P   ++  L+  Y K G++ +   + ++M K G  PDT   N 
Sbjct: 499 LNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNV 558

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI---------------YGRGGF 159
           ++N   +  +  + + +L  +       +  TY+ LI                 +   G 
Sbjct: 559 LINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGL 618

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           + + + +F+S+  +  KP+   +   +  + R     +  ++++EM+D G  P   T   
Sbjct: 619 MNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIA 678

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMK 245
           L+ A  SE   EQ+  ++R + +  K
Sbjct: 679 LVKALYSEGMDEQLNLVIRDILRSCK 704



 Score = 44.7 bits (104), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 1/165 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVLTAMEK 137
           L++ + S    + K   +++    +G  P     N++L+   R  +     E+V   M  
Sbjct: 137 LVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIA 196

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
              + ++ +YNILI  +   G +E     F+ +   R  P+VVT+ + + AY + K    
Sbjct: 197 SGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDE 256

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             ++   M   G  P+  T  ++I+      +IE+ + ++  M +
Sbjct: 257 AFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDR 301


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 94/200 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA  + +EMK  G+ P + ++  L+  + K G++ +   ++++M ++G KPD    + +
Sbjct: 236 DDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCL 295

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    +  Q ++  +VL  MEK     D  TYN LIN  G+ G +     LF  + +K  
Sbjct: 296 ITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGC 355

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDVVT+++ + A  +         +FEEM   G  PD  T   +I+      Q++    
Sbjct: 356 NPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADR 415

Query: 236 LVRTMHKDMKTALPIYFNLY 255
           L   M     +   I +N +
Sbjct: 416 LFSEMRGKGLSPDVITYNAF 435



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 92/196 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FEE+K    TP + S+  L+ +  + G       V+ +M   G KP+ +  N+++
Sbjct: 27  EAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLV 86

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +  G+ GQF++   +L  M       D+ TYN LI+  G+ G + +   LF  +  +   
Sbjct: 87  DCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCV 146

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+ S +    +    ++ +E+ EEM   GC PD  T   LI+    + +  +   L
Sbjct: 147 PDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKL 206

Query: 237 VRTMHKDMKTALPIYF 252
            + M +  +    I F
Sbjct: 207 FQEMKRRGRKPDSITF 222



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  +F+ MK  G  P + ++  L+TA  K   V     +  +M   G++PD F   S
Sbjct: 340 LNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCS 399

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ + G+ GQ +  + + + M     + D+ TYN  +N  GRGG  ++   +F+ +    
Sbjct: 400 IITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESG 459

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L PDV T+ + L   S+ K       + +E+I+ GC  D
Sbjct: 460 LLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFD 498



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 94/189 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +  EM+  G  P ++++  L++   K G +++   +  +M + G  PDTF  NS
Sbjct: 95  FDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNS 154

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   G++G+ +K  E+L  ME+     D+ TY+ LI   G+ G   K   LFQ +  + 
Sbjct: 155 LIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRG 214

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KPD +T+T+ + A  +       LE+ +EM + G  P   T   LI+       + +  
Sbjct: 215 RKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAY 274

Query: 235 TLVRTMHKD 243
            L+  M ++
Sbjct: 275 NLLDEMKRN 283



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 35/219 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A+ + +EMKR G  P + ++  L+T   K   + +   V+ +M K G  PDT   N+++
Sbjct: 272 EAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLI 331

Query: 117 NLYGRLGQ-------FEKMEE------------VLTAMEKGSYAA--------------- 142
           N  G+ G        F++M+             ++TA+ K +                  
Sbjct: 332 NGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQ 391

Query: 143 -DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            D+ TY  +I + G+ G ++  + LF  +  K L PDV+T+ + L +  R   ++   +I
Sbjct: 392 PDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKI 451

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           FE+M ++G  PD  T   L+   S   +++    L++ +
Sbjct: 452 FEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKEL 490



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 7/187 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ F +   IY          A  + EEM+R G  P + ++  L+T   K G   K   +
Sbjct: 147 PDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKL 206

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M + G KPD+    ++++  G+ G+ +   E+L  M++      + TYN LI  +G+
Sbjct: 207 FQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGK 266

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G + +   L   +     KPDVVT++  +    +        ++ ++M   GC PD  T
Sbjct: 267 VGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTIT 326

Query: 217 AKVLISA 223
              LI+ 
Sbjct: 327 YNTLING 333



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +FE+MK  G+ P + ++  LL   SKT  V    G++ ++ + G   D+   + 
Sbjct: 445 FKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDE 504

Query: 115 MLNLYGRLGQFEKMEEVLT-AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            L +    G  ++  E+L  A  KG +    S+YN LI+   + G + +     + L  +
Sbjct: 505 CLEILTSWGNVDEAHELLQFANSKGLWPG-ASSYNALIDALAKAGRVSEAFNTLEDLKEQ 563

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
             KPD+V+++S ++A  +        E+ EEM   G
Sbjct: 564 GGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRG 599



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 76/172 (44%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           +P + ++  LL A +K G   + + +  ++  +   PD    + ++N  GR G++E   E
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           V+  M+      ++ TYN L++  G+ G  ++   L   +      PDV T+   ++   
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +         +F EM + GC PD  T   LI       + ++   L+  M +
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMER 177



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 8/219 (3%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+LF +   I          DA  +F EM+  G++P + ++   L +  + G   +   +
Sbjct: 392 PDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKI 451

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M +SGL PD    +++L    +  + +    +L  + +   A D   ++  + I   
Sbjct: 452 FEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTS 511

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +++   L Q   +K L P   ++ + + A ++           E++ + G  PD  +
Sbjct: 512 WGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVS 571

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIYFNL 254
              LISA     QI+    L+  M K  +K +   Y NL
Sbjct: 572 YSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNL 610



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           KG  + ++ TYN L+N   + G  E+ + LF+ L A +  PDVV+++  + +  R   + 
Sbjct: 2   KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             LE+  EM   GC P+  T   L+       Q ++   L+  M  +
Sbjct: 62  AALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDN 108



 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +AH + +     G+ P   S+  L+ A +K G V++    +  + + G KPD    +S+
Sbjct: 516 DEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSL 575

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           ++  G+ GQ +   E+L  M K        +Y+ L+
Sbjct: 576 ISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 97/183 (53%), Gaps = 2/183 (1%)

Query: 61  VFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +F+ M+R +   P    + +++T   + G + KC  V ++M  +G+    +V  +++N Y
Sbjct: 122 LFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAY 181

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPD 178
           GR GQF    E+L  M++   +  I TYN +IN   RGG   E + GLF  +  + ++PD
Sbjct: 182 GRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPD 241

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           V+T+ + L A + + L      +F  M ++G  PD  T   L+      +++E+V+ L+R
Sbjct: 242 VITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLR 301

Query: 239 TMH 241
            M 
Sbjct: 302 EME 304



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F EM+  GI P + ++  LL A +  G   + E V   M++SG+ PD    + ++  +
Sbjct: 228 GLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTF 287

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+L + EK+ E+L  ME G    DI++YN+L+  Y   G I++   +F+ + A     + 
Sbjct: 288 GKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANA 347

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T++  L  Y +   Y    +IF EM  +   PD GT  +LI         ++V TL   
Sbjct: 348 ATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHD 407

Query: 240 M 240
           M
Sbjct: 408 M 408



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 92/182 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EM+  G  P + S+ +LL AY++ G++ +   V  QM  +G   +    + +LNLYG
Sbjct: 299 LLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYG 358

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+++ + ++   M+  +   D  TYNILI ++G GG+ +++  LF  +  + ++P++ 
Sbjct: 359 KHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNME 418

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A  +  LY    +I   M + G  P       +I A       E+   +  TM
Sbjct: 419 TYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTM 478

Query: 241 HK 242
           ++
Sbjct: 479 NE 480



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 2/194 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  VF  M   GI P + ++  L+  + K   + K   ++ +M   G  PD    N +
Sbjct: 259 DEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVL 318

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  Y  LG  ++  +V   M+     A+ +TY++L+N+YG+ G  + +  +F  +     
Sbjct: 319 LEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNT 378

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD  T+   +  +     ++  + +F +M++    P+  T + LI AC      E    
Sbjct: 379 DPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKK 438

Query: 236 LVRTMHKDMKTALP 249
           ++  +H + K  +P
Sbjct: 439 IL--LHMNEKGIVP 450



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 81/152 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF  M  +G  PT++++   + A+++ G   + E ++++M++SGLK D    N 
Sbjct: 468 YEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNG 527

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + GQ+E+  +    MEK +   +  T  +++++Y   G +++ E  FQ + A  
Sbjct: 528 VIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASG 587

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + P V+ +   LA Y++         + +EMI
Sbjct: 588 ILPSVMCYCLMLALYAKNDRLNDAYNLIDEMI 619



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 9/200 (4%)

Query: 43  TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N+ + +F    YF +   +F +M    + P M+++  L+ A  K G     + ++  M
Sbjct: 384 TYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHM 443

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
           ++ G+ P +     ++  +G+   +E+   V   M +      + TYN  I+ + RGG  
Sbjct: 444 NEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLY 503

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++ E +   +    LK DV ++   + A+ +   Y   ++ + EM  A C P+  T +V+
Sbjct: 504 KEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVV 563

Query: 221 ISA-CS------SEDQIEQV 233
           +S  CS      SE+Q +++
Sbjct: 564 LSVYCSAGLVDESEEQFQEI 583



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 97/210 (46%), Gaps = 10/210 (4%)

Query: 59  HAVFE---EMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINS 114
           HA  E    MK+  ++P++ ++  ++ A ++ G +     G+  +M   G++PD    N+
Sbjct: 188 HASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNT 247

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L      G  ++ E V   M +     DI+TY+ L+  +G+   +EK+  L + + +  
Sbjct: 248 LLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGG 307

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD+ ++   L AY+     +  +++F +M  AGC  +  T  VL++      + + V 
Sbjct: 308 NLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVR 367

Query: 235 TL-----VRTMHKDMKTALPIYFNLYGEKG 259
            +     V     D  T   I   ++GE G
Sbjct: 368 DIFLEMKVSNTDPDAGT-YNILIQVFGEGG 396



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 72/167 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF +M+  G      ++ +LL  Y K G       +  +M  S   PD    N ++
Sbjct: 330 EAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILI 389

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++G  G F+++  +   M + +   ++ TY  LI   G+GG  E  + +   +  K + 
Sbjct: 390 QVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIV 449

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           P    +T  + A+ +  LY   L +F  M + G  P   T    I A
Sbjct: 450 PSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHA 496


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            + + MK  GI P   ++  L++   +     +  GV+ +M  +G  PD    N++L++Y
Sbjct: 257 GLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVY 316

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+  + ++  EVL  ME       I TYN LI+ Y R G +E    L   +  K +KPDV
Sbjct: 317 GKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDV 376

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            T+T+ L+ + +    +  ++IFEEM + GC P+  T   LI
Sbjct: 377 FTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALI 418



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 99/183 (54%), Gaps = 1/183 (0%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQM 100
           +T  +  F  +  + +A  VF++M+ +G  PT+ ++ ++L  Y K G    K  G++++M
Sbjct: 203 YTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRM 262

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             +G+ PD++  N++++   R   +E+   VL  M+   ++ D  TYN L+++YG+    
Sbjct: 263 KSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRS 322

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++   + Q +      P +VT+ S ++AY+R  L    LE+  +M++ G  PD  T   L
Sbjct: 323 KEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTL 382

Query: 221 ISA 223
           +S 
Sbjct: 383 LSG 385



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 96/177 (54%), Gaps = 5/177 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V +EM+  G  P++ ++  L++AY++ G +     + NQM + G+KPD F   ++L
Sbjct: 324 EAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLL 383

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRL 175
           + + + G+ +   ++   M       +I T+N LI ++G RG F E M+ +F+ +   + 
Sbjct: 384 SGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMK-VFEDIKTFQC 442

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQ 229
            PD+VTW + L+ + +  +      +F+EM  AG  P+  T   LIS+   C S DQ
Sbjct: 443 SPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQ 499



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 90/169 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +  +M   GI P + ++  LL+ + K G       +  +M   G KP+    N+
Sbjct: 357 LEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNA 416

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ ++G  G+F +M +V   ++    + DI T+N L++++G+ G   ++ G+F+ +    
Sbjct: 417 LIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAG 476

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             P+  T+ + +++YSR   + + + +++ M++AG  PD  +   +++A
Sbjct: 477 FVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAA 525



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 1/186 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A ++   + + G    + ++  ++TA++  G   +   V  +M + G KP     N +
Sbjct: 182 SAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVI 241

Query: 116 LNLYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           LN+YG++G  + KM  ++  M+    A D  TYN LI+   RG   E+  G+ + +    
Sbjct: 242 LNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAG 301

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD VT+ + L  Y + +  +  +E+ +EM   GC P   T   LISA + +  +E   
Sbjct: 302 FSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDAL 361

Query: 235 TLVRTM 240
            L   M
Sbjct: 362 ELKNQM 367



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 91/183 (49%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+ EE+    I P       L+   SK   + + E    ++ + G  PD   +N+M+++Y
Sbjct: 572 ALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIY 631

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR     K  E+L  M++G +   ++TYN L+ +Y R    E+ E + + + AK ++PD+
Sbjct: 632 GRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDI 691

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +++ + + AY R    R    +  EM ++G  PD  T    I++ +++    +   +V  
Sbjct: 692 ISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCY 751

Query: 240 MHK 242
           M K
Sbjct: 752 MIK 754



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 88/186 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +    F E+++ G +P + +   +++ Y +   VAK   +++ M + G  P     NS++
Sbjct: 604 ETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLM 663

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +Y R   FE+ EE+L  +       DI +YN +I  Y R G +     +   +      
Sbjct: 664 YMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPA 723

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD++T+ + +A+Y+   ++   +++   MI  GC P+  T   ++      ++ ++ +  
Sbjct: 724 PDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMF 783

Query: 237 VRTMHK 242
           V  + K
Sbjct: 784 VNNLRK 789



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 7/216 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++   VFE++K    +P + +   LL+ + + G  ++  GV  +M ++G  P+    N+
Sbjct: 427 FTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNT 486

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++   V   M +     D+S+YN ++    RGG  ++ E +   +   R
Sbjct: 487 LISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGR 546

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+ +T+ S L AY+  K   R   + EE+      P     K L+   S  D + +  
Sbjct: 547 CKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETE 606

Query: 235 TLV-----RTMHKDMKTALPIYFNLYGEKG-VARSN 264
                   R    D+ T L    ++YG +  VA++N
Sbjct: 607 RAFLELRQRGFSPDI-TTLNAMVSIYGRRQMVAKAN 641



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 91/184 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEM+  G  P + +   L+  +   G   +   V   +      PD    N++L+
Sbjct: 395 AVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLS 454

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M++  +  +  T+N LI+ Y R G  ++   +++ +    + P
Sbjct: 455 VFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNP 514

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ ++ + LAA +R  L+++  ++  EM D  C P+  T   L+ A ++  +IE++  L 
Sbjct: 515 DLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALA 574

Query: 238 RTMH 241
             ++
Sbjct: 575 EEIY 578



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 88/187 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+   VF+EMKR G  P   +   L+++YS+ G+  +   V  +M ++G+ PD    N++
Sbjct: 463 SEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAV 522

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L    R G +++ E+VL  M+ G    +  TY  L++ Y  G  IE+M  L + + +  +
Sbjct: 523 LAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGII 582

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P  V   + +   S+  L       F E+   G  PD  T   ++S       + +   
Sbjct: 583 EPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANE 642

Query: 236 LVRTMHK 242
           ++  M +
Sbjct: 643 ILDCMKR 649



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 35/236 (14%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A AV++ M   G+ P + S+  +L A ++ G   + E V+ +M     KP+     S
Sbjct: 497 FDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCS 556

Query: 115 MLNLYGRLGQFEKM-----------------------------------EEVLTAMEKGS 139
           +L+ Y    + E+M                                   E     + +  
Sbjct: 557 LLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRG 616

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           ++ DI+T N +++IYGR   + K   +   +      P + T+ S +  YSR   + R  
Sbjct: 617 FSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSE 676

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
           EI  E++  G  PD  +   +I A     ++   + ++  M +       I +N +
Sbjct: 677 EILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTF 732



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 1/164 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++++   K G V+    +++ + K G   D +   SM+  +   G++ +   V   ME+ 
Sbjct: 170 VIISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEV 229

Query: 139 SYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                + TYN+++N+YG+ G    KM GL   + +  + PD  T+ + ++   R  LY  
Sbjct: 230 GCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEE 289

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
              + +EM  AG  PD  T   L+       + ++   +++ M 
Sbjct: 290 AAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEME 333



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 53/109 (48%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           ++++  S  F  +  +  E+   GI P + S+  ++ AY + G +     V+++M +SG 
Sbjct: 663 MYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGP 722

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            PD    N+ +  Y     F +  +V+  M K     + STYN +++ Y
Sbjct: 723 APDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWY 771


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 3/191 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +FEEM   G  P++ ++ +++   +K+GN      + N M  +G  PD    + M
Sbjct: 189 SEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIM 248

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + + G++G  ++ E +   ME+  +  D   Y ++++++G+    E+    +Q +    L
Sbjct: 249 MEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGL 308

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+V    S L +Y R + +     + E M   G  P   T  +L+S+C++  Q  QV  
Sbjct: 309 TPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLSSCTASAQHHQVVN 368

Query: 236 LVRTMHKDMKT 246
           L   MH+  +T
Sbjct: 369 L---MHRSSET 376



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 98/210 (46%), Gaps = 1/210 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     + +EM+R G  P + ++  L+ AY +   + +   +  QM + G  PD     +
Sbjct: 83  FEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCT 142

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++L+ + G  +   ++   M++  +  D  TY+++I+  G+ G + +   LF+ +  + 
Sbjct: 143 LVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERG 202

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P +VT+   +   ++   Y   ++++ +M DAG +PD  T  +++        +++  
Sbjct: 203 FAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAE 262

Query: 235 TLVRTMHK-DMKTALPIYFNLYGEKGVARS 263
            +   M +       PIY  +    G AR+
Sbjct: 263 LMFNEMEQAGWVPDAPIYGVMVDMWGKARN 292



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/187 (18%), Positives = 89/187 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  ++++M++ G  P   ++ +++    K G V++   +  +M + G  P     N
Sbjct: 152 FHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYN 211

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++L  + G +    ++   M+   +  D  TY+I++ + G+ G +++ E +F  +   
Sbjct: 212 IIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQA 271

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PD   +   +  + + +   R LE +++M+D+G  P+   +  L+ +     Q +  
Sbjct: 272 GWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLA 331

Query: 234 TTLVRTM 240
             ++ TM
Sbjct: 332 FGVIETM 338



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 79/169 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  +F +M+  G +P   ++  L+  +SK G       +  +M ++G +PDTF  +
Sbjct: 117 FLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYS 176

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++  G+ G+  +  ++   M +  +A  + TYNI+I++  + G       L+  +   
Sbjct: 177 VIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDA 236

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              PD VT++  +    +    +    +F EM  AG  PD     V++ 
Sbjct: 237 GFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVD 285



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 64/139 (46%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+ + GR   FE    +L  M +      + TYN LI+ YGR  F+ 
Sbjct: 60  QEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLG 119

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F  +  +   PD VT+ + +  +S+   +   ++++++M  AG  PD  T  V+I
Sbjct: 120 EAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVII 179

Query: 222 SACSSEDQIEQVTTLVRTM 240
                  ++ +   L   M
Sbjct: 180 HCLGKAGKVSEALKLFEEM 198



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 63/137 (45%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           +  N   C  ++ +M + G +P     N +++ YGR     +   +   M++   + D  
Sbjct: 79  RARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRV 138

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TY  L++++ + GF +    ++Q +     +PD  T++  +    +       L++FEEM
Sbjct: 139 TYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEM 198

Query: 206 IDAGCYPDGGTAKVLIS 222
           ++ G  P   T  ++I 
Sbjct: 199 VERGFAPSLVTYNIIID 215



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT--------------AMEKGSYA 141
           V N + +   +PDT V  S +N    L  F  + EVL               A E+  Y 
Sbjct: 8   VCNILRQLNWRPDTLVALSRVNR--TLSAFH-INEVLKHQKESGLALKFFDWAKEQEGYK 64

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            D+ TY  +I I GR    E    L Q +  +  +P VVT+   + AY R       + I
Sbjct: 65  HDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRI 124

Query: 202 FEEMIDAGCYPDGGTAKVLIS 222
           F +M + GC PD  T   L+ 
Sbjct: 125 FYQMQEEGCSPDRVTYCTLVD 145



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  +F EM++ G  P    + +++  + K  N  +      +M  SGL P+  + N
Sbjct: 257 HLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISN 316

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           S+L  Y R+ QF+    V+  M+       + T+ IL++
Sbjct: 317 SLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLS 355


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 93/179 (51%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  +K  G++PT  ++  ++  ++K GN+AK   ++ +M K G+ P+  +   +++ Y R
Sbjct: 180 FHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYAR 239

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G F    +V   M       DI  YNIL++ + + G ++K  G+ +++ A RL P + T
Sbjct: 240 GGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIET 299

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +TS L  Y +    ++ LE+F+ +  AG  P   +   L+S  +   Q+E    ++  M
Sbjct: 300 YTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEM 358



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 2/200 (1%)

Query: 45  NLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           N+ V  F  +     A  V E ++   + PT++++  +L  Y K GN+ K   V +++  
Sbjct: 266 NILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKT 325

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
           +GL+P     NS+L+   +  Q E    +L  M       +  +Y  L   Y R G +EK
Sbjct: 326 AGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEK 385

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
             G+FQ +  + L  D+V + + L A  +    +R  E+F+++ DAG   +  T   ++ 
Sbjct: 386 AFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLD 445

Query: 223 ACSSEDQIEQVTTLVRTMHK 242
             + + ++ +   L+  M K
Sbjct: 446 GWARKGELSKARDLLNDMQK 465



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 88/183 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM + G++P    + +++  Y++ G+      V   M  +GLKPD  + N +++ + 
Sbjct: 214 ILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFC 273

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ +K   VL  +E       I TY  +++ Y +GG I+K   +F  +    L+P VV
Sbjct: 274 KAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVV 333

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ S L+  ++ +       +  EM+  G  P+  +   L    +    +E+   + + M
Sbjct: 334 SYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRM 393

Query: 241 HKD 243
            K+
Sbjct: 394 KKE 396



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 84/182 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+ +K  G+ P + S+  LL+  +K   +     ++N+M  +G+ P+     ++   Y 
Sbjct: 319 VFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYA 378

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G  EK   +   M+K + A DI  Y  L+    + G +++   +FQ +    LK + +
Sbjct: 379 RAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRI 438

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + L  ++RK    +  ++  +M   G + D       I AC      E+VT  +  M
Sbjct: 439 TYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVM 498

Query: 241 HK 242
            +
Sbjct: 499 RE 500



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 7/177 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+ ++   I+          A A  EEM   GI         +++ Y+  GN    E  
Sbjct: 50  PNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHW 109

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +     L P   V NS++  Y + G  E +E +L  ME+  +  ++  Y  ++N +  
Sbjct: 110 FEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAE 169

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
               EK    F  L A  L P   T+   +  +++     + L+I EEM   G  P+
Sbjct: 170 IRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPN 226



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 84/189 (44%), Gaps = 5/189 (2%)

Query: 40  LQHTPNLFVFIFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           +Q    +F  I S Y S      A   FE+ K   + P    +  ++ AY + GN+   E
Sbjct: 83  IQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVE 142

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ QM + G + +  +  ++LN +  +   EK       ++    +   +TY  ++ ++
Sbjct: 143 ALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLF 202

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G + K   + + +    + P+ + +   +  Y+R   +    +++E+M+ AG  PD 
Sbjct: 203 TKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDI 262

Query: 215 GTAKVLISA 223
               +L+ A
Sbjct: 263 VIYNILVHA 271



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 81/174 (46%), Gaps = 3/174 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+ MK+  +   + ++  LL A  K+G + +   V  Q+  +GLK +     +ML+
Sbjct: 386 AFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLD 445

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G+  K  ++L  M+K  +  D   Y   I    R G  E++      +  K+L+ 
Sbjct: 446 GWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEV 505

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS---ACSSED 228
           +  T+T+ +  +       + +  +E+   +G   D   +  L+S   +C+S++
Sbjct: 506 NARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLLSGLISCASQN 559



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 76/185 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A FE M+   I P +  +  L+ AY++  ++        +M   G++ +  V  S+++
Sbjct: 36  ARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIIS 95

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E  E      +  +       YN ++  Y + G +E +E L   +  +  + 
Sbjct: 96  GYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQG 155

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++  +T+ L  ++  +   +CL  F  +   G  P   T   ++   +    + +   ++
Sbjct: 156 NLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDIL 215

Query: 238 RTMHK 242
             M K
Sbjct: 216 EEMDK 220



 Score = 37.4 bits (85), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +  Y +L++ Y R G        F+++ A  +KP+V  +TS + AY+  +     +   E
Sbjct: 17  LREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTE 76

Query: 204 EMIDAG 209
           EM+  G
Sbjct: 77  EMLSQG 82


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 95/183 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++   M+   I+P + ++  ++  Y K G   +   + + M +SG++PD    N++++
Sbjct: 360 AASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLID 419

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y +LG+F+        ME+    AD+ TYN LI+ YG+ G  +    LF  +  + L P
Sbjct: 420 IYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVP 479

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+T+++ + +YS+  +++    +F E   AG  PD      LI +C     +E    L+
Sbjct: 480 NVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLL 539

Query: 238 RTM 240
           + M
Sbjct: 540 QEM 542



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 104/208 (50%), Gaps = 5/208 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSM 115
           +A  VF+ MK+ G  P + ++  ++ A  K G ++ +   + ++M K G++PD    NS+
Sbjct: 253 EALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSL 312

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + +  R G +E  + V   M++     DI T+N LI+   +GG +E    +  ++  K +
Sbjct: 313 IAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNI 372

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+++ +  Y +   +   + ++ +M ++G  PD  +   LI   +   + +    
Sbjct: 373 SPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALI 432

Query: 236 LVRTMHK-DMKTALPIY---FNLYGEKG 259
             + M +  +K  +  Y    + YG++G
Sbjct: 433 ACKDMERVGLKADVVTYNALIDAYGKQG 460



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 88/186 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +++ +MK  G+ P   S+  L+  Y+K G           M + GLK D    N+
Sbjct: 392 FEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNA 451

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ YG+ G+++    +   M+      ++ TY+ LI+ Y + G  + +  +F       
Sbjct: 452 LIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAG 511

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKPDVV ++S + +  +  L    + + +EM  AG  P+  T   LI A     Q +++ 
Sbjct: 512 LKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLE 571

Query: 235 TLVRTM 240
            +   M
Sbjct: 572 AVKANM 577



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 88/182 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D+  VF EM+R GI   + +   L+ A  K G +     ++  M    + P+    ++
Sbjct: 322 WEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYST 381

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ YG+LG FE+   +   M++     D  +YN LI+IY + G  +      + +    
Sbjct: 382 MIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVG 441

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LK DVVT+ + + AY ++  Y+    +F++M   G  P+  T   LI + S     + V+
Sbjct: 442 LKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVS 501

Query: 235 TL 236
            +
Sbjct: 502 NV 503



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 1/164 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++++   + G V     V N+  K+G   + +  ++M++ YGR G+  +  +V  AM+K 
Sbjct: 205 IMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKA 264

Query: 139 SYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
               ++ TYN +I+  G+GG  +++   +F  +  + ++PD +T+ S +A  SR  L+  
Sbjct: 265 GCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWED 324

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
              +F EM   G   D  T   LI A     Q+E   +++ TM 
Sbjct: 325 SQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMR 368



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 26/203 (12%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +F++MK  G+ P + ++  L+ +YSK G       V  +  ++GLKPD  + +S
Sbjct: 462 YKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSS 521

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK- 173
           +++   + G  E    +L  M +     +I TYN LI+ YGR G  +K+E +  ++P   
Sbjct: 522 LIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSV 581

Query: 174 -----------RLKP----DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
                      R  P    +    T  LAA S          +F EM   G  P+  T  
Sbjct: 582 QKIGERSMEVVRKPPPSQQNASDHTGVLAAVS----------VFHEMQQFGLKPNVVTFS 631

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +++ACS    +++ + L+  M 
Sbjct: 632 AILNACSRCASLQEASVLLEQMR 654



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 86/180 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM++ G+ P   +   L+   S+ G     + V  +M + G++ D F  N++++   
Sbjct: 293 IFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVC 352

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + GQ E    ++T M   + + ++ TY+ +I+ YG+ G  E+   L+  +    ++PD V
Sbjct: 353 KGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRV 412

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + +  Y++   +   L   ++M   G   D  T   LI A   + + +    L   M
Sbjct: 413 SYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKM 472



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           +I+I+  GR G +E    +F          +V  +++ ++AY R    R  L++F+ M  
Sbjct: 204 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 263

Query: 208 AGCYPDGGTAKVLISACSSED-QIEQVTTLVRTMHKDMKTALPIYFN 253
           AGC P+  T   +I AC      ++Q   +   M K+      I FN
Sbjct: 264 AGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFN 310


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 98/183 (53%), Gaps = 2/183 (1%)

Query: 61  VFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +F+ M+R +   P    + +++    + G + KC+ + ++M   G+ P  F   +++N Y
Sbjct: 132 LFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAY 191

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPD 178
           GR GQ++   E+L  M+K   +  I TYN +IN   RGG   E++ GLF  +  + ++ D
Sbjct: 192 GRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQAD 251

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           +VT+ + L+A +R+ L      +F  M + G  PD  T   L+      +++E+V+ L++
Sbjct: 252 IVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLK 311

Query: 239 TMH 241
            M 
Sbjct: 312 EME 314



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 97/182 (53%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G  P + S+ +LL A++++G++ +  GV  QM  +G  P+    + +LNLYG
Sbjct: 309 LLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYG 368

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+++ + ++   M+  +   + +TYNILIN++G GG+ +++  LF  +  + ++P++ 
Sbjct: 369 RHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNME 428

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A  +  L+    +I   M + G  P       +I A       E+      TM
Sbjct: 429 TYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTM 488

Query: 241 HK 242
           ++
Sbjct: 489 NE 490



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 92/181 (50%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F +M+  GI   + ++  LL+A ++ G   + E V   M++ G+ PD    + ++  +
Sbjct: 238 GLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETF 297

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+L + EK+ E+L  ME G    DI++YN+L+  + + G I++  G+F+ +      P+ 
Sbjct: 298 GKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNA 357

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T++  L  Y R   Y    ++F EM  +   P+  T  +LI+        ++V TL   
Sbjct: 358 ATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHD 417

Query: 240 M 240
           M
Sbjct: 418 M 418



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 100/204 (49%), Gaps = 5/204 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           + + MK+  ++P++ ++  ++ + ++ G +  +  G+  QM   G++ D    N++L+  
Sbjct: 203 LLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSAC 262

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            R G  ++ E V   M +G    DI+TY+ L+  +G+   +EK+  L + + +    PD+
Sbjct: 263 ARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDI 322

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            ++   L A+++    +  + +F +M  AGC P+  T  +L++      + + V  L   
Sbjct: 323 TSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLE 382

Query: 240 MH----KDMKTALPIYFNLYGEKG 259
           M     +       I  N++GE G
Sbjct: 383 MKVSNTEPNAATYNILINVFGEGG 406



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 2/194 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  VF  M   GI P + ++  L+  + K   + K   ++ +M   G  PD    N +
Sbjct: 269 DEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVL 328

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  + + G  ++   V   M+      + +TY+IL+N+YGR G  + +  LF  +     
Sbjct: 329 LEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNT 388

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+  T+   +  +     ++  + +F +M++    P+  T + LI AC      E    
Sbjct: 389 EPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKK 448

Query: 236 LVRTMHKDMKTALP 249
           ++  +H + K  +P
Sbjct: 449 IL--LHMNEKGVVP 460



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 74/165 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF +M+  G  P   ++ +LL  Y + G       +  +M  S  +P+    N ++
Sbjct: 340 EAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILI 399

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N++G  G F+++  +   M + +   ++ TY  LI   G+GG  E  + +   +  K + 
Sbjct: 400 NVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVV 459

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           P    +T  + AY +  LY   L  F  M + G  P   T   LI
Sbjct: 460 PSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLI 504



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 75/151 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A   F  M  +G  PT++++  L+  ++K G   + E ++ +M +SG+  +    N 
Sbjct: 478 YEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNG 537

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + GQFE+  +    MEK     D  T   ++++Y   G +E+ E  F  + A  
Sbjct: 538 VIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALG 597

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           + P V+ +   LA Y++   +    ++ +EM
Sbjct: 598 ILPSVMCYCMMLAVYAKADRWDDAHQLLDEM 628



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 91/203 (44%), Gaps = 9/203 (4%)

Query: 43  TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N+ + +F    YF +   +F +M    + P M+++  L+ A  K G     + ++  M
Sbjct: 394 TYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHM 453

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
           ++ G+ P +     ++  YG+   +E+       M +      + TYN LI ++ +GG  
Sbjct: 454 NEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLY 513

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++ E +   +    +  +  T+   + A+ +   +   ++ + EM  A C PD  T + +
Sbjct: 514 KESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAV 573

Query: 221 ISA-C------SSEDQIEQVTTL 236
           +S  C       SE+Q  ++  L
Sbjct: 574 LSVYCFAGLVEESEEQFGEIKAL 596



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 81/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +   M   G+ P+ K++  ++ AY +     +     N M++ G KP     NS++
Sbjct: 445 DAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLI 504

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++ + G +++ E +L  M +   A +  T+N +I  + +GG  E+    +  +   R  
Sbjct: 505 QMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCD 564

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T  + L+ Y    L     E F E+   G  P      ++++  +  D+ +    L
Sbjct: 565 PDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQL 624

Query: 237 VRTM 240
           +  M
Sbjct: 625 LDEM 628


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 8/214 (3%)

Query: 29  PSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG 88
           P   +L   +L+    +L V        +A   F E+KR G +P + +   +L+ Y +  
Sbjct: 417 PHAVLLKTLVLVNSKCDLLV--------EAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQ 468

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
              K   ++N M++SG  P     NS++ ++ R   FE+ EEVL  +       D  +YN
Sbjct: 469 MFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYN 528

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            +I  Y R G +++   +F  +    L PDV+T+ + +A+Y+   ++   +++   MI  
Sbjct: 529 TVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKH 588

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           GC P+  T   ++      +  +     + ++H+
Sbjct: 589 GCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLHE 622



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 5/177 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  EM+  G +P++ ++  L++AY++ G + +   + NQM + G+  D F   ++L
Sbjct: 157 EAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLL 216

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRL 175
           + + R G+ E    V   M       +I T+N LI ++G RG F E M+ +F+ +     
Sbjct: 217 SGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMK-VFEEIKNSCC 275

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQ 229
            PD+VTW + LA + +  +      +F+EM  AG  P+  T   LISA   C S DQ
Sbjct: 276 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQ 332



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 91/183 (49%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+ EE+    I P       L+   SK   + + E    ++ + G  PD   +N+ML++Y
Sbjct: 405 ALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIY 464

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR   F K  E+L  M +  +   ++TYN L+ ++ R    E+ E + + + AK +KPD 
Sbjct: 465 GRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDT 524

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +++ + + AY R    +    IF EM ++G  PD  T    +++ +++   E    +VR 
Sbjct: 525 ISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRY 584

Query: 240 MHK 242
           M K
Sbjct: 585 MIK 587



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++   VFEE+K     P + +   LL  + + G  ++  GV  +M ++G  P+    N+
Sbjct: 260 FAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNT 319

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++  ++   M +     D+STYN ++    RGG  E+ E +F  +   R
Sbjct: 320 LISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGR 379

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            KP+ +T+ S L AY+  K   R L + EE+      P     K L+
Sbjct: 380 CKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLV 426



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 99/206 (48%)

Query: 35  INFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           IN  +  +T  L  F+ +     A  VF EM+  G  P + +   L+  +   G  A+  
Sbjct: 205 INLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMM 264

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            V  ++  S   PD    N++L ++G+ G   ++  V   M++  +  +  TYN LI+ Y
Sbjct: 265 KVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAY 324

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            R G  ++   +++ +    + PD+ T+ + LAA +R  L+ +  +IF EM D  C P+ 
Sbjct: 325 SRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNE 384

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
            T   L+ A ++  +I ++  L   +
Sbjct: 385 LTYCSLLHAYANGKEIGRMLALAEEI 410



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 94/186 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  +M   GI   + ++  LL+ + + G       V  +M  +G KP+    N+
Sbjct: 190 LKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNA 249

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ ++G  G+F +M +V   ++      DI T+N L+ ++G+ G   ++ G+F+ +    
Sbjct: 250 LIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 309

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+  T+ + ++AYSR   + + ++I++ M++AG  PD  T   +++A +     EQ  
Sbjct: 310 FVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSE 369

Query: 235 TLVRTM 240
            +   M
Sbjct: 370 KIFAEM 375



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 91/186 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AVF++MK +G  P   ++  LL  Y K+    +   V+ +M  +G  P     NS++
Sbjct: 122 EAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLI 181

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G  ++  E+   M +G    D+ TY  L++ + R G  E    +F  + A   K
Sbjct: 182 SAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCK 241

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++ T+ + +  +  +  +   +++FEE+ ++ C PD  T   L++         +V+ +
Sbjct: 242 PNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGV 301

Query: 237 VRTMHK 242
            + M +
Sbjct: 302 FKEMKR 307



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +FE MK  G+ P   ++  L+T   +     +   V   M   G  PD    N++L++Y
Sbjct: 90  GLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVY 149

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+  + ++  EVL  ME    +  I TYN LI+ Y R G +++   L   +    +  DV
Sbjct: 150 GKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDV 209

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            T+T+ L+ + R       + +F EM  AGC P+  T   LI
Sbjct: 210 FTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALI 251



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 1/170 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           + +A  VF++M+  G  PT+ ++ ++L  Y K G    K +G+   M  +G+ PD +  N
Sbjct: 49  YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYN 108

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++    R    E+   V   M+   +  D  TYN L+++YG+    ++   + + +   
Sbjct: 109 TLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVN 168

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              P +VT+ S ++AY+R  L +  +E+  +M++ G   D  T   L+S 
Sbjct: 169 GCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSG 218



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 1/186 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A ++  ++ + G    + ++  L+TA    G   +   V  +M + G KP     N +
Sbjct: 15  SVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVI 74

Query: 116 LNLYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           LN+YG++G  + K++ +   M+      D  TYN LI    RG   E+   +F+ + +  
Sbjct: 75  LNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMG 134

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD VT+ + L  Y + +  +  +E+  EM   GC P   T   LISA + +  +++  
Sbjct: 135 FVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAM 194

Query: 235 TLVRTM 240
            L   M
Sbjct: 195 ELKNQM 200



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 35/220 (15%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+   VF+EMKR G  P   ++  L++AYS+ G+  +   +  +M ++G+ PD    N++
Sbjct: 296 SEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAV 355

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL--------- 166
           L    R G +E+ E++   M+ G    +  TY  L++ Y  G  I +M  L         
Sbjct: 356 LAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVI 415

Query: 167 --------------------------FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
                                     F  L  K   PD+ T  + L+ Y R++++ +  E
Sbjct: 416 EPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNE 475

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           I   M ++G  P   T   L+   S  +  E+   +++ +
Sbjct: 476 ILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEI 515



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 1/164 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++++   K G V+    ++N +HK G   D +   S++      G++ +   V   ME+ 
Sbjct: 3   VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 139 SYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                + TYN+++N+YG+ G    K++GLF+ +    + PD  T+ + +    R  L+  
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
              +F++M   G  PD  T   L+       + ++   ++R M 
Sbjct: 123 AAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREME 166


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 36/222 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG----------NVAKCEGV-------- 96
           + DA  VF +MK +G  PT+ ++  +L  Y K G             KC G+        
Sbjct: 195 YRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYN 254

Query: 97  ------------------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
                               ++  +G +PD    N++L++YG+  + ++  EVL  ME  
Sbjct: 255 TLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESN 314

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           S+   + TYN L++ Y RGG +E    L + +  K +KPDV T+T+ L+ +         
Sbjct: 315 SFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELA 374

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +E+FEEM   GC P+  T   LI       + E++  + + +
Sbjct: 375 MEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEI 416



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 94/186 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +  +M   GI P + ++  LL+ +   G       V  +M K G KP+    N+
Sbjct: 336 LEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNA 395

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +YG  G+FE+M +V   ++    + DI T+N L+ ++G+ G   ++ G+F+ +   R
Sbjct: 396 LIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSR 455

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+  T+ + ++AY R   + + +  ++ M++AG  PD  T   +++  +     EQ  
Sbjct: 456 FAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSE 515

Query: 235 TLVRTM 240
            ++  M
Sbjct: 516 KVLAEM 521



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 93/184 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFEEM+++G  P + +   L+  Y   G   +   V  ++      PD    N++L 
Sbjct: 374 AMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLA 433

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M++  +A +  T+N LI+ YGR G  ++    ++ +    + P
Sbjct: 434 VFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSP 493

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + LA  +R  L+ +  ++  EM D GC P+  T   L+ A ++  ++E++  L 
Sbjct: 494 DLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALA 553

Query: 238 RTMH 241
             ++
Sbjct: 554 EEIY 557



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 3/176 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V ++M+     P++ ++  L++AY + G +     +  +M   G+KPD +   ++L
Sbjct: 303 EAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLL 362

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +   G+ E   EV   M K     +I T+N LI +YG  G  E+M  +F+ +   +  
Sbjct: 363 SGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCS 422

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQ 229
           PD+VTW + LA + +  +      +FEEM  +   P+  T   LISA   C S DQ
Sbjct: 423 PDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQ 478



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 83/166 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +    F E ++ GI+P + +   +L+ Y +   V K   ++N M++SGL       NS++
Sbjct: 583 ETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLM 642

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +Y R   F K E++   +       D+ +YNI+I  Y R   +++ + + + +      
Sbjct: 643 YMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPV 702

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           PDVVT+ + +AAY+   ++   +++   MI  GC P+  T   ++ 
Sbjct: 703 PDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVD 748



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 4/174 (2%)

Query: 73  TMKSHMLLLTAY----SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           T+K+H +LL       SK   + + E    +  K G+ PD    N+ML++YGR     K 
Sbjct: 560 TIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKA 619

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            E+L  M +      +++YN L+ +Y R     K E +F+ +  K ++PDV+++   + A
Sbjct: 620 NEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYA 679

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y R  +      I EEM      PD  T    I+A +++    +   ++R M K
Sbjct: 680 YCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIK 733



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 76/151 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +   VF+E+K    +P + +   LL  + + G  ++  GV  +M +S   P+    N+
Sbjct: 406 FEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNT 465

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ YGR G F++       M +   + D+STYN ++    RGG  E+ E +   +    
Sbjct: 466 LISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGG 525

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            KP+ VT++S L AY+  +   R   + EE+
Sbjct: 526 CKPNEVTYSSLLHAYANGREVERMNALAEEI 556



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 87/187 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+   VFEEMKR    P   +   L++AY + G+  +      +M ++G+ PD    N++
Sbjct: 442 SEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAV 501

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L    R G +E+ E+VL  M+ G    +  TY+ L++ Y  G  +E+M  L + + +  +
Sbjct: 502 LATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTI 561

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           K   V   + +   S+  L       F E    G  PD  T+  ++S    +  + +   
Sbjct: 562 KTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANE 621

Query: 236 LVRTMHK 242
           ++  M++
Sbjct: 622 ILNFMYE 628



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 1/186 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A ++   ++  G    +  +  L+TAY+          V  +M + G +P     N++
Sbjct: 161 SRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAI 220

Query: 116 LNLYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           LN+YG++G  + K+  ++  M+    A D+ TYN LI+    G   E+   LF+ +    
Sbjct: 221 LNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAG 280

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PD VT+ + L  Y + +  +  +E+ ++M      P   T   L+SA      +E   
Sbjct: 281 FRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDAL 340

Query: 235 TLVRTM 240
            L R M
Sbjct: 341 VLKRKM 346



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 96/231 (41%), Gaps = 39/231 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A A ++ M   G++P + ++  +L   ++ G   + E V+ +M   G KP+    +S
Sbjct: 476 FDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSS 535

Query: 115 MLNLYGRLGQFEKM-----------------------------------EEVLTAMEKGS 139
           +L+ Y    + E+M                                   E       K  
Sbjct: 536 LLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRG 595

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + D++T N +++IYGR   + K   +   +    L   + ++ S +  YSR + + +  
Sbjct: 596 ISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSE 655

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
           +IF E++D G  PD  +  ++I A    D +++   ++    ++MK   P+
Sbjct: 656 QIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRII----EEMKVPAPV 702



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 79/166 (47%), Gaps = 1/166 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++++   KTG V++   +++ +   G + D +   S++  Y    ++    +V   M++ 
Sbjct: 149 VIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEV 208

Query: 139 SYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                + TYN ++N+YG+ G    K+  L Q +    L PD+ T+ + ++      LY  
Sbjct: 209 GCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEE 268

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            L++FEE+  AG  PD  T   L+       + ++   +++ M  +
Sbjct: 269 ALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESN 314



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%)

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
           S   ++++I G+ G + +   L  +L A   + DV  +TS + AY+  K YR  L++F +
Sbjct: 145 SVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGK 204

Query: 205 MIDAGCYP 212
           M + GC P
Sbjct: 205 MKEVGCEP 212



 Score = 40.8 bits (94), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 47/100 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  +  +F E+   GI P + S+ +++ AY +   + + + +I +M      PD    N+
Sbjct: 651 FHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNT 710

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            +  Y     F +  +V+  M K     + +TYN +++ Y
Sbjct: 711 FIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWY 750


>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 466

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 107/251 (42%), Gaps = 69/251 (27%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV--- 111
           +  A  +F EM R G+ PT+ ++  L+  Y K G  A+ E +++ M  +G+ PDT     
Sbjct: 207 YDQAKKLFNEMMREGVEPTIVTYNTLIFGYGKAGLFAEIEYLLSLMEANGITPDTITWNT 266

Query: 112 --------------------------------INSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                                           +NS++  YGR G + KME V   M + S
Sbjct: 267 LIRVFGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIGTYGRAGLYGKMECVTDFMRRYS 326

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK------- 192
           Y     TYNI+I IYG+   IE+M+  F+ + A+ LKP+ +T++S L+AY +        
Sbjct: 327 YPMTTVTYNIIIEIYGKARKIEQMDTAFKRMKAQGLKPNCITFSSILSAYGKHGEWHKIE 386

Query: 193 ---------------------KLYRRCLE------IFEEMIDAGCYPDGGTAKVLISACS 225
                                  +RR L+      +FEEM   G  PDG T   LI A  
Sbjct: 387 KIMRQVRHYNAADTAVYNAAIDAHRRALDFEAMEKLFEEMKMEGVAPDGITYTTLIEAYG 446

Query: 226 SEDQIEQVTTL 236
              ++++   L
Sbjct: 447 RVRKLQKAREL 457



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 11/217 (5%)

Query: 34  LINFLL---LQHTPNLFVFIFSIY-----FSDAHAVFEEMKRL-GITPTMKSHMLLLTAY 84
           L +FLL   L+ T  +F  + +++        A  VFE+M+   G  P   ++  ++   
Sbjct: 142 LFDFLLQDKLRPTLEIFTALITVFTKSNLLKKAFEVFEQMRLFDGCLPDKYAYTTMIKGC 201

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
              G   + + + N+M + G++P     N+++  YG+ G F ++E +L+ ME      D 
Sbjct: 202 CDAGLYDQAKKLFNEMMREGVEPTIVTYNTLIFGYGKAGLFAEIEYLLSLMEANGITPDT 261

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
            T+N LI ++G    I +ME  ++ L A+ L  D VT  S +  Y R  LY + +E   +
Sbjct: 262 ITWNTLIRVFGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIGTYGRAGLYGK-MECVTD 320

Query: 205 MIDAGCYP-DGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +    YP    T  ++I       +IEQ+ T  + M
Sbjct: 321 FMRRYSYPMTTVTYNIIIEIYGKARKIEQMDTAFKRM 357



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 77/140 (55%), Gaps = 1/140 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+R     T  ++ +++  Y K   + + +    +M   GLKP+    +S+L+ YG+ G+
Sbjct: 322 MRRYSYPMTTVTYNIIIEIYGKARKIEQMDTAFKRMKAQGLKPNCITFSSILSAYGKHGE 381

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           + K+E+++  +   + AAD + YN  I+ + R    E ME LF+ +  + + PD +T+T+
Sbjct: 382 WHKIEKIMRQVRHYN-AADTAVYNAAIDAHRRALDFEAMEKLFEEMKMEGVAPDGITYTT 440

Query: 185 RLAAYSRKKLYRRCLEIFEE 204
            + AY R +  ++  E+ EE
Sbjct: 441 LIEAYGRVRKLQKARELQEE 460



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y A++STY  L+ +  R    +    LF  L   +L+P +  +T+ +  +++  L ++  
Sbjct: 116 YTAEVSTYVKLLTMLARVKQPQAASNLFDFLLQDKLRPTLEIFTALITVFTKSNLLKKAF 175

Query: 200 EIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL---- 254
           E+FE+M +  GC PD      +I  C      +Q   L   M ++      + +N     
Sbjct: 176 EVFEQMRLFDGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREGVEPTIVTYNTLIFG 235

Query: 255 YGEKGV 260
           YG+ G+
Sbjct: 236 YGKAGL 241



 Score = 38.5 bits (88), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 82/227 (36%), Gaps = 40/227 (17%)

Query: 71  TPTMKSHMLLL-----------------------------------TAYSKTGNVAKCEG 95
           T  + +++ LL                                   T ++K+  + K   
Sbjct: 117 TAEVSTYVKLLTMLARVKQPQAASNLFDFLLQDKLRPTLEIFTALITVFTKSNLLKKAFE 176

Query: 96  VINQMHK-SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           V  QM    G  PD +   +M+      G +++ +++   M +      I TYN LI  Y
Sbjct: 177 VFEQMRLFDGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREGVEPTIVTYNTLIFGY 236

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           G+ G   ++E L   + A  + PD +TW + +  +          + +E ++  G   D 
Sbjct: 237 GKAGLFAEIEYLLSLMEANGITPDTITWNTLIRVFGLHNRIPEMEQAYEGLLAQGLMADE 296

Query: 215 GTAKVLISACSSE---DQIEQVTTLVRTMHKDMKTAL-PIYFNLYGE 257
            T   LI          ++E VT  +R     M T    I   +YG+
Sbjct: 297 VTLNSLIGTYGRAGLYGKMECVTDFMRRYSYPMTTVTYNIIIEIYGK 343


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 96/187 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  V  EM++ G+ P  +++ LL+ AY+  G       V+ +M  S ++P+++V + 
Sbjct: 343 LKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSR 402

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y   G+++K  +VL  M+      D   YN++I+ +G+   ++     F+ + ++ 
Sbjct: 403 ILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEG 462

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PD VTW + +  + +   +    E+F EM   G  P   T  ++I++   + + EQV+
Sbjct: 463 IRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVS 522

Query: 235 TLVRTMH 241
             +  M 
Sbjct: 523 LFLSKMQ 529



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 35/201 (17%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM++ G +P + ++ +++ +  +     +    +++M   GL P++    ++++
Sbjct: 486 AEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVD 545

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE---------KMEGLFQ 168
           +YG+ G+F    E L  ++   +    + YN LIN Y + G  E           EGL  
Sbjct: 546 VYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTP 605

Query: 169 SLPA--------------------------KRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           SL A                            ++PDVVT+T+ + A  R + +++   ++
Sbjct: 606 SLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVY 665

Query: 203 EEMIDAGCYPDGGTAKVLISA 223
           EEM+ +GC PD     +L SA
Sbjct: 666 EEMVTSGCTPDRKARAMLRSA 686



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 11/225 (4%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN +V+  I + Y     +  +  V ++MK  G+ P    + +++  + K   +      
Sbjct: 395 PNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMAT 454

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M   G++PDT   N+++N + + G+    EE+   M++  Y+  I+TYNI+IN  G 
Sbjct: 455 FERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGE 514

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               E++      + ++ L P+ +T+T+ +  Y +   +   +E  E +   G  P    
Sbjct: 515 QQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTM 574

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKT----ALPIYFNLYGE 257
              LI+A +     E      R M  +  T    AL    N +GE
Sbjct: 575 YNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGE 619



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 76/153 (49%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P   + + ++ A   +G   + E +  ++ ++G +P T   N++L  Y + G  +  
Sbjct: 287 GLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDA 346

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E V++ MEK     D  TY++LI+ Y   G  E    + + + A  ++P+   ++  LA+
Sbjct: 347 EFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILAS 406

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           Y  K  +++  ++ ++M   G  PD     V+I
Sbjct: 407 YRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMI 439



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 2/205 (0%)

Query: 41  QHTPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  Y     A A FE M   GI P   +   L+  + K+G     E +  
Sbjct: 432 RHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFG 491

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M + G  P     N M+N  G   ++E++   L+ M+      +  TY  L+++YG+ G
Sbjct: 492 EMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSG 551

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
                    + L +   KP    + + + AY+++ L    +  F  M   G  P      
Sbjct: 552 RFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALN 611

Query: 219 VLISACSSEDQIEQVTTLVRTMHKD 243
            LI+A   + +  +   +++ M ++
Sbjct: 612 SLINAFGEDRRDAEAFAVLQYMKEN 636


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 95/188 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V +EM + G+ P   ++ LL+ AY++ G       ++ +M   G+KP ++V + 
Sbjct: 308 LKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 367

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G+++K   VL  M       D   YN++I+ +G+   +      F  +  + 
Sbjct: 368 ILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEG 427

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDVVTW + + A+ +   + R +E+F+EM ++ C     T  ++I+    E + E V 
Sbjct: 428 IEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVE 487

Query: 235 TLVRTMHK 242
            ++  M +
Sbjct: 488 AMLAEMKE 495



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+  EMK  G+ P + ++  L+  Y ++G   +    I  M   GLKP   + ++++N Y
Sbjct: 488 AMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAY 547

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G  +    V+ AM      A     N LIN +G    I +   + Q +    L+PDV
Sbjct: 548 AQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDV 607

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +T+T+ + A  R + + +   I+EEMI +GC PD     +L SA
Sbjct: 608 ITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSA 651



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 91/199 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AV  EM   G+ P    + +++  + K   +       ++M + G++PD    N+
Sbjct: 378 WQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNT 437

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ ++  E+   M + +     +TYNI+IN+ G     E +E +   +  + 
Sbjct: 438 LIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQG 497

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+++T+T+ +  Y R   ++  ++  E M   G  P       L++A +     +   
Sbjct: 498 LVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 557

Query: 235 TLVRTMHKDMKTALPIYFN 253
            +V+ M  D   A  +  N
Sbjct: 558 NVVKAMRADGLEASTVVLN 576



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 2/205 (0%)

Query: 41  QHTPNLFVFIFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  Y    HA+  F+ M+  GI P + +   L+ A+ K G   +   + +
Sbjct: 397 RHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFD 456

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +S     T   N M+NL G   ++E +E +L  M++     +I TY  L+++YGR G
Sbjct: 457 EMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSG 516

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             ++     +++ A  LKP    + + + AY+++ L    L + + M   G         
Sbjct: 517 RFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN 576

Query: 219 VLISACSSEDQIEQVTTLVRTMHKD 243
            LI+A   + +I +  ++++ M ++
Sbjct: 577 SLINAFGEDRRIAEAFSVLQFMKEN 601



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 1/155 (0%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFE 126
           +G+TP   +   L+++      VA+ E +  +   +G +KP T   N++L  Y ++G  +
Sbjct: 250 IGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLK 309

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             E+VL  M +   A D +TY++L++ Y R G  E    L + + A  +KP    ++  L
Sbjct: 310 NAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 369

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           A +  +  +++   +  EM  +G  PD     V+I
Sbjct: 370 AGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMI 404


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 95/188 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V +EM + G+ P   ++ LL+ AY++ G       ++ +M   G+KP ++V + 
Sbjct: 308 LKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 367

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G+++K   VL  M       D   YN++I+ +G+   +      F  +  + 
Sbjct: 368 ILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEG 427

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDVVTW + + A+ +   + R +E+F+EM ++ C     T  ++I+    E + E V 
Sbjct: 428 IEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVE 487

Query: 235 TLVRTMHK 242
            ++  M +
Sbjct: 488 AMLAEMKE 495



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+  EMK  G+ P + ++  L+  Y ++G   +    I  M   GLKP   + ++++N Y
Sbjct: 488 AMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAY 547

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G  +    V+ AM      A     N LIN +G    I +   + Q +    L+PDV
Sbjct: 548 AQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDV 607

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +T+T+ + A  R + + +   I+EEMI +GC PD     +L SA
Sbjct: 608 ITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSA 651



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 91/199 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AV  EM   G+ P    + +++  + K   +       ++M + G++PD    N+
Sbjct: 378 WQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNT 437

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ ++  E+   M + +     +TYNI+IN+ G     E +E +   +  + 
Sbjct: 438 LIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQG 497

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+++T+T+ +  Y R   ++  ++  E M   G  P       L++A +     +   
Sbjct: 498 LVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 557

Query: 235 TLVRTMHKDMKTALPIYFN 253
            +V+ M  D   A  +  N
Sbjct: 558 NVVKAMRADGLEASTVVLN 576



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 2/205 (0%)

Query: 41  QHTPNLFVFIFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  Y    HA+  F+ M+  GI P + +   L+ A+ K G   +   + +
Sbjct: 397 RHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFD 456

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +S     T   N M+NL G   ++E +E +L  M++     +I TY  L+++YGR G
Sbjct: 457 EMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSG 516

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             ++     +++ A  LKP    + + + AY+++ L    L + + M   G         
Sbjct: 517 RFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN 576

Query: 219 VLISACSSEDQIEQVTTLVRTMHKD 243
            LI+A   + +I +  ++++ M ++
Sbjct: 577 SLINAFGEDRRIAEAFSVLQFMKEN 601



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 1/155 (0%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFE 126
           +G+TP   +   L+++      VA+ E +  +   +G +KP T   N++L  Y ++G  +
Sbjct: 250 IGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLK 309

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             E+VL  M +   A D +TY++L++ Y R G  E    L + + A  +KP    ++  L
Sbjct: 310 NAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 369

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           A +  +  +++   +  EM  +G  PD     V+I
Sbjct: 370 AGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMI 404


>gi|302769928|ref|XP_002968383.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
 gi|300164027|gb|EFJ30637.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
          Length = 532

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 37/213 (17%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+ ++  G+ P M S+ +L+ A  + G+  K   +   + K+G   + +V NSM+N + 
Sbjct: 199 VFQALESTGVLPDMYSYCILIDACGRCGDTEKATAIFEGLLKAGTVLNVYVCNSMMNAHA 258

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNI------------------------------- 149
             G  + +  +   M+    AAD++TYNI                               
Sbjct: 259 --GNIQHVLRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKEIKLNVL 316

Query: 150 ----LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
               LI I+G    ++++  + + + +  + P+VVTWTS + A S+  L  + L+++++M
Sbjct: 317 SYGTLIQIFGEAKMLDRVFQMKRDMDSTGIVPNVVTWTSLVGACSKGALVEKTLQVYQDM 376

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           + AGC P+  T   L+SAC    Q ++   L R
Sbjct: 377 VQAGCTPNAFTYNFLLSACVDGGQSDKAHKLFR 409



 Score = 43.5 bits (101), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 20/152 (13%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---------------- 104
           V+++M + G TP   ++  LL+A    G   K   +  +   SG                
Sbjct: 372 VYQDMVQAGCTPNAFTYNFLLSACVDGGQSDKAHKLFREWKTSGRILAGIEVQDESVIFS 431

Query: 105 --LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
             ++PD+   N+M+    +L +  + E V+  M       D  ++ ILIN YG  G  + 
Sbjct: 432 EWVRPDSVAYNTMMRACDKLPK--QAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQG 489

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
               FQ +    +  DVV +T+ +    + K+
Sbjct: 490 AVQAFQRMGKSGIIADVVAYTAIIKVRFKSKI 521



 Score = 42.0 bits (97), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 17/179 (9%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-------CEGVINQMHKSGLK------- 106
           V +E  RL     ++  +  L   +K G V K       C     +MH + L        
Sbjct: 114 VIDECGRLLQENRVEECIRCLERLAKCGFVVKNLVKPTLCMEACARMHNTALALRYACLL 173

Query: 107 PDTF-VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           PD     N ++  +   G  + + +V  A+E      D+ +Y ILI+  GR G  EK   
Sbjct: 174 PDILHSCNMIMQKFRDQGDLQSVFQVFQALESTGVLPDMYSYCILIDACGRCGDTEKATA 233

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           +F+ L       +V    S + A++     +  L ++ +M  +G   D  T  ++  AC
Sbjct: 234 IFEGLLKAGTVLNVYVCNSMMNAHAGN--IQHVLRLYRQMQGSGIAADVTTYNIVFKAC 290



 Score = 41.6 bits (96), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 83/192 (43%), Gaps = 22/192 (11%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++EE+K   I   + S+  L+  + +   + +   +   M  +G+ P+     S++ 
Sbjct: 299 ALRLYEELKAKEIKLNVLSYGTLIQIFGEAKMLDRVFQMKRDMDSTGIVPNVVTWTSLVG 358

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS-------- 169
              +    EK  +V   M +     +  TYN L++    GG  +K   LF+         
Sbjct: 359 ACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSACVDGGQSDKAHKLFREWKTSGRIL 418

Query: 170 ----------LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
                     + ++ ++PD V + + + A    KL ++   + +EM+ +G  PD  +  +
Sbjct: 419 AGIEVQDESVIFSEWVRPDSVAYNTMMRACD--KLPKQAEAVMQEMVSSGLRPDKRSWCI 476

Query: 220 LISA--CSSEDQ 229
           LI++  C+ + Q
Sbjct: 477 LINSYGCNGDKQ 488



 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 23/134 (17%)

Query: 43  TPNLFVFIFSIYF------SD-AHAVFEEMK---RLGITPTMKSHMLLLTAYSKTGNVA- 91
           TPN F + F +        SD AH +F E K   R+     ++   ++ + + +  +VA 
Sbjct: 382 TPNAFTYNFLLSACVDGGQSDKAHKLFREWKTSGRILAGIEVQDESVIFSEWVRPDSVAY 441

Query: 92  ------------KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                       + E V+ +M  SGL+PD      ++N YG  G  +   +    M K  
Sbjct: 442 NTMMRACDKLPKQAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQGAVQAFQRMGKSG 501

Query: 140 YAADISTYNILINI 153
             AD+  Y  +I +
Sbjct: 502 IIADVVAYTAIIKV 515


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 96/186 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F+EM R  I P + ++  L+   SK+G ++    +++QMH  G+ P     NS
Sbjct: 381 FDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNS 440

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   ++ Q +K   +LT ++      ++ TY+ILI    + G +E    +F+ L  K 
Sbjct: 441 ILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKG 500

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              +V T+T  +  +  + L+   L +  +M D GC PD  T +++I +   +D+ +   
Sbjct: 501 HNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAE 560

Query: 235 TLVRTM 240
            L+R M
Sbjct: 561 KLLREM 566



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 94/186 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  +F +M    I P + +  +L+ A+ K G + + + V + M K G+KP+    NS
Sbjct: 276 LNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNS 335

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  + +  K + +   M +G    DI +Y+I+IN + +    ++   LF+ +  K 
Sbjct: 336 LMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKN 395

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDVVT++S +   S+       L++ ++M D G  P   T   ++ A     Q+++  
Sbjct: 396 IIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAI 455

Query: 235 TLVRTM 240
            L+  +
Sbjct: 456 ALLTKL 461



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 88/186 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F EM   GI+P + ++  L++ +   G +     + N+M    +KPD +  N +
Sbjct: 242 NEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNIL 301

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + + G+ ++ + V   M K     +  TYN L++ Y     + K + +F ++    +
Sbjct: 302 VNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGV 361

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+ +++  +  + + K +   + +F+EM      PD  T   LI   S   +I     
Sbjct: 362 NPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQ 421

Query: 236 LVRTMH 241
           LV  MH
Sbjct: 422 LVDQMH 427



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 79/176 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   VF+ M + GI P   ++  L+  Y     V K + + N M + G+ PD    + M+
Sbjct: 313 EGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMI 372

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + ++ +F++   +   M + +   D+ TY+ LI+   + G I     L   +  + + 
Sbjct: 373 NGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVP 432

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           P + T+ S L A  +     + + +  ++ D G  P+  T  +LI       ++E 
Sbjct: 433 PTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLED 488



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 57  DAHAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  A  + ++R+    + P +  +  ++ +  K   V +   + ++M   G+ PD    +
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYS 264

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ +  LG+     ++   M   +   D+ T+NIL+N + + G +++ + +F  +  +
Sbjct: 265 ALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ 324

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +KP+ VT+ S +  Y   K   +   IF  M   G  PD  +  ++I+      + ++ 
Sbjct: 325 GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEA 384

Query: 234 TTLVRTMHKDMKTALP 249
             L + MH+  K  +P
Sbjct: 385 MNLFKEMHR--KNIIP 398



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN---LY 119
           ++M+  GI P + +  +L+  + + G +     V  ++ K G  PDT    +++    L 
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLK 168

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G++ Q     + + A+    +  D  +Y  LI+   + G       L Q +    ++P+V
Sbjct: 169 GQIQQAFLFHDKVVAL---GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNV 225

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           V + + + +  + KL     ++F EMI  G  PD  T   LIS 
Sbjct: 226 VMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISG 269



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/185 (17%), Positives = 85/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +VF ++ ++G  P   +   L+      G + +     +++   G   D     ++++
Sbjct: 139 AFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIH 198

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G+     ++L  ++      ++  YN +I+   +   + +   LF  + +K + P
Sbjct: 199 GLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISP 258

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+++ ++ +         +++F +MI     PD  T  +L++A   + ++++  T+ 
Sbjct: 259 DVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVF 318

Query: 238 RTMHK 242
             M K
Sbjct: 319 DMMMK 323



 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 31/178 (17%), Positives = 79/178 (44%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +++  LG      S+  L+    K G       ++ ++  + ++P+  + N++++   ++
Sbjct: 179 DKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKV 238

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
               +  ++ + M     + D+ TY+ LI+ +   G +     LF  +  + +KPDV T+
Sbjct: 239 KLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTF 298

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              + A+ +    +    +F+ M+  G  P+  T   L+       ++ +  ++  TM
Sbjct: 299 NILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTM 356


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 94/170 (55%), Gaps = 1/170 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           + DA  VF++M+  G  PT+ ++ ++L  Y K G   +K  G+++ M  SG+ PD +  N
Sbjct: 233 YRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYN 292

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   R   +E+  +V   M+   ++ D  T+N L+++YG+    ++   + + +   
Sbjct: 293 TLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFS 352

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              P +VT+ S ++AY+R  L R  +E+ ++M++ G  PD  T   L+S 
Sbjct: 353 GFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSG 402



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 94/184 (51%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V +EM+  G +P++ ++  L++AY++ G + +   + +QM + G+KPD F   ++L
Sbjct: 341 EAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLL 400

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G  E    +   M       +I T+N LI ++G  G   +M  +F+ +      
Sbjct: 401 SGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCA 460

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+VTW + LA + +  +      +F+EM  AG  P+  T   LISA S     +Q   +
Sbjct: 461 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAV 520

Query: 237 VRTM 240
            + M
Sbjct: 521 YKRM 524



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 96/176 (54%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + ++M   GI P + ++  LL+ + K G       +  +M  +G KP+    N+++
Sbjct: 376 EAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALI 435

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++G  G+F +M +V   +E  + A DI T+N L+ ++G+ G   ++ G+F+ +      
Sbjct: 436 KMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV 495

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           P+  T+ + ++AYSR   +++ + +++ M++AG  PD  +   +++A +     EQ
Sbjct: 496 PERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQ 551



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 96/193 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+  G  P + +   L+  +   G  A+   V  ++      PD    N++L 
Sbjct: 412 AMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLA 471

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G+ G   ++  V   M++  +  +  T+N LI+ Y R G  ++   +++ +    + P
Sbjct: 472 VFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTP 531

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ ++ + LAA +R  L+ +  ++F EM D  C P+  T   L+ A ++  +IE++ TL 
Sbjct: 532 DLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLA 591

Query: 238 RTMHKDMKTALPI 250
             ++  +   +P+
Sbjct: 592 EEIYSGLTEPVPV 604



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 6/215 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++   VFEE++     P + +   LL  + + G  ++  GV  +M ++G  P+    N+
Sbjct: 444 FAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNT 503

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++   V   M +     D+S+YN ++    RGG  E+ E +F  +   R
Sbjct: 504 LISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGR 563

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+ +T+ S L AY+  K   R   + EE+      P     K L+   S  D + +  
Sbjct: 564 CKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETE 623

Query: 235 TLVRTMHK----DMKTALPIYFNLYGEKG-VARSN 264
                + K    D+ T L     +YG +  VA++N
Sbjct: 624 HAFEELKKKGSPDLST-LNAMIAIYGRRQMVAKAN 657



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 2/165 (1%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           HA FEE+K+ G +P + +   ++  Y +   VAK   ++N M++SG  P     NS++ +
Sbjct: 624 HA-FEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYM 681

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           + R   FE+ EEVL  +       D+ +YN +I  Y R G ++    +F  +    L PD
Sbjct: 682 HSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPD 741

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           V+T+ + +A+Y+   L+   + +   MI  GC  +  T   ++  
Sbjct: 742 VITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDG 786



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 1/186 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A ++   +++ G    + ++  L+TAY+  G       V  +M + G KP     N +
Sbjct: 199 SAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVI 258

Query: 116 LNLYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           LN+YG++G  + K+  ++  M+    A D  TYN LI+   RG   E+   +F+ +    
Sbjct: 259 LNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSG 318

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD VT+ + L  Y + +  +  +E+ +EM  +G  P   T   LISA + +  + +  
Sbjct: 319 FSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAM 378

Query: 235 TLVRTM 240
            L   M
Sbjct: 379 ELKDQM 384



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 1/163 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   SK   + + E    ++ K G  PD   +N+M+ +YGR     K  E+L  M +  
Sbjct: 609 LVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESG 667

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           ++  ++TYN L+ ++ R    E+ E + + + AK LKPD++++ + + AY R    +   
Sbjct: 668 FSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDAS 727

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            IF  M   G  PD  T    +++ +++   E    +VR M K
Sbjct: 728 RIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIK 770



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 1/164 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++T   K G V+    ++N + K G   D +   S++  Y   G++     V   ME+ 
Sbjct: 187 VIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEE 246

Query: 139 SYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                + TYN+++N+YG+ G    K+ GL   + +  + PD  T+ + ++   R  LY  
Sbjct: 247 GCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEE 306

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             ++FEEM  +G  PD  T   L+       + ++   +++ M 
Sbjct: 307 AAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEME 350



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 63/136 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           + A+ +   M   G +P++ ++  L+  +S++ N  + E V+ ++   GLKPD    N++
Sbjct: 654 AKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTV 713

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y R G+ +    + + M+      D+ TYN  +  Y      E   G+ + +     
Sbjct: 714 IFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGC 773

Query: 176 KPDVVTWTSRLAAYSR 191
           K +  T+ S +  Y +
Sbjct: 774 KRNQNTYNSIVDGYCK 789



 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 45/100 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  +  V +E+   G+ P + S+  ++ AY + G +     + + M   GL PD    N+
Sbjct: 688 FERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNT 747

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            +  Y     FE    V+  M K     + +TYN +++ Y
Sbjct: 748 FVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGY 787



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 39/80 (48%)

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           + S   ++I + G+ G +     +  +L       DV  +TS + AY+    YR  + +F
Sbjct: 181 NCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVF 240

Query: 203 EEMIDAGCYPDGGTAKVLIS 222
           ++M + GC P   T  V+++
Sbjct: 241 KKMEEEGCKPTLITYNVILN 260


>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
 gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
          Length = 416

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 1/168 (0%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            + A A FE+MK +    P + ++ ++L A+++  NV +   +   + +S + PD +  N
Sbjct: 144 LTKALAYFEKMKSIERCQPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDIYTYN 203

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L+ YG+ G   +ME VL+ M+      DI T+N+LI+ YG+    EKME +F+SL   
Sbjct: 204 GVLDAYGKNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRS 263

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + KP + T+ S +  Y + +L  +   +F++M D    P   T + LI
Sbjct: 264 KEKPTLPTFNSMIVNYGKARLKDKAESVFKKMADMRYTPSFITFESLI 311



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 84/154 (54%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +  +A+F++++   ++P + ++  +L AY K G + + E V+++M     KPD    N +
Sbjct: 181 NQVNALFKDLEESIVSPDIYTYNGVLDAYGKNGMIREMESVLSRMKIDQCKPDIITFNLL 240

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ YG+   FEKME+V  ++ +      + T+N +I  YG+    +K E +F+ +   R 
Sbjct: 241 IDSYGKKQDFEKMEQVFKSLLRSKEKPTLPTFNSMIVNYGKARLKDKAESVFKKMADMRY 300

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P  +T+ S +  Y       +  +IF++M+++G
Sbjct: 301 TPSFITFESLIMMYGICDCVSKARDIFDDMVESG 334



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 18/195 (9%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML-----------NLYGRLGQFEKM 128
           L++   K G       + ++M  SG +PDT V N+++           +L   L  FEKM
Sbjct: 95  LISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKSLTKALAYFEKM 154

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           + +           ++ TYNI++  + +   + ++  LF+ L    + PD+ T+   L A
Sbjct: 155 KSIERC------QPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDIYTYNGVLDA 208

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM-KTA 247
           Y +  + R    +   M    C PD  T  +LI +   +   E++  + +++ +   K  
Sbjct: 209 YGKNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRSKEKPT 268

Query: 248 LPIYFNLYGEKGVAR 262
           LP + ++    G AR
Sbjct: 269 LPTFNSMIVNYGKAR 283



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 75/187 (40%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  +V   MK     P + +  LL+ +Y K  +  K E V   + +S  KP     NSM+
Sbjct: 217 EMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRSKEKPTLPTFNSMI 276

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG+    +K E V   M    Y     T+  LI +YG    + K   +F  +     +
Sbjct: 277 VNYGKARLKDKAESVFKKMADMRYTPSFITFESLIMMYGICDCVSKARDIFDDMVESGKE 336

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             V T  + L  Y    L+     + E     G  P+  T K+L  A +     E V  L
Sbjct: 337 VKVSTLNAVLNVYCMNGLHMEAHILLENARSIGVPPNSSTYKLLYRAYTKAKMKELVQKL 396

Query: 237 VRTMHKD 243
           ++ M KD
Sbjct: 397 LKHMDKD 403



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 64/159 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     VF+ + R    PT+ +   ++  Y K     K E V  +M      P      S
Sbjct: 250 FEKMEQVFKSLLRSKEKPTLPTFNSMIVNYGKARLKDKAESVFKKMADMRYTPSFITFES 309

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +YG      K  ++   M +      +ST N ++N+Y   G   +   L ++  +  
Sbjct: 310 LIMMYGICDCVSKARDIFDDMVESGKEVKVSTLNAVLNVYCMNGLHMEAHILLENARSIG 369

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + P+  T+     AY++ K+     ++ + M   G  P+
Sbjct: 370 VPPNSSTYKLLYRAYTKAKMKELVQKLLKHMDKDGIIPN 408



 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 15/159 (9%)

Query: 118 LYGRLGQFEKME---EVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           L+  LG+ +K     EV   M+K   Y AD   Y+ LI++ G+ G       LF  +   
Sbjct: 59  LFEELGKTDKWLQCLEVFRWMQKQRWYVADNGCYSKLISVMGKKGQTRMAMWLFSEMRNS 118

Query: 174 RLKPDVVTW----TSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSED 228
             +PD   +    T+ L +  + K   + L  FE+M     C P+  T  +++ A +   
Sbjct: 119 GCRPDTSVYNALITAHLHSKDKAKSLTKALAYFEKMKSIERCQPNVVTYNIILRAFAQAR 178

Query: 229 QIEQVTTLVRTMHKDMKTALPIY-----FNLYGEKGVAR 262
            + QV  L + + + +  +  IY      + YG+ G+ R
Sbjct: 179 NVNQVNALFKDLEESI-VSPDIYTYNGVLDAYGKNGMIR 216


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 83/163 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EM+  G  P +  +  L+ AY+  GNV    GV  QM + G  PD    +++L +YG
Sbjct: 245 LLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYG 304

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G FE++  + + M+  S    ++TYN LI ++G GG+ ++   LF  +    +KPD  
Sbjct: 305 NQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDA 364

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+++ L+   R  L R   +I + M+     P    +  LIS+
Sbjct: 365 TYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISS 407



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M   G+     ++  L+  ++ +  + + E ++ +M   G  PD    NS++ 
Sbjct: 207 AAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIE 266

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G       V   M++G  A D+ TY+ L+ IYG  G  E++  LF  +      P
Sbjct: 267 AYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPP 326

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            V T+ S +  +     ++  + +F +M+D+G  PD  T   L+S C
Sbjct: 327 TVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVC 373



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 47  FVFIFSIYF--SDAHA---VFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           F  IF  +   SD H    +F+ M+R     PT   + +++    + G + KC  +   M
Sbjct: 49  FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDM 108

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF- 159
            ++ +K + +   +++N YGR GQ+E    +L  M+K     ++ TYN ++N   +GG  
Sbjct: 109 PENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLD 168

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            E +  LF  +  + ++PD++T+ + L+A S + L  +   +F+ M ++G   D  T K 
Sbjct: 169 WEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKS 228

Query: 220 LISACSSEDQIEQVTTLVRTMHKD 243
           L+   +  +Q+ +V  L+R M  +
Sbjct: 229 LVDTFAGSNQLGRVEELLREMEDE 252



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F +M+  GI P + ++  LL+A S  G V +   V   M++SG+  D     S+++ + 
Sbjct: 175 LFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFA 234

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              Q  ++EE+L  ME      DI+ YN LI  Y   G +    G+F+ +      PDV 
Sbjct: 235 GSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVE 294

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           T+++ L  Y  +  + +   +F +M D    P   T   LI
Sbjct: 295 TYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLI 335



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 2/197 (1%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVINSMLNLYGRLGQFEKMEEV 131
           TM+   L+   ++   +  +   +   M +    KP   +   M+ + GR G  EK  E+
Sbjct: 45  TMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEI 104

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
              M +     ++  +  LIN YGR G  E    L   +  ++++P+++T+ + L A S+
Sbjct: 105 FEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSK 164

Query: 192 KKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
             L +   L +F +M   G  PD  T   L+SACSS   +EQ   + +TM++    A  +
Sbjct: 165 GGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAV 224

Query: 251 YFNLYGEKGVARSNLGQ 267
            +    +     + LG+
Sbjct: 225 TYKSLVDTFAGSNQLGR 241



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 72/164 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M+R G  P ++++  LL  Y   G   +   + + M      P     NS++ 
Sbjct: 277 AAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQ 336

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++G  G F++   +   M       D +TY+ L+++ GRGG   +   + Q +      P
Sbjct: 337 VFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTP 396

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            +      +++Y +  +Y+  L  +  + +AG  P       LI
Sbjct: 397 SLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALI 440



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 7/205 (3%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FE+M    +   + +   L+ AY + G       ++ +M K  ++P+    N++LN   
Sbjct: 104 IFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACS 163

Query: 121 RLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           + G  +E +  +   M       D+ TYN L++     G +E+   +F+++    +  D 
Sbjct: 164 KGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADA 223

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+ S +  ++      R  E+  EM D G  PD      LI A +    +     + + 
Sbjct: 224 VTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQ 283

Query: 240 MHK-----DMKTALPIYFNLYGEKG 259
           M +     D++T       +YG +G
Sbjct: 284 MQRGGCAPDVET-YSTLLRIYGNQG 307



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 71/156 (45%), Gaps = 1/156 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA   +  ++  G+ P + ++  L+  Y+K G   +    +  M+K+G +     +NS
Sbjct: 414 YKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNS 473

Query: 115 MLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++  Y ++G  ++  E  + + +K     D  T+  L+ +Y   G +E+ +  F  +   
Sbjct: 474 VMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKET 533

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
              P    +   L+   R+  +    ++ +EMI AG
Sbjct: 534 SKVPGARVYCLLLSLCVRRSKWDYATQLLDEMIAAG 569



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 35/186 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F    ++F +MK L   PT+ ++  L+  + + G   +   + + M  SG+KPD    ++
Sbjct: 309 FEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSA 368

Query: 115 MLNLYGRLGQFEKMEEV----LT--------------------AMEKGSYAA-------- 142
           +L++ GR G   +  ++    LT                    AM K +  +        
Sbjct: 369 LLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAG 428

Query: 143 ---DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
               +S Y+ LI  Y +GG   +      ++     +  V +  S + AYS+  L+   L
Sbjct: 429 LDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEAL 488

Query: 200 EIFEEM 205
           E F E+
Sbjct: 489 EFFSEL 494


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 3/199 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF+EM+R  I P + +  +L+ +  K G + +   V + M   G  PD F    
Sbjct: 309 WKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKI 368

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y   G    M ++   M     A DI T+++LI  Y   G ++K   +F  +    
Sbjct: 369 MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHG 428

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQV 233
           +KPDVVT+T+ +AA  R       +E F +MID G  PD      LI   C+    ++  
Sbjct: 429 VKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 488

Query: 234 TTLVRTMHKDMKTALPIYF 252
             ++  M+  M+  L I F
Sbjct: 489 ELILEIMNNGMR--LDIVF 505



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 89/184 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM + GI P + ++  ++ A  K   + K E  + QM   G+ PD +  N+++ 
Sbjct: 242 ACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIY 301

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ+++   V   M + S   D+ T N+L+    + G I++   +F ++  K   P
Sbjct: 302 GYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNP 361

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++   L  Y+ K       ++F+ M+  G  PD  T  VLI A ++   +++   + 
Sbjct: 362 DVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIF 421

Query: 238 RTMH 241
             M 
Sbjct: 422 NEMR 425



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 4/184 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   +M   G+ P   ++  L+  YS TG   +   V  +M +  + PD   +N ++ 
Sbjct: 277 AEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMG 336

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  +V   M       D+ +Y I++N Y   G +  M  LF  +    + P
Sbjct: 337 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAP 396

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
           D+ T++  + AY+   +  + + IF EM D G  PD  T   +I+A       +D +E+ 
Sbjct: 397 DIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKF 456

Query: 234 TTLV 237
             ++
Sbjct: 457 NQMI 460



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+  G+ P + ++  ++ A  + G +       NQM   G+ PD +  + ++ 
Sbjct: 417 AMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQ 476

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G   K +E++  +       DI  ++ +IN   + G I   + +F         P
Sbjct: 477 GFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHP 536

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V ++  +  Y       + L +F+ M+ AG  P+      L++      +I++  +L 
Sbjct: 537 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLF 596

Query: 238 RTM-HKDMKTALPIY 251
           R M  K +K +  +Y
Sbjct: 597 REMLQKGIKPSTILY 611



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 74/157 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F +M   G+ P   ++  L+  +   G++ K + +I ++  +G++ D    +S+
Sbjct: 450 DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSI 509

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +LG+    + +           D   Y++L++ Y   G +EK   +F ++ +  +
Sbjct: 510 INNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 569

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +P+VV + + +  Y +       L +F EM+  G  P
Sbjct: 570 EPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 606



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 71/155 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M   GI P +  +  L+  Y K G + +   +  +M + G+KP T + N +++
Sbjct: 557 ALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIID 616

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+    +     M +   A +  TYNI++  + +    ++   LF+ L A  +K 
Sbjct: 617 GLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKI 676

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           D++T  + +A   + +      ++F  +  +G  P
Sbjct: 677 DIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 711



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 15/221 (6%)

Query: 38  LLLQHTPNLF----VFIFSIYF---------SDAHAVFEEMKRLG--ITPTMKSHMLLLT 82
           +LL  TP L     VF +SI             A  +   M   G   +P + ++  ++ 
Sbjct: 172 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVID 231

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
            + K G+V K   +  +M + G+ PD    +S+++   +     K E  L  M       
Sbjct: 232 CFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLP 291

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D  TYN LI  Y   G  ++   +F+ +    + PDVVT    + +  +    +   ++F
Sbjct: 292 DNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVF 351

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + M   G  PD  + K++++  +++  +  +T L   M  D
Sbjct: 352 DTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGD 392



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/211 (17%), Positives = 84/211 (39%), Gaps = 38/211 (18%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL------- 122
           ++PT  ++ +L+   ++            Q+ ++GL+ D  + N +L  +          
Sbjct: 111 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 170

Query: 123 -----------------------------GQFEKMEEVLTAMEKGSY--AADISTYNILI 151
                                        G+  + +++L  M +G    + D+  Y  +I
Sbjct: 171 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVI 230

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           + + + G + K   LF+ +  + + PD+VT++S + A  + +   +      +M++ G  
Sbjct: 231 DCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVL 290

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           PD  T   LI   SS  Q ++   + + M +
Sbjct: 291 PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 321


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 95/188 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V +EM + G+ P   ++ LL+ AY++ G       ++ +M   G+KP ++V + 
Sbjct: 175 LKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 234

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G+++K   VL  M       D   YN++I+ +G+   +      F  +  + 
Sbjct: 235 ILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEG 294

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDVVTW + + A+ +   + R +E+F+EM ++ C     T  ++I+    E + E V 
Sbjct: 295 IEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVE 354

Query: 235 TLVRTMHK 242
            ++  M +
Sbjct: 355 AMLAEMKE 362



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            A+  EMK  G+ P + ++  L+  Y ++G   +    I  M   GLKP + + ++++N 
Sbjct: 354 EAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNA 413

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           Y + G  +    V+ AM      A     N LIN +G    I +   + Q +    L+PD
Sbjct: 414 YAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPD 473

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           V+T+T+ + A  R + + +   I+EEMI +GC PD     +L SA
Sbjct: 474 VITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSA 518



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 91/199 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AV  EM   G+ P    + +++  + K   +       ++M + G++PD    N+
Sbjct: 245 WQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNT 304

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ ++  E+   M + +     +TYNI+IN+ G     E +E +   +  + 
Sbjct: 305 LIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQG 364

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+++T+T+ +  Y R   ++  ++  E M   G  P       L++A +     +   
Sbjct: 365 LVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHAL 424

Query: 235 TLVRTMHKDMKTALPIYFN 253
            +V+ M  D   A  +  N
Sbjct: 425 NVVKAMRADGLEASTVVLN 443



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 2/205 (0%)

Query: 41  QHTPNLFVFIFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  Y    HA+  F+ M+  GI P + +   L+ A+ K G   +   + +
Sbjct: 264 RHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFD 323

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +S     T   N M+NL G   ++E +E +L  M++     +I TY  L+++YGR G
Sbjct: 324 EMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSG 383

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             ++     +++ A  LKP    + + + AY+++ L    L + + M   G         
Sbjct: 384 RFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN 443

Query: 219 VLISACSSEDQIEQVTTLVRTMHKD 243
            LI+A   + +I +  ++++ M ++
Sbjct: 444 SLINAFGEDRRIAEAFSVLQFMKEN 468



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 1/147 (0%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFE 126
           +G+TP   +   L+++      VA+ E +  +   +G +KP T   N++L  Y ++G  +
Sbjct: 117 IGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLK 176

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             E+VL  M +   A D +TY++L++ Y R G  E    L + + A  +KP    ++  L
Sbjct: 177 NAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 236

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           A +  +  +++   +  EM  +G  PD
Sbjct: 237 AGFRDRGEWQKAFAVLREMHASGVRPD 263


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 5/195 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF+EM+R  I P + +  +L+ +  K G + +   V + M   G  PD F  N 
Sbjct: 318 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 377

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y   G    M ++   M     A D  T+N+LI  Y   G ++K   +F  +    
Sbjct: 378 MLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 437

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPDVVT+ + +AA  R       +E F +MID G  PD      LI    +   + +  
Sbjct: 438 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 497

Query: 235 TLVRT-----MHKDM 244
            L+       MH D+
Sbjct: 498 ELISEIMNNGMHLDI 512



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 4/184 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   +M    + P   ++  L+  YS TG   +   V  +M +  + PD   ++ ++ 
Sbjct: 286 AEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 345

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  +V   M       D+ +YNI++N Y   G +  M  LF  +    + P
Sbjct: 346 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 405

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
           D  T+   + AY+   +  + + IF EM D G  PD  T + +I+A       +D +E+ 
Sbjct: 406 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 465

Query: 234 TTLV 237
             ++
Sbjct: 466 NQMI 469



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM + GI P + ++  ++ A  K   + K E  + QM    + P+ +  N+++ 
Sbjct: 251 ACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIY 310

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ+++   V   M + S   D+ T ++L+    + G I++   +F ++  K   P
Sbjct: 311 GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNP 370

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++   L  Y+ K       ++F+ M+  G  PD  T  VLI A ++   +++   + 
Sbjct: 371 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIF 430

Query: 238 RTMH 241
             M 
Sbjct: 431 NEMR 434



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 81/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+  G+ P + ++  ++ A  + G +       NQM   G+ PD +  N ++ 
Sbjct: 426 AMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQ 485

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G   K +E+++ +       DI  ++ +IN   + G +   + +F       L P
Sbjct: 486 GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 545

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V ++  +  Y       + L +F+ M+ AG  P+      L++      +I++  +L 
Sbjct: 546 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 605

Query: 238 RTM 240
           R M
Sbjct: 606 REM 608



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 101/248 (40%), Gaps = 41/248 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M   GI P +  +  L+  Y K G + +   +  +M + G+KP T + + +++
Sbjct: 566 ALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIID 625

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL--------------------------- 150
              + G+    +     M +   A DI TYNI+                           
Sbjct: 626 GLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI 685

Query: 151 ----INIYGRGGF----IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
               +N    G F    +E+ + LF S+   RL P+VVT++  +    ++ L     ++F
Sbjct: 686 NIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMF 745

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-----RTMHKDMKTALPIYFNLYGE 257
             M +AGC P+      ++     +++I +    +     R    +  TA+ +  +L+  
Sbjct: 746 SSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAM-LLVDLFSS 804

Query: 258 KGVARSNL 265
           KG  R  +
Sbjct: 805 KGTCREQI 812



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 74/157 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F +M   G+ P   ++  L+  +   G++ K + +I+++  +G+  D    +S+
Sbjct: 459 DDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 518

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +LG+    + +           D   Y++L++ Y   G +EK   +F ++ +  +
Sbjct: 519 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 578

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +P+VV + + +  Y +       L +F EM+  G  P
Sbjct: 579 EPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP 615



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 15/221 (6%)

Query: 38  LLLQHTPNLF----VFIFSIYF---------SDAHAVFEEMKRLG--ITPTMKSHMLLLT 82
           +LL  TP L     VF +SI             A  +   M   G   +P + ++  ++ 
Sbjct: 181 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVID 240

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
            + K G+V K   +  +M + G+ PD    NS+++   +    +K E  L  M       
Sbjct: 241 GFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLP 300

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           +  TYN LI  Y   G  ++   +F+ +    + PDVVT +  + +  +    +   ++F
Sbjct: 301 NNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVF 360

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + M   G  PD  +  ++++  +++  +  +T L   M  D
Sbjct: 361 DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD 401



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 49/104 (47%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++    K G V   + + +     GL PD  V + +++ Y  +G+ EK   V  AM    
Sbjct: 518 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 577

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
              ++  Y  L+N Y + G I++   LF+ +  + +KP  + ++
Sbjct: 578 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 621



 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/211 (17%), Positives = 83/211 (39%), Gaps = 38/211 (18%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----------------------- 106
           ++PT  ++ +L+   ++            Q+ ++GL+                       
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 107 -------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY--AADISTYNILI 151
                        PD F  + +L      G+  + +++L  M +G    + ++  YN +I
Sbjct: 180 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 239

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           + + + G + K   LF+ +  + + PD+VT+ S + A  + +   +      +M++    
Sbjct: 240 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 299

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           P+  T   LI   SS  Q ++   + + M +
Sbjct: 300 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 330


>gi|168024876|ref|XP_001764961.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683770|gb|EDQ70177.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 1/177 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH   +  ++ G    + S   L+ AY+K  +    E  + +M  +G        NS+L+
Sbjct: 555 AHKALKLAQQFGSADKI-SFSTLVHAYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILD 613

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG+ GQ EK+ +VL  ME      D+++YNILIN YG+   I +ME LF+++  + + P
Sbjct: 614 AYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQEEGVVP 673

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           D  T+ + +  Y       R +  F+ M DAG  PD  T  +L+S       I++  
Sbjct: 674 DRWTYNTIIRTYGFADYPDRAVYWFKAMQDAGISPDRVTYMILVSTFERAGNIDEAA 730



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 15/229 (6%)

Query: 24  NYLPYPSHFMLINFLLLQHT---PNLFVFIFSIYF-------SDAHAVFEEMKRLGITPT 73
           NY+ Y +    I F L+  T   P++  +   +         ++A +VF  M   G+   
Sbjct: 61  NYVDYAT----ITFQLMLQTGVLPSILTYSMMLLLYQRHRKVAEAESVFSHMLNSGVQAV 116

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
           + ++ +++  Y++ G   K E ++ +M ++ + PD       LN YG+ G+ E+ E ++ 
Sbjct: 117 V-AYSVMIALYNREGLFEKSEQIVTEMRRNNVTPDRDNWLKQLNTYGQQGKIEEAERIMD 175

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            +E+   +  +  YN +I  YG+    +K   L + +  + L PD +T++  + A  R  
Sbjct: 176 TVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVPDSITYSCMIGACGRVG 235

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             +  L  F EM      P       LIS       +E +  ++  M K
Sbjct: 236 KLKEALSWFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVITEMKK 284



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 82/183 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  +  +  EM+R  +TP   + +  L  Y + G + + E +++ + +SG+       NS
Sbjct: 132 FEKSEQIVTEMRRNNVTPDRDNWLKQLNTYGQQGKIEEAERIMDTVEESGMSLGLVGYNS 191

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+  YG+   ++K   ++  M +     D  TY+ +I   GR G +++    F  +    
Sbjct: 192 MITAYGKACLYDKAARLVEKMREEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMKRLE 251

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP    + + ++ Y + K     + +  EM   GC PD  T    + A      I+ VT
Sbjct: 252 IKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLIKDVT 311

Query: 235 TLV 237
            ++
Sbjct: 312 EIL 314



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A +VF+EM+  G+TP+++S   ++  Y   G+V + EG+ + +  S  + D F  N 
Sbjct: 377 FDGAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNV 436

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+N+Y R    E   +V   ME+     D  TY+ ++ +  +     + E ++  L    
Sbjct: 437 MINVYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLRMCQKCNLPAQAEEIYWRLRNSD 496

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           ++ D V     L   ++        ++F+EMID G  P   T  V+I 
Sbjct: 497 VELDEVMCNCVLNTCAKFLPLEEMHKLFQEMIDVGYVPYNITFNVMID 544



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 68/137 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  A   EM+  G   +++++  +L AY K G + K   V+ +M  SG++ D    N 
Sbjct: 586 FPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNI 645

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+     +ME +   M++     D  TYN +I  YG   + ++    F+++    
Sbjct: 646 LINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWFKAMQDAG 705

Query: 175 LKPDVVTWTSRLAAYSR 191
           + PD VT+   ++ + R
Sbjct: 706 ISPDRVTYMILVSTFER 722



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 4/205 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A + F EMKRL I P   +   L++ Y K  +V     VI +M K G KPD   +++
Sbjct: 237 LKEALSWFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDWQTLDA 296

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +  Y R G  + + E+L  +    +  +  +Y  L+++Y +    ++   +F ++    
Sbjct: 297 AVRAYDRAGLIKDVTEILNLLRDAGWVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAG 356

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P      S +  +   +++     +F+EM  AG  P   ++  +I        +++  
Sbjct: 357 MAPKEYMCRSLICTFRDAEMFDGAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAE 416

Query: 235 TLVRTMHKDMKT----ALPIYFNLY 255
            L  ++   +K     A  +  N+Y
Sbjct: 417 GLFHSLRSSVKRLDIFAYNVMINVY 441



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 78/187 (41%), Gaps = 1/187 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             + H +F+EM  +G  P   +  +++  Y K G   +    +    + G   D    ++
Sbjct: 517 LEEMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERAHKALKLAQQFG-SADKISFST 575

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y +   F  ME  L  M+   Y + +  YN +++ YG+ G +EK+  +   +    
Sbjct: 576 LVHAYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSG 635

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ D+ ++   +  Y +  +      +F  M + G  PD  T   +I      D  ++  
Sbjct: 636 MRMDLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAV 695

Query: 235 TLVRTMH 241
              + M 
Sbjct: 696 YWFKAMQ 702



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 77/167 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + + ++  G++  +  +  ++TAY K     K   ++ +M +  L PD+   + 
Sbjct: 167 IEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVPDSITYSC 226

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+   GR+G+ ++       M++       S +N LI++YG+   +E +  +   +    
Sbjct: 227 MIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYG 286

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            KPD  T  + + AY R  L +   EI   + DAG   + G+   L+
Sbjct: 287 CKPDWQTLDAAVRAYDRAGLIKDVTEILNLLRDAGWVEETGSYGTLL 333



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 79/187 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  + E+M+   + P   ++  ++ A  + G + +      +M +  +KP +   N+
Sbjct: 202 YDKAARLVEKMREEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNT 261

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++LYG+    E +  V+T M+K     D  T +  +  Y R G I+ +  +   L    
Sbjct: 262 LISLYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLIKDVTEILNLLRDAG 321

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              +  ++ + L  Y +  L +  L IF  M  AG  P     + LI      +  +   
Sbjct: 322 WVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSLICTFRDAEMFDGAK 381

Query: 235 TLVRTMH 241
           ++ + M 
Sbjct: 382 SVFKEMQ 388



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 4/208 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M++ G+ P       L+  +         + V  +M  +G+ P      +M+
Sbjct: 344 EALRIFLAMRKAGMAPKEYMCRSLICTFRDAEMFDGAKSVFKEMQVAGVTPSLESSCTMI 403

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG  G  ++ E +  ++       DI  YN++IN+Y R    E    +++ +    L 
Sbjct: 404 YVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNVMINVYMRCDMPEGAIKVYKLMEEDHLL 463

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+ S L    +  L  +  EI+  + ++    D      +++ C+    +E++  L
Sbjct: 464 PDAYTYHSMLRMCQKCNLPAQAEEIYWRLRNSDVELDEVMCNCVLNTCAKFLPLEEMHKL 523

Query: 237 VRTMHKDMKTALPIYFN----LYGEKGV 260
            + M         I FN    LYG+ G+
Sbjct: 524 FQEMIDVGYVPYNITFNVMIDLYGKAGM 551



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/168 (19%), Positives = 70/168 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +   ++  G      S+  LL  Y K     +   +   M K+G+ P  ++  S++
Sbjct: 309 DVTEILNLLRDAGWVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSLI 368

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +     F+  + V   M+       + +   +I +YG  G +++ EGLF SL +   +
Sbjct: 369 CTFRDAEMFDGAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKR 428

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            D+  +   +  Y R  +    +++++ M +    PD  T   ++  C
Sbjct: 429 LDIFAYNVMINVYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLRMC 476


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 5/195 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF+EM+R  I P + +  +L+ +  K G + +   V + M   G  PD F  N 
Sbjct: 308 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 367

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y   G    M ++   M     A D  T+N+LI  Y   G ++K   +F  +    
Sbjct: 368 MLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 427

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPDVVT+ + +AA  R       +E F +MID G  PD      LI    +   + +  
Sbjct: 428 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 487

Query: 235 TLVRT-----MHKDM 244
            L+       MH D+
Sbjct: 488 ELISEIMNNGMHLDI 502



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 4/184 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   +M    + P   ++  L+  YS TG   +   V  +M +  + PD   ++ ++ 
Sbjct: 276 AEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 335

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  +V   M       D+ +YNI++N Y   G +  M  LF  +    + P
Sbjct: 336 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 395

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
           D  T+   + AY+   +  + + IF EM D G  PD  T + +I+A       +D +E+ 
Sbjct: 396 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 455

Query: 234 TTLV 237
             ++
Sbjct: 456 NQMI 459



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM + GI P + ++  ++ A  K   + K E  + QM    + P+ +  N+++ 
Sbjct: 241 ACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIY 300

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ+++   V   M + S   D+ T ++L+    + G I++   +F ++  K   P
Sbjct: 301 GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNP 360

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++   L  Y+ K       ++F+ M+  G  PD  T  VLI A ++   +++   + 
Sbjct: 361 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIF 420

Query: 238 RTMH 241
             M 
Sbjct: 421 NEMR 424



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 80/183 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+  G+ P + ++  ++ A  + G +       NQM   G+ PD +  N ++ 
Sbjct: 416 AMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQ 475

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G   K +E+++ +       DI  ++ +IN   + G +   + +F       L P
Sbjct: 476 GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 535

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V +   +  Y       + L +F+ M+ AG  P+      L++      +I++  +L 
Sbjct: 536 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 595

Query: 238 RTM 240
           R M
Sbjct: 596 REM 598



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 74/157 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F +M   G+ P   ++  L+  +   G++ K + +I+++  +G+  D    +S+
Sbjct: 449 DDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 508

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +LG+    + +           D   YN+L++ Y   G +EK   +F ++ +  +
Sbjct: 509 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGI 568

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +P+VV + + +  Y +       L +F EM+  G  P
Sbjct: 569 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKP 605



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 99/248 (39%), Gaps = 41/248 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M   GI P +  +  L+  Y K G + +   +  +M + G+KP T + + +++
Sbjct: 556 ALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIID 615

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL--------------------------- 150
                G+    +     M +   A DI TYNI+                           
Sbjct: 616 GLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI 675

Query: 151 ----INIYGRGGF----IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
               +N    G F    +E+ + LF S+   RL P VVT++  +    ++ L     ++F
Sbjct: 676 NIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMF 735

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-----RTMHKDMKTALPIYFNLYGE 257
             M +AGC P+      ++     +++I +    +     R    +  TA+ +  +L+  
Sbjct: 736 SSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAM-LLVDLFSS 794

Query: 258 KGVARSNL 265
           KG  R  +
Sbjct: 795 KGTCREQI 802



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 15/221 (6%)

Query: 38  LLLQHTPNLF----VFIFSIYF---------SDAHAVFEEMKRLG--ITPTMKSHMLLLT 82
           +LL  TP L     VF +SI             A  +   M   G   +P + ++  ++ 
Sbjct: 171 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVID 230

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
            + K G+V K   +  +M + G+ PD    NS+++   +    +K E  L  M       
Sbjct: 231 GFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLP 290

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           +  TYN LI  Y   G  ++   +F+ +    + PDVVT +  + +  +    +   ++F
Sbjct: 291 NNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVF 350

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + M   G  PD  +  ++++  +++  +  +T L   M  D
Sbjct: 351 DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD 391



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 49/104 (47%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++    K G V   + + +     GL PD  V N +++ Y  +G+ EK   V  AM    
Sbjct: 508 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 567

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
              ++  Y  L+N Y + G I++   LF+ +  + +KP  + ++
Sbjct: 568 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 611



 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 36/211 (17%), Positives = 83/211 (39%), Gaps = 38/211 (18%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----------------------- 106
           ++PT  ++ +L+   ++            Q+ ++GL+                       
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 107 -------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY--AADISTYNILI 151
                        PD F  + +L      G+  + +++L  M +G    + ++  YN +I
Sbjct: 170 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 229

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           + + + G + K   LF+ +  + + PD+VT+ S + A  + +   +      +M++    
Sbjct: 230 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 289

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           P+  T   LI   SS  Q ++   + + M +
Sbjct: 290 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 320


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 5/195 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF+EM+R  I P + +  +L+ +  K G + +   V + M   G  PD F  N 
Sbjct: 305 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 364

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y   G    M ++   M     A D  T+N+LI  Y   G ++K   +F  +    
Sbjct: 365 MLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 424

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPDVVT+ + +AA  R       +E F +MID G  PD      LI    +   + +  
Sbjct: 425 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 484

Query: 235 TLVRT-----MHKDM 244
            L+       MH D+
Sbjct: 485 ELISEIMNNGMHLDI 499



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 4/184 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   +M    + P   ++  L+  YS TG   +   V  +M +  + PD   ++ ++ 
Sbjct: 273 AEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 332

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  +V   M       D+ +YNI++N Y   G +  M  LF  +    + P
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
           D  T+   + AY+   +  + + IF EM D G  PD  T + +I+A       +D +E+ 
Sbjct: 393 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452

Query: 234 TTLV 237
             ++
Sbjct: 453 NQMI 456



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM + GI P + ++  ++ A  K   + K E  + QM    + P+ +  N+++ 
Sbjct: 238 ACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIY 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ+++   V   M + S   D+ T ++L+    + G I++   +F ++  K   P
Sbjct: 298 GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNP 357

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++   L  Y+ K       ++F+ M+  G  PD  T  VLI A ++   +++   + 
Sbjct: 358 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIF 417

Query: 238 RTMH 241
             M 
Sbjct: 418 NEMR 421



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 81/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+  G+ P + ++  ++ A  + G +       NQM   G+ PD +  N ++ 
Sbjct: 413 AMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQ 472

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G   K +E+++ +       DI  ++ +IN   + G +   + +F       L P
Sbjct: 473 GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V ++  +  Y       + L +F+ M+ AG  P+      L++      +I++  +L 
Sbjct: 533 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 592

Query: 238 RTM 240
           R M
Sbjct: 593 REM 595



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 74/157 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F +M   G+ P   ++  L+  +   G++ K + +I+++  +G+  D    +S+
Sbjct: 446 DDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 505

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +LG+    + +           D   Y++L++ Y   G +EK   +F ++ +  +
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 565

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +P+VV + + +  Y +       L +F EM+  G  P
Sbjct: 566 EPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP 602



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 35/191 (18%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M   GI P +  +  L+  Y K G + +   +  +M + G+KP T + + +++
Sbjct: 553 ALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIID 612

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL--------------------------- 150
              + G+    +     M +   A DI TYNI+                           
Sbjct: 613 GLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI 672

Query: 151 ----INIYGRGGF----IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
               +N    G F    +E+ + LF S+   RL P VVT++  +    ++ L     ++F
Sbjct: 673 NIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMF 732

Query: 203 EEMIDAGCYPD 213
             M +AGC P+
Sbjct: 733 SSMQNAGCEPN 743



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 15/221 (6%)

Query: 38  LLLQHTPNLF----VFIFSIYF---------SDAHAVFEEMKRLG--ITPTMKSHMLLLT 82
           +LL  TP L     VF +SI             A  +   M   G   +P + ++  ++ 
Sbjct: 168 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVID 227

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
            + K G+V K   +  +M + G+ PD    NS+++   +    +K E  L  M       
Sbjct: 228 GFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLP 287

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           +  TYN LI  Y   G  ++   +F+ +    + PDVVT +  + +  +    +   ++F
Sbjct: 288 NNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVF 347

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + M   G  PD  +  ++++  +++  +  +T L   M  D
Sbjct: 348 DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD 388



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 49/104 (47%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++    K G V   + + +     GL PD  V + +++ Y  +G+ EK   V  AM    
Sbjct: 505 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
              ++  Y  L+N Y + G I++   LF+ +  + +KP  + ++
Sbjct: 565 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 608



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/154 (19%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F EM   GI   + ++ ++L    K     +   +  ++    +K +   +N+M++
Sbjct: 623 AKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMID 682

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + E+ +++  ++ +      + TY+I+I    + G +E+ E +F S+     +P
Sbjct: 683 GMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 742

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           +     SRL  +  ++L ++      E++ AG Y
Sbjct: 743 N-----SRLLNHVVRELLKK-----NEIVRAGAY 766



 Score = 40.8 bits (94), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 36/211 (17%), Positives = 83/211 (39%), Gaps = 38/211 (18%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----------------------- 106
           ++PT  ++ +L+   ++            Q+ ++GL+                       
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 107 -------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY--AADISTYNILI 151
                        PD F  + +L      G+  + +++L  M +G    + ++  YN +I
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 226

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           + + + G + K   LF+ +  + + PD+VT+ S + A  + +   +      +M++    
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 286

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           P+  T   LI   SS  Q ++   + + M +
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 317


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 96/195 (49%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM+ LG++P   +   +L  + K G +A     I+ M +  ++PD  + N ++++Y 
Sbjct: 321 LMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYR 380

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           RLG+ E    V  AM K   + +++TYN LI  + R G      GL   +  K ++ DVV
Sbjct: 381 RLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVV 440

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A   K   R+ +++ +EM + G  P+  T   +I     +  I+    +   M
Sbjct: 441 TYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500

Query: 241 HKDMKTALPIYFNLY 255
            K  K A  + +N++
Sbjct: 501 EKCRKRANVVTYNVF 515



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 88/182 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VFEEMK+ GI  ++ ++  L++     G V +   ++ +M   GL P+      +L  + 
Sbjct: 286 VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFC 345

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G      + +  M + +   D+  YNILI++Y R G +E    + +++  K + P+V 
Sbjct: 346 KKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVT 405

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  +SR   +R    + +EM + G   D  T  VLI A   + ++ +   L+  M
Sbjct: 406 TYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM 465

Query: 241 HK 242
            +
Sbjct: 466 SE 467



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 77/162 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA AV E M + GI+P + ++  L+T +S++G+     G++++M + G++ D    N 
Sbjct: 385 MEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G+  K  ++L  M +     +  TYN +I  +   G I+    +   +   R
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            + +VVT+   +  + +        ++  EM+D    P+G T
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 16/165 (9%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S  +  A  + +EMK  GI   + ++ +L+ A    G V K   ++++M + GL+P+
Sbjct: 414 FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPN 473

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N+++  +   G  +   E+ T MEK    A++ TYN+ I  + + G +++   L  
Sbjct: 474 HLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLN 533

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +  K L P+ +T+ +                I E M++ G  PD
Sbjct: 534 EMLDKCLVPNGITYET----------------IKEGMMEKGYTPD 562



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 3/173 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P+  S   LL        V   E       +  + PD +  N++++   R+GQ  K  +V
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 132 LTAMEKGSYAADISTYNILINIY---GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
              ++    A  ++TYN LI+ Y   G  G +  ++ L + +    + P  VT+   +  
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           Y +       + +FEEM   G      T   LIS   SE ++E+   L+  M 
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEME 326



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 65/151 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA+   + M    + P +  + +L+  Y + G +     V   M K G+ P+    N 
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNC 409

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R G +     +L  M++    AD+ TYN+LI      G + K   L   +    
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           L+P+ +T+ + +  +  K   +   EI   M
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 10/210 (4%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK---TGNVAK 92
           +P+++ F   I           A  V +++K  G+ P++ ++  L+  Y K    GN+  
Sbjct: 188 SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYH 247

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            + ++ +M ++G+ P       ++N Y +         V   M++   AA + TYN LI+
Sbjct: 248 VDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLIS 307

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
                G +E+   L + +    L P+ +T+   L  + +K +     +  + M +    P
Sbjct: 308 GLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEP 367

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           D     +LI       ++E    +   M K
Sbjct: 368 DVVIYNILIDVYRRLGKMEDAMAVKEAMAK 397


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 96/195 (49%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM+ LG++P   +   +L  + K G +A     I+ M +  ++PD  + N ++++Y 
Sbjct: 321 LMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYR 380

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           RLG+ E    V  AM K   + +++TYN LI  + R G      GL   +  K ++ DVV
Sbjct: 381 RLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVV 440

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A   K   R+ +++ +EM + G  P+  T   +I     +  I+    +   M
Sbjct: 441 TYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500

Query: 241 HKDMKTALPIYFNLY 255
            K  K A  + +N++
Sbjct: 501 EKCRKRANVVTYNVF 515



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 88/182 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VFEEMK+ GI  ++ ++  L++     G V +   ++ +M   GL P+      +L  + 
Sbjct: 286 VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFC 345

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G      + +  M + +   D+  YNILI++Y R G +E    + +++  K + P+V 
Sbjct: 346 KKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVT 405

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  +SR   +R    + +EM + G   D  T  VLI A   + ++ +   L+  M
Sbjct: 406 TYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM 465

Query: 241 HK 242
            +
Sbjct: 466 SE 467



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 77/162 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA AV E M + GI+P + ++  L+T +S++G+     G++++M + G++ D    N 
Sbjct: 385 MEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G+  K  ++L  M +     +  TYN +I  +   G I+    +   +   R
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            + +VVT+   +  + +        ++  EM+D    P+G T
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 16/165 (9%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S  +  A  + +EMK  GI   + ++ +L+ A    G V K   ++++M + GL+P+
Sbjct: 414 FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPN 473

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N+++  +   G  +   E+ T MEK    A++ TYN+ I  + + G +++   L  
Sbjct: 474 HLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLN 533

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +  K L P+ +T+ +                I E M++ G  PD
Sbjct: 534 EMLDKCLVPNGITYET----------------IKEGMMEKGYTPD 562



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 3/173 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P+  S   LL        V   E       +  + PD +  N++++   R+GQ  K  +V
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 132 LTAMEKGSYAADISTYNILINIY---GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
              ++    A  ++TYN LI+ Y   G  G +  ++ L + +    + P  VT+   +  
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           Y +       + +FEEM   G      T   LIS   SE ++E+   L+  M 
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEME 326



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 65/151 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA+   + M    + P +  + +L+  Y + G +     V   M K G+ P+    N 
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNC 409

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R G +     +L  M++    AD+ TYN+LI      G + K   L   +    
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           L+P+ +T+ + +  +  K   +   EI   M
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 10/210 (4%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK---TGNVAK 92
           +P+++ F   I           A  V +++K  G+ P++ ++  L+  Y K    GN+  
Sbjct: 188 SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYH 247

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            + ++ +M ++G+ P       ++N Y +         V   M++   AA + TYN LI+
Sbjct: 248 VDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLIS 307

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
                G +E+   L + +    L P+ +T+   L  + +K +     +  + M +    P
Sbjct: 308 GLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEP 367

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           D     +LI       ++E    +   M K
Sbjct: 368 DVVIYNILIDVYRRLGKMEDAMAVKEAMAK 397


>gi|359490053|ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
           chloroplastic-like [Vitis vinifera]
 gi|297745081|emb|CBI38673.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 1/184 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V+  S  F  A  V    ++ G+   + S+  ++ AY ++ ++ K    + QM  +G 
Sbjct: 702 LDVYGKSRLFKKARKVLWLARKRGLVDVI-SYNTIIAAYGQSKDLKKMLSTVRQMQFNGF 760

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
                V N ML+ YG+ GQ E    VL  M++ S A+D  TYNI+INIYG  G+IE++  
Sbjct: 761 SVSLEVYNCMLDSYGKEGQIESFRSVLRRMKESSCASDHYTYNIMINIYGEQGWIEEVAN 820

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +   L    L PD+ ++ + + AY    +    + + +EM + G  PD  T   LI+A  
Sbjct: 821 VLTELKESGLGPDLCSYNTLIKAYGIAGMVEDAVVLVKEMRENGIQPDRITYINLINALR 880

Query: 226 SEDQ 229
             D+
Sbjct: 881 KNDE 884



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 95/188 (50%), Gaps = 12/188 (6%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  F  + S+Y      +D+   F +M+  GIT    ++  ++T Y++     K E V
Sbjct: 241 PNVATFGMVMSLYQKGWNVADSEYAFSQMRSFGIT-CQSAYSAMITIYTRMSLYDKAEEV 299

Query: 97  IN--QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           I+  Q  K  L  + +++  +LN Y + G+ ++ E VL +M+   ++ +I  YN+LI  Y
Sbjct: 300 IDFIQEDKVILNLENWLV--LLNAYSQQGKLQEAERVLFSMQNAGFSPNIVAYNMLITGY 357

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           G+   ++  + +F++L    L+PD  T+ S +  + R + Y+     + E+   G  P+ 
Sbjct: 358 GKASNMDAAQHIFRNLKNVGLEPDESTYRSMIEGWGRAENYKEAEWYYNELKRLGFKPNS 417

Query: 215 GTAKVLIS 222
                +I+
Sbjct: 418 SNLYTMIN 425



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 1/162 (0%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  M   G+ P + +  ++++ Y K  NVA  E   +QM   G+   +   ++M+ +Y R
Sbjct: 231 FRLMLENGVRPNVATFGMVMSLYQKGWNVADSEYAFSQMRSFGITCQS-AYSAMITIYTR 289

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +  ++K EEV+  +++     ++  + +L+N Y + G +++ E +  S+      P++V 
Sbjct: 290 MSLYDKAEEVIDFIQEDKVILNLENWLVLLNAYSQQGKLQEAERVLFSMQNAGFSPNIVA 349

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +   +  Y +         IF  + + G  PD  T + +I  
Sbjct: 350 YNMLITGYGKASNMDAAQHIFRNLKNVGLEPDESTYRSMIEG 391



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 106/232 (45%), Gaps = 13/232 (5%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL +   +  IY     FSDA  ++ ++K   I+  M +  +++  Y K+G++     V
Sbjct: 552 PNLHIMCTMIDIYSTLGRFSDAENLYLKLKSSEISLDMIAFSIVVRMYVKSGSLKDACSV 611

Query: 97  INQM-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +  M  +  + PD ++   ML +Y + G  +K++++   + K     D   YN +IN   
Sbjct: 612 LETMDEQKNIVPDIYLFCDMLRIYQQCGMLDKLQDLYYRILKTGVTWDSEMYNCVINCCA 671

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R   ++++  LF  +      P+ +T    L  Y + +L+++  ++       G   D  
Sbjct: 672 RALPVDELSRLFDEMLLHGFAPNTITLNVMLDVYGKSRLFKKARKVLWLARKRGL-VDVI 730

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH-KDMKTALPIY---FNLYGEKGVARS 263
           +   +I+A      ++++ + VR M       +L +Y    + YG++G   S
Sbjct: 731 SYNTIIAAYGQSKDLKKMLSTVRQMQFNGFSVSLEVYNCMLDSYGKEGQIES 782



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 1/183 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM   G  P   +  ++L  Y K+    K   V+    K GL  D    N+++  YG
Sbjct: 682 LFDEMLLHGFAPNTITLNVMLDVYGKSRLFKKARKVLWLARKRGL-VDVISYNTIIAAYG 740

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +    +KM   +  M+   ++  +  YN +++ YG+ G IE    + + +       D  
Sbjct: 741 QSKDLKKMLSTVRQMQFNGFSVSLEVYNCMLDSYGKEGQIESFRSVLRRMKESSCASDHY 800

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  Y  +        +  E+ ++G  PD  +   LI A      +E    LV+ M
Sbjct: 801 TYNIMINIYGEQGWIEEVANVLTELKESGLGPDLCSYNTLIKAYGIAGMVEDAVVLVKEM 860

Query: 241 HKD 243
            ++
Sbjct: 861 REN 863



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/186 (16%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA  V +E +          + L++ +  + G +     + +QM     KP+  ++ +M
Sbjct: 503 DDAIKVLQEKQWKDTIFEDNLYHLVICSCKELGRLENAVKIYSQMPNK--KPNLHIMCTM 560

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP-AKR 174
           +++Y  LG+F   E +   ++    + D+  ++I++ +Y + G ++    + +++   K 
Sbjct: 561 IDIYSTLGRFSDAENLYLKLKSSEISLDMIAFSIVVRMYVKSGSLKDACSVLETMDEQKN 620

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD+  +   L  Y +  +  +  +++  ++  G   D      +I+ C+    +++++
Sbjct: 621 IVPDIYLFCDMLRIYQQCGMLDKLQDLYYRILKTGVTWDSEMYNCVINCCARALPVDELS 680

Query: 235 TLVRTM 240
            L   M
Sbjct: 681 RLFDEM 686



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 48/102 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V   M+  G +P + ++ +L+T Y K  N+   + +   +   GL+PD     S
Sbjct: 328 LQEAERVLFSMQNAGFSPNIVAYNMLITGYGKASNMDAAQHIFRNLKNVGLEPDESTYRS 387

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           M+  +GR   +++ E     +++  +  + S    +IN+  +
Sbjct: 388 MIEGWGRAENYKEAEWYYNELKRLGFKPNSSNLYTMINLQAK 429



 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  +K +G+ P   ++  ++  + +  N  + E   N++ + G KP++  + +M+N
Sbjct: 366 AQHIFRNLKNVGLEPDESTYRSMIEGWGRAENYKEAEWYYNELKRLGFKPNSSNLYTMIN 425

Query: 118 LYGRLGQFEKMEEVLTAMEK--GSYAADISTYNILINIYGRGGFIEKM 163
           L  +    E     L  M++    Y++ + T   L+  Y R G I+++
Sbjct: 426 LQAKYADGEDAARTLDDMKRIGCQYSSVLGT---LLQAYERAGRIDRV 470



 Score = 38.1 bits (87), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 41  QHTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
            +T N+ + I+    +  +   V  E+K  G+ P + S+  L+ AY   G V     ++ 
Sbjct: 799 HYTYNIMINIYGEQGWIEEVANVLTELKESGLGPDLCSYNTLIKAYGIAGMVEDAVVLVK 858

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQF 125
           +M ++G++PD     +++N   +  +F
Sbjct: 859 EMRENGIQPDRITYINLINALRKNDEF 885



 Score = 37.4 bits (85), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 1/161 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ A  K G+V         M ++G++P+      +++LY +       E   + M    
Sbjct: 214 LIYACYKQGHVELGTKWFRLMLENGVRPNVATFGMVMSLYQKGWNVADSEYAFSQMRSFG 273

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                S Y+ +I IY R    +K E +   +   ++  ++  W   L AYS++   +   
Sbjct: 274 ITCQ-SAYSAMITIYTRMSLYDKAEEVIDFIQEDKVILNLENWLVLLNAYSQQGKLQEAE 332

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +   M +AG  P+     +LI+       ++    + R +
Sbjct: 333 RVLFSMQNAGFSPNIVAYNMLITGYGKASNMDAAQHIFRNL 373


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 101/207 (48%), Gaps = 7/207 (3%)

Query: 43  TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+F F   I F        +A A+F  MK +G +P + ++  L+  Y K G++ + E 
Sbjct: 197 VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQ 256

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++++M KSG   D    N+++N + + G+ EK       M++    A++ T++  ++ + 
Sbjct: 257 LVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFC 316

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +++   LF  +  + + P+  T+TS +    +       + + +EM+  G  P+  
Sbjct: 317 KEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 376

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  V++     E ++ +   ++  M +
Sbjct: 377 TYTVMVDGLCKEGKVAEADNVLSLMER 403



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 83/181 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  + +EM   G+ P + ++ +++    K G VA+ + V++ M + G+K +  +  +
Sbjct: 356 LDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTT 415

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +      E+  ++L  M+      D+S Y  LI    +   +++ + L   +    
Sbjct: 416 LIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCG 475

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P+ V +T+ + A  +       + +  +++D+G  P+  T   LI        I +  
Sbjct: 476 LRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAI 535

Query: 235 T 235
           +
Sbjct: 536 S 536



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 79/185 (42%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A A+  ++   G  P + ++  L+    K G++++     N+M + GL P+     ++
Sbjct: 497 SEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTAL 556

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + ++G   K   ++  M     + D   Y  LI+ Y +   ++    L   +    L
Sbjct: 557 IDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGL 616

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D+  +T  ++ +    + +    +  EMI  G  PD      LI        +E+ ++
Sbjct: 617 QLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASS 676

Query: 236 LVRTM 240
           L   M
Sbjct: 677 LQNEM 681



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 70/153 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  +MK  G+   +  +  L+    K   V + + ++++M   GL+P+T +  ++++   
Sbjct: 432 LLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALF 491

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+  +   +L  +    +  ++ TY  LI+   + G I +    F  +    L P+V 
Sbjct: 492 KAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQ 551

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +T+ +  + +     + + +  EMID G   D
Sbjct: 552 AYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLD 584



 Score = 43.9 bits (102), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 52/113 (46%)

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           ++ T+NI+I+   + G + +   LF  + A    PDVVT+ S +  Y +        ++ 
Sbjct: 199 NVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLV 258

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
            EM  +GC  D  T   LI+  S   ++E+  +    M +    A  + F+ +
Sbjct: 259 SEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTF 311



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/158 (17%), Positives = 69/158 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A ++  +M   G+ P    +  ++ A  K G  ++   +++++  SG +P+     ++
Sbjct: 462 DEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCAL 521

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G   +       M +     ++  Y  LI+ + + G + K   L   +  K +
Sbjct: 522 IDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGM 581

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             D V +TS +  Y ++   +    +  +MI++G   D
Sbjct: 582 SLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLD 619



 Score = 37.4 bits (85), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 39/82 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA A+  +M   G+   +  +   ++ +     + +  GV+++M  +G+ PD  V N 
Sbjct: 601 LQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNC 660

Query: 115 MLNLYGRLGQFEKMEEVLTAME 136
           ++  Y +LG  E+   +   ME
Sbjct: 661 LIRKYQKLGNMEEASSLQNEME 682


>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 635

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 1/165 (0%)

Query: 58  AHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A   FE+MK      P + ++ +LL A+++  +V +   +   + +S + PD +  N ++
Sbjct: 175 ALGYFEKMKTTERCKPNIVTYNILLRAFAQARDVNQVNYLFKDLDESSVSPDIYTFNGVM 234

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YG+ G   +ME VL  M+      D+ TYN+LI+ YG+    +KME +F+SL   + K
Sbjct: 235 DGYGKNGMIREMESVLVRMKSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEK 294

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           P + T+ S +  Y + +L  +   +F+ M D G  P   T + LI
Sbjct: 295 PTLPTFNSMILNYGKARLKDKAENVFQNMTDMGYTPSFVTHESLI 339



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 35/218 (16%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+++    ++P + +   ++  Y K G + + E V+ +M  + +K D    N +++ YG
Sbjct: 214 LFKDLDESSVSPDIYTFNGVMDGYGKNGMIREMESVLVRMKSNQVKLDLITYNLLIDSYG 273

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  QF+KME+V  ++ +      + T+N +I  YG+    +K E +FQ++      P  V
Sbjct: 274 KKQQFDKMEQVFKSLSRSKEKPTLPTFNSMILNYGKARLKDKAENVFQNMTDMGYTPSFV 333

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEE---------------MIDAGC--------------- 210
           T  S +  Y         +E+F++               M+D  C               
Sbjct: 334 THESLIHMYGLCGCVSNAVELFDQLIESKVPIKVSTLNAMLDVYCINGLQQEADSLFTRA 393

Query: 211 -----YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
                +PD  T K+L  A +  +  E +  L++ M KD
Sbjct: 394 KSIKIFPDATTYKLLYKAYTKANSKELLDKLLKQMDKD 431



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 87/195 (44%), Gaps = 18/195 (9%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML--NLYGR---------LGQFEKM 128
           L++   K G +     + ++M  +G +PDT V NS++  +L+ R         LG FEKM
Sbjct: 123 LISVMGKKGQIRLAMWLFSEMRNTGCRPDTSVYNSLISAHLHSRDKSKALVKALGYFEKM 182

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           +             +I TYNIL+  + +   + ++  LF+ L    + PD+ T+   +  
Sbjct: 183 KTTERC------KPNIVTYNILLRAFAQARDVNQVNYLFKDLDESSVSPDIYTFNGVMDG 236

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM-KTA 247
           Y +  + R    +   M       D  T  +LI +   + Q +++  + +++ +   K  
Sbjct: 237 YGKNGMIREMESVLVRMKSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEKPT 296

Query: 248 LPIYFNLYGEKGVAR 262
           LP + ++    G AR
Sbjct: 297 LPTFNSMILNYGKAR 311



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 65/159 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     VF+ + R    PT+ +   ++  Y K     K E V   M   G  P      S
Sbjct: 278 FDKMEQVFKSLSRSKEKPTLPTFNSMILNYGKARLKDKAENVFQNMTDMGYTPSFVTHES 337

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++YG  G      E+   + +      +ST N ++++Y   G  ++ + LF    + +
Sbjct: 338 LIHMYGLCGCVSNAVELFDQLIESKVPIKVSTLNAMLDVYCINGLQQEADSLFTRAKSIK 397

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + PD  T+     AY++        ++ ++M      P+
Sbjct: 398 IFPDATTYKLLYKAYTKANSKELLDKLLKQMDKDSVIPN 436



 Score = 41.6 bits (96), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 12/191 (6%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLK-PDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           LL     K     +C  V   M +      D  V + ++++ G+ GQ      + + M  
Sbjct: 86  LLFEELGKHDKWLQCLEVFRWMQRQRWYIADNGVYSKLISVMGKKGQIRLAMWLFSEMRN 145

Query: 138 GSYAADISTYNILINIY----GRGGFIEKMEGLFQSLP-AKRLKPDVVTWTSRLAAYSRK 192
                D S YN LI+ +     +   + K  G F+ +   +R KP++VT+   L A+++ 
Sbjct: 146 TGCRPDTSVYNSLISAHLHSRDKSKALVKALGYFEKMKTTERCKPNIVTYNILLRAFAQA 205

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV-TTLVRTMHKDMKTALPIY 251
           +   +   +F+++ ++   PD  T   ++        I ++ + LVR     +K  L I 
Sbjct: 206 RDVNQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNGMIREMESVLVRMKSNQVKLDL-IT 264

Query: 252 FNL----YGEK 258
           +NL    YG+K
Sbjct: 265 YNLLIDSYGKK 275


>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 96/192 (50%), Gaps = 1/192 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM + GITP++ ++ LL+ A  K+G++A  E ++ +M   GL PD    N +++ +G+ G
Sbjct: 416 EMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKG 475

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             +K  E+L  M     + D  TYN LI+     G+  + + +   L  + L PDV+T+T
Sbjct: 476 YLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFT 535

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVRTMHK 242
             +  +S+K  +     ++  M +    PD  T   L++  C +    E     ++ +  
Sbjct: 536 DVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDA 595

Query: 243 DMKTALPIYFNL 254
            +K  L +Y NL
Sbjct: 596 GLKPDLVLYNNL 607



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 75/165 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  + + M+  G++P   ++  L+ +    G   + + +++++ + GL PD     
Sbjct: 476 YLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFT 535

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ + + G FE+   V + M +     D+ T + L+N Y R   +++   LF  +   
Sbjct: 536 DVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDA 595

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            LKPD+V + + +  +           +   MID G  P+  T +
Sbjct: 596 GLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHR 640



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 62/139 (44%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y ++A  +  E+ R G++P + +   ++  +SK GN  +   V + M +  +KPD    +
Sbjct: 511 YPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCS 570

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++LN Y R  + ++   +   M       D+  YN LI+ +   G +     L   +   
Sbjct: 571 ALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDD 630

Query: 174 RLKPDVVTWTSRLAAYSRK 192
              P++ T  +    + +K
Sbjct: 631 GFLPNITTHRAFALGFEKK 649



 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 86/203 (42%), Gaps = 7/203 (3%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EMK  GI   + ++ +++ A  K   V     ++ +M   G+  D+  ++S+++ Y 
Sbjct: 276 ILMEMKNYGIKADVIAYTIVIDALCKISCVKVATSLLFKMIHCGISVDSVSVSSVIDGYC 335

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ +K   +L      +   +I  Y+  +    + G + +    FQ +    L PD  
Sbjct: 336 KKGRSDKAINLLNFF---NVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCF 392

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +T  +  Y +     +  +   EM+  G  P   T  +LI+AC     +     L++ M
Sbjct: 393 CYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRM 452

Query: 241 HKDMKTALPIYFNL----YGEKG 259
             +      + FN     +G+KG
Sbjct: 453 MLEGLIPDVVTFNCLIDGFGKKG 475


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 6/200 (3%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK--CEGVINQMHKSGL 105
           V+  S  FS A  + + M++ G  P + S   L+ A  K+G +       +++ +  SGL
Sbjct: 234 VYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGL 293

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    N++L+   R    E   +V   ME      D+ TYN +I++YGR G   + E 
Sbjct: 294 RPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAER 353

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           LF  L  K   PD VT+ S L A++R++   +  E++++M   G   D  T   +I    
Sbjct: 354 LFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYG 413

Query: 226 SEDQIEQVTTLVRTMHKDMK 245
            + Q++    L   ++KDMK
Sbjct: 414 KQGQLD----LALQLYKDMK 429



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 97/207 (46%), Gaps = 7/207 (3%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
            TP+L  +  + S Y     +  A A+F  M R G +PT++S   LL A    G + +  
Sbjct: 783 RTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELY 842

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            V+ ++   G K     I  ML+ + R G   ++ ++ ++M+   Y   I  Y ++I + 
Sbjct: 843 VVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELL 902

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            +G  +   E +   +     K ++  W S L  Y+  + Y++ +++++ + ++G  PD 
Sbjct: 903 CKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDE 962

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMH 241
            T   LI     + + E+  +L++ M 
Sbjct: 963 TTYNTLIIMYCRDRRPEEGYSLMQQMR 989



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 81/157 (51%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            + + ++  MK  G  PT++ + +++    K   V   E ++++M ++  K +  + NSML
Sbjct: 875  EVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +Y  +  ++K  +V   +++     D +TYN LI +Y R    E+   L Q +    L 
Sbjct: 935  KMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLD 994

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            P + T+ S ++A+ ++K   +  ++FEE++  G   D
Sbjct: 995  PKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 8/211 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y      ++A  +F E++  G +P   ++  LL A+++  N  K + V
Sbjct: 330 PDLWTYNAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEV 389

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYG 155
             QM K G   D    N+++++YG+ GQ +   ++   M+  S    D  TY +LI+  G
Sbjct: 390 YQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLG 449

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +     +   L   +    +KP + T+++ +  Y++        + F  M+ +G  PD  
Sbjct: 450 KANRSVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNL 509

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
              V++      ++  +   L R M  D  T
Sbjct: 510 AYSVMLDVLLRGNETRKAWVLYRDMISDGHT 540



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 95/194 (48%), Gaps = 1/194 (0%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            + +++ ++M+ LG+ P + ++  L++A+ K   + + E +  ++   GLK D    ++M+
Sbjct: 980  EGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMM 1039

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +    G   K E++L  M+       ++T ++L+  Y   G  ++ E +  +L    ++
Sbjct: 1040 KISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVE 1099

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
               + ++S + AY R K Y+  +E   EM   G  PD       + A S   +  +V  L
Sbjct: 1100 LTTLPYSSVIDAYLRSKDYKSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKSEVMLL 1159

Query: 237  VRTMHKDMKTALPI 250
            ++ + +D+   +PI
Sbjct: 1160 LKAL-QDIGFDIPI 1172



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 88/182 (48%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              + + V EE++ +G   +  S +L+L A+++ GN+ +   + + M  +G  P   +   
Sbjct: 838  LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRM 897

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            M+ L  +  +    E +++ ME+ ++  +++ +N ++ +Y      +K   ++Q +    
Sbjct: 898  MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESG 957

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            L+PD  T+ + +  Y R +       + ++M + G  P   T K LISA   +  +EQ  
Sbjct: 958  LEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAE 1017

Query: 235  TL 236
             L
Sbjct: 1018 QL 1019



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 90  VAKCEGVINQMHKSGLKPDTF------------VINSMLNLYGRLGQFEKMEEVLTAMEK 137
           VA   GV+ + ++  L  + F            V N+M+ +Y R G+F K +E+L AM +
Sbjct: 194 VAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELLDAMRQ 253

Query: 138 GSYAADISTYNILINIYGRGGFIEK--MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
                D+ ++N LIN   + G +    +  L   +    L+PD +T+ + L+A SR    
Sbjct: 254 RGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYNTLLSACSRDSNL 313

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              +++FE+M    C PD  T   +IS
Sbjct: 314 EGAVKVFEDMEAHRCQPDLWTYNAMIS 340



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 91  AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME-KGSYAADISTYNI 149
           A+   V +++  SG +P   V  SM+ +Y +LG  E   +V+   E KG + A    Y  
Sbjct: 698 AEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQAETKGFHFACSPMYTD 757

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +I  YG+    +K E +  +L      PD+ TW S ++AY+    Y R   IF  M+  G
Sbjct: 758 IIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDG 817

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
             P   +   L+ A   + ++E++  +V  +     K  K+++ +  + +   G
Sbjct: 818 PSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAG 871



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 4/196 (2%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            DA  +  EM+       +     +L  Y+   +  K   V  ++ +SGL+PD    N+++
Sbjct: 910  DAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLI 969

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +Y R  + E+   ++  M        + TY  LI+ +G+   +E+ E LF+ L +K LK
Sbjct: 970  IMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLK 1029

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQV 233
             D   + + +          +  ++ + M +AG  P   T  +L+ + SS     + E+V
Sbjct: 1030 LDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKV 1089

Query: 234  TTLVRTMHKDMKTALP 249
             + ++    ++ T LP
Sbjct: 1090 LSNLKNTEVEL-TTLP 1104



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 7/191 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++++A  VF E++  G  P+      ++  Y K G       V+NQ    G     F  +
Sbjct: 696 HYAEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQAETKGFH---FACS 752

Query: 114 SM----LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
            M    +  YG+L  ++K E V+  + +     D+ T+N L++ Y   G  E+   +F +
Sbjct: 753 PMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNT 812

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +      P V +    L A            + EE+ D G      +  +++ A +    
Sbjct: 813 MMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGN 872

Query: 230 IEQVTTLVRTM 240
           I +V  +  +M
Sbjct: 873 IFEVNKIYSSM 883



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+  EM  +GI PT++++  L+  Y+K G   + E   + M +SG KPD    + ML
Sbjct: 456 EAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           ++  R  +  K   +   M    +    S Y ++I
Sbjct: 516 DVLLRGNETRKAWVLYRDMISDGHTPSHSLYELMI 550



 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 1/173 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ AY K     K E V+  + +SG  PD    NS+++ Y   G +E+   +   M +  
Sbjct: 758 IIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDG 817

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            +  + + N L++     G +E++  + + L     K    +    L A++R        
Sbjct: 818 PSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVN 877

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIY 251
           +I+  M  AG  P     +++I       ++     +V  M + + K  L I+
Sbjct: 878 KIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIW 930



 Score = 44.3 bits (103), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 46/88 (52%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            S A  + + MK  GI PT+ +  LL+ +YS +GN  + E V++ +  + ++  T   +S+
Sbjct: 1049 SKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPYSSV 1108

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
            ++ Y R   ++   E L  M+K     D
Sbjct: 1109 IDAYLRSKDYKSGIERLLEMKKEGLEPD 1136


>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
 gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
          Length = 519

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 111/214 (51%), Gaps = 5/214 (2%)

Query: 52  SIYFSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           S   + A   FE+MK +    PT+ ++ +LL A+++ G+  + + +   + +S + PD +
Sbjct: 175 SKALAKALGYFEKMKCIARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIY 234

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N +L+ YG+ G  ++ME VL  M+      D+ T+NILI+ YGR    +KME +F+SL
Sbjct: 235 TYNGVLDAYGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSL 294

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI---SACSSE 227
              + +P   T+ S +  Y + +L  +   + ++M + G  P+  T + LI   + C   
Sbjct: 295 LRSKERPTHPTFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIMMYAHCDCV 354

Query: 228 DQIEQV-TTLVRTMHKDMKTALPIYFNLYGEKGV 260
            +  QV   LV + +K   ++L    + Y   G+
Sbjct: 355 SKARQVFDELVSSQNKVQLSSLNSMLDAYCMNGL 388



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 24/198 (12%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML--NLYGR---------LGQFEKM 128
           L++   + G +     + +QM  SG KPDT V NS++  +L+ R         LG FEKM
Sbjct: 129 LISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALAKALGYFEKM 188

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           + +            I TYNIL+  + + G  ++++ LF+ L    + PD+ T+   L A
Sbjct: 189 KCIARCQ------PTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDA 242

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQV-TTLVRTMHKDM 244
           Y +  + +    +   M    C PD  T  +LI +   +   D++EQV  +L+R+  +  
Sbjct: 243 YGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPT 302

Query: 245 KTALPIYFNLYGEKGVAR 262
               P + ++    G AR
Sbjct: 303 H---PTFNSMITNYGKAR 317



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 7/207 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+++ +  +   Y       +  +V   MK     P + +  +L+ +Y +     K E 
Sbjct: 230 SPDIYTYNGVLDAYGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQ 289

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V   + +S  +P     NSM+  YG+    EK E V+  ME+  Y  +  T   LI +Y 
Sbjct: 290 VFKSLLRSKERPTHPTFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIMMYA 349

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
               + K   +F  L + + K  + +  S L AY    L+    ++ +  +     P+G 
Sbjct: 350 HCDCVSKARQVFDELVSSQNKVQLSSLNSMLDAYCMNGLHTEADQLLDTALQKCVVPNGS 409

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T K+L  A +  +    V  L++ M+K
Sbjct: 410 TYKLLYKAYTRANDKVLVQKLLKRMNK 436



 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 120 GRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           GR   + +  EV   M+K   Y AD   Y+ LI++ GR G I     LF  +     KPD
Sbjct: 98  GRRDAWLQCLEVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPD 157

Query: 179 VVTWTSRLAAY----SRKKLYRRCLEIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQV 233
              + S + A+     + K   + L  FE+M   A C P   T  +L+ A +     +QV
Sbjct: 158 TSVYNSLIGAHLHSRDKSKALAKALGYFEKMKCIARCQPTIVTYNILLRAFAQAGDTKQV 217

Query: 234 TTLVRTMHKDMKTALPIY-----FNLYGEKGVAR 262
             L + + + +  +  IY      + YG+ G+ +
Sbjct: 218 DILFKDLDESV-VSPDIYTYNGVLDAYGKNGMIK 250



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 63/159 (39%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     VF+ + R    PT  +   ++T Y K     K E V+ +M + G KP+      
Sbjct: 284 FDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQEC 343

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +Y       K  +V   +        +S+ N +++ Y   G   + + L  +   K 
Sbjct: 344 LIMMYAHCDCVSKARQVFDELVSSQNKVQLSSLNSMLDAYCMNGLHTEADQLLDTALQKC 403

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + P+  T+     AY+R        ++ + M   G  P+
Sbjct: 404 VVPNGSTYKLLYKAYTRANDKVLVQKLLKRMNKQGIVPN 442



 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 58/132 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V ++M+ LG  P   +   L+  Y+    V+K   V +++  S  K     +NSML+
Sbjct: 322 AEYVVKKMEELGYKPNYVTQECLIMMYAHCDCVSKARQVFDELVSSQNKVQLSSLNSMLD 381

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G   + +++L    +     + STY +L   Y R      ++ L + +  + + P
Sbjct: 382 AYCMNGLHTEADQLLDTALQKCVVPNGSTYKLLYKAYTRANDKVLVQKLLKRMNKQGIVP 441

Query: 178 DVVTWTSRLAAY 189
           +   +   L A+
Sbjct: 442 NKKFFLDALEAF 453


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 95/199 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +   M   GIT  +  + ++ +A  K   V+    + + M  +G+ PD F  N M
Sbjct: 407 TEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIM 466

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ +GR+G  +K  E+   ME GS   D+ TYN +IN  G+ G +++   LF+ +  K  
Sbjct: 467 ISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGY 526

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T++  +  + +         +F+EM+  GC P+  T  +L+       +  +   
Sbjct: 527 DPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHK 586

Query: 236 LVRTMHKDMKTALPIYFNL 254
              T+ +   T   I +++
Sbjct: 587 FYETLKQQGLTPDSITYSI 605



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 80/161 (49%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++++ M+  G+ P + ++ ++++++ + G V K   +  +M     KPD    NSM+N  
Sbjct: 446 SLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCL 505

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+ G  ++   +   M++  Y  D+ TY+ILI  +G+   ++    LF  + A+   P++
Sbjct: 506 GKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNI 565

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           VT+   L    R+       + +E +   G  PD  T  +L
Sbjct: 566 VTYNILLDCLERRGKTTEAHKFYETLKQQGLTPDSITYSIL 606



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH+VF  M          + + +L A        +   +++ M + G+  D  + N +
Sbjct: 372 SEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMI 431

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            +  G+L Q   M  +   M       D+ TYNI+I+ +GR G ++K   LF+ +     
Sbjct: 432 FSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSC 491

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDVVT+ S +    +         +F++M + G  PD  T  +LI      ++++   +
Sbjct: 492 KPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACS 551

Query: 236 LVRTM 240
           L   M
Sbjct: 552 LFDEM 556



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ A  K+G+ ++   V  +M  S  K D +   SML       +  +  ++L  M +  
Sbjct: 361 LIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKG 420

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+  YN++ +  G+   +  M  L+ ++ A  + PDV T+   ++++ R  L  +  
Sbjct: 421 ITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKAS 480

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           E+FEEM D  C PD  T   +I+       +++   L + M +
Sbjct: 481 ELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQE 523



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 77/158 (48%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ A+ ++  V K   V  +M + G K D F  N +LN   + G  ++  +V   M++  
Sbjct: 189 LVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNY 248

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TY ILI + G+ G   K   L + + ++    +++ + + + A  + K+    +
Sbjct: 249 CDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAI 308

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            +  +MI++ C P+  T  +++   S+  Q+ ++  ++
Sbjct: 309 FMLSKMIESDCRPNQFTYSIMLDVLSTGGQLHRLNEIL 346



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 85/197 (43%), Gaps = 8/197 (4%)

Query: 46  LFVFIFSIYFSDAHA--VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103
           + V +FS     A A  +  EM+R G+   + +  LL+    + G   +C   ++   K 
Sbjct: 124 ILVLLFSNRADPAEAMRLIAEMERDGVPGNISTVNLLVGMGVEVG---RC---LDLASKW 177

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           GL+ + +    ++  + R  +  K  EV   M +  Y  DI  YN+L+N   + G +++ 
Sbjct: 178 GLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQA 237

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             +F+ +      PD  T+T  +    +     + + + EEM+  GC  +      +I A
Sbjct: 238 YQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEA 297

Query: 224 CSSEDQIEQVTTLVRTM 240
                 +++   ++  M
Sbjct: 298 LGKNKMVDEAIFMLSKM 314



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 2/150 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+E+M+R G    + ++ +LL A +K G V +   V   M ++   PD +    ++ + G
Sbjct: 205 VYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSG 264

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+  K   +L  M       ++  YN +I   G+   +++   +   +     +P+  
Sbjct: 265 KAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQF 324

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
           T++  L   S      R  EI +  I +GC
Sbjct: 325 TYSIMLDVLSTGGQLHRLNEILD--ICSGC 352



 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 79/184 (42%), Gaps = 3/184 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++ EEM   G    + ++  ++ A  K   V +   ++++M +S  +P+ F  + ML++ 
Sbjct: 274 SLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVL 333

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              GQ  ++ E+L   +  S   +   Y+ LI    + G   +   +F  +     K D 
Sbjct: 334 STGGQLHRLNEIL---DICSGCLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDR 390

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
             + S L A    +     +++   M + G   D G   ++ SA     Q+  +++L  T
Sbjct: 391 YAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDT 450

Query: 240 MHKD 243
           M  +
Sbjct: 451 MRAN 454


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 2/175 (1%)

Query: 42  HTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +T N+ V  +  ++ F +   V  EM++  + P + +H +++ A  + G+V     +I+ 
Sbjct: 160 YTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDS 219

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G+KP     NS+L    R G+++K  EV  AM+    A D+ ++N+LI  + R G 
Sbjct: 220 MVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGE 279

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           +E+    ++ +  +R+ PDVV+++  +  ++R+       E   EM + G  PDG
Sbjct: 280 LEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDG 334



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 7/205 (3%)

Query: 43  TPNLFVF-----IFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP++  F     +F+      HA     EM+  G+ P    + +++  + + G + +   
Sbjct: 296 TPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALR 355

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V ++M   G  PD    N++LN   +  +    EE+L  M++     D+ T+  LI+ Y 
Sbjct: 356 VRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYC 415

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R G IEK    F ++  +RL+PD+VT+ + +    R+    +  E++++M     +P+  
Sbjct: 416 RDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHV 475

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T  +LI +   + Q++     +  M
Sbjct: 476 TYSILIDSHCEKGQVDNAFAFLDEM 500



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 84/158 (53%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A A  +EM   GI P + ++  ++  Y ++GNV+K +  + +M    + PD    N++
Sbjct: 491 DNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTL 550

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y + G+  +   +L  ME  +   D  TYN++I+ +   G +++ + +++ + A+ +
Sbjct: 551 IHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGI 610

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +PD  T+ S +  +      ++  ++ +EM+  G  PD
Sbjct: 611 EPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 84/200 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA  +  EMK  G+ P + +   L+  Y + GN+ K     + +    L+PD    N+
Sbjct: 385 LSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNT 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R G   K  E+   M       +  TY+ILI+ +   G ++        +  K 
Sbjct: 445 LIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKG 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+++T+ S +  Y R     +  +   +M      PD  T   LI     E ++ +  
Sbjct: 505 IVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAF 564

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            L++ M  +      + +N+
Sbjct: 565 NLLKIMENENVQPDAVTYNM 584



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 82/187 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V +EM   G  P + ++  LL    K   ++  E ++N+M + G+ PD     +++
Sbjct: 352 EALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLI 411

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G  EK  +    +       DI TYN LI+   R G + K   L+  + ++ + 
Sbjct: 412 HGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIF 471

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT++  + ++  K          +EM++ G  P+  T   +I        + +    
Sbjct: 472 PNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQF 531

Query: 237 VRTMHKD 243
           +  M  D
Sbjct: 532 LPKMRHD 538



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +T+ +N M++ Y +  QF +++ V++ MEK     D+ T+N++++   R G +E    L 
Sbjct: 158 NTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALI 217

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
            S+ +K +KP +VT+ S L    R   + +  E+F  M   G  PD  +  +LI      
Sbjct: 218 DSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRA 277

Query: 228 DQIEQVTTLVRTMH 241
            ++E+     + M 
Sbjct: 278 GELEEALRFYKEMR 291



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 78/186 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  VF  M   G+ P ++S  +L+  + + G + +      +M    + PD    + 
Sbjct: 245 WDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSC 304

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ L+ R G+ +   E L  M +     D   Y ++I  + R G + +   +   + A  
Sbjct: 305 LIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFG 364

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDVVT+ + L    +++      E+  EM + G  PD  T   LI     +  IE+  
Sbjct: 365 CLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKAL 424

Query: 235 TLVRTM 240
               T+
Sbjct: 425 QFFDTI 430



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   ++EM+   +TP + S   L+  +++ G +      + +M + GL PD  +   
Sbjct: 280 LEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTM 339

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R G   +   V   M       D+ TYN L+N   +   +   E L   +  + 
Sbjct: 340 VIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD+ T+T+ +  Y R     + L+ F+ + D    PD  T   LI     +  + +  
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKAN 459

Query: 235 TLVRTMH 241
            L   MH
Sbjct: 460 ELWDDMH 466



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 76/156 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ ++++M    I P   ++ +L+ ++ + G V      +++M   G+ P+    NS++ 
Sbjct: 458 ANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIK 517

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K ++ L  M       D+ TYN LI+ Y + G + +   L + +  + ++P
Sbjct: 518 GYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQP 577

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D VT+   ++ +S     +    ++++M   G  PD
Sbjct: 578 DAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPD 613


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 86/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A + F  M   GI    K++ +L+    K G V   E + ++M   G+ PD F   +++
Sbjct: 578 EACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLI 637

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + +LG  +K   +   M +    +++  YN+L+  + R G IEK + L   +  K   
Sbjct: 638 DGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFP 697

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT+ + +  Y +        ++F+EM   G  PD      L+  C   + +E+  T+
Sbjct: 698 PNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 757

Query: 237 VRTMHK 242
             T  K
Sbjct: 758 FETNEK 763



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 1/185 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  +F EM+  GI P + S+  L+  +SK GN+ K   + ++M ++GL  +  + N +
Sbjct: 612 NDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNML 671

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  + R G+ EK +E+L  M    +  +  TY  +I+ Y + G + +   LF  +  K L
Sbjct: 672 LGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGL 731

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD   +T+ +    R     R + IFE   + GC         LI+      + E  T 
Sbjct: 732 VPDSFVYTTLVDGCCRLNDVERAITIFETN-EKGCASSSAPFNALINWVFKFGKTELTTD 790

Query: 236 LVRTM 240
           ++  +
Sbjct: 791 MINRL 795



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 38/221 (17%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   G  P   ++  ++  Y K+G++A+   + ++M   GL PD+FV  ++++
Sbjct: 684 AKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVD 743

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADIS-------------------------------- 145
              RL   E+   +    EKG  ++                                   
Sbjct: 744 GCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKF 803

Query: 146 ------TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                 TYNI+I+   + G +E  + LF  +    L P V+T+TS L  Y +        
Sbjct: 804 GKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMF 863

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +F+E+I AG  PD     V+I+A   E    +   L+  M
Sbjct: 864 SVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQM 904



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 83/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A +   EM   G  P   ++   ++ Y + G  A  +  + +M + G+ P+  +   +
Sbjct: 507 DEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGL 566

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y + G+  +      +M +     D  TY +L+N   + G +   E +F  +  K +
Sbjct: 567 INEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGI 626

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV ++ + +  +S+    ++   IF+EM+ AG   +     +L+       +IE+   
Sbjct: 627 APDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKE 686

Query: 236 LVRTM 240
           L+  M
Sbjct: 687 LLDEM 691



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 5/140 (3%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KP+    N M++   + G  E  +E+   M+K +    + TY  L+N Y + G   +M  
Sbjct: 805 KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFS 864

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-----IDAGCYPDGGTAKVL 220
           +F  + A  ++PD + ++  + A+ ++ +  + L + ++M     +D GC     T + L
Sbjct: 865 VFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRAL 924

Query: 221 ISACSSEDQIEQVTTLVRTM 240
           +S  +   ++E    +V  M
Sbjct: 925 LSGFAKVGEMEVAEKVVENM 944



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 71/184 (38%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM   G  P +  +  L+  + +         V+ +M + G+ PDTF  NS++ 
Sbjct: 439 AYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLII 498

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + ++    L  M +  +  D  TY   I+ Y   G     +   + +    + P
Sbjct: 499 GLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIP 558

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V  T  +  Y +K         F  M++ G   D  T  VL++      ++     + 
Sbjct: 559 NKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIF 618

Query: 238 RTMH 241
             M 
Sbjct: 619 HEMR 622



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P   ++ +++    K GN+   + + + M K+ L P      S+LN Y ++G+  +M  V
Sbjct: 806 PNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSV 865

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-----VVTWTSRL 186
              +       D   Y+++IN + + G   K   L   + AK    D     + T  + L
Sbjct: 866 FDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALL 925

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-ACSSEDQ 229
           + +++        ++ E M+     PD  T   LI+ +C S +Q
Sbjct: 926 SGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQ 969



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/218 (17%), Positives = 83/218 (38%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK------------------------- 92
           A A+F+ M   G+TP  +++  L+  + +  NV K                         
Sbjct: 369 AKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVK 428

Query: 93  --CEG--------VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
             C          ++ +M  SG +P+  +  +++  + +  +F     VL  M +   A 
Sbjct: 429 GMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAP 488

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D   YN LI    +   +++       +     KPD  T+ + ++ Y     +    +  
Sbjct: 489 DTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYV 548

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +EM++ G  P+      LI+    + ++ +  +  R+M
Sbjct: 549 KEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSM 586



 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 79/185 (42%), Gaps = 4/185 (2%)

Query: 58  AHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           A+ +  EM   G  I P M  + + +   SK G + K + + + M   G+ P      S+
Sbjct: 334 ANGLVHEMVSHGFSIDPMMYDYFICVM--SKEGAMEKAKALFDGMITFGVTPGARAYASL 391

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  + R     K  E+L  ++K +      TY   +      G ++    + + + A   
Sbjct: 392 IEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGC 451

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+VV +T+ +  + +K  +   + + +EM + G  PD      LI   S   ++++  +
Sbjct: 452 RPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARS 511

Query: 236 LVRTM 240
            +  M
Sbjct: 512 FLLEM 516


>gi|255574996|ref|XP_002528404.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532192|gb|EEF33997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 955

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 8/194 (4%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN   F  +  +Y     F+ A  +F   ++ G+   + S+  ++ AY    +      
Sbjct: 747 SPNTITFNVMLDVYGKAKLFNKAKELFWMARKRGLVDVI-SYNTVIAAYGHNKDFKNMAS 805

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            +  M   G        N ML+ YG+ GQ E    VL  M++ SY +D  TYNI+INIYG
Sbjct: 806 AVRNMQFDGFSVSLEAYNCMLDGYGKEGQMECFRNVLQRMKQSSYTSDHYTYNIMINIYG 865

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             G+I+++ G+   L    L+PD+ ++ + + AY    +    +++ +EM + G  PD  
Sbjct: 866 EQGWIDEVAGVLTELRECGLRPDLCSYNTLIKAYGVAGMVEDAIDLVKEMRENGIEPDKI 925

Query: 216 TAKVLISACSSEDQ 229
           T   LI+A    D+
Sbjct: 926 TYSNLITALQKNDK 939



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 70/141 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  +    M+  G + +++++  +L  Y K G +     V+ +M +S    D +  N 
Sbjct: 800 FKNMASAVRNMQFDGFSVSLEAYNCMLDGYGKEGQMECFRNVLQRMKQSSYTSDHYTYNI 859

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+N+YG  G  +++  VLT + +     D+ +YN LI  YG  G +E    L + +    
Sbjct: 860 MINIYGEQGWIDEVAGVLTELRECGLRPDLCSYNTLIKAYGVAGMVEDAIDLVKEMRENG 919

Query: 175 LKPDVVTWTSRLAAYSRKKLY 195
           ++PD +T+++ + A  +   Y
Sbjct: 920 IEPDKITYSNLITALQKNDKY 940



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 1/162 (0%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  M  LG+ P + +  +L+  Y K  NV + E V ++M   G+   +   ++M+ +Y R
Sbjct: 284 FRMMLELGVQPNIATFGMLMGLYQKGWNVEEAEFVFSKMRSFGIICQS-AYSAMITIYTR 342

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           L  + K EE++  M +   A ++  + +L+N Y + G +E+ E +   +      P++V 
Sbjct: 343 LSLYNKAEEIIGLMGEDKVAMNVENWLVLLNAYSQQGRLEEAEQVLVEMQEASFSPNIVA 402

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + + +  Y +         +F ++ +AG  PD  T + +I  
Sbjct: 403 FNTLITGYGKLSNMAAAQRLFLDIQNAGLEPDETTYRSMIEG 444



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 13/231 (5%)

Query: 41  QHTPNLFV--FIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           +  PNL +   +  IY     F++A  +++++K  GI   M +  +++  Y K G++   
Sbjct: 604 EDKPNLHISCTVIDIYSVLGCFAEAEKLYQQLKCSGIALDMVAFSIVVRMYVKAGSLKDA 663

Query: 94  EGVINQMHK-SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
             V+  M K   + PD ++   ML +Y + G   K++++   + K     D   YN +IN
Sbjct: 664 CSVLATMEKQENIIPDIYLYRDMLRIYQQCGMMSKLKDLYHKILKSEVDWDQELYNCIIN 723

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              R   + ++  LF  +  +   P+ +T+   L  Y + KL+ +  E+F      G   
Sbjct: 724 CCARALPVGELSRLFSEMLQRGFSPNTITFNVMLDVYGKAKLFNKAKELFWMARKRGLV- 782

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKD-MKTALPIY---FNLYGEKG 259
           D  +   +I+A       + + + VR M  D    +L  Y    + YG++G
Sbjct: 783 DVISYNTVIAAYGHNKDFKNMASAVRNMQFDGFSVSLEAYNCMLDGYGKEG 833



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 5/188 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM--HKSGLKPDTFVINS 114
           +A  VF +M+  GI     ++  ++T Y++     K E +I  M   K  +  + +++  
Sbjct: 314 EAEFVFSKMRSFGII-CQSAYSAMITIYTRLSLYNKAEEIIGLMGEDKVAMNVENWLV-- 370

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN Y + G+ E+ E+VL  M++ S++ +I  +N LI  YG+   +   + LF  +    
Sbjct: 371 LLNAYSQQGRLEEAEQVLVEMQEASFSPNIVAFNTLITGYGKLSNMAAAQRLFLDIQNAG 430

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+PD  T+ S +  + R   Y+     ++E+   G  P+      LI+  +  D  E   
Sbjct: 431 LEPDETTYRSMIEGWGRTGNYKEAEWYYKELKRLGYMPNSSNLYTLINLQAKHDDDEGAI 490

Query: 235 TLVRTMHK 242
             +  M K
Sbjct: 491 GTLDDMLK 498



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/184 (18%), Positives = 80/184 (43%), Gaps = 1/184 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           ++ A  +   M    +   +++ ++LL AYS+ G + + E V+ +M ++   P+    N+
Sbjct: 346 YNKAEEIIGLMGEDKVAMNVENWLVLLNAYSQQGRLEEAEQVLVEMQEASFSPNIVAFNT 405

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  YG+L      + +   ++      D +TY  +I  +GR G  ++ E  ++ L    
Sbjct: 406 LITGYGKLSNMAAAQRLFLDIQNAGLEPDETTYRSMIEGWGRTGNYKEAEWYYKELKRLG 465

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+     + +   ++       +   ++M+  GC         L+ A     +I +V 
Sbjct: 466 YMPNSSNLYTLINLQAKHDDDEGAIGTLDDMLKIGC-QHSSILGTLLKAYEKAGRINKVP 524

Query: 235 TLVR 238
            L++
Sbjct: 525 LLLK 528



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/177 (18%), Positives = 85/177 (48%), Gaps = 1/177 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           LL+ +  + GN+     +  QM KS  KP+  +  +++++Y  LG F + E++   ++  
Sbjct: 579 LLICSCKELGNLESAVRIYTQMPKSEDKPNLHISCTVIDIYSVLGCFAEAEKLYQQLKCS 638

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRR 197
             A D+  ++I++ +Y + G ++    +  ++  +  + PD+  +   L  Y +  +  +
Sbjct: 639 GIALDMVAFSIVVRMYVKAGSLKDACSVLATMEKQENIIPDIYLYRDMLRIYQQCGMMSK 698

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
             +++ +++ +    D      +I+ C+    + +++ L   M +   +   I FN+
Sbjct: 699 LKDLYHKILKSEVDWDQELYNCIINCCARALPVGELSRLFSEMLQRGFSPNTITFNV 755


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 97/182 (53%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G  P + S+ +LL A++++G++ +  GV  QM  +G  P+    + +LNLYG
Sbjct: 67  LLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYG 126

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+++ + ++   M+  +   + +TYNILIN++G GG+ +++  LF  +  + ++P++ 
Sbjct: 127 RHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNME 186

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A  +  L+    +I   M + G  P       +I A       E+      TM
Sbjct: 187 TYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTM 246

Query: 241 HK 242
           ++
Sbjct: 247 NE 248



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 89/176 (50%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  GI   + ++  LL+A ++ G   + E V   M++ G+ PD    + ++  +G+L +
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            EK+ E+L  ME G    DI++YN+L+  + + G I++  G+F+ +      P+  T++ 
Sbjct: 61  LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSI 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            L  Y R   Y    ++F EM  +   P+  T  +LI+        ++V TL   M
Sbjct: 121 LLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDM 176



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 2/194 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  VF  M   GI P + ++  L+  + K   + K   ++ +M   G  PD    N +
Sbjct: 27  DEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVL 86

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  + + G  ++   V   M+      + +TY+IL+N+YGR G  + +  LF  +     
Sbjct: 87  LEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNT 146

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+  T+   +  +     ++  + +F +M++    P+  T + LI AC      E    
Sbjct: 147 EPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKK 206

Query: 236 LVRTMHKDMKTALP 249
           ++  +H + K  +P
Sbjct: 207 IL--LHMNEKGVVP 218



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 74/165 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF +M+  G  P   ++ +LL  Y + G       +  +M  S  +P+    N ++
Sbjct: 98  EAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILI 157

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N++G  G F+++  +   M + +   ++ TY  LI   G+GG  E  + +   +  K + 
Sbjct: 158 NVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVV 217

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           P    +T  + AY +  LY   L  F  M + G  P   T   LI
Sbjct: 218 PSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLI 262



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 75/151 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A   F  M  +G  PT++++  L+  ++K G   + E ++ +M +SG+  +    N 
Sbjct: 236 YEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNG 295

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + GQFE+  +    MEK     D  T   ++++Y   G +E+ E  F  + A  
Sbjct: 296 VIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALG 355

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           + P V+ +   LA Y++   +    ++ +EM
Sbjct: 356 ILPSVMCYCMMLAVYAKADRWDDAHQLLDEM 386



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 91/203 (44%), Gaps = 9/203 (4%)

Query: 43  TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N+ + +F    YF +   +F +M    + P M+++  L+ A  K G     + ++  M
Sbjct: 152 TYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHM 211

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
           ++ G+ P +     ++  YG+   +E+       M +      + TYN LI ++ +GG  
Sbjct: 212 NEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLY 271

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++ E +   +    +  +  T+   + A+ +   +   ++ + EM  A C PD  T + +
Sbjct: 272 KESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAV 331

Query: 221 ISA-C------SSEDQIEQVTTL 236
           +S  C       SE+Q  ++  L
Sbjct: 332 LSVYCFAGLVEESEEQFGEIKAL 354



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 81/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +   M   G+ P+ K++  ++ AY +     +     N M++ G KP     NS++
Sbjct: 203 DAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLI 262

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++ + G +++ E +L  M +   A +  T+N +I  + +GG  E+    +  +   R  
Sbjct: 263 QMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCD 322

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T  + L+ Y    L     E F E+   G  P      ++++  +  D+ +    L
Sbjct: 323 PDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQL 382

Query: 237 VRTM 240
           +  M
Sbjct: 383 LDEM 386


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 95/188 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V +EM   G+ P   ++ LL+ AY++ G       ++ +M   G+KP ++V + 
Sbjct: 320 LKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 379

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G ++K   VL  M       D   YN++I+ +G+   +     +F  +  + 
Sbjct: 380 ILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEG 439

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDVVTW + + A+ +   +   +E+F+EM ++ C P   T  ++I+    +++   V 
Sbjct: 440 IEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVE 499

Query: 235 TLVRTMHK 242
           T++  M +
Sbjct: 500 TMMSEMKE 507



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EMK  G+ P + ++  L+  Y ++G   +    I  M   GLKP   + ++++N Y 
Sbjct: 501 MMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYA 560

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  +    V+ AM      A     N LIN +G    + +   + Q +     +PDV+
Sbjct: 561 QRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVI 620

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+T+ + A  R + + +   I+EEMI +GC PD     +L SA
Sbjct: 621 TYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSA 663



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 89/199 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AV  EM   G+ P    + +++  + K   +     V N+M   G++PD    N+
Sbjct: 390 WQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNT 449

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ +   E+   M + +     +TYNI+IN+ G       +E +   +  + 
Sbjct: 450 LIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQG 509

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+++T+T+ +  Y R   Y+  ++  E M   G  P       L++A +     +   
Sbjct: 510 LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 569

Query: 235 TLVRTMHKDMKTALPIYFN 253
            +V+ M  D   A  +  N
Sbjct: 570 NVVKAMRADGLEASTVVLN 588



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 1/156 (0%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFE 126
           +G+TP   +   L++A    G V + E +  +   +G +KP T   N++L  Y ++G  +
Sbjct: 262 IGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLK 321

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             E VL  M +   A D +TY++L++ Y R G  E    L + + A  +KP    ++  L
Sbjct: 322 NAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 381

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           A +  +  +++   +  EM  +G  PD     V+I 
Sbjct: 382 AGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMID 417



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 2/205 (0%)

Query: 41  QHTPNLFVFIFSIYFSDAHA--VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  Y    HA  VF  M+  GI P + +   L+ A+ K G       +  
Sbjct: 409 RHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFK 468

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +S   P T   N M+NL G   ++  +E +++ M++     +I TY  L+++YGR G
Sbjct: 469 EMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSG 528

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             ++     +++ A  LKP    + + + AY+++ L    L + + M   G         
Sbjct: 529 RYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN 588

Query: 219 VLISACSSEDQIEQVTTLVRTMHKD 243
            LI+A   + ++ +  ++++ M ++
Sbjct: 589 SLINAFGEDRRVVEAFSVLQFMKEN 613


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 1/180 (0%)

Query: 55  FSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           F DA  +F+EM+++ G  P + +   LL  Y+  G + K +   + M   G+ P     N
Sbjct: 245 FEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFN 304

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L  Y   G + +  +V+  + K  +  D+ +Y+ L+N +G+ G+ EK + +F  +  +
Sbjct: 305 TLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQR 364

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KP++VT+   + AY+    Y R  E+  +M +A   P+  T   L +AC+     E+V
Sbjct: 365 SRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKV 424



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 80/159 (50%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V+      + A   F+ M   G+ PT+ +   LL AY+  G   +   V+  + K+  
Sbjct: 272 LHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKF 331

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    +S+LN +G+ G  EK +EV   M++ S   ++ T+N L++ Y   G  E+   
Sbjct: 332 EPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARE 391

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
           L   +   R++P+VVT  S  AA +R +   +  ++F E
Sbjct: 392 LLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHE 430



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 1/166 (0%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA 134
           SH ++L   +K G       +  +M K +G +PD    N++L++Y   GQ  K +E    
Sbjct: 231 SHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDM 290

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           M     A  I T+N L+  Y   G   +   +   L   + +PDVV+++S L A+ +   
Sbjct: 291 MIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGY 350

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             +  E+F+ M      P+  T   L+ A +S  + E+   L+  M
Sbjct: 351 PEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDM 396



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 88/197 (44%), Gaps = 1/197 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + M   G+ P + ++ ++L+A+   G         + +    +  D +  N +LN
Sbjct: 178 ALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILN 237

Query: 118 LYGRLGQFEKMEEVLTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
              +LG+FE    +   M K      D+ T+N L+++Y   G I K +  F  +  + + 
Sbjct: 238 CLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMA 297

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +VT+ + L AY+ + +Y   L++   ++ A   PD  +   L++A       E+   +
Sbjct: 298 PTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEV 357

Query: 237 VRTMHKDMKTALPIYFN 253
              M +  +    + FN
Sbjct: 358 FDLMKQRSRKPNLVTFN 374



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 80/186 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +++A  V   + +    P + S+  LL A+ K G   K + V + M +   KP+    N 
Sbjct: 316 YTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNG 375

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y   G++E+  E+L  M +     ++ T   L     R    EK+  +F     ++
Sbjct: 376 LMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQ 435

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +  +V  + + + AY     +     + E M +    P+G T  +LI+A  S     +  
Sbjct: 436 IALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREAR 495

Query: 235 TLVRTM 240
           TL   M
Sbjct: 496 TLYDKM 501



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 7/215 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  VF+ MK+    P + +   L+ AY+  G   +   +++ M ++ ++P+   I 
Sbjct: 350 YPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTIC 409

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+     R    EK+ +V    +    A ++  +N  I  Y   G  ++ + L + +  +
Sbjct: 410 SLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQ 469

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L+P+ VT+   + A      YR    ++++M+D G          LI+A +      + 
Sbjct: 470 NLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEA 529

Query: 234 TTLVRTMHKD-------MKTALPIYFNLYGEKGVA 261
            T+   M K          T+L I + +Y +  +A
Sbjct: 530 RTIFDDMRKAGCKANVVTYTSLMIAYRMYDDAQLA 564



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 121 RLGQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           R G  E    V   M+ +  Y A    YN +I ++ R    ++  GLF  +   R KPDV
Sbjct: 63  RTGALEHSLRVFNWMKNQKCYRARTDIYNCMIWLHARHQRADQARGLFYEMKVWRCKPDV 122

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDA--GCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            T+ + +  + R   +R  L+IF++M+ A     P   +   LI+AC S  Q  +   + 
Sbjct: 123 ETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWFKALEIC 182

Query: 238 RTM 240
           + M
Sbjct: 183 KRM 185



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 41/234 (17%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG--------------------NVAKCE 94
           + DA    EEM   GITP   +   L  A +K                      +VA  E
Sbjct: 558 YDDAQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDDVAYTE 617

Query: 95  GVI---------------NQMHKSGLK-PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
            ++                 M K  L+  +T VIN +L+  GR G+ +++ +V   +++ 
Sbjct: 618 TLLACSRLKDWETALFLYEGMKKRRLRLTNTMVIN-LLSAVGRSGKLDRLHKVFLELQQQ 676

Query: 139 -SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
             +   +  YNILI+ Y RG    K   +   +    L+P+  T+   L+  S+ +L+  
Sbjct: 677 IGFVPTLQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWET 736

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSS---EDQIEQVTTLVRTMHKDMKTAL 248
            LEI+ E++  G  PD    K+ ++A +S   E++       ++ + ++ K A+
Sbjct: 737 YLEIYGEVLAQGMEPDYNILKISVTAYTSLGMEEEASLTEARLQGLRRETKGAV 790



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 3/167 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG--LKPDTFVINSM 115
           A  +F EMK     P ++++  L+  + + G       + + M ++   + P     N++
Sbjct: 106 ARGLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNL 165

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  G  GQ+ K  E+   M       D+ TYNI+++ +  GG        +  L +K++
Sbjct: 166 INACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKV 225

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLI 221
             D  +    L   ++   +   + +F+EM    GC PD  T   L+
Sbjct: 226 PLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALL 272



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 80  LLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           L++  ++TG +     V N M ++   +  T + N M+ L+ R  + ++   +   M+  
Sbjct: 57  LISEITRTGALEHSLRVFNWMKNQKCYRARTDIYNCMIWLHARHQRADQARGLFYEMKVW 116

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSL--PAKRLKPDVVTWTSRLAAYSRKKLYR 196
               D+ TYN L+N++GR G       +F  +    K + P   ++ + + A      + 
Sbjct: 117 RCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWF 176

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           + LEI + M D G  PD  T  +++SA  S  Q
Sbjct: 177 KALEICKRMTDNGVGPDLMTYNIILSAFKSGGQ 209



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 4/167 (2%)

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           M+ L A  +  + A+  G+  +M     KPD    N+++N++GR GQ+    ++   M +
Sbjct: 93  MIWLHARHQRADQAR--GLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQ 150

Query: 138 GS--YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
                A   S+YN LIN  G  G   K   + + +    + PD++T+   L+A+      
Sbjct: 151 APKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQP 210

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           R  +  ++ +I      D  +  ++++  +   + E    L + M K
Sbjct: 211 RHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRK 257


>gi|115529197|dbj|BAF34331.1| pentatricopeptide repeat protein [Physcomitrella patens]
          Length = 728

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 1/177 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH   +  ++ G    + S   L+ AY+K  +    E  + +M  +G        NS+L+
Sbjct: 540 AHKALKLAQQFGSADKI-SFSTLVHAYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILD 598

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG+ GQ EK+ +VL  ME      D+++YNILIN YG+   I +ME LF+++  + + P
Sbjct: 599 AYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQEEGVVP 658

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           D  T+ + +  Y       R +  F+ M DAG  PD  T  +L+S       I++  
Sbjct: 659 DRWTYNTIIRTYGFADYPDRAVYWFKAMQDAGISPDRVTYMILVSTFERAGNIDEAA 715



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 4/151 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  A   EM+  G   +++++  +L AY K G + K   V+ +M  SG++ D    N 
Sbjct: 571 FPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNI 630

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+     +ME +   M++     D  TYN +I  YG   + ++    F+++    
Sbjct: 631 LINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWFKAMQDAG 690

Query: 175 LKPDVVTWTSRLAAYSR----KKLYRRCLEI 201
           + PD VT+   ++ + R     +  R CL +
Sbjct: 691 ISPDRVTYMILVSTFERAGNIDEAARWCLRM 721



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A +VF+EM+  G+TP+++S   ++  Y   G+V + EG+ + +  S  + D F  N 
Sbjct: 362 FDGAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNV 421

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+N+Y R    E   +V   ME+     D  TY+ ++ +  +     + E ++  L    
Sbjct: 422 MINVYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLRMCQKCNLPAQAEEIYWRLRNSD 481

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           ++ D V     L   ++        ++F+EMID G  P   T  V+I 
Sbjct: 482 VELDEVMCNCVLNTCAKFLPLEEMHKLFQEMIDVGYVPYNITFNVMID 529



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 4/205 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A + F EMKRL I P   +   L++ Y K  +V     VI +M K G KPD   +++
Sbjct: 222 LKEALSWFAEMKRLEIKPASSNFNTLISPYGKAKDVEGIVRVITEMKKYGCKPDWQTLDA 281

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +  Y R G  + + E+L  +    +  +  +Y  L+++Y +    ++   +F ++    
Sbjct: 282 AVRAYDRAGLIKDVTEILNLLRDAGWVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAG 341

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P      S +  +   +++     +F+EM  AG  P   ++  +I        +++  
Sbjct: 342 MAPKEYMCRSLICTFRDAEMFDGAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAE 401

Query: 235 TLVRTMHKDMKT----ALPIYFNLY 255
            L  ++   +K     A  +  N+Y
Sbjct: 402 GLFHSLRSSVKRLDIFAYNVMINVY 426



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 78/187 (41%), Gaps = 1/187 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             + H +F+EM  +G  P   +  +++  Y K G   +    +    + G   D    ++
Sbjct: 502 LEEMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERAHKALKLAQQFG-SADKISFST 560

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y +   F  ME  L  M+   Y + +  YN +++ YG+ G +EK+  +   +    
Sbjct: 561 LVHAYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSG 620

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ D+ ++   +  Y +  +      +F  M + G  PD  T   +I      D  ++  
Sbjct: 621 MRMDLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAV 680

Query: 235 TLVRTMH 241
              + M 
Sbjct: 681 YWFKAMQ 687



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 76/167 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + + ++  G++  +  +  ++TAY K     K   ++ +M +  L PD+   + 
Sbjct: 152 IEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVPDSITYSC 211

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+   GR+G+ ++       M++       S +N LI+ YG+   +E +  +   +    
Sbjct: 212 MIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISPYGKAKDVEGIVRVITEMKKYG 271

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            KPD  T  + + AY R  L +   EI   + DAG   + G+   L+
Sbjct: 272 CKPDWQTLDAAVRAYDRAGLIKDVTEILNLLRDAGWVEETGSYGTLL 318



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 69/154 (44%)

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
           Y + G + + E +++ + +SG+       NSM+  YG+   ++K   ++  M +     D
Sbjct: 146 YGQQGKIEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVPD 205

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
             TY+ +I   GR G +++    F  +    +KP    + + ++ Y + K     + +  
Sbjct: 206 SITYSCMIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISPYGKAKDVEGIVRVIT 265

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           EM   GC PD  T    + A      I+ VT ++
Sbjct: 266 EMKKYGCKPDWQTLDAAVRAYDRAGLIKDVTEIL 299



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 60/132 (45%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           +I+++ + YG+ G+ E+ E ++  +E+   +  +  YN +I  YG+    +K   L + +
Sbjct: 138 LISNVADTYGQQGKIEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKM 197

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
             + L PD +T++  + A  R    +  L  F EM      P       LIS       +
Sbjct: 198 REEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISPYGKAKDV 257

Query: 231 EQVTTLVRTMHK 242
           E +  ++  M K
Sbjct: 258 EGIVRVITEMKK 269



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 4/219 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V++      +A  +F  M++ G+ P       L+  +         + V  +M  +G+
Sbjct: 318 LHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSLICTFRDAEMFDGAKSVFKEMQVAGV 377

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P      +M+ +YG  G  ++ E +  ++       DI  YN++IN+Y R    E    
Sbjct: 378 TPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNVMINVYMRCDMPEGAIK 437

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +++ +    L PD  T+ S L    +  L  +  EI+  + ++    D      +++ C+
Sbjct: 438 VYKLMEEDHLLPDAYTYHSMLRMCQKCNLPAQAEEIYWRLRNSDVELDEVMCNCVLNTCA 497

Query: 226 SEDQIEQVTTLVRTMHKDMKTALPIYFN----LYGEKGV 260
               +E++  L + M         I FN    LYG+ G+
Sbjct: 498 KFLPLEEMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGM 536



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 4/193 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  + E+M+   + P   ++  ++ A  + G + +      +M +  +KP +   N+
Sbjct: 187 YDKAARLVEKMREEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNT 246

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ YG+    E +  V+T M+K     D  T +  +  Y R G I+ +  +   L    
Sbjct: 247 LISPYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLIKDVTEILNLLRDAG 306

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              +  ++ + L  Y +  L +  L IF  M  AG  P     + LI  C+  D   ++ 
Sbjct: 307 WVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSLI--CTFRDA--EMF 362

Query: 235 TLVRTMHKDMKTA 247
              +++ K+M+ A
Sbjct: 363 DGAKSVFKEMQVA 375



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/168 (19%), Positives = 70/168 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +   ++  G      S+  LL  Y K     +   +   M K+G+ P  ++  S++
Sbjct: 294 DVTEILNLLRDAGWVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSLI 353

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +     F+  + V   M+       + +   +I +YG  G +++ EGLF SL +   +
Sbjct: 354 CTFRDAEMFDGAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKR 413

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            D+  +   +  Y R  +    +++++ M +    PD  T   ++  C
Sbjct: 414 LDIFAYNVMINVYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLRMC 461


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  A+F+ M   G+ P + ++  LL AY+  G   +   + N + K+GL+PD     S+L
Sbjct: 206 NCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLL 265

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YGR  Q EK  EV   M+K S   +  +YN LI+ YG  G +++  GL   +    ++
Sbjct: 266 NAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQ 325

Query: 177 PDVVTWTSRLAAYSRKKL-----------------------------------YRRCLEI 201
           PDVV+ ++ LAA  R +                                    Y + LE+
Sbjct: 326 PDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALEL 385

Query: 202 FEEMIDAGCYPDGGTAKVLISACS 225
           +  M ++   PD  T  +LIS  S
Sbjct: 386 YTSMRESNVKPDAVTYNILISGSS 409



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 5/195 (2%)

Query: 57  DAHAVFEEMK--RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +A  +F  M+  R    P + ++  ++ +Y   G V  C+ + + M   G+KP+    NS
Sbjct: 169 EAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNS 228

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y   G   +   +   ++K     DI +Y  L+N YGR    EK   +F  +    
Sbjct: 229 LLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS 288

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+ V++ + + AY    + +  + +  EM   G  PD  +   L++AC    QI ++ 
Sbjct: 289 CKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIE 348

Query: 235 TLV---RTMHKDMKT 246
           T++   R+   D+ T
Sbjct: 349 TILEAARSRGIDLNT 363



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 86/185 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF +MK+    P   S+  L+ AY   G + +  G++++M K G++PD   I+++L 
Sbjct: 277 AREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLA 336

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR  Q  ++E +L A        +   YN  I  Y   G  EK   L+ S+    +KP
Sbjct: 337 ACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKP 396

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+   ++  S+   Y   L  FE+M+D+           LI +   + ++ +  +  
Sbjct: 397 DAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTF 456

Query: 238 RTMHK 242
            +M K
Sbjct: 457 SSMKK 461



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L        +S A + FE MK   +T    +  +++    K G   +   + N
Sbjct: 116 LVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFN 175

Query: 99  QMHKSGLK--PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M +   K  PD     S+++ Y   GQ E  + +   M       +I  YN L+  Y  
Sbjct: 176 SMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYAS 235

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +   +F  +    L+PD+V++TS L AY R     +  E+F +M    C P+  +
Sbjct: 236 RGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVS 295

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   +++   L+  M KD
Sbjct: 296 YNALIDAYGSAGMLKEAVGLLHEMEKD 322



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 35/223 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  EM++ GI P + S   LL A  +   + + E ++      G+  +T   NS
Sbjct: 309 LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNS 368

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN---------------------- 152
            +  Y   G +EK  E+ T+M + +   D  TYNILI+                      
Sbjct: 369 GIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSK 428

Query: 153 -------------IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                         Y + G + + E  F S+      PDV+T+T+ + AY+    ++R  
Sbjct: 429 VSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAW 488

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           ++F+EM   G  PD      L+ A +   + E+V  L+  M K
Sbjct: 489 DLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKK 531



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 17/202 (8%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M R  I PT  ++  ++ A    GN  K   +  +M ++G+ PD    N +L+   
Sbjct: 68  IMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALK 127

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK--PD 178
              Q+ K       M+  +  +D  T NI+I+   + G   +   LF S+  +R K  PD
Sbjct: 128 NGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPD 187

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           VVT+TS + +Y        C  IF+ M+  G  P+      L+ A +S           R
Sbjct: 188 VVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYAS-----------R 236

Query: 239 TMHKDMKTALPIYFNLYGEKGV 260
            MH++   AL I FNL  + G+
Sbjct: 237 GMHRE---ALAI-FNLIKKNGL 254



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  Y++   V +  G+  +M +   KPD  + NS+++ + R GQ+     ++  M + 
Sbjct: 16  MMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRA 75

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     +TYN +IN  G  G  +K   L + +    + PD+VT    L+A      Y + 
Sbjct: 76  AIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKA 135

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           +  FE M  A    D  T  ++I       Q  +   L  +M ++ +T  P
Sbjct: 136 ISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSM-RERRTKCP 185



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           + +Y A    Y ++I +Y R   +++  GLF  +   R KPD   + S + A+SR   +R
Sbjct: 4   QDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWR 63

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             + I E+M+ A   P   T   +I+AC +    ++   L + M ++
Sbjct: 64  WAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTEN 110



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 83/202 (41%), Gaps = 35/202 (17%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           ++ +I     S+A + F  MK+ G  P + ++  L+ AY+  G   +   +  +M  +G+
Sbjct: 440 IYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGI 499

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY------------------------- 140
            PD  + +S++  + + G+ E++ +++  M+K S                          
Sbjct: 500 PPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASE 559

Query: 141 ----------AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
                     +  + T N ++N  G+ G  E M  LF  +        + T+   L    
Sbjct: 560 MIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSCSTVGLSTYAVVLRNLL 619

Query: 191 RKKLYRRCLEIFEEMIDAGCYP 212
               +R+ +E+ + M D+G +P
Sbjct: 620 VVGKWRKYIEVLQWMEDSGVHP 641



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/149 (19%), Positives = 71/149 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           ++++   FE+M    ++ T + +  L+ +Y K G +++ E   + M KSG  PD     +
Sbjct: 414 YTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTT 473

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y   G +++  ++   ME      D    + L+  + +GG  E++  L + +  K 
Sbjct: 474 LIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKS 533

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +  +  ++   +A+ +  + ++   E+ E
Sbjct: 534 IPLNQKSYFEIIASCTMIRDWKTASEMIE 562


>gi|242078641|ref|XP_002444089.1| hypothetical protein SORBIDRAFT_07g007540 [Sorghum bicolor]
 gi|241940439|gb|EES13584.1| hypothetical protein SORBIDRAFT_07g007540 [Sorghum bicolor]
          Length = 942

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 1/169 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F+ A  VF   ++ G+   + S+  ++ AY+K+GN       +  M  +G        N 
Sbjct: 746 FNRAEKVFIMARKQGLADII-SYNTIIAAYAKSGNFHSMNYFVQMMQDAGFPVSPEAYNC 804

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+ YG+ GQ E+   VL  M++     D  TYNI+INIYGR G+IE +  +   L  + 
Sbjct: 805 MLDAYGKAGQLEEFASVLQKMKRAKCKFDHYTYNIMINIYGRRGWIEDVSNVLAELKDRG 864

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + PD+ ++ + + AY   ++    +++ +EM   G  PD  T   LI+A
Sbjct: 865 VVPDLYSYNTLIKAYGIARMPEDAVKLMQEMRIKGISPDRVTYANLIAA 913



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 16/235 (6%)

Query: 14  AQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVF--IFSIY-----FSDAHAVFEEMK 66
           A+R   +W   +     H ML      +  PNL  F  +  +Y      S+A   F++M+
Sbjct: 252 AKRRLDAWATKWF----HMMLER----EVQPNLSTFGMLMVLYQKTGKLSEAEFTFQKMR 303

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE 126
              I   + ++  ++T Y++ G  AK E  IN M+  GL P+       LN+Y + G+ E
Sbjct: 304 NCNI-KCVNAYSAMITLYTRLGLFAKSEDTINLMNNDGLVPNMENWLVRLNVYCQQGKME 362

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
           + E VL +M    +  +I  YN LI  YG+   ++K   +F SL +  L PD  T+ S +
Sbjct: 363 EAELVLQSMVDEGFTLNIVAYNTLITGYGKSSDVQKANRVFDSLGSAGLAPDETTYRSMV 422

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             + R  +Y   +  + ++  AG  P+      +I+  +  D  E    ++  M 
Sbjct: 423 EGFGRANIYEEAILYYRKLKGAGFRPNASNFYTMINLLARRDDNETAAEIMEDMR 477



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 105/219 (47%), Gaps = 10/219 (4%)

Query: 48  VFIFSIYFSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK 106
           ++I +    DA ++  EM K+  I P     + +L  Y K G + K       + KS ++
Sbjct: 633 MYIKAQRLEDACSILAEMEKQKEIIPDKYLFLDMLRTYQKCGLLEKLADTYYWIRKSQVE 692

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
            D  + N ++N  GR    +++  +   M +  + A+  T N+L++IYG+ G   + E +
Sbjct: 693 CDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNRAEKV 752

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA-KVLISACS 225
           F  +  K+   D++++ + +AAY++   +       + M DAG +P    A   ++ A  
Sbjct: 753 F-IMARKQGLADIISYNTIIAAYAKSGNFHSMNYFVQMMQDAG-FPVSPEAYNCMLDAYG 810

Query: 226 SEDQIEQVTTLVRTMHK-----DMKTALPIYFNLYGEKG 259
              Q+E+  ++++ M +     D  T   I  N+YG +G
Sbjct: 811 KAGQLEEFASVLQKMKRAKCKFDHYT-YNIMINIYGRRG 848



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 1/181 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM + G      +  +LL  Y K G   + E V     K GL  D    N+++  Y 
Sbjct: 717 IFDEMIQQGHLANTVTLNVLLDIYGKAGLFNRAEKVFIMARKQGL-ADIISYNTIIAAYA 775

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G F  M   +  M+   +      YN +++ YG+ G +E+   + Q +   + K D  
Sbjct: 776 KSGNFHSMNYFVQMMQDAGFPVSPEAYNCMLDAYGKAGQLEEFASVLQKMKRAKCKFDHY 835

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  Y R+        +  E+ D G  PD  +   LI A       E    L++ M
Sbjct: 836 TYNIMINIYGRRGWIEDVSNVLAELKDRGVVPDLYSYNTLIKAYGIARMPEDAVKLMQEM 895

Query: 241 H 241
            
Sbjct: 896 R 896



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 1/156 (0%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LK 106
           VF     F+DA A++ E+K       M ++ +++  Y K   +     ++ +M K   + 
Sbjct: 598 VFSMMKRFADAEAIYLELKASASVLDMIAYSVIVRMYIKAQRLEDACSILAEMEKQKEII 657

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           PD ++   ML  Y + G  EK+ +    + K     D + YN +IN  GR   ++++  +
Sbjct: 658 PDKYLFLDMLRTYQKCGLLEKLADTYYWIRKSQVECDEAMYNCIINCCGRAIPVDELSRI 717

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           F  +  +    + VT    L  Y +  L+ R  ++F
Sbjct: 718 FDEMIQQGHLANTVTLNVLLDIYGKAGLFNRAEKVF 753


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 94/182 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM   G  P + S+ +LL AY++ GN+    GV   M ++G  P+    + +L LYG
Sbjct: 306 LLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYG 365

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+++++ E+   M+  +   D +TYN LI+++G GG+ +++  LF  +  + ++P++ 
Sbjct: 366 KHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNME 425

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A  +  L+    +I   M + G  P       +I A       E+    + TM
Sbjct: 426 TYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTM 485

Query: 241 HK 242
           ++
Sbjct: 486 NE 487



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 88/184 (47%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F EM+  GI P + ++  LL A S  G   + E V   M++ G+ PD      +++ +
Sbjct: 235 GLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTF 294

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+L + +K+ E+L  M       +IS+YN+L+  Y R G IE   G+F+ +      P+ 
Sbjct: 295 GKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNA 354

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T++  L  Y +   Y    E+F EM  +   PD  T   LI         ++V TL   
Sbjct: 355 ETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHD 414

Query: 240 MHKD 243
           M ++
Sbjct: 415 MAEE 418



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 2/182 (1%)

Query: 61  VFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +F+ M+R +   P    + ++++   + G + KC  +  +M   G+    F   +++N Y
Sbjct: 129 LFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSY 188

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPD 178
           GR G++E   E+L  M+K   +  I TYN +IN   RGG   E + GLF  +  + ++PD
Sbjct: 189 GRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPD 248

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           +VT+ + L A S + L      +F  M + G  PD  T   L+      +++++V+ L++
Sbjct: 249 IVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLK 308

Query: 239 TM 240
            M
Sbjct: 309 EM 310



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 79/169 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  VF  M   G+ P + ++  L+  + K   + K   ++ +M  +G  P+    N +
Sbjct: 266 DEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVL 325

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  Y R+G  E    V   M++     +  TY+IL+ +YG+ G  +++  LF  +     
Sbjct: 326 LEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNT 385

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           +PD  T+ + +  +     ++  + +F +M +    P+  T + LI AC
Sbjct: 386 EPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFAC 434



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 88/181 (48%), Gaps = 1/181 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           + E MK+  ++P++ ++  ++ + ++ G +     G+  +M   G++PD    N++L   
Sbjct: 200 LLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCAC 259

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              G  ++ E V   M +G    DI+TY  L++ +G+   ++K+  L + + +    P++
Sbjct: 260 SNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEI 319

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            ++   L AY+R         +F  M +AGC P+  T  +L+       + ++V  L   
Sbjct: 320 SSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLE 379

Query: 240 M 240
           M
Sbjct: 380 M 380



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 2/172 (1%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           ++    L+   +++ G+  +   +   M +    KP+  +   M++L GR G  EK  ++
Sbjct: 106 SLNDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDI 165

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
              M     +  + +Y  LIN YGR G  E    L + +  +R+ P ++T+ + + + +R
Sbjct: 166 FEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCAR 225

Query: 192 KKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             L +   L +F EM   G  PD  T   L+ ACS+    ++   + RTM++
Sbjct: 226 GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNE 277



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 75/165 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF  M+  G  P  +++ +LL  Y K G   +   +  +M  S  +PD    N+++
Sbjct: 337 DATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLI 396

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +++G  G F+++  +   M + +   ++ TY  LI   G+GG  +  + +   +  K + 
Sbjct: 397 DVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMI 456

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           P    +T  + AY +  +Y   L     M + G  P   T   LI
Sbjct: 457 PSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLI 501



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 86/185 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA  +   M   G+ P+ K++  ++ AY +     +    +N M++ G KP     N++
Sbjct: 441 DDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTL 500

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + ++ R G +++ E +L  M     A +  ++N +I  + +GG  E+    +  +   RL
Sbjct: 501 IYMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRL 560

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD  T  + L+ Y    L    +E F+E+  +G  P+     ++++  +  D+  +   
Sbjct: 561 VPDERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYE 620

Query: 236 LVRTM 240
           L+  M
Sbjct: 621 LLDEM 625



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 74/152 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A      M  +G  PT++++  L+  +++ G   + E ++ +M   G+  +    N 
Sbjct: 475 YEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARERDSFNG 534

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + GQFE+  +    MEK     D  T   ++++Y   G +++    FQ + A  
Sbjct: 535 VIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKASG 594

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + P+V+ +   LA Y++   +    E+ +EM+
Sbjct: 595 ILPNVMCYCMMLAVYAKSDRWNEAYELLDEML 626



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 77/175 (44%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF    YF +   +F +M    + P M+++  L+ A  K G     + ++  M + G+ P
Sbjct: 398 VFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIP 457

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
            +     ++  YG+   +E+    L  M +      I TYN LI ++ RGG  ++ E + 
Sbjct: 458 SSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAIL 517

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
             +    +  +  ++   +  + +   +   ++ + EM  +   PD  T + ++S
Sbjct: 518 LKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLS 572


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  A+F+ M   G+ P + ++  LL AY+  G   +   + N + K+GL+PD     S+L
Sbjct: 206 NCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLL 265

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YGR  Q EK  EV   M+K S   +  +YN LI+ YG  G +++  GL   +    ++
Sbjct: 266 NAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQ 325

Query: 177 PDVVTWTSRLAAYSRKKL-----------------------------------YRRCLEI 201
           PDVV+ ++ LAA  R +                                    Y + LE+
Sbjct: 326 PDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALEL 385

Query: 202 FEEMIDAGCYPDGGTAKVLISACS 225
           +  M ++   PD  T  +LIS  S
Sbjct: 386 YTSMRESNVKPDAVTYNILISGSS 409



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 23/226 (10%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +T  L  +  S     A  VF +MK+    P   S+  L+ AY   G + +  G+++
Sbjct: 258 IVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLH 317

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M K G++PD   I+++L   GR  Q  ++E +L A        +   YN  I  Y   G
Sbjct: 318 EMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFG 377

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID----------- 207
             EK   L+ S+    +KPD VT+   ++  S+   Y   L  FE+M+D           
Sbjct: 378 DYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEGKL 437

Query: 208 ------------AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
                       +GC+PD  T   LI A ++    ++   L + M 
Sbjct: 438 SEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEME 483



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 5/195 (2%)

Query: 57  DAHAVFEEMK--RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +A  +F  M+  R    P + ++  ++ +Y   G V  C+ + + M   G+KP+    NS
Sbjct: 169 EAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNS 228

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y   G   +   +   ++K     DI +Y  L+N YGR    EK   +F  +    
Sbjct: 229 LLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS 288

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+ V++ + + AY    + +  + +  EM   G  PD  +   L++AC    QI ++ 
Sbjct: 289 CKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIE 348

Query: 235 TLV---RTMHKDMKT 246
           T++   R+   D+ T
Sbjct: 349 TILEAARSRGIDLNT 363



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 23/211 (10%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  EM++ GI P + S   LL A  +   + + E ++      G+  +T   NS
Sbjct: 309 LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNS 368

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-------FIEKM---- 163
            +  Y   G +EK  E+ T+M + +   D  TYNILI+   + G       F E M    
Sbjct: 369 GIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSK 428

Query: 164 ------------EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
                       E  F S+      PDV+T+T+ + AY+    ++R  ++F+EM   G  
Sbjct: 429 VSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIP 488

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           PD      L+ A +   + E+V  L+  M K
Sbjct: 489 PDAIICSSLMEAFNKGGEPERVLQLMEFMKK 519



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L        +S A + FE MK   +T    +  +++    K G   +   + N
Sbjct: 116 LVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFN 175

Query: 99  QMHKSGLK--PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M +   K  PD     S+++ Y   GQ E  + +   M       +I  YN L+  Y  
Sbjct: 176 SMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYAS 235

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +   +F  +    L+PD+V++TS L AY R     +  E+F +M    C P+  +
Sbjct: 236 RGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVS 295

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   +++   L+  M KD
Sbjct: 296 YNALIDAYGSAGMLKEAVGLLHEMEKD 322



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 17/202 (8%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M R  I PT  ++  ++ A    GN  K   +  +M ++G+ PD    N +L+   
Sbjct: 68  IMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALK 127

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK--PD 178
              Q+ K       M+  +  +D  T NI+I+   + G   +   LF S+  +R K  PD
Sbjct: 128 NGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPD 187

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           VVT+TS + +Y        C  IF+ M+  G  P+      L+ A +S           R
Sbjct: 188 VVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYAS-----------R 236

Query: 239 TMHKDMKTALPIYFNLYGEKGV 260
            MH++   AL I FNL  + G+
Sbjct: 237 GMHRE---ALAI-FNLIKKNGL 254



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  Y++   V +  G+  +M +   KPD  + NS+++ + R GQ+     ++  M + 
Sbjct: 16  MMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRA 75

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     +TYN +IN  G  G  +K   L + +    + PD+VT    L+A      Y + 
Sbjct: 76  AIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKA 135

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           +  FE M  A    D  T  ++I       Q  +   L  +M ++ +T  P
Sbjct: 136 ISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSM-RERRTKCP 185



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           + +Y A    Y ++I +Y R   +++  GLF  +   R KPD   + S + A+SR   +R
Sbjct: 4   QDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWR 63

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             + I E+M+ A   P   T   +I+AC +    ++   L + M ++
Sbjct: 64  WAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTEN 110



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 79/193 (40%), Gaps = 35/193 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A + F  MK+ G  P + ++  L+ AY+  G   +   +  +M  +G+ PD  + +S
Sbjct: 437 LSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSS 496

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSY---------------------------------- 140
           ++  + + G+ E++ +++  M+K S                                   
Sbjct: 497 LMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSL 556

Query: 141 -AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            +  + T N ++N  G+ G  E M  LF  +        + T+   L        +R+ +
Sbjct: 557 SSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSCSTVGLSTYAVVLRNLLVVGKWRKYI 616

Query: 200 EIFEEMIDAGCYP 212
           E+ + M D+G +P
Sbjct: 617 EVLQWMEDSGVHP 629



 Score = 38.1 bits (87), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/119 (19%), Positives = 55/119 (46%)

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
           +K G +++ E   + M KSG  PD     +++  Y   G +++  ++   ME      D 
Sbjct: 432 TKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDA 491

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
              + L+  + +GG  E++  L + +  K +  +  ++   +A+ +  + ++   E+ E
Sbjct: 492 IICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIE 550


>gi|218194011|gb|EEC76438.1| hypothetical protein OsI_14128 [Oryza sativa Indica Group]
          Length = 669

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 1/163 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM   G TP   +++ L+ A+++ G  A+   V+ QM   G  P       +L+LYG
Sbjct: 109 LFAEMAATGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYG 168

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+F+ + E+   M + +   D +TYN+L  ++G GGF +++  LFQ +    ++PD+ 
Sbjct: 169 RQGRFDGVRELFREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDID 227

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T  + + A  R  L+    E+ + +   G  P       L+ A
Sbjct: 228 TCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEA 270



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 1/160 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G+ P   S+  ++ A++  GN+++   +  +M  +G  PD      ++  + R+G 
Sbjct: 78  MLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHTPDPSAYLGLMEAHTRVGA 137

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   VL  M+        +TY +L+++YGR G  + +  LF+ +    + PD  T+  
Sbjct: 138 TAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNV 196

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               +     ++  +E+F++M+ +   PD  T + ++ AC
Sbjct: 197 LFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVAC 236



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           + +A+  F  M  +G  PT++++  L  A++K G   + E + ++M + + ++ D    +
Sbjct: 277 YEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFD 336

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  Y +  Q +   +    M K  +  D  +   ++N Y   G I++ +  F+ L + 
Sbjct: 337 ALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSM 396

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              P ++ +   L+ Y+R   +    ++ EEM
Sbjct: 397 VTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 428



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 89/209 (42%), Gaps = 18/209 (8%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGN----VAKCEGVINQMHKS---GLKPDTFVINSMLN 117
           MK  G+ PT  ++  +L A ++  +         G+  +M       ++PD    N++L 
Sbjct: 1   MKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLA 60

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                   ++ E +L  M +     D ++Y  +++ +   G + ++  LF  + A    P
Sbjct: 61  AAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHTP 120

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D   +   + A++R       + +  +M   GC P   T +VL+     + + +     V
Sbjct: 121 DPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDG----V 176

Query: 238 RTMHKDMKTALP-------IYFNLYGEKG 259
           R + ++M+T +P       + F ++G+ G
Sbjct: 177 RELFREMRTTVPPDTATYNVLFRVFGDGG 205



 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/198 (18%), Positives = 85/198 (42%), Gaps = 8/198 (4%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF    +F +   +F++M    + P + +   ++ A  + G       V++ +   G+ P
Sbjct: 200 VFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVP 259

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++   G    +E+       M +      I TYN L N + +GG  ++ E +F
Sbjct: 260 TAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIF 319

Query: 168 QSLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C- 224
             +     ++ D  ++ + + AY +       ++ + EM  +   PD  + + +++A C 
Sbjct: 320 SRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 379

Query: 225 -----SSEDQIEQVTTLV 237
                 S++Q E++ ++V
Sbjct: 380 AGVIDESKEQFEELQSMV 397



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F EM R  + P   ++ +L   +   G   +   +   M  S ++PD     +
Sbjct: 173 FDGVRELFREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCEN 231

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   GR G  E   EVL  +           Y  L+   G     E+    F  +    
Sbjct: 232 VMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIG 291

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQV 233
             P + T+ +   A+++  L++    IF  M  +A    D  +   LI A     Q++  
Sbjct: 292 SLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDA 351

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 352 VKAYMEMRK 360


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  A+F+ M   G+ P + ++  LL AY+  G   +   + N + K+GL+PD     S+L
Sbjct: 206 NCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLL 265

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YGR  Q EK  EV   M+K S   +  +YN LI+ YG  G +++  GL   +    ++
Sbjct: 266 NAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQ 325

Query: 177 PDVVTWTSRLAAYSRKKL-----------------------------------YRRCLEI 201
           PDVV+ ++ LAA  R +                                    Y + LE+
Sbjct: 326 PDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALEL 385

Query: 202 FEEMIDAGCYPDGGTAKVLISACS 225
           +  M ++   PD  T  +LIS  S
Sbjct: 386 YTSMRESNVKPDAVTYNILISGSS 409



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 5/195 (2%)

Query: 57  DAHAVFEEMK--RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +A  +F  M+  R    P + ++  ++ +Y   G V  C+ + + M   G+KP+    NS
Sbjct: 169 EAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNS 228

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y   G   +   +   ++K     DI +Y  L+N YGR    EK   +F  +    
Sbjct: 229 LLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS 288

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+ V++ + + AY    + +  + +  EM   G  PD  +   L++AC    QI ++ 
Sbjct: 289 CKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIE 348

Query: 235 TLV---RTMHKDMKT 246
           T++   R+   D+ T
Sbjct: 349 TILEAARSRGIDLNT 363



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 82/170 (48%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +T  L  +  S     A  VF +MK+    P   S+  L+ AY   G + +  G+++
Sbjct: 258 IVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLH 317

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M K G++PD   I+++L   GR  Q  ++E +L A        +   YN  I  Y   G
Sbjct: 318 EMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFG 377

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
             EK   L+ S+    +KPD VT+   ++  S+   Y   L  FE+M+D+
Sbjct: 378 DYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDS 427



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L        +S A + FE MK   +T    +  +++    K G   +   + N
Sbjct: 116 LVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFN 175

Query: 99  QMHKSGLK--PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M +   K  PD     S+++ Y   GQ E  + +   M       +I  YN L+  Y  
Sbjct: 176 SMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYAS 235

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +   +F  +    L+PD+V++TS L AY R     +  E+F +M    C P+  +
Sbjct: 236 RGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVS 295

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   +++   L+  M KD
Sbjct: 296 YNALIDAYGSAGMLKEAVGLLHEMEKD 322



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 17/202 (8%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M R  I PT  ++  ++ A    GN  K   +  +M ++G+ PD    N +L+   
Sbjct: 68  IMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALK 127

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK--PD 178
              Q+ K       M+  +  +D  T NI+I+   + G   +   LF S+  +R K  PD
Sbjct: 128 NGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPD 187

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           VVT+TS + +Y        C  IF+ M+  G  P+      L+ A +S           R
Sbjct: 188 VVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYAS-----------R 236

Query: 239 TMHKDMKTALPIYFNLYGEKGV 260
            MH++   AL I FNL  + G+
Sbjct: 237 GMHRE---ALAI-FNLIKKNGL 254



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  Y++   V +  G+  +M +   KPD  + NS+++ + R GQ+     ++  M + 
Sbjct: 16  MMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRA 75

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     +TYN +IN  G  G  +K   L + +    + PD+VT    L+A      Y + 
Sbjct: 76  AIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKA 135

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           +  FE M  A    D  T  ++I       Q  +   L  +M ++ +T  P
Sbjct: 136 ISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSM-RERRTKCP 185



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           + +Y A    Y ++I +Y R   +++  GLF  +   R KPD   + S + A+SR   +R
Sbjct: 4   QDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWR 63

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             + I E+M+ A   P   T   +I+AC +    ++   L + M ++
Sbjct: 64  WAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTEN 110


>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
          Length = 482

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 1/168 (0%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            + A   FE+MK +    P + ++ +LL A+++ G+  + + +   + +S + PD +  N
Sbjct: 163 LAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYN 222

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ YG+ G   +ME VL  M+      D+ T+NILI+ YGR    +KME +F+SL   
Sbjct: 223 GVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRS 282

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + KP   T+ S +  Y + +L  +   + ++M + G  P+  T + LI
Sbjct: 283 KEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLI 330



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 75/148 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+++    ++P + ++  ++ AY K G + + E V+ +M  +  +PD    N +++ YG
Sbjct: 205 LFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYG 264

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R   F+KME+V  ++ +        T+N +I  YG+    EK E +   +     KP+ V
Sbjct: 265 RKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYV 324

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           T    +  Y+      R  +IF+E++ +
Sbjct: 325 TQECLIMMYAYCDCVSRARQIFDELVSS 352



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 24/198 (12%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML--NLYGR---------LGQFEKM 128
           L++   + G +     + +QM  SG +PDT V NS++  +L+ R         LG FEKM
Sbjct: 114 LISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGTHLHSRDKSKALAKALGYFEKM 173

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           + +           +I TYNIL+  + + G  ++++ LF+ L    + PD+ T+   + A
Sbjct: 174 KTI------DRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDA 227

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQV-TTLVRTMHKDM 244
           Y +  +      +   M    C PD  T  +LI +   +   D++EQV  +L+R+     
Sbjct: 228 YGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKE--- 284

Query: 245 KTALPIYFNLYGEKGVAR 262
           K   P + ++    G AR
Sbjct: 285 KPTHPTFNSMITNYGKAR 302



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 85/170 (50%), Gaps = 5/170 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLL----LTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVI 112
           A  +F +M+  G  P    +  L    L +  K+  +AK  G   +M      +P+    
Sbjct: 127 AMWLFSQMRNSGCRPDTSVYNSLIGTHLHSRDKSKALAKALGYFEKMKTIDRCQPNIVTY 186

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +L  + + G  ++++ +   +++   + DI TYN +++ YG+ G I +ME +   + +
Sbjct: 187 NILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKS 246

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            + +PDV+T+   + +Y RK+ + +  ++F+ ++ +   P   T   +I+
Sbjct: 247 NQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMIT 296



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++  +V   MK     P + +  +L+ +Y +     K E V   + +S  KP     NS
Sbjct: 234 ITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNS 293

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+  YG+    EK E VL  M +  +  +  T   LI +Y     + +   +F  L + +
Sbjct: 294 MITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDELVSSQ 353

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
               + +  + L AY    L     ++ + +I  G  P   T K+L  A +  +  + + 
Sbjct: 354 NNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLLYKAYTKANDKKLIQ 413

Query: 235 TLVRTMH 241
            L++ M+
Sbjct: 414 KLLKRMN 420



 Score = 44.7 bits (104), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 64/159 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     VF+ + R    PT  +   ++T Y K     K E V+++M + G KP+      
Sbjct: 269 FDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQEC 328

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +Y       +  ++   +        +S+ N +++ Y   G   + + L  S+  K 
Sbjct: 329 LIMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKG 388

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             P   T+     AY++    +   ++ + M   G  P+
Sbjct: 389 AVPSASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPN 427



 Score = 40.8 bits (94), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 12/127 (9%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS----RLAAYSRKKLY 195
           Y AD   Y+ LI++ GR G I     LF  +     +PD   + S     L +  + K  
Sbjct: 104 YVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGTHLHSRDKSKAL 163

Query: 196 RRCLEIFEEM--IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            + L  FE+M  ID  C P+  T  +L+ A +     +Q+  L + + +      P+  +
Sbjct: 164 AKALGYFEKMKTIDR-CQPNIVTYNILLRAFAQAGDTKQLDILFKDLDES-----PVSPD 217

Query: 254 LYGEKGV 260
           +Y   GV
Sbjct: 218 IYTYNGV 224



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY----GRGGFIEKM 163
           D  + + ++++ GR GQ      + + M       D S YN LI  +     +   + K 
Sbjct: 107 DNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGTHLHSRDKSKALAKA 166

Query: 164 EGLFQSLPA-KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            G F+ +    R +P++VT+   L A+++    ++   +F+++ ++   PD  T   ++ 
Sbjct: 167 LGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMD 226

Query: 223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEK 258
           A      I ++ +++  M  +      I FN+    YG K
Sbjct: 227 AYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRK 266


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 89/184 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A ++F  +  LG+ P +++    +    K G V +   V +++ + GL PD F  +S++
Sbjct: 507 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 566

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G+ EK  E+   M     A +I  YN L++   + G I++   LF  +P K L+
Sbjct: 567 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE 626

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+++ +  Y + +       +F EM   G  P       L+  C  E  +E+   L
Sbjct: 627 PDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNL 686

Query: 237 VRTM 240
            R M
Sbjct: 687 FREM 690



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 88/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM++  + P+  S+  ++       +++    ++ +M  SGLKP+  V ++++ 
Sbjct: 333 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIM 392

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G+ E+   +L  M     A DI  YN +I+   + G +E+       +  + LKP
Sbjct: 393 GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP 452

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+ + +  YS+        + F+EM+D G  P+     VLI+       + +  ++ 
Sbjct: 453 DAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIF 512

Query: 238 RTMH 241
           R +H
Sbjct: 513 RHLH 516



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF E+K  G+ P + ++  L++ + K G V K   + ++M   G+ P+ F+ N+++
Sbjct: 542 EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALV 601

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  ++  ++   M +     D  TY+ +I+ Y +   + +   LF  +P+K ++
Sbjct: 602 DGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQ 661

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P    + + +    ++    + + +F EM+  G +    +   LI       +I++ + L
Sbjct: 662 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQL 720

Query: 237 VRTM 240
            + M
Sbjct: 721 FQEM 724



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 23  FNYLPYPSHFMLINFLLLQHT-----PNLFVFIFSIYFSDAHAVFEEMKRL-------GI 70
            N L +     L N LL + T     PN+ V+   I    +    EE +RL       G+
Sbjct: 356 INGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGV 415

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P +  +  +++  SK G + +    + ++   GLKPD     + +  Y + G+  +  +
Sbjct: 416 APDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK 475

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
               M       +   Y +LIN + + G + +   +F+ L A  + PDV T ++ +    
Sbjct: 476 YFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLL 535

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +    +  L++F E+ + G  PD  T   LIS    + ++E+   L   M
Sbjct: 536 KNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 585



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 86/183 (46%), Gaps = 1/183 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM + G   T+ S   L+  Y K+  + +   +  +M    + PD     ++++
Sbjct: 683 AMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVID 741

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+ E+   +   M++ +   D  TY  L+  Y + G   ++  LF+ + AK +KP
Sbjct: 742 WHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKP 801

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+   + A+ ++       ++ +E++  G    G    +LI+A    + + + + L+
Sbjct: 802 DEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLL 861

Query: 238 RTM 240
             M
Sbjct: 862 DEM 864



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 78/184 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A     E++  G+ P   +    +  YSKTG + +     ++M   GL P+  +   ++
Sbjct: 437 EASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLI 496

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + + G   +   +   +       D+ T +  I+   + G +++   +F  L  K L 
Sbjct: 497 NGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLV 556

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV T++S ++ + ++    +  E+ +EM   G  P+      L+        I++   L
Sbjct: 557 PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKL 616

Query: 237 VRTM 240
              M
Sbjct: 617 FDGM 620



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 82/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A   FEEM++ G+ P   +   L+  + + G++ +   + + M   G+  +    N +
Sbjct: 226 NEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVL 285

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+ EK  E+L  M       +  T+ +LI  Y R   + +   L   +  + L
Sbjct: 286 IHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNL 345

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P  V++ + +      K      ++ E+M  +G  P+      LI   +SE +IE+   
Sbjct: 346 VPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARR 405

Query: 236 LVRTM 240
           L+  M
Sbjct: 406 LLDGM 410



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 75/165 (45%), Gaps = 1/165 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G+ P   ++ ++     +   + + +    +M K+GLKPD    +++++ + R G 
Sbjct: 200 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 259

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +++  +   M       ++ TYN+LI+   + G +EK   + + +     KP+  T+  
Sbjct: 260 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 319

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
            +  Y R+    R LE+ +EM      P   +   +I+  C  +D
Sbjct: 320 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKD 364


>gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group]
          Length = 482

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 1/168 (0%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            + A   FE+MK +    P + ++ +LL A+++ G+  + + +   + +S + PD +  N
Sbjct: 163 LAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYN 222

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ YG+ G   +ME VL  M+      D+ T+NILI+ YGR    +KME +F+SL   
Sbjct: 223 GVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRS 282

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + KP   T+ S +  Y + +L  +   + ++M + G  P+  T + LI
Sbjct: 283 KEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLI 330



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 75/148 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+++    ++P + ++  ++ AY K G + + E V+ +M  +  +PD    N +++ YG
Sbjct: 205 LFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYG 264

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R   F+KME+V  ++ +        T+N +I  YG+    EK E +   +     KP+ V
Sbjct: 265 RKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYV 324

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           T    +  Y+      R  +IF+E++ +
Sbjct: 325 TQECLIMMYAYCDCVSRARQIFDELVSS 352



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 21/178 (11%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML--NLYGR---------LGQFEKM 128
           L++   + G +     + +QM  SG +PDT V NS++  +L+ R         LG FEKM
Sbjct: 114 LISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGAHLHSRDKSKALAKALGYFEKM 173

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           + +           +I TYNIL+  + + G  ++++ LF+ L    + PD+ T+   + A
Sbjct: 174 KTI------DRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDA 227

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQV-TTLVRTMHK 242
           Y +  +      +   M    C PD  T  +LI +   +   D++EQV  +L+R+  K
Sbjct: 228 YGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEK 285



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 86/170 (50%), Gaps = 5/170 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAY----SKTGNVAKCEGVINQMHK-SGLKPDTFVI 112
           A  +F +M+  G  P    +  L+ A+     K+  +AK  G   +M      +P+    
Sbjct: 127 AMWLFSQMRNSGCRPDTSVYNSLIGAHLHSRDKSKALAKALGYFEKMKTIDRCQPNIVTY 186

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +L  + + G  ++++ +   +++   + DI TYN +++ YG+ G I +ME +   + +
Sbjct: 187 NILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKS 246

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            + +PDV+T+   + +Y RK+ + +  ++F+ ++ +   P   T   +I+
Sbjct: 247 NQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMIT 296



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++  +V   MK     P + +  +L+ +Y +     K E V   + +S  KP     NS
Sbjct: 234 ITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNS 293

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+  YG+    EK E VL  M +  +  +  T   LI +Y     + +   +F  L + +
Sbjct: 294 MITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDELVSSQ 353

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
               + +  + L AY    L     ++ + +I  G  P   T K+L  A +  +  + + 
Sbjct: 354 NNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLLYKAYTKANDKKLIQ 413

Query: 235 TLVRTMH 241
            L++ M+
Sbjct: 414 KLLKRMN 420



 Score = 44.7 bits (104), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 64/159 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     VF+ + R    PT  +   ++T Y K     K E V+++M + G KP+      
Sbjct: 269 FDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQEC 328

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +Y       +  ++   +        +S+ N +++ Y   G   + + L  S+  K 
Sbjct: 329 LIMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKG 388

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             P   T+     AY++    +   ++ + M   G  P+
Sbjct: 389 AVPSASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPN 427



 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY----SRKKLY 195
           Y AD   Y+ LI++ GR G I     LF  +     +PD   + S + A+     + K  
Sbjct: 104 YVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGAHLHSRDKSKAL 163

Query: 196 RRCLEIFEEM--IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            + L  FE+M  ID  C P+  T  +L+ A +     +Q+  L + + +      P+  +
Sbjct: 164 AKALGYFEKMKTIDR-CQPNIVTYNILLRAFAQAGDTKQLDILFKDLDES-----PVSPD 217

Query: 254 LYGEKGV 260
           +Y   GV
Sbjct: 218 IYTYNGV 224



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY----GRGGFIEKM 163
           D  + + ++++ GR GQ      + + M       D S YN LI  +     +   + K 
Sbjct: 107 DNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGAHLHSRDKSKALAKA 166

Query: 164 EGLFQSLPA-KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            G F+ +    R +P++VT+   L A+++    ++   +F+++ ++   PD  T   ++ 
Sbjct: 167 LGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMD 226

Query: 223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEK 258
           A      I ++ +++  M  +      I FN+    YG K
Sbjct: 227 AYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRK 266


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 94/183 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  E++R GI P + ++  L++A S+  N+ +   V + M     +PD +  N+M++
Sbjct: 305 ALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMIS 364

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR  +  K EE+   +E   +  D  TYN L+  + R G  EK+  + + +  +    
Sbjct: 365 VYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQ 424

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y ++  + + ++I+ +M  +G  PD  T  VLI +     ++E+   ++
Sbjct: 425 DEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVM 484

Query: 238 RTM 240
             M
Sbjct: 485 SEM 487



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A AVF +M+     P + ++  +++ Y +     K E +  ++   G  PD    NS
Sbjct: 337 LEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNS 396

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + R G  EK+ ++   M K  +  D  TYN +I++YG+ G  ++   +++ + +  
Sbjct: 397 LLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSG 456

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD VT+T  + +  +         +  EM+DAG  P   T   LI A +   + E+  
Sbjct: 457 RNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAE 516

Query: 235 TLVRTMHK 242
                M +
Sbjct: 517 ETFNCMRR 524



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 96/197 (48%), Gaps = 6/197 (3%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK- 127
            +  T++ +  ++  Y++ G  +K + +++ M + G  PD    N+++N   + G  E  
Sbjct: 244 SVGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPN 303

Query: 128 -MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
              ++L  + +     DI TYN LI+   R   +E+   +F  + + R +PD+ T+ + +
Sbjct: 304 LALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMI 363

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
           + Y R    R+  E+F+E+   G +PD  T   L+ A S E   E+V  +   M K    
Sbjct: 364 SVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFG 423

Query: 247 ALPIYFN----LYGEKG 259
              + +N    +YG++G
Sbjct: 424 QDEMTYNTIIHMYGKQG 440



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 42/241 (17%)

Query: 44  PNLFVF--IFSIYFSDAHA-----VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y   A A     +F+E++  G  P   ++  LL A+S+ GN  K   +
Sbjct: 354 PDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDI 413

Query: 97  INQMHKSGLKPDTFVINSMLNLYGR--------------------------------LGQ 124
             +M K G   D    N+++++YG+                                LG+
Sbjct: 414 CEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGK 473

Query: 125 FEKMEE---VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
             K+EE   V++ M        + TY+ LI  Y + G  E+ E  F  +    +KPD + 
Sbjct: 474 ASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLA 533

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           ++  L  + R    ++ + ++ EMI  G  PD G  +V++ A   E+  + V  ++R M 
Sbjct: 534 YSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDME 593

Query: 242 K 242
           +
Sbjct: 594 E 594



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +   ++  MK  G  PTM  + ++L    K   V   E ++ +M ++G +PD  + NS+L
Sbjct: 897  EVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSIL 956

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             LY  +  F+ M  +   ++  S   D  TYN LI +Y R    E+   L   + +  L+
Sbjct: 957  KLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLE 1016

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P + T+ S + A++++++Y +  E+FEE+   G
Sbjct: 1017 PKLDTYRSLITAFNKQRMYEQAEELFEELRSNG 1049



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 94/194 (48%), Gaps = 1/194 (0%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +  ++  +M+ LG+ P + ++  L+TA++K     + E +  ++  +G K D    + M+
Sbjct: 1002 EGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMM 1061

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
              Y   G   K E +L  M++      IST ++L+  YG+ G  E+ E + ++L    + 
Sbjct: 1062 KTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVV 1121

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             D + ++S + AY +K  ++  +E   EM +AG  PD       I A +  +   +   L
Sbjct: 1122 LDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIVL 1181

Query: 237  VRTMHKDMKTALPI 250
            +  + +D    LPI
Sbjct: 1182 LNAL-QDAGFDLPI 1194



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 89/198 (44%)

Query: 46   LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
            L   I     ++ + V +E++ +G+  +  S +L L A+++ GN+ + + + N M  +G 
Sbjct: 851  LQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGY 910

Query: 106  KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
             P   V   ML L  +  +   +E +L  ME+  +  D+   N ++ +Y      + M  
Sbjct: 911  FPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGI 970

Query: 166  LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            ++Q +    LKPD  T+ + +  Y R +       +  +M   G  P   T + LI+A +
Sbjct: 971  IYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFN 1030

Query: 226  SEDQIEQVTTLVRTMHKD 243
             +   EQ   L   +  +
Sbjct: 1031 KQRMYEQAEELFEELRSN 1048



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 2/156 (1%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +  A  +FEE++  G       + L++  Y  +G+  K E ++  M +SG++P    ++ 
Sbjct: 1035 YEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHL 1094

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY-GRGGFIEKMEGLFQSLPAK 173
            ++  YG+ GQ E+ E VL  +       D   Y+ +I+ Y  +G F   +E L +   A 
Sbjct: 1095 LMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAG 1154

Query: 174  RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
             ++PD   WT  + A +  +     + +   + DAG
Sbjct: 1155 -IEPDHRIWTCFIRAATLSEGTNEAIVLLNALQDAG 1189



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 1/126 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  EM   G+ PT+ ++  L+ AY+K G   + E   N M +SG+KPD    + ML
Sbjct: 479 EAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVML 538

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA-KRL 175
           + + R  + +K   +   M +  +  D   Y ++++   R    + ++ + + +     +
Sbjct: 539 DFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSGM 598

Query: 176 KPDVVT 181
            P V++
Sbjct: 599 NPQVIS 604



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           P+  ++ ++L + G+  Q E +   + A  + S    +  YN ++ +Y R G   K++ L
Sbjct: 213 PNARMVATILGVLGKANQ-EALAVEIFARAESSVGDTVQVYNAMMGVYARNGRFSKVKEL 271

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR--CLEIFEEMIDAGCYPDGGTAKVLISAC 224
              +  +   PD+V++ + + A  +         L++  E+  +G  PD  T   LISAC
Sbjct: 272 LDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISAC 331

Query: 225 SSEDQIEQVTTLVRTMH 241
           S E  +E+   +   M 
Sbjct: 332 SRESNLEEAVAVFSDME 348



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 84/196 (42%)

Query: 46   LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
            +  + FS  +  A A+F  M R G +PT+ S   LL A      + +   VI ++   GL
Sbjct: 816  IHAYAFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGL 875

Query: 106  KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            K     I   L  + + G   +++++   M+   Y   +  Y I++ +  +   +  +E 
Sbjct: 876  KISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVET 935

Query: 166  LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            +   +     +PD+    S L  Y   + ++    I++++ DA   PD  T   LI    
Sbjct: 936  MLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYC 995

Query: 226  SEDQIEQVTTLVRTMH 241
             + + E+  +L+  M 
Sbjct: 996  RDRRPEEGFSLMNKMR 1011



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 2/186 (1%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ-MHKSGLKPDTFVINSM 115
            D   +  EM+  G  P ++    +L  Y    +  K  G+I Q +  + LKPD    N++
Sbjct: 932  DVETMLCEMEEAGFQPDLQICNSILKLYLGIEDF-KSMGIIYQKIQDASLKPDEETYNTL 990

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            + +Y R  + E+   ++  M        + TY  LI  + +    E+ E LF+ L +   
Sbjct: 991  IIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGY 1050

Query: 176  KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            K D   +   +  Y     +R+   +   M ++G  P   T  +L+ +     Q E+   
Sbjct: 1051 KLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAEN 1110

Query: 236  LVRTMH 241
            +++ + 
Sbjct: 1111 VLKNLR 1116



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 3/151 (1%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS--YAADISTYNILINI 153
           + + M  +G++    +   M+++Y R+   E    +L   EK       DIS Y  ++  
Sbjct: 724 IFSDMRFNGVESSECLYQGMVSVYCRMDLPETAHHLLYHAEKNGIILDNDISVYIDIVET 783

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+    +K E L  SL  +  K D   W + + AY+    Y R   IF  M+  G  P 
Sbjct: 784 YGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDGPSPT 843

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
             +   L+ A   + ++ ++  +++ + +DM
Sbjct: 844 VDSVNGLLQALIVDRRLNELYVVIQEL-QDM 873


>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
 gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
          Length = 390

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +   M   GIT  +  + ++ +A  K   V+    + ++M  +G+ PD F  N M
Sbjct: 164 AEAIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIM 223

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ +GR+G  +K  E+   M+  S   D+ TYN +IN  G+ G +++   LF+ +  K  
Sbjct: 224 ISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGY 283

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T++  +  + +         +F+EMI  GC P+  T  +L+       +  +   
Sbjct: 284 DPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHK 343

Query: 236 LVRTMHK 242
           L  T+ +
Sbjct: 344 LYETLKQ 350



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 83/161 (51%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +++++MK  G+ P + ++ ++++++ + G V K   +  +M  S  KPD    NSM+N  
Sbjct: 203 SLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCL 262

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+ G  ++   +   M++  Y  D+ TY+ILI  +G+   ++    LF  + A+   P++
Sbjct: 263 GKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNI 322

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           VT+   L    R    R   +++E +   G  PD  T  +L
Sbjct: 323 VTYNILLDCLERHGKTREAHKLYETLKQQGLAPDSITYSIL 363



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S + S+AH+VF  M          + + +L A       A+   +++ M + G+  D  +
Sbjct: 125 SGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEKGITTDVGM 184

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N + +  G+L Q   M  +   M+    A D+ TYNI+I+ +GR G ++K   LF+ + 
Sbjct: 185 YNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMD 244

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               KPDV+T+ S +    +         +F++M + G  PD  T  +LI      ++++
Sbjct: 245 DSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVD 304

Query: 232 QVTTLVRTM 240
              +L   M
Sbjct: 305 MACSLFDEM 313



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 10/218 (4%)

Query: 32  FMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLG-ITPTMKSHM------LLLTAY 84
           FML   +     PN F +   +   D  A   ++ RL  I      H+       L+ A 
Sbjct: 66  FMLSKMIESDCQPNQFTYSIML---DVLATGGQLHRLNEILDICSGHLNRSVYSYLVKAL 122

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
            K+G+ ++   V  +M  S  K D     SML       +  +  ++L  M +     D+
Sbjct: 123 CKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEKGITTDV 182

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
             YNI+ +  G+   +  M  L+  + A  + PDV T+   ++++ R  L  +  E+FEE
Sbjct: 183 GMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEE 242

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           M D+ C PD  T   +I+       +++   L + M +
Sbjct: 243 MDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQE 280



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 3/181 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +  EEM   G    + ++  ++ A  K   V K   ++++M +S  +P+ F  + ML++ 
Sbjct: 31  SFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKAIFMLSKMIESDCQPNQFTYSIMLDVL 90

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              GQ  ++ E+L   +  S   + S Y+ L+    + G   +   +F  + +   K D 
Sbjct: 91  ATGGQLHRLNEIL---DICSGHLNRSVYSYLVKALCKSGHASEAHSVFCRMWSSHEKGDR 147

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
             + S L A    +     +++   M + G   D G   ++ SA     Q+  +++L   
Sbjct: 148 DAFVSMLEALCNAEKTAEAIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDK 207

Query: 240 M 240
           M
Sbjct: 208 M 208



 Score = 41.6 bits (96), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/103 (18%), Positives = 52/103 (50%)

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           M++ +   D  TY ILI + G+ G   K     + + +K    +++ + + + A  + K+
Sbjct: 1   MKQNNCDPDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKM 60

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             + + +  +MI++ C P+  T  +++   ++  Q+ ++  ++
Sbjct: 61  VDKAIFMLSKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEIL 103


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 89/184 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A ++F  +  LG+ P +++    +    K G V +   V +++ + GL PD F  +S++
Sbjct: 596 EALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 655

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G+ EK  E+   M     A +I  YN L++   + G I++   LF  +P K L+
Sbjct: 656 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE 715

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+++ +  Y + +       +F EM   G  P       L+  C  E  +E+   L
Sbjct: 716 PDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNL 775

Query: 237 VRTM 240
            R M
Sbjct: 776 FREM 779



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 87/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM++  + P+  S+  ++       +++    ++ +M  SGLKP+  V + ++ 
Sbjct: 422 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIM 481

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G+ E+   +L  M     A DI  YN +I+   + G +E+       +  + LKP
Sbjct: 482 AYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP 541

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+ + +  YS+        + F+EM+D G  P+     VLI+       + +  ++ 
Sbjct: 542 DAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIF 601

Query: 238 RTMH 241
           R +H
Sbjct: 602 RRLH 605



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF E+K  G+ P + ++  L++ + K G V K   + ++M   G+ P+ F+ N+++
Sbjct: 631 EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALV 690

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  ++  ++   M +     D  TY+ +I+ Y +   + +   LF  +P+K ++
Sbjct: 691 DGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQ 750

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P    + + +    ++    + + +F EM+  G +    +   LI       +I++ + L
Sbjct: 751 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQL 809

Query: 237 VRTM 240
            + M
Sbjct: 810 FQEM 813



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 23  FNYLPYPSHFMLINFLLLQHT-----PNLFVFIFSIYFSDAHAVFEEMKRL-------GI 70
            N L +     L N LL + T     PN+ V+   I    +    EE +RL       G+
Sbjct: 445 INGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGV 504

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P +  +  +++  SK G + +    + ++   GLKPD     + +  Y + G+  +  +
Sbjct: 505 APDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK 564

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
               M       +   Y +LIN + + G + +   +F+ L A  + PDV T ++ +    
Sbjct: 565 YFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLL 624

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +    +  L++F E+ + G  PD  T   LIS    + ++E+   L
Sbjct: 625 KNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 670



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 86/183 (46%), Gaps = 1/183 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM + G   T+ S   L+  Y K+  + +   +  +M    + PD     ++++
Sbjct: 772 AMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVID 830

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+ E+   +   M++ +   D  TY  L+  Y + G   ++  LF+ + AK +KP
Sbjct: 831 WHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKP 890

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+   + A+ ++       ++ +E++  G    G    +LI+A    + + + + L+
Sbjct: 891 DEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLL 950

Query: 238 RTM 240
             M
Sbjct: 951 DEM 953



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 84/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A   FEEM++ G+ P   +   L+  + + G++ +   + + M   G+  +    N +
Sbjct: 315 NEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVL 374

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+ EK  E+L  M       +  T+ +LI  Y R   + +   L   +  + L
Sbjct: 375 IHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNL 434

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P  V++ + +      K      ++ E+M  +G  P+     +LI A +SE +IE+   
Sbjct: 435 VPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARR 494

Query: 236 LVRTM 240
           L+  M
Sbjct: 495 LLDGM 499



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 84/193 (43%), Gaps = 8/193 (4%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F++   I          +A  +   M   G+ P   ++ ++     +   + + +  
Sbjct: 261 PNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLT 320

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M K+GLKPD    +++++ + R G  +++  +   M       ++ TYN+LI+   +
Sbjct: 321 FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK 380

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +EK   + + +     KP+  T+   +  Y R+    R LE+ +EM      P   +
Sbjct: 381 FGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVS 440

Query: 217 AKVLISA-CSSED 228
              +I+  C  +D
Sbjct: 441 YGAMINGLCHCKD 453



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 78/184 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A     E++  G+ P   +    +  YSKTG + +     ++M   GL P+  +   ++
Sbjct: 526 EASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLI 585

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + + G   +   +   +       D+ T +  I+   + G +++   +F  L  K L 
Sbjct: 586 NGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLV 645

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV T++S ++ + ++    +  E+ +EM   G  P+      L+        I++   L
Sbjct: 646 PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKL 705

Query: 237 VRTM 240
              M
Sbjct: 706 FDGM 709



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 74/161 (45%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ A  KTG++   + V+ +M + GL P+ F+ + ++    ++G  ++  E+  +M +  
Sbjct: 234 LVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKG 293

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              +  TY I+     R   + + +  F+ +    LKPD    ++ +  + R+      L
Sbjct: 294 LVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVL 353

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            I + M+  G   +  T  VLI       ++E+   +++ M
Sbjct: 354 RIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGM 394



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 78/185 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  EM   G+ P    + L++    + G++ +   +   M + GL P+T+    +  
Sbjct: 247 AKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITA 306

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R  +  + +     M+K     D +  + LI+ + R G I+++  +   + +  +  
Sbjct: 307 GLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPI 366

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+   +    +     +  EI + M+  GC P+  T  +LI     E  + +   L+
Sbjct: 367 NLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELL 426

Query: 238 RTMHK 242
             M K
Sbjct: 427 DEMEK 431



 Score = 44.3 bits (103), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 90/238 (37%), Gaps = 15/238 (6%)

Query: 27  PYPSHFMLINFLLL-----QHTPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKS 76
           PY S  +L + L         +P +F  +   Y       +A  VF   K   I  ++  
Sbjct: 136 PYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIR 195

Query: 77  HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
              LL    K G +     V N M  + +  D +    ++    + G     + VL  M+
Sbjct: 196 CNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMD 255

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           +     +   Y+++I    + G I++   L +S+  K L P+  T+T   A   R K   
Sbjct: 256 EKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMN 315

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
                FEEM   G  PD      LI     E  I++V  +     KD+  +  I  NL
Sbjct: 316 EAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI-----KDVMVSCGIPINL 368


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 92/186 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  +F +M    I P + +  +L+  + K G V + + V+  M K G+KPD     S
Sbjct: 247 LNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCS 306

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  + Q  K + +   M +G   A++ +YNI+IN + +   +++   LF+ +  K 
Sbjct: 307 LMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKN 366

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDVVT+ S +    +       L++ +EM D G   D  T   ++ A     Q+++  
Sbjct: 367 IIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAI 426

Query: 235 TLVRTM 240
            L+  M
Sbjct: 427 ALLTKM 432



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 93/185 (50%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+EM    I P + ++  L+    K+G ++    ++++MH  G+  D    NS+
Sbjct: 353 DEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSI 412

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +  Q +K   +LT M+      D+ TY ILI+   +GG ++  + +F+ L  K  
Sbjct: 413 LDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGY 472

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
              V T+T  +  +    L+ + L +  +M D GC P+  T +++I +   +D+ +    
Sbjct: 473 NITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEK 532

Query: 236 LVRTM 240
           L+R M
Sbjct: 533 LLREM 537



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/185 (18%), Positives = 85/185 (45%), Gaps = 3/185 (1%)

Query: 60  AVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  + ++R+    + P +  +  ++ +  K   V +   + ++M   G+ PD    ++++
Sbjct: 179 AALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALI 238

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +  LG+      +   M       D+ T++IL++ + + G +++ + +   +  + +K
Sbjct: 239 SGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIK 298

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+ S +  Y   K   +   IF  M   G   +  +  ++I+      ++++   L
Sbjct: 299 PDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNL 358

Query: 237 VRTMH 241
            + MH
Sbjct: 359 FKEMH 363



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 77/172 (44%), Gaps = 6/172 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A ++  EM+  GI   + +  +L+  +S+ G+      V   + K G +P+   + +
Sbjct: 72  YQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTT 131

Query: 115 MLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           ++    L G++ Q     + + A+    +  +   Y  LIN   + G       L + + 
Sbjct: 132 LIKGLCLKGQIHQALHFHDKVVAL---GFHLNKVCYGTLINGLCKVGQTSAALQLLRRVD 188

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            K ++P+VV + + + +  + KL     +++ EM+  G  PD  T   LIS 
Sbjct: 189 GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISG 240



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/183 (16%), Positives = 79/183 (43%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +VF  + + G  P   +   L+      G + +     +++   G   +     +++N  
Sbjct: 112 SVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGL 171

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++GQ     ++L  ++      ++  YN +I+   +   + +   L+  + +K + PDV
Sbjct: 172 CKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDV 231

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+++ ++ +         + +F +MI     PD  T  +L+     E ++++   ++  
Sbjct: 232 VTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAM 291

Query: 240 MHK 242
           M K
Sbjct: 292 MMK 294



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/168 (17%), Positives = 75/168 (44%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+    K G  +    ++ ++    ++P+  + N++++   ++    +  ++ + M    
Sbjct: 167 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 226

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + D+ TY+ LI+ +   G +    GLF  + ++ + PDV T++  +  + ++   +   
Sbjct: 227 ISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAK 286

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247
            +   M+  G  PD  T   L+       Q+ +  ++  TM +   TA
Sbjct: 287 NVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTA 334



 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 55/132 (41%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           P  F    +L    ++  ++    +   ME    A+D+ T+NILIN + + G       +
Sbjct: 54  PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSV 113

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           F ++  K  +P+ +T T+ +     K    + L   ++++  G + +      LI+    
Sbjct: 114 FANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCK 173

Query: 227 EDQIEQVTTLVR 238
             Q      L+R
Sbjct: 174 VGQTSAALQLLR 185


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEM+         +++ +L  YSK G  +  E ++ +M + G + +    +++++
Sbjct: 288 AIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLID 347

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YG++G+ ++   + + M++     ++  YN ++++YG+ G I   E L   L   +L P
Sbjct: 348 MYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVP 407

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+T+ + AY+R   +  C+ +FE+    G   D     ++I+      Q  ++  L+
Sbjct: 408 DTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELL 467

Query: 238 RTMHKD--------MKTALPIY 251
             M K         +KT + IY
Sbjct: 468 EVMPKSGIQPDTRILKTVVEIY 489



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 91/197 (46%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V+  + + S A  +  +M++LG    + ++  L+  Y K G + +   + + M + G 
Sbjct: 311 LNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGC 370

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           K +  V N+ML++YG+ G+    E ++  ++      D  TY  LIN Y R G  E+   
Sbjct: 371 KGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIR 430

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +F+   A  LK D +     +  Y + + Y +  E+ E M  +G  PD    K ++    
Sbjct: 431 VFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYE 490

Query: 226 SEDQIEQVTTLVRTMHK 242
                E    L+R +++
Sbjct: 491 DGGMCENAAELLRKINE 507



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 94/200 (47%), Gaps = 8/200 (4%)

Query: 15  QRAPHSWN-FNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPT 73
           Q A H ++    L  P   ++ N L+L++            FS A   F ++K  G+ P 
Sbjct: 76  QTAQHWFSKMKLLGCPPDIVIYNILILEYGKRG-------NFSQAMKYFSQLKDEGLLPD 128

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
             ++  +L+A  K GN+ K    + +M ++G+KPD    + +++++G+ G+ E       
Sbjct: 129 SGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFR 188

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            ++   Y  D   YN LI+ + + G +++   +F+         D V + + +  Y++ +
Sbjct: 189 ELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKAR 248

Query: 194 LYRRCLEIFEEMIDAGCYPD 213
           +  + L + + M + G  P+
Sbjct: 249 MADQALHVLKLMKEIGLQPN 268



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 86/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A   F +MK LG  P +  + +L+  Y K GN ++     +Q+   GL PD+    +
Sbjct: 75  FQTAQHWFSKMKLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCA 134

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   ++G  +K  E L  M +     D   Y+ILI+++G+ G  E     F+ L    
Sbjct: 135 VLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSG 194

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD V + + + A+++  +  +   +F+E   + C  D      +I   +     +Q  
Sbjct: 195 YLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQAL 254

Query: 235 TLVRTMHK 242
            +++ M +
Sbjct: 255 HVLKLMKE 262



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F  MK+ G    +  +  +L  Y K G +   E ++ ++  S L PDT    +
Sbjct: 355 LQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTT 414

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y RLG+FE+   V           D     I+IN+YG+     K+  L + +P   
Sbjct: 415 LINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSG 474

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           ++PD     + +  Y    +     E+  ++ + G
Sbjct: 475 IQPDTRILKTVVEIYEDGGMCENAAELLRKINELG 509



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 44  PNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +F  +  +Y        A  V + MK +G+ P    +  +L A+ +         +  
Sbjct: 234 PVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFE 293

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +S  +       +MLN+Y + G     EE+L  M +  +  ++  Y+ LI++YG+ G
Sbjct: 294 EMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVG 353

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            +++   LF ++  +  K +++ + + L  Y +         +  E+ D+   PD  T  
Sbjct: 354 KLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYT 413

Query: 219 VLISACSSEDQIEQVTTLVRTMHKDM----KTALPIYFNLYGE 257
            LI+A +   + E+   +      D     +  + I  N+YG+
Sbjct: 414 TLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYGK 456



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 79/192 (41%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM      P +K + L++     TG     +   ++M   G  PD  + N ++  YG
Sbjct: 46  LVDEMIGKNCPPDIKFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILILEYG 105

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G F +  +  + ++      D  TY  +++   + G I+K     + +    +KPD V
Sbjct: 106 KRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQV 165

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            ++  +  + +   +      F E+  +G  PD      LI A +    ++Q T + +  
Sbjct: 166 AYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEA 225

Query: 241 HKDMKTALPIYF 252
            +      P+ F
Sbjct: 226 QRSFCLDDPVIF 237



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 71/162 (43%), Gaps = 4/162 (2%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G +P   +  +  +   R+ ++  +E ++  M   +   DI  Y ++I      G  +
Sbjct: 17  QDGFEPHFHLYVAFAHCLMRVQKWVALEILVDEMIGKNCPPDIKFYALVIKEAINTGRFQ 76

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
             +  F  +      PD+V +   +  Y ++  + + ++ F ++ D G  PD GT   ++
Sbjct: 77  TAQHWFSKMKLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVL 136

Query: 222 SACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
           SAC     I++    ++ M     K  + A  I  +++G+ G
Sbjct: 137 SACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAG 178


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 6/200 (3%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV--INQMHKSGL 105
           V+  S  FS A  + + M++ G  P + S   L+ A  K+G +     V  ++ +  SGL
Sbjct: 234 VYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGL 293

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    N++L+   R    +   +V   ME      D+ TYN +I++YGR G   + E 
Sbjct: 294 RPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAER 353

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           LF  L  K   PD VT+ S L A++R++   +  E++++M   G   D  T   +I    
Sbjct: 354 LFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYG 413

Query: 226 SEDQIEQVTTLVRTMHKDMK 245
            + Q++    L   ++KDMK
Sbjct: 414 KQGQLD----LALQLYKDMK 429



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 7/187 (3%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
            TP+L  +  + S Y     +  A A+F  M R G +PT++S  +LL A    G + +  
Sbjct: 783 RTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELY 842

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            V+ ++   G K     I  ML+ + R G   +++++ ++M+   Y   I  Y ++I + 
Sbjct: 843 VVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELL 902

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            +G  +   E +   +     K ++  W S L  Y+  + Y++ +++++ + + G  PD 
Sbjct: 903 CKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDE 962

Query: 215 GTAKVLI 221
            T   LI
Sbjct: 963 TTYNTLI 969



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 8/211 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y      ++A  +F E++  G  P   ++  LL A+++  N  K + V
Sbjct: 330 PDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEV 389

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYG 155
             QM K G   D    N+++++YG+ GQ +   ++   M+  S    D  TY +LI+  G
Sbjct: 390 YQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLG 449

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +     +   L   +    +KP + T+++ +  Y++        + F  M+ +G  PD  
Sbjct: 450 KANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNL 509

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
              V++      ++  +   L R M  D  T
Sbjct: 510 AYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 80/157 (50%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +   ++  MK  G  PT++ + +++    K   V   E ++++M ++  K +  + NSML
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +Y  +  ++K  +V   +++     D +TYN LI +Y R    E+   L Q +    L 
Sbjct: 935  KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            P + T+ S ++A+ ++K   +  ++FEE++  G   D
Sbjct: 995  PKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 89/182 (48%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              + + V EE++ +G   +  S +L+L A+++ GN+ + + + + M  +G  P   +   
Sbjct: 838  LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRM 897

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            M+ L  +  +    E +++ ME+ ++  +++ +N ++ +Y      +K   ++Q +    
Sbjct: 898  MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG 957

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            L+PD  T+ + +  Y R +       + ++M + G  P   T K LISA   +  +EQ  
Sbjct: 958  LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAE 1017

Query: 235  TL 236
             L
Sbjct: 1018 QL 1019



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 93/194 (47%), Gaps = 1/194 (0%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            + + + ++M+ LG+ P + ++  L++A+ K   + + E +  ++   GLK D    ++M+
Sbjct: 980  EGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMM 1039

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +    G   K E++L  M+       ++T ++L+  Y   G  ++ E +  +L    ++
Sbjct: 1040 KISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVE 1099

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
               + ++S + AY R K Y   +E   EM   G  PD       + A S   +  +V  L
Sbjct: 1100 LTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLL 1159

Query: 237  VRTMHKDMKTALPI 250
            ++ + +D+   LPI
Sbjct: 1160 LKAL-EDIGFDLPI 1172



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 91  AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME-KGSYAADISTYNI 149
           A+   V + +  SG +    V  SM+ +Y +LG  E   +V+   E KG + A    Y  
Sbjct: 698 AEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTD 757

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +I  YG+    +K E +  +L      PD+ TW S ++AY++   Y R   IF  M+  G
Sbjct: 758 IIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG 817

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
             P   +  +L+ A   + ++E++  +V  +     K  K+++ +  + +   G
Sbjct: 818 PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAG 871



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 90  VAKCEGVINQMHKSGLKPDTF------------VINSMLNLYGRLGQFEKMEEVLTAMEK 137
           VA   GV+ + ++  L  + F            V N+M+ +Y R G+F K +E++ AM +
Sbjct: 194 VAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQ 253

Query: 138 GSYAADISTYNILINIYGR-GGFIEKME-GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
                D+ ++N LIN   + GG    +   L   +    L+PD +T+ + L+A SR    
Sbjct: 254 RGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNL 313

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              +++FE+M    C PD  T   +IS
Sbjct: 314 DGAVKVFEDMEAHRCQPDLWTYNAMIS 340



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            DA  +  EM+       +     +L  Y+   +  K   V  ++ ++GL+PD    N+++
Sbjct: 910  DAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +Y R  + E+   ++  M        + TY  LI+ +G+   +E+ E LF+ L +K LK
Sbjct: 970  IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLK 1029

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             D   + + +          +  ++ + M +AG  P   T  +L+ + SS    ++   +
Sbjct: 1030 LDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKV 1089

Query: 237  VRTMHKDMKTAL 248
            +  + KD +  L
Sbjct: 1090 LSNL-KDTEVEL 1100



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 1/173 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ AY K     K E V+  + +SG  PD    NS+++ Y + G +E+   +   M +  
Sbjct: 758 IIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG 817

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            +  + + NIL++     G +E++  + + L     K    +    L A++R        
Sbjct: 818 PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVK 877

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIY 251
           +I+  M  AG  P     +++I       ++     +V  M + + K  L I+
Sbjct: 878 KIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIW 930



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+  EM  +GI PT++++  L+  Y+K G   + E   + M +SG KPD    + ML
Sbjct: 456 EAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           ++  R  +  K   +   M    +    + Y ++I
Sbjct: 516 DVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMI 550



 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 7/191 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++++A  VF +++  G   +      ++  Y K G       V+NQ    G     F  +
Sbjct: 696 HYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFH---FACS 752

Query: 114 SM----LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
            M    +  YG+   ++K E V+  + +     D+ T+N L++ Y + G  E+   +F +
Sbjct: 753 PMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNT 812

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +      P V +    L A            + EE+ D G      +  +++ A +    
Sbjct: 813 MMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGN 872

Query: 230 IEQVTTLVRTM 240
           I +V  +  +M
Sbjct: 873 IFEVKKIYSSM 883



 Score = 43.9 bits (102), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            S A  + + MK  GI PT+ +  LL+ +YS +GN  + E V++ +  + ++  T   +S+
Sbjct: 1049 SKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSV 1108

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
            ++ Y R   +    E L  M+K     D
Sbjct: 1109 IDAYLRSKDYNSGIERLLEMKKEGLEPD 1136


>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
          Length = 581

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 2/197 (1%)

Query: 42  HTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H P+  V +   S    DA  VF+ M+  G+ P   +   LLTA ++    A    V ++
Sbjct: 109 HVPSWLVLVLAQSARPHDAVRVFDHMRARGLAPDAHACTALLTALARARMTATARRVFDE 168

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M ++GL   T V N+ML++  + G   + E ++T M+      D  +YN +I +Y R G 
Sbjct: 169 MARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGM 228

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             +       +  + ++PD VTW S +    ++   +   ++F EM+ A   PD  T   
Sbjct: 229 GYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTT 288

Query: 220 LISACSSEDQIEQVTTL 236
           LI        +E+   L
Sbjct: 289 LIDGYCRAGNVEEAVKL 305



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 85/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           + A  VF+EM R G+  T   +  +L    K G+ A+ E ++ +M  +G+  D F  N++
Sbjct: 160 ATARRVFDEMARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTV 219

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + LY R G   +       M+K     D  T+N  I+   + G +++   LF  + A + 
Sbjct: 220 IALYCRKGMGYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQA 279

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD VT+T+ +  Y R       +++   M  AG  P   T   ++     +  +++V  
Sbjct: 280 TPDNVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHR 339

Query: 236 LVRTM 240
           L+  M
Sbjct: 340 LLHEM 344



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 3/193 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM     TP   ++  L+  Y + GNV +   +  +M  +G+ P     N++L
Sbjct: 266 EAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAIL 325

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 G  +++  +L  M+     AD  T N LIN Y + G +     + + +    L+
Sbjct: 326 RKLCEDGNMKEVHRLLHEMDGRKVQADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQ 385

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +  T+ + +  + + +      E F +M+DAG  P+      L+     ++  + V  +
Sbjct: 386 LNHFTYKALIHGFCKARELDGAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAI 445

Query: 237 VRTMHKDMKTALP 249
              +   MK  LP
Sbjct: 446 PDEL---MKRGLP 455



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 74/165 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    + M + GI P   +    +    K G V +   +  +M  +   PD     +++
Sbjct: 231 EAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLI 290

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G  E+  ++   ME       ++TYN ++      G ++++  L   +  ++++
Sbjct: 291 DGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQ 350

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            D VT  + + AY ++       ++ ++M+++G   +  T K LI
Sbjct: 351 ADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALI 395



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/159 (18%), Positives = 69/159 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             + H +  EM    +     +   L+ AY K G++     V  +M +SGL+ + F   +
Sbjct: 334 MKEVHRLLHEMDGRKVQADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKA 393

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + +  + +  +E    M    ++ + S ++ L++ + +    + +  +   L  + 
Sbjct: 394 LIHGFCKARELDGAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRG 453

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L PD   + S +    RK L  +   +F++M   G   D
Sbjct: 454 LPPDKAVYRSLIRRLCRKGLVDQAQRVFDQMQSKGLVGD 492



 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/179 (18%), Positives = 76/179 (42%), Gaps = 2/179 (1%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
            M+  G+ P + ++  +L    + GN+ +   ++++M    ++ D    N+++N Y + G
Sbjct: 308 RMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTCNTLINAYCKRG 367

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE-KMEGLFQSLPAKRLKPDVVTW 182
                 +V   M +     +  TY  LI+ + +   ++   E  FQ + A    P+   +
Sbjct: 368 DMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAFFQMVDAG-FSPNYSVF 426

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +  +  + +K      L I +E++  G  PD    + LI     +  ++Q   +   M 
Sbjct: 427 SWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQRVFDQMQ 485


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 102/210 (48%), Gaps = 8/210 (3%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           +PS  +L   +L  H           +       F+++++ G  P +     +L+ +++ 
Sbjct: 598 FPSWILLRTLVLTNHKCR--------HLRGMERAFDQLQKYGYKPDLVVINSMLSMFARN 649

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
              +K   +++ +H+ GL+P+ F  N +++LY R G+  K EEVL  ++      D+ +Y
Sbjct: 650 KMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSY 709

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           N +I  + R G +++  G+   +  K ++P +VT+ + L+ Y+  +L+    E+   MI+
Sbjct: 710 NTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIE 769

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             C P   T K+L+       + E+    V
Sbjct: 770 HNCRPSELTYKILVDGYCKAGKYEEAMDFV 799



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA-------------------------- 91
           A +V ++M+  G  P   S+ LLL  YSK GNV                           
Sbjct: 550 AESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVL 609

Query: 92  ---KC------EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
              KC      E   +Q+ K G KPD  VINSML+++ R   F K  E+L  + +     
Sbjct: 610 TNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQP 669

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           ++ TYN L+++Y R G   K E + + +     +PDVV++ + +  + RK L +  + + 
Sbjct: 670 NLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVL 729

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            EM   G  P   T    +S  +  +  ++   ++R M
Sbjct: 730 SEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFM 767



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 36/222 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN------------------------- 89
           +  A  +F +MK +G+ PT+ ++ ++L  Y K G                          
Sbjct: 231 YKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCS 290

Query: 90  --VAKC--EGVINQMHK-------SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
             ++ C  EG++++  K       +G KP T   NSML ++G+ G + +   +L  ME  
Sbjct: 291 TVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDN 350

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +   D  TYN L   Y R GF+++   +  ++ +K + P+ +T+T+ + AY +       
Sbjct: 351 NCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDA 410

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           L +F  M D GC P+  T   +++    + + E V  ++  M
Sbjct: 411 LRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 452



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L +Y++TG   +   +  +M + GL P     N ML++YG++G+ ++++ E+L
Sbjct: 215 VRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELL 274

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I+  GR G +++       L     KP  VT+ S L  + + 
Sbjct: 275 DEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKA 334

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +Y   L I +EM D  C PD  T   L +       +++   ++ TM
Sbjct: 335 GIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTM 382



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 79/186 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A     E+K  G  P   ++  +L  + K G   +   ++ +M  +   PD+   N 
Sbjct: 302 LDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNE 361

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +   Y R G  ++   V+  M       +  TY  +I+ YG+ G  +    LF  +    
Sbjct: 362 LAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLG 421

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+ S LA   +K      +++  EM   GC P+  T   +++ CS E +   V 
Sbjct: 422 CAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVN 481

Query: 235 TLVRTM 240
            ++R M
Sbjct: 482 KVLREM 487



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A ++ +EM+     P   ++  L   Y + G + +   VI+ M   G+
Sbjct: 328 LQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGV 387

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+     ++++ YG+ G+ +    + + M+    A ++ TYN ++ + G+    E +  
Sbjct: 388 MPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIK 447

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +   +      P+  TW + LA  S +  +    ++  EM + G  PD  T   LISA  
Sbjct: 448 VLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYA 507

Query: 224 -CSSE 227
            C SE
Sbjct: 508 RCGSE 512



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 69/156 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   V  EMK  G  P   +   +L   S+ G       V+ +M   G +PD    N+++
Sbjct: 444 DVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLI 503

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G      ++   M K  +   ++TYN L+N   R G  +  E + Q +  K  K
Sbjct: 504 SAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFK 563

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           P+  +++  L  YS+    +   ++ +E+ D   +P
Sbjct: 564 PNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFP 599



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 6/189 (3%)

Query: 56  SDAHAVFEEMKRLGITP---TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
            DA  +F  MK LG  P   T  S + +L   S+T +V K   V+ +M  +G  P+    
Sbjct: 408 DDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIK---VLCEMKLNGCAPNRATW 464

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N+ML +    G+   + +VL  M+   +  D  T+N LI+ Y R G       ++  +  
Sbjct: 465 NTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVK 524

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
               P V T+ + L A +R+  ++    + ++M   G  P+  +  +L+   S    ++ 
Sbjct: 525 SGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKG 584

Query: 233 VTTLVRTMH 241
           +  + + ++
Sbjct: 585 IEKVEKEIY 593



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 89/194 (45%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            ++ + +  +  AV + M   G+ P   ++  ++ AY K G       + + M   G  P
Sbjct: 365 TYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAP 424

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           + +  NS+L + G+  + E + +VL  M+    A + +T+N ++ +    G    +  + 
Sbjct: 425 NVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVL 484

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +     +PD  T+ + ++AY+R        +++ EM+ +G  P   T   L++A +  
Sbjct: 485 REMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARR 544

Query: 228 DQIEQVTTLVRTMH 241
              +   ++++ M 
Sbjct: 545 GDWKAAESVIQDMR 558



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 1/130 (0%)

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           L+ D  V+  M+ + GR  Q     ++   +    Y+ D+  Y  +++ Y R G  ++  
Sbjct: 176 LRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAI 235

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            LF  +    L P +VT+   L  Y +  + + R LE+ +EM   G   D  T   +ISA
Sbjct: 236 DLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISA 295

Query: 224 CSSEDQIEQV 233
           C  E  +++ 
Sbjct: 296 CGREGMLDEA 305


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 6/200 (3%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV--INQMHKSGL 105
           V+  S  FS A  + + M++ G  P + S   L+ A  K+G +     V  ++ +  SGL
Sbjct: 234 VYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGL 293

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    N++L+   R    +   +V   ME      D+ TYN +I++YGR G   + E 
Sbjct: 294 RPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAER 353

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           LF  L  K   PD VT+ S L A++R++   +  E++++M   G   D  T   +I    
Sbjct: 354 LFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYG 413

Query: 226 SEDQIEQVTTLVRTMHKDMK 245
            + Q++    L   ++KDMK
Sbjct: 414 KQGQLD----LALQLYKDMK 429



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 7/187 (3%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
            TP+L  +  + S Y     +  A A+F  M R G +PT++S  +LL A    G + +  
Sbjct: 783 RTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELY 842

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            V+ ++   G K     I  ML+ + R G   +++++ ++M+   Y   I  Y ++I + 
Sbjct: 843 VVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELL 902

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            +G  +   E +   +     K ++  W S L  Y+  + Y++ +++++ + + G  PD 
Sbjct: 903 CKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDE 962

Query: 215 GTAKVLI 221
            T   LI
Sbjct: 963 TTYNTLI 969



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 8/211 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y      ++A  +F E++  G  P   ++  LL A+++  N  K + V
Sbjct: 330 PDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEV 389

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYG 155
             QM K G   D    N+++++YG+ GQ +   ++   M+  S    D  TY +LI+  G
Sbjct: 390 YQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLG 449

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +     +   L   +    +KP + T+++ +  Y++        + F  M+ +G  PD  
Sbjct: 450 KANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNL 509

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
              V++      ++  +   L R M  D  T
Sbjct: 510 AYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 80/157 (50%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +   ++  MK  G  PT++ + +++    K   V   E ++++M ++  K +  + NSML
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +Y  +  ++K  +V   +++     D +TYN LI +Y R    E+   L Q +    L 
Sbjct: 935  KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            P + T+ S ++A+ ++K   +  ++FEE++  G   D
Sbjct: 995  PKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 89/182 (48%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              + + V EE++ +G   +  S +L+L A+++ GN+ + + + + M  +G  P   +   
Sbjct: 838  LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRM 897

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            M+ L  +  +    E +++ ME+ ++  +++ +N ++ +Y      +K   ++Q +    
Sbjct: 898  MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG 957

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            L+PD  T+ + +  Y R +       + ++M + G  P   T K LISA   +  +EQ  
Sbjct: 958  LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAE 1017

Query: 235  TL 236
             L
Sbjct: 1018 QL 1019



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 97/195 (49%), Gaps = 3/195 (1%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            + + + ++M+ LG+ P + ++  L++A+ K   + + E +  ++   GLK D    ++M+
Sbjct: 980  EGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMM 1039

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +    G   K E++L  M+       ++T ++L+  Y   G  ++ E +  +L    ++
Sbjct: 1040 KISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVE 1099

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS-SEDQIEQVTT 235
               + ++S + AY R K Y   +E   EM   G  PD       + A S S+++IE V  
Sbjct: 1100 LTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIE-VML 1158

Query: 236  LVRTMHKDMKTALPI 250
            L++ + +D+   LPI
Sbjct: 1159 LLKAL-EDIGFDLPI 1172



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 91  AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME-KGSYAADISTYNI 149
           A+   V + +  SG +    V  SM+ +Y +LG  E   +V+   E KG + A    Y  
Sbjct: 698 AEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTD 757

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +I  YG+    +K E +  +L      PD+ TW S ++AY++   Y R   IF  M+  G
Sbjct: 758 IIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG 817

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
             P   +  +L+ A   + ++E++  +V  +     K  K+++ +  + +   G
Sbjct: 818 PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAG 871



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 90  VAKCEGVINQMHKSGLKPDTF------------VINSMLNLYGRLGQFEKMEEVLTAMEK 137
           VA   GV+ + ++  L  + F            V N+M+ +Y R G+F K +E++ AM +
Sbjct: 194 VAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQ 253

Query: 138 GSYAADISTYNILINIYGR-GGFIEKME-GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
                D+ ++N LIN   + GG    +   L   +    L+PD +T+ + L+A SR    
Sbjct: 254 RGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNL 313

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              +++FE+M    C PD  T   +IS
Sbjct: 314 DGAVKVFEDMEAHRCQPDLWTYNAMIS 340



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            DA  +  EM+       +     +L  Y+   +  K   V  ++ ++GL+PD    N+++
Sbjct: 910  DAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +Y R  + E+   ++  M        + TY  LI+ +G+   +E+ E LF+ L +K LK
Sbjct: 970  IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLK 1029

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             D   + + +          +  ++ + M +AG  P   T  +L+ + SS    ++   +
Sbjct: 1030 LDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKV 1089

Query: 237  VRTMHKDMKTAL 248
            +  + KD +  L
Sbjct: 1090 LSNL-KDTEVEL 1100



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 1/173 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ AY K     K E V+  + +SG  PD    NS+++ Y + G +E+   +   M +  
Sbjct: 758 IIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG 817

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            +  + + NIL++     G +E++  + + L     K    +    L A++R        
Sbjct: 818 PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVK 877

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIY 251
           +I+  M  AG  P     +++I       ++     +V  M + + K  L I+
Sbjct: 878 KIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIW 930



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+  EM  +GI PT++++  L+  Y+K G   + E   + M +SG KPD    + ML
Sbjct: 456 EAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           ++  R  +  K   +   M    +    + Y ++I
Sbjct: 516 DVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMI 550



 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 7/191 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++++A  VF +++  G   +      ++  Y K G       V+NQ    G     F  +
Sbjct: 696 HYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFH---FACS 752

Query: 114 SM----LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
            M    +  YG+   ++K E V+  + +     D+ T+N L++ Y + G  E+   +F +
Sbjct: 753 PMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNT 812

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +      P V +    L A            + EE+ D G      +  +++ A +    
Sbjct: 813 MMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGN 872

Query: 230 IEQVTTLVRTM 240
           I +V  +  +M
Sbjct: 873 IFEVKKIYSSM 883



 Score = 43.9 bits (102), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            S A  + + MK  GI PT+ +  LL+ +YS +GN  + E V++ +  + ++  T   +S+
Sbjct: 1049 SKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSV 1108

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
            ++ Y R   +    E L  M+K     D
Sbjct: 1109 IDAYLRSKDYNSGIERLLEMKKEGLEPD 1136


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 5/205 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF+EM+R  I P + +  +L+ +  K G + +   V + M   G  PD F  N 
Sbjct: 305 WKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 364

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y   G    M ++   M     A  I T+N+LI  Y   G ++K   +F  +    
Sbjct: 365 MLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHG 424

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP+V+T+T+ +AA  R       +E F +MID G  PD      LI    +   + +  
Sbjct: 425 VKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484

Query: 235 TLVRT-----MHKDMKTALPIYFNL 254
            L+       MH D+     I  NL
Sbjct: 485 ELISEIMNNGMHLDIVLFSSIINNL 509



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 88/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM + GI P   ++  ++ A  K   + K E  + QM   G+ P+ +  N+++ 
Sbjct: 238 ACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIY 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ+++   V   M + S   D+ T+N+L+    + G I++   +F ++  K   P
Sbjct: 298 GYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNP 357

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++   L  Y+ K       ++F+ M+  G  P   T  VLI A ++   +++   + 
Sbjct: 358 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIF 417

Query: 238 RTMH 241
             M 
Sbjct: 418 NEMR 421



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   +M   G+ P   ++  L+  YS TG   +   V  +M +  + PD    N ++ 
Sbjct: 273 AEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMG 332

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  +V   M       D+ +YNI++N Y   G +  M  LF  +    + P
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            + T+   + AY+   +  + + IF EM D G  P+  T   +I+A
Sbjct: 393 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAA 438



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+  G+ P + ++  ++ A  + G +       NQM   G+ PD +  + ++ 
Sbjct: 413 AMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQ 472

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G   K +E+++ +       DI  ++ +IN   + G +   + +F       L P
Sbjct: 473 GFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             V ++  +  Y       + L +F+ M+ AG  P+      L++      +I++  +L 
Sbjct: 533 TAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLF 592

Query: 238 RTM-HKDMKTALPIY 251
           R M  K +K +  +Y
Sbjct: 593 REMLQKGIKPSTILY 607



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 35/191 (18%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M   GI P    +  L+  Y K G + +   +  +M + G+KP T + N +++
Sbjct: 553 ALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIID 612

Query: 118 LYGRLG-------QFEKMEEVLTAMEKGSYA----------------------------A 142
                G       +F +M E   AM K +Y+                             
Sbjct: 613 GLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI 672

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           DI T N +I    +   +E+ + LF S+    L P VVT++  +    ++ L     ++F
Sbjct: 673 DIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMF 732

Query: 203 EEMIDAGCYPD 213
             M +AGC PD
Sbjct: 733 SSMQNAGCEPD 743



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 99/232 (42%), Gaps = 15/232 (6%)

Query: 38  LLLQHTPNLF----VFIFSIYF---------SDAHAVFEEMKRLG--ITPTMKSHMLLLT 82
           +LL  TP L     VF +SI             A  +   M   G   +P + ++  ++ 
Sbjct: 168 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVID 227

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
            + K G+V K   +  +M + G+ PD    +S+++   +    +K E  L  M       
Sbjct: 228 GFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLP 287

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           +  TYN LI  Y   G  ++   +F+ +  + + PDVVT+   + +  +    +   ++F
Sbjct: 288 NNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVF 347

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           + M   G  PD  +  ++++  +++  +  +T L   M  D    +   FN+
Sbjct: 348 DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNV 399



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 89/220 (40%), Gaps = 35/220 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+    +G+ PT   + +L+  Y   G + K   V + M  +G++P+  V  +++
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLV 576

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN------------------------ 152
           N Y ++G+ ++   +   M +         YNI+I+                        
Sbjct: 577 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIA 636

Query: 153 -------IYGRGGF----IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
                  I  RG F     ++   LF+ L A  +K D++T  + +A   + +      ++
Sbjct: 637 MNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDL 696

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           F  +  +G  P   T  ++I+    E  +E+   +  +M 
Sbjct: 697 FASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQ 736



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 48/228 (21%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY---------- 119
           ++PT  ++ +L+   ++            Q+ ++GL+ D  + N +L  +          
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 120 -----------------------------GRLGQFEKMEEVLTAMEKGSY--AADISTYN 148
                                        G+ GQ    +++L  M +G    + D+  YN
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ---ADDLLRMMAEGGAVCSPDVVAYN 223

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            +I+ + + G + K   LF+ +  + + PD VT++S + A  + +   +      +M++ 
Sbjct: 224 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNK 283

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP--IYFNL 254
           G  P+  T   LI   SS  Q ++   + + M +  ++ LP  + FN+
Sbjct: 284 GVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR--QSILPDVVTFNM 329



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F EM   GI     ++ ++L    K     +   +  ++    +K D   +N+M+ 
Sbjct: 623 AKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIA 682

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + E+ +++  ++ +      + TY+I+I    + G +E+ E +F S+     +P
Sbjct: 683 GMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 742

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           D     SRL  +  ++L ++      E++ AG Y
Sbjct: 743 D-----SRLLNHVVRELLKK-----NEIVRAGAY 766


>gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
          Length = 466

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 99/206 (48%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  EM  LGI     ++  L+  Y + G +     VI +M + G  PD+FV + ++ 
Sbjct: 131 ADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIG 190

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y   G ++K  E++  + +   + D   YN +I+ +G+ G + +   +F+ +  + +KP
Sbjct: 191 VYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKP 250

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++TW S +  + +     + LE+F +M + G YPD      +IS    + + + +    
Sbjct: 251 DIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNF 310

Query: 238 RTM----HKDMKTALPIYFNLYGEKG 259
             M    H+       I  ++YG+ G
Sbjct: 311 ENMKCRGHQRSGAIYAILVDIYGQYG 336



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M+ LG + ++ S+  ++ A    G   + E +  +M   GLK D  V N ML 
Sbjct: 61  AMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLR 120

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G  E  ++VL  M+      + +TY  L++ YGR G +  +  +   +      P
Sbjct: 121 SCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGP 180

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D   ++  +  Y    ++++ +EI  E+ + G   D
Sbjct: 181 DSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLD 216



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 87/169 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  VFE+M+  G+ P + +   L+  + K G+V K   + ++M + GL PD  +  +
Sbjct: 233 LSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFIT 292

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G  G+++ ++     M+   +    + Y IL++IYG+ G  +  E    +L ++ 
Sbjct: 293 IISRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEG 352

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P    +     AY+++ L  + +++ + M   G  P+     +LI+A
Sbjct: 353 IQPSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINA 401



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +D  AV  EM R G  P    +  ++  Y   G   K   ++ ++ + G+  D  + NS
Sbjct: 163 LNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNS 222

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ G+  +  EV   M++     DI T+N LI  + + G + K   LF  +  + 
Sbjct: 223 IIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEG 282

Query: 175 LKPD---VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           L PD    +T  SRL    +  + +R    FE M   G    G    +L+ 
Sbjct: 283 LYPDPKIFITIISRLGEQGKWDVIKRN---FENMKCRGHQRSGAIYAILVD 330



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 24/162 (14%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           FE MK  G   +   + +L+  Y + G     E  I+ +   G++P   +   + N Y +
Sbjct: 310 FENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQ 369

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  E+  +VL  ME      ++   N+LIN +G  G    +E L      K   P    
Sbjct: 370 QGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAG--RHLEALSVYHHIKDTVP---- 423

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
                             EI+EEM  AGC PD    ++L +A
Sbjct: 424 ------------------EIYEEMESAGCTPDRKAREMLQTA 447


>gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 99/206 (48%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  EM  LGI     ++  L+  Y + G +     VI +M + G  PD+FV + ++ 
Sbjct: 112 ADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIG 171

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y   G ++K  E++  + +   + D   YN +I+ +G+ G + +   +F+ +  + +KP
Sbjct: 172 VYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKP 231

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++TW S +  + +     + LE+F +M + G YPD      +IS    + + + +    
Sbjct: 232 DIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNF 291

Query: 238 RTM----HKDMKTALPIYFNLYGEKG 259
             M    H+       I  ++YG+ G
Sbjct: 292 ENMKCRGHQRSGAIYAILVDIYGQYG 317



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           FE MK  G   +   + +L+  Y + G     E  I+ +   G++P   +   + N Y +
Sbjct: 291 FENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQ 350

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  E+  +VL  ME      ++   N+LIN +G  G   +   ++  +    + PDVVT
Sbjct: 351 QGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIKDTGISPDVVT 410

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +++ + A  R + + +  EI+EEM  AGC PD    ++L +A
Sbjct: 411 YSTLMKACIRARKFDKVPEIYEEMESAGCTPDRKAREMLQTA 452



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  VFE+M+  G+ P + +   L+  + K G+V K   + ++M + GL PD  +  +
Sbjct: 214 LSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFIT 273

Query: 115 -----------------------------------MLNLYGRLGQFEKMEEVLTAMEKGS 139
                                              ++++YG+ G+F+  EE ++A++   
Sbjct: 274 IISRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEG 333

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                S + +L N Y + G  E+   + Q +  + ++P+++     + A+     +   L
Sbjct: 334 IQPSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEAL 393

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            ++  + D G  PD  T   L+ AC    + ++V  +   M 
Sbjct: 394 SVYHHIKDTGISPDVVTYSTLMKACIRARKFDKVPEIYEEME 435



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M+ LG + ++ S+  ++ A    G   + E +  +M   GLK D  V N ML 
Sbjct: 42  AMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLR 101

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G  E  ++VL  M+      + +TY  L++ YGR G +  +  +   +      P
Sbjct: 102 SCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGP 161

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D   ++  +  Y    ++++ +EI  E+ + G   D
Sbjct: 162 DSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLD 197



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +D  AV  EM R G  P    +  ++  Y   G   K   ++ ++ + G+  D  + NS
Sbjct: 144 LNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNS 203

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ G+  +  EV   M++     DI T+N LI  + + G + K   LF  +  + 
Sbjct: 204 IIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEG 263

Query: 175 LKPD---VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           L PD    +T  SRL    +  + +R    FE M   G    G    +L+ 
Sbjct: 264 LYPDPKIFITIISRLGEQGKWDVIKRN---FENMKCRGHQRSGAIYAILVD 311


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 93/186 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  EM R G++P + ++  L+ +  K GN+ +     +QMH  GL P+     +
Sbjct: 104 FHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTT 163

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + + G  ++   VL  M +  +   I TYN LIN +   G +E+  GL Q +  K 
Sbjct: 164 IINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG 223

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDVV++++ ++ ++R +   R  ++  EMI     PD  T   LI     + ++ +  
Sbjct: 224 VLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEAC 283

Query: 235 TLVRTM 240
            + + M
Sbjct: 284 DMFQEM 289



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F+EM+R G  P + ++  ++  Y K     +  G +  M   GL+P+    N ++N   R
Sbjct: 6   FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCR 65

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+ ++  EVL  M +  Y  D  TYN L+N Y + G   +   L   +    L P+VVT
Sbjct: 66  DGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVT 125

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +TS + +  +     R +E F++M   G  P+  T   +I+  + +  +++   ++  M 
Sbjct: 126 YTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMT 185

Query: 242 K 242
           +
Sbjct: 186 R 186



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 93/199 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A+ V  EM R G  P++ ++  L+  +   G + +  G++  M   G+ PD    ++
Sbjct: 174 LDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYST 233

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + R  + ++  ++   M   S   D  TY+ LI        + +   +FQ +   +
Sbjct: 234 IISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIK 293

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD  T+T+ + AY ++    + L + +EMI  G  PD  T  VLI+  + + + ++  
Sbjct: 294 LPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEAR 353

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  +  D      + +N
Sbjct: 354 RLLLKLFYDDSIPSAVTYN 372



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 87/179 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F++M   G+ P  +++  ++  +++ G + +   V+N+M +SG  P     N+++N
Sbjct: 142 AMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALIN 201

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  LG+ E+   +L  M       D+ +Y+ +I+ + R   +++   +   +  K + P
Sbjct: 202 GHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLP 261

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           D VT++S +     ++      ++F+EM+     PD  T   LI+A   E  + +   L
Sbjct: 262 DAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHL 320



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 82/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A      M   G+ P + +  +++    + G + +   V+ +M + G  PD    N++
Sbjct: 35  DEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTL 94

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y + G F +   +   M +   + ++ TY  LIN   + G + +    F  +  + L
Sbjct: 95  VNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGL 154

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+  T+T+ +  ++++ L      +  EM  +G  P   T   LI+      ++E+   
Sbjct: 155 CPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIG 214

Query: 236 LVRTM 240
           L++ M
Sbjct: 215 LLQDM 219



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 79/196 (40%), Gaps = 7/196 (3%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL  F   I          +   V  EM R G  P   ++  L+  Y K GN  +   +
Sbjct: 51  PNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVL 110

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M ++GL P+     S++N   + G   +  E    M       +  TY  +IN + +
Sbjct: 111 HAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQ 170

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +++   +   +      P +VT+ + +  +         + + ++M+  G  PD  +
Sbjct: 171 QGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVS 230

Query: 217 AKVLISACSSEDQIEQ 232
              +IS  +   ++++
Sbjct: 231 YSTIISGFARNQELDR 246



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 82/188 (43%), Gaps = 15/188 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +F+EM  + + P   ++  L+ AY K G++ K   + ++M + G  PD    N 
Sbjct: 279 LTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNV 338

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI----NI-----------YGRGGF 159
           ++N   +  + ++   +L  +          TYN LI    NI           +   G 
Sbjct: 339 LINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGL 398

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++ + +F+S+  K  KP+   +   +  + R     +  ++++EM+     P   T   
Sbjct: 399 MDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLA 458

Query: 220 LISACSSE 227
           L+ A  +E
Sbjct: 459 LVKALFTE 466


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   GI   +  + ++ +A  K   V+    + ++M  SG+ PD F  N M++ YGR+G 
Sbjct: 419 MPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGL 478

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +K   +   ME  S   D+ TYN LIN  G+ G +++   LF+ +  K   PDV T+++
Sbjct: 479 VDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYST 538

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
            +  + +         +F+EMI  GC P+  T  +L+       +  +      TM +  
Sbjct: 539 LIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQG 598

Query: 245 KTALPIYFNL 254
            T   I +++
Sbjct: 599 LTPDSITYSI 608



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F++MK  GI P + ++ +++++Y + G V K  G+  +M  S  KPD    N+++N  G
Sbjct: 450 LFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLG 509

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  ++   +   M++  Y  D+ TY+ LI  +G+   ++    LF  + A+   P++V
Sbjct: 510 KNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIV 569

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           T+   L    R+       + +E M   G  PD  T  +L
Sbjct: 570 TYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSIL 609



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S + S+AH VF  M     +    + + +L     +G   +   +++ M + G+  D  +
Sbjct: 371 SGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTDIGM 430

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N + +  G+L Q   +  +   M+    A D+ TYNI+I+ YGR G ++K  GLF+ + 
Sbjct: 431 YNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEME 490

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           A   KPDV+T+ + +    +         +F+EM + G  PD  T   LI      ++++
Sbjct: 491 ASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVD 550

Query: 232 QVTTLVRTM 240
              +L   M
Sbjct: 551 MACSLFDEM 559



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 86/176 (48%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E  K+ G+     ++  ++ A+ ++  V+K   V  +MH+ G K D F  N +L+   +
Sbjct: 174 LELAKKWGLRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAK 233

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++  +V   M++     D  TY ILI + G+ G   K    F  + ++    +++ 
Sbjct: 234 AGMVDQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIA 293

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + + + A  + K+  + + +  +MI++ C P+  T  + +   ++E Q+ ++  ++
Sbjct: 294 YNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEVL 349



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 6/166 (3%)

Query: 80  LLTAYSKTGNVAKCEGVINQM---HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
           L+ +  K+G+ ++   V  +M   H+SG + D F+  SML +    G+  +  ++L  M 
Sbjct: 364 LVKSLCKSGHASEAHNVFCRMWNSHESGDR-DAFI--SMLEVLCNSGKTLEAIDLLHMMP 420

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           +     DI  YN++ +  G+   +  +  LF  + A  + PD+ T+   +++Y R  L  
Sbjct: 421 EKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVD 480

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +   +FEEM  + C PD  T   LI+       +++   L + M +
Sbjct: 481 KASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQE 526



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 3/184 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  +M+R G+   + +  LL+        VA+C   +    K GL+ + +    ++
Sbjct: 137 EALRLVAQMERDGVAGNISTVNLLVGMGGGGVEVARC---LELAKKWGLRLNGYTYKCIV 193

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R  +  K  EV   M +  Y  DI  YN+L++   + G +++   +F+ +  K   
Sbjct: 194 QAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCV 253

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+T  +    +     + L  F+EM+  GC  +      +I A      +++V  +
Sbjct: 254 PDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFV 313

Query: 237 VRTM 240
           +  M
Sbjct: 314 LSKM 317



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 63/148 (42%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S    V+EEM R G    + ++ +LL A +K G V +   V   M +    PD +    +
Sbjct: 203 SKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDAYTYTIL 262

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + + G+ GQ  K       M     A ++  YN +I   G+   ++K+  +   +     
Sbjct: 263 IRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDC 322

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +P+  T++  L   + +    R  E+ +
Sbjct: 323 QPNQFTYSLTLDILATEGQLHRLNEVLD 350



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +AH +F+EM+  G  P + ++  L+  + K+  V     + ++M   G  P+    N 
Sbjct: 514 LDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNI 573

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   R G+  +  +    M++     D  TY+IL          E++E   Q     R
Sbjct: 574 LLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSIL----------ERLESRSQRTARIR 623

Query: 175 LKPDVVTW 182
               V +W
Sbjct: 624 KPSRVTSW 631



 Score = 40.8 bits (94), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 36/216 (16%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           + F+EM   G    + ++  ++ A  K   V K   V+++M +S  +P+ F  +  L++ 
Sbjct: 277 SFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDIL 336

Query: 120 GRLGQFEKMEEVLT----------------AMEKGSYAADISTYNILINIYG------RG 157
              GQ  ++ EVL                 ++ K  +A++   +N+   ++       R 
Sbjct: 337 ATEGQLHRLNEVLDICDRYLNKSIYSYLVKSLCKSGHASE--AHNVFCRMWNSHESGDRD 394

Query: 158 GFIEKMEGLFQS------------LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            FI  +E L  S            +P K +  D+  +    +A  + K       +F++M
Sbjct: 395 AFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKM 454

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             +G  PD  T  ++IS+      +++ + L   M 
Sbjct: 455 KASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEME 490


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 92/186 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F E+KR G +P + +   ++  Y +   V K   ++N M +SG  P     NS++
Sbjct: 437 EAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLM 496

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++ +   FE+ EEVL  +       DI +YN +I  Y R G +++   +F  +    L 
Sbjct: 497 YMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLI 556

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV+T+ + +A+Y+   ++   +++   MI  GC P+  T   +I      ++ +     
Sbjct: 557 PDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKF 616

Query: 237 VRTMHK 242
           + ++H+
Sbjct: 617 ISSLHE 622



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 3/187 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V+  S    +A  V  EM+  G +P++ ++  L++AY++ G + +   + NQM + G+
Sbjct: 146 LDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGI 205

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           K D F   +ML+ + R G+ E    V   M       +I T+N LI ++G  G   +M  
Sbjct: 206 KLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMK 265

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +F+ +      PD+VTW + LA + +  +      +F+EM   G  P+  T   LISA  
Sbjct: 266 VFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYS 325

Query: 224 -CSSEDQ 229
            C S DQ
Sbjct: 326 RCGSFDQ 332



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 80/162 (49%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +FE MK  GI P   ++  L+T   +     +   V   M   G  PD    N++L++Y
Sbjct: 90  GLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVY 149

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+  + ++  EVL  ME    +  I TYN LI+ Y R G +E+   L   +  + +K DV
Sbjct: 150 GKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDV 209

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            T+T+ L+ + R       + +FEEM  AGC P+  T   LI
Sbjct: 210 FTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALI 251



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 95/190 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  +M   GI   + ++  +L+ + +TG       V  +M  +G KP+    N+
Sbjct: 190 LEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNA 249

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ ++G  G+F +M +V   ++      DI T+N L+ ++G+ G   ++ G+F+ +    
Sbjct: 250 LIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVG 309

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+  T+ + ++AYSR   + + + +++ M+D G  PD  T   +++A +     EQ  
Sbjct: 310 FVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSE 369

Query: 235 TLVRTMHKDM 244
            ++  M   M
Sbjct: 370 KILAEMQDGM 379



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 1/186 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A ++   + + G  P + ++  L+TA    G   +   V  +M + G KP     N +
Sbjct: 15  SVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVI 74

Query: 116 LNLYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           LN+YG++G  + K+  +   M+      D  TYN LI    RG   E+   +F+ + +  
Sbjct: 75  LNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMG 134

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD VT+ + L  Y + +  +  +E+  EM   GC P   T   LISA + +  +E+  
Sbjct: 135 FVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAM 194

Query: 235 TLVRTM 240
            L   M
Sbjct: 195 ELKNQM 200



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 91/183 (49%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+ EE+    I P       L+   SK   + + E    ++ + G  PD   +N+M+ +Y
Sbjct: 405 ALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIY 464

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR     K  E+L  M++  +   ++TYN L+ ++ +    E+ E + + + AK +KPD+
Sbjct: 465 GRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDI 524

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +++ + + AY R    +    IF EM ++G  PD  T    +++ +++   E+   +V  
Sbjct: 525 ISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCY 584

Query: 240 MHK 242
           M K
Sbjct: 585 MIK 587



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 1/170 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           + +A  VF++M+  G  PT+ ++ ++L  Y K G    K  G+   M  +G+ PD +  N
Sbjct: 49  YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYN 108

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++    R   +E+   V   M+   +  D  TYN L+++YG+   I++   + + +   
Sbjct: 109 TLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVN 168

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              P +VT+ S ++AY+R  L    +E+  +M++ G   D  T   ++S 
Sbjct: 169 GCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSG 218



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 1/164 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++    K G V+    ++N +HK G +PD +   S++      G++ +   V   ME+ 
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 139 SYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                + TYN+++N+YG+ G    K+ GLF+ +    + PD  T+ + +    R  LY  
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
              +FE+M   G  PD  T   L+       +I++   ++R M 
Sbjct: 123 AAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREME 166



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 97/206 (47%)

Query: 35  INFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           I   +  +T  L  F+ +     A  VFEEM+  G  P + +   L+  +   G  A+  
Sbjct: 205 IKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMM 264

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            V  ++      PD    N++L ++G+ G   ++  V   M++  +  +  TYN LI+ Y
Sbjct: 265 KVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAY 324

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            R G  ++   +++ +    + PD+ T+ + LAA +R  L+ +  +I  EM D  C P+ 
Sbjct: 325 SRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNE 384

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
            T   L+ A ++  +I ++  L   +
Sbjct: 385 LTHCSLLHAYANGKEIGRMLALAEEI 410



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 79/174 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++   VFEE+K     P + +   LL  + + G  ++  GV  +M + G  P+    N+
Sbjct: 260 FAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNT 319

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++   +   M       D+STYN ++    RGG  E+ E +   +    
Sbjct: 320 LISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGM 379

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            KP+ +T  S L AY+  K   R L + EE+      P     K L+   S  D
Sbjct: 380 CKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCD 433



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 82/167 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+   VF+EMKR+G  P   ++  L++AYS+ G+  +   +  +M  +G+ PD    N++
Sbjct: 296 SEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAV 355

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L    R G +E+ E++L  M+ G    +  T+  L++ Y  G  I +M  L + + +  +
Sbjct: 356 LAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVI 415

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +P  V   + +   S+  L       F E+   G  PD  T   +I+
Sbjct: 416 EPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIA 462



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  +  V +E+   GI P + S+  ++ AY + G + +   + ++M +SGL PD    N+
Sbjct: 505 FERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNT 564

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            +  Y     FE+  +V+  M K     + +TYN +I+ Y
Sbjct: 565 FVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGY 604


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 7/212 (3%)

Query: 36  NFLLLQHTPNLFVFIFSIYF------SD-AHAVFEEMKRLGITPTMKSHMLLLTAYSKTG 88
           N   L   P  + +I  I F      SD A   FE+MK  GI P + +    L + ++ G
Sbjct: 429 NMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMG 488

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
            + + + + N++  +GL PD+   N M+  Y + GQ ++  E+L+ M +     DI   N
Sbjct: 489 RLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVIN 548

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            LIN   + G +++   +F  L   +L P VVT+ + +A   ++   +R +E+F  M   
Sbjct: 549 SLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGN 608

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           GC P+  T   ++      D+++    ++  M
Sbjct: 609 GCPPNTITFNTILDCLCKNDEVDLALKMLYKM 640



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 86/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  ++  M   G+ P++K+   L+ A  K  +    + ++ +M   GLKP+ +     +
Sbjct: 212 EALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICI 271

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            + GR G+ ++   ++  ME      D+ TY +LI+     G ++    LF  + A   K
Sbjct: 272 RVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHK 331

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+ + L  +S      R  E + EM   G  PD  T  +L++A      I++   L
Sbjct: 332 PDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHL 391

Query: 237 VRTMHK 242
           +  M K
Sbjct: 392 LDVMRK 397



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 7/206 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+     S+Y         +A  +F  +K  G+ P   ++ +++  YSK G V +   +
Sbjct: 472 PNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIEL 531

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++ M ++  +PD  VINS++N   + G+ ++  ++   ++    A  + TYN LI   G+
Sbjct: 532 LSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGK 591

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +++   LF S+      P+ +T+ + L    +       L++  +M    C PD  T
Sbjct: 592 EGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLT 651

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK 242
              +I     E ++     L   M K
Sbjct: 652 FNTIIHGLVIEKRVSDAIWLFHQMKK 677



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 2/201 (0%)

Query: 58  AHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A +VF    K LG+ PT++S+  L+  +    N      +  +M  +G  PD F  N +L
Sbjct: 773 AQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLL 832

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +G+ G+  ++ E+   M   S   +  T+NI+I    +   ++K   LF  L +    
Sbjct: 833 DAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFS 892

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P   T+   L    +        E+FEEM+D GC P+     +LI+       +     L
Sbjct: 893 PTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACEL 952

Query: 237 VRTMHKD-MKTALPIYFNLYG 256
            + M ++ ++  L  Y +L G
Sbjct: 953 FKRMVREGIRPDLKSYTSLVG 973



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +F+ M R GI P +KS+  L+    + G V        ++ ++GL  D+   N M++
Sbjct: 949  ACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMID 1008

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              GR  + E+   +   M+      D+ TYN LI   G  G +E+   L++ L    L+P
Sbjct: 1009 GLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEP 1068

Query: 178  DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            +V T+ + +  YS          +++ M+  GC P+ GT
Sbjct: 1069 NVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGT 1107



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 94/210 (44%), Gaps = 7/210 (3%)

Query: 41  QHTPNLFVFIFSI-YFSDAHAV------FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
            H P+   +I  +  FSD   +      + EM+  G  P + +  +L+ A  K GN+ + 
Sbjct: 329 SHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEA 388

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             +++ M K G+ P+    N++++   R+ + +   ++   ME         TY + I+ 
Sbjct: 389 FHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDF 448

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+ G  +K    F+ +  + + P++V   + L + +     R    IF  +   G  PD
Sbjct: 449 YGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPD 508

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             T  +++   S   Q+++   L+  M ++
Sbjct: 509 SVTYNMMMKCYSKAGQVDEAIELLSDMSEN 538



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 100/240 (41%), Gaps = 36/240 (15%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML- 116
            A  +F EMK  G  P + ++ LLL A+ K+G + +   +  QM  S  KP+T   N ++ 
Sbjct: 809  AWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIA 868

Query: 117  NL---------------------------YGRL-------GQFEKMEEVLTAMEKGSYAA 142
            NL                           YG L       G+ E+ +E+   M       
Sbjct: 869  NLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRP 928

Query: 143  DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
            + + YNILIN +G+ G +     LF+ +  + ++PD+ ++TS +            L  F
Sbjct: 929  NNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYF 988

Query: 203  EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KDMKTALPIYFNLYGEKGVA 261
            E++   G Y D     ++I       +IE+  TL   M  + +   L  Y +L    GVA
Sbjct: 989  EKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVA 1048



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              +A  +FEEM   G  P    + +L+  + KTG+V     +  +M + G++PD   + S
Sbjct: 911  LEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPD---LKS 967

Query: 115  MLNLYGRLGQFEKMEEVLTAMEK----GSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
              +L G L +  ++++ L   EK    G Y   I+ YN++I+  GR   IE+   L+  +
Sbjct: 968  YTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIA-YNLMIDGLGRSHRIEEALTLYDEM 1026

Query: 171  PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
             ++ + PD+ T+ S +       +  +  +++EE+   G  P+  T   LI   S
Sbjct: 1027 QSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYS 1081



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 89/204 (43%), Gaps = 4/204 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++ EEM+ LG+ P + ++ + +    + G + +   ++ +M   G  PD      +++  
Sbjct: 250 SLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDAL 309

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              G+ +   E+   M+  S+  D  TY  +++ +   G + +++  +  + A    PDV
Sbjct: 310 CTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDV 369

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +T+T  + A  +         + + M   G  P+  T   LIS     ++++    L   
Sbjct: 370 ITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNN 429

Query: 240 MHK--DMKTALP--IYFNLYGEKG 259
           M     + TA    ++ + YG+ G
Sbjct: 430 METLGVVPTAYTYILFIDFYGKSG 453



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 7/186 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN++ +   I          +A  + + M+  G  P + ++ +L+ A    G +     +
Sbjct: 262 PNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMEL 321

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M  S  KPD     +ML+ +   G   +++E  + ME   YA D+ T+ IL+N   +
Sbjct: 322 FVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCK 381

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G I++   L   +  + + P++ T+ + ++   R       L++F  M   G  P   T
Sbjct: 382 AGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYT 441

Query: 217 AKVLIS 222
             + I 
Sbjct: 442 YILFID 447



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 83/193 (43%), Gaps = 1/193 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + + M++ G+ P + ++  L++   +   +     + N M   G+ P  +    
Sbjct: 385 IDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYIL 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++ YG+ G+ +K  E    M+    A +I   N  +      G + + + +F  L +  
Sbjct: 445 FIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNG 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD VT+   +  YS+       +E+  +M +  C PD      LI+      ++++  
Sbjct: 505 LAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAW 564

Query: 235 TLVRTMHKDMKTA 247
            +   + KDMK A
Sbjct: 565 KMFCRL-KDMKLA 576



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 72/179 (40%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +F ++     +PT  ++  LL    K+G + + + +  +M   G +P+  + N ++N
Sbjct: 879  ALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILIN 938

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             +G+ G      E+   M +     D+ +Y  L+      G ++     F+ L    L  
Sbjct: 939  GFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYL 998

Query: 178  DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D + +   +    R       L +++EM   G  PD  T   LI        +EQ   L
Sbjct: 999  DSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKL 1057



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 5/217 (2%)

Query: 32  FMLINFLLLQHTPNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           F L+   +++   N ++ IF   F           F +M+  G      S+  L+    +
Sbjct: 147 FNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQ 206

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
           +G   +   +  +M   GLKP     ++++   G+    E ++ +L  ME      +I T
Sbjct: 207 SGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYT 266

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           Y I I + GR G I++   + + +      PDVVT+T  + A          +E+F +M 
Sbjct: 267 YTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMK 326

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +   PD  T   ++   S    + +V      M  D
Sbjct: 327 ASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEAD 363



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 4/190 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   VF  M+   I   + +++++       G + +      +M ++G   + +  N ++
Sbjct: 142 DMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLI 201

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +L  + G   +  E+   M        + T++ L+   G+    E ++ L + + +  LK
Sbjct: 202 HLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLK 261

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSS---EDQIEQ 232
           P++ T+T  +    R         I + M D GC PD  T  VLI A C++   +D +E 
Sbjct: 262 PNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMEL 321

Query: 233 VTTLVRTMHK 242
              +  + HK
Sbjct: 322 FVKMKASSHK 331


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D  AVF+ M   G+ P + S+  LL AY+  G  A   G+   + ++GL+PD     ++L
Sbjct: 350 DCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLL 409

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YGR GQ EK  E    M K S   +I +YN LI+ YG  G  ++   L   +    + 
Sbjct: 410 NAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIP 469

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG------CYPDG 214
           PDVV+ ++ L A  R +   +   I E     G      CY  G
Sbjct: 470 PDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSG 513



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 89/168 (52%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  +F+ +K+ G+ P + S+  LL AY ++G   K      +M K+  +P+    N++
Sbjct: 384 ADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNAL 443

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ YG  G F++   +L  MEK     D+ + + L+   GR   I K++ + ++  ++ +
Sbjct: 444 IDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGI 503

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           K ++V + S + +Y     Y + LE++  M+ +   PD  T  +LIS 
Sbjct: 504 KLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISG 551



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           KR    P + ++  ++ +Y   G V  C+ V + M   G+KP+    N++L  Y   G  
Sbjct: 324 KRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMH 383

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
                +   +++     D+ +Y  L+N YGR G  EK    F+ +     +P++V++ + 
Sbjct: 384 ADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNAL 443

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + AY    +++  + +  EM   G  PD  +   L++AC    QI ++ T++
Sbjct: 444 IDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTIL 495



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 91/207 (43%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  F     +S A A FE MK   I P   +  +++    K G   +   ++N
Sbjct: 260 LVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLN 319

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   ++   PD     S+++ Y   G+ E  + V   M       +I +YN L+  Y  
Sbjct: 320 SMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYAS 379

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G      G+F+ L    L+PDVV++T+ L AY R     +  E F+EM    C P+  +
Sbjct: 380 RGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVS 439

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S    ++  +L+  M KD
Sbjct: 440 YNALIDAYGSAGMFKEAISLLHEMEKD 466



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+EM++    P + S+  L+ AY   G   +   ++++M K G+ PD   I+++L 
Sbjct: 421 AREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLT 480

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR  Q  K++ +L A +      +I  YN  I  Y   G   K   L+  + A  + P
Sbjct: 481 ACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNP 540

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           D VT+   ++   +   Y   L+ FE+M+D
Sbjct: 541 DAVTYNILISGLCKVGKYAESLKFFEDMVD 570



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 35/223 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A ++  EM++ GI P + S   LLTA  +   + K + ++      G+K +    NS
Sbjct: 453 FKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNS 512

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN---------------------- 152
            +  Y   G + K  E+   M   +   D  TYNILI+                      
Sbjct: 513 GIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLR 572

Query: 153 -------------IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                         Y + G + + E  F S+      PDV+T+T+ + AY+    +R   
Sbjct: 573 IPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAW 632

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           ++F+EM      PD      L+ A +   Q E+V  L+  M +
Sbjct: 633 DLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMKE 675



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 1/171 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   + +  G+  +M +   KPD  + NS+++ + R GQ+     ++  M + 
Sbjct: 160 MMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRA 219

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     +TYN +IN  G  G  +K   L + +    + PD+VT    L+A+     Y + 
Sbjct: 220 AIPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKA 279

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           +  FE M  A   PD  T  ++I     + Q  +   L+ +M ++ +T  P
Sbjct: 280 IAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSM-REKRTQCP 329



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 52/243 (21%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A  +F EM+     P    +  L+ A+++ G       +++ M ++ + P     N+
Sbjct: 171 IDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNN 230

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-------GFIEKMEG-- 165
           ++N  G  G ++K  E+   M +     D+ T+NI+++ +  G        + E M+G  
Sbjct: 231 VINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGAN 290

Query: 166 --------------------------LFQSLPAKRLK--PDVVTWTSRLAAYSRKKLYRR 197
                                     L  S+  KR +  PDVVT+TS + +Y        
Sbjct: 291 IAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVED 350

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGE 257
           C  +F+ M+  G  P+  +   L+ A +S           R MH D   AL I F L  +
Sbjct: 351 CKAVFDMMVAEGVKPNIVSYNALLGAYAS-----------RGMHAD---ALGI-FKLLKQ 395

Query: 258 KGV 260
            G+
Sbjct: 396 NGL 398



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 52/105 (49%)

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +Y A    Y ++I ++ R   I++  GLF  +   R KPD   + S + A++R   +R  
Sbjct: 150 NYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQWRWA 209

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + I ++M+ A   P   T   +I+AC +    ++   L + M ++
Sbjct: 210 INIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRN 254



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 67/151 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           ++++   FE+M  L I  T + +  L+ +Y K G + + E   + M +SG  PD     +
Sbjct: 558 YAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTA 617

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+  Y   G +    ++   ME  +   D    + L+    RG   E++  L + +  K 
Sbjct: 618 MIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMKEKC 677

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +  +   +   +A+ S  + ++   EI E +
Sbjct: 678 IPLNQKAYFEIIASCSMLRDWKTASEIIEHL 708


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 89/184 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A ++F  +  LG+ P +++    +    K G V +   V +++ + GL PD F  +S++
Sbjct: 308 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 367

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G+ EK  E+   M     A +I  YN L++   + G I++   LF  +P K L+
Sbjct: 368 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE 427

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+++ +  Y + +       +F EM   G  P       L+  C  E  +E+   L
Sbjct: 428 PDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNL 487

Query: 237 VRTM 240
            R M
Sbjct: 488 FREM 491



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 88/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM++  + P+  S+  ++       +++    ++ +M  SGLKP+  V ++++ 
Sbjct: 134 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIM 193

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G+ E+   +L  M     A DI  YN +I+   + G +E+       +  + LKP
Sbjct: 194 GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP 253

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+ + +  YS+        + F+EM+D G  P+     VLI+       + +  ++ 
Sbjct: 254 DAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIF 313

Query: 238 RTMH 241
           R +H
Sbjct: 314 RHLH 317



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF E+K  G+ P + ++  L++ + K G V K   + ++M   G+ P+ F+ N+++
Sbjct: 343 EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALV 402

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  ++  ++   M +     D  TY+ +I+ Y +   + +   LF  +P+K ++
Sbjct: 403 DGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQ 462

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P    + + +    ++    + + +F EM+  G +    +   LI       +I++ + L
Sbjct: 463 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQL 521

Query: 237 VRTM 240
            + M
Sbjct: 522 FQEM 525



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 23  FNYLPYPSHFMLINFLLLQHT-----PNLFVFIFSIYFSDAHAVFEEMKRL-------GI 70
            N L +     L N LL + T     PN+ V+   I    +    EE +RL       G+
Sbjct: 157 INGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGV 216

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P +  +  +++  SK G + +    + ++   GLKPD     + +  Y + G+  +  +
Sbjct: 217 APDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK 276

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
               M       +   Y +LIN + + G + +   +F+ L A  + PDV T ++ +    
Sbjct: 277 YFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLL 336

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +    +  L++F E+ + G  PD  T   LIS    + ++E+   L   M
Sbjct: 337 KNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 386



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 82/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A   FEEM++ G+ P   +   L+  + + G++ +   + + M   G+  +    N 
Sbjct: 26  MNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 85

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G+ EK  E+L  M       +  T+ +LI  Y R   + +   L   +  + 
Sbjct: 86  LIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 145

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P  V++ + +      K      ++ E+M  +G  P+      LI   +SE +IE+  
Sbjct: 146 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEAR 205

Query: 235 TLVRTM 240
            L+  M
Sbjct: 206 RLLDGM 211



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 78/186 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A     E++  G+ P   +    +  YSKTG + +     ++M   GL P+  +   
Sbjct: 236 MEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTV 295

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + + G   +   +   +       D+ T +  I+   + G +++   +F  L  K 
Sbjct: 296 LINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKG 355

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PDV T++S ++ + ++    +  E+ +EM   G  P+      L+        I++  
Sbjct: 356 LVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRAR 415

Query: 235 TLVRTM 240
            L   M
Sbjct: 416 KLFDGM 421



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/256 (19%), Positives = 102/256 (39%), Gaps = 58/256 (22%)

Query: 43  TPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+F++         S     A  +F+ M   G+ P   ++  ++  Y K+ NVA+   
Sbjct: 392 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFS 451

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS---------- 145
           + ++M   G++P +FV N++++   + G  EK   +   M +  +A  +S          
Sbjct: 452 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCK 511

Query: 146 ------------------------TYNILINIYGRGGFIEKME----------------- 164
                                   TY  +I+ + + G +E+                   
Sbjct: 512 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVF 571

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            LF+ + AK +KPD VT+   + A+ ++       ++ +E++  G    G    +LI+A 
Sbjct: 572 ALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITAL 631

Query: 225 SSEDQIEQVTTLVRTM 240
              + + + + L+  M
Sbjct: 632 CKREDLTEASKLLDEM 647



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 75/165 (45%), Gaps = 1/165 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G+ P   ++ ++     +   + + +    +M K+GLKPD    +++++ + R G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +++  +   M       ++ TYN+LI+   + G +EK   + + +     KP+  T+  
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
            +  Y R+    R LE+ +EM      P   +   +I+  C  +D
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKD 165


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 115/248 (46%), Gaps = 20/248 (8%)

Query: 4   PQCTTCD---LCVAQR--APHSWN-FNYLPYPSHF---MLINFLLLQHTPNLFVFIFSIY 54
           P   TC+   LC+A+   +  +W  F  LP P+ F   ++I+FL  +             
Sbjct: 161 PNTRTCNHILLCLARERSSELAWRLFEQLPAPNVFTFNIMIDFLCKEGD----------- 209

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A A+   MK +G +P + ++  L+  Y K G + + E ++ +M   G +PD    N+
Sbjct: 210 LAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNA 269

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + + G+ E+       M++    A++ T++  ++ + + G + +   LF  +  K 
Sbjct: 270 LVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKG 329

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP+ VT+T  +    +       L +  EM+  G   +  T  VL+     E ++ +  
Sbjct: 330 MKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAE 389

Query: 235 TLVRTMHK 242
            + R M +
Sbjct: 390 DVFRLMER 397



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 90/198 (45%), Gaps = 1/198 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A++ F EMKR G+   + +    + A+ K G V +   +  QM   G+KP+      +++
Sbjct: 283 AYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVD 342

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ +    +   M +     ++ TY +L++   + G + + E +F+ +    ++ 
Sbjct: 343 GTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRA 402

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + + +T+ +  +   K   R L +  EM D G   D      LI    +  ++++  +L+
Sbjct: 403 NELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLL 462

Query: 238 RTMHK-DMKTALPIYFNL 254
             M +  +K    IY N+
Sbjct: 463 NKMDECGLKPNNVIYTNI 480



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 80/186 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A A+ ++M   G  P + ++  L+    K G++ +     N+M   GL+P+     ++
Sbjct: 491 SEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTAL 550

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+ +K   +L  M     + D      L++ + + G ++    L   +    L
Sbjct: 551 VDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGL 610

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D+  +T  +  +    + +   E+  EMI+ G  PD      LI+ C     +E+   
Sbjct: 611 QLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAI 670

Query: 236 LVRTMH 241
           L   M 
Sbjct: 671 LQNEME 676



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 71/152 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++  EMK  G+   +  +  L+        + + + ++N+M + GLKP+  +  ++++
Sbjct: 423 ALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMD 482

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +  +   +L  M    +  +I TY  L++   + G I++    F  +    L+P
Sbjct: 483 ACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEP 542

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +V  +T+ +    +     + + + +EMID G
Sbjct: 543 NVQAYTALVDGLCKNGRLDKAVLLLDEMIDKG 574



 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 4/149 (2%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           P+T   N +L    R    E+  E+   + +   A ++ T+NI+I+   + G + +   L
Sbjct: 161 PNTRTCNHILLCLAR----ERSSELAWRLFEQLPAPNVFTFNIMIDFLCKEGDLAEARAL 216

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
              + A    PDVVT+ S +  Y +        ++  EM   GC PD  T   L++    
Sbjct: 217 LARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCK 276

Query: 227 EDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
             ++E+  +    M ++   A  + F+ +
Sbjct: 277 FGRMERAYSYFAEMKREGVMANVVTFSTF 305



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/214 (16%), Positives = 85/214 (39%), Gaps = 35/214 (16%)

Query: 57  DAHAVFEEMKRLGITP-----------------------------------TMKSHMLLL 81
           +A  +F +M+  G+ P                                    + ++ +L+
Sbjct: 317 EAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLV 376

Query: 82  TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141
               K G VA+ E V   M ++G++ +  +  ++++ +      E+   +L+ M+     
Sbjct: 377 DGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGME 436

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            D+S Y  LI        +++ + L   +    LKP+ V +T+ + A  + +     + +
Sbjct: 437 LDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIAL 496

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            ++M+D+G  P+  T   L+        I++  +
Sbjct: 497 LQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAIS 530


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 77/159 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF+EM+R  I P + +  +L+ +  K G + +   V + M   G  PD F  N 
Sbjct: 271 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 330

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y   G    M ++   M     A D  T+N+ I  Y   G ++K   +F  +    
Sbjct: 331 MLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHG 390

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +KPDVVT+ + +AA  R       +E F +MID G  PD
Sbjct: 391 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 429



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 4/184 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   +M    + P   ++  L+  YS TG   +   V  +M +  + PD   ++ ++ 
Sbjct: 239 AEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 298

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  +V   M       D+ +YNI++N Y   G +  M  LF  +    + P
Sbjct: 299 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 358

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
           D  T+  ++ AY+   +  + + IF EM D G  PD  T + +I+A       +D +E+ 
Sbjct: 359 DFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 418

Query: 234 TTLV 237
             ++
Sbjct: 419 NQMI 422



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 87/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM + GI P + ++  ++ A  K   + K E  + QM    + P+ +  N+++ 
Sbjct: 204 ACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIY 263

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ+++   V   M + S   D+ T ++L+    + G I++   +F ++  K   P
Sbjct: 264 GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNP 323

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++   L  Y+ K       ++F+ M+  G  PD  T  V I A ++   +++   + 
Sbjct: 324 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIF 383

Query: 238 RTMH 241
             M 
Sbjct: 384 NEMR 387



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 79/173 (45%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           +P + ++  ++  + K G+V K   +  +M + G+ PD    NS+++   +    +K E 
Sbjct: 182 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 241

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
            L  M       +  TYN LI  Y   G  ++   +F+ +    + PDVVT +  + +  
Sbjct: 242 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 301

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           +    +   ++F+ M   G  PD  +  ++++  +++  +  +T L   M  D
Sbjct: 302 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD 354



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 49/110 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +F+ M   GI P   +  + + AY+  G + K   + N+M   G+KPD     +++
Sbjct: 343 DMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 402

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
               R+G+ +   E    M     A D   YN LI  +   G + K +G+
Sbjct: 403 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGILLKTQGI 452



 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 38/211 (18%), Positives = 82/211 (38%), Gaps = 38/211 (18%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----------------------- 106
           ++PT  ++ +L+   ++            Q+ ++GL+                       
Sbjct: 73  LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 132

Query: 107 -------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY--AADISTYNILI 151
                        PD F  N +L      G+  + + +L  M +G    + D+  YN +I
Sbjct: 133 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVI 192

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           + + + G + K   LF+ +  + + PD+VT+ S + A  + +   +      +M++    
Sbjct: 193 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 252

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           P+  T   LI   SS  Q ++   + + M +
Sbjct: 253 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 283


>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
 gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
          Length = 477

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 88/175 (50%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           ++E + +GI P + ++  ++++Y K G   K + V+N M K    P    +N++++ +GR
Sbjct: 292 YKEFQLMGIEPDIWTYNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGR 351

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  E+MEE    M+      +  TY  L+N YG+ G +EK++ + + +    + PD   
Sbjct: 352 AGNIEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPL 411

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +   +  Y +    R+  E+F EM +  C PDG T   +I A  ++   E    L
Sbjct: 412 FNCLINVYGQAGNVRKMGELFLEMKENKCVPDGITFATMIRALKAQGMTEDAQRL 466



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 8/191 (4%)

Query: 61  VFEEMKRL--------GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +FE+M+ L           P + +    + AY  +  + K E    +    G++PD +  
Sbjct: 248 MFEQMESLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTY 307

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           NSM++ YG+ G ++KM+ VL  MEK  ++  I T N +I+ +GR G IE+ME  F+++  
Sbjct: 308 NSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGRAGNIEEMEEYFKNMKF 367

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + +KP+ VT+ S + AY +     +   I  ++ ++   PD      LI+       + +
Sbjct: 368 QGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQAGNVRK 427

Query: 233 VTTLVRTMHKD 243
           +  L   M ++
Sbjct: 428 MGELFLEMKEN 438



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 37  FLLLQHTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           F L+   P+++ +  + S Y     +    +V   M++   +PT+ +   ++ ++ + GN
Sbjct: 295 FQLMGIEPDIWTYNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGRAGN 354

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           + + E     M   G+KP++    S++N YG+ G  EK++ +L  +E      D   +N 
Sbjct: 355 IEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNC 414

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           LIN+YG+ G + KM  LF  +   +  PD +T+ + + A
Sbjct: 415 LINVYGQAGNVRKMGELFLEMKENKCVPDGITFATMIRA 453



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 94/187 (50%), Gaps = 2/187 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSML 116
           A  +FE M   G+ P++  +  L++AY ++G + K    +++M   S  KPD    + ++
Sbjct: 146 ASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHKAISTVDEMKSISDCKPDVHTYSILI 205

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKRL 175
           +   RL +F+ ++++L  M       +  TYN +IN +G+    E+ME  L + + +   
Sbjct: 206 DCCTRLRRFDLLKKILADMSCLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESDSC 265

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD++T+ + + AY   +   +  + ++E    G  PD  T   +IS+       +++ +
Sbjct: 266 PPDLITFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTYNSMISSYGKAGMYDKMKS 325

Query: 236 LVRTMHK 242
           ++  M K
Sbjct: 326 VLNFMEK 332



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F+ MK  G+ P   ++  L+ AY K+G++ K + ++ Q+  S + PDT + N ++N+YG+
Sbjct: 362 FKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQ 421

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            G   KM E+   M++     D  T+  +I      G  E  + L   L A
Sbjct: 422 AGNVRKMGELFLEMKENKCVPDGITFATMIRALKAQGMTEDAQRLENKLIA 472



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 2/164 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P  +++  LL    K     +   +   M   GLKP   V  ++++ YG+ G   K    
Sbjct: 125 PRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHKAIST 184

Query: 132 LTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +  M+  S    D+ TY+ILI+   R    + ++ +   +    +  + VT+ + +  + 
Sbjct: 185 VDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTIINGFG 244

Query: 191 RKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQV 233
           + K++ +   +  EMI++  C PD  T    I A  + +QIE++
Sbjct: 245 KAKMFEQMESLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEKM 288



 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y     TY  L+ + G+    E+   LF+ + ++ LKP +  +T+ ++AY +  L  + +
Sbjct: 123 YEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHKAI 182

Query: 200 EIFEEMID-AGCYPDGGTAKVLISACS 225
              +EM   + C PD  T  +LI  C+
Sbjct: 183 STVDEMKSISDCKPDVHTYSILIDCCT 209


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 93/182 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G  P + S+ +L+ A++K G++ +   V  QM  +G  P+    + +LNLYG
Sbjct: 311 LLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYG 370

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+++ + E+   M++ S   D +TYNILI ++G GG+ +++  LF  L  + + P++ 
Sbjct: 371 KHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNME 430

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A  +  L+    +I   M   G  P       LI A       ++      TM
Sbjct: 431 TYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTM 490

Query: 241 HK 242
           ++
Sbjct: 491 NE 492



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 90/177 (50%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F EM+  G+ P + ++  LL+A +  G   + E V   M + G+ P+    + ++  +
Sbjct: 240 GLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETF 299

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+LG+ EK+  +L  ME   Y  DIS+YN+LI  + + G I++   +F+ + A    P+ 
Sbjct: 300 GKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNA 359

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            T++  L  Y +   Y    E+F +M ++   PD  T  +LI         ++V TL
Sbjct: 360 STYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTL 416



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 97/185 (52%), Gaps = 2/185 (1%)

Query: 61  VFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +F+ M+R +   P    + ++++   + G + KC  + ++M   G+    F   +++N Y
Sbjct: 134 LFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAY 193

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPD 178
           GR GQ+E   E+L  M++   + +I TYN +IN   RG    E + GLF  +  + ++PD
Sbjct: 194 GRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPD 253

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           +VT+ + L+A + + L      +F+ MI+ G  P+  T   ++       ++E+V  L++
Sbjct: 254 LVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLK 313

Query: 239 TMHKD 243
            M  +
Sbjct: 314 EMESE 318



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 82/168 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF+ M   GI P + ++  ++  + K G + K   ++ +M   G  PD    N ++
Sbjct: 272 EAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLI 331

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + +LG  ++  +V   M+      + STY+IL+N+YG+ G  + +  LF  +     +
Sbjct: 332 EAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAE 391

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           PD  T+   +  +     ++  + +F +++D    P+  T + L+ AC
Sbjct: 392 PDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFAC 439



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 101/204 (49%), Gaps = 5/204 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           + E MKR  ++P + ++  ++ A ++   +     G+  +M   G++PD    N++L+  
Sbjct: 205 LLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSAC 264

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              G  ++ E V   M +G    +I+TY+ ++  +G+ G +EK+  L + + ++   PD+
Sbjct: 265 AARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDI 324

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            ++   + A+++    +  +++F++M  AGC P+  T  +L++      + + V  L   
Sbjct: 325 SSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQ 384

Query: 240 MHKDM----KTALPIYFNLYGEKG 259
           M +       T   I   ++GE G
Sbjct: 385 MKESSAEPDATTYNILIRVFGEGG 408



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF++M+  G  P   ++ +LL  Y K G       +  QM +S  +PD    N ++
Sbjct: 342 EAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILI 401

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++G  G F+++  +   +   +   ++ TY  L+   G+GG  E  + +   +  K + 
Sbjct: 402 RVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIV 461

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           P    ++  + AY +  LY   L  F  M + G
Sbjct: 462 PSSKAYSGLIEAYGQAALYDEALVAFNTMNEVG 494



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 78/176 (44%), Gaps = 2/176 (1%)

Query: 43  TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N+ + +F    YF +   +F ++    I P M+++  L+ A  K G     + ++  M
Sbjct: 396 TYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHM 455

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
           +  G+ P +   + ++  YG+   +++       M +    + I TYN LI+ + RGG  
Sbjct: 456 NGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLY 515

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           ++ E +   +    +  +  +++  +  Y +   Y   ++ F EM    C  D  T
Sbjct: 516 KEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQT 571



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 73/152 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A   F  M  +G   T+ ++  L+  +++ G   + E ++++M + G+  +    + 
Sbjct: 480 YDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSG 539

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + GQ+E+  +    MEK     D  T   ++ +Y   G +++ +  F  + A  
Sbjct: 540 IIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASG 599

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + P V+ +   LA Y++   +    E+ +EMI
Sbjct: 600 ILPSVLCYCMMLAVYAKNGRWDDASELLDEMI 631



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +   M   GI P+ K++  L+ AY +     +     N M++ G K      NS++
Sbjct: 447 DAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLI 506

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R G +++ E +L+ M +   + +  +++ +I  Y + G  E+    F  +   R +
Sbjct: 507 HTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCE 566

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            D  T    L  Y    L     E F E+  +G  P
Sbjct: 567 LDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILP 602


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 93/182 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G  P + S+ +L+ A++K G++ +   V  QM  +G  P+    + +LNLYG
Sbjct: 311 LLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYG 370

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+++ + E+   M++ S   D +TYNILI ++G GG+ +++  LF  L  + + P++ 
Sbjct: 371 KHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNME 430

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A  +  L+    +I   M   G  P       LI A       ++      TM
Sbjct: 431 TYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTM 490

Query: 241 HK 242
           ++
Sbjct: 491 NE 492



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 90/177 (50%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F EM+  G+ P + ++  LL+A +  G   + E V   M + G+ P+    + ++  +
Sbjct: 240 GLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETF 299

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+LG+ EK+  +L  ME   Y  DIS+YN+LI  + + G I++   +F+ + A    P+ 
Sbjct: 300 GKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNA 359

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            T++  L  Y +   Y    E+F +M ++   PD  T  +LI         ++V TL
Sbjct: 360 STYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTL 416



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 97/185 (52%), Gaps = 2/185 (1%)

Query: 61  VFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +F+ M+R +   P    + ++++   + G + KC  + ++M   G+    F   +++N Y
Sbjct: 134 LFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAY 193

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPD 178
           GR GQ+E   E+L  M++   + +I TYN +IN   RG    E + GLF  +  + ++PD
Sbjct: 194 GRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPD 253

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           +VT+ + L+A + + L      +F+ MI+ G  P+  T   ++       ++E+V  L++
Sbjct: 254 LVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLK 313

Query: 239 TMHKD 243
            M  +
Sbjct: 314 EMESE 318



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 82/168 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF+ M   GI P + ++  ++  + K G + K   ++ +M   G  PD    N ++
Sbjct: 272 EAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLI 331

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + +LG  ++  +V   M+      + STY+IL+N+YG+ G  + +  LF  +     +
Sbjct: 332 EAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAE 391

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           PD  T+   +  +     ++  + +F +++D    P+  T + L+ AC
Sbjct: 392 PDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFAC 439



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 101/204 (49%), Gaps = 5/204 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           + E MKR  ++P + ++  ++ A ++   +     G+  +M   G++PD    N++L+  
Sbjct: 205 LLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSAC 264

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              G  ++ E V   M +G    +I+TY+ ++  +G+ G +EK+  L + + ++   PD+
Sbjct: 265 AARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDI 324

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            ++   + A+++    +  +++F++M  AGC P+  T  +L++      + + V  L   
Sbjct: 325 SSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQ 384

Query: 240 MHKDM----KTALPIYFNLYGEKG 259
           M +       T   I   ++GE G
Sbjct: 385 MKESSAEPDATTYNILIRVFGEGG 408



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF++M+  G  P   ++ +LL  Y K G       +  QM +S  +PD    N ++
Sbjct: 342 EAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILI 401

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++G  G F+++  +   +   +   ++ TY  L+   G+GG  E  + +   +  K + 
Sbjct: 402 RVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIV 461

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           P    ++  + AY +  LY   L  F  M + G
Sbjct: 462 PSSKAYSGLIEAYGQAALYDEALVAFNTMNEVG 494



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 78/176 (44%), Gaps = 2/176 (1%)

Query: 43  TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N+ + +F    YF +   +F ++    I P M+++  L+ A  K G     + ++  M
Sbjct: 396 TYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHM 455

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
           +  G+ P +   + ++  YG+   +++       M +    + I TYN LI+ + RGG  
Sbjct: 456 NGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLY 515

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           ++ E +   +    +  +  +++  +  Y +   Y   ++ F EM    C  D  T
Sbjct: 516 KEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQT 571



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 73/152 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A   F  M  +G   T+ ++  L+  +++ G   + E ++++M + G+  +    + 
Sbjct: 480 YDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSG 539

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + GQ+E+  +    MEK     D  T   ++ +Y   G +++ +  F  + A  
Sbjct: 540 IIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASG 599

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + P V+ +   LA Y++   +    E+ +EMI
Sbjct: 600 ILPSVLCYCMMLAVYAKNGRWDDASELLDEMI 631



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +   M   GI P+ K++  L+ AY +     +     N M++ G K      NS++
Sbjct: 447 DAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLI 506

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R G +++ E +L+ M +   + +  +++ +I  Y + G  E+    F  +   R +
Sbjct: 507 HTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCE 566

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            D  T    L  Y    L     E F E+  +G  P
Sbjct: 567 LDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILP 602


>gi|116789832|gb|ABK25404.1| unknown [Picea sitchensis]
          Length = 278

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 83/154 (53%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  +G+ P     N+M+++YG+  + +   ++  +++K   + D  TY+ +I+ YG+ GF
Sbjct: 1   MKAAGIVPSLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGF 60

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            +    LF  +  + +KP  VT+ + L AY+R  L+ R  E+F +M D G  PD  T   
Sbjct: 61  FQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLS 120

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           LI A ++  + ++   L++ MH+       ++FN
Sbjct: 121 LICAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFN 154



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F DA  +F  M++ GI P   ++  +L AY+++G   + E V N M   G  PD++   
Sbjct: 60  FFQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYL 119

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++  Y    +F++ E++L  M +   A  +  +N L+  +G+ G +E    L+  +   
Sbjct: 120 SLICAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFNHLVFAFGKAGLVEDATRLYMEIGKA 179

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            LK D+    + L  Y         + +FE++ +    PDG   ++ I    S  +I + 
Sbjct: 180 GLKSDLACHRTMLKIYRDNGRTHEGILLFEKLQNY-IEPDGNIYRMAIDLYESAGKIVEA 238

Query: 234 TTLVRTM 240
             + + M
Sbjct: 239 RYIFQLM 245



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 81/172 (47%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           MK  GI P+++++  +++ Y K   +     + N + KSGL  D    ++M++ YG+ G 
Sbjct: 1   MKAAGIVPSLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGF 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           F+   ++ + M++        TYN +++ Y R G   + E +F  +  +   PD  T+ S
Sbjct: 61  FQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLS 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            + AY+  + ++   ++ + M   G  P       L+ A      +E  T L
Sbjct: 121 LICAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFNHLVFAFGKAGLVEDATRL 172



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 74/159 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F  +++ G++   K++  +++ Y K G       + ++M + G+KP     N+
Sbjct: 26  LQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDAAKLFSRMQQEGIKPGKVTYNT 85

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+ Y R G   + EEV   M+   Y+ D  TY  LI  Y      ++ E L + +  + 
Sbjct: 86  MLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSLICAYTNCQRFQEAEDLLKRMHRQG 145

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L P +V +   + A+ +  L      ++ E+  AG   D
Sbjct: 146 LAPGLVHFNHLVFAFGKAGLVEDATRLYMEIGKAGLKSD 184


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M   G+ P   ++  ++    K   V   EGV  +M   G+KP     N++++
Sbjct: 244 AEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIID 303

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +    ++ E V   M       D  TYN +I+   +   I+K EG+FQ +  K +KP
Sbjct: 304 GLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKP 363

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+T  +    + +   R   +F++MID G  P+ GT   LI    S  Q E+V   +
Sbjct: 364 DNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRI 423

Query: 238 RTM 240
           + M
Sbjct: 424 KEM 426



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 95/184 (51%), Gaps = 5/184 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+++F EM   G++P + ++  ++    K   V + E V  QM + G+KP+    N++++
Sbjct: 212 AYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIID 268

Query: 118 LYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
              +  + +  E V   M +KG   +++ TYN +I+   +   +++ EG+FQ +  + +K
Sbjct: 269 GLCKAQEVDMAEGVFQKMVDKGVKPSNV-TYNTIIDGLCKAQAVDRAEGVFQQMIDRGVK 327

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+ + +    + +   +   +F++MID G  PD  T  ++I        +++   +
Sbjct: 328 PDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGV 387

Query: 237 VRTM 240
            + M
Sbjct: 388 FQQM 391



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 82/176 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M   G+ P   ++ +++    K  +V + EGV  QM   G+KP+    N +++
Sbjct: 349 AEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIH 408

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ+E++ + +  M       D+ TY +L++   + G   +   LF S+  K +KP
Sbjct: 409 GYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKP 468

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            V  +   L  Y +K       ++   M+  G  P+      +I A +    I++V
Sbjct: 469 SVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEV 524



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M   G+ P+  ++  ++    K   V + EGV  QM   G+KPD    N++++
Sbjct: 279 AEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIID 338

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +    +K E V   M       D  TY I+I+   +   +++ EG+FQ +  K +KP
Sbjct: 339 GLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKP 398

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+   +  Y     +   ++  +EM      PD  T  +L+       +  +  +L 
Sbjct: 399 NNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLF 458

Query: 238 RTM-HKDMKTALPIY---FNLYGEKG 259
            +M  K +K ++ IY    + YG+KG
Sbjct: 459 DSMIRKGIKPSVTIYGIMLHGYGKKG 484



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 2/201 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M   G+ P   ++  L+  Y  TG   +    I +M    L+PD F    +L+
Sbjct: 384 AEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLD 443

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+  +   +  +M +      ++ Y I+++ YG+ G + +M  L   + A  + P
Sbjct: 444 YLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISP 503

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   + + + AY+++ +    + IF +M   G  P+  T   LI A     +++      
Sbjct: 504 NHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQF 563

Query: 238 RTMHKDMKTALPIYFN--LYG 256
             M  +  T   + FN  +YG
Sbjct: 564 NQMINEGVTPNNVVFNSLVYG 584



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 84/180 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F +MK+ G++P + ++  L+ A  K G V       NQM   G+ P+  V NS++    
Sbjct: 527 IFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLC 586

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            + ++EK+EE+   M       DI  +N ++    + G + +   L  S+    LKPDV+
Sbjct: 587 TVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVI 646

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + +  +         +++ + M+ AG  P+  +   L+       +I+    L R M
Sbjct: 647 SYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREM 706



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 91/185 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A ++F+ M R GI P++  + ++L  Y K G +++   ++N M  +G+ P+  + N++
Sbjct: 452 NEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTV 511

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y +    +++  +   M++   + ++ TY  LI+   + G ++     F  +  + +
Sbjct: 512 ICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGV 571

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ V + S +        + +  E+F EM++ G  PD      ++     E ++ +   
Sbjct: 572 TPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARR 631

Query: 236 LVRTM 240
           L+ +M
Sbjct: 632 LIDSM 636



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 86/192 (44%)

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           F+    +A  + + M   G+ P + S+  LL  Y K G +     +  +M + G+ P   
Sbjct: 657 FASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVE 716

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N++LN   R G+F +  E+   M K      I TY+I+++ + +    ++   +FQSL
Sbjct: 717 TYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSL 776

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            +  L+ D++T+   +    +       +++F  +   G  P   T +++      E  +
Sbjct: 777 CSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSL 836

Query: 231 EQVTTLVRTMHK 242
           E++  L   M K
Sbjct: 837 EELDCLFSVMEK 848



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 7/171 (4%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN  VF   +Y       +     +F EM   GI P +     +L    K G V +   
Sbjct: 572 TPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARR 631

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +I+ M   GLKPD    N++++ +    + ++  ++L  M       +I +YN L++ Y 
Sbjct: 632 LIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYC 691

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + G I+    LF+ +  K + P V T+ + L    R   +    E++  MI
Sbjct: 692 KAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMI 742



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 6/148 (4%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG---SYAADISTYNILIN 152
           ++ QM + G +      N++L       + E+  E+L  M  G   S + D+ +YNI+IN
Sbjct: 142 LLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVIN 201

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            +   G ++K   LF  +    + PDVVT+ + +    + +   R  ++F++M++ G  P
Sbjct: 202 GFFNEGQVDKAYSLFLEMG---VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKP 258

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +  T   +I       +++    + + M
Sbjct: 259 NNVTYNTIIDGLCKAQEVDMAEGVFQKM 286



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/167 (18%), Positives = 73/167 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + + M  +G+ P + S+  L+  +     + +   +++ M  +GLKP+    N++L
Sbjct: 628 EARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLL 687

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y + G+ +    +   M +      + TYN ++N   R G   +   L+ ++   R  
Sbjct: 688 HGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKL 747

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             + T++  L  + +   +    +IF+ +       D  T  ++I  
Sbjct: 748 WSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDG 794


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 94/183 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M R G+TP++ +   L+ A  + G++ +   V +++ ++GL P+    +++++
Sbjct: 183 ALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIH 242

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   GQ ++    L  M       +  TY+ LIN  GR G + +       +    ++P
Sbjct: 243 SHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEP 302

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVTWT+ + A  + K      ++F+EM + G  P+G T   L+ AC   D+++    ++
Sbjct: 303 NVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVL 362

Query: 238 RTM 240
             M
Sbjct: 363 EHM 365



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 92/185 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F EM   GITP +++   L+ A++K G+  +   V +QM + G+ P     N++++
Sbjct: 148 AERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLID 207

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR G  ++  +V + + +   + +  T++ LI+ +   G +++     Q + A+ L+P
Sbjct: 208 ACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEP 267

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + VT+++ + A  R     R  +  +EM   G  P+  T   LI AC    ++E    L 
Sbjct: 268 NRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLF 327

Query: 238 RTMHK 242
           + M +
Sbjct: 328 KEMRE 332



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 81/176 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D  A +E M    + PT+ +   L++       V   E    +M ++G+ PD   INS++
Sbjct: 112 DCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLI 171

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + + G  ++  +V   M +      + T+N LI+  GR G I++   +F  L    L 
Sbjct: 172 NAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLS 231

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           P+  T+++ + +++ +          +EM   G  P+  T   LI+AC    Q+ +
Sbjct: 232 PNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLAR 287



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 87/185 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  + + G++P  ++   L+ +++  G V +    + +M   GL+P+    ++++N
Sbjct: 218 ARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALIN 277

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR GQ  +  + L  M       ++ T+  LI+  G+G  +E    LF+ +  +   P
Sbjct: 278 ACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVP 337

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + VT ++ + A  +         + E M+D G  P   T   L++ C+   Q ++   ++
Sbjct: 338 NGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCARLGQADRAGIVL 397

Query: 238 RTMHK 242
             ++K
Sbjct: 398 DELNK 402



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 67/162 (41%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           + L A    G +  C      M    L+P     +++++  G   +    E     M + 
Sbjct: 99  VFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEA 158

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               D+   N LIN + + G  ++   +F  +    + P V+T+ + + A  R     R 
Sbjct: 159 GITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRA 218

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            ++F  +  AG  P+  T   LI + + + Q+++  + ++ M
Sbjct: 219 RQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEM 260



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 96   VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM----EKGSYAADISTYNILI 151
            V  +M   G++PD    N+++N    LG+F++   V+  M    E G    D  TY  LI
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 152  NIYGRG--GFIEKMEGLFQSLPAKR------LKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
                R     +E+ E +F ++  +        +P  VT+   + A    + Y R LEI+ 
Sbjct: 941  KAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWR 1000

Query: 204  EMIDAGCYP 212
            + + AG  P
Sbjct: 1001 QQLSAGVAP 1009



 Score = 43.5 bits (101), Expect = 0.087,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT---SRLAAYSRKKLYRRCLEIFEE 204
           N+ +   G  G I+     ++++ A +L+P +VT++   SR  A  R +L  R    F E
Sbjct: 98  NVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAER---FFRE 154

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           M++AG  PD      LI+A +     +Q   +   M +   T   I FN
Sbjct: 155 MLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFN 203



 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           + +L L+G+  Q +   +VL  M +   + D  T+ +L+N     G ++K   L +   A
Sbjct: 546 SDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRA 605

Query: 173 KRLKPDV--VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           +    ++  +T+++ L A  R K   R   I + M + G  P  GT   L+  C
Sbjct: 606 EGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVC 659



 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N  L   G  G+ +       AM        I T++ LI+  G    +   E  F+ +  
Sbjct: 98  NVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLE 157

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             + PDV    S + A+++     + L++F++M   G  P   T   LI AC     I++
Sbjct: 158 AGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDR 217



 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 3/172 (1%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           LL  + +   V     V+  M +    PD      +LN     G  +K  E++       
Sbjct: 548 LLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEG 607

Query: 140 YAADIS--TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
           + ++I+  TY+ L+   GR   + +   + QS+    +KP   T+ + +      +  + 
Sbjct: 608 HGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKA 667

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
            +E+FE M   G  P   +   L+ A S E+ + +   L RT   + + + P
Sbjct: 668 AVEVFEAMETEGVRPGVRSYTSLLKAISEENTL-RTRALQRTRMLETRRSPP 718


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE M R G+  T+ ++  L+ A SK G V + + + ++  + G++PD  + N+++N
Sbjct: 680 ALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 739

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  ++  E++  MEK   A D  TYN L+      G +++   L   +  + ++P
Sbjct: 740 SHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 799

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + ++ YS K   +  L I  EM++ G  P   T   LI       Q +    +V
Sbjct: 800 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 859

Query: 238 RTM 240
           + M
Sbjct: 860 KEM 862



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 82/169 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+E  R GI P +  +  L+ ++S +GN+ +   ++ +M K  + PD    N+++    
Sbjct: 718 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLC 777

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            LG+ ++  +++  M +     D+ TYN LI+ Y   G ++    +   +  K   P ++
Sbjct: 778 LLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLL 837

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           T+ + +    +         + +EM++ G  PD  T   LI   ++ED+
Sbjct: 838 TYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDE 886



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 84/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A+ + EEM   G+ P + ++ +L+  + K GNV K   +   M + G++       ++
Sbjct: 643 TEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTAL 702

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + GQ ++ +++     +     D+  YN LIN +   G I++   +   +  KR+
Sbjct: 703 IYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI 762

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD VT+ + +             ++ +EM + G  PD  T   LIS  S +  ++    
Sbjct: 763 APDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALR 822

Query: 236 LVRTM 240
           +   M
Sbjct: 823 IRNEM 827



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 4/207 (1%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           + M   G+  T+ ++ LL+ A    G   +   ++ +M   GL PD F  N ++N + + 
Sbjct: 615 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE 674

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  +K  E+   M +    A + TY  LI    + G +++ + LF     + ++PD+V +
Sbjct: 675 GNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 734

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-H 241
            + + ++S      R  EI  EM      PD  T   L+       ++++   L+  M  
Sbjct: 735 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 794

Query: 242 KDMKTALPIYFNL---YGEKGVARSNL 265
           + ++  L  Y  L   Y  KG  +  L
Sbjct: 795 RGIQPDLVTYNTLISGYSMKGDVKDAL 821



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 37/222 (16%)

Query: 58  AHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSM 115
           A  +  EM+ R GI P   ++  +++ + K G V +   V ++M   G +KP+  + N++
Sbjct: 538 ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNAL 597

Query: 116 LNLYGRLGQF-------EKMEEVLTAMEKGSY---------------------------- 140
           +  Y   G+        ++M E   AM   +Y                            
Sbjct: 598 IGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGL 657

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
           A D+ TYNILIN + + G ++K   +F+++  + ++  VVT+T+ + A S+K   +   +
Sbjct: 658 APDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDK 717

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +F+E +  G  PD      LI++ S+   I++   ++  M K
Sbjct: 718 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 759



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  + +EM   GI P + ++  L++ YS  G+V     + N+M   G  P     N++
Sbjct: 783 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 842

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +    + GQ +  E ++  M +     D STY  LI
Sbjct: 843 IQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 878



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 56/127 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM++  I P   ++  L+      G V +   +I++M + G++PD    N++++
Sbjct: 750 AFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLIS 809

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  +    +   M    +   + TYN LI    + G  +  E + + +    + P
Sbjct: 810 GYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITP 869

Query: 178 DVVTWTS 184
           D  T+ S
Sbjct: 870 DDSTYIS 876


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG----NVAKCEGVINQMHKS 103
           V+  +  F+    + + M+  G  P + S   L+ A  K G    NVA    ++N++ +S
Sbjct: 219 VYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAI--ELLNEVRRS 276

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           GL+PD    N++++   R    E+  +V   ME      D+ TYN +I++YGR GF  K 
Sbjct: 277 GLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKA 336

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           E LF+ L +K   PD VT+ S L A++R+    +  EI  EM+  G   D  T   +I  
Sbjct: 337 EQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHM 396

Query: 224 CSSEDQIEQVTTLVRTMHKDMK 245
              + Q      L   +++DMK
Sbjct: 397 YGKQGQ----HGLALQLYRDMK 414



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             ++A  +++ MK  G  PTM  + +++    K   V   E ++ +M ++G +PD  + NS
Sbjct: 856  IAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNS 915

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ML LY  +  F K  ++   +++     D  TYN LI +Y R    E+   L   +    
Sbjct: 916  MLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIG 975

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            L+P + T+ S +AA+ +++L     E+FEE++  G   D
Sbjct: 976  LEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLD 1014



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 93/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  E++R G+ P + ++  L++A S+  N+ +   V + M     +PD +  N+M++
Sbjct: 266 AIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMIS 325

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR G   K E++   +E   Y  D  TYN L+  + R G ++K++ +   +       
Sbjct: 326 VYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIR 385

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y ++  +   L+++ +M  +G  PD  T  VLI +    +++ +   ++
Sbjct: 386 DEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVM 445

Query: 238 RTM 240
             M
Sbjct: 446 SEM 448



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 23/252 (9%)

Query: 3   KPQCTTCDLCVA---------QRAPH--SW-NFNYLPYPSHFMLINFLLLQHTPNLFVFI 50
           K Q T  D C           QRA     W N  +   P+  ML   L +    N     
Sbjct: 136 KVQMTPTDFCFVVKWVGQENWQRALEVFEWLNLRHWYSPNARMLATILAVLGKANQEALA 195

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
             I+      V           T++ +  ++  Y++TG   K +G+++ M + G +PD  
Sbjct: 196 VEIFIRAESTV---------DNTVQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLV 246

Query: 111 VINSMLNLYGRLGQFEK--MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
             N+++N   + G        E+L  + +     DI TYN LI+   R   +E+   +F 
Sbjct: 247 SFNTLINARLKAGAMTPNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFD 306

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            + A   +PD+ T+ + ++ Y R     +  ++F+E+   G +PD  T   L+ A + E 
Sbjct: 307 DMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREG 366

Query: 229 QIEQVTTLVRTM 240
            +++V  +   M
Sbjct: 367 NVDKVKEICNEM 378



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 13/231 (5%)

Query: 44  PNLFVF--IFSIY----FS-DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y    FS  A  +F+E++  G  P   ++  LL A+++ GNV K + +
Sbjct: 315 PDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEI 374

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            N+M + G   D    N+++++YG+ GQ     ++   M+      D  TY +LI+  G+
Sbjct: 375 CNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGK 434

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              + +   +   +    +KP + T+++ +  Y+R        E F+ M  +G  PD   
Sbjct: 435 ANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLA 494

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
             V++      D+  +   L R M +D  T  P  +      G    NLG+
Sbjct: 495 YSVMLDVFLRFDEATKAMMLYREMVRDGITPDPTVY------GAMLRNLGR 539



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 85/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AVF  M R G +PT+ S   LL A    G + +   V  ++   G +     I  
Sbjct: 786 YEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILL 845

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ + R+    + +++   M+   Y   +  Y I+I +  +G  +  +E +   +    
Sbjct: 846 ILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAG 905

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PD+  W S L  Y+    +R+ ++I++ + + G  PD  T   LI     + + E+  
Sbjct: 906 FRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGC 965

Query: 235 TLVRTMHK 242
           +L+  M +
Sbjct: 966 SLMHEMRR 973



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%)

Query: 60   AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            ++  EM+R+G+ P + ++  L+ A+ K   V   E +  ++   G K D    + M+ +Y
Sbjct: 966  SLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIY 1025

Query: 120  GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               G   K E++L+ M+       I+T ++L+  YG  G  ++ E +  +L    L    
Sbjct: 1026 RNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLST 1085

Query: 180  VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            + ++S + AY + K Y   ++   EM   G  PD       I A S  +       L++ 
Sbjct: 1086 LPYSSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILLLQA 1145

Query: 240  MH 241
            + 
Sbjct: 1146 LQ 1147



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 57/114 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  EM  +G+ PT++++  L+  Y++ G   + E   + M +SG++PD    + ML
Sbjct: 440 EAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVML 499

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           +++ R  +  K   +   M +     D + Y  ++   GR   +E ++ + + +
Sbjct: 500 DVFLRFDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDM 553



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 4/196 (2%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            D  A+  EM+  G  P +     +L  Y+   +  K   +  ++ + GL+PD    N+++
Sbjct: 893  DVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLI 952

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +Y R  + E+   ++  M +      + TY  LI  +G+   +   E LF+ L +K  K
Sbjct: 953  VMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSK 1012

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ---IEQV 233
             D   +   +  Y     + +  ++   M DAG  P   T  +L+ +  S  Q    E+V
Sbjct: 1013 LDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKV 1072

Query: 234  TTLVRTMHKDMKTALP 249
             T ++ M   + T LP
Sbjct: 1073 LTNLKEMGLSLST-LP 1087



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ +MK  G TP   ++ +L+ +  K   + +   V+++M   G+KP     ++++ 
Sbjct: 406 ALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALIC 465

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R GQ  + EE    M +     D   Y+++++++ R     K   L++ +    + P
Sbjct: 466 GYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMVRDGITP 525

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM---------------IDAGCYPDGGTAKVLIS 222
           D   + + L    R+        I  +M               +   CY D   A +L  
Sbjct: 526 DPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNPQAIASILVKGECYEDA--AGMLRL 583

Query: 223 ACSSEDQIE 231
           A S  D+I+
Sbjct: 584 AISGSDEID 592



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 78/154 (50%), Gaps = 2/154 (1%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            DA  +FEE+   G       + +++  Y  +GN +K E +++ M  +G++P    ++ ++
Sbjct: 998  DAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLM 1057

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRL 175
              YG  GQ ++ E+VLT +++   +     Y+ +I+ Y +   +   ++ L + +  + L
Sbjct: 1058 VSYGSSGQPQEAEKVLTNLKEMGLSLSTLPYSSVIDAYLKNKDYSVGIQKLVE-MKKEGL 1116

Query: 176  KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +PD   WT  + A S  +     + + + + D+G
Sbjct: 1117 EPDHRIWTCFIRAASLSEHTHDAILLLQALQDSG 1150



 Score = 43.5 bits (101), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F+ M+R GI P   ++ ++L  + +     K   +  +M + G+ PD  V  +ML
Sbjct: 475 EAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMVRDGITPDPTVYGAML 534

Query: 117 NLYGRLGQFEKMEEVLTAMEK 137
              GR  + E ++ ++  ME+
Sbjct: 535 RNLGRENKVEDIQRIIRDMEE 555



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 1/152 (0%)

Query: 91  AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME-KGSYAADISTYNI 149
           A+   + + M  +G+KP   +  SM+ +Y ++G  E    ++   E +G     IS    
Sbjct: 681 AEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLIDLAEIEGMPFDKISIDVA 740

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +I  YG+    +K E L  +L  +    D   W + + AY+    Y +   +F  M+  G
Sbjct: 741 VIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDG 800

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             P   +   L+ A   + ++E++  + + + 
Sbjct: 801 PSPTVDSINGLLQALIVDGRLEELYVVTQEIQ 832



 Score = 41.6 bits (96), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 68/164 (41%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AY+ +G   +   V N M + G  P    IN +L      G+ E++  V   ++   
Sbjct: 776 LIQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMG 835

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +    S+  ++++ + R   I + + ++Q + A    P +  +   +    + K  R   
Sbjct: 836 FQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVE 895

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +  EM +AG  PD      ++   +  D   +   + + + +D
Sbjct: 896 AMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKED 939


>gi|413917168|gb|AFW57100.1| hypothetical protein ZEAMMB73_992270 [Zea mays]
          Length = 442

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 8/189 (4%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H  N   F  +  IY     F+ A  VF   ++ G+   + S+  ++ AY+K GN     
Sbjct: 226 HLANTVTFNVLLDIYGKAGLFNRAEKVFIMARKQGLADII-SYNTIIAAYAKGGNFLSMN 284

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
             +  M  +G        N ML+ YG+ G+ E+   VL  M++     D  TYNI+INIY
Sbjct: 285 YFVQMMQDAGFPVSLEAYNCMLDAYGKAGRLEEFASVLQKMKRAKCKFDHYTYNIMINIY 344

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           GR G+I+ +  +   L  + ++PD+ ++ + + AY   ++    +++ +EM   G  PD 
Sbjct: 345 GRRGWIQDVSNVLAELKDRGVEPDLYSYNTLIKAYGIARMPEDAVKLMQEMRVKGISPDR 404

Query: 215 GTAKVLISA 223
            T   LI+A
Sbjct: 405 VTYANLIAA 413



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 1/181 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM + G      +  +LL  Y K G   + E V     K GL  D    N+++  Y 
Sbjct: 217 IFDEMLQQGHLANTVTFNVLLDIYGKAGLFNRAEKVFIMARKQGL-ADIISYNTIIAAYA 275

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G F  M   +  M+   +   +  YN +++ YG+ G +E+   + Q +   + K D  
Sbjct: 276 KGGNFLSMNYFVQMMQDAGFPVSLEAYNCMLDAYGKAGRLEEFASVLQKMKRAKCKFDHY 335

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  Y R+   +    +  E+ D G  PD  +   LI A       E    L++ M
Sbjct: 336 TYNIMINIYGRRGWIQDVSNVLAELKDRGVEPDLYSYNTLIKAYGIARMPEDAVKLMQEM 395

Query: 241 H 241
            
Sbjct: 396 R 396



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 10/219 (4%)

Query: 48  VFIFSIYFSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK 106
           ++I +    DA +V  EM K+  I P     + +L  Y K G + K       + KS +K
Sbjct: 133 MYIKARRLKDACSVLAEMEKQKEIIPDKYLFLDMLRTYQKCGLLEKLADTYYWIRKSQVK 192

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
            D  + N ++N  GR    +++  +   M +  + A+  T+N+L++IYG+ G   + E +
Sbjct: 193 CDEAMYNCIINCCGRAIPVDELSRIFDEMLQQGHLANTVTFNVLLDIYGKAGLFNRAEKV 252

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA-KVLISACS 225
           F  +  K+   D++++ + +AAY++   +       + M DAG +P    A   ++ A  
Sbjct: 253 F-IMARKQGLADIISYNTIIAAYAKGGNFLSMNYFVQMMQDAG-FPVSLEAYNCMLDAYG 310

Query: 226 SEDQIEQVTTLVRTMHK-----DMKTALPIYFNLYGEKG 259
              ++E+  ++++ M +     D  T   I  N+YG +G
Sbjct: 311 KAGRLEEFASVLQKMKRAKCKFDHYT-YNIMINIYGRRG 348



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 1/149 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVIN 113
           F+DA  +  E+K       M ++ +++  Y K   +     V+ +M K   + PD ++  
Sbjct: 105 FADAETILLELKASASVLDMIAYSVIVRMYIKARRLKDACSVLAEMEKQKEIIPDKYLFL 164

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ML  Y + G  EK+ +    + K     D + YN +IN  GR   ++++  +F  +  +
Sbjct: 165 DMLRTYQKCGLLEKLADTYYWIRKSQVKCDEAMYNCIINCCGRAIPVDELSRIFDEMLQQ 224

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
               + VT+   L  Y +  L+ R  ++F
Sbjct: 225 GHLANTVTFNVLLDIYGKAGLFNRAEKVF 253



 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/187 (17%), Positives = 82/187 (43%), Gaps = 5/187 (2%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ +  + GN      + NQM KS   P+  +  +M++++  + +F   E +L  ++  
Sbjct: 59  ILICSCKEGGNYNDAVRIYNQMPKSETHPNPRISCTMIDVFSTMERFADAETILLELKAS 118

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLP-AKRLKPDVVTWTSRLAAYSRKKLYRR 197
           +   D+  Y++++ +Y +   ++    +   +   K + PD   +   L  Y +  L  +
Sbjct: 119 ASVLDMIAYSVIVRMYIKARRLKDACSVLAEMEKQKEIIPDKYLFLDMLRTYQKCGLLEK 178

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN---- 253
             + +  +  +    D      +I+ C     +++++ +   M +    A  + FN    
Sbjct: 179 LADTYYWIRKSQVKCDEAMYNCIINCCGRAIPVDELSRIFDEMLQQGHLANTVTFNVLLD 238

Query: 254 LYGEKGV 260
           +YG+ G+
Sbjct: 239 IYGKAGL 245


>gi|449469755|ref|XP_004152584.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Cucumis sativus]
          Length = 708

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H+    +  +S+  +   A++ FE M R G+ P+++++  LL A+ + G+      +   
Sbjct: 471 HSYTALIHAYSVSGWHEKAYSAFENMLREGLKPSIETYTTLLDAFRRAGDTVSLMKIWKL 530

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  +       N++L+ + + G + +  +V++  +K      + TYN+L+N Y RGG 
Sbjct: 531 MIREKVLGTRVTFNTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQ 590

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             K+  L Q + A+ LKPD VT+++ + A+ R + ++R     ++M+ +G  PD
Sbjct: 591 HLKLPQLLQEMAARDLKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPD 644



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM++ G+   +  +  ++ A+SK+  + + EGV  +M   G+KP +   N ++N Y R  
Sbjct: 354 EMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRM 413

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKRLKPDVVTW 182
           Q E +E++L  M+      ++ +Y  LI+ YGR   +  M    F  +    ++P   ++
Sbjct: 414 QPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSY 473

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+ + AYS    + +    FE M+  G  P   T   L+ A
Sbjct: 474 TALIHAYSVSGWHEKAYSAFENMLREGLKPSIETYTTLLDA 514



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 1/160 (0%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            F  S    +A  VF EMK  G+ PT  S  +L+ AYS+       E ++ +M   GL+P
Sbjct: 373 AFSKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEP 432

Query: 108 DTFVINSMLNLYGRLGQFEKM-EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           +      +++ YGR  +   M  +    M+K        +Y  LI+ Y   G+ EK    
Sbjct: 433 NVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSA 492

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           F+++  + LKP + T+T+ L A+ R       ++I++ MI
Sbjct: 493 FENMLREGLKPSIETYTTLLDAFRRAGDTVSLMKIWKLMI 532



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 87/184 (47%), Gaps = 2/184 (1%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EMK +G+ P +KS+  L++AY +   ++        +M K+G++P +    ++++ Y   
Sbjct: 424 EMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVS 483

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  EK       M +      I TY  L++ + R G    +  +++ +  +++    VT+
Sbjct: 484 GWHEKAYSAFENMLREGLKPSIETYTTLLDAFRRAGDTVSLMKIWKLMIREKVLGTRVTF 543

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-H 241
            + L  +++   Y    ++  E    G  P   T  +L++A +   Q  ++  L++ M  
Sbjct: 544 NTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAA 603

Query: 242 KDMK 245
           +D+K
Sbjct: 604 RDLK 607



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 52/100 (52%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++ +A  V  E  ++G+ PT+ ++ +L+ AY++ G   K   ++ +M    LKPD+   +
Sbjct: 555 HYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAARDLKPDSVTYS 614

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M+  + R+  F++       M K     D+ +Y  L +I
Sbjct: 615 TMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSI 654



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 14/118 (11%)

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           Y++L  + GR G  EK+  LF++LP K+   DV  + S ++     K Y    +++E M 
Sbjct: 226 YSLLFPLLGRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAISGLMVCKRYDDACKVYEAME 285

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSN 264
                PD  T  ++I             T++R + +  K +   YF    +KGV  S+
Sbjct: 286 TNNVNPDHVTCSIMI-------------TVMRKIGRSAKDSWD-YFEKMNQKGVKWSS 329


>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 100/204 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VFEEM   G+ PT K++ +LL A++ +G V + + V   M +  + PD +   +ML
Sbjct: 339 EALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTML 398

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y      E  E+    ++   +  +I TY  LI  Y +   +EKM  +++ +    +K
Sbjct: 399 SAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIK 458

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +    T+ + A  R K +   L  ++EM   G  PD     VL+S  S++D++E+   L
Sbjct: 459 ANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 518

Query: 237 VRTMHKDMKTALPIYFNLYGEKGV 260
               ++       +Y +   E+GV
Sbjct: 519 TGIRNETATIIARVYGSDDDEEGV 542



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 70/236 (29%)

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG-------------- 123
           ++L+TAY K GN    E V++ + K G  P+     +++  YGR G              
Sbjct: 150 LMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQS 209

Query: 124 ---------------------QFEKMEEVLTAM---EKGSYAADISTYNILINIYGRGGF 159
                                +F++ EEV   +   +K     D   Y+++I +Y + G 
Sbjct: 210 SGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGN 269

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLA-------------------------------- 187
            EK   +F S+  K +    VT+ S ++                                
Sbjct: 270 YEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIK 329

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           AY R +     L +FEEM+DAG  P      +L+ A +    +EQ  T+ ++M +D
Sbjct: 330 AYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD 385



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 35/231 (15%)

Query: 46  LFVFIFSIYFSDAHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI----- 97
           L  F+    F +A  VFE +   K+  + P  K + +++  Y K GN  K   V      
Sbjct: 223 LKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVG 282

Query: 98  ---------------------------NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
                                      +QM +S ++PD      ++  YGR  + E+   
Sbjct: 283 KGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALS 342

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           V   M           YNIL++ +   G +E+ + +F+S+   R+ PD+ ++T+ L+AY 
Sbjct: 343 VFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYV 402

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
                    + F+ +   G  P+  T   LI   +  + +E++  +   M 
Sbjct: 403 NASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 453



 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 51/115 (44%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  L  ++ +     A   F+ +K  G  P + ++  L+  Y+K  +V K   V  
Sbjct: 391 LWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYE 450

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M  SG+K +  ++ ++++  GR   F         ME      D    N+L+++
Sbjct: 451 KMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSL 505


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 78/159 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF+EM+R  I P + +  +L+ +  K G + +   V + M   G  P+ F    
Sbjct: 305 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTI 364

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y   G    M ++   M     A DI T+N+LI  Y   G ++K   +F  +    
Sbjct: 365 MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 424

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +KPDVVT+ + +AA  R       +E F +MID G  PD
Sbjct: 425 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 463



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 4/184 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   +M   G+ P   ++  L+  YS TG   +   V  +M +  + PD   ++ ++ 
Sbjct: 273 AEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 332

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  +V   M       ++ +Y I++N Y   G +  M  LF  +    + P
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
           D+ T+   + AY+   +  + + IF EM D G  PD  T + +I+A       +D +E+ 
Sbjct: 393 DIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452

Query: 234 TTLV 237
             ++
Sbjct: 453 NQMI 456



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 88/181 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM + GI P   ++  ++ A  K   + K E  + QM   G+ P+ +  N+++  Y 
Sbjct: 241 LFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYS 300

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             GQ+++   V   M + S   D+ T ++L+    + G I++   +F ++  K   P+V 
Sbjct: 301 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVF 360

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++T  L  Y+ K       ++F+ M+  G  PD  T  VLI A ++   +++   +   M
Sbjct: 361 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 241 H 241
            
Sbjct: 421 R 421



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+  G+ P + ++  ++ A  + G +       NQM   G+ PD +  + ++ 
Sbjct: 413 AMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQ 472

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G   K +E+++ +       DI  ++ +IN   + G +   + +F       L P
Sbjct: 473 GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             V ++  +  Y       + L +F+ M+ AG  P+      L++      +I++  +L 
Sbjct: 533 TAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLF 592

Query: 238 RTM-HKDMKTALPIY 251
           R M  K +K +  +Y
Sbjct: 593 REMLQKGIKPSTILY 607



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 80/181 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+ M   GI P    +  L+  Y K G + +   +  +M + G+KP T + N +++   
Sbjct: 556 VFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 615

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+    +     M +   A +  TYNI++    +    ++   LF+ L A  +K +++
Sbjct: 616 EAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINII 675

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T  + +A   + +      ++F  +  +G  P   T  ++I+    E  +E+   +  +M
Sbjct: 676 TLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSM 735

Query: 241 H 241
            
Sbjct: 736 Q 736



 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 37/211 (17%), Positives = 84/211 (39%), Gaps = 38/211 (18%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----------------------- 106
           ++PT  ++ +L+   ++            Q+ ++GL+                       
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 107 -------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY--AADISTYNILI 151
                        PD F  + +L      G+  + +++L  M +G    + D+  Y+ +I
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVI 226

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           + + + G + K   LF+ +  + + PD VT++S + A  + +   +      +M++ G  
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 286

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           P+  T   LI   SS  Q ++   + + M +
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 317



 Score = 40.0 bits (92), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F EM   GI     ++ ++L    K     +   +  ++    +K +   +N+M+ 
Sbjct: 623 AKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIA 682

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + E+ +++  ++ +      + TY+I+I    + G +E+ E +F S+     +P
Sbjct: 683 GMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 742

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           D     SRL  +  ++L ++      E++ AG Y
Sbjct: 743 D-----SRLLNHVVRELLKK-----NEIVRAGAY 766


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 3/195 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V++EM R+GI P   +  +L   + + G+V K    + +M + G +PD    N++++ Y 
Sbjct: 236 VYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYC 295

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+ +    +   M + +   D+ +Y  L+N   + G + +   LF  +  + L PD+V
Sbjct: 296 RKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIV 355

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + +  Y ++   R    +  EMI +G  PD  T +VLI     E +I     LV  +
Sbjct: 356 SFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVEL 415

Query: 241 HKDMKTALPIYFNLY 255
               +  +PI  ++Y
Sbjct: 416 E---RFGVPISTDIY 427



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 92/184 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +    F ++  +G  P++ S   LL    K   + +C  V  +M + G+ P+++  N + 
Sbjct: 197 EGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILT 256

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +++ + G  +K+ + L  ME+  +  DI TYN LI+ Y R G ++    L++ +  + + 
Sbjct: 257 HVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVL 316

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+V++T+ +    ++   R   ++F  MI  G  PD  +   LI     E ++ +  +L
Sbjct: 317 PDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSL 376

Query: 237 VRTM 240
           +  M
Sbjct: 377 LHEM 380



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 91/201 (45%), Gaps = 9/201 (4%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ AY + G + +      ++ + G  P     N +LN   +L + ++  +V   M + 
Sbjct: 184 MLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARV 243

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               +  T+NIL +++ + G ++K+    + +  +  +PD+VT+ + ++ Y RK      
Sbjct: 244 GIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDA 303

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-RTMHKDMKTALPIYFNLY-- 255
             ++  M      PD  +   L++    E ++ +   L  R +H+ +   + + FN    
Sbjct: 304 FYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDI-VSFNTLIC 362

Query: 256 -----GEKGVARSNLGQYIGN 271
                G+   +RS L + IG+
Sbjct: 363 GYCKEGKMRESRSLLHEMIGS 383



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 35/224 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV----- 111
           +AH +F  M   G+ P + S   L+  Y K G + +   ++++M  SG+ PD        
Sbjct: 337 EAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLI 396

Query: 112 --------INSMLNLYGRLGQFE----------------------KMEEVLTAMEKGSYA 141
                   I S LNL   L +F                         + +L  + +  Y 
Sbjct: 397 EGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYV 456

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
             +  YN LI    +   I     +   +  + +KP  +T+ + +    R         +
Sbjct: 457 PGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESL 516

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
            EEM+ +G  PD    + L+     E  I +  TL++T  K+ +
Sbjct: 517 MEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQ 560



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 56/128 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  V  EM    I P+  ++  L+    +T    + E ++ +M +SG+ PD  +  +
Sbjct: 475 IADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRA 534

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y +     K E +L    K     D  +YN L+  Y       ++  L   +    
Sbjct: 535 LMHVYCKERDIGKAETLLQTFAKEFQIFDSESYNTLVKTYCEDADATRLMELQDRMLKVG 594

Query: 175 LKPDVVTW 182
             P++ T+
Sbjct: 595 FAPNIQTF 602


>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 863

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 1/163 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM   G TP   +++ L+ A++  G  A+   V+ QM   G  P       +L+LYG
Sbjct: 303 LFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYG 362

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+F+ + E+   M + +   D +TYN+L  ++G GGF +++  LFQ +    ++PD+ 
Sbjct: 363 RQGRFDGVRELFREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDID 421

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T  + + A  R  L+    E+ + +   G  P       L+ A
Sbjct: 422 TCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEA 464



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G+ P   S+  ++ A++  GN+++   +  +M  +G  PD      ++  +  +G 
Sbjct: 272 MLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGA 331

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   VL  M+        +TY +L+++YGR G  + +  LF+ +    + PD  T+  
Sbjct: 332 TAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNV 390

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               +     ++  +E+F++M+ +   PD  T + ++ AC
Sbjct: 391 LFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVAC 430



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           + +A+  F  M  +G  PT++++  L  A++K G   + E + ++M + + ++ D    +
Sbjct: 471 YEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFD 530

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  Y +  Q +   +    M K  +  D  +   ++N Y   G I++ +  F+ L + 
Sbjct: 531 ALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSM 590

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              P ++ +   L+ Y+R   +    ++ EEM
Sbjct: 591 VTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 622



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/234 (18%), Positives = 99/234 (42%), Gaps = 18/234 (7%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----VAKCEG 95
           L +T  +  +  +    +A  + ++MK  G+ PT  ++  +L A ++  +         G
Sbjct: 170 LSYTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLG 229

Query: 96  VINQMHKS---GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           +  +M       ++PD    N++L         ++ E +L  M +     D ++Y  +++
Sbjct: 230 LFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVD 289

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            +   G + ++  LF  + A    PD   +   + A++        + +  +M   GC P
Sbjct: 290 AFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPP 349

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP-------IYFNLYGEKG 259
              T +VL+     + + +     VR + ++M+T +P       + F ++G+ G
Sbjct: 350 TAATYRVLLDLYGRQGRFDG----VRELFREMRTTVPPDTATYNVLFRVFGDGG 399



 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/198 (18%), Positives = 85/198 (42%), Gaps = 8/198 (4%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF    +F +   +F++M    + P + +   ++ A  + G       V++ +   G+ P
Sbjct: 394 VFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVP 453

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++   G    +E+       M +      I TYN L N + +GG  ++ E +F
Sbjct: 454 TAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIF 513

Query: 168 QSLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C- 224
             +     ++ D  ++ + + AY +       ++ + EM  +   PD  + + +++A C 
Sbjct: 514 SRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 573

Query: 225 -----SSEDQIEQVTTLV 237
                 S++Q E++ ++V
Sbjct: 574 AGVIDESKEQFEELQSMV 591



 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F EM R  + P   ++ +L   +   G   +   +   M  S ++PD     +
Sbjct: 367 FDGVRELFREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCEN 425

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   GR G  E   EVL  +           Y  L+   G     E+    F  +    
Sbjct: 426 VMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIG 485

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQV 233
             P + T+ +   A+++  L++    IF  M  +A    D  +   LI A     Q++  
Sbjct: 486 SLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDA 545

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 546 VKAYMEMRK 554


>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
 gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 88/161 (54%), Gaps = 1/161 (0%)

Query: 62  FEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           F++MK +    P + ++ +LL A++++G V +   +   +  S + PD +  N +++ YG
Sbjct: 195 FDKMKGMERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYG 254

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  ++ME VLT M       DI T+N+LI+ YG+    EKME  F+SL   + KP + 
Sbjct: 255 KNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLP 314

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           T+ S +  Y + ++  +   +F++M D    P   T + +I
Sbjct: 315 TFNSMIINYGKARMIDKAEWVFKKMNDMNYMPSFITYECMI 355



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 35/233 (15%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L  F  S      +A+F+++    ++P + +   ++ AY K G + + E V+ +M  +  
Sbjct: 215 LRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNEC 274

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KPD    N +++ YG+  +FEKME+   ++ +      + T+N +I  YG+   I+K E 
Sbjct: 275 KPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEW 334

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA----------------- 208
           +F+ +      P  +T+   +  Y       R  EIFEE++D+                 
Sbjct: 335 VFKKMNDMNYMPSFITYECMIMMYGYCGSVSRAREIFEEVVDSERVLKASTLNAMLEVYC 394

Query: 209 --GCY----------------PDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             G Y                PD  T K L  A +  D  E V  L++ M KD
Sbjct: 395 RNGLYMEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEHVQILMKKMEKD 447



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 18/195 (9%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML--NLYGR---------LGQFEKM 128
           L++   K G       + ++M  SG +PD  V N+++  +L+ R          G F+KM
Sbjct: 139 LISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYFDKM 198

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           +     ME+     ++ TYNIL+  + + G ++++  LF+ L    + PDV T+   + A
Sbjct: 199 K----GMERCQ--PNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDA 252

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT-MHKDMKTA 247
           Y +  + +    +   M    C PD  T  VLI +   + + E++    ++ M    K  
Sbjct: 253 YGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPT 312

Query: 248 LPIYFNLYGEKGVAR 262
           LP + ++    G AR
Sbjct: 313 LPTFNSMIINYGKAR 327



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 63/157 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F      F+ + R    PT+ +   ++  Y K   + K E V  +M+     P       
Sbjct: 294 FEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYMPSFITYEC 353

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+ +YG  G   +  E+   +         ST N ++ +Y R G   + + LF +  A R
Sbjct: 354 MIMMYGYCGSVSRAREIFEEVVDSERVLKASTLNAMLEVYCRNGLYMEADKLFHNASAFR 413

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           + PD  T+     AY++  +      + ++M   G +
Sbjct: 414 VHPDASTYKFLYKAYTKADMKEHVQILMKKMEKDGIF 450


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE M R G+  T+ ++  L+ A SK G V + + + ++  + G++PD  + N+++N
Sbjct: 675 ALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 734

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  ++  E++  MEK   A D  TYN L+      G +++   L   +  + ++P
Sbjct: 735 SHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 794

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + ++ YS K   +  L I  EM++ G  P   T   LI       Q +    +V
Sbjct: 795 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 854

Query: 238 RTM 240
           + M
Sbjct: 855 KEM 857



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 82/169 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+E  R GI P +  +  L+ ++S +GN+ +   ++ +M K  + PD    N+++    
Sbjct: 713 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLC 772

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            LG+ ++  +++  M +     D+ TYN LI+ Y   G ++    +   +  K   P ++
Sbjct: 773 LLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLL 832

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           T+ + +    +         + +EM++ G  PD  T   LI   ++ED+
Sbjct: 833 TYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDE 881



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 84/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A+ + EEM   G+ P + ++ +L+  + K GNV K   +   M + G++       ++
Sbjct: 638 TEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTAL 697

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + GQ ++ +++     +     D+  YN LIN +   G I++   +   +  KR+
Sbjct: 698 IYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI 757

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD VT+ + +             ++ +EM + G  PD  T   LIS  S +  ++    
Sbjct: 758 APDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALR 817

Query: 236 LVRTM 240
           +   M
Sbjct: 818 IRNEM 822



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 4/207 (1%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           + M   G+  T+ ++ LL+ A    G   +   ++ +M   GL PD F  N ++N + + 
Sbjct: 610 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE 669

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  +K  E+   M +    A + TY  LI    + G +++ + LF     + ++PD+V +
Sbjct: 670 GNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 729

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-H 241
            + + ++S      R  EI  EM      PD  T   L+       ++++   L+  M  
Sbjct: 730 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 789

Query: 242 KDMKTALPIYFNL---YGEKGVARSNL 265
           + ++  L  Y  L   Y  KG  +  L
Sbjct: 790 RGIQPDLVTYNTLISGYSMKGDVKDAL 816



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 37/219 (16%)

Query: 61  VFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNL 118
           +  EM+ R GI P   ++  +++ + K G V +   V ++M   G +KP+  + N+++  
Sbjct: 536 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGG 595

Query: 119 YGRLGQF-------EKMEEVLTAMEKGSY----------------------------AAD 143
           Y   G+        ++M E   AM   +Y                            A D
Sbjct: 596 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 655

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TYNILIN + + G ++K   +F+++  + ++  VVT+T+ + A S+K   +   ++F+
Sbjct: 656 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFD 715

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           E +  G  PD      LI++ S+   I++   ++  M K
Sbjct: 716 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 754



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  + +EM   GI P + ++  L++ YS  G+V     + N+M   G  P     N++
Sbjct: 778 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 837

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +    + GQ +  E ++  M +     D STY  LI
Sbjct: 838 IQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 873



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 56/127 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM++  I P   ++  L+      G V +   +I++M + G++PD    N++++
Sbjct: 745 AFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLIS 804

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  +    +   M    +   + TYN LI    + G  +  E + + +    + P
Sbjct: 805 GYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITP 864

Query: 178 DVVTWTS 184
           D  T+ S
Sbjct: 865 DDSTYIS 871


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 36/223 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN------------------------- 89
           +  A A+FE MK  G++P++ ++ ++L  Y K G                          
Sbjct: 248 YKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCS 307

Query: 90  --VAKC--EGVINQ-------MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
             ++ C  EG+IN+       +  SG +P T   N++L ++G+ G + +   +L  ME  
Sbjct: 308 TVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDN 367

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +   D  TYN L+  Y R GF E+   +  ++  K + P+ VT+T+ + AY R     + 
Sbjct: 368 NCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKA 427

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           L++F +M  +GC P+  T   +++    + + E++  ++  M 
Sbjct: 428 LQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMR 470



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 86/163 (52%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            FEE+ + G  P M     +L+ ++K     + + +++ + +SGL+PD    NS++N+Y 
Sbjct: 640 AFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYA 699

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+  K EE+L  + K   + D+ +YN +I  + R G +++   +   +  + + P + 
Sbjct: 700 RRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIF 759

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+ + ++ Y+ + ++    E+   MI   C P+  T K+++  
Sbjct: 760 TYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDG 802



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA-------------------------- 91
           A +V  +M+  G  P   S  L+L  Y+K GNV                           
Sbjct: 567 AESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLIL 626

Query: 92  ---KCEGV------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
              KC  V        ++ K+G KPD  + NSML+++ +   +E+ +++L  + +     
Sbjct: 627 ANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQP 686

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+ TYN L+N+Y R G   K E + + L      PD+V++ + +  + R+ L +  + + 
Sbjct: 687 DLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVM 746

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            EM   G  P   T    +S  +      +V  ++  M
Sbjct: 747 SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYM 784



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 103/219 (47%), Gaps = 4/219 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            ++ + ++ +   V + M R G+ P   ++  ++ AY + G   K   + NQM KSG  P
Sbjct: 382 AYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVP 441

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +    NS+L L G+  + E+M ++L+ M       +  T+N L+ + G  G  + +  +F
Sbjct: 442 NVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVF 501

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +     +P   T+ + ++AY R        ++++EM+ AG  P   T   L++A +  
Sbjct: 502 REMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARR 561

Query: 228 DQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKGVAR 262
              +   +++  M     K  +T+  +  + Y + G  R
Sbjct: 562 GDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVR 600



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 3/185 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +S+A  + +EM+    T    ++  L+ AY + G   +   VI+ M + G+
Sbjct: 345 LQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGV 404

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+     +++N YGR G+  K  ++   M+K     ++ TYN ++ + G+    E+M  
Sbjct: 405 MPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIK 464

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +   +      P+ +TW + LA    K  ++    +F EM + G  P   T   LISA  
Sbjct: 465 ILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYG 524

Query: 224 -CSSE 227
            C SE
Sbjct: 525 RCGSE 529



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A   F E+K  G  P   ++  LL  + K G  ++   ++ +M  +    D+   N 
Sbjct: 319 INEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNE 378

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R G +E+   V+  M +     +  TY  +IN YGR G   K   LF  +    
Sbjct: 379 LVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSG 438

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+ S LA   +K      ++I  +M   GC P+  T   L++ C  + + + V 
Sbjct: 439 CVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVN 498

Query: 235 TLVRTM 240
            + R M
Sbjct: 499 HVFREM 504



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 103/242 (42%), Gaps = 36/242 (14%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EMK  G  P   +   L++AY + G+      + ++M K+G  P     N++LN   
Sbjct: 500 VFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALA 559

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG---------------------- 158
           R G ++  E VL  M    +  + ++++++++ Y +GG                      
Sbjct: 560 RRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWV 619

Query: 159 -------------FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
                         +  ME  F+ L     KPD+V + S L+ +++  +Y R  ++ + +
Sbjct: 620 LLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLI 679

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            ++G  PD  T   L++  +   +  +   +++ + K  ++   + +N    KG  R  L
Sbjct: 680 RESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTI-IKGFCRQGL 738

Query: 266 GQ 267
            Q
Sbjct: 739 MQ 740



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + P++ +F  + SI+     +  A  + + ++  G+ P + ++  L+  Y++ G   K E
Sbjct: 649 YKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAE 708

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++  + KSG  PD    N+++  + R G  ++   V++ M        I TYN  ++ Y
Sbjct: 709 EILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGY 768

Query: 155 -GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
            GRG F E ++ +   +  K  KP+ +T+   +  Y + + Y+  ++
Sbjct: 769 AGRGMFAE-VDEVISYMIQKNCKPNELTYKIIVDGYCKARKYQDAMD 814



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 82/181 (45%), Gaps = 2/181 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN-VAKCEGVINQMHKSGLKPDTFVIN 113
           F   +A+F+ +K   +   + S +  L    K+   +   E V++      +K D+  + 
Sbjct: 142 FDSLNALFDSVKSELLEVDIVSLLKALDVLGKSERAILLFEWVVSNSVSGDVKLDSKAVE 201

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M+ + GR  ++    ++L  +    Y+ D+     +++ Y R G  ++   +F+ +   
Sbjct: 202 LMIRILGRESKYSIALKLLDKIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDC 261

Query: 174 RLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            L P +VT+   L  Y +  + + + L++ +EM + G   D  T   +ISAC  E  I +
Sbjct: 262 GLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINE 321

Query: 233 V 233
            
Sbjct: 322 A 322



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 66/163 (40%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  +M+  G  P   +   LL      G       V  +M   G +P     N++++ YG
Sbjct: 465 ILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYG 524

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G      ++   M K  +    +TYN L+N   R G  +  E +   +  K  KP+  
Sbjct: 525 RCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNET 584

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +++  L  Y++    R    I +++ D   +P     + LI A
Sbjct: 585 SFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILA 627


>gi|414888269|tpg|DAA64283.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 616

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  +F EM   G T    +++ L+ A+++ G  A    V+ QM   G  P       
Sbjct: 302 LSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRV 361

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+LYGR G+F+ + ++   M + +   D +TYN+L  ++G GGF +++  LF  +    
Sbjct: 362 LLDLYGRQGRFDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTG 420

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++PD+VT  + +AA     L+    E+ E M   G  P       L+ A
Sbjct: 421 VQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEA 469



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G++P   S+  ++ A++  GN+++   + ++M  +G   D      ++  + R+G 
Sbjct: 277 MLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGA 336

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                 VL  M+    A   +TY +L+++YGR G  + +  LF+ +    + PD  T+  
Sbjct: 337 TADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA-VPPDTATYNV 395

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               +     ++  +E+F +M+  G  PD  T + +++AC
Sbjct: 396 LFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAAC 435



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 100/234 (42%), Gaps = 18/234 (7%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----VAKCEG 95
           L +T  +  +  +    +A A+ ++MK  G+ PT  ++  +L A ++  +         G
Sbjct: 175 LSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLG 234

Query: 96  VINQMHKSG---LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           +  +M       ++PD    N++L         ++ E +L  M +   + D  +Y  +++
Sbjct: 235 LFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVD 294

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            +   G + +   LF  + A     D   +   + A++R       + +  +M   GC P
Sbjct: 295 AFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAP 354

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP-------IYFNLYGEKG 259
              T +VL+     + + +     VR + ++M+TA+P       + F ++G+ G
Sbjct: 355 TAATYRVLLDLYGRQGRFDG----VRQLFREMRTAVPPDTATYNVLFRVFGDGG 404



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 19/202 (9%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----------- 121
           T  S+  L+ AY++     +   +++QM  +G+ P     N++L    R           
Sbjct: 173 TALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDML 232

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           LG F +M    +     S   D++TYN L+         ++ E L  ++    + PD V+
Sbjct: 233 LGLFAEMRHDASP----SVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVS 288

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   + A++      R  E+F EM   G   D      L+ A +          ++R M 
Sbjct: 289 YRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQ 348

Query: 242 KD----MKTALPIYFNLYGEKG 259
            D          +  +LYG +G
Sbjct: 349 ADGCAPTAATYRVLLDLYGRQG 370



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 67/138 (48%), Gaps = 1/138 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           + +A+  F  M  +G  PT++++  L  AY++ G   + E + ++M + +G++      +
Sbjct: 476 YEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFD 535

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  Y +  + +   +    M K  +  D  +   ++N Y   G I++ +  F+ L + 
Sbjct: 536 ALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSS 595

Query: 174 RLKPDVVTWTSRLAAYSR 191
              P V+ +   L+ Y+R
Sbjct: 596 VTMPSVIAYCMMLSLYAR 613



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 1/157 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V E M R G+ PT  ++  L+ A        +     N M + G  P     N++ 
Sbjct: 443 DAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALA 502

Query: 117 NLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
             Y R G F++ E + + M   +       +++ LI  Y +G  ++     +  +   R 
Sbjct: 503 FAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRF 562

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            PD  +    L AY    +     E FEE+  +   P
Sbjct: 563 NPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMP 599



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F EM R  + P   ++ +L   +   G   +   + + M K+G++PD     +
Sbjct: 372 FDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCEN 430

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   G  G      EVL  M +         Y  L+   G     E+    F  +    
Sbjct: 431 VMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIG 490

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQV 233
             P + T+ +   AY+R  L++    IF  M  +AG      +   LI A     +++  
Sbjct: 491 SLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDA 550

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 551 VKAYMEMRK 559



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 49/123 (39%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF    +F +   +F +M + G+ P M +   ++ A    G       V+  M + G+ P
Sbjct: 399 VFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 458

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++   G    +E+       M +      + TYN L   Y RGG  ++ E +F
Sbjct: 459 TADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIF 518

Query: 168 QSL 170
             +
Sbjct: 519 SRM 521


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 1/201 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A     +M + GI P++ ++ LL+ +  K GN+   E +  +M   GL PD    N+
Sbjct: 374 ISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNT 433

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+ G  +K  E+L+ M     + D+ TYNILI+   + G + + + +   L  + 
Sbjct: 434 LMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRG 493

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQV 233
             PDVVT+T+ +  +S K  +     +F  M +    PD  T   L++  C +    E  
Sbjct: 494 FSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEAN 553

Query: 234 TTLVRTMHKDMKTALPIYFNL 254
               + +   +K  + +Y +L
Sbjct: 554 VLFHKMLDAGLKADVILYNSL 574



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 7/201 (3%)

Query: 43  TPNLFVF--IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN+FVF    S   +D     A  VF++M  +G+ P   S+  ++  Y K  +++    
Sbjct: 320 SPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALK 379

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            + +M K G++P       +++   + G  E  E +   M       D+ +YN L+N YG
Sbjct: 380 YLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYG 439

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G ++K   L   + +  + PD+VT+   +    ++ L     +I +E+   G  PD  
Sbjct: 440 KKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVV 499

Query: 216 TAKVLISACSSEDQIEQVTTL 236
           T   +I   S++   E+   L
Sbjct: 500 TFTNIIGGFSNKGNFEEAFLL 520



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 96/200 (48%), Gaps = 7/200 (3%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EMK LGI P + ++ +++ +  K   + +   ++ +M + G+  D+  ++S+++ Y ++G
Sbjct: 246 EMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVG 305

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
              K EE +  +E  + + +I  +N  I+     G + K   +FQ +    L PD  ++T
Sbjct: 306 ---KSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYT 362

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + +A Y + K     L+   +M+  G  P   T  +LI +C     +E    L + M  +
Sbjct: 363 TMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITE 422

Query: 244 MKTALPIYFNL----YGEKG 259
                 + +N     YG+KG
Sbjct: 423 GLVPDVVSYNTLMNGYGKKG 442



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 73/168 (43%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +   M+  G++P + ++ +L+    K G V + + +++++ + G  PD     
Sbjct: 443 HLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFT 502

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  +   G FE+   +   M +     D+ T + L+N Y R   + +   LF  +   
Sbjct: 503 NIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDA 562

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            LK DV+ + S +  +           +   MI+ G  P+  T   L+
Sbjct: 563 GLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALV 610



 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 61/137 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  + +E+ R G +P + +   ++  +S  GN  +   +   M +  L+PD    +++
Sbjct: 480 NEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSAL 539

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LN Y R     +   +   M      AD+  YN LI+ +   G I+    L   +    +
Sbjct: 540 LNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGI 599

Query: 176 KPDVVTWTSRLAAYSRK 192
            P+ +T  + +  Y +K
Sbjct: 600 MPNNITHHALVLGYEKK 616


>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 808

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  +     +S A + FE MK   I P   +  +++    K G   K   + N
Sbjct: 248 LVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFN 307

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   ++  +PD     S+++LY   GQ E  + V + M        I +YN LI  Y  
Sbjct: 308 SMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAF 367

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  E+   +F+ + A  L PDVV++TS L++Y R K  ++  E+F  M  A   P+  +
Sbjct: 368 HGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVS 427

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   +     ++R M +D
Sbjct: 428 FNALIDAYGSNGLLADAVKVLREMEQD 454



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 102/212 (48%), Gaps = 6/212 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  V ++M   G+ P + +H ++L+AY      +K       M  + ++PDT   N 
Sbjct: 229 WREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNI 288

Query: 115 MLNLYGRLGQFEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++    +LGQ EK  ++  +M  ++     DI T+  +I++Y   G +E  + +F ++ A
Sbjct: 289 VIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLA 348

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + L P +V++ + + AY+   +    L +F+++  +G  PD  +   L+S+     Q ++
Sbjct: 349 EGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKK 408

Query: 233 VTTLVRTMHKDMKTALPIYFN----LYGEKGV 260
              +   M K       + FN     YG  G+
Sbjct: 409 AREMFNMMKKAKLKPNVVSFNALIDAYGSNGL 440



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++  T  + ++  S    +  AVF  M   G+TPT+ S+  L+ AY+  G   +   V  
Sbjct: 320 IVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAFHGMSEEALSVFK 379

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           ++  SGL PD     S+L+ YGR  Q +K  E+   M+K     ++ ++N LI+ YG  G
Sbjct: 380 KIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNALIDAYGSNG 439

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            +     + + +    + P++VT  + LAA  R
Sbjct: 440 LLADAVKVLREMEQDGIHPNIVTICTLLAACGR 472



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 2/166 (1%)

Query: 61  VFEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           +F  M  KR    P + +   ++  YS +G V  C+ V + M   GL P     N+++  
Sbjct: 305 IFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGA 364

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           Y   G  E+   V   ++      D+ +Y  L++ YGR    +K   +F  +   +LKP+
Sbjct: 365 YAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPN 424

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           VV++ + + AY    L    +++  EM   G +P+  T   L++AC
Sbjct: 425 VVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAAC 470



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 81/168 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VF+++K  G+ P + S+  LL++Y ++    K   + N M K+ LKP+    N+++
Sbjct: 373 EALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNALI 432

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YG  G      +VL  ME+     +I T   L+   GR G    ++ +  +   + +K
Sbjct: 433 DAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIK 492

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            + V   S + +Y     Y + + ++  M      P+  T  VLIS C
Sbjct: 493 LNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLISGC 540



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  MK+  + P + S   L+ AY   G +A    V+ +M + G+ P+   I ++L 
Sbjct: 409 AREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLA 468

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR GQ   ++ VL+A +      +    N  I  Y   G  EK   L+ S+   ++ P
Sbjct: 469 ACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAP 528

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + VT+T  ++   +   Y + +E F +M++            +I A S + QI +  ++ 
Sbjct: 529 NSVTYTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIF 588

Query: 238 RTM 240
             M
Sbjct: 589 TMM 591



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 36/236 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  V  EM++ GI P + +   LL A  + G     + V++     G+K +T   NS
Sbjct: 441 LADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNS 500

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN---------------------- 152
            +  Y  +G++EK   +  +M K   A +  TY +LI+                      
Sbjct: 501 AIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLISGCCKMSKYGKAIEFFADMMELK 560

Query: 153 -------------IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                         Y + G I + E +F  +      PD++T+T+ L AY+  + + +  
Sbjct: 561 IALTKEVCSSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAYNAGEHWGKAC 620

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNL 254
           ++ +EM D     D      L+ A +      QV  L   M  K++  +  I+F +
Sbjct: 621 DLIQEMEDYDIQLDTIACSALMRAFNKRGNPSQVLILAEFMKEKEIPFSDAIFFEM 676



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 75/171 (43%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++     +  G+  +M +   KPD+   N+++N +GR GQ+     ++  M + 
Sbjct: 148 MMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHGRAGQWRWAMNIMEDMLRE 207

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     STYN LIN  G  G   +   + + +    + PD+VT    L+AY     Y + 
Sbjct: 208 AIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKA 267

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           L  FE M      PD  T  ++I       Q E+   +  +M +      P
Sbjct: 268 LSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAECRP 318



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 6/200 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+     P  +++  L+ A+ + G       ++  M +  + P     N+++N
Sbjct: 162 ARGLFFEMQEWRCKPDSETYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLIN 221

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G  G + +  +V   M +     D+ T+NI+++ Y  G    K    F+ +    ++P
Sbjct: 222 ACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRP 281

Query: 178 DVVTWTSRLAAYSRKKLYR--RCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIEQV 233
           D  T T  +  Y   KL +  + ++IF  M +  A C PD  T   +I   S   Q+E  
Sbjct: 282 D--TTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENC 339

Query: 234 TTLVRTMHKDMKTALPIYFN 253
             +  TM  +  T   + +N
Sbjct: 340 KAVFSTMLAEGLTPTIVSYN 359



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%)

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +Y A    YN++I ++ R    ++  GLF  +   R KPD  T+ + + A+ R   +R  
Sbjct: 138 NYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHGRAGQWRWA 197

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + I E+M+     P   T   LI+AC S     +   + + M ++
Sbjct: 198 MNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTEN 242



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 35/196 (17%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A ++F  MK  G  P + +   +L AY+   +  K   +I +M    ++ DT   ++
Sbjct: 581 ITEAESIFTMMKMAGCCPDIITFTAMLHAYNAGEHWGKACDLIQEMEDYDIQLDTIACSA 640

Query: 115 MLNLYGR---------LGQFEKMEEV--------------------------LTAMEKGS 139
           ++  + +         L +F K +E+                          +  ME   
Sbjct: 641 LMRAFNKRGNPSQVLILAEFMKEKEIPFSDAIFFEMVSACSLLRDWRTILNLMKLMEPSF 700

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
               I   N L+++ GR G IE M  LF  + A   + +  T++  L        +R+ +
Sbjct: 701 SVVSIGLLNQLLHVLGRSGKIESMMKLFYKITASGAEINFNTYSIMLKNLLAVGNWRKYI 760

Query: 200 EIFEEMIDAGCYPDGG 215
           E+ E M DAG  P  G
Sbjct: 761 EVLEWMEDAGIQPSIG 776



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 54/115 (46%)

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           T + N M+ L+ R    ++   +   M++     D  TYN LIN +GR G       + +
Sbjct: 143 TDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHGRAGQWRWAMNIME 202

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +  + + P   T+ + + A      +R  L++ ++M + G  PD  T  +++SA
Sbjct: 203 DMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSA 257



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 81/201 (40%), Gaps = 3/201 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A   F +M  L I  T +    ++ AYSK G + + E +   M  +G  PD     +
Sbjct: 546 YGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTA 605

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+ Y     + K  +++  ME      D    + L+  + + G   ++  L + +  K 
Sbjct: 606 MLHAYNAGEHWGKACDLIQEMEDYDIQLDTIACSALMRAFNKRGNPSQVLILAEFMKEKE 665

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +      +   ++A S  + +R  L + + M  +      G    L+       +IE   
Sbjct: 666 IPFSDAIFFEMVSACSLLRDWRTILNLMKLMEPSFSVVSIGLLNQLLHVLGRSGKIE--- 722

Query: 235 TLVRTMHKDMKTALPIYFNLY 255
           ++++  +K   +   I FN Y
Sbjct: 723 SMMKLFYKITASGAEINFNTY 743


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 1/176 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH  F  ++  G T ++ +   L+ +  + G V    GV  ++ +SG+  + + +N M+
Sbjct: 183 EAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMV 242

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   + G+ EK+   L+ +++     DI TYN LI+ Y   G +E+   L  ++P K   
Sbjct: 243 NALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFS 302

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSEDQIE 231
           P V T+ + +    +   Y R  E+F EM+ +G  PD  T + +L+ AC   D +E
Sbjct: 303 PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE 358



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  VF EM R G++P   ++  LL    K G+V + E V + M    + PD    +S
Sbjct: 321 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSS 380

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++L+ R G  +K      ++++     D   Y ILI  Y R G I     L   +  + 
Sbjct: 381 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              DVVT+ + L    ++K+     ++F EM +   +PD  T  +LI        ++   
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAM 500

Query: 235 TLVRTMHK 242
            L + M +
Sbjct: 501 ELFQKMKE 508



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 2/177 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ +M    I PT  S+ +L+ A    G++A+   V ++M    +KP   + NSM+ 
Sbjct: 534 AKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIK 593

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--L 175
            Y R G     E  L  M    +  D  +YN LI  + R   + K  GL + +  ++  L
Sbjct: 594 GYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGL 653

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            PDV T+ S L  + R+   +    +  +MI+ G  PD  T   +I+   S+D + +
Sbjct: 654 VPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTE 710



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 83/162 (51%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
             +++  G+ P + ++  L++AYS  G + +   ++N M   G  P  +  N+++N   +
Sbjct: 258 LSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCK 317

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G++E+ +EV   M +   + D +TY  L+    + G + + E +F  + ++ + PD+V 
Sbjct: 318 HGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVC 377

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++S ++ ++R     + L  F  + +AG  PD     +LI  
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 86/198 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EM    + P   +  +L+  + K GN+     +  +M +  ++ D    N+
Sbjct: 461 LGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNT 520

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ +G++G  +  +E+   M          +Y+IL+N     G + +   ++  + +K 
Sbjct: 521 LLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKN 580

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP V+   S +  Y R           E+MI  G  PD  +   LI     E+ + +  
Sbjct: 581 IKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAF 640

Query: 235 TLVRTMHKDMKTALPIYF 252
            LV+ M ++    +P  F
Sbjct: 641 GLVKKMEEEQGGLVPDVF 658



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V++E+ R G+   + +  +++ A  K G + K    ++Q+ + G+ PD    N++++
Sbjct: 219 AWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLIS 278

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E+  E++ AM    ++  + TYN +IN   + G  E+ + +F  +    L P
Sbjct: 279 AYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSP 338

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D  T+ S L    +K       ++F +M      PD
Sbjct: 339 DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPD 374



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 12/167 (7%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++A  V++EM    I PT+     ++  Y ++GN +  E  + +M   G  PD    N
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYN 624

Query: 114 SML-------NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           +++       N+    G  +KMEE     E+G    D+ TYN +++ + R   +++ E +
Sbjct: 625 TLIYGFVREENMSKAFGLVKKMEE-----EQGGLVPDVFTYNSILHGFCRQNQMKEAEVV 679

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            + +  + + PD  T+T  +  +  +        I +EM+  G  PD
Sbjct: 680 LRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +   M   G +P + ++  ++    K G   + + V  +M +SGL PD+    S+L
Sbjct: 288 EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 347

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               + G   + E+V + M       D+  ++ +++++ R G ++K    F S+    L 
Sbjct: 348 MEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLI 407

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD V +T  +  Y RK +    + +  EM+  GC  D  T   ++        + +   L
Sbjct: 408 PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 467

Query: 237 VRTM 240
              M
Sbjct: 468 FNEM 471



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 3/217 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           +F  S     A   F  +K  G+ P    + +L+  Y + G ++    + N+M + G   
Sbjct: 384 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAM 443

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D    N++L+   +     + +++   M + +   D  T  ILI+ + + G ++    LF
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELF 503

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSS 226
           Q +  KR++ DVVT+ + L  + +        EI+ +M+     P   +  +L++A CS 
Sbjct: 504 QKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSK 563

Query: 227 EDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARS 263
               E        + K++K  + I  ++   KG  RS
Sbjct: 564 GHLAEAFRVWDEMISKNIKPTVMICNSMI--KGYCRS 598



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 4/163 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHK--SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           LL    ++G V++ E ++N +    S    +  V + ++  Y +  +  +  E  T +  
Sbjct: 136 LLRMIRRSG-VSRLE-IVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRS 193

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
             +   I   N LI    R G++E   G++Q +    +  +V T    + A  +     +
Sbjct: 194 KGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEK 253

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                 ++ + G YPD  T   LISA SS+  +E+   L+  M
Sbjct: 254 VGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM 296


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 96/196 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+  G TP + ++ +L+    K G + +    +N M  SG +P+    N +L 
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++   E++L  M +  ++  + T+NILIN   R G + +   + + +P    +P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +++   L  + ++K   R +E  E M+  GCYPD  T   +++A   + ++E    ++
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 238 RTMHKDMKTALPIYFN 253
             +     + + I +N
Sbjct: 438 NQLSSKGCSPVLITYN 453



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E M   G  P +     L+  + + G   K   ++  +  SG  PD    N M++ Y +
Sbjct: 125 LENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCK 184

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+   +   L+ +++ S + D+ TYN ++      G +++   +   +  +   PDV+T
Sbjct: 185 AGE---INNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +T  + A  R       +++ +EM D GC PD  T  VL++    E ++++    +  M
Sbjct: 242 YTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 11/244 (4%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L + L    +P++  F   I F         A  + E+M + G  P   S+  LL  + 
Sbjct: 331 LLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFC 390

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K   + +    + +M   G  PD    N+ML    + G+ E   E+L  +     +  + 
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLI 450

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN +I+   + G   K   L   + AK LKPD +T++S +   SR+      ++ F E 
Sbjct: 451 TYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF 510

Query: 206 IDAGCYPDGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMK---TALPIYFNLYGEKGVA 261
              G  P+  T   +++  C S      +  LV  +++  K   T+  I       +G+A
Sbjct: 511 ERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMA 570

Query: 262 RSNL 265
           +  L
Sbjct: 571 KEAL 574



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 84/201 (41%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L + P L  F        A    E M   G  P + ++  +LTA  K G V     ++NQ
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +   G  P     N++++   + G+  K  ++L  M       D  TY+ L+    R G 
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++    F       ++P+ VT+ S +    + +   R ++    MI+ GC P+  +  +
Sbjct: 500 VDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTI 559

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI   + E   ++   L+  +
Sbjct: 560 LIEGLAYEGMAKEALELLNEL 580



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 3/169 (1%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           +TG + +    +  M   G  PD     +++  + RLG+  K  ++L  +E      D+ 
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN++I+ Y + G I     +   +    + PDVVT+ + L +       ++ +E+ + M
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           +   CYPD  T  +LI A   +  +     L+  M     T   + +N+
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 86/177 (48%), Gaps = 2/177 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +M R G +P++ +  +L+    + G + +   ++ +M + G +P++   N +L
Sbjct: 327 DAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLL 386

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + + +  + ++  E L  M  +G Y  DI TYN ++    + G +E    +   L +K  
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRGCYP-DIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            P ++T+ + +   ++     + +++ +EM      PD  T   L+   S E ++++
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 5/198 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E ++  G  P + ++ ++++ Y K G +     V+++M  S   PD    N++L 
Sbjct: 156 AAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILR 212

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ ++  EVL  M +     D+ TY ILI    R   +     L   +  +   P
Sbjct: 213 SLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTP 272

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSSEDQIEQVTTL 236
           DVVT+   +    ++      ++   +M  +GC P+  T  +++ S CS+   ++    L
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332

Query: 237 VRTMHKDMKTALPIYFNL 254
              + K    ++ + FN+
Sbjct: 333 ADMLRKGFSPSV-VTFNI 349



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 78/183 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V + M +    P + ++ +L+ A  +   V     ++++M   G  PD    N ++N
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN 282

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  + L  M       ++ T+NI++      G     E L   +  K   P
Sbjct: 283 GICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP 342

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            VVT+   +    RK L  R ++I E+M   GC P+  +   L+     E ++++    +
Sbjct: 343 SVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYL 402

Query: 238 RTM 240
             M
Sbjct: 403 ERM 405



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/158 (18%), Positives = 69/158 (43%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           + R+ ++P + ++  +L +   +G + +   V+++M +    PD      ++    R   
Sbjct: 195 LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG 254

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                ++L  M       D+ TYN+L+N   + G +++       +P+   +P+V+T   
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            L +      +    ++  +M+  G  P   T  +LI+
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 116/266 (43%), Gaps = 39/266 (14%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           +T  + + I+      A  + +EM+   I   + ++  L+    K GN        N M 
Sbjct: 213 YTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHMR 272

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME------------------------- 136
           + G  P+    N+++++YG++G +E+  +VLT M+                         
Sbjct: 273 QDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPR 332

Query: 137 ----------KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
                        Y+ + +TYN LI+ YG+ G ++K+  +FQ +  K  +  V+T++S +
Sbjct: 333 EAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLI 392

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
           +A  +   +   LE+F EM   GC P+  T   LI+AC+   Q E+ + +   M K   T
Sbjct: 393 SACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCT 452

Query: 247 ALPIYFNL----YGEKGVARSNLGQY 268
              + F      Y + G  R  LG Y
Sbjct: 453 PDVVTFTALISSYEKGGQWRRALGAY 478



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AV++ M   G +P   ++  L++AY K G + K   V  +M   G +      +S++
Sbjct: 333 EAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLI 392

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + GQ+E   E+   M       +  TYN LI    +G   EK   +F+ +      
Sbjct: 393 SACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCT 452

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           PDVVT+T+ +++Y +   +RR L  +E+M    C PD
Sbjct: 453 PDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPD 489



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+EM   G   ++ ++  L++A  K G       + N+M   G  P+T   NS++    
Sbjct: 372 VFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACA 431

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  Q+EK  EV   M+KG    D+ T+  LI+ Y +GG   +  G ++ +  +R KPD +
Sbjct: 432 QGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAI 491

Query: 181 TWTSRLAAYSRKKL---YRRCLEIFEEMIDAG 209
            + + +       +    R+ L +F++ ++ G
Sbjct: 492 VFNAIIDTLWETGVIWAQRKALALFQQAVEDG 523



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  VFE+M++ G TP + +   L+++Y K G   +  G   QM     KPD  V N+
Sbjct: 436 WEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNA 495

Query: 115 MLNLYGRLGQFEKMEEVLT----AMEKGSY 140
           +++     G      + L     A+E G +
Sbjct: 496 IIDTLWETGVIWAQRKALALFQQAVEDGHF 525


>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 100/204 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VFEEM   G+ PT K++ +LL A++ +G V + + V   M +  + PD +   +ML
Sbjct: 332 EALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTML 391

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y      E  E+    ++   +  +I TY  LI  Y +   +EKM  +++ +    +K
Sbjct: 392 SAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIK 451

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +    T+ + A  R K +   L  ++EM   G  PD     VL+S  S++D++E+   L
Sbjct: 452 ANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 511

Query: 237 VRTMHKDMKTALPIYFNLYGEKGV 260
               ++       +Y +   E+GV
Sbjct: 512 TGIRNETATIIARVYGSDDDEEGV 535



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 70/236 (29%)

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG-------------- 123
           ++L+TAY K GN    E V++ + K G  P+     +++  YGR G              
Sbjct: 143 LMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQS 202

Query: 124 ---------------------QFEKMEEVLTAM---EKGSYAADISTYNILINIYGRGGF 159
                                +F++ EEV   +   +K     D   Y+++I +Y + G 
Sbjct: 203 SGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGN 262

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLA-------------------------------- 187
            EK   +F S+  K +    VT+ S ++                                
Sbjct: 263 YEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIK 322

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           AY R +     L +FEEM+DAG  P      +L+ A +    +EQ  T+ ++M +D
Sbjct: 323 AYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD 378



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 35/231 (15%)

Query: 46  LFVFIFSIYFSDAHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI----- 97
           L  F+    F +A  VFE +   K+  + P  K + +++  Y K GN  K   V      
Sbjct: 216 LKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVG 275

Query: 98  ---------------------------NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
                                      +QM +S ++PD      ++  YGR  + E+   
Sbjct: 276 KGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALS 335

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           V   M           YNIL++ +   G +E+ + +F+S+   R+ PD+ ++T+ L+AY 
Sbjct: 336 VFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYV 395

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
                    + F+ +   G  P+  T   LI   +  + +E++  +   M 
Sbjct: 396 NASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 446



 Score = 41.2 bits (95), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 51/115 (44%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  L  ++ +     A   F+ +K  G  P + ++  L+  Y+K  +V K   V  
Sbjct: 384 LWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYE 443

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M  SG+K +  ++ ++++  GR   F         ME      D    N+L+++
Sbjct: 444 KMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSL 498


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 95/187 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+E+   G  P   ++  LL A++K G+V + E V  ++ K+G + D    N+M+
Sbjct: 186 EAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMI 245

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++YG++G+ +    +   M       D  TY +L++  G+   I +   + + +    LK
Sbjct: 246 HMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLK 305

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +VT+++ + AY++          F+ M+++G  PD     V++   +  D+  ++  L
Sbjct: 306 PTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVL 365

Query: 237 VRTMHKD 243
            R M KD
Sbjct: 366 YRAMIKD 372



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA AVFEEM      P + ++  +++ + + G   + E +  ++ + G +PD    NS
Sbjct: 149 LDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNS 208

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + + G  E++E V   + K  +  D  TYN +I++YG+ G ++   GL+  + A  
Sbjct: 209 LLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIG 268

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             PD VT+T  + +  +        ++ EEM DAG  P   T   LI A
Sbjct: 269 CTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICA 317



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 10/209 (4%)

Query: 22  NFNYLPYPSHFMLINFLLLQHTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTM 74
           +F+Y P     +    L   H P + VF  +  +Y     F DA  + + M+   I P +
Sbjct: 38  DFDY-PLADPSVRWPHLRFPHLPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDL 96

Query: 75  KSHMLLLTAYSKTGNVAKCEG--VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL 132
            S   L+ A +K+G +A      +++++ ++GL+PD    N++++   +    +    V 
Sbjct: 97  VSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVF 156

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D+ TYN +++++GR G  ++ E +F+ L  K  +PD VT+ S L A++++
Sbjct: 157 EEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKE 216

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
               R   + EE++ AG   DG T   +I
Sbjct: 217 GDVERVERVCEELVKAGFRKDGITYNTMI 245



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 93/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  E+++ G+ P   ++  L++A S+  N+     V  +M  S  +PD +  N+M++
Sbjct: 117 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 176

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++GR G+ ++ E +   + +  +  D  TYN L+  + + G +E++E + + L     + 
Sbjct: 177 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 236

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y +       L +++EM   GC PD  T  VL+ +    D+I +   ++
Sbjct: 237 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 296

Query: 238 RTM 240
             M
Sbjct: 297 EEM 299



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  V EEM   G+ PT+ +   L+ AY+K+G     E   ++M +SG+KPD      
Sbjct: 289 ISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLV 348

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK- 173
           ML+++ R  +  K+  +  AM K  Y  D   Y +L+    +G   +++EG+ Q + A  
Sbjct: 349 MLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVF 408

Query: 174 RLKPDVVT---WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            + P V++     +   +     L R CL+ +E        PDG +   ++ A
Sbjct: 409 EMNPLVISSILIKAECISQGASLLKRACLQGYE--------PDGKSLLSILDA 453



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 55  FSDAHAVFE------EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+ A  VFE       MK  G  P M  + ++++           E ++ +M  +G KPD
Sbjct: 702 FAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPD 761

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
             V+N++L +Y   G F++  EV  ++ +     D  TYN LI +Y R    E+   L  
Sbjct: 762 LVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLY 821

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +  + L P + ++   LAA  + KL+ +   +FEEM   G
Sbjct: 822 EMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKG 862



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 93/203 (45%), Gaps = 6/203 (2%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK--ME 129
           PT++    ++  Y+++G       +++ M    ++PD    N+++N   + G        
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL 118

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           E+L  + +     D  TYN LI+   +G  ++    +F+ + A   +PD+ T+ + ++ +
Sbjct: 119 ELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVH 178

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
            R    +    +F+E+++ G  PD  T   L+ A + E  +E+V  +   + K       
Sbjct: 179 GRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDG 238

Query: 250 IYFN----LYGEKGVARSNLGQY 268
           I +N    +YG+ G     LG Y
Sbjct: 239 ITYNTMIHMYGKMGRLDLALGLY 261



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 2/188 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             + + V +E++ L I  +  + +L+L A++K G+V +   + N M  +G  P+  +   
Sbjct: 673 LDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRI 732

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY-GRGGFIEKMEGLFQSLPAK 173
           M++L     +F  +E ++  ME   +  D+   N L+ +Y G G F   +E ++ S+   
Sbjct: 733 MISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIE-VYHSILEA 791

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L+PD  T+ + +  YSR         +  EM   G  P   + K+L++A       EQ 
Sbjct: 792 GLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQA 851

Query: 234 TTLVRTMH 241
             L   M 
Sbjct: 852 DLLFEEMR 859



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 85/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A A+F+ M + G  PT++S   ++ A    G + +   V+ ++    +K     +  
Sbjct: 638 YEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLL 697

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML  + + G   ++ ++   M+   Y  ++  Y I+I++         +E +   +    
Sbjct: 698 MLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAG 757

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KPD+V   + L  Y+    + R +E++  +++AG  PD  T   LI   S   + E+  
Sbjct: 758 FKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGF 817

Query: 235 TLVRTMHK 242
           TL+  M K
Sbjct: 818 TLLYEMGK 825



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 72/148 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EM+ +G TP   ++ +L+ +  K   +++   V+ +M  +GLKP     ++++ 
Sbjct: 257 ALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALIC 316

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+ +  E     M +     D   Y ++++++ R     K+  L++++     KP
Sbjct: 317 AYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKP 376

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           D   +   LAA ++   +     + ++M
Sbjct: 377 DDGLYQVLLAALAKGNEHDEIEGVIQDM 404



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 3/195 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F D   +  EM+  G  P +     LL  Y+ TGN  +   V + + ++GL+PD    N+
Sbjct: 743 FRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNT 802

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +Y R  + E+   +L  M K      + +Y IL+   G+    E+ + LF+ +  K 
Sbjct: 803 LIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKG 862

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIE 231
            + +   +   +  Y   + + +   +   M + G  P   T  +L+++  +    D+ E
Sbjct: 863 YRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAE 922

Query: 232 QVTTLVRTMHKDMKT 246
           +V   +++ + ++ T
Sbjct: 923 KVLNSLKSSNLEIST 937



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +FEEM+  G       + +++  Y    N +K E +++ M + G++P    ++ 
Sbjct: 848 WEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHI 907

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  YG  G  ++ E+VL +++  +       Y+ +++ Y R    +   G+ + L  KR
Sbjct: 908 LMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNR--DYSLGITKLLEMKR 965

Query: 175 --LKPDVVTWTSRLAAYS 190
             ++PD   WTS + A S
Sbjct: 966 DGVEPDHQVWTSFIRAAS 983


>gi|115456295|ref|NP_001051748.1| Os03g0824100 [Oryza sativa Japonica Group]
 gi|113550219|dbj|BAF13662.1| Os03g0824100, partial [Oryza sativa Japonica Group]
          Length = 691

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 1/163 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM   G TP   +++ L+ A++  G  A+   V+ QM   G  P       +L+LYG
Sbjct: 131 LFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYG 190

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+F+ + E+   M + +   D +TYN+L  ++G GGF +++  LFQ +    ++PD+ 
Sbjct: 191 RQGRFDGVRELFREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDID 249

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T  + + A  R  L+    E+ + +   G  P       L+ A
Sbjct: 250 TCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEA 292



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G+ P   S+  ++ A++  GN+++   +  +M  +G  PD      ++  +  +G 
Sbjct: 100 MLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGA 159

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   VL  M+        +TY +L+++YGR G  + +  LF+ +    + PD  T+  
Sbjct: 160 TAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNV 218

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               +     ++  +E+F++M+ +   PD  T + ++ AC
Sbjct: 219 LFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVAC 258



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           + +A+  F  M  +G  PT++++  L  A++K G   + E + ++M + + ++ D    +
Sbjct: 299 YEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFD 358

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  Y +  Q +   +    M K  +  D  +   ++N Y   G I++ +  F+ L + 
Sbjct: 359 ALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSM 418

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              P ++ +   L+ Y+R   +    ++ EEM
Sbjct: 419 VTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 450



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/233 (18%), Positives = 95/233 (40%), Gaps = 31/233 (13%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGV 96
           L +T  +  +  +    +A  + ++MK  G+ PT   +   MLL              G+
Sbjct: 13  LSYTSLIAAYARNALHEEARELLDQMKASGVAPTDPPVPFDMLL--------------GL 58

Query: 97  INQMHKS---GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             +M       ++PD    N++L         ++ E +L  M +     D ++Y  +++ 
Sbjct: 59  FAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDA 118

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +   G + ++  LF  + A    PD   +   + A++        + +  +M   GC P 
Sbjct: 119 FAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPT 178

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP-------IYFNLYGEKG 259
             T +VL+     + + +     VR + ++M+T +P       + F ++G+ G
Sbjct: 179 AATYRVLLDLYGRQGRFDG----VRELFREMRTTVPPDTATYNVLFRVFGDGG 227



 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 37/198 (18%), Positives = 85/198 (42%), Gaps = 8/198 (4%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF    +F +   +F++M    + P + +   ++ A  + G       V++ +   G+ P
Sbjct: 222 VFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVP 281

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++   G    +E+       M +      I TYN L N + +GG  ++ E +F
Sbjct: 282 TAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIF 341

Query: 168 QSLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C- 224
             +     ++ D  ++ + + AY +       ++ + EM  +   PD  + + +++A C 
Sbjct: 342 SRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 401

Query: 225 -----SSEDQIEQVTTLV 237
                 S++Q E++ ++V
Sbjct: 402 AGVIDESKEQFEELQSMV 419



 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F EM R  + P   ++ +L   +   G   +   +   M  S ++PD     +
Sbjct: 195 FDGVRELFREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCEN 253

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   GR G  E   EVL  +           Y  L+   G     E+    F  +    
Sbjct: 254 VMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIG 313

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQV 233
             P + T+ +   A+++  L++    IF  M  +A    D  +   LI A     Q++  
Sbjct: 314 SLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDA 373

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 374 VKAYMEMRK 382


>gi|326487288|dbj|BAJ89628.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 461

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 104/206 (50%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M   G+    +++MLLL AY++ G +     V+ +M + G++ DT   ++++ 
Sbjct: 141 ADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGYSTLVR 200

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LY   G ++K  +++  M++     D+  YN LI+ +G+ G +     +F+ +  + +KP
Sbjct: 201 LYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRGQGIKP 260

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ TW + +  + R    +R L     M + G YPD      +I+    + + +++  L 
Sbjct: 261 DIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINRLGEQGKWDELKELF 320

Query: 238 RTM-HKDMKTALPIY---FNLYGEKG 259
             M ++  K +  IY    ++YG+ G
Sbjct: 321 DKMRNRGFKESGAIYAVLVDIYGQYG 346



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 91/184 (49%), Gaps = 2/184 (1%)

Query: 45  NLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           N  +  F  Y   +DA  +FE+M+  GI P +++   L+  + + GN+ +    +  M +
Sbjct: 231 NGLIDTFGKYGQLADARKMFEKMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQE 290

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G+ PD  +  +++N  G  G++++++E+   M    +    + Y +L++IYG+ G    
Sbjct: 291 EGMYPDPKIFITIINRLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRD 350

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            +    +L A+ L+     +     AY+++ L  + + + + M   G  P+     +LI+
Sbjct: 351 AQECVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLIN 410

Query: 223 ACSS 226
           A S+
Sbjct: 411 AFST 414



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 98/247 (39%), Gaps = 16/247 (6%)

Query: 30  SHFMLINFLLLQHTPN-------LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSH 77
           +H  L + LLLQ   +        ++ +   Y       D+  V  EMKR GI      +
Sbjct: 136 AHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGY 195

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
             L+  Y  +G   K   +I +M + G++ D  + N +++ +G+ GQ     ++   M  
Sbjct: 196 STLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRG 255

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                DI T+N LI  + R G +++      ++  + + PD   + + +     +  +  
Sbjct: 256 QGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINRLGEQGKWDE 315

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF----N 253
             E+F++M + G    G    VL+               V  +  +     P  F    N
Sbjct: 316 LKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLAN 375

Query: 254 LYGEKGV 260
            Y ++G+
Sbjct: 376 AYAQQGL 382



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 5/159 (3%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +F+ I +       + +   +F++M+  G   +   + +L+  Y + G+    +  + 
Sbjct: 297 PKIFITIINRLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVA 356

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +    L+    +   + N Y + G  E+   VL  ME      ++   N+LIN +   G
Sbjct: 357 ALKAENLQLSPSIFCVLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAG 416

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
              + + +FQ +    + PDVVT+T+ + A+ R K Y +
Sbjct: 417 RHLEAQAVFQHIKDSGMSPDVVTYTTLMKAFMRVKRYEK 455



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 69/153 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  +M+  G+ P+  ++  L+ A ++ G   + E ++ +M   GL+PD    N++L    
Sbjct: 74  LLADMQAAGMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYNALLEGLL 133

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
                   + +L  M     A +  TY +L++ Y R G +E    +   +    ++ D  
Sbjct: 134 ARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTA 193

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +++ +  Y    ++++  ++  EM + G   D
Sbjct: 194 GYSTLVRLYRDSGMWKKATDLIMEMQEVGVELD 226



 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 6/126 (4%)

Query: 46  LFVFIFSIY--FSDAHAVFEEMK--RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           + V I+  Y  F DA      +K   L ++P++    +L  AY++ G   +   V+  M 
Sbjct: 337 VLVDIYGQYGHFRDAQECVAALKAENLQLSPSI--FCVLANAYAQQGLCEQTVSVLQLME 394

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
             G++P+  ++N ++N +   G+  + + V   ++    + D+ TY  L+  + R    E
Sbjct: 395 AEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIKDSGMSPDVVTYTTLMKAFMRVKRYE 454

Query: 162 KMEGLF 167
           K+  L+
Sbjct: 455 KVRLLY 460


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 98/192 (51%), Gaps = 2/192 (1%)

Query: 42  HTPNLFVFIFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +T N+F+  F        AV  FE+MK  GI P + +    L + ++ G + + + + N 
Sbjct: 438 YTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNG 497

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           + ++GL PD+   N M+  Y ++GQ ++   +L+ M +     D+   N LI+   + G 
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++   +F  +   +L P VVT+ + L+   ++   ++ +E+FE MI+  C P+  +   
Sbjct: 558 VDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNT 617

Query: 220 LISACSSEDQIE 231
           L+      D++E
Sbjct: 618 LLDCFCKNDEVE 629



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 106/215 (49%), Gaps = 11/215 (5%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+     S+Y         +A  +F  ++  G+ P   ++ +++  YSK G V +   
Sbjct: 469 VPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVN 528

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++++M ++G +PD  V+NS+++   + G+ ++  ++   M+    +  + TYN L++  G
Sbjct: 529 LLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLG 588

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G ++K   LF+S+  K+  P+ +++ + L  + +       L++F +M    C PD  
Sbjct: 589 KEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVL 648

Query: 216 TAKVLISACSSEDQIEQV----TTLVRTMHKDMKT 246
           T   +I     E+++         L ++MH D  T
Sbjct: 649 TYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVT 683



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 6/162 (3%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +F+ M   GI P +KS+ +L+      G V +     N++  +GL PD    N ++N
Sbjct: 947  ACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIIN 1006

Query: 118  LYGRLGQFEKMEEVLT---AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
                LG+ ++MEE L     M       D+ TYN L+   G  G +E+ + +++ L    
Sbjct: 1007 ---GLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAG 1063

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            L+PDV T+ + +  YS  +       +++ M+  GC P+ GT
Sbjct: 1064 LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGT 1105



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 1/191 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A A F+ M++ GI P + ++  L+    + G +     ++  M   G++P  +  N 
Sbjct: 383 FDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNI 442

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++ +G+ G+  K  E    M+      +I   N  +      G + + + +F  L    
Sbjct: 443 FIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENG 502

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD VT+   +  YS+       + +  EMI  GC PD      LI +     ++++  
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAW 562

Query: 235 TLVRTMHKDMK 245
            +   M KDMK
Sbjct: 563 QMFDRM-KDMK 572



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A+ +F++  K+LGI+PT+ S+  L+    +     K   +   M   G  PD F  N +L
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++G+ G+  ++ E+   M       D  TYNI+I+   +   ++K    F  L +   +
Sbjct: 831 AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P   T+   +   ++       + +FEEM D GC P+     +LI+        E    L
Sbjct: 891 PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 237 VRTM 240
            + M
Sbjct: 951 FKRM 954



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           + + I S +  +A  V+  M   G+ P++K++  L+ A  K  +      ++ +M   GL
Sbjct: 199 IHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGL 258

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+ +     + + GR G+ ++  E+   M+      D+ TY +LI+     G +E  + 
Sbjct: 259 RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKE 318

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C 224
           LF  + A   KPD V + + L  ++         E + +M   G  PD  T  +L+   C
Sbjct: 319 LFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLC 378

Query: 225 SSEDQIEQVTTL 236
            + D  E   T 
Sbjct: 379 KARDFDEAFATF 390



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 85/197 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +   M+ +G+ PT  ++ + +  + K+G   K      +M   G+ P+    N+ L
Sbjct: 420 DALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASL 479

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                +G+  + + +   + +   A D  TYN+++  Y + G +++   L   +     +
Sbjct: 480 YSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCE 539

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV+   S + +  +        ++F+ M D    P   T   L+S    E ++++   L
Sbjct: 540 PDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIEL 599

Query: 237 VRTMHKDMKTALPIYFN 253
             +M +   +   I FN
Sbjct: 600 FESMIEKKCSPNTISFN 616



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D  AVFE M++  I   + +++ +  A S  G + +   V+N+M K+G   + +  N ++
Sbjct: 140 DMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLI 199

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +L  + G   +  EV   M        + TY+ L+   G+    E +  L + +    L+
Sbjct: 200 HLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLR 259

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V T+T  +    R        EIF  M D GC PD  T  VLI A  +  Q+E    L
Sbjct: 260 PNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKEL 319

Query: 237 VRTMHKD 243
              M  +
Sbjct: 320 FVKMKAN 326



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 75/182 (41%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            + +EM+ LG+ P + +  + +    + G + +   +  +M   G  PD      +++  
Sbjct: 248 VLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDAL 307

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              GQ E  +E+   M+   +  D   Y  L++ +   G ++  +  +  + A    PDV
Sbjct: 308 CNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDV 367

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+T  +    + + +      F+ M   G  P+  T   LI       +IE    L+ T
Sbjct: 368 VTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGT 427

Query: 240 MH 241
           M 
Sbjct: 428 ME 429



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 81/182 (44%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           + +M+  G  P + +  +L+    K  +  +     + M K G+ P+    N+++    R
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLR 414

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+ E   ++L  ME         TYNI I+ +G+ G   K    F+ + AK + P++V 
Sbjct: 415 AGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             + L + +     R    +F  + + G  PD  T  +++   S   Q+++   L+  M 
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534

Query: 242 KD 243
           ++
Sbjct: 535 RN 536



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 72   PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
            PT +++  L+   +K G + +   +  +M   G KP+  + N ++N YG++G  E   ++
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 132  LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
               M       D+ +Y IL++     G +++    F  L +  L PD + +   +    +
Sbjct: 951  FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGK 1010

Query: 192  KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247
             +     L ++ EM + G  PD  T   L+        +EQ     + M+++++ A
Sbjct: 1011 SQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQ----AKRMYEELQLA 1062



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/179 (18%), Positives = 76/179 (42%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  +F++MK +G  P   +  +LL  + K+G + +   +  +M     KPD    N
Sbjct: 803 YTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYN 862

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++   +    +K  +    +    +     TY  LI+   + G +E+   LF+ +   
Sbjct: 863 IVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDY 922

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             KP+   +   +  Y +        ++F+ M++ G  PD  +  +L+       ++++
Sbjct: 923 GCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDE 981



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 68/153 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V  +M++ G      S+  L+    ++G   +   V  +M   GLKP     ++++   G
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALG 238

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +    E +  +L  ME      ++ T+ I I + GR G I++   +F+ +  +   PD+V
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLV 298

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           T+T  + A           E+F +M   G  PD
Sbjct: 299 TYTVLIDALCNAGQLENAKELFVKMKANGHKPD 331



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL---GQ 124
           L  T T    +  L  + K  ++A    V   M K  ++ D   +++ L ++  L   G 
Sbjct: 119 LHTTETCNFMLEFLRVHDKVEDMA---AVFEFMQKKIIRRD---LDTYLTIFKALSIRGG 172

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +M  VL  M K  +  +  +YN LI++  + GF  +   +++ + ++ LKP + T+++
Sbjct: 173 LRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSA 232

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            + A  +K+     + + +EM D G  P+  T  + I       +I++   + R M  +
Sbjct: 233 LMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE 291



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 62   FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS-MLNLYG 120
            F E+K  G+ P   ++  ++    K+  + +   + N+M   G+ PD +  NS MLNL G
Sbjct: 986  FNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNL-G 1044

Query: 121  RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              G  E+ + +   ++      D+ TYN LI  Y      E    +++++      P++ 
Sbjct: 1045 LAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIG 1104

Query: 181  TWT 183
            T+ 
Sbjct: 1105 TYA 1107



 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 44/96 (45%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +A A++ EM+  GI P + ++  L+      G V + + +  ++  +GL+PD F  N+++
Sbjct: 1016 EALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALI 1075

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              Y      E    V   M       +I TY  L N
Sbjct: 1076 RGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111


>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
 gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 95/185 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ VFEEM  +G +P + S+  L+  Y   G ++    + + M K+G+ PD    N+++N
Sbjct: 257 ANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVN 316

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + ++G+ ++  ++   M+  S +    TYNILIN Y + G  E    LF+ +   ++K 
Sbjct: 317 GFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKA 376

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++T+ + +    ++   ++   +  E+ + G  P+  T   LI     + Q E+   + 
Sbjct: 377 DILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQSERAFQIY 436

Query: 238 RTMHK 242
           ++M K
Sbjct: 437 KSMIK 441



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 2/192 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A + EM+R  I P   +  L++ A  K G + K   V  +M   G  P+    N+++ 
Sbjct: 222 ALAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIA 281

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G      ++ + MEK     D+ T+N L+N + + G +++   LF  +    L P
Sbjct: 282 GYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSP 341

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             VT+   +  YS+         +FEEM       D  T   LI     E + ++   LV
Sbjct: 342 TTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLV 401

Query: 238 RTMHKDMKTALP 249
           R +  D K  +P
Sbjct: 402 REL--DEKGLVP 411



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 1/189 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  +   M++ G+ P + +   L+  + K G + +   +  +M    L P T   N 
Sbjct: 289 LSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNI 348

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y + G  E    +   M +    ADI TYN LI    + G  +K   L + L  K 
Sbjct: 349 LINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKG 408

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQV 233
           L P+  T+++ +     +K   R  +I++ MI +   P   T ++L+S  C +ED    V
Sbjct: 409 LVPNASTFSALIYGQCVQKQSERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENEDYDGAV 468

Query: 234 TTLVRTMHK 242
             L   +++
Sbjct: 469 QLLEEMLNR 477



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 7/181 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EMK + ++PT  ++ +L+  YSK GN      +  +M +  +K D    N+++
Sbjct: 326 EASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALI 385

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR--GGFIEKMEGLFQSLPAKR 174
               + G+ +K   ++  +++     + ST++ LI  YG+      E+   +++S+    
Sbjct: 386 LGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALI--YGQCVQKQSERAFQIYKSMIKSS 443

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P   T+   L+ +   + Y   +++ EEM++    PD      L   C+   Q  +V 
Sbjct: 444 FTPCDQTFRMLLSTFCENEDYDGAVQLLEEMLNRHKAPDVNN---LYELCAGLGQCGKVK 500

Query: 235 T 235
           T
Sbjct: 501 T 501


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 96/196 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+  G TP + ++ +L+    K G + +    +N M  SG +P+    N +L 
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++   E++L  M +  ++  + T+NILIN   R G + +   + + +P    +P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQP 377

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +++   L  + ++K   R +E  E M+  GCYPD  T   +++A   + ++E    ++
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 238 RTMHKDMKTALPIYFN 253
             +     + + I +N
Sbjct: 438 NQLSSKGCSPVLITYN 453



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 3/179 (1%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E M   G  P +     L+  + + G   K   ++  +  SG  PD    N M++ Y +
Sbjct: 125 LENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCK 184

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+   +   L+ +++ S + D+ TYN ++      G +++   +   +  +   PDV+T
Sbjct: 185 AGE---INNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +T  + A  R     + +++ +EM D GC PD  T  VL++    E ++++    +  M
Sbjct: 242 YTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 11/244 (4%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L + L    +P++  F   I F         A  + E+M + G  P   S+  LL  + 
Sbjct: 331 LLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFC 390

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K   + +    + +M   G  PD    N+ML    + G+ E   E+L  +     +  + 
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLI 450

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN +I+   + G   K   L   + AK LKPD +T++S +   SR+      ++ F E 
Sbjct: 451 TYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF 510

Query: 206 IDAGCYPDGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMK---TALPIYFNLYGEKGVA 261
              G  P+  T   +++  C +      +  LV  +++  K   T+  I       +G+A
Sbjct: 511 ERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMA 570

Query: 262 RSNL 265
           +  L
Sbjct: 571 KEAL 574



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 3/169 (1%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           +TG + +    +  M   G  PD     +++  + R+G+  K  ++L  +E      D+ 
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVI 173

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN++I+ Y + G I     +   +    + PDVVT+ + L +       ++ +E+ + M
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           +   CYPD  T  +LI A   +  + Q   L+  M     T   + +N+
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNV 279



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 83/201 (41%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L + P L  F        A    E M   G  P + ++  +LTA  K G V     ++NQ
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +   G  P     N++++   + G+  K  ++L  M       D  TY+ L+    R G 
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++    F       ++P+ VT+ S +    + +   R ++    MI+ GC P   +  +
Sbjct: 500 VDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTI 559

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI   + E   ++   L+  +
Sbjct: 560 LIEGLAYEGMAKEALELLNEL 580



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 2/177 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +M R G +P++ +  +L+    + G + +   ++ +M K G +P++   N +L
Sbjct: 327 DAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLL 386

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + + +  + ++  E L  M  +G Y  DI TYN ++    + G +E    +   L +K  
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRGCYP-DIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            P ++T+ + +   ++     + +++ +EM      PD  T   L+   S E ++++
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 89/198 (44%), Gaps = 5/198 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E ++  G  P + ++ ++++ Y K G +     V+++M  S   PD    N++L 
Sbjct: 156 AAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILR 212

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ ++  EVL  M +     D+ TY ILI    R   + +   L   +  +   P
Sbjct: 213 SLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTP 272

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSSEDQIEQVTTL 236
           DVVT+   +    ++      ++   +M  +GC P+  T  +++ S CS+   ++    L
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332

Query: 237 VRTMHKDMKTALPIYFNL 254
              + K    ++ + FN+
Sbjct: 333 ADMLRKGFSPSV-VTFNI 349



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 79/183 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V + M +    P + ++ +L+ A  +   V +   ++++M   G  PD    N ++N
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVN 282

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  + L  M       ++ T+NI++      G     E L   +  K   P
Sbjct: 283 GICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP 342

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            VVT+   +    RK L  R ++I E+M   GC P+  +   L+     E ++++    +
Sbjct: 343 SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYL 402

Query: 238 RTM 240
             M
Sbjct: 403 ERM 405



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/158 (18%), Positives = 70/158 (44%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           + R+ ++P + ++  +L +   +G + +   V+++M +    PD      ++    R   
Sbjct: 195 LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG 254

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +  ++L  M       D+ TYN+L+N   + G +++       +P+   +P+V+T   
Sbjct: 255 VGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            L +      +    ++  +M+  G  P   T  +LI+
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +FEEM    I P M  +  L+    K+G        I +MH  G  PD F  NS+
Sbjct: 288 DEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSL 347

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +    +K  E+LT ++       + TYNILIN   + G ++  E +F+ L  K  
Sbjct: 348 LDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGY 407

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             DV T+ + +  + +K L+   L +  +M D+GC PD    +++I +
Sbjct: 408 NTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRS 455



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 15/187 (8%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +  +M    I PT+ +  +L+ A+ K G + + + V   M K  +KP+    NS
Sbjct: 203 LKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNS 262

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAA--------------DISTYNILINIYGRGGFI 160
           +++ +  +   +K + +   M K    A              D+  YN LI+   + G  
Sbjct: 263 LMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRT 322

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
                    +  +   PD+ T+ S L A  +     + +E+  ++ D G  P   T  +L
Sbjct: 323 PYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNIL 382

Query: 221 ISA-CSS 226
           I+  C S
Sbjct: 383 INGLCKS 389



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 1/196 (0%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +VF  + + G      +   L+      G + K     +++   G K +     +++N  
Sbjct: 68  SVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGL 127

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++GQ     E L  ++      D+  YN +I+   +   +     L+  + AKR+ P V
Sbjct: 128 CKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSV 187

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+ + +         +  + +  +MI     P   T  +LI A   E ++++   +   
Sbjct: 188 VTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAV 247

Query: 240 MHK-DMKTALPIYFNL 254
           M K D+K  +  Y +L
Sbjct: 248 MMKEDVKPNIVTYNSL 263



 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 83/213 (38%), Gaps = 10/213 (4%)

Query: 38  LLLQH---TPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           +LL H   TP++F F       + + ++S   ++  +M+  G+   + +  +L+  YS+ 
Sbjct: 1   MLLHHKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQL 60

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G  A    V   + K G   D     +++      G+  K       +    +  +  +Y
Sbjct: 61  GQNALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSY 120

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
             LIN   + G         + +  K ++PDVV + + +    + KL      ++ EM+ 
Sbjct: 121 GTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVA 180

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
               P   T   LI       Q++    L+  M
Sbjct: 181 KRICPSVVTYNTLICGLCIMAQLKDAIGLLHKM 213


>gi|224119538|ref|XP_002318099.1| predicted protein [Populus trichocarpa]
 gi|222858772|gb|EEE96319.1| predicted protein [Populus trichocarpa]
          Length = 426

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 92/179 (51%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           +T  +  +  S +   A+  FE M+R GI P+++++  LL A+ + G+      +   M 
Sbjct: 190 YTALIHAYSVSGWHEKAYITFENMQREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKLMM 249

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           +  ++      N +L+ + + G + +  +V+   +K      + TYN+L+N Y RGG   
Sbjct: 250 REKVEGTRVTFNILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGGQDS 309

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           K+  L + +   +L+PD +T+T+ + AY R + +RR     + M+ +G  PD  + + L
Sbjct: 310 KLPQLLKEMATLKLEPDSITYTTMIYAYVRVRDFRRAFFYHKMMVKSGKVPDAKSYQKL 368



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 1/192 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+R GI+     +  L+ +YSK+  + + EG+ ++M   GLKP +   N +++ Y R  
Sbjct: 71  EMERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQAKGLKPTSATFNILMDAYSRRM 130

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKRLKPDVVTW 182
           Q + +E++L  M+    A +  +Y  LI+ YGR   +  M    F  +    +KP   ++
Sbjct: 131 QPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKKAGIKPTSYSY 190

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           T+ + AYS    + +    FE M   G  P   T   L+ A       + +  + + M +
Sbjct: 191 TALIHAYSVSGWHEKAYITFENMQREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKLMMR 250

Query: 243 DMKTALPIYFNL 254
           +      + FN+
Sbjct: 251 EKVEGTRVTFNI 262



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 1/170 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           M+   ++P   +  +++T   K G  AK       +M + G+K    V+ +++  +   G
Sbjct: 1   MEAYNVSPDHVTCCIMITVMRKKGCTAKEAWEFFERMTRKGVKWSPEVLGALIKSFCDEG 60

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             ++   + T ME+   +++   YN L++ Y +   IE+ EGL+  + AK LKP   T+ 
Sbjct: 61  LKKEALIIQTEMERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQAKGLKPTSATFN 120

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             + AYSR+       ++  EM DAG  P+  +   LISA   + ++  +
Sbjct: 121 ILMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDM 170



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 86/178 (48%), Gaps = 1/178 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EM+  G+ P  KS+  L++AY +   ++        +M K+G+KP ++   ++++ Y   
Sbjct: 141 EMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKKAGIKPTSYSYTALIHAYSVS 200

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  EK       M++      I TY  L++ + R G  + +  +++ +  ++++   VT+
Sbjct: 201 GWHEKAYITFENMQREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKLMMREKVEGTRVTF 260

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              L  ++++  Y    ++  E    G +P   T  +L++A +   Q  ++  L++ M
Sbjct: 261 NILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGGQDSKLPQLLKEM 318



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 2/200 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   FE M R G+  + +    L+ ++   G   +   +  +M + G+  +  + N+++
Sbjct: 29  EAWEFFERMTRKGVKWSPEVLGALIKSFCDEGLKKEALIIQTEMERRGISSNAIIYNTLM 88

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +  Q E+ E + + M+        +T+NIL++ Y R    + +E L   +    L 
Sbjct: 89  DSYSKSNQIEEAEGLYSEMQAKGLKPTSATFNILMDAYSRRMQPDIIEKLLLEMQDAGLA 148

Query: 177 PDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           P+  ++T  ++AY R KK+     + F  M  AG  P   +   LI A S     E+   
Sbjct: 149 PNAKSYTCLISAYGRQKKMSDMAADAFLRMKKAGIKPTSYSYTALIHAYSVSGWHEKAYI 208

Query: 236 LVRTMHKD-MKTALPIYFNL 254
               M ++ +K ++  Y  L
Sbjct: 209 TFENMQREGIKPSIETYTTL 228


>gi|222626074|gb|EEE60206.1| hypothetical protein OsJ_13175 [Oryza sativa Japonica Group]
          Length = 789

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 1/163 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM   G TP   +++ L+ A++  G  A+   V+ QM   G  P       +L+LYG
Sbjct: 109 LFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYG 168

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+F+ + E+   M + +   D +TYN+L  ++G GGF +++  LFQ +    ++PD+ 
Sbjct: 169 RQGRFDGVRELFREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDID 227

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T  + + A  R  L+    E+ + +   G  P       L+ A
Sbjct: 228 TCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEA 270



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G+ P   S+  ++ A++  GN+++   +  +M  +G  PD      ++  +  +G 
Sbjct: 78  MLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGA 137

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   VL  M+        +TY +L+++YGR G  + +  LF+ +    + PD  T+  
Sbjct: 138 TAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREM-RTTVPPDTATYNV 196

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               +     ++  +E+F++M+ +   PD  T + ++ AC
Sbjct: 197 LFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVAC 236



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           + +A+  F  M  +G  PT++++  L  A++K G   + E + ++M + + ++ D    +
Sbjct: 277 YEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFD 336

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  Y +  Q +   +    M K  +  D  +   ++N Y   G I++ +  F+ L + 
Sbjct: 337 ALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSM 396

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              P ++ +   L+ Y+R   +    ++ EEM
Sbjct: 397 VTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 428



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 88/209 (42%), Gaps = 18/209 (8%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGN----VAKCEGVINQMHKS---GLKPDTFVINSMLN 117
           MK  G+ PT  ++  +L A ++  +         G+  +M       ++PD    N++L 
Sbjct: 1   MKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLA 60

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                   ++ E +L  M +     D ++Y  +++ +   G + ++  LF  + A    P
Sbjct: 61  AAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTP 120

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D   +   + A++        + +  +M   GC P   T +VL+     + + +     V
Sbjct: 121 DPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDG----V 176

Query: 238 RTMHKDMKTALP-------IYFNLYGEKG 259
           R + ++M+T +P       + F ++G+ G
Sbjct: 177 RELFREMRTTVPPDTATYNVLFRVFGDGG 205



 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 37/198 (18%), Positives = 85/198 (42%), Gaps = 8/198 (4%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF    +F +   +F++M    + P + +   ++ A  + G       V++ +   G+ P
Sbjct: 200 VFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVP 259

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++   G    +E+       M +      I TYN L N + +GG  ++ E +F
Sbjct: 260 TAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIF 319

Query: 168 QSLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C- 224
             +     ++ D  ++ + + AY +       ++ + EM  +   PD  + + +++A C 
Sbjct: 320 SRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 379

Query: 225 -----SSEDQIEQVTTLV 237
                 S++Q E++ ++V
Sbjct: 380 AGVIDESKEQFEELQSMV 397



 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F EM R  + P   ++ +L   +   G   +   +   M  S ++PD     +
Sbjct: 173 FDGVRELFREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCEN 231

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   GR G  E   EVL  +           Y  L+   G     E+    F  +    
Sbjct: 232 VMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIG 291

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQV 233
             P + T+ +   A+++  L++    IF  M  +A    D  +   LI A     Q++  
Sbjct: 292 SLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDA 351

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 352 VKAYMEMRK 360


>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1006; Flags: Precursor
 gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 723

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 2/174 (1%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H+    +  +S+  +   A+A FEEM + GI P+++++  +L A+ ++G+  K   +   
Sbjct: 486 HSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKL 545

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  +K      N++L+ + + G + +  +V++   K      + TYN+L+N Y RGG 
Sbjct: 546 MLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQ 605

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             K+  L + + A  LKPD +T+++ + A+ R + ++R     + M+ +G  PD
Sbjct: 606 DAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 1/170 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
           + DA  V+E M ++ + P   +  +L+T   K G  AK    +  +M + G+K    V  
Sbjct: 289 YDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFG 348

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  +   G  E+   + T MEK    ++   YN L++ Y +   IE++EGLF  +  K
Sbjct: 349 GLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDK 408

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            LKP   T+   + AY+R+        +  EM D G  P+  +   LISA
Sbjct: 409 GLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISA 458



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 1/168 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  EM++ GI      +  L+ AY+K+ ++ + EG+  +M   GLKP     N ++
Sbjct: 362 EALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILM 421

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKRL 175
           + Y R  Q + +E +L  ME      ++ +Y  LI+ YGR   +  M    F  +    L
Sbjct: 422 DAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGL 481

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           KP   ++T+ + AYS    + +    FEEM   G  P   T   ++ A
Sbjct: 482 KPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDA 529



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 1/166 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FE+M   G+  +      L+ ++   G   +   +  +M K G++ +T V N++++ Y 
Sbjct: 331 IFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYN 390

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +    E++E + T M         +TYNIL++ Y R    + +E L + +    L+P+V 
Sbjct: 391 KSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVK 450

Query: 181 TWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           ++T  ++AY R KK+     + F  M   G  P   +   LI A S
Sbjct: 451 SYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYS 496



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 1/156 (0%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S +  +   +F EM+  G+ P+  ++ +L+ AY++       E ++ +M   GL+P+   
Sbjct: 392 SNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKS 451

Query: 112 INSMLNLYGRLGQFEKM-EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
              +++ YGR  +   M  +    M+K        +Y  LI+ Y   G+ EK    F+ +
Sbjct: 452 YTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEM 511

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
             + +KP V T+TS L A+ R     + +EI++ M+
Sbjct: 512 CKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLML 547



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLN 117
             +  EM+ LG+ P +KS+  L++AY +T  ++        +M K GLKP +    ++++
Sbjct: 434 ETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIH 493

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  EK       M K      + TY  +++ + R G   K+  +++ +  +++K 
Sbjct: 494 AYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKG 553

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             +T+ + L  ++++ LY    ++  E    G  P   T  +L++A +   Q  ++  L+
Sbjct: 554 TRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLL 613

Query: 238 RTM 240
           + M
Sbjct: 614 KEM 616



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  E  ++G+ P++ ++ +L+ AY++ G  AK   ++ +M    LKPD+   ++M+
Sbjct: 573 EARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMI 632

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             + R+  F++       M K     D  +Y  L  I
Sbjct: 633 YAFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAI 669


>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 890

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 13/228 (5%)

Query: 3   KPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLF-------VFIFSIYF 55
           +P  TT +  +A  A  S     L   S  +L   L    +P+          F  +   
Sbjct: 270 RPDLTTYNTLLAAAAVRS-----LADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNL 324

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +F EM   G T    +++ L+ A+++ G  A    V+ QM   G  P       +
Sbjct: 325 SRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVL 384

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+LYGR G+F+ + ++   M + +   D +TYN+L  ++G GGF +++  LF  +    +
Sbjct: 385 LDLYGRQGRFDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGV 443

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +PD+VT  + +AA     L+    E+ E M   G  P       L+ A
Sbjct: 444 QPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEA 491



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G++P   S+  ++ A++  GN+++   + ++M  +G   D      ++  + R+G 
Sbjct: 299 MLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGA 358

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                 VL  M+    A   +TY +L+++YGR G  + +  LF+ +    + PD  T+  
Sbjct: 359 TADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA-VPPDTATYNV 417

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               +     ++  +E+F +M+  G  PD  T + +++AC
Sbjct: 418 LFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAAC 457



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 100/234 (42%), Gaps = 18/234 (7%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----VAKCEG 95
           L +T  +  +  +    +A A+ ++MK  G+ PT  ++  +L A ++  +         G
Sbjct: 197 LSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLG 256

Query: 96  VINQMHKSG---LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           +  +M       ++PD    N++L         ++ E +L  M +   + D  +Y  +++
Sbjct: 257 LFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVD 316

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            +   G + +   LF  + A     D   +   + A++R       + +  +M   GC P
Sbjct: 317 AFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAP 376

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP-------IYFNLYGEKG 259
              T +VL+     + + +     VR + ++M+TA+P       + F ++G+ G
Sbjct: 377 TAATYRVLLDLYGRQGRFDG----VRQLFREMRTAVPPDTATYNVLFRVFGDGG 426



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           + +A+  F  M  +G  PT++++  L  AY++ G   + E + ++M + +G++      +
Sbjct: 498 YEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFD 557

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  Y +  + +   +    M K  +  D  +   ++N Y   G I++ +  F+ L + 
Sbjct: 558 ALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSS 617

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              P V+ +   L+ Y+R   +    ++ EEM
Sbjct: 618 VTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 649



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 19/202 (9%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----------- 121
           T  S+  L+ AY++     +   +++QM  +G+ P     N++L    R           
Sbjct: 195 TALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDML 254

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           LG F +M    +     S   D++TYN L+         ++ E L  ++    + PD V+
Sbjct: 255 LGLFAEMRHDASP----SVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVS 310

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   + A++      R  E+F EM   G   D      L+ A +          ++R M 
Sbjct: 311 YRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQ 370

Query: 242 KD----MKTALPIYFNLYGEKG 259
            D          +  +LYG +G
Sbjct: 371 ADGCAPTAATYRVLLDLYGRQG 392



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 1/157 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V E M R G+ PT  ++  L+ A        +     N M + G  P     N++ 
Sbjct: 465 DAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALA 524

Query: 117 NLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
             Y R G F++ E + + M   +       +++ LI  Y +G  ++     +  +   R 
Sbjct: 525 FAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRF 584

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            PD  +    L AY    +     E FEE+  +   P
Sbjct: 585 NPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMP 621



 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F EM R  + P   ++ +L   +   G   +   + + M K+G++PD     +
Sbjct: 394 FDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCEN 452

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   G  G      EVL  M +         Y  L+   G     E+    F  +    
Sbjct: 453 VMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIG 512

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQV 233
             P + T+ +   AY+R  L++    IF  M  +AG      +   LI A     +++  
Sbjct: 513 SLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDA 572

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 573 VKAYMEMRK 581



 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 8/198 (4%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF    +F +   +F +M + G+ P M +   ++ A    G       V+  M + G+ P
Sbjct: 421 VFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 480

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++   G    +E+       M +      + TYN L   Y RGG  ++ E +F
Sbjct: 481 TADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIF 540

Query: 168 QSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C- 224
             +     ++    ++ + + AY +       ++ + EM  +   PD  + + +++A C 
Sbjct: 541 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 600

Query: 225 -----SSEDQIEQVTTLV 237
                 S++Q E++ + V
Sbjct: 601 AGVIDESKEQFEELQSSV 618


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 95/187 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+E+   G  P   ++  LL A++K G+V + E V  ++ K+G + D    N+M+
Sbjct: 346 EAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMI 405

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++YG++G+ +    +   M       D  TY +L++  G+   I +   + + +    LK
Sbjct: 406 HMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLK 465

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +VT+++ + AY++          F+ M+++G  PD     V++   +  D+  ++  L
Sbjct: 466 PTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVL 525

Query: 237 VRTMHKD 243
            R M KD
Sbjct: 526 YRAMIKD 532



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA AVFEEM      P + ++  +++ + + G   + E +  ++ + G +PD    NS
Sbjct: 309 LDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNS 368

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + + G  E++E V   + K  +  D  TYN +I++YG+ G ++   GL+  + A  
Sbjct: 369 LLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIG 428

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             PD VT+T  + +  +        ++ EEM DAG  P   T   LI A
Sbjct: 429 CTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICA 477



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 91/176 (51%), Gaps = 2/176 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG--VINQMHKSGL 105
           V+  S  F DA  + + M+   I P + S   L+ A +K+G +A      +++++ ++GL
Sbjct: 230 VYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGL 289

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    N++++   +    +    V   M       D+ TYN +++++GR G  ++ E 
Sbjct: 290 RPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAEL 349

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +F+ L  K  +PD VT+ S L A++++    R   + EE++ AG   DG T   +I
Sbjct: 350 MFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMI 405



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 93/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  E+++ G+ P   ++  L++A S+  N+     V  +M  S  +PD +  N+M++
Sbjct: 277 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 336

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++GR G+ ++ E +   + +  +  D  TYN L+  + + G +E++E + + L     + 
Sbjct: 337 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 396

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y +       L +++EM   GC PD  T  VL+ +    D+I +   ++
Sbjct: 397 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 456

Query: 238 RTM 240
             M
Sbjct: 457 EEM 459



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  V EEM   G+ PT+ +   L+ AY+K+G     E   ++M +SG+KPD      
Sbjct: 449 ISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLV 508

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK- 173
           ML+++ R  +  K+  +  AM K  Y  D   Y +L+    +G   +++EG+ Q + A  
Sbjct: 509 MLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVF 568

Query: 174 RLKPDVVT---WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            + P V++     +   +     L R CL+ +E        PDG +   ++ A
Sbjct: 569 EMNPLVISSILIKAECISQGASLLKRACLQGYE--------PDGKSLLSILDA 613



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 55   FSDAHAVFE------EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
            F+ A  VFE       MK  G  P M  + ++++           E ++ +M  +G KPD
Sbjct: 862  FAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPD 921

Query: 109  TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
              V+N++L +Y   G F++  EV  ++ +     D  TYN LI +Y R    E+   L  
Sbjct: 922  LVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLY 981

Query: 169  SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
             +  + L P + ++   LAA  + KL+ +   +FEEM   G
Sbjct: 982  EMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKG 1022



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 97/217 (44%), Gaps = 8/217 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF    R G T  + + M+    Y+++G       +++ M    ++PD    N+++N
Sbjct: 207 AEDVFLRFAREGATVQVFNAMM--GVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLIN 264

Query: 118 LYGRLGQFEK--MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
              + G        E+L  + +     D  TYN LI+   +G  ++    +F+ + A   
Sbjct: 265 ARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASEC 324

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PD+ T+ + ++ + R    +    +F+E+++ G  PD  T   L+ A + E  +E+V  
Sbjct: 325 RPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVER 384

Query: 236 LVRTMHKDMKTALPIYFN----LYGEKGVARSNLGQY 268
           +   + K       I +N    +YG+ G     LG Y
Sbjct: 385 VCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLY 421



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 2/195 (1%)

Query: 48   VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
              I      + + V +E++ L I  +  + +L+L A++K G+V +   + N M  +G  P
Sbjct: 826  ALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLP 885

Query: 108  DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY-GRGGFIEKMEGL 166
            +  +   M++L     +F  +E ++  ME   +  D+   N L+ +Y G G F   +E +
Sbjct: 886  NMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIE-V 944

Query: 167  FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
            + S+    L+PD  T+ + +  YSR         +  EM   G  P   + K+L++A   
Sbjct: 945  YHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGK 1004

Query: 227  EDQIEQVTTLVRTMH 241
                EQ   L   M 
Sbjct: 1005 AKLWEQADLLFEEMR 1019



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 85/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A A+F+ M + G  PT++S   ++ A    G + +   V+ ++    +K     +  
Sbjct: 798 YEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLL 857

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML  + + G   ++ ++   M+   Y  ++  Y I+I++         +E +   +    
Sbjct: 858 MLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAG 917

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KPD+V   + L  Y+    + R +E++  +++AG  PD  T   LI   S   + E+  
Sbjct: 918 FKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGF 977

Query: 235 TLVRTMHK 242
           TL+  M K
Sbjct: 978 TLLYEMGK 985



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 72/148 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EM+ +G TP   ++ +L+ +  K   +++   V+ +M  +GLKP     ++++ 
Sbjct: 417 ALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALIC 476

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+ +  E     M +     D   Y ++++++ R     K+  L++++     KP
Sbjct: 477 AYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKP 536

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           D   +   LAA ++   +     + ++M
Sbjct: 537 DDGLYQVLLAALAKGNEHDEIEGVIQDM 564



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 3/195 (1%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            F D   +  EM+  G  P +     LL  Y+ TGN  +   V + + ++GL+PD    N+
Sbjct: 903  FRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNT 962

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++ +Y R  + E+   +L  M K      + +Y IL+   G+    E+ + LF+ +  K 
Sbjct: 963  LIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKG 1022

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIE 231
             + +   +   +  Y   + + +   +   M + G  P   T  +L+++  +    D+ E
Sbjct: 1023 YRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAE 1082

Query: 232  QVTTLVRTMHKDMKT 246
            +V   +++ + ++ T
Sbjct: 1083 KVLNSLKSSNLEIST 1097



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +  A  +FEEM+  G       + +++  Y    N +K E +++ M + G++P    ++ 
Sbjct: 1008 WEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHI 1067

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++  YG  G  ++ E+VL +++  +       Y+ +++ Y R    +   G+ + L  KR
Sbjct: 1068 LMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNR--DYSLGITKLLEMKR 1125

Query: 175  --LKPDVVTWTSRLAAYS 190
              ++PD   WTS + A S
Sbjct: 1126 DGVEPDHQVWTSFIRAAS 1143


>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 1/189 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A   F+ M   G+ PT  ++ +++  Y K G V   E   + M +SG++      +
Sbjct: 61  YADYATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQV-VAAYS 119

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M+ +Y R G FEK E+++  M     A D   +   +N YG+ G IE+ E +  ++   
Sbjct: 120 AMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERL 179

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +   VV + S + AY +  LY + L +FE+M +AG  PD  T   +I AC    ++   
Sbjct: 180 GMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDA 239

Query: 234 TTLVRTMHK 242
               + M +
Sbjct: 240 LDYFQAMKR 248



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 1/158 (0%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           ++LG+   + +   L+ +Y K  +    E  + +M  +G        N +L+ YG+ G  
Sbjct: 563 QQLGVADKI-TFSTLINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHL 621

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
           +K+E+V+  MEK     D+++YNILINIYGR   I +ME LF  +  +   PD  T+ + 
Sbjct: 622 DKLEDVIARMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTM 681

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +  Y       + ++ F+ M D+G  PD  T  +L++A
Sbjct: 682 IRTYGYADYPDKAVDTFKMMQDSGIMPDRVTYVMLVAA 719



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 74/137 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  A   EM+  G   +++++  +L AY K G++ K E VI +M KSGL+ D    N 
Sbjct: 586 FRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASYNI 645

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N+YGR  +  +ME +   M++  +  D  TYN +I  YG   + +K    F+ +    
Sbjct: 646 LINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAVDTFKMMQDSG 705

Query: 175 LKPDVVTWTSRLAAYSR 191
           + PD VT+   +AA+ +
Sbjct: 706 IMPDRVTYVMLVAAFEK 722



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 92/200 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA   F+ MKRLGI P   +   L++ Y K  NV     V+  M   G  PD+  +++
Sbjct: 236 LRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDA 295

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R GQ +K+ +VL+ + +  +  D  +Y  L+++Y +    ++   +F ++    
Sbjct: 296 VVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAG 355

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P      S + A     ++     +F +M  AG  P   T+  +I+    +  ++Q  
Sbjct: 356 MAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVKQAE 415

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            L R++   +     I +N+
Sbjct: 416 ELFRSLRSSVSKLDIIAYNV 435



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 5/190 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA   F  M + GI   + ++  ++  Y++ G   K E ++  M    + PD       +
Sbjct: 99  DAEVAFSHMLQSGI-QVVAAYSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQM 157

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YG+ G+ E+ E ++  ME+      +  YN +I  YG+ G  EK   LF+ +    L+
Sbjct: 158 NTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLE 217

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT++  + A  R    R  L+ F+ M   G  P       LIS      +   V  +
Sbjct: 218 PDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYG---KARNVVGI 274

Query: 237 VRTMHKDMKT 246
           VR +  DMK 
Sbjct: 275 VRVL-ADMKN 283



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 3/188 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F  A  + E+M    I P   + +  +  Y + G + + E +++ M + G+       N
Sbjct: 130 FFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYN 189

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           SM+  YG+ G +EK   +   M++     D  TY+ +I   GR G +      FQ++   
Sbjct: 190 SMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRL 249

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ---I 230
            + P    + + ++ Y + +     + +  +M + GC PD  T   ++ A     Q   +
Sbjct: 250 GIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKV 309

Query: 231 EQVTTLVR 238
            QV +L+R
Sbjct: 310 VQVLSLLR 317



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 1/187 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             + H +F+EM  +G  P   +  +++  Y K+G + +         + G+  D    ++
Sbjct: 517 LEEVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGV-ADKITFST 575

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+   F  ME  L  M+   +   +  YN +++ YG+ G ++K+E +   +    
Sbjct: 576 LINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSG 635

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+ D+ ++   +  Y R         +F +M + G  PD  T   +I      D  ++  
Sbjct: 636 LQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAV 695

Query: 235 TLVRTMH 241
              + M 
Sbjct: 696 DTFKMMQ 702



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 6/210 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +FE+MK  G+ P   ++  ++ A  + G +         M + G+ P +   N+
Sbjct: 201 YEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNT 260

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++LYG+      +  VL  M+      D  T + ++  Y R G  +K+  +   L    
Sbjct: 261 LISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLREAG 320

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              D  ++ + L  Y +  L +  L +F  M  AG  P     + LI AC      E  T
Sbjct: 321 WVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYMCRSLICACKDAGMFEDAT 380

Query: 235 TLVRTMHK-----DMKTALPIYFNLYGEKG 259
            + R M        ++T+  +  N++G KG
Sbjct: 381 NVFRDMQSAGVVPSLETSCTM-INVHGLKG 409



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 102/252 (40%), Gaps = 39/252 (15%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V++      +A +VF  M++ G+ P       L+ A    G       V   M  +G+
Sbjct: 332 LHVYLKCNLQKEALSVFSAMRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGV 391

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P      +M+N++G  G  ++ EE+  ++       DI  YN++IN+Y R G  E+   
Sbjct: 392 VPSLETSCTMINVHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFR 451

Query: 166 LFQSLPAKR-LKPDVVTWTSRLAAYSR-------KKLYRR--------------CL---- 199
           +++ +  +  L PD  T+ S L    +       +++Y R              C+    
Sbjct: 452 IYKLMEEEDGLLPDSYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTC 511

Query: 200 ----------EIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQVTTLVRTMHKDMKT 246
                     +IF+EMID GC P+  T  V+I         D+    + L + +    K 
Sbjct: 512 ARFLPLEEVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGVADKI 571

Query: 247 ALPIYFNLYGEK 258
                 N YG+K
Sbjct: 572 TFSTLINSYGKK 583



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 4/183 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V   ++  G     +S+  LL  Y K     +   V + M K+G+ P  ++  S++    
Sbjct: 312 VLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYMCRSLICACK 371

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G FE    V   M+       + T   +IN++G  G +++ E LF+SL +   K D++
Sbjct: 372 DAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVKQAEELFRSLRSSVSKLDII 431

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSS---EDQIEQVTTL 236
            +   +  Y R  ++     I++ M +  G  PD  T   ++  C     + Q E++   
Sbjct: 432 AYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTYHSMLRMCQKCNLQTQAEEIYWR 491

Query: 237 VRT 239
           +R 
Sbjct: 492 LRN 494



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 47/98 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V   M++ G+   + S+ +L+  Y +   +A+ E + ++M + G  PD +  N+M+  YG
Sbjct: 627 VIARMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYG 686

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
                +K  +    M+      D  TY +L+  + + G
Sbjct: 687 YADYPDKAVDTFKMMQDSGIMPDRVTYVMLVAAFEKAG 724


>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 873

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  +F EM   G T    +++ L+ A+++ G  A    V+ QM   G  P       
Sbjct: 302 LSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRV 361

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+LYGR G+F+ + ++   M + +   D +TYN+L  ++G GGF +++  LF  +    
Sbjct: 362 LLDLYGRQGRFDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTG 420

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++PD+VT  + +AA     L+    E+ E M   G  P       L+ A
Sbjct: 421 VQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEA 469



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G++P   S+  ++ A++  GN+++   + ++M  +G   D      ++  + R+G 
Sbjct: 277 MLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGA 336

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                 VL  M+    A   +TY +L+++YGR G  + +  LF+ +    + PD  T+  
Sbjct: 337 TADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA-VPPDTATYNV 395

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               +     ++  +E+F +M+  G  PD  T + +++AC
Sbjct: 396 LFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAAC 435



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 100/234 (42%), Gaps = 18/234 (7%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----VAKCEG 95
           L +T  +  +  +    +A A+ ++MK  G+ PT  ++  +L A ++  +         G
Sbjct: 175 LSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLG 234

Query: 96  VINQMHKSG---LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           +  +M       ++PD    N++L         ++ E +L  M +   + D  +Y  +++
Sbjct: 235 LFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVD 294

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            +   G + +   LF  + A     D   +   + A++R       + +  +M   GC P
Sbjct: 295 AFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAP 354

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP-------IYFNLYGEKG 259
              T +VL+     + + +     VR + ++M+TA+P       + F ++G+ G
Sbjct: 355 TAATYRVLLDLYGRQGRFDG----VRQLFREMRTAVPPDTATYNVLFRVFGDGG 404



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           + +A+  F  M  +G  PT++++  L  AY++ G   + E + ++M + +G++      +
Sbjct: 476 YEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFD 535

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  Y +  + +   +    M K  +  D  +   ++N Y   G I++ +  F+ L + 
Sbjct: 536 ALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSS 595

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              P V+ +   L+ Y+R   +    ++ EEM
Sbjct: 596 VTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 627



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 19/202 (9%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----------- 121
           T  S+  L+ AY++     +   +++QM  +G+ P     N++L    R           
Sbjct: 173 TALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDML 232

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           LG F +M    +     S   D++TYN L+         ++ E L  ++    + PD V+
Sbjct: 233 LGLFAEMRHDASP----SVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVS 288

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   + A++      R  E+F EM   G   D      L+ A +          ++R M 
Sbjct: 289 YRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQ 348

Query: 242 KD----MKTALPIYFNLYGEKG 259
            D          +  +LYG +G
Sbjct: 349 ADGCAPTAATYRVLLDLYGRQG 370



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 1/157 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V E M R G+ PT  ++  L+ A        +     N M + G  P     N++ 
Sbjct: 443 DAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALA 502

Query: 117 NLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
             Y R G F++ E + + M   +       +++ LI  Y +G  ++     +  +   R 
Sbjct: 503 FAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRF 562

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            PD  +    L AY    +     E FEE+  +   P
Sbjct: 563 NPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMP 599



 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F EM R  + P   ++ +L   +   G   +   + + M K+G++PD     +
Sbjct: 372 FDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCEN 430

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   G  G      EVL  M +         Y  L+   G     E+    F  +    
Sbjct: 431 VMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIG 490

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQV 233
             P + T+ +   AY+R  L++    IF  M  +AG      +   LI A     +++  
Sbjct: 491 SLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDA 550

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 551 VKAYMEMRK 559



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 8/198 (4%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF    +F +   +F +M + G+ P M +   ++ A    G       V+  M + G+ P
Sbjct: 399 VFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 458

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++   G    +E+       M +      + TYN L   Y RGG  ++ E +F
Sbjct: 459 TADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIF 518

Query: 168 QSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C- 224
             +     ++    ++ + + AY +       ++ + EM  +   PD  + + +++A C 
Sbjct: 519 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 578

Query: 225 -----SSEDQIEQVTTLV 237
                 S++Q E++ + V
Sbjct: 579 AGVIDESKEQFEELQSSV 596


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 2/175 (1%)

Query: 42  HTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +T N+ V  +  S+ F  A  V  EM++  + P + +H +L+ A  + G+V     +++ 
Sbjct: 158 YTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDS 217

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   GLKP     NS+L    +  +F+K +EV  AM++ S A D+ ++NILI  + R G 
Sbjct: 218 MANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGE 277

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           +E+    ++ +  + + PDVV+++  +  +S +           EM   G  PDG
Sbjct: 278 VEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDG 332



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 92/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   EMK LG+ P    + +++  + + G++++   V ++M   G  PD    N++LN
Sbjct: 316 AAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLN 375

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +    EE+L  M++     D+ T+  LI+ Y R G  EK   LF +L  +RL+P
Sbjct: 376 GLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRP 435

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV + S +    RK    +  E++++M     +P+  T  +LI +   + Q+E+    +
Sbjct: 436 DVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFL 495

Query: 238 RTM 240
             M
Sbjct: 496 DEM 498



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 4/207 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  EMK  G+TP + +   L+  Y + GN  K   + + +    L+PD    NS++
Sbjct: 385 DAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLI 444

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G   K  E+   M       +  TY+ILI+ +   G +E+  G    + +K   
Sbjct: 445 DGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNL 504

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+++T+ S +  Y R    ++  +  ++M+     PD  T   LI     E+ +     +
Sbjct: 505 PNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNV 564

Query: 237 VRTMHKDMKTALPIYFNL----YGEKG 259
              M K+M     + +N+    + E+G
Sbjct: 565 FNIMEKEMVQPDAVTYNMIINGFSEQG 591



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 89/198 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  V +EM  LG  P + ++  LL    K   +   E ++N+M + G+ PD     ++
Sbjct: 349 SEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTL 408

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y R G FEK  ++   +       D+  YN LI+   R G + K   L+  + A+ +
Sbjct: 409 IHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ VT++  + ++  K          +EM+  G  P+  T   +I        +++   
Sbjct: 469 FPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQ 528

Query: 236 LVRTMHKDMKTALPIYFN 253
            ++ M +D      I FN
Sbjct: 529 FLQKMMQDNILPDLITFN 546



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    +EM   G  P + ++  ++  Y ++GNV K +  + +M +  + PD    N+++
Sbjct: 490 EAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLI 549

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +         V   MEK     D  TYN++IN +   G +E+   +F+ + A  ++
Sbjct: 550 HGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIE 609

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           PD  T+ S +  +      +   ++ +EM+  G  PD
Sbjct: 610 PDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 67/135 (49%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           + + +N M++ Y +  +F+K + V++ MEK     D+ T+N+LI+   R G ++    L 
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
            S+  K LKP +VT+ S L    + + + +  E+F  M      PD  +  +LI      
Sbjct: 216 DSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRV 275

Query: 228 DQIEQVTTLVRTMHK 242
            ++E+     + M +
Sbjct: 276 GEVEEAMKFYKEMQQ 290



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 1/201 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  VF  M +  + P ++S  +L+  + + G V +      +M + G+ PD    + 
Sbjct: 243 FDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSC 302

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ L+   G+ +     L  M+      D   Y ++I  + R G + +   +   +    
Sbjct: 303 LIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLG 362

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDVVT+ + L    ++       E+  EM + G  PD  T   LI     +   E+  
Sbjct: 363 CLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKAL 422

Query: 235 TLVRT-MHKDMKTALPIYFNL 254
            L  T +H+ ++  +  Y +L
Sbjct: 423 QLFDTLLHQRLRPDVVAYNSL 443



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 83/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A+ ++++M    I P   ++ +L+ ++ + G V +  G +++M   G  P+    NS
Sbjct: 453 LAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNS 512

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R G  +K ++ L  M + +   D+ T+N LI+ Y +   +     +F  +  + 
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM 572

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++PD VT+   +  +S +        +F++M  +G  PD  T   LI+ 
Sbjct: 573 VQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLING 621


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE M R G+  T+ ++  L+ A SK G V + + + ++  + G++PD  + N+++N
Sbjct: 306 ALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 365

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  ++  E++  MEK   A D  TYN L+      G +++   L   +  + ++P
Sbjct: 366 SHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 425

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + ++ YS K   +  L I  EM++ G  P   T   LI       Q +    +V
Sbjct: 426 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 485

Query: 238 RTM 240
           + M
Sbjct: 486 KEM 488



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 82/169 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+E  R GI P +  +  L+ ++S +GN+ +   ++ +M K  + PD    N+++    
Sbjct: 344 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLC 403

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            LG+ ++  +++  M +     D+ TYN LI+ Y   G ++    +   +  K   P ++
Sbjct: 404 LLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLL 463

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           T+ + +    +         + +EM++ G  PD  T   LI   ++ED+
Sbjct: 464 TYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDE 512



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 82/178 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A+ + EEM   G+ P + ++ +L+  + K GNV K   +   M + G++       ++
Sbjct: 269 TEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTAL 328

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + GQ ++ +++     +     D+  YN LIN +   G I++   +   +  KR+
Sbjct: 329 IYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI 388

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            PD VT+ + +             ++ +EM + G  PD  T   LIS  S +  ++  
Sbjct: 389 APDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDA 446



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           + M   G+  T+ ++ LL+ A    G   +   ++ +M   GL PD F  N ++N + + 
Sbjct: 241 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE 300

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  +K  E+   M +    A + TY  LI    + G +++ + LF     + ++PD+V +
Sbjct: 301 GNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 360

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + ++S      R  EI  EM      PD  T   L+       ++++   L+  M
Sbjct: 361 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 418



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 37/219 (16%)

Query: 61  VFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNL 118
           +  EM+ R GI P   ++  +++ + K G V +   V ++M   G +KP+  + N+++  
Sbjct: 167 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGG 226

Query: 119 YGRLGQF-------EKMEEVLTAMEKGSY----------------------------AAD 143
           Y   G+        ++M E   AM   +Y                            A D
Sbjct: 227 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 286

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TYNILIN + + G ++K   +F+++  + ++  VVT+T+ + A S+K   +   ++F+
Sbjct: 287 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFD 346

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           E +  G  PD      LI++ S+   I++   ++  M K
Sbjct: 347 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 385



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  + +EM   GI P + ++  L++ YS  G+V     + N+M   G  P     N++
Sbjct: 409 DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 468

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +    + GQ +  E ++  M +     D STY  LI
Sbjct: 469 IQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 504



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 56/127 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM++  I P   ++  L+      G V +   +I++M + G++PD    N++++
Sbjct: 376 AFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLIS 435

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  +    +   M    +   + TYN LI    + G  +  E + + +    + P
Sbjct: 436 GYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITP 495

Query: 178 DVVTWTS 184
           D  T+ S
Sbjct: 496 DDSTYIS 502


>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 868

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  +F EM   G T    +++ L+ A+++ G  A    V+ QM   G  P       
Sbjct: 302 LSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRV 361

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+LYGR G+F+ + ++   M + +   D +TYN+L  ++G GGF +++  LF  +    
Sbjct: 362 LLDLYGRQGRFDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTG 420

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++PD+VT  + +AA     L+    E+ E M   G  P       L+ A
Sbjct: 421 VQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEA 469



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G++P   S+  ++ A++  GN+++   + ++M  +G   D      ++  + R+G 
Sbjct: 277 MLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGA 336

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                 VL  M+    A   +TY +L+++YGR G  + +  LF+ +    + PD  T+  
Sbjct: 337 TADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA-VPPDTATYNV 395

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               +     ++  +E+F +M+  G  PD  T + +++AC
Sbjct: 396 LFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAAC 435



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 100/234 (42%), Gaps = 18/234 (7%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----VAKCEG 95
           L +T  +  +  +    +A A+ ++MK  G+ PT  ++  +L A ++  +         G
Sbjct: 175 LSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLG 234

Query: 96  VINQMHKSG---LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           +  +M       ++PD    N++L         ++ E +L  M +   + D  +Y  +++
Sbjct: 235 LFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVD 294

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            +   G + +   LF  + A     D   +   + A++R       + +  +M   GC P
Sbjct: 295 AFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAP 354

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP-------IYFNLYGEKG 259
              T +VL+     + + +     VR + ++M+TA+P       + F ++G+ G
Sbjct: 355 TAATYRVLLDLYGRQGRFDG----VRQLFREMRTAVPPDTATYNVLFRVFGDGG 404



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           + +A+  F  M  +G  PT++++  L  AY++ G   + E + ++M + +G++      +
Sbjct: 476 YEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFD 535

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  Y +  + +   +    M K  +  D  +   ++N Y   G I++ +  F+ L + 
Sbjct: 536 ALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSS 595

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              P V+ +   L+ Y+R   +    ++ EEM
Sbjct: 596 VTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 627



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 19/202 (9%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----------- 121
           T  S+  L+ AY++     +   +++QM  +G+ P     N++L    R           
Sbjct: 173 TALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDML 232

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           LG F +M    +     S   D++TYN L+         ++ E L  ++    + PD V+
Sbjct: 233 LGLFAEMRHDASP----SVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVS 288

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   + A++      R  E+F EM   G   D      L+ A +          ++R M 
Sbjct: 289 YRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQ 348

Query: 242 KD----MKTALPIYFNLYGEKG 259
            D          +  +LYG +G
Sbjct: 349 ADGCAPTAATYRVLLDLYGRQG 370



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 1/157 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V E M R G+ PT  ++  L+ A        +     N M + G  P     N++ 
Sbjct: 443 DAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALA 502

Query: 117 NLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
             Y R G F++ E + + M   +       +++ LI  Y +G  ++     +  +   R 
Sbjct: 503 FAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRF 562

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            PD  +    L AY    +     E FEE+  +   P
Sbjct: 563 NPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTMP 599



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F EM R  + P   ++ +L   +   G   +   + + M K+G++PD     +
Sbjct: 372 FDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCEN 430

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   G  G      EVL  M +         Y  L+   G     E+    F  +    
Sbjct: 431 VMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIG 490

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQV 233
             P + T+ +   AY+R  L++    IF  M  +AG      +   LI A     +++  
Sbjct: 491 SLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDA 550

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 551 VKAYMEMRK 559



 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 8/198 (4%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF    +F +   +F +M + G+ P M +   ++ A    G       V+  M + G+ P
Sbjct: 399 VFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 458

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++   G    +E+       M +      + TYN L   Y RGG  ++ E +F
Sbjct: 459 TADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIF 518

Query: 168 QSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C- 224
             +     ++    ++ + + AY +       ++ + EM  +   PD  + + +++A C 
Sbjct: 519 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 578

Query: 225 -----SSEDQIEQVTTLV 237
                 S++Q E++ + V
Sbjct: 579 AGVIDESKEQFEELQSSV 596


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 36/225 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPD----- 108
           +  A  +FE+M++ G++PT+ ++ ++L  Y K G +  K  G++++M  +GL+ D     
Sbjct: 225 YERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCS 284

Query: 109 ------------------------------TFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
                                         TF  NS+L ++G+ G + +   +L  MEK 
Sbjct: 285 TVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKN 344

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +   D+ TYN L+  Y R GF E+      ++  K + P+ +T+T+ + AY +     + 
Sbjct: 345 NCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKA 404

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           L  F +M ++GC P+  T   ++     + ++E++  ++  M  +
Sbjct: 405 LSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSN 449



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 83/163 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F+E  + G  P +     +L+ ++K     +   ++  + +SGL+PD    NS++++Y 
Sbjct: 617 AFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYA 676

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+  K EE+L  ++K     D+ +YN +I  + R G +++       +    ++P +V
Sbjct: 677 RGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIV 736

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+ + +A YS K ++    E+   MI   C P+  T K+++  
Sbjct: 737 TYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDG 779



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 4/228 (1%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   +  ++ + +  +     + M R GI P   ++  ++ AY K G   K      
Sbjct: 350 LVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFR 409

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           QM +SG  P+    N++L + G+  + E+M ++L  M     A +  T+N ++ + G  G
Sbjct: 410 QMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKG 469

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             + +  +F+ + +   +P+  T+ + + AY R       ++++EEMI AG  P   T  
Sbjct: 470 MHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYN 529

Query: 219 VLISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKGVAR 262
            L++A +     E   +++  M     K  +T+  +  N Y + G  R
Sbjct: 530 ALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGR 577



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 3/185 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +S+A ++ +EM++    P + ++  L+ AY + G   +    I+ M + G+
Sbjct: 322 LQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGI 381

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+     +++N YG+ G+ +K       M++     ++ TYN ++ + G+   +E+M  
Sbjct: 382 MPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMID 441

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +   + +    P+ VTW + LA    K +++    +F EM   G  P+  T   LI A  
Sbjct: 442 MLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYG 501

Query: 224 -CSSE 227
            C S+
Sbjct: 502 RCGSQ 506



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN---VAKCEGVINQMH------------- 101
           A +V  +MK  G  P   S+ L+L  Y+K GN   + K E  I   H             
Sbjct: 544 AESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVL 603

Query: 102 -------------------KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
                              K G KPD  + NSML+++ +   +++  E+L  + +     
Sbjct: 604 ANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQP 663

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+ TYN L+++Y RGG   K E + + +     KPD+V++ + +  + R+ L +  +   
Sbjct: 664 DLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTL 723

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            EM  +G  P   T    ++  S +    +V  ++  M
Sbjct: 724 SEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYM 761



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 35/188 (18%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EMK  G  P   +   L+ AY + G+      +  +M K+G  P     N++LN   
Sbjct: 477 VFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALA 536

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG---FIEK--------------- 162
           R G +E  E V+  M+   +  + ++Y++++N Y +GG    IEK               
Sbjct: 537 RRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWI 596

Query: 163 -----------------MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
                            ME  FQ       KPD+V + S L+ +++ K+Y R  E+   +
Sbjct: 597 LLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLI 656

Query: 206 IDAGCYPD 213
            ++G  PD
Sbjct: 657 RESGLQPD 664



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 80/186 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F  +K  G      ++  LL  + K G  ++   ++ +M K+   PD    N 
Sbjct: 296 LDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNE 355

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R G  E+  + +  M +     +  TY  +IN YG+ G  +K    F+ +    
Sbjct: 356 LVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESG 415

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+ + L    +K      +++  +M   GC P+  T   +++ C ++   + V 
Sbjct: 416 CVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVN 475

Query: 235 TLVRTM 240
            + R M
Sbjct: 476 RVFREM 481



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 5/191 (2%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           +++   +L AYS+ G   +   +  +M K+GL P     N ML++YG++G+ + K+  +L
Sbjct: 209 VRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLL 268

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I+  GR G +++    F  L ++       T+ S L  + + 
Sbjct: 269 DEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKA 328

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTAL 248
            +Y   L I +EM    C PD  T   L++A       E+  + + T++R          
Sbjct: 329 GIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITY 388

Query: 249 PIYFNLYGEKG 259
               N YG+ G
Sbjct: 389 TTVINAYGKAG 399



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 79/173 (45%), Gaps = 7/173 (4%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + P+L +F  + SI+     +  AH +   ++  G+ P + ++  L+  Y++ G   K E
Sbjct: 626 YKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGE 685

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++  + KSG KPD    N+++  + R G  ++    L+ M        I TYN  +  Y
Sbjct: 686 EILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGY 745

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
              G   ++E +   +     +P+ +T+   +  Y + K Y+  ++    + +
Sbjct: 746 SGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITE 798



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 69/160 (43%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +M+  G  P   +   +L      G       V  +M   G +P+    N+++  YGR G
Sbjct: 445 DMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCG 504

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
               + ++   M K  +   ++TYN L+N   R G  E  E +   + +K  KP+  +++
Sbjct: 505 SQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYS 564

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             L  Y++    R   +I EE+ +   +P     + L+ A
Sbjct: 565 LMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLA 604



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 5/160 (3%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           K D  ++  M+ + GR  Q      +L  +    Y+ D+  +  +++ Y R G  E+   
Sbjct: 171 KIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAIT 230

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           +F+ +    L P +VT+   L  Y +  + + + L + +EM   G   D  T   +ISAC
Sbjct: 231 MFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISAC 290

Query: 225 SSEDQIEQVTTLVRTMHKDMKTALPIYFN----LYGEKGV 260
             E  +++       +  +   A    +N    ++G+ G+
Sbjct: 291 GREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGI 330


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ A  K G  AK   V + M K+G  PDT V N +++  G+ G+ ++  E+L  M +  
Sbjct: 123 LMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG 182

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TYNI+I++    G  EK    F  +  ++  PDVVT+ + L    + +      
Sbjct: 183 IMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEAC 242

Query: 200 EIFEEMIDAGCYPD----GGTAKVLISACSSEDQIEQVTTLVRTMH 241
           ++F+EM    C PD    G     L  A   ED +EQ   LV+  H
Sbjct: 243 DLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGH 288



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 9/217 (4%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
            T N+ + + S    +  A++ F  MKR   +P + ++  LL    K     +   + ++
Sbjct: 188 RTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDE 247

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  +   PD     ++++   + G+ E   E    + K  +  +   YN LI+ + R G 
Sbjct: 248 MQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQ 307

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           ++K   LFQ +      PD +T+T  +  +SR+      +E+ +EM+  G  P   T  V
Sbjct: 308 VDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNV 367

Query: 220 LISACSSEDQIEQVTTLVRTM-----HKDMKT--ALP 249
           LI + S   Q+E   TL + M     + DM+T  ALP
Sbjct: 368 LIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALP 404



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 3/207 (1%)

Query: 61  VFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +F  +K+ G   P   S   L+    K         V  +M  +GL+ D  V N++++  
Sbjct: 33  MFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCT 92

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            RLG   +   +L  M   ++  D+ TY+ L++  G+ G   K   +F ++      PD 
Sbjct: 93  CRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDT 152

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           V +   ++   ++      LE+ E+M   G  PD  T  ++I   SS  + E+  +    
Sbjct: 153 VVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGM 212

Query: 240 MHKDMKTALPIYFN--LYGEKGVARSN 264
           M +   +   + +N  L G K + R++
Sbjct: 213 MKRRKHSPDVVTYNTLLNGLKKLRRTD 239


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 36/225 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPD----- 108
           +  A  +FE+M++ G++PT+ ++ ++L  Y K G +  K  G++++M  +GL+ D     
Sbjct: 225 YERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCS 284

Query: 109 ------------------------------TFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
                                         TF  NS+L ++G+ G + +   +L  MEK 
Sbjct: 285 TVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKN 344

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +   D+ TYN L+  Y R GF E+      ++  K + P+ +T+T+ + AY +     + 
Sbjct: 345 NCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKA 404

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           L  F +M ++GC P+  T   ++     + ++E++  ++  M  +
Sbjct: 405 LSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSN 449



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 83/163 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F+E  + G  P +     +L+ ++K     +   ++  + +SGL+PD    NS++++Y 
Sbjct: 617 AFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYA 676

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+  K EE+L  ++K     D+ +YN +I  + R G +++       +    ++P +V
Sbjct: 677 RGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIV 736

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+ + +A YS K ++    E+   MI   C P+  T K+++  
Sbjct: 737 TYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDG 779



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 4/228 (1%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   +  ++ + +  +     + M R GI P   ++  ++ AY K G   K      
Sbjct: 350 LVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFR 409

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           QM +SG  P+    N++L + G+  + E+M ++L  M     A +  T+N ++ + G  G
Sbjct: 410 QMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKG 469

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             + +  +F+ + +   +P+  T+ + + AY R       ++++EEMI AG  P   T  
Sbjct: 470 MHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYN 529

Query: 219 VLISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKGVAR 262
            L++A +     E   +++  M     K  +T+  +  N Y + G  R
Sbjct: 530 ALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGR 577



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 3/185 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +S+A ++ +EM++    P + ++  L+ AY + G   +    I+ M + G+
Sbjct: 322 LQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGI 381

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+     +++N YG+ G+ +K       M++     ++ TYN ++ + G+   +E+M  
Sbjct: 382 MPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMID 441

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +   + +    P+ VTW + LA    K +++    +F EM   G  P+  T   LI A  
Sbjct: 442 MLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYG 501

Query: 224 -CSSE 227
            C S+
Sbjct: 502 RCGSQ 506



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN---VAKCEGVINQMH------------- 101
           A +V  +MK  G  P   S+ L+L  Y+K GN   + K E  I   H             
Sbjct: 544 AESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVL 603

Query: 102 -------------------KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
                              K G KPD  + NSML+++ +   +++  E+L  + +     
Sbjct: 604 ANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQP 663

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+ TYN L+++Y RGG   K E + + +     KPD+V++ + +  + R+ L +  +   
Sbjct: 664 DLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTL 723

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            EM  +G  P   T    ++  S +    +V  ++  M
Sbjct: 724 SEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYM 761



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 35/188 (18%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EMK  G  P   +   L+ AY + G+      +  +M K+G  P     N++LN   
Sbjct: 477 VFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALA 536

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG---FIEK--------------- 162
           R G +E  E V+  M+   +  + ++Y++++N Y +GG    IEK               
Sbjct: 537 RRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWI 596

Query: 163 -----------------MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
                            ME  FQ       KPD+V + S L+ +++ K+Y R  E+   +
Sbjct: 597 LLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLI 656

Query: 206 IDAGCYPD 213
            ++G  PD
Sbjct: 657 RESGLQPD 664



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 80/186 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F  +K  G      ++  LL  + K G  ++   ++ +M K+   PD    N 
Sbjct: 296 LDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNE 355

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R G  E+  + +  M +     +  TY  +IN YG+ G  +K    F+ +    
Sbjct: 356 LVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESG 415

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+ + L    +K      +++  +M   GC P+  T   +++ C ++   + V 
Sbjct: 416 CVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVN 475

Query: 235 TLVRTM 240
            + R M
Sbjct: 476 RVFREM 481



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 5/191 (2%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           +++   +L AYS+ G   +   +  +M K+GL P     N ML++YG++G+ + K+  +L
Sbjct: 209 VRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLL 268

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I+  GR G +++    F  L ++       T+ S L  + + 
Sbjct: 269 DEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKA 328

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTAL 248
            +Y   L I +EM    C PD  T   L++A       E+  + + T++R          
Sbjct: 329 GIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITY 388

Query: 249 PIYFNLYGEKG 259
               N YG+ G
Sbjct: 389 TTVINAYGKAG 399



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 79/173 (45%), Gaps = 7/173 (4%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + P+L +F  + SI+     +  AH +   ++  G+ P + ++  L+  Y++ G   K E
Sbjct: 626 YKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGE 685

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++  + KSG KPD    N+++  + R G  ++    L+ M        I TYN  +  Y
Sbjct: 686 EILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGY 745

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
              G   ++E +   +     +P+ +T+   +  Y + K Y+  ++    + +
Sbjct: 746 SGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITE 798



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 69/160 (43%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +M+  G  P   +   +L      G       V  +M   G +P+    N+++  YGR G
Sbjct: 445 DMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCG 504

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
               + ++   M K  +   ++TYN L+N   R G  E  E +   + +K  KP+  +++
Sbjct: 505 SQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYS 564

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             L  Y++    R   +I EE+ +   +P     + L+ A
Sbjct: 565 LMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLA 604



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 5/160 (3%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           K D  ++  M+ + GR  Q      +L  +    Y+ D+  +  +++ Y R G  E+   
Sbjct: 171 KIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAIT 230

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           +F+ +    L P +VT+   L  Y +  + + + L + +EM   G   D  T   +ISAC
Sbjct: 231 MFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISAC 290

Query: 225 SSEDQIEQVTTLVRTMHKDMKTALPIYFN----LYGEKGV 260
             E  +++       +  +   A    +N    ++G+ G+
Sbjct: 291 GREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGI 330


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHM---LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
            +DA A+    + LG  P   S +   +++  + K+G V     ++++M + G++ +   
Sbjct: 112 LADAAAIL--TRALGSCPGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALC 169

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            NS+L+ Y R     +++E+L  ME G   A + TY IL++     G I K+E +   + 
Sbjct: 170 YNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMK 229

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           AK +  DV  +T+ + AY R    RR  E+F+E +  G  P+  T  VLI+      Q+E
Sbjct: 230 AKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQME 289

Query: 232 QVTTLVRTMH 241
               L+  M 
Sbjct: 290 AAEMLLADMQ 299



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 83/175 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +   M   G+ P   ++  L++ + K G++ +   +  +M   G  P     N 
Sbjct: 358 MAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNV 417

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ Y + G   + E     MEK     D+ TY  L++ +   G ++    LF+ +  + 
Sbjct: 418 MMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRG 477

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
            +P+VV +T+ ++  +++       +++++M+ AG  PD      L+ +  ++++
Sbjct: 478 TEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTDNR 532



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+E    GI P  +++ +L+  + K G +   E ++  M   G+  +  + N+M++
Sbjct: 256 ASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMID 315

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  +   +V  AMEK     D+ TYN L     R   + + + L   +  K + P
Sbjct: 316 GYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPP 375

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + VT+T+ ++ + ++        +F EM   G  P   T  V++     +  I +     
Sbjct: 376 NYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFR 435

Query: 238 RTMHK 242
           + M K
Sbjct: 436 KEMEK 440



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 82/180 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E M+  GI  T+ ++ +L+ + S  G+++K E V+++M    +  D ++  +++N Y 
Sbjct: 189 LLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYC 248

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G   +  EV           +  TY +LIN + + G +E  E L   +  + +  + +
Sbjct: 249 RAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQI 308

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + +  Y R+ +    L++   M   G   D  T   L       +++ +  TL+  M
Sbjct: 309 IFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIM 368



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 2/195 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S   AV +EMK   +   +  +  ++ AY + GNV +   V ++   +G++P+      
Sbjct: 218 ISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGV 277

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + ++GQ E  E +L  M+      +   +N +I+ Y R G ++    +  ++    
Sbjct: 278 LINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMG 337

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ DV T+ +      R         +   MI+ G  P+  T   LIS    E  + +  
Sbjct: 338 IELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEAR 397

Query: 235 TLVRTMHKDMKTALP 249
            L R M    K A+P
Sbjct: 398 RLFREMAG--KGAMP 410



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 85/187 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  V   M+++GI   + ++  L     +   +A+ + +++ M + G+ P+     ++
Sbjct: 324 DNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTL 383

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++++ + G   +   +   M        + TYN++++ Y + G I + E   + +  K L
Sbjct: 384 ISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGL 443

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+ S +  +         L++FEEM   G  P+      LIS  + E + E+   
Sbjct: 444 VPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQ 503

Query: 236 LVRTMHK 242
           L   M K
Sbjct: 504 LYDDMLK 510


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 89/185 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH +F  M  +       ++M +L +   +G +A+   ++N+ H+  +  DT + N++
Sbjct: 377 SEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTV 436

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
               GRL Q   + ++   M++     DI TYNILI+ YGR G ++    +F+ L     
Sbjct: 437 FTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNC 496

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDV+++ S +    +          F+EM + G  PD  T   LI      D++E   +
Sbjct: 497 QPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACS 556

Query: 236 LVRTM 240
           L   M
Sbjct: 557 LFDEM 561



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           + TA  +   V+    +  +M + G  PD F  N +++ YGR G+ +   ++   +E  +
Sbjct: 436 VFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSN 495

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+ +YN LIN  G+ G +++    F+ +  K L PDVVT+++ +  + +        
Sbjct: 496 CQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMAC 555

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +F+EMI  GC P+  T  +L+       +  +   L
Sbjct: 556 SLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDL 592



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 95/199 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F D       +K+ G+     S+  LL  Y +  +  K  GV   M + G   D F  N
Sbjct: 168 FFGDLDRCVGLVKKWGLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFN 227

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L+   +  + +K  +V   M++     D  TY I+I + G+ G  ++   LFQ++  K
Sbjct: 228 MLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEK 287

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
               +++ + + + A ++ ++  + + +F +M++ GC P+  T  VL++   +E Q+ ++
Sbjct: 288 GFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKL 347

Query: 234 TTLVRTMHKDMKTALPIYF 252
             +V    K M   +  YF
Sbjct: 348 DNIVEMSKKYMNKQIYAYF 366



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 80/165 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S  H ++E+MK+ G  P + ++ +L+++Y + G V     +  ++  S  +PD    NS+
Sbjct: 447 SHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSL 506

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  G+ G  ++       M++     D+ TY+ LI  +G+   +E    LF  + A+  
Sbjct: 507 INCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGC 566

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            P++VT+   L    R       ++++ ++   G  PD  T  VL
Sbjct: 567 SPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 611



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 32/169 (18%)

Query: 104 GLKPDTFVINSMLNLYGRLG---QFEKMEEVLTAMEKGSYAADISTYNILINIYGR---- 156
            LK D F+ N +     R     +FE+ E +L  MEK      IST NILI  +G     
Sbjct: 116 SLKNDPFIYNRLFLTLSRSSSQLRFEQTESLLDDMEKRGVKGSISTVNILIGFFGDLDRC 175

Query: 157 GGFIEKMEGLFQSLPAK-------RLKP------------------DVVTWTSRLAAYSR 191
            G ++K    F +   K       RL+                   D+  +   L A ++
Sbjct: 176 VGLVKKWGLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAK 235

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +   +  ++FE+M    C PD  T  ++I       + ++   L + M
Sbjct: 236 DQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAM 284


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 91/182 (50%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +  +EM   G  P   +   L+    + G+V     +++ M + G  PD F  NS++   
Sbjct: 302 SFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGL 361

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +LG+ E+  E+L  M    ++ +  TYN LI+   +   +E+   L + L +K + PDV
Sbjct: 362 CKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 421

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+ S +        +R  +E+FEEM   GC+PD  T  +LI +  S  ++E+  +L++ 
Sbjct: 422 CTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKE 481

Query: 240 MH 241
           M 
Sbjct: 482 ME 483



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 5/211 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEMK  G  P   ++ +L+ +    G + +   ++ +M  SG   +    N++++
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLID 499

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  + E+ EE+   ME    + ++ TYN LI+   +   +E+   L   +  + LKP
Sbjct: 500 GFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKP 559

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+ S L  + R    ++  +I + M   GC PD  T   LI   S   ++E  + L+
Sbjct: 560 DKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLL 619

Query: 238 RTMH-KDM----KTALPIYFNLYGEKGVARS 263
           RT+  K M    +T  P+   L+ EK  + +
Sbjct: 620 RTVQLKGMVLAPQTYNPVIKALFREKRTSEA 650



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 2/188 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM+  GI+  + ++  L+    K   V +   +++QM   GLKPD F  NS+L
Sbjct: 509 EAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLL 568

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R G  +K  +++  M       D  TY  LI    + G +E    L +++  K + 
Sbjct: 569 TYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMV 628

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQI-EQVT 234
               T+   + A  R+K     + +F EM++ G  PD  T KV+    CS    I E V 
Sbjct: 629 LAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVD 688

Query: 235 TLVRTMHK 242
            LV    K
Sbjct: 689 FLVEMTDK 696



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 1/190 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVIN 113
           F     V +EMK  G      + ++L+ +Y+K     +   V++ M +  GLK D F  N
Sbjct: 121 FGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYN 180

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +LN+     + + +E V + M       D++T+NILI    R   I     + + + + 
Sbjct: 181 FLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSY 240

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD  T+T+ +  +  +      L I E+M+ AGC     T  VL+     E +IE+V
Sbjct: 241 GLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEV 300

Query: 234 TTLVRTMHKD 243
            + +  M  +
Sbjct: 301 LSFIDEMSNE 310



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 82/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + EEM   G++P  K+   L+  + + GN+     +  QM  +G       +N +++
Sbjct: 230 AILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVH 289

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+ E++   +  M    +  D  T+N L+N   R G ++    +   +  +   P
Sbjct: 290 GYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDP 349

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ S +    +       +EI  +MI     P+  T   LIS    E+Q+E+ T L 
Sbjct: 350 DIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELA 409

Query: 238 RTM 240
           R +
Sbjct: 410 RVL 412



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 78/172 (45%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           GI P + +   L+     T N      +  +M   G  PD F  N +++     G+ E+ 
Sbjct: 416 GILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEA 475

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             +L  ME    + ++ TYN LI+ + +   IE+ E +F  +  + +  +VVT+ + +  
Sbjct: 476 LSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDG 535

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             + +      ++ ++M+  G  PD  T   L++       I++   +V+TM
Sbjct: 536 LCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTM 587



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 70/172 (40%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           GI P + +  +L+ A  +   +     ++ +M   GL PD     +++  +   G     
Sbjct: 206 GIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGA 265

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             +   M      +   T N+L++ Y + G IE++      +  +  +PD  T+ S +  
Sbjct: 266 LRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNG 325

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             R    +  LEI + M+  G  PD  T   LI       ++E+   ++  M
Sbjct: 326 LCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQM 377


>gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 691

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 89/172 (51%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           +T  +  +  S +   A+AVFE M R GI P+++++  LL A+ + G+      +   M 
Sbjct: 463 YTAMIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTLLDAFRRVGDTETLMKIWKLMM 522

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
              +K      N +++ + + G F +  +V++   K      + TYN+LIN Y RGG   
Sbjct: 523 SEKVKGTQVTFNILVDGFAKQGLFMEARDVISEFGKIGLQPTVMTYNMLINAYARGGLDS 582

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +  L + + A RL+PD +T+++ + A+ R + ++R     +EM+ +G   D
Sbjct: 583 NIPQLLKEMEALRLRPDSITYSTVIYAFVRVRDFKRAFFYHKEMVKSGYVMD 634



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 2/212 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +  EM++ GI+     +  L+ AY K+  V + EG+  +M   G+KP     N 
Sbjct: 335 LSEALIIQSEMEKKGISSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTAVTFNI 394

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAK 173
           ++  Y R  Q + +E +L  M+      + ++Y  LI+ YGR   +  M    F  +   
Sbjct: 395 LMYAYSRRMQPKIVESLLAEMKDFGLKPNANSYTCLISAYGRQKKMSDMAADAFLKMKKV 454

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +KP   ++T+ + AYS    + +   +FE MI  G  P   T   L+ A       E +
Sbjct: 455 GIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTLLDAFRRVGDTETL 514

Query: 234 TTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
             + + M  +      + FN+  + G A+  L
Sbjct: 515 MKIWKLMMSEKVKGTQVTFNILVD-GFAKQGL 545



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 1/177 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
           + DA  V+E M+  G+ P   +  +++    K G+ AK       +M++ G++       
Sbjct: 264 YKDAWKVYESMETDGVLPDHVTCSIMIIGMRKLGHSAKDAWQFFEKMNQKGVRWGKEAFG 323

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  +   G   +   + + MEK   +++   YN L++ Y +   +E+ EGLF  + AK
Sbjct: 324 ALIKSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAK 383

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            +KP  VT+   + AYSR+   +    +  EM D G  P+  +   LISA   + ++
Sbjct: 384 GIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANSYTCLISAYGRQKKM 440



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 52/99 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  V  E  ++G+ PT+ ++ +L+ AY++ G  +    ++ +M    L+PD+   ++
Sbjct: 546 FMEARDVISEFGKIGLQPTVMTYNMLINAYARGGLDSNIPQLLKEMEALRLRPDSITYST 605

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           ++  + R+  F++       M K  Y  DIS+Y  L  I
Sbjct: 606 VIYAFVRVRDFKRAFFYHKEMVKSGYVMDISSYRKLRAI 644


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE M R G+  T+ ++  L+ A SK G V + + + ++  + G++PD  + N+++N
Sbjct: 233 ALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 292

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  ++  E++  MEK   A D  TYN L+      G +++   L   +  + ++P
Sbjct: 293 SHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQP 352

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + ++ YS K   +  L I  EM++ G  P   T   LI       Q +    +V
Sbjct: 353 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 412

Query: 238 RTM 240
           + M
Sbjct: 413 KEM 415



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 83/173 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   +F+E  R GI P +  +  L+ ++S +GN+ +   ++ +M K  + PD    N+++
Sbjct: 267 ETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLM 326

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                LG+ ++  +++  M K     D+ TYN LI+ Y   G ++    +   +  K   
Sbjct: 327 RGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN 386

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           P ++T+ + +    +         + +EM++ G  PD  T   LI   ++ED+
Sbjct: 387 PTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDE 439



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 81/177 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A+ + EEM   G+ P + ++ +L+  + K GNV K   +   M + G++       S+
Sbjct: 196 TEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSL 255

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + GQ ++ +++     +     D+  YN LIN +   G I++   +   +  KR+
Sbjct: 256 IYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI 315

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            PD VT+ + +             ++ +EM   G  PD  T   LIS  S +  ++ 
Sbjct: 316 APDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKD 372



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 81/180 (45%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           + M   G+  T+ ++ LL+ A    G   +   ++ +M   GL PD F  N ++N + + 
Sbjct: 168 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE 227

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  +K  E+   M +    A + TY  LI    + G +++ + LF     + ++PD+V +
Sbjct: 228 GNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 287

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + + ++S      R  EI  EM      PD  T   L+       ++++   L+  M K
Sbjct: 288 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTK 347



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 37/222 (16%)

Query: 58  AHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSM 115
           A  +  EM+ R GI P   ++  +++ + K G V +   V ++M   G +KP+  + N++
Sbjct: 91  ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNAL 150

Query: 116 LNLYGRLGQFE-------KMEEVLTAMEKGSY---------------------------- 140
           +  Y   G+ +       +M E   AM   +Y                            
Sbjct: 151 IGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGL 210

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
           A D+ TYNILIN + + G ++K   +F+++  + ++  VVT+TS + A S+K   +   +
Sbjct: 211 APDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDK 270

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +F+E +  G  PD      LI++ S+   I++   ++  M K
Sbjct: 271 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 312


>gi|413934892|gb|AFW69443.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
          Length = 561

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 100/200 (50%), Gaps = 4/200 (2%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +M   G+    +++ LLL AY++ G +     V+ +M + G++ DT   + ++ LY   G
Sbjct: 148 QMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNG 207

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            ++K  +++  M++     D+  Y+ LI+ +G+ G +     +F  + A+ ++PD+ TW 
Sbjct: 208 MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWN 267

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-- 241
           + +  + R    +R L  F  M + G YPD     ++IS    + + +++  L   M+  
Sbjct: 268 ALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNR 327

Query: 242 --KDMKTALPIYFNLYGEKG 259
             K+      I  ++YG+ G
Sbjct: 328 GFKESGAVYAILVDIYGQYG 347



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 88/204 (43%), Gaps = 24/204 (11%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  +F++M+  G+ P + +   L+  + + GN+ +       M + G+ PD  +   
Sbjct: 244 LADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVM 303

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G  G++++++++   M    +    + Y IL++IYG+ G     +    +L A+ 
Sbjct: 304 IISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAEN 363

Query: 175 ------------------------LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
                                    +P++V   S + A+     +   L +F+ + D+G 
Sbjct: 364 TQLLPRVFCVIANAYAQQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSGM 423

Query: 211 YPDGGTAKVLISACSSEDQIEQVT 234
            PD  T   L+       + E+V+
Sbjct: 424 SPDVVTYTTLMKTFMRAKKFEKVS 447



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 80/198 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D+  V  EM+R GI      + +L+  Y   G   K   ++ +M + G++ D  + + 
Sbjct: 174 LEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNGMWKKATDLVMEMQEVGVELDVKIYSG 233

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ GQ      +   M       DIST+N LI  + R G +++    F S+  + 
Sbjct: 234 LIDTFGKYGQLADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEG 293

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD   +   ++    +  +    ++F+ M + G    G    +L+             
Sbjct: 294 MYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQ 353

Query: 235 TLVRTMHKDMKTALPIYF 252
             +  +  +    LP  F
Sbjct: 354 DCIAALRAENTQLLPRVF 371


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 96/185 (51%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A +VF  +    +   ++++ +L+   S+ G + +  G+ +++ + GL P+ F  NS+
Sbjct: 582 TEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSL 641

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G  +K  ++L  M       DI TYNILI+   + G IE+ + LF  +  + L
Sbjct: 642 ISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 701

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ VT+ + +  Y + K      ++ EEM+  G  PD     V+++ C  E++ E+   
Sbjct: 702 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALD 761

Query: 236 LVRTM 240
           L + M
Sbjct: 762 LFQEM 766



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 85/181 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EMK+  + PT+ ++ +++    + GN+     ++ +M  +GLKP+  V  +++ 
Sbjct: 409 AFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMT 468

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+ E+   +L  M +     D+  YN LI  + +   +E+       +  +RL+P
Sbjct: 469 AHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRP 528

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+ + +  YS+          F EM+  G  P+ G    LI     E  + +  ++ 
Sbjct: 529 NAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVF 588

Query: 238 R 238
           R
Sbjct: 589 R 589



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 94/196 (47%), Gaps = 2/196 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  EM  +G+ P   ++  L+  + + G++ +   + ++M   G++ +  + N++L
Sbjct: 303 EAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLL 362

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   + G+ EK  E++  M +     D  TY++LI  + RG  + +   L   +  ++L 
Sbjct: 363 NGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLA 422

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P V+T++  +    R    +    I  EM+  G  P+      L++A + E ++E+   +
Sbjct: 423 PTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMI 482

Query: 237 VRTMHKDMKTALPIYF 252
           +  M +  +  LP  F
Sbjct: 483 LERMRE--QGILPDVF 496



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F++++  G+TP   ++  ++  Y K+ N      ++ +M   G+ PD F+ N +LN
Sbjct: 689 AKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILN 748

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +FEK  ++   M +  +A+ +S +N LI  Y + G +++   L + +  K+  P
Sbjct: 749 FCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIEKQFIP 807

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + VT+TS +    +  +      ++ EM +    P   T   L+    +   + +V+ L 
Sbjct: 808 NHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALF 867

Query: 238 RTM 240
             M
Sbjct: 868 EEM 870



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   GI   +     LL    K G + K   ++ +M + G++PD+   + ++ 
Sbjct: 339 AFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIE 398

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R     +  E+L  M+K   A  + TY+++IN   R G ++    + + +    LKP
Sbjct: 399 GHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKP 458

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V +T+ + A++++        I E M + G  PD      LI       ++E+  T +
Sbjct: 459 NAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYL 518

Query: 238 RTM 240
             M
Sbjct: 519 MEM 521



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A     EM    + P   ++   +  YSK G +   +   N+M   G+ P+  +  +
Sbjct: 511 MEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTA 570

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + G   +   V   +       D+ TY++LI+   R G + +  G+F  L  K 
Sbjct: 571 LIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKG 630

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+  T+ S ++   ++    +  ++ EEM   G  PD  T  +LI       +IE+  
Sbjct: 631 LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAK 690

Query: 235 TL 236
            L
Sbjct: 691 NL 692



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 35/217 (16%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM--- 115
           +A+  EM   G+ P    +  L+TA++K G V +   ++ +M + G+ PD F  NS+   
Sbjct: 445 NAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIG 504

Query: 116 --------------------------------LNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                                           ++ Y + G+ E  +     M       +
Sbjct: 505 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 564

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +  Y  LI  + + G + +   +F+ + ++R+  DV T++  +   SR         IF 
Sbjct: 565 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFS 624

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           E+ + G  P+  T   LIS    +  +++ + L+  M
Sbjct: 625 ELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 5/201 (2%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  VF   K     P++ S   LL    K   V     V + M    + PD +   
Sbjct: 160 FLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYT 219

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M++ + ++G  +  + VL  M +   + ++ TYN++I    R   +++   L +S+  K
Sbjct: 220 NMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDK 279

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD+ T+   +  +  +K  R    +  EMID G  P+  T   LI     +  IEQ 
Sbjct: 280 GLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQA 339

Query: 234 TTLVRTMHKDMKTALPIYFNL 254
             +     KD   A  I  NL
Sbjct: 340 FRI-----KDEMVACGIEANL 355



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 7/205 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PNL  +   I          +A  +   M   G+ P + ++ +L+  +       + + 
Sbjct: 247 SPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKL 306

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M   GLKP+    N++++ + R G  E+   +   M      A++  +N L+N   
Sbjct: 307 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVC 366

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +EK   + Q +  K ++PD  T++  +  + R +   R  E+ +EM      P   
Sbjct: 367 KAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 426

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T  V+I+       ++    ++R M
Sbjct: 427 TYSVIINGLCRCGNLQGTNAILREM 451



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 100/230 (43%), Gaps = 12/230 (5%)

Query: 30  SHFMLINFLLLQHTPNLFVFIFSIY---------FSDAHAVFEEMKRLGITPTMKSHMLL 80
           + F L+  +LL+  P    FI+++          F  A  +F+EM   G   T+ S   L
Sbjct: 723 AAFQLLEEMLLRGVPP-DAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTL 780

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
           +  Y K+G + +   ++ +M +    P+     S+++   + G   + + +   M++ + 
Sbjct: 781 IEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNV 840

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
                TY  L++ Y   G + ++  LF+ + AK ++PD +T+   + AY R+       +
Sbjct: 841 MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACK 900

Query: 201 IFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVRTMHKDMKTALP 249
           + +E++  G          LI A C  E+  E +  L        +  LP
Sbjct: 901 LKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLP 950



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + EEM   GI P + ++ +L+    K G + + + + + +   GL P+     +M++
Sbjct: 654 ASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVD 713

Query: 118 LYGR----LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            Y +       F+ +EE+L          D   YN+++N   +    EK   LFQ +  K
Sbjct: 714 GYCKSKNPTAAFQLLEEMLLR----GVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK 769

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
                 V++ + +  Y +    +    + EEMI+    P+  T   LI 
Sbjct: 770 GF-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID 817



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 72/175 (41%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ +Y K G + +   V         +P     NS+L    +  + E   +V   M   
Sbjct: 150 MLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAH 209

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               D+ TY  +I+ + + G ++  + +   +  K   P++VT+   +    R +L    
Sbjct: 210 KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEA 269

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           +E+   M+D G  PD  T  +LI+    E +  +   ++  M        PI +N
Sbjct: 270 IELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYN 324



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 6/153 (3%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G++ KC    N        P++ + + +++ Y ++G   +   V    +   +   + + 
Sbjct: 130 GSIVKCYRSCNG------SPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSC 183

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           N L+    +G  +E    +F  + A ++ PDV T+T+ ++A+ +    +    +  EM +
Sbjct: 184 NSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGE 243

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            GC P+  T  V+I        +++   L R+M
Sbjct: 244 KGCSPNLVTYNVIIGGLCRARLLDEAIELKRSM 276



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 79/188 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A+ + EEM      P   ++  L+    K G + + + +  +M +  + P      S
Sbjct: 790 LQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTS 849

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ Y  +G   ++  +   M       D  TY ++I+ Y R G + +   L   +  K 
Sbjct: 850 LLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG 909

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +   V  + + + A  +K+ +   L++  E+ ++G      T  V+         +++  
Sbjct: 910 MPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAA 969

Query: 235 TLVRTMHK 242
            ++R+M K
Sbjct: 970 EVLRSMVK 977


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 96/185 (51%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A +VF  +    +   ++++ +L+   S+ G + +  G+ +++ + GL P+ F  NS+
Sbjct: 573 TEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSL 632

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G  +K  ++L  M       DI TYNILI+   + G IE+ + LF  +  + L
Sbjct: 633 ISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 692

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ VT+ + +  Y + K      ++ EEM+  G  PD     V+++ C  E++ E+   
Sbjct: 693 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALD 752

Query: 236 LVRTM 240
           L + M
Sbjct: 753 LFQEM 757



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 85/181 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EMK+  + PT+ ++ +++    + GN+     ++ +M  +GLKP+  V  +++ 
Sbjct: 400 AFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMT 459

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+ E+   +L  M +     D+  YN LI  + +   +E+       +  +RL+P
Sbjct: 460 AHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRP 519

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+ + +  YS+          F EM+  G  P+ G    LI     E  + +  ++ 
Sbjct: 520 NAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVF 579

Query: 238 R 238
           R
Sbjct: 580 R 580



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 94/196 (47%), Gaps = 2/196 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  EM  +G+ P   ++  L+  + + G++ +   + ++M   G++ +  + N++L
Sbjct: 294 EAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLL 353

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   + G+ EK  E++  M +     D  TY++LI  + RG  + +   L   +  ++L 
Sbjct: 354 NGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLA 413

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P V+T++  +    R    +    I  EM+  G  P+      L++A + E ++E+   +
Sbjct: 414 PTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMI 473

Query: 237 VRTMHKDMKTALPIYF 252
           +  M +  +  LP  F
Sbjct: 474 LERMRE--QGILPDVF 487



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F++++  G+TP   ++  ++  Y K+ N      ++ +M   G+ PD F+ N +LN
Sbjct: 680 AKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILN 739

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +FEK  ++   M +  +A+ +S +N LI  Y + G +++   L + +  K+  P
Sbjct: 740 FCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIEKQFIP 798

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + VT+TS +    +  +      ++ EM +    P   T   L+    +   + +V+ L 
Sbjct: 799 NHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALF 858

Query: 238 RTM 240
             M
Sbjct: 859 EEM 861



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   GI   +     LL    K G + K   ++ +M + G++PD+   + ++ 
Sbjct: 330 AFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIE 389

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R     +  E+L  M+K   A  + TY+++IN   R G ++    + + +    LKP
Sbjct: 390 GHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKP 449

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V +T+ + A++++        I E M + G  PD      LI       ++E+  T +
Sbjct: 450 NAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYL 509

Query: 238 RTM 240
             M
Sbjct: 510 MEM 512



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A     EM    + P   ++   +  YSK G +   +   N+M   G+ P+  +  +
Sbjct: 502 MEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTA 561

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + G   +   V   +       D+ TY++LI+   R G + +  G+F  L  K 
Sbjct: 562 LIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKG 621

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+  T+ S ++   ++    +  ++ EEM   G  PD  T  +LI       +IE+  
Sbjct: 622 LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAK 681

Query: 235 TL 236
            L
Sbjct: 682 NL 683



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 35/217 (16%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM--- 115
           +A+  EM   G+ P    +  L+TA++K G V +   ++ +M + G+ PD F  NS+   
Sbjct: 436 NAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIG 495

Query: 116 --------------------------------LNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                                           ++ Y + G+ E  +     M       +
Sbjct: 496 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 555

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +  Y  LI  + + G + +   +F+ + ++R+  DV T++  +   SR         IF 
Sbjct: 556 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFS 615

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           E+ + G  P+  T   LIS    +  +++ + L+  M
Sbjct: 616 ELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 79/172 (45%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P + ++ +L+  +       + + ++ +M   GLKP+    N++++ + R G  E+ 
Sbjct: 271 GLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQA 330

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             +   M      A++  +N L+N   + G +EK   + Q +  K ++PD  T++  +  
Sbjct: 331 FRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEG 390

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + R +   R  E+ +EM      P   T  V+I+       ++    ++R M
Sbjct: 391 HCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREM 442



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 17/199 (8%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-----------------S 103
           VF+ M    + P + ++  +++A+ K GNV   + V+ +M +                  
Sbjct: 211 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDK 270

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           GL PD +  + ++N +    +  + + +L  M       +  TYN LI+ + R G IE+ 
Sbjct: 271 GLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQA 330

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             +   + A  ++ +++ W + L    +     + LEI +EM++ G  PD  T  +LI  
Sbjct: 331 FRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEG 390

Query: 224 CSSEDQIEQVTTLVRTMHK 242
                 + +   L+  M K
Sbjct: 391 HCRGQNMARAFELLDEMKK 409



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 101/228 (44%), Gaps = 17/228 (7%)

Query: 30  SHFMLINFLLLQHTPNLFVFIFSIY---------FSDAHAVFEEMKRLGITPTMKSHMLL 80
           + F L+  +LL+  P    FI+++          F  A  +F+EM   G   T+ S   L
Sbjct: 714 AAFQLLEEMLLRGVPP-DAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTL 771

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
           +  Y K+G + +   ++ +M +    P+     S+++   + G   + + +   M++ + 
Sbjct: 772 IEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNV 831

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
                TY  L++ Y   G + ++  LF+ + AK ++PD +T+   + AY R+       +
Sbjct: 832 MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACK 891

Query: 201 IFEEMIDAGCYPDGG------TAKVLISACSSEDQIEQVTTLVRTMHK 242
           + +E++  G     G      T  V+         +++   ++R+M K
Sbjct: 892 LKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVK 939



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + EEM   GI P + ++ +L+    K G + + + + + +   GL P+     +M++
Sbjct: 645 ASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVD 704

Query: 118 LYGR----LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            Y +       F+ +EE+L          D   YN+++N   +    EK   LFQ +  K
Sbjct: 705 GYCKSKNPTAAFQLLEEMLLR----GVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK 760

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
                 V++ + +  Y +    +    + EEMI+    P+  T   LI 
Sbjct: 761 GF-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID 808



 Score = 41.2 bits (95), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 23/183 (12%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G++ KC    N        P++ + + +++ Y ++G   +   V    +   +   + + 
Sbjct: 139 GSIVKCYRSCNG------SPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSC 192

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY-----------------S 190
           N L+    +G  +E    +F  + A ++ PDV T+T+ ++A+                  
Sbjct: 193 NSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGE 252

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
           + +L    +E+   M+D G  PD  T  +LI+    E +  +   ++  M        PI
Sbjct: 253 KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI 312

Query: 251 YFN 253
            +N
Sbjct: 313 TYN 315



 Score = 40.8 bits (94), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 23/201 (11%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  VF   K     P++ S   LL    K   V     V + M    + PD +   
Sbjct: 169 FLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYT 228

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M++ + ++G  +  + VL  M + +   D                 E +E L +S+  K
Sbjct: 229 NMISAHCKVGNVKDAKRVLLEMGEKARLLD-----------------EAIE-LKRSMVDK 270

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD+ T+   +  +  +K  R    +  EMID G  P+  T   LI     +  IEQ 
Sbjct: 271 GLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQA 330

Query: 234 TTLVRTMHKDMKTALPIYFNL 254
             +     KD   A  I  NL
Sbjct: 331 FRI-----KDEMVACGIEANL 346


>gi|356502612|ref|XP_003520112.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 697

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 86/163 (52%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+A FE M+  GI P+++++  LL A+   G+      +   M    ++      N +++
Sbjct: 481 AYAAFENMQNEGIKPSIETYTTLLNAFRHAGDAQTLMEIWKLMISEKVEGTGATFNILVD 540

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G F +  EV++   K      + TYN+LIN Y RGG   K+  L + +   +LKP
Sbjct: 541 GFAKQGLFMEAREVISEFGKVGLKPTVVTYNMLINAYARGGQHSKLPQLLKEMAVLKLKP 600

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           D VT+++ + A+ R + +RR     ++MI +G   DGG+ + L
Sbjct: 601 DSVTYSTMIFAFVRVRDFRRAFFYHKQMIKSGQMMDGGSYQTL 643



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 1/168 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSM 115
           DA  V+E M+   I P   +  +++T   + G+ AK       +M++ G++    V+ ++
Sbjct: 267 DAWKVYESMETENIHPDHMTCSIMVTVMRELGHSAKDAWQFFEKMNRKGVRWSEEVLGAL 326

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N +   G   +   + + MEK   ++    YN L++ + +   IE  EGLF  + AK +
Sbjct: 327 INSFCVEGLRRQALIIQSEMEKKGVSSSAIVYNTLMDAFCKSNHIEAAEGLFVEMKAKGI 386

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           KP   T+   + AYSR+   +   ++ EEM D G  P+  +   LI A
Sbjct: 387 KPIAATYNILMHAYSRRMQPKIVEKLLEEMQDVGLKPNATSYTCLIIA 434



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 2/182 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            F  S +   A  +F EMK  GI P   ++ +L+ AYS+       E ++ +M   GLKP
Sbjct: 364 AFCKSNHIEAAEGLFVEMKAKGIKPIAATYNILMHAYSRRMQPKIVEKLLEEMQDVGLKP 423

Query: 108 DTFVINSMLNLYGRLGQFEKM--EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +      ++  YG+      M   +    M+K        +Y  LI+ Y   G  EK   
Sbjct: 424 NATSYTCLIIAYGKQKNMSDMAAADAFLKMKKVGVKPTSQSYTALIHAYSVSGLHEKAYA 483

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            F+++  + +KP + T+T+ L A+      +  +EI++ MI       G T  +L+   +
Sbjct: 484 AFENMQNEGIKPSIETYTTLLNAFRHAGDAQTLMEIWKLMISEKVEGTGATFNILVDGFA 543

Query: 226 SE 227
            +
Sbjct: 544 KQ 545



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 2/162 (1%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM++ G++ +   +  L+ A+ K+ ++   EG+  +M   G+KP     N +++ Y R  
Sbjct: 345 EMEKKGVSSSAIVYNTLMDAFCKSNHIEAAEGLFVEMKAKGIKPIAATYNILMHAYSRRM 404

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL--KPDVVT 181
           Q + +E++L  M+      + ++Y  LI  YG+   +  M      L  K++  KP   +
Sbjct: 405 QPKIVEKLLEEMQDVGLKPNATSYTCLIIAYGKQKNMSDMAAADAFLKMKKVGVKPTSQS 464

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +T+ + AYS   L+ +    FE M + G  P   T   L++A
Sbjct: 465 YTALIHAYSVSGLHEKAYAAFENMQNEGIKPSIETYTTLLNA 506



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 2/182 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK--CEGVINQMHKSGLKPDTFVINSMLNL 118
           + EEM+ +G+ P   S+  L+ AY K  N++         +M K G+KP +    ++++ 
Sbjct: 412 LLEEMQDVGLKPNATSYTCLIIAYGKQKNMSDMAAADAFLKMKKVGVKPTSQSYTALIHA 471

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           Y   G  EK       M+       I TY  L+N +   G  + +  +++ + +++++  
Sbjct: 472 YSVSGLHEKAYAAFENMQNEGIKPSIETYTTLLNAFRHAGDAQTLMEIWKLMISEKVEGT 531

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
             T+   +  ++++ L+    E+  E    G  P   T  +LI+A +   Q  ++  L++
Sbjct: 532 GATFNILVDGFAKQGLFMEAREVISEFGKVGLKPTVVTYNMLINAYARGGQHSKLPQLLK 591

Query: 239 TM 240
            M
Sbjct: 592 EM 593


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE M R G+  T+ ++  L+ A SK G V + + + ++  + G++PD  + N+++N
Sbjct: 346 ALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 405

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  ++  E++  MEK   A D  TYN L+      G +++   L   +  + ++P
Sbjct: 406 SHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQP 465

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + ++ YS K   +  L I  EM++ G  P   T   LI       Q +    +V
Sbjct: 466 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 525

Query: 238 RTM 240
           + M
Sbjct: 526 KEM 528



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 82/169 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+E  R GI P +  +  L+ ++S +GN+ +   ++ +M K  + PD    N+++    
Sbjct: 384 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLC 443

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            LG+ ++  +++  M K     D+ TYN LI+ Y   G ++    +   +  K   P ++
Sbjct: 444 LLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLL 503

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           T+ + +    +         + +EM++ G  PD  T   LI   ++ED+
Sbjct: 504 TYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDE 552



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 37/219 (16%)

Query: 61  VFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNL 118
           +  EM+ R GI P   ++  +++ + K G V +   V ++M   G +KP+  + N+++  
Sbjct: 207 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGG 266

Query: 119 YGRLGQFE-------KMEEVLTAMEKGSY----------------------------AAD 143
           Y   G+ +       +M E   AM   +Y                            A D
Sbjct: 267 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALD 326

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TYNILIN + + G ++K   +F+++  + ++  VVT+TS + A S+K   +   ++F+
Sbjct: 327 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFD 386

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           E +  G  PD      LI++ S+   I++   ++  M K
Sbjct: 387 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 425



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 80/178 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A+ + EEM   G+   + ++ +L+  + K GNV K   +   M + G++       S+
Sbjct: 309 TEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSL 368

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + GQ ++ +++     +     D+  YN LIN +   G I++   +   +  KR+
Sbjct: 369 IYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI 428

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            PD VT+ + +             ++ +EM   G  PD  T   LIS  S +  ++  
Sbjct: 429 APDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDA 486



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 80/180 (44%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           + M   G+  T+ ++ LL+ A    G   +   ++ +M   GL  D F  N ++N + + 
Sbjct: 281 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKE 340

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  +K  E+   M +    A + TY  LI    + G +++ + LF     + ++PD+V +
Sbjct: 341 GNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 400

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + + ++S      R  EI  EM      PD  T   L+       ++++   L+  M K
Sbjct: 401 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTK 460



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  + +EM + GI P + ++  L++ YS  G+V     + N+M   G  P     N++
Sbjct: 449 DEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNAL 508

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +    + GQ +  E ++  M +     D STY  LI
Sbjct: 509 IQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 544



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM++  I P   ++  L+      G V +   +I++M K G++PD    N++++
Sbjct: 416 AFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLIS 475

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  +    +   M    +   + TYN LI    + G  +  E + + +    + P
Sbjct: 476 GYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITP 535

Query: 178 DVVTWTS 184
           D  T+ S
Sbjct: 536 DDSTYIS 542


>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
 gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
          Length = 526

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 100/204 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VFEEM   G+ PT K++ +LL A++ +G V + + V   M +  + PD +   +ML
Sbjct: 275 EALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTML 334

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y      E  E+    ++   +  +I TY  LI  Y +   +EKM  +++ +    +K
Sbjct: 335 SAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIK 394

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +    T+ + A  R K +   L  ++EM   G  PD     VL+S  S++D++E+   L
Sbjct: 395 ANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 454

Query: 237 VRTMHKDMKTALPIYFNLYGEKGV 260
               ++       +Y +   E+GV
Sbjct: 455 TGIRNETATIIARVYGSDDDEEGV 478



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 35/231 (15%)

Query: 46  LFVFIFSIYFSDAHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI----- 97
           L  F+    F +A  VFE +   K+  + P  K + +++  Y K GN  K   V      
Sbjct: 159 LKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVG 218

Query: 98  ---------------------------NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
                                      +QM +S ++PD      ++  YGR  + E+   
Sbjct: 219 KGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALS 278

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           V   M           YNIL++ +   G +E+ + +F+S+   R+ PD+ ++T+ L+AY 
Sbjct: 279 VFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYV 338

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
                    + F+ +   G  P+  T   LI   +  + +E++  +   M 
Sbjct: 339 NASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 389



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           ++L+TAY K GN    E V++ + K G  P+     +++  YGR G+    E +   M+ 
Sbjct: 86  LMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQS 145

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR---LKPDVVTWTSRLAAYSRKKL 194
                   TY I++  +  G   ++ E +F++L  ++   LKPD   +   +  Y +   
Sbjct: 146 SGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGN 205

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           Y +  ++F  M+  G      T   L+S  +S  ++ ++
Sbjct: 206 YEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKI 244



 Score = 41.2 bits (95), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 51/115 (44%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  L  ++ +     A   F+ +K  G  P + ++  L+  Y+K  +V K   V  
Sbjct: 327 LWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYE 386

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M  SG+K +  ++ ++++  GR   F         ME      D    N+L+++
Sbjct: 387 KMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSL 441


>gi|326527817|dbj|BAJ88981.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 104/206 (50%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M   G+    +++MLLL AY++ G +     V+ +M + G++ DT   ++++ 
Sbjct: 141 ADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGYSTLVR 200

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LY   G ++K  +++  M++     D+  YN LI+ +G+ G +     +F+ +  + +KP
Sbjct: 201 LYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRGQGIKP 260

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ TW + +  + R    +R L     M + G YPD      +I+    + + +++  L 
Sbjct: 261 DIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINKLGEQGKWDELKELF 320

Query: 238 RTM-HKDMKTALPIY---FNLYGEKG 259
             M ++  K +  IY    ++YG+ G
Sbjct: 321 DKMRNRGFKESGAIYAVLVDIYGQYG 346



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 5/192 (2%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +F+ I +       + +   +F++M+  G   +   + +L+  Y + G+    +  + 
Sbjct: 297 PKIFITIINKLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVA 356

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +    L+    +   + N Y + G  E+   VL  ME      ++   N+LIN +   G
Sbjct: 357 ALKAENLQLSPSIFCVLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAG 416

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              + + +FQ +    + PDVVT+T+ + A+ R K Y +  E++ EM  AGC PD    +
Sbjct: 417 RHLEAQAVFQHIKDSGMSPDVVTYTTLMKAFMRVKRYEKVSEVYSEMERAGCTPDRKARE 476

Query: 219 VLISACSSEDQI 230
           +L  A  + +Q+
Sbjct: 477 MLHDASVTMEQM 488



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 91/184 (49%), Gaps = 2/184 (1%)

Query: 45  NLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           N  +  F  Y   +DA  +FE+M+  GI P +++   L+  + + GN+ +    +  M +
Sbjct: 231 NGLIDTFGKYGQLADARKMFEKMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQE 290

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G+ PD  +  +++N  G  G++++++E+   M    +    + Y +L++IYG+ G    
Sbjct: 291 EGMYPDPKIFITIINKLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRD 350

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            +    +L A+ L+     +     AY+++ L  + + + + M   G  P+     +LI+
Sbjct: 351 AQECVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLIN 410

Query: 223 ACSS 226
           A S+
Sbjct: 411 AFST 414



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 12/205 (5%)

Query: 30  SHFMLINFLLLQHTPN-------LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSH 77
           +H  L + LLLQ   +        ++ +   Y       D+  V  EMKR GI      +
Sbjct: 136 AHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGY 195

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
             L+  Y  +G   K   +I +M + G++ D  + N +++ +G+ GQ     ++   M  
Sbjct: 196 STLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRG 255

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                DI T+N LI  + R G +++      ++  + + PD   + + +     +  +  
Sbjct: 256 QGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINKLGEQGKWDE 315

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLIS 222
             E+F++M + G    G    VL+ 
Sbjct: 316 LKELFDKMRNRGFKESGAIYAVLVD 340



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 69/153 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  +M+  G+ P+  ++  L+ A ++ G   + E ++ +M   GL+PD    N++L    
Sbjct: 74  LLADMQAAGMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYNALLEGLL 133

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
                   + +L  M     A +  TY +L++ Y R G +E    +   +    ++ D  
Sbjct: 134 ARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTA 193

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +++ +  Y    ++++  ++  EM + G   D
Sbjct: 194 GYSTLVRLYRDSGMWKKATDLIMEMQEVGVELD 226


>gi|413934891|gb|AFW69442.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
          Length = 507

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 100/200 (50%), Gaps = 4/200 (2%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +M   G+    +++ LLL AY++ G +     V+ +M + G++ DT   + ++ LY   G
Sbjct: 148 QMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNG 207

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            ++K  +++  M++     D+  Y+ LI+ +G+ G +     +F  + A+ ++PD+ TW 
Sbjct: 208 MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWN 267

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-- 241
           + +  + R    +R L  F  M + G YPD     ++IS    + + +++  L   M+  
Sbjct: 268 ALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNR 327

Query: 242 --KDMKTALPIYFNLYGEKG 259
             K+      I  ++YG+ G
Sbjct: 328 GFKESGAVYAILVDIYGQYG 347



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 88/204 (43%), Gaps = 24/204 (11%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  +F++M+  G+ P + +   L+  + + GN+ +       M + G+ PD  +   
Sbjct: 244 LADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVM 303

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G  G++++++++   M    +    + Y IL++IYG+ G     +    +L A+ 
Sbjct: 304 IISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAEN 363

Query: 175 ------------------------LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
                                    +P++V   S + A+     +   L +F+ + D+G 
Sbjct: 364 TQLLPRVFCVIANAYAQQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSGM 423

Query: 211 YPDGGTAKVLISACSSEDQIEQVT 234
            PD  T   L+       + E+V+
Sbjct: 424 SPDVVTYTTLMKTFMRAKKFEKVS 447



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 80/198 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D+  V  EM+R GI      + +L+  Y   G   K   ++ +M + G++ D  + + 
Sbjct: 174 LEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNGMWKKATDLVMEMQEVGVELDVKIYSG 233

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ GQ      +   M       DIST+N LI  + R G +++    F S+  + 
Sbjct: 234 LIDTFGKYGQLADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEG 293

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD   +   ++    +  +    ++F+ M + G    G    +L+             
Sbjct: 294 MYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQ 353

Query: 235 TLVRTMHKDMKTALPIYF 252
             +  +  +    LP  F
Sbjct: 354 DCIAALRAENTQLLPRVF 371


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 5/202 (2%)

Query: 46  LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           +F  +FS++       +A+  F  M+     P  +S   LL   SK+GN        N M
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 221

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             +G+ P  F  N M++   + G  E    +   M +   + D+ TYN LI+ YG+ G +
Sbjct: 222 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSL 281

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           E++  LF  +      PD++T+   +  Y + +   R  E F EM + G  P+  T   L
Sbjct: 282 EEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTL 341

Query: 221 ISACSSEDQIEQVTTLVRTMHK 242
           I A   E  ++    L+  M +
Sbjct: 342 IDAFCKEGMMQGAIKLLXDMRR 363



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 89/179 (49%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M   GI P++ ++ +++    K G++     +  QM + GL PD    NS+++ YG+
Sbjct: 218 FNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGK 277

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G  E++  +   M+      DI TYN LIN Y +   + +    F  +    LKP+VVT
Sbjct: 278 VGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVT 337

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +++ + A+ ++ + +  +++  +M   G  P+  T   LI A      + +   L+  M
Sbjct: 338 YSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM 396



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 87/189 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             ++  +F +M+ +G++P + ++  L+  Y K G++ +   + N+M   G  PD    N 
Sbjct: 246 LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNG 305

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y +  +  +  E  + M+      ++ TY+ LI+ + + G ++    L   +    
Sbjct: 306 LINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTG 365

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+  T+TS + A  +        ++  +M+ AG   +  T   L+       ++ +  
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 425

Query: 235 TLVRTMHKD 243
            + R+M KD
Sbjct: 426 EVFRSMLKD 434



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 91/193 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F EMK  G+ P + ++  L+ A+ K G +     ++  M ++GL P+ F   S+++
Sbjct: 319 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLID 378

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G   +  ++L  M +     +I TY  L++   + G + + E +F+S+    + P
Sbjct: 379 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 438

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   +T+ +  Y + +     ++I ++M +    PD      +I    S+ ++E+   ++
Sbjct: 439 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLIL 498

Query: 238 RTMHKDMKTALPI 250
             M     +A P+
Sbjct: 499 EEMKSRGISANPV 511



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 90/198 (45%), Gaps = 1/198 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +  ++F EMK +G  P + ++  L+  Y K   + +     ++M  +GLKP+    ++
Sbjct: 281 LEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYST 340

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G  +   ++L  M +     +  TY  LI+   + G + +   L   +    
Sbjct: 341 LIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAG 400

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +K ++VT+T+ L    +        E+F  M+  G  P+      L+      +++E   
Sbjct: 401 VKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAM 460

Query: 235 TLVRTMHK-DMKTALPIY 251
            +++ M + ++K  L +Y
Sbjct: 461 KILKQMTECNIKPDLILY 478



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 78/166 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M+R G+ P   ++  L+ A  K GN+ +   ++N M ++G+K +     ++L+
Sbjct: 354 AIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLD 413

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+  + EEV  +M K   + +   Y  L++ Y +   +E    + + +    +KP
Sbjct: 414 GLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKP 473

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D++ + S +  +  ++       I EEM   G   +   +  +I A
Sbjct: 474 DLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDA 519



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 7/227 (3%)

Query: 40  LQHTPNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           +   P +   I   YF     SDA   F+EM+ +G+  T+ ++ +L+    + G V    
Sbjct: 506 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAV 565

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
               +M   GL+P+  V  S+++        E  +++   M+      DI+ +  LI+  
Sbjct: 566 DYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 625

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G +++   L   +    ++ D+  +TS ++ +S+     +  + F EMI+ G  P+ 
Sbjct: 626 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEE 685

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL-YGEKGV 260
                L+       Q+++   L   M + M  +      L Y E+GV
Sbjct: 686 VLCICLLREYYKRGQLDEAIELKNEMER-MAYSFEFDAQLAYNEQGV 731



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 81/199 (40%), Gaps = 5/199 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  + ++M    I P +  +  ++  +     + + + ++ +M   G+  +  +  +++
Sbjct: 458 DAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTII 517

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y + G+          M+     A I TY +LI+     G +E     F  + +  L+
Sbjct: 518 DAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQ 577

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V  +TS +             ++F+EM   G  PD      LI        +++   L
Sbjct: 578 PNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVL 637

Query: 237 VRTMHKDMKTALPIYFNLY 255
           +  M     T L I F+L+
Sbjct: 638 ISRM-----TELAIEFDLH 651



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 6/188 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF  M + GI+P  + +  L+  Y K   +     ++ QM +  +KPD  +  S+ 
Sbjct: 423 EAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSI- 481

Query: 117 NLYGRLGQFEKMEE---VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++G   Q  K+EE   +L  M+    +A+      +I+ Y + G        FQ +   
Sbjct: 482 -IWGHCSQ-RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDV 539

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++  +VT+   +       +    ++ F  M+  G  P+      LI      + IE  
Sbjct: 540 GVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESA 599

Query: 234 TTLVRTMH 241
             L   M 
Sbjct: 600 KKLFDEMQ 607



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 88/201 (43%), Gaps = 1/201 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +  +M + G+   + ++  LL    K G + + E V   M K G+ P+  V  +
Sbjct: 386 LTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTA 445

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y +  + E   ++L  M + +   D+  Y  +I  +     +E+ + + + + ++ 
Sbjct: 446 LVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 505

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE-QV 233
           +  + V  T+ + AY +       L  F+EM D G      T  VLI        +E  V
Sbjct: 506 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAV 565

Query: 234 TTLVRTMHKDMKTALPIYFNL 254
               R +   ++  + +Y +L
Sbjct: 566 DYFCRMLSLGLQPNVAVYTSL 586


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 93/184 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F +M    I P + +  +L+  + K GN+ + + V+  M K  +KPD    +S++
Sbjct: 386 DAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLM 445

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y  + +  K E +   M      A++ +YNI+IN + +   +++   LF+ +  K++ 
Sbjct: 446 DGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIF 505

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV+T++S +    +       LE+ +EM   G  PD  T   ++ A   +  +++  TL
Sbjct: 506 PDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITL 565

Query: 237 VRTM 240
           +  +
Sbjct: 566 LTKL 569



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 91/185 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+EM    I P + ++  L+    K+G ++    ++++MH  G +PD    NS+
Sbjct: 490 DEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSI 549

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +    +K   +LT ++      D++TY IL+    + G +E    +F+ L  K  
Sbjct: 550 LDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGY 609

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             DV  +T  +  +  K L+   L +  +M + GC PD  T +++I +   +D+ +    
Sbjct: 610 NLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEK 669

Query: 236 LVRTM 240
           L+R M
Sbjct: 670 LLREM 674



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 87/188 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + +DA  ++ E     I P + ++  L++ +   G +     + N+M    + PD +  +
Sbjct: 348 HVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFS 407

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ + + G  ++ + VL  M K S   D+ TY+ L++ Y     + K E +F ++  +
Sbjct: 408 ILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHR 467

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +  +V ++   +  + + K+    +++F+EM     +PD  T   LI       +I   
Sbjct: 468 GVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYA 527

Query: 234 TTLVRTMH 241
             LV  MH
Sbjct: 528 LELVDEMH 535



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/139 (18%), Positives = 60/139 (43%)

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G   D     +++N   ++G+ +   E+L   +      D+  YN +I+   +   +   
Sbjct: 293 GFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDA 352

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             L+    +KR+ PDV T+ + ++ +      +  +++F +M      PD  T  +L+  
Sbjct: 353 FDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDG 412

Query: 224 CSSEDQIEQVTTLVRTMHK 242
              +  I++   ++  M K
Sbjct: 413 FCKDGNIKEAKNVLAMMMK 431



 Score = 37.0 bits (84), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 30/172 (17%), Positives = 69/172 (40%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           S+  L+    K G       ++ +     ++PD  + N++++   +        ++ +  
Sbjct: 300 SYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEK 359

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
                  D+ TYN LI+ +   G ++    LF  + +K + PDV T++  +  + +    
Sbjct: 360 VSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNI 419

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247
           +    +   M+     PD  T   L+      +++ +  ++  TM     TA
Sbjct: 420 KEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTA 471


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 86/174 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   FE+MK+ GI P++ +    L + ++ G + + + + N +H  GL PD+   N M+ 
Sbjct: 456 ALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMK 515

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + GQ +K  ++LT M       DI   N LI+   + G +++   +F  L   +L P
Sbjct: 516 CYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAP 575

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            VVT+   +    ++    + L++F  M ++GC P+  T   L+      D ++
Sbjct: 576 TVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVD 629



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +F+ M + GI P +KS+ +L+     TG V        ++  +GL PDT   N M+N
Sbjct: 947  ACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMIN 1006

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              G+  + E+   + + M+    + ++ TYN LI  +G  G +++   +F+ L    L+P
Sbjct: 1007 GLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEP 1066

Query: 178  DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            +V T+ + +  +S+     R   +F++M+  GC P+ GT   L + C
Sbjct: 1067 NVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQLPNKC 1113



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 87/188 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  V++ M   G+ P+MK++  L+ A  +  +      ++ +M   GL+P+ +   
Sbjct: 207 FCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYT 266

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
             + + GR G+ +    +L  ME      D+ TY +LI+     G ++K + L+  + A 
Sbjct: 267 ICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRAS 326

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KPD+VT+ + ++ +            + EM   G  PD  T  +L+ A     +++Q 
Sbjct: 327 SHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQA 386

Query: 234 TTLVRTMH 241
             ++  M 
Sbjct: 387 FDMLDVMR 394



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F ++   G++P   ++ +++  YSK G + K   ++ +M   G +PD  V+NS++
Sbjct: 490 EAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLI 549

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+ ++  ++   ++    A  + TYNILI   G+ G + K   LF S+      
Sbjct: 550 DTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCP 609

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           P+ VT+ + L    +       L++F  M    C PD  T   +I
Sbjct: 610 PNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTII 654



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 84/181 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM+ LG+ P + ++ + +    + G +    G++  M   G  PD      +++   
Sbjct: 249 LLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALC 308

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+ +K +E+ T M   S+  D+ TY  L++ +G  G +E ++  +  + A    PDVV
Sbjct: 309 AAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVV 368

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T  + A  +     +  ++ + M   G  P+  T   LIS   +  ++++   L   M
Sbjct: 369 TYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNM 428

Query: 241 H 241
            
Sbjct: 429 E 429



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 7/176 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN++ +   I          DA+ + + M+  G  P + ++ +L+ A    G + K + +
Sbjct: 260 PNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKEL 319

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M  S  KPD     ++++ +G  G  E ++   + ME   YA D+ TY IL+    +
Sbjct: 320 YTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCK 379

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            G +++   +   +  + + P++ T+ + ++     +     LE+F  M   G  P
Sbjct: 380 SGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAP 435



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 7/207 (3%)

Query: 41  QHTPNLFVFIFSIY----FSDAHAV---FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
            H P+L  +I  +     + D   V   + EM+  G  P + ++ +L+ A  K+G V + 
Sbjct: 327 SHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQA 386

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             +++ M   G+ P+    N++++    L + ++  E+   ME    A    +Y + I+ 
Sbjct: 387 FDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDY 446

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+ G  EK    F+ +  + + P +    + L + +     R   +IF ++ + G  PD
Sbjct: 447 YGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPD 506

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTM 240
             T  +++   S   QI++ T L+  M
Sbjct: 507 SVTYNMMMKCYSKAGQIDKATKLLTEM 533



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 1/190 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + M+  GI P + ++  L++       + +   + N M   G+ P  +     ++
Sbjct: 386 AFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFID 445

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG+LG  EK  +    M+K      I+  N  +      G I + + +F  +    L P
Sbjct: 446 YYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSP 505

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+   +  YS+     +  ++  EM+  GC PD      LI       ++++   + 
Sbjct: 506 DSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMF 565

Query: 238 RTMHKDMKTA 247
             + KD+K A
Sbjct: 566 GRL-KDLKLA 574



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 80/184 (43%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +A  +FEEM      P    + +L+  + K GNV     +  +M K G++PD      ++
Sbjct: 911  EAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILV 970

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                  G+ +        ++      D  +YN++IN  G+   +E+   LF  +  + + 
Sbjct: 971  ECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGIS 1030

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            P++ T+ + +  +    +  +  ++FEE+   G  P+  T   LI   S     ++  ++
Sbjct: 1031 PELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSV 1090

Query: 237  VRTM 240
             + M
Sbjct: 1091 FKKM 1094



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 5/217 (2%)

Query: 32  FMLINFLLLQHTPNLFVFIF---SIYFSDAHAVFE--EMKRLGITPTMKSHMLLLTAYSK 86
           F L+   ++   PN ++ IF   SI      A F   +M++ G      S+  L+    +
Sbjct: 145 FDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQ 204

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
            G   +   V  +M   GLKP     ++++   GR      + ++L  ME      +I T
Sbjct: 205 PGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYT 264

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           Y I I + GR G I+   G+ +++  +   PDVVT+T  + A        +  E++ +M 
Sbjct: 265 YTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMR 324

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +   PD  T   L+S   +   +E V      M  D
Sbjct: 325 ASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEAD 361



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 1/188 (0%)

Query: 57  DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           DA  +F++  K LG  PT +S+  L+              +  +M  +G  P+ F  N +
Sbjct: 770 DAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLL 829

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ +G+  + +++ E+   M       +I T+NI+I+   +   I K   L+  + +   
Sbjct: 830 LDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDF 889

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P   T+   +    +       ++IFEEM D  C P+     +LI+       +     
Sbjct: 890 SPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACD 949

Query: 236 LVRTMHKD 243
           L + M K+
Sbjct: 950 LFKRMIKE 957



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 74/164 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EMK  G  P + ++ LLL A+ K+  + +   + N+M   G KP+    N +++
Sbjct: 807 ALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIIS 866

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +     K  ++   +  G ++    TY  LI    + G  E+   +F+ +P  + KP
Sbjct: 867 ALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKP 926

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +   +  + +        ++F+ MI  G  PD  +  +L+
Sbjct: 927 NCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILV 970



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/203 (19%), Positives = 81/203 (39%)

Query: 39   LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
            ++ H   +   + S   + A  ++ E+     +PT  ++  L+    K G   +   +  
Sbjct: 858  IITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFE 917

Query: 99   QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +M     KP+  + N ++N +G+ G      ++   M K     D+ +Y IL+      G
Sbjct: 918  EMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTG 977

Query: 159  FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             ++     F+ L    L PD V++   +    + +     L +F EM + G  P+  T  
Sbjct: 978  RVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYN 1037

Query: 219  VLISACSSEDQIEQVTTLVRTMH 241
             LI    +   ++Q   +   + 
Sbjct: 1038 ALILHFGNAGMVDQAGKMFEELQ 1060



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 6/218 (2%)

Query: 30  SHFMLINFLL-LQHTPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTA 83
           S+F +++ L  + HTP    ++           D   VF+ M++  I     +++ +  A
Sbjct: 107 SYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKA 166

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
            S  G + +    + +M ++G   + +  N ++    + G  ++  +V   M        
Sbjct: 167 LSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPS 226

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TY+ L+   GR      +  L + +    L+P++ T+T  +    R         I +
Sbjct: 227 MKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILK 286

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            M D GC PD  T  VLI A  +  ++++   L   M 
Sbjct: 287 TMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMR 324



 Score = 40.4 bits (93), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              +A ++F EMK  GI+P + ++  L+  +   G V +   +  ++   GL+P+ F  N+
Sbjct: 1014 LEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNA 1073

Query: 115  MLNLYGRLGQ-------FEKMEEVLTAMEKGSYA 141
            ++  + + G        F+KM  V  +   G++A
Sbjct: 1074 LIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFA 1107


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 85/185 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A FE++K  G  P + ++  LL  + K GN  +   V+ +M ++G +PD    N + 
Sbjct: 263 EAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELA 322

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y R G FE+    L  M       +  TYN ++  YG  G +++   LF  +      
Sbjct: 323 GTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFV 382

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V T+   L    +K  +   LE+  EM  +GC P+  T   +++ C      + VT +
Sbjct: 383 PNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRV 442

Query: 237 VRTMH 241
           +  M 
Sbjct: 443 LEGMR 447



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 37/223 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--------- 105
           +S A ++  +M+  G  P  +S+ LLL  Y+K GNVA    + N+++ SG          
Sbjct: 506 WSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILR 565

Query: 106 ---------------------------KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
                                       PD  + NSML++Y + G + K  EV  ++++ 
Sbjct: 566 TLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRS 625

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLP-AKRLKPDVVTWTSRLAAYSRKKLYRR 197
             + D+ TYN L+++Y +     + E +   L  ++ +KPDVV++ + +  + ++ L + 
Sbjct: 626 GLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKE 685

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              +  EM+  G  P   T   L+   SS +   +   ++  M
Sbjct: 686 AQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYM 728



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 99/235 (42%), Gaps = 36/235 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVI- 112
           +  A  +F E++R G+ PT+ ++ ++L  Y + G +  +   ++++M  +G++PD F   
Sbjct: 190 YERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTAS 249

Query: 113 ----------------------------------NSMLNLYGRLGQFEKMEEVLTAMEKG 138
                                             N++L ++G+ G + +   VL  ME+ 
Sbjct: 250 TVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQN 309

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               D  TYN L   Y R GF E+      ++ +K L P+  T+ + + AY         
Sbjct: 310 GCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEA 369

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           L +F++M   G  P+  T  +++     + +   +  ++  M +   T   + +N
Sbjct: 370 LALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWN 424



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 79/155 (50%), Gaps = 1/155 (0%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
              F+E+K  G  P +     +L+ Y+K G  +K   V + + +SGL PD    NS++++
Sbjct: 581 ETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDM 640

Query: 119 YGRLGQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           Y +  +  + E++L  ++   +   D+ +YN +IN + + G +++ + +   + A  + P
Sbjct: 641 YAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAP 700

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
             VT+ + +  YS  +++    E+   M+  G  P
Sbjct: 701 CAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKP 735



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 82/178 (46%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A  V  EM++ G  P   ++  L   Y++ G   +    ++ M   GL
Sbjct: 287 LQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGL 346

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+ F  N+++  YG +G+ ++   +   M+K  +  +++TYN+++ + G+      M  
Sbjct: 347 LPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLE 406

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +   +      P+ VTW + LA   ++ +      + E M   G      T   LI+A
Sbjct: 407 MLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAA 464



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 86/188 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F +A    + M   G+ P   ++  ++TAY   G V +   + +QM K+G  P+    N
Sbjct: 330 FFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYN 389

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L + G+  +F  M E+L  M +     +  T+N ++ + G+ G  + +  + + + + 
Sbjct: 390 LVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSC 449

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++    T+ + +AAY R        +++ EM  AG  P   T   L++  S +      
Sbjct: 450 GVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTA 509

Query: 234 TTLVRTMH 241
            ++V  M 
Sbjct: 510 QSIVSKMR 517



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 4/195 (2%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L A S+ G   +   +  ++ + G+ P     N +L++YGR+G+ + ++  +L
Sbjct: 174 VRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALL 233

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I    R G +++    F+ L A+   P VVT+ + L  + + 
Sbjct: 234 DEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKA 293

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
             Y   L +  EM   GC PD  T   L    +     E+    + TM    K  LP  F
Sbjct: 294 GNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMAS--KGLLPNAF 351

Query: 253 NLYGEKGVARSNLGQ 267
             Y     A  N+G+
Sbjct: 352 T-YNTVMTAYGNVGK 365



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 7/185 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +  + + Y       +A A+F++MK+ G  P + ++ L+L    K         +
Sbjct: 348 PNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEM 407

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M +SG  P+    N+ML + G+ G  + +  VL  M          TYN LI  YGR
Sbjct: 408 LGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGR 467

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       ++  + +    P + T+ + L   SR+  +     I  +M   G  P+  +
Sbjct: 468 CGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQS 527

Query: 217 AKVLI 221
             +L+
Sbjct: 528 YSLLL 532



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + P+L +F  + SIY     +S A  VF+ +KR G++P + ++  L+  Y+K     + E
Sbjct: 592 YNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAE 651

Query: 95  GVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
            ++NQ+  S  +KPD    N+++N + + G  ++ + VL+ M     A    TY+ L+  
Sbjct: 652 KILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGG 711

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           Y       +   +   +    LKP  +T+   + +Y R K +        E+
Sbjct: 712 YSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEV 763


>gi|302823876|ref|XP_002993586.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
 gi|300138598|gb|EFJ05361.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
          Length = 451

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 8/207 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ + F  I   Y     + D     +EM   G+ P + +  +L+ AY + G+  K E  
Sbjct: 205 PDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERT 264

Query: 97  INQM-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
              + + SG KP     NSML  YG+  +  KME+VL  M+      D++T+N L++ YG
Sbjct: 265 YKSLVNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYG 324

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R G ++ M   F  +    +KP V T    L AY+   L      +F         P   
Sbjct: 325 RAGELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVS 384

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           +  +L  A   E Q++++T L+  M +
Sbjct: 385 SYLILFKAYGEERQLDKMTVLMSKMEQ 411



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 6/195 (3%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGV-INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           P++ ++ +L  A ++ G   K E + +  + +  LKPD +  N +++ Y + G +  ME 
Sbjct: 169 PSLATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAYTFNGIMDAYAKKGLYRDMEY 228

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL-PAKRLKPDVVTWTSRLAAY 189
            L  M +     D+ T+N+LI+ YGR G   KME  ++SL      KP   T+ S LA+Y
Sbjct: 229 KLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASY 288

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV----TTLVRTMHKDMK 245
            + +   +  ++   M  AG  PD  T   L+S+     +++ +      +VR+  K   
Sbjct: 289 GQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQV 348

Query: 246 TALPIYFNLYGEKGV 260
           + L +    Y E G+
Sbjct: 349 STLDVLLRAYAEHGL 363



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 58  AHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A A+F E+ +R  + P   +   ++ AY+K G     E  + +M + G++PD    N ++
Sbjct: 190 AEALFLELLRREDLKPDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLI 249

Query: 117 NLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + YGR G F KME    ++   S      +T+N ++  YG+   + KME +   +    L
Sbjct: 250 DAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGL 309

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+ T+ + +++Y R        + F++M+ +   P   T  VL+ A +    +++   
Sbjct: 310 GPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEA 369

Query: 236 LVRTMHK-DMKTALPIY---FNLYGEK 258
           L     K D+K A+  Y   F  YGE+
Sbjct: 370 LFINASKLDIKPAVSSYLILFKAYGEE 396



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 69/142 (48%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P+  +   +L +Y ++  + K E V+ +M  +GL PD    N++++ YGR G+ + M
Sbjct: 273 GCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTM 332

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            +    M +      +ST ++L+  Y   G +++ E LF +     +KP V ++     A
Sbjct: 333 RKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKA 392

Query: 189 YSRKKLYRRCLEIFEEMIDAGC 210
           Y  ++   +   +  +M  +G 
Sbjct: 393 YGEERQLDKMTVLMSKMEQSGV 414


>gi|302822123|ref|XP_002992721.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
 gi|300139462|gb|EFJ06202.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
          Length = 449

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 8/207 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ + F  I   Y     + D     +EM   G+ P + +  +L+ AY + G+  K E  
Sbjct: 203 PDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERT 262

Query: 97  INQM-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
              + + SG KP     NSML  YG+  +  KME+VL  M+      D++T+N L++ YG
Sbjct: 263 YKSLVNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYG 322

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R G ++ M   F  +    +KP V T    L AY+   L      +F         P   
Sbjct: 323 RAGELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVS 382

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           +  +L  A   E Q++++T L+  M +
Sbjct: 383 SYLILFKAYGEERQLDKMTVLMSKMEQ 409



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 6/195 (3%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGV-INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           P++ ++ +L  A ++ G   K E + +  + +  LKPD +  N +++ Y + G +  ME 
Sbjct: 167 PSLATYNMLTRACAQAGLTDKAEALFLELLRRDDLKPDAYTFNGIMDAYAKKGLYRDMEY 226

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL-PAKRLKPDVVTWTSRLAAY 189
            L  M +     D+ T+N+LI+ YGR G   KME  ++SL      KP   T+ S LA+Y
Sbjct: 227 KLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASY 286

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV----TTLVRTMHKDMK 245
            + +   +  ++   M  AG  PD  T   L+S+     +++ +      +VR+  K   
Sbjct: 287 GQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQV 346

Query: 246 TALPIYFNLYGEKGV 260
           + L +    Y E G+
Sbjct: 347 STLDVLLRAYAEHGL 361



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 58  AHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A A+F E+ +R  + P   +   ++ AY+K G     E  + +M + G++PD    N ++
Sbjct: 188 AEALFLELLRRDDLKPDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLI 247

Query: 117 NLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + YGR G F KME    ++   S      +T+N ++  YG+   + KME +   +    L
Sbjct: 248 DAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGL 307

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+ T+ + +++Y R        + F++M+ +   P   T  VL+ A +    +++   
Sbjct: 308 GPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEA 367

Query: 236 LVRTMHK-DMKTALPIY---FNLYGEK 258
           L     K D+K A+  Y   F  YGE+
Sbjct: 368 LFINASKLDIKPAVSSYLILFKAYGEE 394



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 69/142 (48%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P+  +   +L +Y ++  + K E V+ +M  +GL PD    N++++ YGR G+ + M
Sbjct: 271 GCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTM 330

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            +    M +      +ST ++L+  Y   G +++ E LF +     +KP V ++     A
Sbjct: 331 RKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKA 390

Query: 189 YSRKKLYRRCLEIFEEMIDAGC 210
           Y  ++   +   +  +M  +G 
Sbjct: 391 YGEERQLDKMTVLMSKMEQSGV 412


>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + ++ +LL A++++G V +   +   +  S + PD +  N +++ YG+ G  ++ME V
Sbjct: 206 PNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAV 265

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           LT M       DI T+N+LI+ YG+    EKME  F+SL   + KP + T+ S +  Y +
Sbjct: 266 LTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGK 325

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            ++  +   +F++M D    P   T + +I
Sbjct: 326 ARMIDKAEWVFKKMNDMNYIPSFITYECMI 355



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 35/233 (15%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L  F  S      +A+F+++    ++P + +   ++ AY K G + + E V+ +M  +  
Sbjct: 215 LRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNEC 274

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KPD    N +++ YG+  +FEKME+   ++ +      + T+N +I  YG+   I+K E 
Sbjct: 275 KPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEW 334

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE---------------MIDAGC 210
           +F+ +      P  +T+   +  Y       R  EIFEE               M++  C
Sbjct: 335 VFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYC 394

Query: 211 --------------------YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
                               +PD  T K L  A +  D  EQV  L++ M KD
Sbjct: 395 RNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKD 447



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 92/189 (48%), Gaps = 5/189 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC----EGVINQMHK-SGLKPDTFVI 112
           A  +F EMK  G  P    +  L+TA+  T + AK      G +++M      +P+    
Sbjct: 152 AMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTY 211

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +L  + + G+ +++  +   ++    + D+ T+N +++ YG+ G I++ME +   + +
Sbjct: 212 NILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRS 271

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
              KPD++T+   + +Y +K+ + +  + F+ ++ +   P   T   +I        I++
Sbjct: 272 NECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDK 331

Query: 233 VTTLVRTMH 241
              + + M+
Sbjct: 332 AEWVFKKMN 340



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY----GRLGQFEKMEEVLTAM 135
           L++   K G       + ++M  SG +PD  V N+++  +     +    EK+   L  M
Sbjct: 139 LISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKM 198

Query: 136 EKG--SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            KG      ++ TYNIL+  + + G ++++  LF+ L    + PDV T+   + AY +  
Sbjct: 199 -KGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNG 257

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT-MHKDMKTALPIYF 252
           + +    +   M    C PD  T  VLI +   + + E++    ++ M    K  LP + 
Sbjct: 258 MIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFN 317

Query: 253 NLYGEKGVAR 262
           ++    G AR
Sbjct: 318 SMIINYGKAR 327



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 66/159 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F      F+ + R    PT+ +   ++  Y K   + K E V  +M+     P       
Sbjct: 294 FEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYEC 353

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+ +YG  G   +  E+   + +       ST N ++ +Y R G   + + LF +  A R
Sbjct: 354 MIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFR 413

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + PD  T+     AY++  +  +   + ++M   G  P+
Sbjct: 414 VHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPN 452


>gi|413934890|gb|AFW69441.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
          Length = 504

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 100/200 (50%), Gaps = 4/200 (2%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +M   G+    +++ LLL AY++ G +     V+ +M + G++ DT   + ++ LY   G
Sbjct: 148 QMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNG 207

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            ++K  +++  M++     D+  Y+ LI+ +G+ G +     +F  + A+ ++PD+ TW 
Sbjct: 208 MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWN 267

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-- 241
           + +  + R    +R L  F  M + G YPD     ++IS    + + +++  L   M+  
Sbjct: 268 ALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNR 327

Query: 242 --KDMKTALPIYFNLYGEKG 259
             K+      I  ++YG+ G
Sbjct: 328 GFKESGAVYAILVDIYGQYG 347



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +FV I S       + +   +F+ M   G   +   + +L+  Y + G+    +  I 
Sbjct: 298 PKIFVMIISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCIA 357

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            +    + L P  F +  + N Y + G  E+   VL  ME+  +  ++   N LIN +G 
Sbjct: 358 ALRAENTQLLPRVFCV--IANAYAQQGLCEQTVNVLQLMEEEGFEPNLVMLNSLINAFGT 415

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +   +FQ +    + PDVVT+T+ +  + R K + +  E++ EM  AGC PD   
Sbjct: 416 AGRHLEALAVFQHIKDSGMSPDVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCAPDRKA 475

Query: 217 AKVLISA 223
            ++L  A
Sbjct: 476 REMLHDA 482



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 86/210 (40%), Gaps = 4/210 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D+  V  EM+R GI      + +L+  Y   G   K   ++ +M + G++ D  + + 
Sbjct: 174 LEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNGMWKKATDLVMEMQEVGVELDVKIYSG 233

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ GQ      +   M       DIST+N LI  + R G +++    F S+  + 
Sbjct: 234 LIDTFGKYGQLADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEG 293

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD   +   ++    +  +    ++F+ M + G    G    +L+             
Sbjct: 294 MYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQ 353

Query: 235 TLVRTMHKDMKTALPIYF----NLYGEKGV 260
             +  +  +    LP  F    N Y ++G+
Sbjct: 354 DCIAALRAENTQLLPRVFCVIANAYAQQGL 383


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A FE++K  G TP + ++  LL  + K GN  +   V+ +M + G +PD    N + 
Sbjct: 262 EAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELA 321

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y R G +E+  + L  M       +  TYN ++  YG  G +++   LF  +      
Sbjct: 322 GTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCV 381

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V T+   L    +K  +   LE+  EM  +GC P+  T   +++ C      + VT +
Sbjct: 382 PNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRV 441

Query: 237 VRTM 240
           +  M
Sbjct: 442 LEGM 445



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 35/221 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA----------------------- 91
           +S A ++  +M+  G  P  +S+ LLL  Y+K GN+A                       
Sbjct: 505 WSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRT 564

Query: 92  ------KC------EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                 KC      E    ++   G  PD  + NSML++Y + G + K+ E+  ++++  
Sbjct: 565 LVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSG 624

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + D+ TYN L+++Y +     + E +   L + ++KPDVV++ + +  + ++ L +   
Sbjct: 625 LSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQ 684

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            I  EMI  G  P   T   L+   +S +   +   ++  M
Sbjct: 685 RILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYM 725



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 36/198 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVI- 112
           +  A  +F E++R G+ PT+ ++ ++L  Y + G +  +   ++++M  +G++PD F   
Sbjct: 189 YERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTAS 248

Query: 113 ----------------------------------NSMLNLYGRLGQFEKMEEVLTAMEKG 138
                                             N++L ++G+ G + +   VL  ME+ 
Sbjct: 249 TVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQD 308

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               D  TYN L   Y R GF E+      ++ +K L P+  T+ + + AY         
Sbjct: 309 GCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEA 368

Query: 199 LEIFEEMIDAGCYPDGGT 216
           L +F++M  +GC P+  T
Sbjct: 369 LALFDQMKKSGCVPNVNT 386



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 88/177 (49%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F+E+K  G  P +     +L+ Y+K G  +K   + + + +SGL PD    NS++++Y 
Sbjct: 581 AFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYA 640

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  +  + E++L  ++      D+ +YN +IN + + G I++ + +   + A  + P VV
Sbjct: 641 KCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVV 700

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           T+ + +  Y+  +++    E+   MI     P   T + ++ +     + E+  + +
Sbjct: 701 TYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFL 757



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 4/195 (2%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L A S+ G   +   +  ++ + G+ P     N +L++YGR+G+ + ++  +L
Sbjct: 173 VRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALL 232

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I    R G +++    F+ L A+   P VVT+ + L  + + 
Sbjct: 233 DEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKA 292

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
             Y   L + +EM   GC PD  T   L    +     E+    + TM    K  LP  F
Sbjct: 293 GNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTS--KGLLPNAF 350

Query: 253 NLYGEKGVARSNLGQ 267
             Y     A  N+G+
Sbjct: 351 T-YNTVMTAYGNIGK 364



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 86/188 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++ +A    + M   G+ P   ++  ++TAY   G V +   + +QM KSG  P+    N
Sbjct: 329 FYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYN 388

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L + G+  +F  M E+L  M +     +  T+N ++ + G+ G  + +  + + + + 
Sbjct: 389 FILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSC 448

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++    T+ + +AAY R        +++ EM  AG  P   T   L++  S +      
Sbjct: 449 GVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTA 508

Query: 234 TTLVRTMH 241
            ++V  M 
Sbjct: 509 QSIVSKMR 516



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 81/178 (45%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A  V +EM++ G  P   ++  L   Y++ G   +    ++ M   GL
Sbjct: 286 LQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGL 345

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+ F  N+++  YG +G+ ++   +   M+K     +++TYN ++ + G+      M  
Sbjct: 346 LPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLE 405

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +   +      P+ VTW + LA   ++ +      + E M   G      T   LI+A
Sbjct: 406 MLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAA 463



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 7/205 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +  + + Y       +A A+F++MK+ G  P + ++  +L    K         +
Sbjct: 347 PNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEM 406

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M +SG  P+    N+ML + G+ G  + +  VL  M+         TYN LI  YGR
Sbjct: 407 LGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGR 466

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       ++  + +    P + T+ + L   SR+  +     I  +M   G  P+  +
Sbjct: 467 CGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQS 526

Query: 217 AKVLISACSSEDQIEQVTTLVRTMH 241
             +L+   +    I  +  + + ++
Sbjct: 527 YSLLLQCYAKGGNIAGIDAIEKEVY 551



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + P+L +F  + S+Y     +S    +F+ +K+ G++P + ++  L+  Y+K     + E
Sbjct: 590 YNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAE 649

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++NQ+  S +KPD    N+++N + + G  ++ + +L+ M     A  + TY+ L+  Y
Sbjct: 650 KILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGY 709

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
                  +   +   +    LKP  +T+   + +Y + K +        E+
Sbjct: 710 ASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEV 760


>gi|297802950|ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315195|gb|EFH45618.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 906

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 8/194 (4%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN   F  +  +Y     F   + +F   KR G+   + S+  ++ AY K  +      
Sbjct: 698 TPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVI-SYNTIIAAYGKNKDFTNMSS 756

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            I  M   G        N++L+ YG+  Q EK   +L  M+K +   D  TYNI+INIYG
Sbjct: 757 AIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYG 816

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             G+I+++ G+ + L    L PD+ ++ + + AY    +    + + +EM      PD  
Sbjct: 817 EQGWIDEVAGVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGKNITPDKV 876

Query: 216 TAKVLISACSSEDQ 229
           T   L++A    D+
Sbjct: 877 TYTNLVTALRKNDE 890



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 8/211 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+ M  LG+ P + +  +L+  Y K  NV + E   + M K  +  ++   +SM+ 
Sbjct: 231 ASKWFQMMLELGVRPNVATIGMLMGLYQKNWNVDEAEFAFSHMRKFEIVCES-AYSSMIT 289

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y RL  +EK EEV+  M++      +  + +++N Y + G +E+ E +  S+ A    P
Sbjct: 290 IYTRLRLYEKAEEVINLMKQDRVRLKLENWLVMLNAYSQQGKMEQAESVLISMEAAGFAP 349

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT--- 234
           +++ + + +  Y +         +F  + D G  PD  + + +I      D  E+     
Sbjct: 350 NIIAYNTLITGYGKVSKMEAAKSLFHRLSDIGLEPDETSYRSMIEGWGRADNYEEANHYY 409

Query: 235 -TLVRTMHKDMKTALPIYFNL---YGEKGVA 261
             L R  +K   + L    NL   YG++  A
Sbjct: 410 QELKRCGYKPNSSNLFTLINLQAKYGDRDGA 440



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG--LKPDTFVIN 113
            +A   F  M++  I     ++  ++T Y++     K E VIN M +    LK + +++ 
Sbjct: 264 DEAEFAFSHMRKFEIVCE-SAYSSMITIYTRLRLYEKAEEVINLMKQDRVRLKLENWLV- 321

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            MLN Y + G+ E+ E VL +ME   +A +I  YN LI  YG+   +E  + LF  L   
Sbjct: 322 -MLNAYSQQGKMEQAESVLISMEAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFHRLSDI 380

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            L+PD  ++ S +  + R   Y      ++E+   G  P+      LI+
Sbjct: 381 GLEPDETSYRSMIEGWGRADNYEEANHYYQELKRCGYKPNSSNLFTLIN 429



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 2/194 (1%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           FEEM R G TP   +  +LL  Y K     K   +     + G+  D    N+++  YG+
Sbjct: 689 FEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGV-VDVISYNTIIAAYGK 747

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
              F  M   +  M+   ++  +  YN L++ YG+   +EK   + + +      PD  T
Sbjct: 748 NKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYT 807

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   +  Y  +        + +E+ ++G  PD  +   LI A      +E+   LV+ M 
Sbjct: 808 YNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMR 867

Query: 242 -KDMKTALPIYFNL 254
            K++      Y NL
Sbjct: 868 GKNITPDKVTYTNL 881



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 72/159 (45%), Gaps = 1/159 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V   MK+  +   +++ +++L AYS+ G + + E V+  M  +G  P+    N+
Sbjct: 297 YEKAEEVINLMKQDRVRLKLENWLVMLNAYSQQGKMEQAESVLISMEAAGFAPNIIAYNT 356

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  YG++ + E  + +   +       D ++Y  +I  +GR    E+    +Q L    
Sbjct: 357 LITGYGKVSKMEAAKSLFHRLSDIGLEPDETSYRSMIEGWGRADNYEEANHYYQELKRCG 416

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-YP 212
            KP+     + +   ++       ++  E+M   GC YP
Sbjct: 417 YKPNSSNLFTLINLQAKYGDRDGAIKTIEDMTSIGCQYP 455



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/261 (19%), Positives = 110/261 (42%), Gaps = 45/261 (17%)

Query: 42  HTPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H  +  + I+++   F +A  ++  +K  G+        +++  Y K G++ +   V+  
Sbjct: 561 HITSTMIDIYTVMGEFGEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEI 620

Query: 100 M-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           M  +  + PD ++   ML +Y +    +K++ +   ++K     D   YN +IN   R  
Sbjct: 621 MDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIQKSGIHWDQEMYNCVINCCARAL 680

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF-----EEMIDAGCYP- 212
            ++++   F+ +      P+ VT+   L  Y + KL+++  E+F       ++D   Y  
Sbjct: 681 PLDELSRTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNT 740

Query: 213 -----------------------DGGTAKV-----LISACSSEDQIEQVTTLVRTMHKDM 244
                                  DG +  +     L+ A   + Q+E+  ++++ M K  
Sbjct: 741 IIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKK-- 798

Query: 245 KTALP------IYFNLYGEKG 259
            T+ P      I  N+YGE+G
Sbjct: 799 STSGPDHYTYNIMINIYGEQG 819


>gi|297792331|ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
 gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
          Length = 723

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H+    +  +S+  +   A+A FEEM   GI P+++++  LL A+ ++G+  K   +   
Sbjct: 486 HSYTALIHAYSVSGWHEKAYASFEEMWMEGIKPSVETYTSLLDAFRRSGDTEKLMEIWKL 545

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  +K      N++L+ + + G + +  +V++   K      + TYN+L+N Y RGG 
Sbjct: 546 MLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFGKMGLQPSVMTYNMLMNAYARGGQ 605

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             K+  L + + A  LKPD +T+++ + A+ R + ++R     + M+ +G  PD
Sbjct: 606 DAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 1/170 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
           + DA  V+E M ++ + P   +  +++T   K G  AK    +  +M   G+K    V  
Sbjct: 289 YDDAWEVYEAMNKINVFPDNVTCAIMITTMRKAGRSAKEVWEIFEKMSDKGVKWSQDVFG 348

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  +   G  E+   + T MEK    ++   YN L++ Y +   IE++EGLF  + AK
Sbjct: 349 GLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFAEIKAK 408

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            LKP   T+   + AY+R+        +  EM D G  P+  +   LISA
Sbjct: 409 GLKPTAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSFTCLISA 458



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 1/198 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  EM++ GI      +  L+ AY+K+ ++ + EG+  ++   GLKP     N ++
Sbjct: 362 EALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFAEIKAKGLKPTAATYNILM 421

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKRL 175
           + Y R  Q + +E +L  ME      ++ ++  LI+ YGR   +  M    F  +    L
Sbjct: 422 DAYARRMQPDIVETLLREMEDLGLEPNVKSFTCLISAYGRTKKMSDMAADAFLRMKKVGL 481

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP   ++T+ + AYS    + +    FEEM   G  P   T   L+ A       E++  
Sbjct: 482 KPSSHSYTALIHAYSVSGWHEKAYASFEEMWMEGIKPSVETYTSLLDAFRRSGDTEKLME 541

Query: 236 LVRTMHKDMKTALPIYFN 253
           + + M ++      I +N
Sbjct: 542 IWKLMLREKIKGTRITYN 559



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 1/156 (0%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S +  +   +F E+K  G+ PT  ++ +L+ AY++       E ++ +M   GL+P+   
Sbjct: 392 SNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKS 451

Query: 112 INSMLNLYGRLGQFEKM-EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
              +++ YGR  +   M  +    M+K        +Y  LI+ Y   G+ EK    F+ +
Sbjct: 452 FTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEM 511

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
             + +KP V T+TS L A+ R     + +EI++ M+
Sbjct: 512 WMEGIKPSVETYTSLLDAFRRSGDTEKLMEIWKLML 547



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 1/183 (0%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLN 117
             +  EM+ LG+ P +KS   L++AY +T  ++        +M K GLKP +    ++++
Sbjct: 434 ETLLREMEDLGLEPNVKSFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIH 493

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  EK       M        + TY  L++ + R G  EK+  +++ +  +++K 
Sbjct: 494 AYSVSGWHEKAYASFEEMWMEGIKPSVETYTSLLDAFRRSGDTEKLMEIWKLMLREKIKG 553

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             +T+ + L  ++++ LY    ++  E    G  P   T  +L++A +   Q  ++  L+
Sbjct: 554 TRITYNTLLDGFAKQGLYIEARDVVSEFGKMGLQPSVMTYNMLMNAYARGGQDAKLPQLL 613

Query: 238 RTM 240
           + M
Sbjct: 614 KEM 616



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 1/166 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FE+M   G+  +      L+ ++   G   +   +  +M K G++ +T V N++++ Y 
Sbjct: 331 IFEKMSDKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYN 390

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +    E++E +   ++        +TYNIL++ Y R    + +E L + +    L+P+V 
Sbjct: 391 KSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVK 450

Query: 181 TWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           ++T  ++AY R KK+     + F  M   G  P   +   LI A S
Sbjct: 451 SFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYS 496


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 89/178 (50%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           E+   G +P   +   L+  + + GNV     +++ M + G  PD +  NS+++   +LG
Sbjct: 253 EVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLG 312

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           +FEK  E+L  M     + +  TYN LI+   +   IE    L + L +K L PDV T+ 
Sbjct: 313 EFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFN 372

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + +      K     +E+FEEM + GC PD  T  +LI +   E ++++   L++ M 
Sbjct: 373 TLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEME 430



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F++M+ LG++ +  ++  L+    K   V +   +++QM   GLKPD F  NS+L
Sbjct: 456 DAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLL 515

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R+G  EK  +++  M       DI TY  LI    R G ++    L +S+  K + 
Sbjct: 516 TYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIV 575

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
                +   + A   +K  +  + +F EM++    PD  T K++
Sbjct: 576 LTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIV 619



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 84/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + EEM   G+ P   +   L+  + + G++     +  QM   G       +  ++N
Sbjct: 177 AILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVN 236

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+ E+    +  + +  ++ D  T+N L+N + R G +     +   +  K   P
Sbjct: 237 GFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDP 296

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV T+ S ++   +   + + +EI ++MI   C P+  T   LISA   E++IE  T L 
Sbjct: 297 DVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLA 356

Query: 238 RTM 240
           R +
Sbjct: 357 RIL 359



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEMK  G  P   ++ +L+ +      + +   ++ +M  SG   +  V N++++
Sbjct: 387 AMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLID 446

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + E  EE+   ME    +    TYN LI+   +   +E+   L   +  + LKP
Sbjct: 447 GLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKP 506

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+ S L  + R     +  +I + M   GC PD  T   LI       +++  + L+
Sbjct: 507 DKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLL 566

Query: 238 RTMH 241
           R++ 
Sbjct: 567 RSVQ 570



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 95/217 (43%), Gaps = 11/217 (5%)

Query: 38  LLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           LLLQ T        S  F     + +++K  G  P   +   L+ +++   N  + E ++
Sbjct: 61  LLLQLTQ-------SSSFDSITTLLKQLKSSGSIPNATTFATLIQSFT---NFHEIENLL 110

Query: 98  NQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +    G KPDT   N  LN      + + +E + + M       D+ST+N+LI    +
Sbjct: 111 KILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCK 170

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +     + + +    LKPD +T+T+ +  +  +      L++ ++M+  GC     +
Sbjct: 171 AHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVS 230

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            KVL++    E ++E+    V  + ++  +   + FN
Sbjct: 231 VKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFN 267


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 94/195 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM+ LG++P   +   +L  + K G +A     I+ M +  ++PD  +   +++ Y 
Sbjct: 321 LMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYR 380

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           RLG+ E    V  AM K   + +++TYN LI  + R G      GL   +  K ++ DVV
Sbjct: 381 RLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVV 440

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A   K   R+ +++ +EM + G  P+  T   +I     +  I+    +   M
Sbjct: 441 TYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500

Query: 241 HKDMKTALPIYFNLY 255
            K  K A  + +N++
Sbjct: 501 EKCRKRANVVTYNVF 515



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 35/217 (16%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM   GI+PT  +  +L+  Y K  N A    V  +M + G+       NS+++   
Sbjct: 251 LLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLC 310

Query: 121 RLGQFEK----MEEV-------------------------------LTAMEKGSYAADIS 145
             G+ E+    MEE+                               +  M + +   D+ 
Sbjct: 311 SEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 370

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            Y ILI+ Y R G +E    + +++  K + P+V T+   +  +SR   +R    + +EM
Sbjct: 371 IYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + G   D  T  VLI A   + ++ +   L+  M +
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSE 467



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 77/162 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA AV E M + GI+P + ++  L+T +S++G+     G++++M + G++ D    N 
Sbjct: 385 MEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G+  K  ++L  M +     +  TYN +I  +   G I+    +   +   R
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            + +VVT+   +  + +        ++  EM+D    P+G T
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 16/165 (9%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S  +  A  + +EMK  GI   + ++ +L+ A    G V K   ++++M + GL+P+
Sbjct: 414 FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPN 473

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N+++  +   G  +   E+ T MEK    A++ TYN+ I  + + G +++   L  
Sbjct: 474 HLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLN 533

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +  K L P+ +T+ +                I E M++ G  PD
Sbjct: 534 EMLDKCLVPNGITYET----------------IKEGMMEKGYTPD 562



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 65/151 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA+   + M    + P +  + +L+  Y + G +     V   M K G+ P+    N 
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNC 409

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R G +     +L  M++    AD+ TYN+LI      G + K   L   +    
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           L+P+ +T+ + +  +  K   +   EI   M
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 3/173 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P+  S   LL        V   E       +  + PD +  N++++   R+GQ  K  +V
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 132 LTAMEKGSYAADISTYNILINIY---GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
              ++    A  ++TYN LI+ Y   G  G +  ++ L + +    + P  VT+   +  
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           Y +       + +FEEM   G      T   LIS   SE ++E+   L+  M 
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEME 326



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 10/210 (4%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK---TGNVAK 92
           +P+++ F   I           A  V +++K  G+ P++ ++  L+  Y K    GN+  
Sbjct: 188 SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYH 247

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            + ++ +M ++G+ P       ++N Y +         V   M++   AA + TYN LI+
Sbjct: 248 VDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLIS 307

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
                G +E+   L + +    L P+ +T+   L  + +K +     +  + M +    P
Sbjct: 308 GLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEP 367

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           D     +LI       ++E    +   M K
Sbjct: 368 DVVIYTILIDGYRRLGKMEDAMAVKEAMAK 397


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 5/202 (2%)

Query: 46  LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           +F  +FS++       +A+  F  M+     P  +S   LL   SK+GN        N M
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 280

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             +G+ P  F  N M++   + G  E    +   M +   + D+ TYN LI+ YG+ G +
Sbjct: 281 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSL 340

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           E++  LF  +      PD++T+   +  Y + +   R  E F EM + G  P+  T   L
Sbjct: 341 EEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTL 400

Query: 221 ISACSSEDQIEQVTTLVRTMHK 242
           I A   E  ++    L   M +
Sbjct: 401 IDAFCKEGMMQGAIKLFVDMRR 422



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 90/179 (50%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M   GI P++ ++ +++    K G++     +  QM + GL PD    NS+++ YG+
Sbjct: 277 FNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGK 336

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G  E++  +   M+      DI TYN LIN Y +   + +    F  +    LKP+VVT
Sbjct: 337 VGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVT 396

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +++ + A+ ++ + +  +++F +M   G  P+  T   LI A      + +   L+  M
Sbjct: 397 YSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM 455



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 88/187 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           ++  +F +M+ +G++P + ++  L+  Y K G++ +   + N+M   G  PD    N ++
Sbjct: 307 NSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLI 366

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y +  +  +  E  + M+      ++ TY+ LI+ + + G ++    LF  +    L 
Sbjct: 367 NCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLL 426

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+TS + A  +        ++  +M+ AG   +  T   L+       ++ +   +
Sbjct: 427 PNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEV 486

Query: 237 VRTMHKD 243
            R+M KD
Sbjct: 487 FRSMLKD 493



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 90/193 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F EMK  G+ P + ++  L+ A+ K G +     +   M ++GL P+ F   S+++
Sbjct: 378 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G   +  ++L  M +     +I TY  L++   + G + + E +F+S+    + P
Sbjct: 438 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 497

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   +T+ +  Y + +     ++I ++M +    PD      +I    S+ ++E+   ++
Sbjct: 498 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLIL 557

Query: 238 RTMHKDMKTALPI 250
             M     +A P+
Sbjct: 558 EEMKSRGISANPV 570



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 79/166 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F +M+R G+ P   ++  L+ A  K GN+ +   ++N M ++G+K +     ++L+
Sbjct: 413 AIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLD 472

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+  + EEV  +M K   + +   Y  L++ Y +   +E    + + +    +KP
Sbjct: 473 GLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKP 532

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D++ + S +  +  ++       I EEM   G   +   +  +I A
Sbjct: 533 DLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDA 578



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 89/196 (45%), Gaps = 1/196 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  ++F EMK +G  P + ++  L+  Y K   + +     ++M  +GLKP+    ++++
Sbjct: 342 EVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLI 401

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G  +   ++   M +     +  TY  LI+   + G + +   L   +    +K
Sbjct: 402 DAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVK 461

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            ++VT+T+ L    +        E+F  M+  G  P+      L+      +++E    +
Sbjct: 462 LNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKI 521

Query: 237 VRTMHK-DMKTALPIY 251
           ++ M + ++K  L +Y
Sbjct: 522 LKQMTECNIKPDLILY 537



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 91/208 (43%), Gaps = 5/208 (2%)

Query: 40  LQHTPNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           +   P +   I   YF     SDA   F+EM+ +G+  T+ ++ +L+    K G V    
Sbjct: 565 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAV 624

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
               +M   GL+P+  V  S+++   +    E  +++   M+      DI+ +  LI+  
Sbjct: 625 DYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 684

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G +++   L   +    ++ D+  +TS ++ +S+     +  + F EMI+ G  P+ 
Sbjct: 685 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEE 744

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHK 242
                L+       Q+++   L   M +
Sbjct: 745 VLCICLLREYYKRGQLDEAIELKNEMER 772



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 83/199 (41%), Gaps = 5/199 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  + ++M    I P +  +  ++  +     + + + ++ +M   G+  +  +  +++
Sbjct: 517 DAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTII 576

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y + G+          M+     A I TY +LI+   + G +E     F  + +  L+
Sbjct: 577 DAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQ 636

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V  +TS +    +        ++F+EM   G  PD      LI        +++   L
Sbjct: 637 PNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVL 696

Query: 237 VRTMHKDMKTALPIYFNLY 255
           +  M     T L I F+L+
Sbjct: 697 ISRM-----TELAIEFDLH 710



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF  M + GI+P  + +  L+  Y K   +     ++ QM +  +KPD  +  S+ 
Sbjct: 482 EAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSI- 540

Query: 117 NLYGRLGQFEKMEE---VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++G   Q  K+EE   +L  M+    +A+      +I+ Y + G        FQ +   
Sbjct: 541 -IWGHCSQ-RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDV 598

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++  +VT+   +    +  +    ++ F  M+  G  P+      LI      + IE  
Sbjct: 599 GVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESA 658

Query: 234 TTLVRTMH 241
             L   M 
Sbjct: 659 KKLFDEMQ 666



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 93/211 (44%), Gaps = 3/211 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +  +M + G+   + ++  LL    K G + + E V   M K G+ P+  V  +
Sbjct: 445 LTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTA 504

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y +  + E   ++L  M + +   D+  Y  +I  +     +E+ + + + + ++ 
Sbjct: 505 LVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 564

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE-QV 233
           +  + V  T+ + AY +       L  F+EM D G      T  VLI        +E  V
Sbjct: 565 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAV 624

Query: 234 TTLVRTMHKDMKTALPIYFNLYGEKGVARSN 264
               R +   ++  + +Y +L    G+ ++N
Sbjct: 625 DYFCRMLSLGLQPNVAVYTSLI--DGLCKNN 653



 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 28/157 (17%), Positives = 66/157 (42%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  M  LG+ P +  +  L+    K   +   + + ++M   G+ PD     ++++   +
Sbjct: 627 FCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLK 686

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++   +++ M + +   D+  Y  L++ + + G + +    F  +  K + P+ V 
Sbjct: 687 HGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVL 746

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
               L  Y ++      +E+  EM   G   +  T +
Sbjct: 747 CICLLREYYKRGQLDEAIELKNEMERMGLITESATMQ 783


>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2453; Flags: Precursor
 gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
 gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
 gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
 gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 563

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + ++ +LL A++++G V +   +   +  S + PD +  N +++ YG+ G  ++ME V
Sbjct: 206 PNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAV 265

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           LT M       DI T+N+LI+ YG+    EKME  F+SL   + KP + T+ S +  Y +
Sbjct: 266 LTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGK 325

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            ++  +   +F++M D    P   T + +I
Sbjct: 326 ARMIDKAEWVFKKMNDMNYIPSFITYECMI 355



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 35/233 (15%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L  F  S      +A+F+++    ++P + +   ++ AY K G + + E V+ +M  +  
Sbjct: 215 LRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNEC 274

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KPD    N +++ YG+  +FEKME+   ++ +      + T+N +I  YG+   I+K E 
Sbjct: 275 KPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEW 334

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE---------------MIDAGC 210
           +F+ +      P  +T+   +  Y       R  EIFEE               M++  C
Sbjct: 335 VFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYC 394

Query: 211 --------------------YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
                               +PD  T K L  A +  D  EQV  L++ M KD
Sbjct: 395 RNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKD 447



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 92/189 (48%), Gaps = 5/189 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC----EGVINQMHK-SGLKPDTFVI 112
           A  +F EMK  G  P    +  L+TA+  T + AK      G +++M      +P+    
Sbjct: 152 AMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTY 211

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +L  + + G+ +++  +   ++    + D+ T+N +++ YG+ G I++ME +   + +
Sbjct: 212 NILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRS 271

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
              KPD++T+   + +Y +K+ + +  + F+ ++ +   P   T   +I        I++
Sbjct: 272 NECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDK 331

Query: 233 VTTLVRTMH 241
              + + M+
Sbjct: 332 AEWVFKKMN 340



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM----LNLYGRLGQFEKMEEVLTAM 135
           L++   K G       + ++M  SG +PD  V N++    L+   +    EK+   L  M
Sbjct: 139 LISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKM 198

Query: 136 EKG--SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            KG      ++ TYNIL+  + + G ++++  LF+ L    + PDV T+   + AY +  
Sbjct: 199 -KGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNG 257

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT-MHKDMKTALPIYF 252
           + +    +   M    C PD  T  VLI +   + + E++    ++ M    K  LP + 
Sbjct: 258 MIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFN 317

Query: 253 NLYGEKGVAR 262
           ++    G AR
Sbjct: 318 SMIINYGKAR 327



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 66/159 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F      F+ + R    PT+ +   ++  Y K   + K E V  +M+     P       
Sbjct: 294 FEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYEC 353

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+ +YG  G   +  E+   + +       ST N ++ +Y R G   + + LF +  A R
Sbjct: 354 MIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFR 413

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + PD  T+     AY++  +  +   + ++M   G  P+
Sbjct: 414 VHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPN 452


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 92/186 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +  EM    I P + ++  +   Y+K G +     + N+M   G+  D    N++L+
Sbjct: 347 AYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLS 406

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y +LG+FE   +V   M       D+ TYN L++ YG+ G   ++  +F+ +   R+ P
Sbjct: 407 IYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFP 466

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+++ +  YS+  LY   +E+F E   AG   D      LI+A      ++    L+
Sbjct: 467 NLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLL 526

Query: 238 RTMHKD 243
             M K+
Sbjct: 527 DEMTKE 532



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  ++ EMK LGI     S+  LL+ Y+K G       V  +M  SG+K D    N+
Sbjct: 379 LEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNA 438

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ YG+ G+F ++  V   M+K     ++ TY+ LI++Y +G   E+   +F+      
Sbjct: 439 LLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAG 498

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LK DVV ++  + A  +  L    + + +EM   G  P+  T   +I A
Sbjct: 499 LKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDA 547



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 7/214 (3%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTF 110
           S YF +A  VFE MK  G+ P + ++  ++ A  K G    +   +  +M ++G++PD  
Sbjct: 235 SGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRI 294

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             NS+L +  R G +E    +   M       D+ TYN L++   +GG ++    +   +
Sbjct: 295 TYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           P K++ P+VVT+++    Y++       L ++ EM   G   D  +   L+S  +   + 
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRF 414

Query: 231 EQVTTLVRTM-----HKDMKTALPIYFNLYGEKG 259
           E    + + M      KD+ T   +  + YG++G
Sbjct: 415 EDALKVCKEMGSSGVKKDVVTYNAL-LDGYGKQG 447



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 88/191 (46%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           + F     +FEEM R G+ P   ++  LL   S+ G       + N+M   G+  D F  
Sbjct: 272 VEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTY 331

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++L+   + GQ +   E++  M       ++ TY+ + + Y + G +E    L+  +  
Sbjct: 332 NTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKF 391

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             +  D V++ + L+ Y++   +   L++ +EM  +G   D  T   L+     + +  +
Sbjct: 392 LGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNE 451

Query: 233 VTTLVRTMHKD 243
           VT + + M KD
Sbjct: 452 VTRVFKEMKKD 462



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 1/153 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++   + G V   +GV       G     F  +++++ YG+ G F++  +V  +M+   
Sbjct: 193 MISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSG 252

Query: 140 YAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
              ++ TYN +I+  G+GG   +++  +F+ +    ++PD +T+ S LA  SR  L+   
Sbjct: 253 LKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAA 312

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             +F EMID G   D  T   L+ A     Q++
Sbjct: 313 RNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMD 345



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 73/130 (56%), Gaps = 3/130 (2%)

Query: 113 NSMLNLYGRLGQFEKMEEVL-TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           ++M++  GRLG+ E  + V  TA+ +G Y   +  ++ LI+ YG+ G+ ++   +F+S+ 
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEG-YGNTVFAFSALISAYGKSGYFDEAIKVFESMK 249

Query: 172 AKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
              LKP++VT+ + + A  +  + ++R +EIFEEM+  G  PD  T   L++ CS     
Sbjct: 250 VSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLW 309

Query: 231 EQVTTLVRTM 240
           E    L   M
Sbjct: 310 EAARNLFNEM 319



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFE     G   T+ +   L++AY K+G   +   V   M  SGLKP+    N++++
Sbjct: 206 AKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVID 265

Query: 118 LYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             G+ G +F+++ E+   M +     D  TYN L+ +  RGG  E    LF  +  + + 
Sbjct: 266 ACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGID 325

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DV T+ + L A  +        EI  EM      P+  T   +    +   ++E    L
Sbjct: 326 QDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNL 385

Query: 237 VRTM 240
              M
Sbjct: 386 YNEM 389



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 50  IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + SIY     F DA  V +EM   G+   + ++  LL  Y K G   +   V  +M K  
Sbjct: 404 LLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDR 463

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           + P+    ++++++Y +   +E+  EV    ++    AD+  Y+ LIN   + G ++   
Sbjct: 464 VFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAV 523

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            L   +  + ++P+VVT+ S + A+ R
Sbjct: 524 LLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 24/210 (11%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL  +  +  +Y     + +A  VF E K+ G+   +  +  L+ A  K G V     +
Sbjct: 466 PNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLL 525

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL-----I 151
           +++M K G++P+    NS+++ +GR    E + + + A  +    ++  T+ ++      
Sbjct: 526 LDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNE--RQSESPTFMLIEGVDES 583

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
            I    G + K    +Q L +++  P       RL     K+  R  L +F++M +    
Sbjct: 584 EINWDDGHVFK---FYQQLVSEKEGP---AKKERLG----KEEIRSILSVFKKMHELEIK 633

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           P+  T   +++ACS    IE  + L+  + 
Sbjct: 634 PNVVTFSAILNACSRCKSIEDASMLLEELR 663


>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 385

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 69/260 (26%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH------------- 101
           +  A  +F+EM   G+ P++ ++ +L+  Y K G   + E V++ M              
Sbjct: 121 YVQARKIFDEMMIEGVKPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNT 180

Query: 102 ----------------------KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                                 + GL+PD   +NS+++ YG  G FEKME V   M++ +
Sbjct: 181 LIRVFGLNCKIPEMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYN 240

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-------K 192
           Y     TYNI++  YGR G +++ME  ++ + A+ +KP+  T+ S L+AY R       +
Sbjct: 241 YPMTRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHGYWHNVE 300

Query: 193 KLYRRCL---------------------------EIFEEMIDAGCYPDGGTAKVLISACS 225
           K+ R+                             +IFEEM   G  PD  T  +LI A  
Sbjct: 301 KVMRQARYFDAADTAVYNAAIDAFQRAQNFEDMEKIFEEMKLKGHAPDDVTYSILIGAYE 360

Query: 226 SEDQIEQVTTLVRTMHKDMK 245
              ++++   L    +  +K
Sbjct: 361 RIRRVDKARDLQEEWNGSVK 380



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 1/156 (0%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           T  L VF  S  F  A  +FE M+   G  P   ++  ++    + G   +   + ++M 
Sbjct: 73  TALLTVFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMM 132

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
             G+KP     N +++ YG+ G F ++E VL+ ME  + A D  T+N LI ++G    I 
Sbjct: 133 IEGVKPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIP 192

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
           +ME  ++ L  + L+PD+VT  S ++AY    L+ +
Sbjct: 193 EMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEK 228



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 40/230 (17%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           T  + +++ LLT  +K    A+   V + + +  L+P T +  ++L ++ +  QF+K  E
Sbjct: 31  TADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTVFTQSNQFKKALE 90

Query: 131 VL----------------TAMEKGSYAA--------------------DISTYNILINIY 154
           +                 TAM KG   A                     I TYNILI+ Y
Sbjct: 91  IFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVKPSIVTYNILIHGY 150

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           G+ G   ++E +  ++ A  + PD VTW + +  +          + +E ++  G  PD 
Sbjct: 151 GKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPEMEQAYEGLLRQGLQPDM 210

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEKGV 260
            T   LISA  +    E++ ++ + M +       I +N+    YG  G+
Sbjct: 211 VTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGM 260



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y AD+STY  L+ +  +     +   +F  L   +L+P    +T+ L  +++   +++ L
Sbjct: 30  YTADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTVFTQSNQFKKAL 89

Query: 200 EIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL---- 254
           EIFE M +  GC PD  T   +I  C       Q   +   M  +      + +N+    
Sbjct: 90  EIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVKPSIVTYNILIHG 149

Query: 255 YGEKGVARS 263
           YG+ G+ R 
Sbjct: 150 YGKAGLFRE 158


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 92/186 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +  EM    I P + ++  +   Y+K G +     + N+M   G+  D    N++L+
Sbjct: 347 AYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLS 406

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y +LG+FE   +V   M       D+ TYN L++ YG+ G   ++  +F+ +   R+ P
Sbjct: 407 IYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFP 466

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+++ +  YS+  LY   +E+F E   AG   D      LI+A      ++    L+
Sbjct: 467 NLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLL 526

Query: 238 RTMHKD 243
             M K+
Sbjct: 527 DEMTKE 532



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  ++ EMK LGI     S+  LL+ Y+K G       V  +M  SG+K D    N+
Sbjct: 379 LEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNA 438

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ YG+ G+F ++  V   M+K     ++ TY+ LI++Y +G   E+   +F+      
Sbjct: 439 LLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAG 498

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LK DVV ++  + A  +  L    + + +EM   G  P+  T   +I A
Sbjct: 499 LKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDA 547



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 7/214 (3%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTF 110
           S YF +A  VFE MK  G+ P + ++  ++ A  K G    +   +  +M ++G++PD  
Sbjct: 235 SGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRI 294

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             NS+L +  R G +E    +   M       D+ TYN L++   +GG ++    +   +
Sbjct: 295 TYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           P K++ P+VVT+++    Y++       L ++ EM   G   D  +   L+S  +   + 
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRF 414

Query: 231 EQVTTLVRTM-----HKDMKTALPIYFNLYGEKG 259
           E    + + M      KD+ T   +  + YG++G
Sbjct: 415 EDALKVCKEMGSSGVKKDVVTYNAL-LDGYGKQG 447



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 88/191 (46%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           + F     +FEEM R G+ P   ++  LL   S+ G       + N+M   G+  D F  
Sbjct: 272 VEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTY 331

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++L+   + GQ +   E++  M       ++ TY+ + + Y + G +E    L+  +  
Sbjct: 332 NTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKF 391

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             +  D V++ + L+ Y++   +   L++ +EM  +G   D  T   L+     + +  +
Sbjct: 392 LGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNE 451

Query: 233 VTTLVRTMHKD 243
           VT + + M KD
Sbjct: 452 VTRVFKEMKKD 462



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 1/153 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++   + G V   +GV       G     F  +++++ YG+ G F++  +V  +M+   
Sbjct: 193 MISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSG 252

Query: 140 YAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
              ++ TYN +I+  G+GG   +++  +F+ +    ++PD +T+ S LA  SR  L+   
Sbjct: 253 LKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAA 312

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             +F EMID G   D  T   L+ A     Q++
Sbjct: 313 RNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMD 345



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 73/130 (56%), Gaps = 3/130 (2%)

Query: 113 NSMLNLYGRLGQFEKMEEVL-TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           ++M++  GRLG+ E  + V  TA+ +G Y   +  ++ LI+ YG+ G+ ++   +F+S+ 
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEG-YGNTVFAFSALISAYGKSGYFDEAIKVFESMK 249

Query: 172 AKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
              LKP++VT+ + + A  +  + ++R +EIFEEM+  G  PD  T   L++ CS     
Sbjct: 250 VSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLW 309

Query: 231 EQVTTLVRTM 240
           E    L   M
Sbjct: 310 EAARNLFNEM 319



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFE     G   T+ +   L++AY K+G   +   V   M  SGLKP+    N++++
Sbjct: 206 AKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVID 265

Query: 118 LYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             G+ G +F+++ E+   M +     D  TYN L+ +  RGG  E    LF  +  + + 
Sbjct: 266 ACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGID 325

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DV T+ + L A  +        EI  EM      P+  T   +    +   ++E    L
Sbjct: 326 QDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNL 385

Query: 237 VRTM 240
              M
Sbjct: 386 YNEM 389



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 50  IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + SIY     F DA  V +EM   G+   + ++  LL  Y K G   +   V  +M K  
Sbjct: 404 LLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDR 463

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           + P+    ++++++Y +   +E+  EV    ++    AD+  Y+ LIN   + G ++   
Sbjct: 464 VFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAV 523

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            L   +  + ++P+VVT+ S + A+ R
Sbjct: 524 LLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 28/212 (13%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL  +  +  +Y     + +A  VF E K+ G+   +  +  L+ A  K G V     +
Sbjct: 466 PNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLL 525

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKM-EEVLTAMEKGSYAADISTYNILI---- 151
           +++M K G++P+    NS+++ +GR    E + + V  + E+ S +       +LI    
Sbjct: 526 LDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPSF----MLIEGVD 581

Query: 152 --NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
              I    G + K    +Q L +++  P       RL     K+  R  L +F++M +  
Sbjct: 582 ESEINWDDGHVFK---FYQQLVSEKEGP---AKKERLG----KEEIRSILSVFKKMHELE 631

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             P+  T   +++ACS    IE  + L+  + 
Sbjct: 632 IKPNVVTFSAILNACSRCKSIEDASMLLEELR 663


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFEEM + G+  T  ++  L+  +S+ G V + + + N   K G++PD  + N+++N
Sbjct: 308 ALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALIN 367

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  E+  E++  MEK     D  TYN L+  +   G +++   L   +  + ++P
Sbjct: 368 SHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQP 427

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+V++ + ++ YS K   +  L + +EM+D G  P   T   LI       Q +    L+
Sbjct: 428 DLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLM 487

Query: 238 RTM 240
           + M
Sbjct: 488 KEM 490



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 86/177 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA+AV EEM++ G +P + ++ +L+  Y K GN  K   V  +M + G++       S+
Sbjct: 271 SDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSL 330

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + ++ R GQ ++ + +     K     D+  YN LIN +  GG +E+   +   +  KR+
Sbjct: 331 IYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRI 390

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            PD +T+ + +  +           + +EM   G  PD  +   LIS  S +  I+ 
Sbjct: 391 PPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKD 447



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           E+M + GI  T+ ++ LL+ A       +    V+ +M K+G  PD F  N ++N Y + 
Sbjct: 243 EDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKE 302

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  +K  EV   M +    A   TY  LI ++ R G +++ + LF     K ++PDVV +
Sbjct: 303 GNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMY 362

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + + ++       R  EI  EM      PD  T   L+       ++++  TL+  M K
Sbjct: 363 NALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTK 422



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 86/190 (45%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + +T  ++VF       +   +F    + GI P +  +  L+ ++   G++ +   ++ +
Sbjct: 325 VTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAE 384

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M K  + PD    N+++  +  LG+ ++   ++  M K     D+ +YN LI+ Y   G 
Sbjct: 385 MEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGD 444

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I+    +   +  K   P ++T+ + +    + +       + +EM+  G  PD  T   
Sbjct: 445 IKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYIS 504

Query: 220 LISACSSEDQ 229
           LI   ++ED+
Sbjct: 505 LIEGLTTEDE 514



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 2/181 (1%)

Query: 58  AHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSM 115
           A  V  EM+ R GI P   ++  L++ + K G +     V ++M   G + P   + N++
Sbjct: 166 ALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNAL 225

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y  +G+ +   +    M +   A  ++TYN+L++             + + +     
Sbjct: 226 IGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGF 285

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+   +  Y ++   ++ LE+FEEM   G      T   LI   S + Q+++   
Sbjct: 286 SPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDR 345

Query: 236 L 236
           L
Sbjct: 346 L 346


>gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
           chloroplastic-like [Cucumis sativus]
          Length = 489

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  DAH VF+EM     +    +   L++ Y++ G       +  QM + G++PD F   
Sbjct: 104 YMEDAHQVFDEMGNRNFSAFAWNS--LISGYAELGLYEDALALYFQMEEEGVEPDNFTFP 161

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L   G +G  +  E V   + +  +A D+   N L+++Y + G I +   +F  +  K
Sbjct: 162 RVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYK 221

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
               D+V+W S L  Y+R  L+   L+IF++MI  G  PD      L+S  SS
Sbjct: 222 ----DIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISS 270



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 15/186 (8%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +LT Y++ G   +   + +QM + G +PD+  ++++L+    +   +    +   + +  
Sbjct: 229 MLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLS---NISSMKFKLHIHGWVIRHG 285

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              ++S  N LI +Y + G + + + LFQ +P K    D+V+W S ++A+         L
Sbjct: 286 VEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQK----DMVSWNSIISAHFNSA---EAL 338

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD--MKTALPIY---FNL 254
             FE M   G  PDG T   L+S C+    +++   L   M     ++  +  Y    NL
Sbjct: 339 TYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNL 398

Query: 255 YGEKGV 260
           YG  G+
Sbjct: 399 YGRAGM 404



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 50  IFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLK 106
           I S +F+ A A+  FE M+ LG++P   + + LL+  +  G V +   +   M  K G++
Sbjct: 327 IISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIR 386

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLT 133
           P       M+NLYGR G  E+  +++T
Sbjct: 387 PTIEHYACMVNLYGRAGMIEEAYKIIT 413


>gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g25270, chloroplastic-like [Cucumis sativus]
          Length = 489

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  DAH VF+EM     +    +   L++ Y++ G       +  QM + G++PD F   
Sbjct: 104 YMEDAHQVFDEMGNRNFSAFAWNS--LISGYAELGLYEDALALYFQMEEEGVEPDNFTFP 161

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L   G +G  +  E V   + +  +A D+   N L+++Y + G I +   +F  +  K
Sbjct: 162 RVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYK 221

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
               D+V+W S L  Y+R  L+   L+IF++MI  G  PD      L+S  SS
Sbjct: 222 ----DIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISS 270



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 15/186 (8%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +LT Y++ G   +   + +QM + G +PD+  ++++L+    +   +    +   + +  
Sbjct: 229 MLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLS---NISSMKFKLHIHGWVIRHG 285

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              ++S  N LI +Y + G + + + LFQ +P K    D+V+W S ++A+         L
Sbjct: 286 VEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQK----DMVSWNSIISAHFNSA---EAL 338

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD--MKTALPIY---FNL 254
             FE M   G  PDG T   L+S C+    +++   L   M     ++  +  Y    NL
Sbjct: 339 TYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELYFLMKGKYGIRPTIEHYACMVNL 398

Query: 255 YGEKGV 260
           YG  G+
Sbjct: 399 YGRAGM 404



 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 50  IFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLK 106
           I S +F+ A A+  FE M+ LG++P   + + LL+  +  G V +   +   M  K G++
Sbjct: 327 IISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELYFLMKGKYGIR 386

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLT 133
           P       M+NLYGR G  E+  +++T
Sbjct: 387 PTIEHYACMVNLYGRAGMIEEAYKIIT 413


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 6/188 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +  EM R G+ P + ++  ++    K GN+ +   ++ +M  +G  PDT    ++++
Sbjct: 471 ANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMD 530

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++G+  K  E+L  M        + T+N+L+N +   G +E  E L + +  K + P
Sbjct: 531 AYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMP 590

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTL 236
           +  T+ S +  Y  K   R   EI++ M D G  PD  T  +LI   C + +  E     
Sbjct: 591 NATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKE----- 645

Query: 237 VRTMHKDM 244
              +HK+M
Sbjct: 646 AWFLHKEM 653



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 91/185 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +V  +M + G+TP + ++  L     K G +     ++++M + GL+P+ +  N+++
Sbjct: 435 EAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIV 494

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   ++G  E+  +++  M+   +  D  TY  L++ Y + G + K   L + +  KRL+
Sbjct: 495 NGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQ 554

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +VT+   +  +    +      + E M++ G  P+  T   L+     ++ +   T +
Sbjct: 555 PTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEI 614

Query: 237 VRTMH 241
            + MH
Sbjct: 615 YKAMH 619



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 98/200 (49%), Gaps = 2/200 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +F+EM+R  I P + ++  ++    K+G + +   + N+M   GL+PD     ++
Sbjct: 364 SAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTAL 423

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y + G+ ++   V   M +     ++ TY  L +   + G I+    L   +  K L
Sbjct: 424 IDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGL 483

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+V T+ + +    +     + +++ EEM  AG YPD  T   L+ A     ++ +   
Sbjct: 484 QPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHE 543

Query: 236 LVRTM-HKDMKTALPIYFNL 254
           L+R M +K ++  L + FN+
Sbjct: 544 LLRIMLNKRLQPTL-VTFNV 562



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 84/167 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +  +M   G  P + S+ ++++ Y + G + K   +++++   GLKPD ++ N+++
Sbjct: 260 EAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNII 319

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            L  + G+  + E++L  M K     D   Y  +I+ + + G +     LF  +  K++ 
Sbjct: 320 LLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIV 379

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD+VT+TS +    +        E+F EM+  G  PD  T   LI  
Sbjct: 380 PDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDG 426



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 83/184 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM   G+ P   ++  L+  Y K G + +   V NQM + GL P+     ++ 
Sbjct: 400 EAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALA 459

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+ +   E+L  M +     ++ TYN ++N   + G IE+   L + +      
Sbjct: 460 DGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFY 519

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD +T+T+ + AY +     +  E+   M++    P   T  VL++       +E    L
Sbjct: 520 PDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERL 579

Query: 237 VRTM 240
           +  M
Sbjct: 580 IEWM 583



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 80/180 (44%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +E+K  G+ P    +  ++    K G V + E ++  M K G+ PD  V  ++++ + +L
Sbjct: 301 DELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKL 360

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G      ++   M +     DI TY  +I+   + G + +   +F  +  K L+PD VT+
Sbjct: 361 GNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTY 420

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           T+ +  Y +    +    +  +M+  G  P+  T   L        +I+    L+  M +
Sbjct: 421 TALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSR 480



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 80/184 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +   M++ G+ P    +  +++ + K GNV+    + ++M +  + PD     S++
Sbjct: 330 EAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVI 389

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+  +  E+   M       D  TY  LI+ Y + G +++   +   +  K L 
Sbjct: 390 HGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLT 449

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VVT+T+      +        E+  EM   G  P+  T   +++       IEQ   L
Sbjct: 450 PNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKL 509

Query: 237 VRTM 240
           +  M
Sbjct: 510 MEEM 513



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/210 (19%), Positives = 83/210 (39%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           + AH +   M    + PT+ +  +L+  +  +G +   E +I  M + G+ P+    NS+
Sbjct: 539 AKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSL 598

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y          E+  AM       D +TYNILI  + +   +++   L + +  K  
Sbjct: 599 MKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGY 658

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
                T+ + +  + ++K +    ++FEEM   G   +     + +     E   E    
Sbjct: 659 SVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEITLE 718

Query: 236 LVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
           L      ++   + + +  +   G   SN 
Sbjct: 719 LCDEFMTELSGTIFVVYICFFIGGSVESNF 748



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 75/182 (41%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM   G  P   ++  L+ AY K G +AK   ++  M    L+P     N ++N + 
Sbjct: 509 LMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFC 568

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G  E  E ++  M +     + +T+N L+  Y     +     +++++  + + PD  
Sbjct: 569 MSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSN 628

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  + + +  +    + +EM++ G      T   LI       +  +   L   M
Sbjct: 629 TYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEM 688

Query: 241 HK 242
            K
Sbjct: 689 RK 690



 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S    D   + E M   GI P   +   L+  Y    N+     +   MH  G+ PD
Sbjct: 567 FCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPD 626

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLF 167
           +   N ++  + +    ++   +   M +  Y+   +TY+ LI   Y R  F+E  + LF
Sbjct: 627 SNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARK-LF 685

Query: 168 QSL 170
           + +
Sbjct: 686 EEM 688


>gi|297733647|emb|CBI14894.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 94/183 (51%), Gaps = 2/183 (1%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H+    +  +S+  +   A+  FE MKR GI P+++++  LL A+ + G+      +   
Sbjct: 455 HSYTALIHAYSVGGWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKL 514

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M    ++      N +L+ + + G + +  +V+    K  +   + TYN+L+N Y RGG 
Sbjct: 515 MLSDKIEGTRVTFNILLDGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQ 574

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             ++  L + + +  LKPD +T+++ + AY R + ++R     ++M+ +G  PD  + + 
Sbjct: 575 HSRLPQLLKEMTSLNLKPDSITYSTMIYAYVRVRDFKRAFFYHKQMVKSGQVPDPQSYQK 634

Query: 220 LIS 222
           L S
Sbjct: 635 LRS 637



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 1/200 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +  EM++ GI+     +  L+ AYSK+  V + EG+  +M   G+ P +   N +
Sbjct: 330 NEALIIQSEMEKKGISSNAIVYNTLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNIL 389

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKR 174
           ++ Y R  Q E +E +L  M+      ++ +Y  LI+ YGR   +  M    F  +    
Sbjct: 390 MDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVG 449

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP   ++T+ + AYS    + +    FE M   G  P   T   L+ A       + + 
Sbjct: 450 IKPTSHSYTALIHAYSVGGWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLM 509

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            + + M  D      + FN+
Sbjct: 510 KIWKLMLSDKIEGTRVTFNI 529



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 2/200 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA   F+ M R G+  +++    L+ ++   G   +   + ++M K G+  +  V N+++
Sbjct: 296 DAWEFFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLM 355

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +  + E+ E +   M+        +TYNIL++ Y R    E +E L   +    L+
Sbjct: 356 DAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDMGLE 415

Query: 177 PDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           P+V ++T  ++AY R KK+     + F  M   G  P   +   LI A S     E+  T
Sbjct: 416 PNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKAYT 475

Query: 236 LVRTMHKD-MKTALPIYFNL 254
               M ++ +K ++  Y  L
Sbjct: 476 AFENMKREGIKPSIETYTAL 495



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 85/178 (47%), Gaps = 1/178 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EM+ +G+ P +KS+  L++AY +   ++        +M K G+KP +    ++++ Y   
Sbjct: 408 EMQDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVG 467

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  EK       M++      I TY  L++ + R G  + +  +++ + + +++   VT+
Sbjct: 468 GWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTF 527

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              L  ++++  Y    ++  E    G  P   T  +L++A +   Q  ++  L++ M
Sbjct: 528 NILLDGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEM 585



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 51/100 (51%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++ +A  V  E  ++G  PT+ ++ +L+ AY++ G  ++   ++ +M    LKPD+   +
Sbjct: 539 HYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKPDSITYS 598

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M+  Y R+  F++       M K     D  +Y  L +I
Sbjct: 599 TMIYAYVRVRDFKRAFFYHKQMVKSGQVPDPQSYQKLRSI 638


>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 511

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 84/162 (51%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ +Y   G + K E   ++     +KPD    N M+  YG+ G ++KM+ V+  ME+  
Sbjct: 280 LIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSVMDFMERRF 339

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +A  I TYN +I +YG+ G IEKM+  F+++    +KP+ VT+ S + AYS+  L R+  
Sbjct: 340 FAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKID 399

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            I   + ++    D      +ISA      ++++  L   M 
Sbjct: 400 SILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLAMR 441



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 5/210 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           F     V  +M   GI     ++  ++  Y K G   + E  +  M      +PD F +N
Sbjct: 219 FDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLTDMIENENCQPDVFTLN 278

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++  YG  G+ +KME+     +  S   DI T+N++I  YG+ G  +KM+ +   +  +
Sbjct: 279 SLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSVMDFMERR 338

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P +VT+ + +  Y +     +  + F+ M   G  P+  T   L++A S    I ++
Sbjct: 339 FFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKI 398

Query: 234 TTLVRTM-HKDMKTALPIY---FNLYGEKG 259
            +++R + + D+    P +    + YG+ G
Sbjct: 399 DSILRHVENSDVILDTPFFNCIISAYGQVG 428



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 7/179 (3%)

Query: 37  FLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           F L+   P++  F   I        +    +V + M+R    PT+ ++  ++  Y K G 
Sbjct: 300 FQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGE 359

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           + K +     M   G+KP++    S++N Y + G   K++ +L  +E      D   +N 
Sbjct: 360 IEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDTPFFNC 419

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           +I+ YG+ G ++KM  LF ++ A++ +PD  T+T  + AY+ + +      +   MI A
Sbjct: 420 IISAYGQVGDLKKMGELFLAMRARKCEPDRTTFTCMIQAYNTQGITEAAKNLETMMISA 478



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 85/179 (47%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           ++E + + I P +K+  +++ +Y K G   K + V++ M +    P     N+++ +YG+
Sbjct: 297 YDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGK 356

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+ EKM++    M+      +  TY  L+N Y + G I K++ + + +    +  D   
Sbjct: 357 AGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDTPF 416

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +   ++AY +    ++  E+F  M    C PD  T   +I A +++   E    L   M
Sbjct: 417 FNCIISAYGQVGDLKKMGELFLAMRARKCEPDRTTFTCMIQAYNTQGITEAAKNLETMM 475



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 93/209 (44%), Gaps = 6/209 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSM 115
           +A  ++E M   G+ PT+     L++AY ++G        I  M      KPD +  + +
Sbjct: 150 EASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVVDCKPDVYTYSVL 209

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME-GLFQSLPAKR 174
           ++   +  +F+ +E VL  M       +  TYN +I+ YG+ G  E+ME  L   +  + 
Sbjct: 210 ISCCAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLTDMIENEN 269

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PDV T  S + +Y       +  + ++E       PD  T  ++I +       +++ 
Sbjct: 270 CQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMK 329

Query: 235 TLVRTMHKDMKTALPIYFN----LYGEKG 259
           +++  M +       + +N    +YG+ G
Sbjct: 330 SVMDFMERRFFAPTIVTYNTVIEVYGKAG 358



 Score = 40.4 bits (93), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y     TY  L+ +  +    ++   L++++  + LKP V   T+ ++AY +  L+R   
Sbjct: 128 YEPRCQTYTKLLMMLSKCKQPKEASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAF 187

Query: 200 EIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              E+M     C PD  T  VLIS C+   + + +  ++  M
Sbjct: 188 STIEDMKSVVDCKPDVYTYSVLISCCAKFRRFDLIERVLADM 229


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  FS+A +V  EM+     P   ++  ++ AY + G   +   VI+ M   G+
Sbjct: 335 LHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGI 394

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+     +++N YGR+G  +K  E+   M +     +++TYN ++ + G+    E+M  
Sbjct: 395 MPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMK 454

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +   +      P+ +TW + LA   +K +++   ++F EM + G  PD  T   LISA  
Sbjct: 455 ILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYG 514

Query: 224 -CSSEDQIEQVTTLVRTMHKDMKTA 247
            C S +   +       MH++M  A
Sbjct: 515 RCGSNNDAAK-------MHEEMIKA 532



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 105/219 (47%), Gaps = 36/219 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN---------------------------V 90
           A  +FE M   G++P++ ++ ++L  Y K G                            +
Sbjct: 241 AIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVL 300

Query: 91  AKC--EGVINQ-------MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141
           + C  EG+I++       +   G KP T   N++L+++G+ G F +   VL+ ME+ +  
Sbjct: 301 SACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCP 360

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            D  TYN ++  Y R GF E+   +  ++ +K + P+ VT+T+ + AY R     + LE+
Sbjct: 361 PDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEM 420

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           F++M++ GC P+  T   ++     +   E++  ++  M
Sbjct: 421 FDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHM 459



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA-------------------------- 91
           A +V  +M+  G  P+  S+ L++ +Y+K GNV                           
Sbjct: 557 AESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVL 616

Query: 92  ---KC------EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
              KC      E     + K G KPD  + NSML+++ +   +++  E+L  +       
Sbjct: 617 ANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQP 676

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+ T+N L+++Y RGG   K E + + L     KPD+V++ + +  + RK L +  + I 
Sbjct: 677 DLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRIL 736

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            EM   G  P   T    IS  +++    ++  ++  M
Sbjct: 737 SEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYM 774



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 81/151 (53%), Gaps = 1/151 (0%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L AYS+TG   +   +  +M++SGL P     N ML++YG++G+ ++K+ E+L
Sbjct: 222 VRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELL 281

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +++  GR G I++    F  L ++  KP  VT+ + L  + + 
Sbjct: 282 DEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKA 341

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            ++   L +  EM +  C PD  T   +++A
Sbjct: 342 GIFSEALSVLSEMEENNCPPDAVTYNEVVAA 372



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F  +K  G  P   ++  LL  + K G  ++   V+++M ++   PD    N 
Sbjct: 309 IDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNE 368

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R G  E+   V+ AM       +  TY  +IN YGR G I+K   +F  +    
Sbjct: 369 VVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELG 428

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+ + L    +K L    ++I   M   GC P+  T   +++ C  +   + V 
Sbjct: 429 CVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVN 488

Query: 235 TLVRTM 240
            + R M
Sbjct: 489 QVFREM 494



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  + EEM + G +P + ++  LL A ++ G+    E VI  M   G +P     + M
Sbjct: 520 NDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLM 579

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF----IEKMEGLFQSLP 171
           ++ Y + G  + +E +    EK  Y  DI    +L+       F    +  ME  FQ+L 
Sbjct: 580 VHSYAKGGNVKGIEMI----EKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQ 635

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
               KPD+V   S L+ +++  +Y R  E+   + DAG  PD
Sbjct: 636 KHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPD 677



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 93/194 (47%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            ++ + +  +   V + M   GI P   ++  ++ AY + G++ K   + +QM + G  P
Sbjct: 372 AYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVP 431

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +    N++L + G+    E+M ++L  M+    + +  T+N ++ + G+ G  + +  +F
Sbjct: 432 NVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVF 491

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +     +PD  T+ + ++AY R        ++ EEMI AG  P   T   L++A +  
Sbjct: 492 REMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARR 551

Query: 228 DQIEQVTTLVRTMH 241
              +   +++  M 
Sbjct: 552 GDWKAAESVILDMR 565



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 96/202 (47%), Gaps = 8/202 (3%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F+ +++ G  P +     +L+ ++K     +   ++  +H +GL+PD    NS++++Y 
Sbjct: 630 AFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYA 689

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G   K EEVL  ++      D+ +YN +I  + R G +++   +   + +  + P + 
Sbjct: 690 RGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIF 749

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + ++ Y+ + ++    ++   MI   C P+  T K++        + ++    V  +
Sbjct: 750 TYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRYDEAIDFVSKI 809

Query: 241 HKDMKTALPIYFNLYGEKGVAR 262
            KD+        + +G++ V R
Sbjct: 810 -KDVD-------DTFGDQSVRR 823



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/184 (19%), Positives = 84/184 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F++M  LG  P + ++  +L    K     +   ++  M  +G  P+    N+ML 
Sbjct: 417 ALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLA 476

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           + G+ G  + + +V   M+   +  D  T+N LI+ YGR G       + + +      P
Sbjct: 477 MCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSP 536

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            + T+ + L A +R+  ++    +  +M + G  P   +  +++ + +    ++ +  + 
Sbjct: 537 CINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIE 596

Query: 238 RTMH 241
           ++++
Sbjct: 597 KSIY 600



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 5/159 (3%)

Query: 80  LLTAYSKTGNVAKC----EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           LL A   +GN  K     E  +  +  +  K D   I  M+ + GR  Q     ++   +
Sbjct: 154 LLKALDYSGNWEKALLLFEWSVLNLGIANEKIDRHAIELMVRILGRESQHTVASKLFDVI 213

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-KKL 194
               Y  D+  Y  +++ Y R G   +   +F+ +    L P +VT+   L  Y +  + 
Sbjct: 214 PLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRS 273

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           + + LE+ +EM   G   D  T   ++SAC  E  I++ 
Sbjct: 274 WDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEA 312



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 69/163 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +   MK  G +P   +   +L    K G       V  +M   G +PD    N++++ YG
Sbjct: 455 ILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYG 514

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G      ++   M K  ++  I+TYN L+N   R G  +  E +   +  K  +P   
Sbjct: 515 RCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSET 574

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +++  + +Y++    +    I + + D   +P     + L+ A
Sbjct: 575 SYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLA 617


>gi|356575210|ref|XP_003555735.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Glycine max]
          Length = 609

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 98/189 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  VFEE+   G      ++  ++ AY + G  +K E V  +M + G     +  ++
Sbjct: 386 FLAAVKVFEELISKGYESGQVTYASVINAYWRLGQYSKAEEVFLEMEQKGFDKCVYAYST 445

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+ +YGR G+     +++  M++     ++  YN LI+++GR   ++++E L++ +  +R
Sbjct: 446 MIVMYGRTGRVRSAMKLVAKMKERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKEMKRRR 505

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD V++TS + AYS+   +  C++ F E    G   D   A +++   S    ++++ 
Sbjct: 506 VAPDKVSYTSIIGAYSKAGEFETCVKFFNEYRMNGGLIDRAMAGIMVGVFSKVGLVDELV 565

Query: 235 TLVRTMHKD 243
            L++ M  +
Sbjct: 566 KLLQDMKAE 574



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 73/166 (43%)

Query: 77  HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
           ++ L+  Y + G + K   V+ +M  + +K    ++ +++N + +   F    +V   + 
Sbjct: 338 YLKLVHMYIEEGLLEKTLEVVKEMEDADVKVSDCILCTVVNGFSKKRGFLAAVKVFEELI 397

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
              Y +   TY  +IN Y R G   K E +F  +  K     V  +++ +  Y R    R
Sbjct: 398 SKGYESGQVTYASVINAYWRLGQYSKAEEVFLEMEQKGFDKCVYAYSTMIVMYGRTGRVR 457

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             +++  +M + GC P+      LI     +  ++Q+  L + M +
Sbjct: 458 SAMKLVAKMKERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKEMKR 503



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 35/170 (20%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A  VF EM++ G    + ++  ++  Y +TG V     ++ +M + G KP+ ++ NS
Sbjct: 421 YSKAEEVFLEMEQKGFDKCVYAYSTMIVMYGRTGRVRSAMKLVAKMKERGCKPNVWIYNS 480

Query: 115 MLNLYGR-----------------------------------LGQFEKMEEVLTAMEKGS 139
           +++++GR                                    G+FE   +         
Sbjct: 481 LIDMHGRDKNLKQLEKLWKEMKRRRVAPDKVSYTSIIGAYSKAGEFETCVKFFNEYRMNG 540

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
              D +   I++ ++ + G ++++  L Q + A+  + D   + S   A+
Sbjct: 541 GLIDRAMAGIMVGVFSKVGLVDELVKLLQDMKAEGTRLDQRLYQSAWNAF 590



 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 45/99 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +++EMKR  + P   S+  ++ AYSK G    C    N+   +G   D  +   M+ ++ 
Sbjct: 497 LWKEMKRRRVAPDKVSYTSIIGAYSKAGEFETCVKFFNEYRMNGGLIDRAMAGIMVGVFS 556

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           ++G  +++ ++L  M+      D   Y    N +   G 
Sbjct: 557 KVGLVDELVKLLQDMKAEGTRLDQRLYQSAWNAFKDAGL 595


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++F++MK  GI P + ++ +++++Y + G V K  G+   M+ S  KPD    NS++N  
Sbjct: 449 SLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCL 508

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+ G  ++   +   M++  Y  D+ TY+ILI  +G+   ++    LF  + A+   P+V
Sbjct: 509 GKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNV 568

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           VT+   L    R        + +E M   G  PD  T  +L
Sbjct: 569 VTYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSIL 609



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 90/189 (47%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S + S+AH VF +M     T    + + +L     +G   +   +++ M + G+  D  +
Sbjct: 371 SGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMPEKGVATDVGM 430

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N + +  G+L Q   +  +   M+    A D+ TYNI+I+ YGR G ++K  GLF+ + 
Sbjct: 431 YNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMN 490

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           A   KPDV+T+ S +    +         +F+EM + G  PD  T  +LI      ++++
Sbjct: 491 ASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVD 550

Query: 232 QVTTLVRTM 240
               L   M
Sbjct: 551 MACNLFLDM 559



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +   M   G+   +  + ++ +A  K   V+    + ++M  +G+ PD F  N M+
Sbjct: 411 EAIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMI 470

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YGR+G  +K   +   M   S   D+ TYN LIN  G+ G +++   LF+ +  K   
Sbjct: 471 SSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYG 530

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV T++  +  + +         +F +MI  GC P+  T  +L+       +  +    
Sbjct: 531 PDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKH 590

Query: 237 VRTMHK 242
             TM +
Sbjct: 591 YETMKQ 596



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 81/173 (46%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +L A+ ++  V+K   V  +M + G   D F  N +L+   + G  ++  +V   M++  
Sbjct: 192 ILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKY 251

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TY ILI + GR G   K    F  + +K    +++ + + + A  + K+  + +
Sbjct: 252 CEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVI 311

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
            +  +MI+ GC P+  T  + +   + E Q+ ++  ++    + M  ++  Y 
Sbjct: 312 FVLSKMIEGGCQPNQFTYSITLDILAKEGQLHRLNEVLDICDRYMNKSIYSYL 364



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 3/185 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +  EM+R G++  + +  LL+        V KC   +    K GL+ + +    +
Sbjct: 136 SEALRIVSEMERDGVSGNISTVNLLVGIGGGGVEVTKC---LELAMKWGLRLNGYTYKCI 192

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  + R  +  K  EV   M +  Y  DI  YN+L++   + G +++   +F+ +  K  
Sbjct: 193 LQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYC 252

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PD  T+T  +    R     + L  F+EM+  GC  +      LI A      +++V  
Sbjct: 253 EPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIF 312

Query: 236 LVRTM 240
           ++  M
Sbjct: 313 VLSKM 317



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 77/163 (47%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ + SK+G+V++   V  QM  S    D     SML +    G+  +  ++L  M +  
Sbjct: 364 LVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMPEKG 423

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            A D+  YN++ +  G+   +  +  LF  + A  + PD+ T+   +++Y R  L  +  
Sbjct: 424 VATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKAS 483

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +FE+M  + C PD  T   LI+       +++   L + M +
Sbjct: 484 GLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQE 526



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 66/148 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S    V+EEM+R G    +  + +LL A +K+G V +   V   M +   +PD +    +
Sbjct: 203 SKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPDAYTYTIL 262

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + + GR G+  K       M     A ++  YN LI   G+   ++K+  +   +     
Sbjct: 263 IRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGC 322

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +P+  T++  L   +++    R  E+ +
Sbjct: 323 QPNQFTYSITLDILAKEGQLHRLNEVLD 350



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 3/184 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           + F+EM   G    + ++  L+ A  K   V K   V+++M + G +P+ F  +  L++ 
Sbjct: 277 SFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLDIL 336

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + GQ  ++ EVL   ++     + S Y+ L+    + G + +   +F  +       D 
Sbjct: 337 AKEGQLHRLNEVLDICDR---YMNKSIYSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDR 393

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
             + S L            +++   M + G   D G   ++ SA     Q+  +T+L   
Sbjct: 394 DAFVSMLEVLCNSGKTLEAIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDK 453

Query: 240 MHKD 243
           M  +
Sbjct: 454 MKAN 457


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A A FE++K  G  P + ++  LL  + K GN  +   V+ +M  SG +PD    N 
Sbjct: 267 LDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNE 326

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +   Y R G FE+  + L  M       +  TYN ++  Y   G +++   LF  +    
Sbjct: 327 LAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNG 386

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+        +K  +   LE+ EEM  +GC P+  T   +++ C      + VT
Sbjct: 387 YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVT 446

Query: 235 TLVRTM 240
            ++  M
Sbjct: 447 RVLNGM 452



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 36/227 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA----------------------- 91
           +S A ++  +M + G  P  +S+ LLL  Y+K GN A                       
Sbjct: 512 WSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRT 571

Query: 92  ------KC---EGV---INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                 KC   EGV     ++   G KPD  + NSML +Y + G + K  E+  ++++  
Sbjct: 572 LVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSG 631

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + D+ TYN L+++Y +     + E + + L + ++KPDVV++ + +  + ++ L +   
Sbjct: 632 LSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQ 691

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMK 245
            I  EMI  G  P   T   L+   +S +   +   +V  M H ++K
Sbjct: 692 RILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLK 738



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 4/195 (2%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L A S+ G   +   +  ++ + G+ P     N +L++YGR+G+ + ++  +L
Sbjct: 180 VRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALL 239

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I   GR G +++    F+ L A+   P VVT+ + L  + + 
Sbjct: 240 EEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKA 299

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
             Y   L + +EM D+GC PD  T   L    +     E+    + TM    K  LP  F
Sbjct: 300 GNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTS--KGLLPNTF 357

Query: 253 NLYGEKGVARSNLGQ 267
             Y     A +N+G+
Sbjct: 358 T-YNTVMTAYANVGR 371



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EM   G TP + ++  LL   S+ G+ +  + ++++M K+G KP+    + +L 
Sbjct: 480 AFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQ 539

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF----IEKMEGLFQSLPAK 173
            Y + G    +E +    EK  Y   I    +++       F    +E +E  FQ + A+
Sbjct: 540 CYAKGGNAAGIESI----EKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQ 595

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             KPD+V + S LA Y++  LY +  E+F+ +  +G  PD
Sbjct: 596 GYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPD 635



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 77/152 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F+E+K  G  P +     +L  Y+K G  +K   + + + +SGL PD    NS++++Y 
Sbjct: 588 AFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYA 647

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  +  + E++L  ++      D+ +YN +IN + + G I++ + +   + A  + P VV
Sbjct: 648 KSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVV 707

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           T+ + +  Y+  +++    E+   MI     P
Sbjct: 708 TYHTLVGGYASLEMFNEAREVVNYMIHHNLKP 739



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A  V +EM+  G  P   ++  L   Y++ G   +    ++ M   GL
Sbjct: 293 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGL 352

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+TF  N+++  Y  +G+ ++   +   M+K  Y  +++TYN++  + G+      M  
Sbjct: 353 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLE 412

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + + +      P+ VTW + LA   ++ +      +   M   G      T   LISA
Sbjct: 413 MLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISA 470



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 89/190 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F +A    + M   G+ P   ++  ++TAY+  G V +   + ++M K+G  P+    N
Sbjct: 336 FFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYN 395

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +  + G+  +F  M E+L  M +     +  T+N ++ + G+ G  + +  +   + + 
Sbjct: 396 LIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSC 455

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++    T+ + ++AY R        ++++EMI +G  P   T   L++  S +      
Sbjct: 456 GVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 515

Query: 234 TTLVRTMHKD 243
            ++V  M K+
Sbjct: 516 QSIVSKMLKN 525



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 85/173 (49%), Gaps = 7/173 (4%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + P+L +F  + ++Y     +S A  +F+ +K+ G++P + ++  L+  Y+K+    + E
Sbjct: 597 YKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAE 656

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ Q+  S +KPD    N+++N + + G  ++ + +L+ M     A  + TY+ L+  Y
Sbjct: 657 KILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGY 716

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
                  +   +   +    LKP  +T+   + +Y + K Y    E   E+ D
Sbjct: 717 ASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISD 769



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 7/185 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +  + + Y       +A A+F+ MK+ G  P + ++ L+     K         +
Sbjct: 354 PNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEM 413

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M +SG  P+    N+ML + G+ G  + +  VL  M+         TYN LI+ YGR
Sbjct: 414 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 473

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       ++  + +    P + T+ + L   SR+  +     I  +M+  G  P+  +
Sbjct: 474 CGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 533

Query: 217 AKVLI 221
             +L+
Sbjct: 534 YSLLL 538



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 5/152 (3%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           N +  IF +      F+    + EEM R G TP   +   +L    K G       V+N 
Sbjct: 392 NTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNG 451

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G++      N++++ YGR G      ++   M    +   ++TYN L+N+  R G 
Sbjct: 452 MKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGD 511

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
               + +   +     KP+  +++  L  Y++
Sbjct: 512 WSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAK 543


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A A FE++K  G  P + ++  LL  + K GN  +   V+ +M  SG +PD    N 
Sbjct: 267 LDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNE 326

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +   Y R G FE+  + L  M       +  TYN ++  Y   G +++   LF  +    
Sbjct: 327 LAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNG 386

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+        +K  +   LE+ EEM  +GC P+  T   +++ C      + VT
Sbjct: 387 YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVT 446

Query: 235 TLVRTM 240
            ++  M
Sbjct: 447 RVLNGM 452



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 36/227 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA----------------------- 91
           +S A ++  +M + G  P  +S+ LLL  Y+K GN A                       
Sbjct: 512 WSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRT 571

Query: 92  ------KC---EGV---INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                 KC   EGV     ++   G KPD  + NSML +Y + G + K  E+  ++++  
Sbjct: 572 LVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSG 631

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + D+ TYN L+++Y +     + E + + L + ++KPDVV++ + +  + ++ L +   
Sbjct: 632 LSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQ 691

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMK 245
            I  EMI  G  P   T   L+   +S +   +   +V  M H ++K
Sbjct: 692 RILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLK 738



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 4/195 (2%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L A S+ G   +   +  ++ + G+ P     N +L++YGR+G+ + ++  +L
Sbjct: 180 VRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALL 239

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I   GR G +++    F+ L A+   P VVT+ + L  + + 
Sbjct: 240 EEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKA 299

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
             Y   L + +EM D+GC PD  T   L    +     E+    + TM    K  LP  F
Sbjct: 300 GNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTS--KGLLPNTF 357

Query: 253 NLYGEKGVARSNLGQ 267
             Y     A +N+G+
Sbjct: 358 T-YNTVMTAYANVGR 371



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EM   G TP + ++  LL   S+ G+ +  + ++++M K+G KP+    + +L 
Sbjct: 480 AFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQ 539

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF----IEKMEGLFQSLPAK 173
            Y + G    +E +    EK  Y   I    +++       F    +E +E  FQ + A+
Sbjct: 540 CYAKGGNAAGIESI----EKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQ 595

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             KPD+V + S LA Y++  LY +  E+F+ +  +G  PD
Sbjct: 596 GYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPD 635



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 77/152 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F+E+K  G  P +     +L  Y+K G  +K   + + + +SGL PD    NS++++Y 
Sbjct: 588 AFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYA 647

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  +  + E++L  ++      D+ +YN +IN + + G I++ + +   + A  + P VV
Sbjct: 648 KSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVV 707

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           T+ + +  Y+  +++    E+   MI     P
Sbjct: 708 TYHTLVGGYASLEMFNEAREVVNYMIHHNLKP 739



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A  V +EM+  G  P   ++  L   Y++ G   +    ++ M   GL
Sbjct: 293 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGL 352

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+TF  N+++  Y  +G+ ++   +   M+K  Y  +++TYN++  + G+      M  
Sbjct: 353 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLE 412

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + + +      P+ VTW + LA   ++ +      +   M   G      T   LISA
Sbjct: 413 MLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISA 470



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 89/190 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F +A    + M   G+ P   ++  ++TAY+  G V +   + ++M K+G  P+    N
Sbjct: 336 FFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYN 395

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +  + G+  +F  M E+L  M +     +  T+N ++ + G+ G  + +  +   + + 
Sbjct: 396 LIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSC 455

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++    T+ + ++AY R        ++++EMI +G  P   T   L++  S +      
Sbjct: 456 GVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 515

Query: 234 TTLVRTMHKD 243
            ++V  M K+
Sbjct: 516 QSIVSKMLKN 525



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 85/173 (49%), Gaps = 7/173 (4%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + P+L +F  + ++Y     +S A  +F+ +K+ G++P + ++  L+  Y+K+    + E
Sbjct: 597 YKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAE 656

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ Q+  S +KPD    N+++N + + G  ++ + +L+ M     A  + TY+ L+  Y
Sbjct: 657 KILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGY 716

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
                  +   +   +    LKP  +T+   + +Y + K Y    E   E+ D
Sbjct: 717 ASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISD 769



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 7/185 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +  + + Y       +A A+F+ MK+ G  P + ++ L+     K         +
Sbjct: 354 PNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEM 413

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M +SG  P+    N+ML + G+ G  + +  VL  M+         TYN LI+ YGR
Sbjct: 414 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 473

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       ++  + +    P + T+ + L   SR+  +     I  +M+  G  P+  +
Sbjct: 474 CGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 533

Query: 217 AKVLI 221
             +L+
Sbjct: 534 YSLLL 538



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 5/152 (3%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           N +  IF +      F+    + EEM R G TP   +   +L    K G       V+N 
Sbjct: 392 NTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNG 451

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G++      N++++ YGR G      ++   M    +   ++TYN L+N+  R G 
Sbjct: 452 MKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGD 511

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
               + +   +     KP+  +++  L  Y++
Sbjct: 512 WSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAK 543


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 95/187 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+E+   G  P   ++  LL A++K G+V + E V  ++ K+G + D    N+M+
Sbjct: 119 EAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMI 178

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++YG++G+ +    +   M       D  TY +L++  G+   I +   + + +    LK
Sbjct: 179 HMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLK 238

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +VT+++ + AY++          F+ M+++G  PD     V++   +  D+  ++  L
Sbjct: 239 PTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVL 298

Query: 237 VRTMHKD 243
            R M KD
Sbjct: 299 YRAMIKD 305



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA AVFEEM      P + ++  +++ + + G   + E +  ++ + G +PD    NS
Sbjct: 82  LDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNS 141

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + + G  E++E V   + K  +  D  TYN +I++YG+ G ++   GL+  + A  
Sbjct: 142 LLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIG 201

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             PD VT+T  + +  +        ++ EEM DAG  P   T   LI A
Sbjct: 202 CTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICA 250



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 91/176 (51%), Gaps = 2/176 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG--VINQMHKSGL 105
           V+  S  F DA  + + M+   I P + S   L+ A +K+G +A      +++++ ++GL
Sbjct: 3   VYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGL 62

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    N++++   +    +    V   M       D+ TYN +++++GR G  ++ E 
Sbjct: 63  RPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAEL 122

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +F+ L  K  +PD VT+ S L A++++    R   + EE++ AG   DG T   +I
Sbjct: 123 MFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMI 178



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 93/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  E+++ G+ P   ++  L++A S+  N+     V  +M  S  +PD +  N+M++
Sbjct: 50  ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 109

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++GR G+ ++ E +   + +  +  D  TYN L+  + + G +E++E + + L     + 
Sbjct: 110 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 169

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y +       L +++EM   GC PD  T  VL+ +    D+I +   ++
Sbjct: 170 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 229

Query: 238 RTM 240
             M
Sbjct: 230 EEM 232



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  V EEM   G+ PT+ +   L+ AY+K+G     E   ++M +SG+KPD      
Sbjct: 222 ISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLV 281

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK- 173
           ML+++ R  +  K+  +  AM K  Y  D   Y +L+    +G   +++EG+ Q + A  
Sbjct: 282 MLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVF 341

Query: 174 RLKPDVVT---WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            + P V++     +   +     L R CL+ +E        PD G  + L S  S
Sbjct: 342 EMNPLVISSILIKAECISQGASLLKRACLQGYE--------PDDGPDRQLASNMS 388



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 88/194 (45%), Gaps = 6/194 (3%)

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK--MEEVLTAMEKG 138
           +  Y+++G       +++ M    ++PD    N+++N   + G        E+L  + + 
Sbjct: 1   MGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQA 60

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               D  TYN LI+   +G  ++    +F+ + A   +PD+ T+ + ++ + R    +  
Sbjct: 61  GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEA 120

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN----L 254
             +F+E+++ G  PD  T   L+ A + E  +E+V  +   + K       I +N    +
Sbjct: 121 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 180

Query: 255 YGEKGVARSNLGQY 268
           YG+ G     LG Y
Sbjct: 181 YGKMGRLDLALGLY 194



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 35/184 (19%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EM+ +G TP   ++ +L+ +  K   +++   V+ +M  +GLKP T V      
Sbjct: 190 ALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKP-TLV------ 242

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                                       T++ LI  Y + G  +  E  F  +    +KP
Sbjct: 243 ----------------------------TFSALICAYAKSGRQDDAERTFDRMVESGVKP 274

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D + +   L  ++R    R+ + ++  MI  G  PD G  +VL++A +  ++ +++  ++
Sbjct: 275 DRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVI 334

Query: 238 RTMH 241
           + M 
Sbjct: 335 QDME 338


>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Brachypodium distachyon]
          Length = 502

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +  +M   GI P   ++  L+ AY K G  A+ E  + +M     KPD + +NS
Sbjct: 238 FDKVKDLLADMACGGIRPNTVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNS 297

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L  +G  GQ E ME      +    + +I TYNIL++ YG+    EKM  + + +    
Sbjct: 298 TLRAFGSSGQIEMMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYY 357

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
               +VT+   + A+ R     +   IF  M      P+  T   LI A    DQ++++ 
Sbjct: 358 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIE 417

Query: 235 TLVRTMHKDMKTALPIYFNL----YGEKG 259
           T++R +     T   ++FN     YG  G
Sbjct: 418 TVLRIIENSDTTLDIVFFNCLVDAYGRVG 446



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 96/190 (50%), Gaps = 9/190 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPD----TFVI 112
           AH +F+ M   G  P ++S+  L++AYS++G+  +   ++++M  + G +PD    + +I
Sbjct: 170 AHELFQAMVDEGCAPNLESYTALVSAYSRSGSFDRAFSLLDRMKATPGCRPDVQTYSILI 229

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            S L+ Y     F+K++++L  M  G    +  TYN L++ YG+ G   +ME     + +
Sbjct: 230 KSCLHAY----DFDKVKDLLADMACGGIRPNTVTYNTLVDAYGKAGRFAEMESTLLEMLS 285

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           ++ KPDV T  S L A+            +E+   +G  P+  T  +L+ +       E+
Sbjct: 286 EKCKPDVWTMNSTLRAFGSSGQIEMMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEK 345

Query: 233 VTTLVRTMHK 242
           +  ++  M K
Sbjct: 346 MGAVMEYMQK 355



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 69/125 (55%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AV E M++   + T+ ++ +++ A+ + G++ + E +   M    +KP+   + S++  Y
Sbjct: 348 AVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAY 407

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR  Q +K+E VL  +E      DI  +N L++ YGR G + +M  +   +  +R+ PD 
Sbjct: 408 GRADQVKKIETVLRIIENSDTTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDK 467

Query: 180 VTWTS 184
           VT T+
Sbjct: 468 VTCTT 472



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 70/163 (42%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            + +E+ +  GI+P +K++ +LL +Y K     K   V+  M K          N +++ 
Sbjct: 312 ESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDA 371

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           +GR G  E+ME +   M+      +  T   LI  YGR   ++K+E + + +       D
Sbjct: 372 FGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSDTTLD 431

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +V +   + AY R        ++   M      PD  T   +I
Sbjct: 432 IVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDKVTCTTMI 474



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 2/188 (1%)

Query: 50  IFSIYFSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           I ++ +  A  VFE M+ ++   P +  ++ L+T   K     K   +   M   G  P+
Sbjct: 126 IAALRWESALKVFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPN 185

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLF 167
                ++++ Y R G F++   +L  M+       D+ TY+ILI         +K++ L 
Sbjct: 186 LESYTALVSAYSRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLL 245

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             +    ++P+ VT+ + + AY +   +        EM+   C PD  T    + A  S 
Sbjct: 246 ADMACGGIRPNTVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSS 305

Query: 228 DQIEQVTT 235
            QIE + +
Sbjct: 306 GQIEMMES 313



 Score = 43.9 bits (102), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +  Y  LI + G+     K   LFQ++  +   P++ ++T+ ++AYSR   + R   + +
Sbjct: 151 VGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAYSRSGSFDRAFSLLD 210

Query: 204 EM-IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            M    GC PD  T  +LI +C      ++V  L+  M
Sbjct: 211 RMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADM 248


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A A FE++K  G  P + ++  LL  + K GN  +   V+ +M  SG +PD    N 
Sbjct: 176 LDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNE 235

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +   Y R G FE+  + L  M       +  TYN ++  Y   G +++   LF  +    
Sbjct: 236 LAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNG 295

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+        +K  +   LE+ EEM  +GC P+  T   +++ C      + VT
Sbjct: 296 YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVT 355

Query: 235 TLVRTM 240
            ++  M
Sbjct: 356 RVLNGM 361



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 36/227 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA----------------------- 91
           +S A ++  +M + G  P  +S+ LLL  Y+K GN A                       
Sbjct: 421 WSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRT 480

Query: 92  ------KC---EGV---INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                 KC   EGV     ++   G KPD  + NSML +Y + G + K  E+  ++++  
Sbjct: 481 LVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSG 540

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + D+ TYN L+++Y +     + E + + L + ++KPDVV++ + +  + ++ L +   
Sbjct: 541 LSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQ 600

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMK 245
            I  EMI  G  P   T   L+   +S +   +   +V  M H ++K
Sbjct: 601 RILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLK 647



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 4/195 (2%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L A S+ G   +   +  ++ + G+ P     N +L++YGR+G+ + ++  +L
Sbjct: 89  VRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALL 148

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I   GR G +++    F+ L A+   P VVT+ + L  + + 
Sbjct: 149 EEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKA 208

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
             Y   L + +EM D+GC PD  T   L    +     E+    + TM    K  LP  F
Sbjct: 209 GNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTS--KGLLPNTF 266

Query: 253 NLYGEKGVARSNLGQ 267
             Y     A +N+G+
Sbjct: 267 T-YNTVMTAYANVGR 280



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EM   G TP + ++  LL   S+ G+ +  + ++++M K+G KP+    + +L 
Sbjct: 389 AFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQ 448

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF----IEKMEGLFQSLPAK 173
            Y + G    +E +    EK  Y   I    +++       F    +E +E  FQ + A+
Sbjct: 449 CYAKGGNAAGIESI----EKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQ 504

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             KPD+V + S LA Y++  LY +  E+F+ +  +G  PD
Sbjct: 505 GYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPD 544



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 77/152 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F+E+K  G  P +     +L  Y+K G  +K   + + + +SGL PD    NS++++Y 
Sbjct: 497 AFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYA 556

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  +  + E++L  ++      D+ +YN +IN + + G I++ + +   + A  + P VV
Sbjct: 557 KSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVV 616

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           T+ + +  Y+  +++    E+   MI     P
Sbjct: 617 TYHTLVGGYASLEMFNEAREVVNYMIHHNLKP 648



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A  V +EM+  G  P   ++  L   Y++ G   +    ++ M   GL
Sbjct: 202 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGL 261

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+TF  N+++  Y  +G+ ++   +   M+K  Y  +++TYN++  + G+      M  
Sbjct: 262 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLE 321

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + + +      P+ VTW + LA   ++ +      +   M   G      T   LISA
Sbjct: 322 MLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISA 379



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 89/190 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F +A    + M   G+ P   ++  ++TAY+  G V +   + ++M K+G  P+    N
Sbjct: 245 FFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYN 304

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +  + G+  +F  M E+L  M +     +  T+N ++ + G+ G  + +  +   + + 
Sbjct: 305 LIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSC 364

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++    T+ + ++AY R        ++++EMI +G  P   T   L++  S +      
Sbjct: 365 GVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 424

Query: 234 TTLVRTMHKD 243
            ++V  M K+
Sbjct: 425 QSIVSKMLKN 434



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 85/173 (49%), Gaps = 7/173 (4%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + P+L +F  + ++Y     +S A  +F+ +K+ G++P + ++  L+  Y+K+    + E
Sbjct: 506 YKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAE 565

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ Q+  S +KPD    N+++N + + G  ++ + +L+ M     A  + TY+ L+  Y
Sbjct: 566 KILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGY 625

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
                  +   +   +    LKP  +T+   + +Y + K Y    E   E+ D
Sbjct: 626 ASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISD 678



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 7/185 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +  + + Y       +A A+F+ MK+ G  P + ++ L+     K         +
Sbjct: 263 PNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEM 322

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M +SG  P+    N+ML + G+ G  + +  VL  M+         TYN LI+ YGR
Sbjct: 323 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 382

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       ++  + +    P + T+ + L   SR+  +     I  +M+  G  P+  +
Sbjct: 383 CGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 442

Query: 217 AKVLI 221
             +L+
Sbjct: 443 YSLLL 447



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 5/152 (3%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           N +  IF +      F+    + EEM R G TP   +   +L    K G       V+N 
Sbjct: 301 NTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNG 360

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G++      N++++ YGR G      ++   M    +   ++TYN L+N+  R G 
Sbjct: 361 MKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGD 420

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
               + +   +     KP+  +++  L  Y++
Sbjct: 421 WSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAK 452


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 76/159 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF+EM+R  I P + +   L+ +  K G + +   V + M   G  PD F    
Sbjct: 307 WKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTI 366

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y   G    M ++   M     A DI T+N+LI  Y   G ++K   +F  +    
Sbjct: 367 MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 426

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +KP VVT+ + +AA  R       +E F +MID G  PD
Sbjct: 427 VKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 465



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 88/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM + GI P + ++  ++ A  K   + K E  + QM   G+ PD +  N+++ 
Sbjct: 240 ACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIY 299

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ+++   V   M + S   D+   N L+    + G I++   +F ++  K   P
Sbjct: 300 GYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNP 359

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++T  L  Y+ K       ++F+ M+  G  PD  T  VLI A ++   +++   + 
Sbjct: 360 DVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIF 419

Query: 238 RTMH 241
             M 
Sbjct: 420 NEMR 423



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 4/184 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   +M   G+ P   ++  L+  YS TG   +   V  +M +  + PD   +N+++ 
Sbjct: 275 AEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMG 334

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  +V   M       D+ +Y I++N Y   G +  M  LF  +    + P
Sbjct: 335 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 394

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
           D+ T+   + AY+   +  + + IF EM D G  P   T   +I+A       +D +E+ 
Sbjct: 395 DIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 454

Query: 234 TTLV 237
             ++
Sbjct: 455 NQMI 458



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+  G+ P + ++M ++ A  + G +       NQM   G+ PD +  + ++ 
Sbjct: 415 AMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQ 474

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G   K +E+++ +       DI  +  +IN   + G +   + +F       L P
Sbjct: 475 GFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHP 534

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V +   +  Y       + L +F+ M+ AG  P+      L++      +I++  +L 
Sbjct: 535 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 594

Query: 238 RTM-HKDMKTALPIY 251
           R M  K +K +  +Y
Sbjct: 595 REMLQKGIKPSTILY 609



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 74/157 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F +M   G+ P   ++  L+  +   G++ K + +I+++  +G++ D     S+
Sbjct: 448 DDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSI 507

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +LG+    + +           D   YN+L++ Y   G +EK   +F ++ +  +
Sbjct: 508 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGI 567

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +P+VV + + +  Y +       L +F EM+  G  P
Sbjct: 568 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 82/184 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M   GI P +  +  L+  Y K G + +   +  +M + G+KP T + N +++
Sbjct: 555 ALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIID 614

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+    +     M +   A +  TY+I++    +    ++   LF+ L A  +K 
Sbjct: 615 GLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI 674

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++T  + +A   + +      ++F  +  +G  P   T  ++I+    E  +E+   + 
Sbjct: 675 DIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMF 734

Query: 238 RTMH 241
            +M 
Sbjct: 735 SSMQ 738



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 79/173 (45%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           +P + ++  ++  + K G+V K   +  +M + G+ PD    +S+++   +    +K E 
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
            L  M       D  TYN LI  Y   G  ++   +F+ +  + + PDVV   + + +  
Sbjct: 278 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLC 337

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           +    +   ++F+ M   G  PD  +  ++++  +++  +  +T L   M  D
Sbjct: 338 KYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGD 390



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 40/218 (18%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----------------------- 106
           ++PT  ++ +L+   ++            Q+ ++GL+                       
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 107 -------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY--AADISTYNILI 151
                        PD F  N +L      G+  + +++L  M +G    + D+  YN +I
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVI 228

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           + + + G + K   LF+ +  + + PD+VT++S + A  + +   +      +M++ G  
Sbjct: 229 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 288

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           PD  T   LI   SS  Q ++   + + M +  ++ LP
Sbjct: 289 PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR--QSILP 324



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 67/158 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +F+ M   GI P + +  +L+ AY+  G + K   + N+M   G+KP      +++
Sbjct: 379 DMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVI 438

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R+G+ +   E    M       D   Y+ LI  +   G + K + L   +    ++
Sbjct: 439 AALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMR 498

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            D+V + S +    +         IF+  ++ G +PD 
Sbjct: 499 LDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536



 Score = 40.8 bits (94), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F EM   GI     ++ ++L    K     +   +  ++    +K D   +N+M+ 
Sbjct: 625 AKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIA 684

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + E+ +++  ++ +        TY+I+I    + G +E+ E +F S+     +P
Sbjct: 685 GMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEP 744

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           D     SRL  +  ++L ++      E++ AG Y
Sbjct: 745 D-----SRLLNHVVRELLKK-----NEIVRAGAY 768


>gi|225456802|ref|XP_002275673.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic [Vitis vinifera]
 gi|147821419|emb|CAN76897.1| hypothetical protein VITISV_010606 [Vitis vinifera]
          Length = 692

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 94/183 (51%), Gaps = 2/183 (1%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H+    +  +S+  +   A+  FE MKR GI P+++++  LL A+ + G+      +   
Sbjct: 455 HSYTALIHAYSVGGWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKL 514

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M    ++      N +L+ + + G + +  +V+    K  +   + TYN+L+N Y RGG 
Sbjct: 515 MLSDKIEGTRVTFNILLDGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQ 574

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             ++  L + + +  LKPD +T+++ + AY R + ++R     ++M+ +G  PD  + + 
Sbjct: 575 HSRLPQLLKEMTSLNLKPDSITYSTMIYAYVRVRDFKRAFFYHKQMVKSGQVPDPQSYQK 634

Query: 220 LIS 222
           L S
Sbjct: 635 LRS 637



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 1/200 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +  EM++ GI+     +  L+ AYSK+  V + EG+  +M   G+ P +   N +
Sbjct: 330 NEALIIQSEMEKKGISSNAIVYNTLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNIL 389

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKR 174
           ++ Y R  Q E +E +L  M+      ++ +Y  LI+ YGR   +  M    F  +    
Sbjct: 390 MDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVG 449

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP   ++T+ + AYS    + +    FE M   G  P   T   L+ A       + + 
Sbjct: 450 IKPTSHSYTALIHAYSVGGWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLM 509

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            + + M  D      + FN+
Sbjct: 510 KIWKLMLSDKIEGTRVTFNI 529



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 2/200 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA   F+ M R G+  +++    L+ ++   G   +   + ++M K G+  +  V N+++
Sbjct: 296 DAWEFFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLM 355

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +  + E+ E +   M+        +TYNIL++ Y R    E +E L   +    L+
Sbjct: 356 DAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDMGLE 415

Query: 177 PDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           P+V ++T  ++AY R KK+     + F  M   G  P   +   LI A S     E+  T
Sbjct: 416 PNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKAYT 475

Query: 236 LVRTMHKD-MKTALPIYFNL 254
               M ++ +K ++  Y  L
Sbjct: 476 AFENMKREGIKPSIETYTAL 495



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 85/178 (47%), Gaps = 1/178 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EM+ +G+ P +KS+  L++AY +   ++        +M K G+KP +    ++++ Y   
Sbjct: 408 EMQDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVG 467

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  EK       M++      I TY  L++ + R G  + +  +++ + + +++   VT+
Sbjct: 468 GWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTF 527

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              L  ++++  Y    ++  E    G  P   T  +L++A +   Q  ++  L++ M
Sbjct: 528 NILLDGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEM 585



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 51/100 (51%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++ +A  V  E  ++G  PT+ ++ +L+ AY++ G  ++   ++ +M    LKPD+   +
Sbjct: 539 HYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKPDSITYS 598

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M+  Y R+  F++       M K     D  +Y  L +I
Sbjct: 599 TMIYAYVRVRDFKRAFFYHKQMVKSGQVPDPQSYQKLRSI 638


>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
 gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
 gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
          Length = 511

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 91/199 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     + E+M R GI P + ++  L+ AY K G  A+ E  + +M     KPD + +NS
Sbjct: 247 FERVKYLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNS 306

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L  +G  GQ E ME      +    + +I TYNIL++ YG+    EKM  + + +    
Sbjct: 307 TLRAFGGSGQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYY 366

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
               +VT+   + A+ R     +   IF  M      P+  T   L+ A      ++++ 
Sbjct: 367 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIK 426

Query: 235 TLVRTMHKDMKTALPIYFN 253
           T++R +     T   ++FN
Sbjct: 427 TVLRIVENSDITLDIVFFN 445



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPD----TFVI 112
           AH +F+ M   G  P ++S+  L++AYS++G   +   ++ QM  + G +PD    + +I
Sbjct: 179 AHELFQAMVDEGCAPNLESYTALVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILI 238

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            S L+ Y     FE+++ ++  M +     ++ TYN LI+ YG+ G   +ME     +  
Sbjct: 239 KSCLHAY----DFERVKYLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLT 294

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +  KPDV T  S L A+            +E+   +G  P+  T  +L+ +       E+
Sbjct: 295 ENCKPDVWTMNSTLRAFGGSGQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEK 354

Query: 233 VTTLVRTMHK 242
           +  ++  M K
Sbjct: 355 MGAVMEYMQK 364



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 8/209 (3%)

Query: 43  TPNL--FVFIFSIY-----FSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCE 94
            PNL  +  + S Y     F  A ++ E+MK   G  P ++++ +L+ +     +  + +
Sbjct: 192 APNLESYTALVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVK 251

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++  M ++G++P+    N++++ YG+ G+F +ME  L  M   +   D+ T N  +  +
Sbjct: 252 YLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAF 311

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           G  G IE ME  ++   A  + P++ T+   L +Y + K+Y +   + E M         
Sbjct: 312 GGSGQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTI 371

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            T  V+I A      +EQ+  + R M  +
Sbjct: 372 VTYNVVIDAFGRAGDLEQMEYIFRLMKSE 400



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 69/125 (55%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AV E M++   + T+ ++ +++ A+ + G++ + E +   M    +KP+   + S++  Y
Sbjct: 357 AVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAY 416

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR G  +K++ VL  +E      DI  +N L++ +GR G + +M  +   +  +R KPD 
Sbjct: 417 GRAGDVKKIKTVLRIVENSDITLDIVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDK 476

Query: 180 VTWTS 184
           VT T+
Sbjct: 477 VTCTT 481



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 74/163 (45%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            + +E+ +  GI+P +K++ +LL +Y K     K   V+  M K          N +++ 
Sbjct: 321 ESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDA 380

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           +GR G  E+ME +   M+      +  T   L+  YGR G ++K++ + + +    +  D
Sbjct: 381 FGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIVENSDITLD 440

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +V +   + A+ R        ++ + M    C PD  T   +I
Sbjct: 441 IVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDKVTCTTMI 483



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 2/188 (1%)

Query: 50  IFSIYFSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           I ++ +  A  VF+ M+ ++   P +  ++ L+T   K     +   +   M   G  P+
Sbjct: 135 ITALRWDSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPN 194

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLF 167
                ++++ Y R G+F++   +L  M+       D+ TY+ILI         E+++ L 
Sbjct: 195 LESYTALVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLM 254

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +    ++P+VVT+ + + AY +   +        EM+   C PD  T    + A    
Sbjct: 255 EDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGS 314

Query: 228 DQIEQVTT 235
            QIE + +
Sbjct: 315 GQIETMES 322



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y   +  Y  LI + G+    E+   LFQ++  +   P++ ++T+ ++AYSR   + R  
Sbjct: 156 YRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVSAYSRSGRFDRAF 215

Query: 200 EIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + E+M    GC PD  T  +LI +C      E+V  L+  M +
Sbjct: 216 SLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMAR 259


>gi|242094172|ref|XP_002437576.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
 gi|241915799|gb|EER88943.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
          Length = 429

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 99/200 (49%), Gaps = 4/200 (2%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +M   G+    +++ LLL AY++ G +     V+ +M + G++ DT   + ++ LY   G
Sbjct: 70  QMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRRGIRLDTAGYSMLVRLYRDNG 129

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            ++K  +++  M++     D+  Y+ LI+ +G+ G +     +F  + A+ +KPD+ TW 
Sbjct: 130 MWKKAIDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKMRAEGIKPDISTWN 189

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-- 241
           + +  + R    +R L  F  M + G YPD     ++IS    + + +++  L   M   
Sbjct: 190 ALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMKNR 249

Query: 242 --KDMKTALPIYFNLYGEKG 259
             K+      +  ++YG+ G
Sbjct: 250 GFKESGAVYAVLVDIYGQYG 269



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 5/185 (2%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +FV I S       + +   +F+ MK  G   +   + +L+  Y + G+       I 
Sbjct: 220 PKIFVMIISRLGEQGKWDEIKKLFDGMKNRGFKESGAVYAVLVDIYGQYGHFRDARECIA 279

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +    ++    V   + N Y + G  E+   VL  ME+  +  ++   N+LIN +G  G
Sbjct: 280 ALRAENMQLSPRVFCVLANAYAQQGLCEQTVNVLQLMEEEGFEPNLVMLNLLINAFGTAG 339

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   +FQ +    + PDVVT+T+ +  + R K + +  E++ EM  AGC PD    +
Sbjct: 340 RHLEALAVFQHIKDSGMSPDVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCTPDRKARE 399

Query: 219 VLISA 223
           +L  A
Sbjct: 400 MLHDA 404



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 35/223 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  VF++M+  GI P + +   L+  + + GN+ +       M + G+ PD  +   
Sbjct: 166 LADARRVFDKMRAEGIKPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVM 225

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG------------------- 155
           +++  G  G++++++++   M+   +    + Y +L++IYG                   
Sbjct: 226 IISRLGEQGKWDEIKKLFDGMKNRGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAEN 285

Query: 156 ----------------RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                           + G  E+   + Q +  +  +P++V     + A+     +   L
Sbjct: 286 MQLSPRVFCVLANAYAQQGLCEQTVNVLQLMEEEGFEPNLVMLNLLINAFGTAGRHLEAL 345

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +F+ + D+G  PD  T   L+       + E+V+ + R M +
Sbjct: 346 AVFQHIKDSGMSPDVVTYTTLMKTFMRAKKFEKVSEVYREMER 388



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 4/210 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D+  V  EM+R GI      + +L+  Y   G   K   ++ +M + G++ D  + + 
Sbjct: 96  LEDSWWVLGEMRRRGIRLDTAGYSMLVRLYRDNGMWKKAIDLVMEMQEVGVELDVKIYSG 155

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ GQ      V   M       DIST+N LI  + R G +++    F S+  + 
Sbjct: 156 LIDTFGKYGQLADARRVFDKMRAEGIKPDISTWNALIQWHCRVGNMKRALRFFTSMQEEG 215

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD   +   ++    +  +    ++F+ M + G    G    VL+             
Sbjct: 216 MYPDPKIFVMIISRLGEQGKWDEIKKLFDGMKNRGFKESGAVYAVLVDIYGQYGHFRDAR 275

Query: 235 TLVRTMHKDMKTALPIYF----NLYGEKGV 260
             +  +  +     P  F    N Y ++G+
Sbjct: 276 ECIAALRAENMQLSPRVFCVLANAYAQQGL 305



 Score = 43.9 bits (102), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 66/149 (44%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  G  P+  ++  L+ A S+ G   + E ++ +M + G +PD    N++L        
Sbjct: 1   MQASGGRPSSGAYARLIRALSRAGRALEAEALLLEMRRHGPRPDAAHYNALLEGLLAAAH 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
               + +L  M     A +  TY +L+  Y R G +E    +   +  + ++ D   ++ 
Sbjct: 61  LRLADRLLLQMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRRGIRLDTAGYSM 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +  Y    ++++ +++  EM + G   D
Sbjct: 121 LVRLYRDNGMWKKAIDLVMEMQEVGVELD 149


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 95/190 (50%), Gaps = 4/190 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+EMK+ G+ P   +   ++  YS++G V +  G+ + M +  L  D  V N+++ 
Sbjct: 202 ALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQD-LACDIIVYNAVIK 260

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +    G   + E+ L  M +  +  +  TY  +I++Y + G   + + +F  L     +P
Sbjct: 261 MCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQLVEAGYQP 320

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV---LISACSSEDQIEQVT 234
           DV+++TS L  Y   K Y +  EI  EM+ A C PD     V   L+ AC ++ + E + 
Sbjct: 321 DVMSYTSLLQGYGNAKDYEKVQEILHEMVSANCAPDERLWCVILNLLDACDTDVEFEILR 380

Query: 235 TLVRTMHKDM 244
           + +R  +  M
Sbjct: 381 SCLRMCNPTM 390



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/227 (18%), Positives = 104/227 (45%), Gaps = 9/227 (3%)

Query: 34  LINFLLLQHTPNLFVFIFSIY---------FSDAHAVFEEMKRLGITPTMKSHMLLLTAY 84
           L  +L  +   NL ++ +++          +  +  + E+M   GI P   ++  L++  
Sbjct: 29  LFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNITYSTLISCA 88

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
           ++           ++MH +   PD    ++M+++YG++G++++   +  +++K  +  D 
Sbjct: 89  NRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDK 148

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
            TY  ++ ++GR G+I     +F  +    ++P  V +   ++   R       L++F+E
Sbjct: 149 VTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISCLGRAGRMGHALKVFQE 208

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY 251
           M  AG  P+  T   ++   S   ++ +   +   M +D+   + +Y
Sbjct: 209 MKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQDLACDIIVY 255



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 84/213 (39%), Gaps = 7/213 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A A F+ M      P   ++  ++  Y K G   +   +   + KSG KPD     
Sbjct: 93  YQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYG 152

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M+ L+GR G       +   M+          YNI+I+  GR G +     +FQ +   
Sbjct: 153 TMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQA 212

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQ 232
            +KP+ VT ++ +  YSR       L IF  M  D  C  D      +I  C     + +
Sbjct: 213 GVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQDLAC--DIIVYNAVIKMCREAGLVPE 270

Query: 233 VTTLVRTM----HKDMKTALPIYFNLYGEKGVA 261
               +R M    H+          +LY + G+A
Sbjct: 271 AEQYLREMVEYGHQPNDWTYRNMISLYAKNGMA 303



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 50/97 (51%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A     EM   G  P   ++  +++ Y+K G   + + + +Q+ ++G +PD     S+L
Sbjct: 270 EAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLL 329

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             YG    +EK++E+L  M   + A D   + +++N+
Sbjct: 330 QGYGNAKDYEKVQEILHEMVSANCAPDERLWCVILNL 366


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 4/218 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA AVFEEM      P + ++  +++ + + G     E +  ++ + G KPD    NS
Sbjct: 151 LDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNS 210

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + + G  + +E V   + +  +  D  TYN +I++YG+ G ++   GL+  + A  
Sbjct: 211 LLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALG 270

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQI 230
             PD VT+T  + +  +        ++ EEM DAG  P   T   LI A +     E+ +
Sbjct: 271 CTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAV 330

Query: 231 EQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY 268
              + +V +  K  + A  +  ++    G  R  +  Y
Sbjct: 331 RTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALY 368



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F E+   G  P   ++  LL A++K G+    E V  ++ ++G K D    N+M+
Sbjct: 188 DAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMI 247

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++YG++G+ +    +   M       D  TY +LI+  G+   I     + + +    LK
Sbjct: 248 HMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLK 307

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +VT+++ + AY++       +  F  M+ +G  PD     V++   +    + ++  L
Sbjct: 308 PTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMAL 367

Query: 237 VRTMHKD 243
            +TM  D
Sbjct: 368 YQTMMND 374



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 89/177 (50%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           E++++G+ P + ++  L++A S+  N+     V  +M  S  +PD +  N+M++++GR G
Sbjct: 125 EVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCG 184

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           + +  E +   + +  +  D  TYN L+  + + G  + +E + + L     K D +T+ 
Sbjct: 185 KAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYN 244

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + +  Y +       L +++EM   GC PD  T  VLI +    D+I     ++  M
Sbjct: 245 TMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEM 301



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 2/176 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG--VINQMHKSGL 105
           V+  S  F D   + + M+   + P + S   L+ A +K+G +A      ++ ++ + GL
Sbjct: 72  VYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLLLEVRQVGL 131

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    N++++   +    +    V   M       D+ TYN +++++GR G  +  E 
Sbjct: 132 RPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAER 191

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +F+ L  K  KPD VT+ S L A++++        + EE++ AG   DG T   +I
Sbjct: 192 MFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMI 247



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 94/195 (48%), Gaps = 3/195 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
             I      + + + +E++ +G   +  + +L+L A++K G++ +   + N M ++G  P
Sbjct: 668 ALIIDGRLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLP 727

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +  +  SM++L  R  ++  +E ++  ME+  +  D++  N L+ +Y   G  +K   ++
Sbjct: 728 NMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVY 787

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
            S+    L+P+  T+ + +  YSR         +  EM   G  P   + K L++A    
Sbjct: 788 HSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKA 847

Query: 228 ---DQIEQVTTLVRT 239
              +Q EQ+   +R+
Sbjct: 848 KLWEQAEQLFEEIRS 862



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 75/149 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++  MK  G  P M  +  +++   +       E ++ +M ++G +PD  ++N++L +Y 
Sbjct: 716 IYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYT 775

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G F+K  EV  ++ +     +  TYN LI +Y R    E+   L   +  K L P + 
Sbjct: 776 GNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLE 835

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           ++ S LAA  + KL+ +  ++FEE+   G
Sbjct: 836 SYKSLLAASGKAKLWEQAEQLFEEIRSKG 864



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 17/182 (9%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EM+ LG TP   ++ +L+ +  K   ++    V+ +M  +GLKP     ++++ 
Sbjct: 259 ALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALIC 318

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+ E+     + M       D   Y ++++I  R G + K+  L+Q++     +P
Sbjct: 319 AYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRP 378

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM---------------IDAGCYPDGGTAKVLIS 222
           D   +   LAA ++   Y     + ++M               I A C   G  AK+L  
Sbjct: 379 DNALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQLVSSILIKAECISQG--AKLLKK 436

Query: 223 AC 224
           AC
Sbjct: 437 AC 438



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 6/195 (3%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME--EVLTAMEK 137
           ++  Y+++G       +++ M    L+PD    N+++N   + G        ++L  + +
Sbjct: 69  MMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLLLEVRQ 128

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                D+ TYN LI+   +G  ++    +F+ + A   +PD+ T+ + ++ + R    + 
Sbjct: 129 VGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQD 188

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQV-TTLVRTMHKDMKTALPIYFN 253
              +F E+++ G  PD  T   L+ A + E   D +E+V   LVR   K          +
Sbjct: 189 AERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIH 248

Query: 254 LYGEKGVARSNLGQY 268
           +YG+ G     LG Y
Sbjct: 249 MYGKMGRLDLALGLY 263



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA  V EEM   G+ PT+ +   L+ AY+K G   +     + M  SG+KPD      
Sbjct: 291 ISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLV 350

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK- 173
           ML++  R G   K+  +   M    Y  D + Y +++    +G   +++E + Q +    
Sbjct: 351 MLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVVC 410

Query: 174 RLKPDVVT 181
           ++ P +V+
Sbjct: 411 QMNPQLVS 418



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 92/209 (44%), Gaps = 1/209 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AVF+ M   G  PT+ S   ++ A    G + +   ++ ++   G K     +  
Sbjct: 640 YEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVIL 699

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+ + + G   ++ ++   M++  Y  ++  Y  +I++  R      +E +   +    
Sbjct: 700 MLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAG 759

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PD+    + L  Y+    + + +E++  +++AG  P+  T   LI   S   + E+  
Sbjct: 760 FEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGF 819

Query: 235 TLVRTM-HKDMKTALPIYFNLYGEKGVAR 262
           TL+  M  K +   L  Y +L    G A+
Sbjct: 820 TLLNEMGKKGLTPKLESYKSLLAASGKAK 848



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 95/210 (45%), Gaps = 6/210 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D   +  EM+R G  P +     LL  Y+  GN  K   V + + ++GL+P+    N+
Sbjct: 745 YRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNT 804

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +Y R  + E+   +L  M K      + +Y  L+   G+    E+ E LF+ + +K 
Sbjct: 805 LIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKG 864

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIE 231
            + +   +   +  Y     + +  ++   M + G  P   T  +L+++  +    D+ E
Sbjct: 865 YRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAE 924

Query: 232 QVTTLVRTMHKDMKTALP--IYFNLYGEKG 259
           +V   +++   ++ T LP    FN Y + G
Sbjct: 925 KVLNSLKSSSLEVST-LPYSTVFNAYLKNG 953



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 82/190 (43%), Gaps = 2/190 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F +A  VF +M+ +GI P+ K +  +++AY K G       ++++  +SG+  +     
Sbjct: 534 FFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLMDEAVQSGISLNILSSR 593

Query: 114 -SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            +M+  YG++  ++  E  +  + K   + D   +N LI+ Y   G  E    +F  +  
Sbjct: 594 VTMIEAYGKIKLWQHAENFVKGL-KQEPSIDRRIWNALIHAYAESGLYEHARAVFDIMIE 652

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           K   P + +    + A            I +E+ D G      T  +++ A +    I +
Sbjct: 653 KGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFE 712

Query: 233 VTTLVRTMHK 242
           V  +   M +
Sbjct: 713 VMKIYNGMKE 722



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR--RC 198
            A +  +N ++ +Y R G  + +  L  ++  + L+PD+V++ + + A ++         
Sbjct: 60  GATVQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSA 119

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            ++  E+   G  PD  T   LISACS    ++    +   M
Sbjct: 120 FDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEM 161



 Score = 43.5 bits (101), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 73/163 (44%), Gaps = 2/163 (1%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT-AMEKG 138
           L+T   +     +   V + M   G++P   +  SM++ Y +LG  E   +++  A++ G
Sbjct: 525 LITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLMDEAVQSG 584

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                +S+   +I  YG+    +  E   + L  +    D   W + + AY+   LY   
Sbjct: 585 ISLNILSSRVTMIEAYGKIKLWQHAENFVKGLK-QEPSIDRRIWNALIHAYAESGLYEHA 643

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             +F+ MI+ G  P   +   ++ A   + +++++  +V+ + 
Sbjct: 644 RAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQ 686



 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +L+  +  IY      S A  +   MK  GI PT+ +  +L+T+Y   G+  + E V+N 
Sbjct: 870 SLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAEKVLNS 929

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQF 125
           +  S L+  T   +++ N Y + G +
Sbjct: 930 LKSSSLEVSTLPYSTVFNAYLKNGDY 955



 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 61/134 (45%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AY+++G       V + M + G  P    +N M+      G+ +++  ++  ++   
Sbjct: 630 LIHAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMG 689

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +    ST  ++++ + + G I ++  ++  +      P++  + S ++   R K YR   
Sbjct: 690 FKISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVE 749

Query: 200 EIFEEMIDAGCYPD 213
            +  EM  AG  PD
Sbjct: 750 LMVVEMERAGFEPD 763


>gi|357450749|ref|XP_003595651.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484699|gb|AES65902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 8/193 (4%)

Query: 44  PNLFVFIFSIYFSDAHAVFEEMKRL-------GITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +   +       +F++++RL       G+   + ++  ++ +Y K  +       
Sbjct: 578 PNTFTYNVMLNVFGKAKLFKKVRRLYFMAKKQGLVDVI-TYNTIIDSYGKKKDFRNMSRT 636

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M   G        NSML+ YG+  Q +    VL  M++ + A+D+ TYNI+INIYG 
Sbjct: 637 VRKMQFDGFSVSLEAYNSMLDAYGKDSQMDAFRSVLKMMKESNCASDLYTYNIVINIYGE 696

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G+IE++  +   L    L+PD+ ++ + + AY    +    +E+ +EM   G  PD  T
Sbjct: 697 QGWIEEVSDVLAELNECGLRPDLCSYNTLIKAYGIAGMVEEAVELIKEMRKNGIEPDQTT 756

Query: 217 AKVLISACSSEDQ 229
              LI+A    D+
Sbjct: 757 YTNLINALKRNDK 769



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 11/207 (5%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+  F  +  +Y       +A  V   MKR  +     ++  ++T Y++ G  AK E 
Sbjct: 117 TPNVATFGMLMRLYQKNWNVEEAEFVMSHMKRFSVVCE-SAYSSMITIYTRLGLYAKAES 175

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--GSYAADISTYNILINI 153
           V+  M K  +  +      +LNLY + G+  + E VL  ME+  G    +I  YN +I  
Sbjct: 176 VVELMEKEVMVLNVENWLVILNLYCQQGKMVEAERVLAIMEEEAGFCVENIVVYNTMITG 235

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+   ++  E +F  L   R++PD  ++ S +  + R   Y +    +EE+   G  P 
Sbjct: 236 YGKASNMDGAESVFLRLGG-RIEPDETSYRSMIEGWGRAGNYEKARWYYEELKRLGFKPS 294

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTM 240
                 +I   ++ED ++ V   +  M
Sbjct: 295 SSNLFTMIKLQANEDDLDGVVGTLDDM 321



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 78/183 (42%), Gaps = 1/183 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM + G  P   ++ ++L  + K     K   +     K GL  D    N++++ YG
Sbjct: 567 LFDEMLQRGFMPNTFTYNVMLNVFGKAKLFKKVRRLYFMAKKQGL-VDVITYNTIIDSYG 625

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +   F  M   +  M+   ++  +  YN +++ YG+   ++    + + +       D+ 
Sbjct: 626 KKKDFRNMSRTVRKMQFDGFSVSLEAYNSMLDAYGKDSQMDAFRSVLKMMKESNCASDLY 685

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  Y  +       ++  E+ + G  PD  +   LI A      +E+   L++ M
Sbjct: 686 TYNIVINIYGEQGWIEEVSDVLAELNECGLRPDLCSYNTLIKAYGIAGMVEEAVELIKEM 745

Query: 241 HKD 243
            K+
Sbjct: 746 RKN 748



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 8/211 (3%)

Query: 39  LLQHTPNLFVFIFSIY--FSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKC 93
           L +H     + I+S+   F DA  ++ ++K+   +P    M ++ +++  Y + G++   
Sbjct: 435 LNKHIVCTMIDIYSVMGCFKDAEMLYLKLKK-SSSPNSLDMIAYSIVVRMYVRAGSLEDA 493

Query: 94  EGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
             V++ + K   + PD F++  ML +Y R    +K+ +V   + K     D   YN +IN
Sbjct: 494 CSVLDDIDKRPDIVPDVFLLRDMLRIYQRRNMVDKLAQVYYKILKDRLNWDQEFYNCVIN 553

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              R   I+++  LF  +  +   P+  T+   L  + + KL+++   ++      G   
Sbjct: 554 CCARALPIDELSRLFDEMLQRGFMPNTFTYNVMLNVFGKAKLFKKVRRLYFMAKKQGLV- 612

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           D  T   +I +   +     ++  VR M  D
Sbjct: 613 DVITYNTIIDSYGKKKDFRNMSRTVRKMQFD 643



 Score = 41.6 bits (96), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +T N+ + I+    +  +   V  E+   G+ P + S+  L+ AY   G V +   +I +
Sbjct: 685 YTYNIVINIYGEQGWIEEVSDVLAELNECGLRPDLCSYNTLIKAYGIAGMVEEAVELIKE 744

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQF 125
           M K+G++PD     +++N   R  +F
Sbjct: 745 MRKNGIEPDQTTYTNLINALKRNDKF 770


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 91/169 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F EM+ LGI     S+  LL+ Y+K G   +   ++ +M   G+K D    N+
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  YG+ G+++++++V T M++     ++ TY+ LI+ Y +GG  ++   +F+   +  
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAG 544

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L+ DVV +++ + A  +  L    + + +EM   G  P+  T   +I A
Sbjct: 545 LRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA 593



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 92/186 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M    I P + S+  ++  ++K G   +   +  +M   G+  D    N++L+
Sbjct: 393 AFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLS 452

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y ++G+ E+  ++L  M       D+ TYN L+  YG+ G  ++++ +F  +  + + P
Sbjct: 453 IYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLP 512

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+++ +  YS+  LY+  +EIF E   AG   D      LI A      +    +L+
Sbjct: 513 NLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLI 572

Query: 238 RTMHKD 243
             M K+
Sbjct: 573 DEMTKE 578



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 11/211 (5%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG----NVAKCEGVINQMHKSGLKPDTFVI 112
           +A +VF  MK  G+ P + ++  ++ A  K G     VAK     ++M ++G++PD    
Sbjct: 286 EAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAK---FFDEMQRNGVQPDRITF 342

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           NS+L +  R G +E    +   M       D+ +YN L++   +GG ++    +   +P 
Sbjct: 343 NSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPV 402

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           KR+ P+VV++++ +  +++   +   L +F EM   G   D  +   L+S  +   + E+
Sbjct: 403 KRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEE 462

Query: 233 VTTLVRTMHK-DMKTALPIYFNL---YGEKG 259
              ++R M    +K  +  Y  L   YG++G
Sbjct: 463 ALDILREMASVGIKKDVVTYNALLGGYGKQG 493



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 1/149 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE     G   T+ +   L++AY ++G   +   V N M + GL+P+    N++++
Sbjct: 252 AKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVID 311

Query: 118 LYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             G+ G +F+++ +    M++     D  T+N L+ +  RGG  E    LF  +  +R++
Sbjct: 312 ACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIE 371

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            DV ++ + L A  +        EI  +M
Sbjct: 372 QDVFSYNTLLDAICKGGQMDLAFEILAQM 400



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F      F+EM+R G+ P   +   LL   S+ G       + ++M    ++ D F  N+
Sbjct: 320 FKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNT 379

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   + GQ +   E+L  M       ++ +Y+ +I+ + + G  ++   LF  +    
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG 439

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +  D V++ + L+ Y++       L+I  EM   G   D  T   L+     + + ++V 
Sbjct: 440 IALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVK 499

Query: 235 TLVRTMHKD 243
            +   M ++
Sbjct: 500 KVFTEMKRE 508



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM    I   + S+  LL A  K G +     ++ QM    + P+    +++++
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVID 417

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+F++   +   M     A D  +YN L++IY + G  E+   + + + +  +K 
Sbjct: 418 GFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKK 477

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           DVVT+ + L  Y ++  Y    ++F EM      P+  T   LI   S
Sbjct: 478 DVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYS 525



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 1/153 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++   + G V   + +       G     +  +++++ YGR G  E+   V  +M++  
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298

Query: 140 YAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
              ++ TYN +I+  G+GG   +++   F  +    ++PD +T+ S LA  SR  L+   
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAA 358

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             +F+EM +     D  +   L+ A     Q++
Sbjct: 359 RNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMD 391



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           + ++M++  GR G+    + +      G Y   +  ++ LI+ YGR G  E+   +F S+
Sbjct: 235 LASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSM 294

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
               L+P++VT+ + + A  +  + +++  + F+EM   G  PD  T   L++ CS    
Sbjct: 295 KEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGL 354

Query: 230 IEQVTTLVRTM 240
            E    L   M
Sbjct: 355 WEAARNLFDEM 365



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 21/208 (10%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +   VF EMKR  + P + ++  L+  YSK G   +   +  +   +GL+ D  + ++
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSA 554

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ--SLPA 172
           +++   + G       ++  M K   + ++ TYN +I+ +GR   +++        SLP 
Sbjct: 555 LIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPF 614

Query: 173 KRLKPDVVTWT---------SRLAAYSRKKLYRRC----------LEIFEEMIDAGCYPD 213
                  +T T          +L   S  +  + C          LE+F +M      P+
Sbjct: 615 SSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPN 674

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMH 241
             T   +++ACS  +  E  + L+  + 
Sbjct: 675 VVTFSAILNACSRCNSFEDASMLLEELR 702


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 36/225 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV-AKCEGVINQMHKSGLK------- 106
           +  A  +FE MK +G +PT+ ++ ++L  + K G    K  GV+++M   GLK       
Sbjct: 226 YEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCS 285

Query: 107 ----------------------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
                                       P T   N++L ++G+ G + +   VL  ME+ 
Sbjct: 286 TVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEEN 345

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           S  AD  TYN L+  Y R GF ++  G+ + +  K + P+ +T+T+ + AY +       
Sbjct: 346 SCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEA 405

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           L++F  M +AGC P+  T   ++S    + +  ++  ++  M  +
Sbjct: 406 LKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN 450



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 35/218 (16%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH------------------- 101
           V  +MK  G  PT  S+ L+L  Y+K GN    E + N++                    
Sbjct: 548 VISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANF 607

Query: 102 ----------------KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
                           K G KPD  + NSML+++ R   +++ E +L ++ +   + D+ 
Sbjct: 608 KCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLV 667

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN L+++Y R G   K E + ++L   +LKPD+V++ + +  + R+ L +  + +  EM
Sbjct: 668 TYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM 727

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            + G  P   T    +S  ++     ++  ++  M K+
Sbjct: 728 TERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKN 765



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + +   F   K+ G  P M     +L+ +++     + EG++  + + GL PD    NS
Sbjct: 612 LAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNS 671

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y R G+  K EE+L  +EK     D+ +YN +I  + R G +++   +   +  + 
Sbjct: 672 LMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERG 731

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P + T+ + ++ Y+   ++    ++ E M    C P+  T K+++  
Sbjct: 732 IRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDG 780



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 4/222 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A +V +EM+         ++  L+ AY + G   +  GVI  M K G+
Sbjct: 323 LQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGV 382

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+     ++++ YG+ G+ ++  ++  +M++     +  TYN ++++ G+     +M  
Sbjct: 383 MPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIK 442

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +   + +    P+  TW + LA    K + +    +F EM   G  PD  T   LISA  
Sbjct: 443 MLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYG 502

Query: 224 -CSSE-DQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARS 263
            C SE D  +    + R       T      N    KG  RS
Sbjct: 503 RCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRS 544



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 82/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F E+K  G  P   ++  LL  + K G   +   V+ +M ++    D+   N ++
Sbjct: 299 EAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELV 358

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y R G  ++   V+  M K     +  TY  +I+ YG+ G  ++   LF S+      
Sbjct: 359 AAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCV 418

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+ + L+   +K      +++  +M   GC P+  T   +++ C ++   + V  +
Sbjct: 419 PNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRV 478

Query: 237 VRTM 240
            R M
Sbjct: 479 FREM 482



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 1/151 (0%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L AYS+TG   K   +  +M + G  P     N +L+++G++G+ + K+  VL
Sbjct: 210 VRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVL 269

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +++   R G + + +  F  L +   +P  VT+ + L  + + 
Sbjct: 270 DEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKA 329

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +Y   L + +EM +  C  D  T   L++A
Sbjct: 330 GVYTEALSVLKEMEENSCPADSVTYNELVAA 360



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 100/216 (46%), Gaps = 4/216 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            ++ + +  +A  V E M + G+ P   ++  ++ AY K G   +   +   M ++G  P
Sbjct: 360 AYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 419

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +T   N++L+L G+  +  +M ++L  M+    + + +T+N ++ + G  G  + +  +F
Sbjct: 420 NTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVF 479

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + + +   +PD  T+ + ++AY R        +++ EM  AG      T   L++A + +
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARK 539

Query: 228 DQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
                   ++  M     K  +T+  +    Y + G
Sbjct: 540 GDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 575



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 1/141 (0%)

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           E ++   +   LK D  VI   + + GR  Q+    ++L  +    Y  D+  Y  +++ 
Sbjct: 160 EWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHA 219

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYP 212
           Y R G  EK   LF+ +      P +VT+   L  + +  + +R+ L + +EM   G   
Sbjct: 220 YSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKF 279

Query: 213 DGGTAKVLISACSSEDQIEQV 233
           D  T   ++SAC+ E  + + 
Sbjct: 280 DEFTCSTVLSACAREGLLREA 300



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 66/159 (41%), Gaps = 42/159 (26%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + P++ +F  + SI+     +  A  + E ++  G++P + ++  L+  Y + G   K E
Sbjct: 627 YKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAE 686

Query: 95  GVINQMHKSGLKPD-----------------------------------TFVINSMLNLY 119
            ++  + KS LKPD                                    F  N+ ++ Y
Sbjct: 687 EILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGY 746

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
             +G F ++E+V+  M K     +  T+ ++++ Y R G
Sbjct: 747 TAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 93/192 (48%), Gaps = 11/192 (5%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           H PN  +F             E+++  G+     S++ L+ +  K G  A+ E ++ +M 
Sbjct: 261 HKPNEGMFFL-----------EKLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMK 309

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
             GL+P+    N++L  Y R GQ ++++ V T +     + +  TY +LI+ Y R G ++
Sbjct: 310 WYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMD 369

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           ++E L+Q +    ++P+   +   +  Y     +++ +++  EM  AG  PD     V+I
Sbjct: 370 RLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVII 429

Query: 222 SACSSEDQIEQV 233
           +      Q+EQ 
Sbjct: 430 NTFGRTRQLEQA 441



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 35/221 (15%)

Query: 56  SDAHAVFEEMKRLGITPTMKSH-----------------------------------MLL 80
           ++A A+ EEMK  G+ P +K++                                    LL
Sbjct: 299 AEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLL 358

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
           + AY++ G + + E +  +M    ++P+T++   M+ +Y   GQ++K  ++L  M++   
Sbjct: 359 IDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGV 418

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             D   YN++IN +GR   +E+    F  +    ++PDVV+W S + A  +        +
Sbjct: 419 TPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARK 478

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           ++ +M++ GC P   T  ++I       +   V  +V  M 
Sbjct: 479 LYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMR 519



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 85/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           ++D + + EEM+  G+ P + ++  L+  Y++          +  M + G+ P     ++
Sbjct: 508 WNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSA 567

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           + N Y +LG  E+   VL  MEK +   +++  N+LIN +   G  ++   +F+ +    
Sbjct: 568 LANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKEAG 627

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L  D +T+T+ + A  R +       +F+EMI AGC PDG    +L SA
Sbjct: 628 LTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGCRPDGKAKDMLRSA 676



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 4/211 (1%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            A+++EM+   I P    +  ++T Y  TG   K   ++ +M ++G+ PD  V N ++N 
Sbjct: 372 EALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINT 431

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           +GR  Q E+       M+ G    D+ ++N LI+   + G   +   L+  +      P 
Sbjct: 432 FGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPT 491

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
             T+   +      K +    E+ EEM   G +P+  T   L+   +     +     ++
Sbjct: 492 AQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQ 551

Query: 239 TMHKD----MKTALPIYFNLYGEKGVARSNL 265
           TM +D      TA     N Y + G+    L
Sbjct: 552 TMKEDGMGPSPTAYSALANAYAQLGMCEQTL 582



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 99/207 (47%), Gaps = 7/207 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN +++  + +IY     +     +  EM++ G+TP    + +++  + +T  + +    
Sbjct: 385 PNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIA 444

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M   G++PD    NS+++   + GQ  +  ++   M     A    T+NI+I+  G 
Sbjct: 445 FFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGE 504

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
                 +  + + + +K + P+VVT+T+ +  Y++ +L++  +E  + M + G  P    
Sbjct: 505 HKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTA 564

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              L +A +     EQ   +++TM K+
Sbjct: 565 YSALANAYAQLGMCEQTLHVLQTMEKE 591



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 82/182 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM+  G+    K +  L+ A  +     +    + ++  SGL  D     S++   G
Sbjct: 234 LFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLG 293

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+  + E +L  M+      ++  YN L+  Y R G +++++ +   L    +  + +
Sbjct: 294 KHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKI 353

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + AY+R  L  R   +++EM D    P+      +I+      Q ++   L+R M
Sbjct: 354 TYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREM 413

Query: 241 HK 242
            +
Sbjct: 414 QQ 415



 Score = 43.9 bits (102), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/166 (18%), Positives = 68/166 (40%), Gaps = 2/166 (1%)

Query: 42  HTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H  N+ +  F  +     A   F +M+  GI P + S   L+ A  K G   +   +  +
Sbjct: 423 HVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYK 482

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G  P     N +++  G   ++  + E++  M       ++ TY  L+++Y +   
Sbjct: 483 MVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARL 542

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            +      Q++    + P    +++   AY++  +  + L + + M
Sbjct: 543 FQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTM 588



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 20/195 (10%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD----TFVINS 114
           H   E  ++LG     + +  L+ AY++  +  K    +++M   G  PD    T VI +
Sbjct: 161 HKALEVAEKLGSNLQRRGYNALVGAYAQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQA 220

Query: 115 ----MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF--Q 168
               ++++Y     F++       M+      D   YN L  I+  G   +  EG+F  +
Sbjct: 221 CRHGVVDIYTGFRLFQE-------MQAEGVQVDGKVYNDL--IFACGQAHKPNEGMFFLE 271

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            L A  L  D  ++ S + +  +         + EEM   G  P+      L+   S + 
Sbjct: 272 KLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKG 331

Query: 229 QIEQVTTLVRTMHKD 243
           Q++Q+ T V+T+ +D
Sbjct: 332 QLQQIDT-VKTLLRD 345


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 92/186 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + E+MK  G+TP   ++  LL    K   + +   ++ +M ++G +PDTF  N+
Sbjct: 178 LDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNT 237

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G++E+  ++L  M +     D+ TYN L++ + +   +++ E L + +  +R
Sbjct: 238 VVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRR 297

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P V+T+T+ +  +SR         + E+M  AG  PD  T   L+       ++E+  
Sbjct: 298 CAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAH 357

Query: 235 TLVRTM 240
            L+  M
Sbjct: 358 ELLEVM 363



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 81/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + E+M      PT+ ++  L+  +S+   +A    V+  M K+G+ PD    N 
Sbjct: 283 MDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNC 342

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   + G+ E+  E+L  M +   A D+ TY+IL+N   + G ++    L + +  + 
Sbjct: 343 LLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERG 402

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +P++VT+ + +  + +        ++ E M +  C PD  T   LI  
Sbjct: 403 CQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDG 451



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 82/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V + M      P + ++  L+    +T  + +   ++ +M +SGL PDT   N++LN
Sbjct: 146 ARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLN 205

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  Q E++ ++L  M +     D  +YN ++      G  E+   + + +  K+  P
Sbjct: 206 GLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGP 265

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+ S +  + +         + E+M+   C P   T   LI   S  D++     ++
Sbjct: 266 DVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVM 325

Query: 238 RTMHK 242
             M K
Sbjct: 326 EDMFK 330



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 8/217 (3%)

Query: 43  TPNLFVFIFSIY-FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           TP++  +   I  +  A+ + +    LGI+P   S+  +L     TG V + + V++ M 
Sbjct: 439 TPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMT 498

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEE---VLTAMEKGSYAADISTYNILINIYGRGG 158
           K G  P +   +    + G L   E+ +E   +L  M +     ++ TY+ILIN   +  
Sbjct: 499 KQGCPPTS---SHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTK 555

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            +E    +   +  K   PDV T+TS +  + +        + F+ M D+GC PD     
Sbjct: 556 RVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYN 615

Query: 219 VLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNL 254
           +LIS       +E+   +++ M  K        YF+L
Sbjct: 616 ILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSL 652



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA+ V E+M + GI+P + ++  LL    K G + +   ++  M +    PD    + 
Sbjct: 318 LADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSI 377

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   +LG+ +    +L  M +     ++ T+N +I+ + + G +++   + + +    
Sbjct: 378 LVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVS 437

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDVVT+++ +  Y +    +    I       G  PD  +   ++    S  ++E+  
Sbjct: 438 CTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQ 491

Query: 235 TLVRTMHK 242
            ++  M K
Sbjct: 492 EVMDLMTK 499



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/205 (18%), Positives = 82/205 (40%), Gaps = 7/205 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P  F +   I+         +A+ + +EM +    P    +  L+    K G +     
Sbjct: 89  SPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARN 148

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V+  M +    PD     S++    +    ++  +++  M++     D   YN L+N   
Sbjct: 149 VLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLC 208

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   +E++  L + +     +PD  ++ + +A       Y    +I E+MI+  C PD  
Sbjct: 209 KQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVV 268

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   L+       ++++   L+  M
Sbjct: 269 TYNSLMDGFCKVSKMDEAERLLEDM 293



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 33/202 (16%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG-------- 123
           P+  ++  L+T +S+ GN      + N+M      PD    N++L  Y ++G        
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSH 81

Query: 124 ----------------------QFEKMEE---VLTAMEKGSYAADISTYNILINIYGRGG 158
                                 Q ++++E   +L  M +     D + YN LI    + G
Sbjct: 82  FRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMG 141

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            I+    + + +  +   PDV+T+TS +    +        ++ E+M ++G  PD     
Sbjct: 142 KIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYN 201

Query: 219 VLISACSSEDQIEQVTTLVRTM 240
            L++    ++Q+E+V+ L+  M
Sbjct: 202 ALLNGLCKQNQLEEVSKLLEEM 223



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 79/174 (45%), Gaps = 6/174 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V + M + G  PT   + L++          +   ++  M + G +P+ +  + ++
Sbjct: 489 EAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILI 548

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-- 174
           N   +  + E    VL  M +     D++TY  LI+ + +   I KM+  +Q     R  
Sbjct: 549 NGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCK---INKMDAAYQCFKTMRDS 605

Query: 175 -LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             +PD + +   ++ + +     + +E+ + M++ GC PD  T   L+ + ++E
Sbjct: 606 GCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 78/174 (44%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE 126
           ++  +PT  ++ +L+    +   + +   ++++M +    PD  V N ++    ++G+ +
Sbjct: 85  KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKID 144

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
               VL  M + S   D+ TY  LI    +   +++   L + +    L PD V + + L
Sbjct: 145 AARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALL 204

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
               ++       ++ EEM++AG  PD  +   +++      + E+   ++  M
Sbjct: 205 NGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKM 258



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 71/169 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  + E+M      P + ++  L+  + K   + + E ++  M      P      +
Sbjct: 248 YEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTT 307

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R  +      V+  M K   + D+ TYN L++   + G +E+   L + +  K 
Sbjct: 308 LIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKD 367

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             PDVVT++  +    +         + E M++ GC P+  T   +I  
Sbjct: 368 CAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDG 416


>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 86/177 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH VF EM   G+ P+  ++  LL AY+K   V   E +   M +   +PD     ++L
Sbjct: 298 EAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLL 357

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y   G  +K E +L  M++     ++ TY  L+  Y     I  M   F+ L    +K
Sbjct: 358 AAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIK 417

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           P+   +T  +  + +++ +   L  F++M+D+GC  D  +   L+ AC + +Q ++V
Sbjct: 418 PNSTIFTLLVRTFGQQEDFESALSWFKKMLDSGCPADQRSRAALMDACQTSEQKQEV 474



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 89/193 (46%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           +  F    +DA A    M+   I P + ++  L+ AYSK   V +   V  +M  SGL+P
Sbjct: 254 LMAFQKTVADAEACLRHMQAAKIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRP 313

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                N++L+ Y +  + E  E +  +M +     DI +Y  L+  Y   G ++K E L 
Sbjct: 314 SRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLL 373

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +    L+P+VVT+ + +  Y+        L+ FE++  AG  P+     +L+     +
Sbjct: 374 KRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNSTIFTLLVRTFGQQ 433

Query: 228 DQIEQVTTLVRTM 240
           +  E   +  + M
Sbjct: 434 EDFESALSWFKKM 446



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 33/219 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F EM+ +G+ P +     LL A+++TGN  + E +  +M K+G  P        +N
Sbjct: 126 AELSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYIN 185

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLP----- 171
              +  +F   E +   +++ + A  D   YN++++ YG+ G   + + LF+ +      
Sbjct: 186 ALCKAERFNDAERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVP 245

Query: 172 ---------------------------AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
                                      A ++KPDV+T+T  + AYS+ +       +F E
Sbjct: 246 MTVVTFNSLMAFQKTVADAEACLRHMQAAKIKPDVITYTGLINAYSKARRVEEAHVVFRE 305

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           M+ +G  P       L+ A +   ++E   +L ++M +D
Sbjct: 306 MVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQD 344



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 7/193 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS+  A+F +MK  G+  T+ +   L+ A+ KT  VA  E  +  M  + +KPD      
Sbjct: 229 FSEQQALFRQMKGAGVPMTVVTFNSLM-AFQKT--VADAEACLRHMQAAKIKPDVITYTG 285

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y +  + E+   V   M           YN L++ Y +   +E  E LF+S+   R
Sbjct: 286 LINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDR 345

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PD+ ++T+ LAAY+     ++   + + M  AG  P+  T   L+   +S   +  + 
Sbjct: 346 CRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTS---VHDIN 402

Query: 235 TLVRTMHKDMKTA 247
            +++T  +D++ A
Sbjct: 403 AMLQTF-EDLQKA 414



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA-DISTYNILINI 153
           GV++   + G      V+ +++ L  +L ++  + EVL  +++  +    I  +N++I  
Sbjct: 58  GVLSSRKEDGKVSKGDVLGTLIRLR-QLNKWTMVLEVLLWLKQQDWWNFGIHDFNLMIAA 116

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+ G     E  F  +    L+P+V  +TS L A++R   + R   I++EM+  G  P 
Sbjct: 117 YGKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPT 176

Query: 214 GGTAKVLISA-CSSE 227
             T +V I+A C +E
Sbjct: 177 EVTYQVYINALCKAE 191


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 81/158 (51%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AV++ +   G TP   ++  L++AY KT  + K   V  +M +  +       +S++
Sbjct: 267 EALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLI 326

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + GQ+E    +   M++     +  TYN L+    +GG  EK   +F+ + A    
Sbjct: 327 SACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCT 386

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           PDVVT+T+ ++AY R   +++ L+ F +M   GC PD 
Sbjct: 387 PDVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDA 424



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V + MK  G+ P ++++  L+ A +      +   V  ++   G  P++   N++++ YG
Sbjct: 236 VLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNALISAYG 295

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  Q  K  EV   M + +    + TY+ LI+   + G  E    +F  +   +  P+ V
Sbjct: 296 KTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTV 355

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+ S + A ++   + +  E+FE+M   GC PD  T   LISA
Sbjct: 356 TYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISA 398



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 87/202 (43%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           +T  + + I       A  + +EM+   I   + ++  L+    K G +     + N M 
Sbjct: 147 YTATISLCIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMR 206

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
                P+    N+++++YG+LGQ+E+   VL  M+       + TYN LI          
Sbjct: 207 AVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPR 266

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   ++Q L +    P+  T+ + ++AY +     + LE+++EM+         T   LI
Sbjct: 267 EALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLI 326

Query: 222 SACSSEDQIEQVTTLVRTMHKD 243
           SAC    Q E    +   M +D
Sbjct: 327 SACEKAGQWETALRIFNEMQQD 348



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN   +  + S Y        A  V++EM R  +  ++ ++  L++A  K G       
Sbjct: 281 TPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALR 340

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + N+M +    P+T   NS++    + GQ+EK  EV   M       D+ TY  LI+ Y 
Sbjct: 341 IFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYE 400

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           RGG  +K    F  +  +  KPD + + +
Sbjct: 401 RGGQWQKALQAFHKMCVQGCKPDAIVYNA 429



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 47/106 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +F EM++    P   ++  L+TA ++ G   K   V  QM+  G  PD     +
Sbjct: 335 WETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTA 394

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
           +++ Y R GQ++K  +    M       D   YN +I+     G I
Sbjct: 395 LISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLWETGII 440



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  VFE+M   G TP + ++  L++AY + G   K     ++M   G KPD  V N+
Sbjct: 370 WEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNA 429

Query: 115 MLNLYGRLG----QFEKMEEVLTAMEKGSY 140
           +++     G    Q + ++  +TA+++G +
Sbjct: 430 IIDTLWETGIIWAQGKALQLFMTAVQQGHF 459



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/167 (17%), Positives = 80/167 (47%), Gaps = 1/167 (0%)

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
           +V +   ++ +M    ++ +     +++N+  + G+     ++  +M   +   ++ TYN
Sbjct: 159 DVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYN 218

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            L+++YG+ G  E+   +   +  + ++P + T+ + + A +     R  L +++ ++  
Sbjct: 219 TLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSD 278

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNL 254
           G  P+  T   LISA     Q+ +   + + M  ++M  ++  Y +L
Sbjct: 279 GFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSL 325


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 83/174 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F       +EM + GI P + S+  L+    K   +   E V+  M   G+ P+  + N
Sbjct: 445 HFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYN 504

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++     L + +        M +    A + TYN LIN  GR G ++K E LF  +  K
Sbjct: 505 MLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGK 564

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
              PDV+T+ S ++ Y++    ++CLE++++M   G  P  GT   LI AC  E
Sbjct: 565 GCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKE 618



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  ++   G+TP+  S+ +L+ AY + G+V K      QM + GL+P+    N++++
Sbjct: 344 AEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVIS 403

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G+ +  E  +  M +   +  + TYN LIN YG+ G   +       +    +KP
Sbjct: 404 KFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKP 463

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           +V+++ S +    + +       +  +MI  G  P+     +LI A  S
Sbjct: 464 NVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCS 512



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 1/186 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA   F+EM + GI  T+ ++  L+    + G V K E +  QM   G  PD    NS
Sbjct: 516 LKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNS 575

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y +    +K  E+   M+       + T++ LI    + G +  M+ +FQ +    
Sbjct: 576 LISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVV-TMDKMFQEMLQMD 634

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD   +   + +Y+      + + + ++M+D G   D  T   LI A   + ++ ++ 
Sbjct: 635 LVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIK 694

Query: 235 TLVRTM 240
            LV  M
Sbjct: 695 HLVDDM 700



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 32/235 (13%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM +  + P   ++  L+  Y K G + +  G   +M +  ++ +    NS+L
Sbjct: 210 DARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLL 269

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSY----------------------------AADISTYN 148
           N     G+ +   EVL  ME   +                              D  TY 
Sbjct: 270 NGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYC 329

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           IL+N   R G IEK E +   L    + P  +++   + AY ++   ++ +   E+M + 
Sbjct: 330 ILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEER 389

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIY---FNLYGEKG 259
           G  P+  T   +IS      +++   T VR M  K +   +  Y    N YG+KG
Sbjct: 390 GLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKG 444



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 75  KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA 134
           +++ +LL    + G + K E V+ ++ ++G+ P     N ++N Y + G  +K       
Sbjct: 326 RTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQ 385

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           ME+     +  T+N +I+ +   G ++  E   + +  K + P V T+ S +  Y +K  
Sbjct: 386 MEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGH 445

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVRTMHKDMKTALPIY 251
           + RC E  +EM  AG  P+  +   LI+  C     I+    L   + + +     IY
Sbjct: 446 FVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIY 503



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 77/178 (43%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           E+M+  G+ P   +   +++ + +TG V   E  + +M + G+ P     NS++N YG+ 
Sbjct: 384 EQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQK 443

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G F +  E L  M+K     ++ +Y  LIN   +   +   E +   +  + + P+   +
Sbjct: 444 GHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIY 503

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              + A       +     F+EMI +G      T   LI+      ++++   L   M
Sbjct: 504 NMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQM 561



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 1/172 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++++MK LGI PT+ +   L+ A  K G V   + +  +M +  L PD FV N M+  Y 
Sbjct: 592 LYDKMKILGIKPTVGTFHPLIYACRKEG-VVTMDKMFQEMLQMDLVPDQFVYNEMIYSYA 650

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G   K   +   M       D  TYN LI  Y R   + +++ L   + AK L P V 
Sbjct: 651 EDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVD 710

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           T+   +      K +      + EM++ G   +      LIS    E  + +
Sbjct: 711 TYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLRE 762



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 73/169 (43%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L   + S +F    AVF ++   G  P   ++   + A     ++ K   ++  M K G+
Sbjct: 129 LRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGM 188

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P  F  N +L    ++ + +   ++   M + +   +  TYN LI+ Y + G IE+  G
Sbjct: 189 GPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALG 248

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
             + +  + ++ ++VT+ S L             E+  EM  +G  P G
Sbjct: 249 FKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGG 297



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/146 (19%), Positives = 61/146 (41%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L++   S    +A  ++  M++ G  P+ +S   LL     + +  K   V   +  SG 
Sbjct: 94  LWLCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGT 153

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD       +     L   +K  E++ +M K      +  YN+++    +   I+    
Sbjct: 154 RPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARK 213

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSR 191
           LF  +  + + P+ VT+ + +  Y +
Sbjct: 214 LFDEMIQRNMVPNTVTYNTLIDGYCK 239


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 93/192 (48%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F EM+R G  P + ++  ++ AY K   + +   ++  M   GL P+    N ++N   R
Sbjct: 226 FGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCR 285

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            GQ ++  E+L  M K  Y  D  T+N LIN Y   G   +   L   +    L P+VVT
Sbjct: 286 EGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVT 345

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +T+ + +  +     R +E  ++M D G +P+G T   LI   S +  ++Q   +++ M 
Sbjct: 346 YTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMV 405

Query: 242 KDMKTALPIYFN 253
           ++  T   I +N
Sbjct: 406 ENGFTPTIITYN 417



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 93/186 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  EM + G++P + ++  L+ +  K GN+ +    ++QM   GL P+     +
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G  ++  +++  M +  +   I TYN LIN +   G +E   GL Q +  + 
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDVV++++ ++ + R +   +  ++  EM+  G  PD  T   LI     + ++ +V 
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 235 TLVRTM 240
            L + M
Sbjct: 504 DLFQEM 509



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 93/184 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A+ + +EM   G TPT+ ++  L+  +   G +    G++ +M + G  PD    +
Sbjct: 393 FLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYS 452

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + R  + EK  ++   M     + D++TY+ LI    +   + ++  LFQ + + 
Sbjct: 453 TIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL 512

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD VT+TS + AY  +    + L + +EMI  G  PD  T  VLI+  + + + ++ 
Sbjct: 513 GLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEA 572

Query: 234 TTLV 237
             L+
Sbjct: 573 KRLL 576



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 91/179 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A    ++M+  G+ P  +++  L+  +S+ G + +   ++ +M ++G  P     N+++N
Sbjct: 362 AMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALIN 421

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  LG+ E    +L  M +  +  D+ +Y+ +I+ + R   +EK   L   + AK + P
Sbjct: 422 GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISP 481

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           DV T++S +    +++      ++F+EM+  G  PD  T   LI+A   E  +++   L
Sbjct: 482 DVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 86/184 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +   M   G+ P + S+ +++    + G + +   ++ +M K    PD    N+++
Sbjct: 256 EAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLI 315

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y  +G F +   +   M K   + ++ TY  LIN   + G + +       +  + L 
Sbjct: 316 NGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLH 375

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+T+ +  +S++   ++  +I +EM++ G  P   T   LI+      ++E  + L
Sbjct: 376 PNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGL 435

Query: 237 VRTM 240
           ++ M
Sbjct: 436 LQEM 439



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 1/190 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
            + A ++    K  G  P + S+  +L A  +T    K  EG+  +M +SG+ P+ +  N
Sbjct: 148 INKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  +   G  E        ME+     ++ TYN +I+ Y +   I +   L + +  K
Sbjct: 208 ILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK 267

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+++++   +    R+   +   EI EEM      PD  T   LI+   +     Q 
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 234 TTLVRTMHKD 243
             L   M K+
Sbjct: 328 LVLHAEMVKN 337



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 15/192 (7%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM   GI+P + ++  L+    K   + +   +  +M   GL PD     S++N Y   G
Sbjct: 473 EMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEG 532

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             +K   +   M +  ++ DI TYN+LIN + +    ++ + L   L  +   P+ +T+ 
Sbjct: 533 DLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYN 592

Query: 184 ------------SRLA---AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
                       S LA    +  K L      + E M+  G   +     V+I   S   
Sbjct: 593 TLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVG 652

Query: 229 QIEQVTTLVRTM 240
            IE+   L + M
Sbjct: 653 NIEKAYNLYKEM 664



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 1/176 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE-VLTAMEK 137
           L++ + ++   + K   ++N     G  P     N++L+   R  Q  K+ E +   M +
Sbjct: 137 LVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVE 196

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
              + ++ TYNILI  +   G +E     F  +      P+VVT+ + + AY + +    
Sbjct: 197 SGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGE 256

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
             ++   M   G  P+  +  V+I+    E Q+++ + ++  M K       + FN
Sbjct: 257 AFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFN 312



 Score = 43.9 bits (102), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 36/192 (18%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM  LG+ P   ++  L+ AY   G++ K   + ++M + G  PD    N ++N + 
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFN 564

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINI---------------YGRGGFIEKMEG 165
           +  + ++ + +L  +       +  TYN LI+                +   G + + + 
Sbjct: 565 KQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADR 624

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           + +S+  K  K +   +   +  +S+     +   +++EM+ +G  P   T   L  +  
Sbjct: 625 VLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLY 684

Query: 226 SEDQIEQVTTLV 237
            E +  ++  L+
Sbjct: 685 HEGKEVELNQLL 696


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 93/192 (48%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F EM+R G  P + ++  ++ AY K   + +   ++  M   GL P+    N ++N   R
Sbjct: 226 FGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCR 285

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            GQ ++  E+L  M K  Y  D  T+N LIN Y   G   +   L   +    L P+VVT
Sbjct: 286 EGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVT 345

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +T+ + +  +     R +E  ++M D G +P+G T   LI   S +  ++Q   +++ M 
Sbjct: 346 YTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMV 405

Query: 242 KDMKTALPIYFN 253
           ++  T   I +N
Sbjct: 406 ENGFTPTIITYN 417



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 93/186 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  EM + G++P + ++  L+ +  K GN+ +    ++QM   GL P+     +
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G  ++  +++  M +  +   I TYN LIN +   G +E   GL Q +  + 
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDVV++++ ++ + R +   +  ++  EM+  G  PD  T   LI     + ++ +V 
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 235 TLVRTM 240
            L + M
Sbjct: 504 DLFQEM 509



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 93/184 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A+ + +EM   G TPT+ ++  L+  +   G +    G++ +M + G  PD    +
Sbjct: 393 FLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYS 452

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + R  + EK  ++   M     + D++TY+ LI    +   + ++  LFQ + + 
Sbjct: 453 TIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL 512

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD VT+TS + AY  +    + L + +EMI  G  PD  T  VLI+  + + + ++ 
Sbjct: 513 GLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEA 572

Query: 234 TTLV 237
             L+
Sbjct: 573 KRLL 576



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 91/179 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A    ++M+  G+ P  +++  L+  +S+ G + +   ++ +M ++G  P     N+++N
Sbjct: 362 AMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALIN 421

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  LG+ E    +L  M +  +  D+ +Y+ +I+ + R   +EK   L   + AK + P
Sbjct: 422 GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISP 481

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           DV T++S +    +++      ++F+EM+  G  PD  T   LI+A   E  +++   L
Sbjct: 482 DVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 86/184 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +   M   G+ P + S+ +++    + G + +   ++ +M K    PD    N+++
Sbjct: 256 EAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLI 315

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y  +G F +   +   M K   + ++ TY  LIN   + G + +       +  + L 
Sbjct: 316 NGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLH 375

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+T+ +  +S++   ++  +I +EM++ G  P   T   LI+      ++E  + L
Sbjct: 376 PNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGL 435

Query: 237 VRTM 240
           ++ M
Sbjct: 436 LQEM 439



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 1/190 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
            + A ++    K  G  P + S+  +L A  +T    K  EG+  +M +SG+ P+ +  N
Sbjct: 148 INKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  +   G  E        ME+     ++ TYN +I+ Y +   I +   L + +  K
Sbjct: 208 ILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK 267

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+++++   +    R+   +   EI EEM      PD  T   LI+   +     Q 
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 234 TTLVRTMHKD 243
             L   M K+
Sbjct: 328 LVLHAEMVKN 337



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 15/192 (7%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM   GI+P + ++  L+    K   + +   +  +M   GL PD     S++N Y   G
Sbjct: 473 EMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEG 532

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             +K   +   M +  ++ DI TYN+LIN + +    ++ + L   L  +   P+ +T+ 
Sbjct: 533 DLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYN 592

Query: 184 ------------SRLA---AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
                       S LA    +  K L      + E M+  G   +     V+I   S   
Sbjct: 593 TLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVG 652

Query: 229 QIEQVTTLVRTM 240
            IE+   L + M
Sbjct: 653 NIEKAYNLYKEM 664



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 1/176 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE-VLTAMEK 137
           L++ + ++   + K   ++N     G  P     N++L+   R  Q  K+ E +   M +
Sbjct: 137 LVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVE 196

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
              + ++ TYNILI  +   G +E     F  +      P+VVT+ + + AY + +    
Sbjct: 197 SGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGE 256

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
             ++   M   G  P+  +  V+I+    E Q+++ + ++  M K       + FN
Sbjct: 257 AFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFN 312



 Score = 43.9 bits (102), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 36/192 (18%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM  LG+ P   ++  L+ AY   G++ K   + ++M + G  PD    N ++N + 
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFN 564

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINI---------------YGRGGFIEKMEG 165
           +  + ++ + +L  +       +  TYN LI+                +   G + + + 
Sbjct: 565 KQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADR 624

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           + +S+  K  K +   +   +  +S+     +   +++EM+ +G  P   T   L  +  
Sbjct: 625 VLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLY 684

Query: 226 SEDQIEQVTTLV 237
            E +  ++  L+
Sbjct: 685 HEGKEVELNQLL 696


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 88/180 (48%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  GI   + ++  L+    K   +     V  QM   G  P+    N+++++YG+ G
Sbjct: 220 EMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTG 279

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            +E+   VL A+E+     +I TYN +I      G  ++   +++ + A   +P   T+T
Sbjct: 280 AWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYT 339

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + ++AY +     R L+IF++M+  GC  +  T   LISAC    + E    L R MH +
Sbjct: 340 ALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELFREMHTE 399



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 81/167 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  ++E M   G  PT  ++  L++AY K G + +   +   M + G + +    +S++
Sbjct: 318 EALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLI 377

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G++E   E+   M       ++ TYN LI    +G   EK + +F+ +  +  K
Sbjct: 378 SACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCK 437

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD VT+   +AAY R   +RR L  FE+M    C PD      ++ A
Sbjct: 438 PDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGA 484



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 89/181 (49%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ +M   G TP + ++  L+  Y KTG   +   V++ + + G+ P+    N+++    
Sbjct: 252 VYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACN 311

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             GQ ++   +   M         +TY  LI+ YG+ G +++   +FQ +  +  + +V+
Sbjct: 312 MSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVI 371

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T++S ++A  +   +   LE+F EM   GC P+  T   LI+AC+   Q E+   +   M
Sbjct: 372 TYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQM 431

Query: 241 H 241
            
Sbjct: 432 Q 432



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 98/188 (52%), Gaps = 7/188 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPNL  +  +  +Y     + +A  V + ++R GI P ++++  ++ A + +G   +   
Sbjct: 262 TPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALR 321

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +  +M  +G +P      ++++ YG+ GQ ++  ++   M +     ++ TY+ LI+   
Sbjct: 322 IYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACE 381

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  E    LF+ +  +  +P+VVT+ S +AA ++   + +  E+FE+M   GC PD  
Sbjct: 382 KAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAV 441

Query: 216 TAKVLISA 223
           T   LI+A
Sbjct: 442 TFGGLIAA 449



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 71/145 (48%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M   G++ +    ++++N+  +  + +   +V   M       ++ TYN LI++YG
Sbjct: 217 LVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYG 276

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  E+   +  +L  + + P++ T+ + + A +     +  L I+E M+ AG  P   
Sbjct: 277 KTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTAT 336

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   LISA     Q+++   + + M
Sbjct: 337 TYTALISAYGKNGQLDRALQIFQDM 361



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 83/190 (43%), Gaps = 10/190 (5%)

Query: 80  LLTAYSKTGNVAKCEGVINQMH----KSGLKP--DTFVINSMLNLYGRLGQFEKMEEVLT 133
           LL   +K+G+V + + + + +        L P  +T    +M++  G   Q  +  E++ 
Sbjct: 160 LLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVA 219

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            M       ++ TY+ L+N+  +G  ++    +++ + A+   P++VT+ + +  Y +  
Sbjct: 220 EMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTG 279

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM----HKDMKTALP 249
            +   + + + +   G  P+  T   +I AC+   Q ++   +   M     +   T   
Sbjct: 280 AWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYT 339

Query: 250 IYFNLYGEKG 259
              + YG+ G
Sbjct: 340 ALISAYGKNG 349



 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM   G  P + ++  L+ A ++     K + +  QM   G KPD      ++ 
Sbjct: 389 ALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIA 448

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            Y R G + +       M+  +   D   YN ++    + G +
Sbjct: 449 AYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGLV 491


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ ++ EM    I P   S+ +L+  Y   G V++   + ++M + G+KP     N+++ 
Sbjct: 484 ANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIK 543

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K +E L  M       D  TYN LIN + +G +++K   L   +  K L+P
Sbjct: 544 GYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQP 603

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           DVVT+   L  + R+   +    I  +MI+ G  PD  T   LI+   S+D +++
Sbjct: 604 DVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKE 658



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++    F+ ++R G   ++ +   LL    K G V     V N++ +SG++ + + +N 
Sbjct: 131 LNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNI 190

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+N   +  + + ++  L  ME+    ADI TYN LIN Y R G + +   +  S+  K 
Sbjct: 191 MVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKG 250

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSSEDQIEQV 233
           LKP + T+ + +    +K  Y R   +F EM+  G  PD  T   +L+ +C + + +E  
Sbjct: 251 LKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAK 310

Query: 234 TTLVRTMHKDMKTALPIYFNLYG 256
                 +H+ +   L  + +L G
Sbjct: 311 DIFSDMLHRGVSPDLISFSSLIG 333



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 86/160 (53%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + S+A  +++EM R GI PT+ +   ++  Y ++G+++K +  + +M   G+ PD+   N
Sbjct: 515 FVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYN 574

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N + +    +K   ++  ME      D+ TYN+++N + R G +++ E + + +  +
Sbjct: 575 TLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIER 634

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            + PD  T+T+ +  Y  +   +      +EM+  G  PD
Sbjct: 635 GIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA+A+F+EM   G+ P   +   L+  + K GN+ K   +   M +  +KPD    N 
Sbjct: 411 LADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNI 470

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + +  + EK  E+   M       +  +Y IL+N Y   GF+ +   L+  +  K 
Sbjct: 471 LIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKG 530

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP +VT  + +  Y R     +  E   +MI  G  PD  T   LI+     + +++  
Sbjct: 531 IKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAF 590

Query: 235 TLVRTMH 241
            L+  M 
Sbjct: 591 FLINKME 597



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V   M   G+ PT+ ++  ++    K G   + +GV N+M   GL PDT   N+
Sbjct: 236 LGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNT 295

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    R   F + +++ + M     + D+ +++ LI +  R G +++    F+ +    
Sbjct: 296 LLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSG 355

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L PD V +T  +  Y R  +    LEI ++M++ GC  D
Sbjct: 356 LVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALD 394



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM  +G++P   ++  LL    +  N  + + + + M   G+ PD    +S++ 
Sbjct: 274 AKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIG 333

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +  R G  ++       M+      D   Y ILIN Y R G + +   +   +  +    
Sbjct: 334 VSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCAL 393

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV + + L    +KKL      +F+EM++ G  PD  T   LI     E  + +  +L 
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLF 453

Query: 238 RTM-HKDMKTALPIY 251
             M  K++K  +  Y
Sbjct: 454 GIMTQKNIKPDIVTY 468



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 4/190 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V+ E+ R GI   + +  +++ A  K   +   +  +  M + G+  D    N+++N
Sbjct: 169 AWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLIN 228

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   +  EV+ +M        + TYN +IN   + G   + +G+F  + +  L P
Sbjct: 229 AYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSP 288

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+ + L    R   +    +IF +M+  G  PD  +   LI   S    ++Q     
Sbjct: 289 DTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYF 348

Query: 238 RTMHKDMKTA 247
           R    DMKT+
Sbjct: 349 R----DMKTS 354



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 81/186 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F +M   G++P + S   L+   S+ G++ +       M  SGL PD  +   
Sbjct: 306 FLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTI 365

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y R G   +  E+   M +   A D+  YN ++N   +   +     LF  +  + 
Sbjct: 366 LINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERG 425

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD  T+T+ +  + ++    + L +F  M      PD  T  +LI       ++E+  
Sbjct: 426 VVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKAN 485

Query: 235 TLVRTM 240
            L   M
Sbjct: 486 ELWNEM 491



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 80/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D      +M++ GI   + ++  L+ AY + G + +   V+N M   GLKP  F  N+
Sbjct: 201 IDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNA 260

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G++ + + V   M     + D +TYN L+    R     + + +F  +  + 
Sbjct: 261 VINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRG 320

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + PD+++++S +   SR     + L  F +M  +G  PD     +LI+ 
Sbjct: 321 VSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILING 369



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 1/174 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  + ++M   G    + ++  +L    K   +A    + ++M + G+ PD     ++
Sbjct: 377 SEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTL 436

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G   K   +   M + +   DI TYNILI+ + +   +EK   L+  + ++++
Sbjct: 437 IHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKI 496

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
            P+ +++   +  Y           +++EMI  G  P   T   +I   C S D
Sbjct: 497 FPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGD 550


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 94/182 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ +M+  G    + ++  L+  Y K+G   +   V+ QM +  ++P T   N+++    
Sbjct: 348 VYRDMQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACN 407

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              Q+++   V   M   S+  + +TYN LI+ + +GG + K+  +F+ +  K  +  V+
Sbjct: 408 TSNQWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVI 467

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T++S ++A  +   ++  L++FEEM   GC P+  +   LI+AC+   Q E+   +   M
Sbjct: 468 TYSSLISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQM 527

Query: 241 HK 242
            +
Sbjct: 528 QR 529



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  V+E+M      P   ++  L++A+SK G++ K   V  +M + G +      +S
Sbjct: 412 WQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSS 471

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G+++   ++   M       ++ +YN LI    +G   EK   +F+ +  + 
Sbjct: 472 LISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQG 531

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPD 213
            +PDVV++T+ + AY R   +RR L  FEEMI A  C PD
Sbjct: 532 CRPDVVSYTALIQAYERGGQWRRALAAFEEMIRARPCAPD 571



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           V+  S  + +A AV E+MKR  I P  ++   L+ A + +    +   V  QM  S   P
Sbjct: 370 VYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPP 429

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +T   N++++ + + G   K+  V   M +      + TY+ LI+   + G  +    LF
Sbjct: 430 NTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLF 489

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + +  +   P+V+++ S + A ++   + +  E+FE+M   GC PD  +   LI A
Sbjct: 490 EEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQA 545



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 92/189 (48%), Gaps = 12/189 (6%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG---------VINQMHKSGLKPDTFV 111
           +F+ ++RLG    +     LL  ++ T  ++ C           +  +M   G++ +   
Sbjct: 272 LFDLLRRLGPGSPLAP---LLDEFTFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHT 328

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            ++++N+  + GQ++   +V   M+     A++ TYN LI++YG+ G  E+   + + + 
Sbjct: 329 FSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMK 388

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            +R++P   T+ + + A +    ++  L ++E+M  +   P+  T   LISA S    + 
Sbjct: 389 RERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLP 448

Query: 232 QVTTLVRTM 240
           +V  + + M
Sbjct: 449 KVLAVFKEM 457


>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 862

 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 1/163 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM   G TP   +++ L+ A+++ G  A+   V+ QM   G  P       +L+LYG
Sbjct: 302 LFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYG 361

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+F+ + E+   M + +   D +TYN+L +++G GGF +++  LF  +    ++PD+ 
Sbjct: 362 RQGRFDGVRELFREM-RTAVPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDME 420

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T    L A  +  L+    E+ + +   G  P       L+ A
Sbjct: 421 TCEGVLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEA 463



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 81/167 (48%), Gaps = 1/167 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +   M   G+ P   S+  ++ A+++ G++++   +  +M  +G  PD      ++ 
Sbjct: 264 AEMLLRAMLEAGVLPDTASYRHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLME 323

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R+G   +   VL  M+    A   +TY +L+++YGR G  + +  LF+ +    + P
Sbjct: 324 AHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTA-VPP 382

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           D  T+    + +     ++  +E+F +M+  G  PD  T + ++ AC
Sbjct: 383 DTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVAC 429



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 105/234 (44%), Gaps = 18/234 (7%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----VAKCEG 95
           L +T  +  +  +    +A A+ ++MK  G+ PT  ++  +L A ++  +         G
Sbjct: 169 LSYTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDMLLG 228

Query: 96  VINQMHKS---GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           +  +M       ++PD    N++L         ++ E +L AM +     D ++Y  +++
Sbjct: 229 LFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVD 288

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            + R G + ++  LF+ +      PD   +   + A++R       + +  +M   GC P
Sbjct: 289 AFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAP 348

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP-------IYFNLYGEKG 259
              T +VL+     + + +     VR + ++M+TA+P       + F+++G+ G
Sbjct: 349 TAATYRVLLDLYGRQGRFDG----VRELFREMRTAVPPDTATYNVLFSVFGDGG 398



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 19/202 (9%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----------- 121
           T  S+  L+ AY++     +   +++QM  +G+ P     N++L    R           
Sbjct: 167 TALSYTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDML 226

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           LG F +M   ++   +     D++TYN L+         ++ E L +++    + PD  +
Sbjct: 227 LGLFAEMRHDVSPAVR----PDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTAS 282

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   + A++R     R  E+F EM D G  PD      L+ A +      +   ++R M 
Sbjct: 283 YRHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQ 342

Query: 242 KD----MKTALPIYFNLYGEKG 259
            D          +  +LYG +G
Sbjct: 343 ADGCAPTAATYRVLLDLYGRQG 364



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVIN 113
           + +A+  F  M  +G  PT++++  L   ++K G   + E + ++M  S G++ +    +
Sbjct: 470 YEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFD 529

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  Y +  Q +   +    M K  +  D  +   ++N Y   G I++ +  F+ + + 
Sbjct: 530 ALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEEIQSN 589

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              P ++ +   L+ Y+R   +    ++ EEM
Sbjct: 590 MAVPSIIAYCMMLSLYARNDRWADAYDLLEEM 621



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 88/196 (44%), Gaps = 8/196 (4%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF    +F +   +F +M R GI P M++   +L A  + G       V++ + K G+ P
Sbjct: 393 VFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKEGMVP 452

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++   G    +E+       M +      I TYN L N++ +GG  ++ E +F
Sbjct: 453 TAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQEAESIF 512

Query: 168 QSLP-AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C- 224
             +  +  ++ +  ++ + + AY +       ++ + EM  +   PD  + + +++A C 
Sbjct: 513 SRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 572

Query: 225 -----SSEDQIEQVTT 235
                 S++Q E++ +
Sbjct: 573 AGVIDESKEQFEEIQS 588



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F EM R  + P   ++ +L + +   G   +   + + M ++G++PD      
Sbjct: 366 FDGVRELFREM-RTAVPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEG 424

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L   G+ G  E   EVL  + K         Y  L+   G     E+    F  +    
Sbjct: 425 VLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIG 484

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQV 233
             P + T+ S    +++  L++    IF  M + AG   +  +   LI A     Q++  
Sbjct: 485 SLPTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDA 544

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 545 VKAYMEMRK 553


>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 636

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 2/189 (1%)

Query: 56  SDAHA--VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           SDA    ++EEM R+G+     +  +L     + G+V K  G + +M + G  PD    N
Sbjct: 240 SDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYN 299

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ Y R G+ E    +   M +     D+ +Y  L+    R G + +   LF  +  +
Sbjct: 300 TLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDR 359

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + PDVV + + + AY +  + +    +  EMI  G +PD  T ++L+     E ++   
Sbjct: 360 GMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISA 419

Query: 234 TTLVRTMHK 242
             LV  + K
Sbjct: 420 LNLVVEIQK 428



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +++  F++M +LG  P + +   +L   +K  + A+C  +  +M + G+  + +  N + 
Sbjct: 208 ESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILT 267

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +  R G   K+   L  ME+  +  D+ TYN LI+ Y R G +E    L++ +  + + 
Sbjct: 268 YVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVM 327

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+V++TS +    R    R   ++F  MID G  PD      LI A   +  +++  +L
Sbjct: 328 PDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSL 387

Query: 237 VRTM-----HKDMKTALPIYFNLYGEKG 259
           +  M     H D  T   I    YG +G
Sbjct: 388 LHEMIGIGIHPDSFTC-RILVEGYGREG 414



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 75/182 (41%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E+M+  G  P + ++  L+ +Y + G +     +   M++ G+ PD     S++    R
Sbjct: 283 LEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCR 342

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           LG+  +  ++   M       D+  YN LI  Y + G +++   L   +    + PD  T
Sbjct: 343 LGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFT 402

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
               +  Y R+      L +  E+   G        K LI +   ED+     +L+  + 
Sbjct: 403 CRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERIL 462

Query: 242 KD 243
           +D
Sbjct: 463 ED 464



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 69/165 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +F  M   G+ P +  +  L+ AY K G + +   ++++M   G+ PD+F    ++
Sbjct: 348 EAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILV 407

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YGR G+      ++  ++K         Y  LI    R       + L + +     +
Sbjct: 408 EGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQ 467

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           PD   +   + ++ R       L +  EMI+    P   T K LI
Sbjct: 468 PDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLI 512



 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/164 (19%), Positives = 67/164 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++ E +      P    +  L+ ++ ++ NV++   +  +M     KP T    S+++
Sbjct: 454 AKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIH 513

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               + +    E ++  M +     D      L+N Y + G  +K E L  S        
Sbjct: 514 CMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAQDFQFF 573

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           D  ++ S +  Y       + +E+ + M+ AG  P+  T + +I
Sbjct: 574 DSESFNSLVKVYRDVGNETKLMELQDRMLKAGFLPNSLTCRYII 617



 Score = 37.4 bits (85), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 56/126 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +  EM      PT  ++  L+    +       EG++ +M +S + PD  +  ++
Sbjct: 487 SEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRAL 546

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y + G  +K E +L +  +     D  ++N L+ +Y   G   K+  L   +     
Sbjct: 547 VNGYCKEGNADKAESLLVSFAQDFQFFDSESFNSLVKVYRDVGNETKLMELQDRMLKAGF 606

Query: 176 KPDVVT 181
            P+ +T
Sbjct: 607 LPNSLT 612


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 99/200 (49%), Gaps = 1/200 (0%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            ++A  +FE MK+ G   P + ++ +L+  Y K+G V +  G++ +M + GLK D FV +
Sbjct: 165 LAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYS 224

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++ +   G  E   E+   M +   + ++ TY+ L+   GR G   +   + + + A+
Sbjct: 225 SLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTAR 284

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++PDVV +T       +       +++ + M+  G  P   T  V+++    ED+++  
Sbjct: 285 GVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDA 344

Query: 234 TTLVRTMHKDMKTALPIYFN 253
             +V  M K  K    + +N
Sbjct: 345 FGVVEMMVKKGKKPDAVTYN 364



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  +F +MK  GI PT+  +  L+T+  +  ++ +   +  +M       D    N 
Sbjct: 483 LSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNI 542

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G  +  +E+L+ M       D  T++ILIN + + G +++  GL++ + +  
Sbjct: 543 IIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCG 602

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG-TAKVLISAC 224
             P VV + S L  Y  K    + + +  +M D     D   T+ +L   C
Sbjct: 603 HVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLC 653



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/172 (18%), Positives = 79/172 (45%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G +P   ++ +++    K   ++   G+  +M  SG++P     N+++    R    E+ 
Sbjct: 462 GFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQA 521

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             +   M   ++  D+ ++NI+I+   + G ++  + L   +    L PD VT++  +  
Sbjct: 522 RSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINR 581

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +S+  +    + ++E+M+  G  P       L+     + + E++ +L+  M
Sbjct: 582 FSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQM 633



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 4/203 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM--HKSGLKPDTFVI 112
             DA  V E M + G  P   ++  LL      G + +   +   +   K  +KPD F  
Sbjct: 341 MDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTC 400

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY-GRGGFIEKMEGLFQSLP 171
           N+++    + G+      + ++M +     +I TYN LI  Y      IE ++ L++   
Sbjct: 401 NNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALK-LWKYAV 459

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
                P+ +T++  +    + ++      +F +M D+G  P       L+++   ED +E
Sbjct: 460 ESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLE 519

Query: 232 QVTTLVRTMHKDMKTALPIYFNL 254
           Q  +L + M         + FN+
Sbjct: 520 QARSLFQEMRNVNHNVDVVSFNI 542



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 84/185 (45%), Gaps = 8/185 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF---VINSMLN 117
           +F+EM R  ++P + ++  L+    +TG   +   ++  M   G++PD     V+   L 
Sbjct: 242 LFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLC 301

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR G   K+ +++  ++KG     + TYN+++N   +   ++   G+ + +  K  KP
Sbjct: 302 KNGRAGDAIKVLDLM--VQKGEEPGTL-TYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKP 358

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY--PDGGTAKVLISACSSEDQIEQVTT 235
           D VT+ + L            +++++ ++    +  PD  T   LI     E ++     
Sbjct: 359 DAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAAR 418

Query: 236 LVRTM 240
           +  +M
Sbjct: 419 IHSSM 423



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 2/157 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  + ++M   G+ P + ++ +L     K G       V++ M + G +P T   N 
Sbjct: 271 WREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNV 330

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   +  + +    V+  M K     D  TYN L+      G I +   L++ L +++
Sbjct: 331 VVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEK 390

Query: 175 --LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
             +KPDV T  + +    ++        I   M++ G
Sbjct: 391 FHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMG 427


>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 632

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 2/189 (1%)

Query: 56  SDAHA--VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           SDA    ++EEM R+G+     +  +L     + G+V K  G + +M + G  PD    N
Sbjct: 236 SDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYN 295

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ Y R G+ E    +   M +     D+ +Y  L+    R G + +   LF  +  +
Sbjct: 296 TLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDR 355

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + PDVV + + + AY +  + +    +  EMI  G +PD  T ++L+     E ++   
Sbjct: 356 GMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISA 415

Query: 234 TTLVRTMHK 242
             LV  + K
Sbjct: 416 LNLVVEIQK 424



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +++  F++M +LG  P + +   +L   +K  + A+C  +  +M + G+  + +  N + 
Sbjct: 204 ESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILT 263

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +  R G   K+   L  ME+  +  D+ TYN LI+ Y R G +E    L++ +  + + 
Sbjct: 264 YVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVM 323

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+V++TS +    R    R   ++F  MID G  PD      LI A   +  +++  +L
Sbjct: 324 PDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSL 383

Query: 237 VRTM-----HKDMKTALPIYFNLYGEKG 259
           +  M     H D  T   I    YG +G
Sbjct: 384 LHEMIGIGIHPDSFTC-RILVEGYGREG 410



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 75/182 (41%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E+M+  G  P + ++  L+ +Y + G +     +   M++ G+ PD     S++    R
Sbjct: 279 LEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCR 338

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           LG+  +  ++   M       D+  YN LI  Y + G +++   L   +    + PD  T
Sbjct: 339 LGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFT 398

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
               +  Y R+      L +  E+   G        K LI +   ED+     +L+  + 
Sbjct: 399 CRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERIL 458

Query: 242 KD 243
           +D
Sbjct: 459 ED 460



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 69/165 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +F  M   G+ P +  +  L+ AY K G + +   ++++M   G+ PD+F    ++
Sbjct: 344 EAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILV 403

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YGR G+      ++  ++K         Y  LI    R       + L + +     +
Sbjct: 404 EGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQ 463

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           PD   +   + ++ R       L +  EMI+    P   T K LI
Sbjct: 464 PDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLI 508



 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +  EM      PT  ++  L+    +       EG++ +M +S + PD  +  ++
Sbjct: 483 SEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRAL 542

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y + G  +K E +L +  K     D  ++N L+ +Y   G   K+  L   +     
Sbjct: 543 VNGYCKEGNADKAESLLVSFAKDFQFFDSESFNSLVKVYRDVGNETKLMELQDRMLKAGF 602

Query: 176 KPDVVT 181
            P+ +T
Sbjct: 603 LPNSLT 608



 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/164 (19%), Positives = 67/164 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++ E +      P    +  L+ ++ ++ NV++   +  +M     KP T    S+++
Sbjct: 450 AKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIH 509

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               + +    E ++  M +     D      L+N Y + G  +K E L  S        
Sbjct: 510 CMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAKDFQFF 569

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           D  ++ S +  Y       + +E+ + M+ AG  P+  T + +I
Sbjct: 570 DSESFNSLVKVYRDVGNETKLMELQDRMLKAGFLPNSLTCRYII 613


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 7/205 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN+  +  +I        + +A  +  EM  +G+ PT+ S+     A +  G   +   
Sbjct: 319 SPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALE 378

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M   G+ P+T   NS L+   + GQ+EK  ++L  M       DI ++N  I+  G
Sbjct: 379 LLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACG 438

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           RG   E    L + +P   L P+V+T+ S + A  R   ++  + +F EM   G  P+  
Sbjct: 439 RGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVV 498

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   +I AC+  +Q E    L+  M
Sbjct: 499 TYNSMIDACAKGEQWELAVQLLTGM 523



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  + +EM   GI P   S+   L A +K G   K   ++  M   G  PD    NS
Sbjct: 373 WVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNS 432

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++  GR  Q+E   E+L  M       ++ TYN  I   GR    ++  GLF+ +P + 
Sbjct: 433 AIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRG 492

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+VVT+ S + A ++ + +   +++   M   G  PD  +    I AC   +Q E   
Sbjct: 493 LSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELAL 552

Query: 235 TLVRTM 240
            L++ M
Sbjct: 553 QLLKGM 558



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 7/216 (3%)

Query: 33  MLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L     +   P++  F  +I        +  A  +  EM   G+TP + ++   + A  
Sbjct: 414 LLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACG 473

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           ++    +  G+  +M   GL P+    NSM++   +  Q+E   ++LT M     A D+ 
Sbjct: 474 RSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVI 533

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +YN  I   G+G   E    L + +P +  KPD++++ S + A ++   +R  L + ++M
Sbjct: 534 SYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDM 593

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
              G  P+  +    I AC   +Q +    +++ M 
Sbjct: 594 ATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQ 629



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 99/208 (47%), Gaps = 11/208 (5%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRL---------GITPTMKSHMLLLTAYSKTGNVAKC 93
           TP++  +  +I        ++E   L         GITP + ++   + A S  G   + 
Sbjct: 142 TPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEA 201

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             ++ QM   G+ P+    NS +    +  ++E+  ++L  + +  +     TYN +I+ 
Sbjct: 202 MDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDA 261

Query: 154 YGRGG-FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
             +GG ++E M+ L Q L    +  DV++++S +AA  R + ++  +++ E+M   G  P
Sbjct: 262 CAKGGRWLEAMDLLGQML-TNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSP 320

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +  +    I AC+  D+ ++   L+R M
Sbjct: 321 NVISYNSAIDACAKGDRWKEALDLLREM 348



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 91/207 (43%), Gaps = 7/207 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+  +  +I        + +A  +F EM   G++P + ++  ++ A +K         
Sbjct: 459 TPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQ 518

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++  M   G+ PD    NS +   G+  Q+E   ++L  M       DI +YN  +    
Sbjct: 519 LLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACA 578

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G   +  GL + +    L P+ V++ + + A  + + +   + I +EM   G  P+  
Sbjct: 579 KSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLI 638

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T    I AC+ + + ++   L+  + +
Sbjct: 639 TYSAAIDACAKQGRWKEAVDLLTDLRR 665



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 97/217 (44%), Gaps = 7/217 (3%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL  +  +I        + +A  + EE+   G  P+ +++  ++ A +K G   +   +
Sbjct: 215 PNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDL 274

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + QM  + +  D    +S++   GR  ++++  ++L  M     + ++ +YN  I+   +
Sbjct: 275 LGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAK 334

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           G   ++   L + +    L P V+++ S  AA +    +   LE+ +EM   G  P+  +
Sbjct: 335 GDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTIS 394

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
               + AC+   Q E+   L+R M         I FN
Sbjct: 395 YNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFN 431



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/205 (18%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP++  +  +I        + +A  + E+M   G+ P + ++   + A +K     +   
Sbjct: 179 TPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMD 238

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ ++ + G  P T   N +++   + G++ +  ++L  M      AD+ +Y+ +I   G
Sbjct: 239 LLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACG 298

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           RG   ++   L + +  + + P+V+++ S + A ++   ++  L++  EM   G  P   
Sbjct: 299 RGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVI 358

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           +     +AC+   +  +   L++ M
Sbjct: 359 SYNSATAACAVNGRWVEALELLKEM 383



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            +++   SG   DT   N  +       Q+     +L  M       D+ TYN  I    
Sbjct: 97  ALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACS 156

Query: 156 RGG-FIEKMEGLFQSL-PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +GG + E M+ L Q + P + + PDVVT+ S +AA S    ++  +++ E+M+  G  P+
Sbjct: 157 KGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPN 216

Query: 214 GGTAKVLISACSSEDQIEQVTTLV 237
             T    I AC+   + E+   L+
Sbjct: 217 LITYNSAIGACAKGRRWEEAMDLL 240



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 62/131 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + + M   G  P + S+   +TA +K+G   +  G++  M   GL P+T    + ++  G
Sbjct: 554 LLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACG 613

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  Q++    +L  M+      ++ TY+  I+   + G  ++   L   L  + L PD  
Sbjct: 614 KGEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQ 673

Query: 181 TWTSRLAAYSR 191
           T+ + ++A+ R
Sbjct: 674 TYLTVISAFQR 684



 Score = 41.2 bits (95), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 30/159 (18%), Positives = 68/159 (42%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G+ P + S+   + A  K         ++  M   G KPD    NS +    + G+
Sbjct: 523 MPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGR 582

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           + +   +L  M       +  +Y   I+  G+G   +    + + +      P+++T+++
Sbjct: 583 WREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSA 642

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            + A +++  ++  +++  ++   G  PD  T   +ISA
Sbjct: 643 AIDACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISA 681


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 94/186 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +  EM++ G++P   ++ LL+ AY   G       V+ +M    ++P++FV + 
Sbjct: 357 LKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSR 416

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y   G+++K  +VL  M+      D   YN++I+ +G+   ++     F  + ++ 
Sbjct: 417 LLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEG 476

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PD VTW + +  + +   +    E+FE M   GC P   T  ++I++   +++ + + 
Sbjct: 477 IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMK 536

Query: 235 TLVRTM 240
            L+  M
Sbjct: 537 RLLGKM 542



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D   +  +MK  GI P + +H  L+  Y K+G        + +M   GLKP + + N+
Sbjct: 532 WDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNA 591

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y + G  E+       M        +   N LIN +G      +   + Q +    
Sbjct: 592 LINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENG 651

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +KPDVVT+T+ + A  R   +++   ++EEMI +GC PD     +L SA
Sbjct: 652 VKPDVVTYTTLMKALIRVDKFQKVPGVYEEMIMSGCKPDRKARSMLRSA 700



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 11/225 (4%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN FVF  + + Y     +     V +EMK +G+ P  + + +++  + K   +      
Sbjct: 409 PNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTT 468

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M   G++PD    N++++ + + G+    EE+  AME+       +TYNI+IN YG 
Sbjct: 469 FDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGD 528

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               + M+ L   + ++ + P+VVT T+ +  Y +   +   +E  EEM   G  P    
Sbjct: 529 QERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTM 588

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD-MKT---ALPIYFNLYGE 257
              LI+A +     EQ     R M  D +K    AL    N +GE
Sbjct: 589 YNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGE 633



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE M+R G  P   ++ +++ +Y         + ++ +M   G+ P+     ++++
Sbjct: 500 AEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVD 559

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YG+ G+F    E L  M+        + YN LIN Y + G  E+    F+ + +  LKP
Sbjct: 560 VYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP 619

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            ++   S + A+   +       + + M + G  PD  T   L+ A    D+ ++V  + 
Sbjct: 620 SLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPGVY 679

Query: 238 RTM 240
             M
Sbjct: 680 EEM 682



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 78/153 (50%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G++    + + +++A + +G   + E +  ++ +SG+KP T   N++L  Y + G  +  
Sbjct: 301 GLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDA 360

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E +++ MEK   + D  TY++LI+ Y   G  E    + + +    ++P+   ++  LA 
Sbjct: 361 ELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAG 420

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           Y  +  +++  ++ +EM   G  PD     V+I
Sbjct: 421 YRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVI 453



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ HT  + V+  S  F+DA    EEMK +G+ P+   +  L+ AY++ G   +      
Sbjct: 551 VVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFR 610

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M   GLKP    +NS++N +G   +  +   VL  M++     D+ TY  L+    R  
Sbjct: 611 VMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVD 670

Query: 159 FIEKMEGLFQSLPAKRLKPD 178
             +K+ G+++ +     KPD
Sbjct: 671 KFQKVPGVYEEMIMSGCKPD 690



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 80/186 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+ M   GI P   +   L+  + K G     E +   M + G  P     N M+N
Sbjct: 465 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMIN 524

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG   +++ M+ +L  M+      ++ T+  L+++YG+ G         + + +  LKP
Sbjct: 525 SYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKP 584

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
               + + + AY+++ L  + +  F  M   G  P       LI+A   + +  +   ++
Sbjct: 585 SSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVL 644

Query: 238 RTMHKD 243
           + M ++
Sbjct: 645 QYMKEN 650



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/183 (16%), Positives = 76/183 (41%), Gaps = 2/183 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC--EGVINQMHKSGLKPDTFVINSMLNL 118
           +   M++ G      ++ L++ + ++   +     + +  ++ +  L+ D  ++N ++  
Sbjct: 221 LISRMRQDGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLYKEIERDKLELDVQLVNDIIMG 280

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           + + G   +  ++L   +    +A  +T   +I+     G   + E LF+ L    +KP 
Sbjct: 281 FAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPR 340

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
              + + L  Y +    +    +  EM   G  PD  T  +LI A  +  + E    +++
Sbjct: 341 TKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLK 400

Query: 239 TMH 241
            M 
Sbjct: 401 EME 403



 Score = 37.7 bits (86), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/180 (14%), Positives = 77/180 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +++E++R  +   ++    ++  ++K+G+ ++   ++     +GL   T  + S+++   
Sbjct: 258 LYKEIERDKLELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALA 317

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+  + E +   + +         YN L+  Y + G ++  E +   +  + + PD  
Sbjct: 318 NSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEH 377

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T++  + AY     +     + +EM      P+      L++      + ++   +++ M
Sbjct: 378 TYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEM 437


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 90/192 (46%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  M  L +  T+ S  ++L    K G+V     +++++   G+K +    N+ +  Y +
Sbjct: 213 FRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFK 272

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
                 + E+LT MEK   A ++ TY +LI+ +   G IE+ + LF+ +  K ++ DV  
Sbjct: 273 RLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYV 332

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +TS ++   R    +R L +F+EM D G  P   T   LI       Q+E    LV  M 
Sbjct: 333 YTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ 392

Query: 242 KDMKTALPIYFN 253
                  P+ FN
Sbjct: 393 GKGIDLNPVIFN 404



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 79/173 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +   M   G++P   S   L+  Y K GN  + + V  +M + G  P+    N +
Sbjct: 452 DEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVL 511

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y + G  ++  ++   +E      D+ T   LI+     G ++    LF  +P + L
Sbjct: 512 IDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL 571

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            P+VVT+T+ ++  S+        ++++EM + G  PD      L+ +  S +
Sbjct: 572 VPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSAE 624



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 35/220 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS--- 114
           A  +  EM+  GI         L+  Y ++G V +   +   M K GL+ D F  NS   
Sbjct: 384 AQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIAS 443

Query: 115 --------------------------------MLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
                                           ++++Y + G F + + V   ME+     
Sbjct: 444 GLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVP 503

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           +I TYN+LI+ Y + G +++   L   L  + L PDV T TS +            L++F
Sbjct: 504 NIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLF 563

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +EM   G  P+  T   +IS  S + + E+   L   M +
Sbjct: 564 DEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKE 603



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 88/211 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FEEM+  GI   +  +  +++   ++GNV +   + ++M   GL P      +++
Sbjct: 313 EAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALI 372

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + GQ E  + ++  M+      +   +N LI+ Y   G +++   L   +  K L+
Sbjct: 373 HGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLE 432

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DV  + S  +   +         +   M++ G  P+  +   LI     E    +   +
Sbjct: 433 SDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRV 492

Query: 237 VRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
            R M +       I +N+  +    R N+ +
Sbjct: 493 FREMEEKGNVPNIITYNVLIDGYSKRGNMKE 523


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 43  TPNLFVF--IFSIYF-SD----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN F++  I   YF SD      +  + M   G+ P  + + +++   S +G++     
Sbjct: 590 NPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVS 649

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V++ + K+GL PD+ +  S+++ + +    EK   +L  M K      IS YN LI+ + 
Sbjct: 650 VLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFC 709

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   I     +F S+  K L P+ VT+T+ +  Y +    R  ++++ EM+  G  PD  
Sbjct: 710 KSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAF 769

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
              VL + CS+   ++Q   +   M
Sbjct: 770 VYSVLAAGCSNSGDLQQALFITEEM 794



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 89/184 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  EM++ GI+P + ++ +++    + G   +  G++ QM   GLKP+ FV   ++
Sbjct: 436 EAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLI 495

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G F    E L  M + +   D+  YN LI      G +++    +  +  K  +
Sbjct: 496 SGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQ 555

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+   +  YS      +  ++  +M+++G  P+      ++      D +E+V++ 
Sbjct: 556 PNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSST 615

Query: 237 VRTM 240
           +++M
Sbjct: 616 LKSM 619



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 4/160 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  + +EM   G+ P   ++  L+    K G + +   ++ QM K G   DT   N  
Sbjct: 365 DEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYN-- 422

Query: 116 LNLYGRLGQFEKMEE--VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           L + G L Q  K E   +L  M KG  + ++ TY+I+IN   + G  E+  GL + + A 
Sbjct: 423 LVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIAD 482

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            LKP+   +   ++ Y R+  +    E  ++M      PD
Sbjct: 483 GLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPD 522



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 8/194 (4%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP+L+ +   I          +A   ++EM   G  P   ++  L+  YS  GN+ K E 
Sbjct: 520 TPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQ 579

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +++QM  SGL P+ F+   +L  Y +    EK+   L +M +     D   Y I+I+   
Sbjct: 580 LLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLS 639

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             G ++    +   +    L PD + + S ++ + +     + + + +EM   G  P   
Sbjct: 640 SSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGIS 699

Query: 216 TAKVLISA-CSSED 228
               LI   C S+D
Sbjct: 700 CYNALIDGFCKSDD 713



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 82/186 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   G+ P +  +  L+  + + GN  +   ++ +M  +G++P+    ++++ 
Sbjct: 332 AKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIR 391

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +LG+  +   +L  M K  Y AD  TYN++I  + R    E+   L   +    + P
Sbjct: 392 GLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISP 451

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V T++  +    +     R   + E+MI  G  P+      LIS    E         +
Sbjct: 452 NVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETL 511

Query: 238 RTMHKD 243
           + M ++
Sbjct: 512 KKMTRE 517



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 17/222 (7%)

Query: 37  FLLLQH------TPNLFVFIFSIYFSD---------AHAVFEEMKRLGITPTMKSHMLLL 81
           FLLL        +PN  V+ +SI  +          A  + E+M   G+ P    +  L+
Sbjct: 438 FLLLNEMRKGGISPN--VYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLI 495

Query: 82  TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141
           + Y + G+ +     + +M +  L PD +  NS++     +G+ ++  E    M +  + 
Sbjct: 496 SGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQ 555

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            +  TY  LI+ Y   G +EK E L   +    L P+   +   L  Y +     +    
Sbjct: 556 PNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSST 615

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            + M++ G  PD     ++I   SS   ++   +++  + K+
Sbjct: 616 LKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKN 657



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 90/200 (45%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  GI+P + ++  L+ AY K  ++   + V+ +M ++G   +    N+++    R G 
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E+       ME      D  TY  +IN   + G  ++ + L   +    L P+VV +++
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYST 353

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
            +  + R+       +I +EM  AG  P+  T   LI       ++ + + +++ M K  
Sbjct: 354 LIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIG 413

Query: 245 KTALPIYFNLYGEKGVARSN 264
             A  + +NL  E  + + N
Sbjct: 414 YMADTMTYNLVIEGHLRQHN 433



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 81/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M ++G      ++ L++  + +  N  +   ++N+M K G+ P+ +  + ++N
Sbjct: 402 ASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIIN 461

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G+ E+   +L  M       +   Y  LI+ Y R G         + +  + L P
Sbjct: 462 GLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTP 521

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+  + S +   S        +E ++EM++ G  P+  T   LI   S    +E+   L+
Sbjct: 522 DLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLL 581

Query: 238 RTM 240
             M
Sbjct: 582 HQM 584



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 8/216 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN FV+  + S Y     FS A    ++M R  +TP +  +  L+   S  G + +    
Sbjct: 486 PNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEY 545

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M + G +P+ F    +++ Y   G  EK E++L  M       +   Y  ++  Y +
Sbjct: 546 YDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFK 605

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +EK+    +S+  K L PD   +   +   S     +  + +   +   G  PD   
Sbjct: 606 SDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLI 665

Query: 217 AKVLISA-CSSEDQIEQVTTLVRTMHKDMKTALPIY 251
              LIS  C + D  + V  L     K ++  +  Y
Sbjct: 666 YGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCY 701



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 66/162 (40%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+  Y KTG V     V+  M   GL P     N +L    R    + + +V   ME  
Sbjct: 178 VLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGA 237

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
             + D+ TY+ LI  Y +   +E  + + + +       +VVT+ + +    R       
Sbjct: 238 GISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEA 297

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
               +EM D G  PDG T   +I+      + +Q   L+  M
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEM 339



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 1/133 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S   S A  +F  +   G+ P   ++  L+  Y K G++     + N+M   G+ PD
Sbjct: 708 FCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPD 767

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            FV + +       G  ++   +   M    YA  IS++N L++ + + G +++      
Sbjct: 768 AFVYSVLAAGCSNSGDLQQALFITEEMIARGYAI-ISSFNTLVHGFCKRGKLQETVKFLH 826

Query: 169 SLPAKRLKPDVVT 181
            +  K + P ++T
Sbjct: 827 VMMDKDIVPSLLT 839


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G+ P + ++  L+ +Y  +    +    + QM   GL+P T V  ++ N Y 
Sbjct: 451 LLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYA 510

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  E+  EV  +MEK     ++S  N+LIN +G  G   +   +F  +    + PDVV
Sbjct: 511 KRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPDVV 570

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+T+ + A  + +   +  +++E+M+ AGC PD     +L SA
Sbjct: 571 TYTTLMKALIKAEQLDQVPDVYEQMVRAGCTPDDMAKDMLRSA 613



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + ++M    I P      +L+  Y K G + +      QM K G KPD    NS++  + 
Sbjct: 346 LLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHC 405

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G   +  ++L  M++      + TYNI++N  G     ++M  L   +  K L P+VV
Sbjct: 406 RAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVV 465

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T+ + +Y   K YR   E  ++M   G  P       L ++ +     EQ   + ++M
Sbjct: 466 TYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSM 525

Query: 241 HKD 243
            KD
Sbjct: 526 EKD 528



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 36/244 (14%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA A + EMK       +++   LL+AY++   + + E ++     +GLK  TF    
Sbjct: 235 LDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGL 294

Query: 115 MLNLYGRLGQFEKMEEVLTAME-------------------------------KGSYAAD 143
           +++ Y R G+ ++ +     M+                               K  YA++
Sbjct: 295 LIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASN 354

Query: 144 IS----TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           I      +NILI+ YG+ G + +    F  +  +  KPDVVTW S + A+ R  L    L
Sbjct: 355 IKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEAL 414

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KDMKTALPIYFNLYGEK 258
           ++ ++M +  C P   T  ++++A    ++ +++  L+  M  K +   +  Y  L    
Sbjct: 415 DLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSY 474

Query: 259 GVAR 262
           G ++
Sbjct: 475 GTSK 478



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 103/250 (41%), Gaps = 39/250 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--------- 107
           +A  +F+++K+LG++P   ++  ++   ++   +     ++NQM  SG +P         
Sbjct: 96  EAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRGSGFQPDNVNYTLVF 155

Query: 108 ---------------------------DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
                                      DT + N ++N Y R G  +K  + +  M+    
Sbjct: 156 QACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPDKAFQYMGLMQACDL 215

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             D+ +Y+ LI        ++  E  +  + +K  K ++ T  + L+AY+RK L  +  +
Sbjct: 216 VPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEK 275

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGV 260
           + ++  DAG      +  +LI A S   +++Q       M  +    +P    +Y    V
Sbjct: 276 LMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVE---NVPANAFIYSRLMV 332

Query: 261 ARSNLGQYIG 270
           A  N  Q+ G
Sbjct: 333 AYRNARQWDG 342



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F+F   I           A   F +M + G  P + +   L+ A+ + G + +   +
Sbjct: 357 PNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDL 416

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + QM +    P     N +LN  G   ++++M  +L  M       ++ TY  L++ YG 
Sbjct: 417 LKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGT 476

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
                +     + + ++ L+P    + +   +Y+++ L  + +E+F+ M   G   +   
Sbjct: 477 SKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSM 536

Query: 217 AKVLISA 223
             +LI+A
Sbjct: 537 LNLLINA 543



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/179 (16%), Positives = 75/179 (41%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+   + P ++S+  L+        +   E    +M     K +   +N++L+ Y R   
Sbjct: 210 MQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSL 269

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E++E+++   E         +Y +LI+ Y R G +++ +  F ++  + +  +   ++ 
Sbjct: 270 LEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSR 329

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            + AY   + +   + + ++M  +   P+     +LI       ++ Q       M K+
Sbjct: 330 LMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKE 388


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 89/184 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AVF EM + G+ P + +   L+ A  + GN+ +   ++ QM + GL+ + F   +++
Sbjct: 278 EALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALI 337

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R G  +     +  M +      +  YN+LIN Y + G +++   L   + AK +K
Sbjct: 338 DGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMK 397

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+++ L+ Y +        E+  +M+  G  PD  T   LI     E ++     L
Sbjct: 398 PDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACEL 457

Query: 237 VRTM 240
              M
Sbjct: 458 FEKM 461



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 8/193 (4%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  + +  DA    +EM+   I P++  + +L+  Y K G + +   +I++M   G+KPD
Sbjct: 340 FCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPD 399

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG--- 165
               +++L+ Y ++G  +   E+   M K     D  TY+ LI    RG   E+  G   
Sbjct: 400 VVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLI----RGLCEERRLGDAC 455

Query: 166 -LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            LF+ +    L+PD  T+T+ +  + ++   ++ L + +EMI  G  PD  T  VLI   
Sbjct: 456 ELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGL 515

Query: 225 SSEDQIEQVTTLV 237
           S   + ++   L+
Sbjct: 516 SKSARTKEAQRLL 528



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 74/149 (49%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V ++M+  G  P + ++  L+ A+ + G V   E ++  M + G++P     N+++N   
Sbjct: 177 VGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLC 236

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ E   ++   M +     D  +YN L++ Y + G + +   +F  +  K + PDVV
Sbjct: 237 KAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVV 296

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           T+TS + A  R     R + +  +M + G
Sbjct: 297 TFTSLIHAMCRAGNLERAVALVGQMRERG 325



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 81/188 (43%), Gaps = 1/188 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  G+ P++ +   ++    K G +     + ++M + GL PD    N++++ Y + G 
Sbjct: 216 MREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGC 275

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   V   M +     D+ T+  LI+   R G +E+   L   +  + L+ +  T+T+
Sbjct: 276 LHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTA 335

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KD 243
            +  + R       L   +EM +    P      VLI+      ++++   L+  M  K 
Sbjct: 336 LIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKG 395

Query: 244 MKTALPIY 251
           MK  +  Y
Sbjct: 396 MKPDVVTY 403



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/201 (16%), Positives = 85/201 (42%), Gaps = 15/201 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +FE+M +LG+ P   ++  L+  + K GNV K   + ++M K G+ PD    + 
Sbjct: 451 LGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSV 510

Query: 115 MLNLYGRLGQFEKMEEVL---------------TAMEKGSYAADISTYNILINIYGRGGF 159
           +++   +  + ++ + +L                A+      A+  +   L+  +   G 
Sbjct: 511 LIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGL 570

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           + + + ++QS+  +  K D   ++  +  + R     + L   ++++  G  P+  +   
Sbjct: 571 MNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTIS 630

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           L+     E    +   +++ +
Sbjct: 631 LVRGLFEEGMTVEADNVIQEL 651


>gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Cucumis sativus]
          Length = 608

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 97/186 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V+E++   G  P   ++   + AY + G  +K E +  +M + G        +S
Sbjct: 381 YEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSS 440

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++YG+ G+ +    +L  M++     ++  YNIL+ ++G+   ++++E L++ +  K+
Sbjct: 441 LISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKK 500

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD V++TS ++AY +   + +C + + E    G   D     +++   S   +++++ 
Sbjct: 501 IAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELV 560

Query: 235 TLVRTM 240
            L+R M
Sbjct: 561 KLLRDM 566



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 63/148 (42%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M++ GI      +  L+  ++    V   E + N+     L  D  +   ++ +Y +
Sbjct: 283 FRDMRKKGIAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQ 342

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  EK  E++  M+          +  ++N Y      E    +++ L     +P  VT
Sbjct: 343 QGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVT 402

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           + S + AY R  LY +  +IF EM + G
Sbjct: 403 YASAINAYCRVGLYSKAEDIFGEMEEKG 430



 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/132 (18%), Positives = 60/132 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +MK  G  P +  + +L+  + K  N+ + E +  +M +  + PD     S++
Sbjct: 453 DAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSII 512

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +  +FEK E+            D +   I++ ++ +   ++++  L + +  +  +
Sbjct: 513 SAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTR 572

Query: 177 PDVVTWTSRLAA 188
            D   + + L A
Sbjct: 573 LDERLYRTALNA 584


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 2/217 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +  EM+  G+ PT+++   L+ AY +TG + KC  V+++M ++GLKP+     S
Sbjct: 426 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 485

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + + G+  +   +L  M       +   YN +I+ Y   G  ++   L + + +  
Sbjct: 486 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 545

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P +VT+   +     +       EI   + +    PD  +   LISAC     I++  
Sbjct: 546 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 605

Query: 235 TLVRTMHK-DMKTALPIYFNLY-GEKGVARSNLGQYI 269
            L + MHK  +K+ +  Y  L  G  G  R N  +Y+
Sbjct: 606 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 642



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 86/199 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  V + +   G+ PT   +  L+  Y +TG +        QM    +KPD    N++
Sbjct: 357 SIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL 416

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +  +    +++L  M+       + T+N LI+ YGR G +EK   +   +    L
Sbjct: 417 INGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 476

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+VV++ S + A+ +       + I ++M      P+      +I A       +Q   
Sbjct: 477 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 536

Query: 236 LVRTMHKDMKTALPIYFNL 254
           LV  M  +  +   + +NL
Sbjct: 537 LVEKMKSNGISPSIVTYNL 555



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 84/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A + F +MK   I P   ++  L+    K   +   + ++ +M  +G+ P     N++++
Sbjct: 394 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 453

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR GQ EK   VL+ M++     ++ +Y  ++N + + G I +   +   +  K + P
Sbjct: 454 AYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLP 513

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   + + + AY       +   + E+M   G  P   T  +LI    ++ QI +   ++
Sbjct: 514 NAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 573

Query: 238 RTM 240
            ++
Sbjct: 574 NSL 576



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 13/224 (5%)

Query: 49  FIFSIYFS------DAHA---VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           F +SI F       D+ A   +F +  + G+T    +  +LL    K G V+  E V+  
Sbjct: 306 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 365

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +  +GL P   + N+++N Y + G+ E        M+      D  TYN LIN   +   
Sbjct: 366 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 425

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I   + L   +    + P V T+ + + AY R     +C  +  EM + G  P+  +   
Sbjct: 426 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 485

Query: 220 LISA-CSSEDQIEQVTTLVRTMHKDMKTALPIY---FNLYGEKG 259
           +++A C +    E V  L    HKD+     +Y    + Y E G
Sbjct: 486 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHG 529



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 24  NYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA 83
           + LP    +  I    ++H PN   FI            E+MK  GI+P++ ++ LL+  
Sbjct: 510 DVLPNAQVYNAIIDAYVEHGPNDQAFIL----------VEKMKSNGISPSIVTYNLLIKG 559

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                 +++ E +IN +    L PD    N++++     G  +K  ++   M K    + 
Sbjct: 560 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 619

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TY+ LI+  G  G + +ME L+Q +    + P        + AYS+     +  ++ +
Sbjct: 620 VRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRK 679

Query: 204 EMI 206
           EM+
Sbjct: 680 EML 682



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 81/189 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +  A+ +EM    + P   ++ +L    S+ G+      +  +  K+G+    +  + 
Sbjct: 286 MGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSI 345

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN   + G+    EEVL ++           YN LIN Y + G +E     F  + ++ 
Sbjct: 346 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 405

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPD +T+ + +    + +      ++  EM D G  P   T   LI A     Q+E+  
Sbjct: 406 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 465

Query: 235 TLVRTMHKD 243
            ++  M ++
Sbjct: 466 IVLSEMQEN 474



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 1/182 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINS 114
           +D    F  +   G  P   +    + A    G++ +  G++ +M + G  P + F  N 
Sbjct: 146 ADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNV 205

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    R G+     EV   M + +   +  TYN +I+ + +GG +E    L   +    
Sbjct: 206 VIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG 265

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKP+ +T+   L+   R         + +EM      PDG T  +L    S     + + 
Sbjct: 266 LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAML 325

Query: 235 TL 236
           +L
Sbjct: 326 SL 327



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+EM    + P   ++  ++  + K G++     + +QM   GLKP+    N +L
Sbjct: 218 DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLL 277

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G+  +   +L  M       D  TY+IL +   R G  + M  LF     K LK
Sbjct: 278 SGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF----GKYLK 333

Query: 177 PDVV----TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
             V     T +  L    +        E+ + +++AG  P
Sbjct: 334 NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 373



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 72/181 (39%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           ++M   G+ P   ++ +LL+   + G + +   ++++M    + PD F  + + +   R 
Sbjct: 259 DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 318

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  + M  +     K        T +IL+N   + G +   E + QSL    L P  V +
Sbjct: 319 GDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 378

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + +  Y +          F +M      PD  T   LI+     ++I     L+  M  
Sbjct: 379 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQD 438

Query: 243 D 243
           +
Sbjct: 439 N 439



 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +   +    + P   S+  L++A    GN+ K   +  +MHK G+K      + 
Sbjct: 566 ISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQ 625

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G  G+  +ME +   M + +     + +NI++  Y + G   K E L + +  KR
Sbjct: 626 LISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKR 685

Query: 175 LKPD 178
              D
Sbjct: 686 NNHD 689



 Score = 38.1 bits (87), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 1/170 (0%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P++ S  LLL A    G  A        +  +G +PDTF  N  +      G   +   +
Sbjct: 127 PSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGM 186

Query: 132 LTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           L  M + G+   +  +YN++I    R G       +F  +  + + P+ +T+ + +  + 
Sbjct: 187 LRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHI 246

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +         + ++M+  G  P+  T  VL+S      ++ + + L+  M
Sbjct: 247 KGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 296


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  F     ++ A   FE MK   I P   +  +++    K G       ++N
Sbjct: 258 LVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLN 317

Query: 99  QMHKSGLK--PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M +  ++  PD     S+++ Y   GQ E  + V   M       +I +YN L+  Y  
Sbjct: 318 SMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYAS 377

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +  G+F+ L    L+PDVV++T+ L AY R     +  E+F EM    C P+  +
Sbjct: 378 HGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVS 437

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S    ++  +L+  M KD
Sbjct: 438 YNALIDAYGSAGMFKEAISLLHEMEKD 464



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 40  LQHTPNLFVF---IFSIYF----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           +Q +P++  +   I S Y      +  AVF+ M   G+ P + S+  LL AY+  G   +
Sbjct: 324 VQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTE 383

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
             G+   + ++GL+PD     ++LN YGR  Q EK  EV   M K S   +  +YN LI+
Sbjct: 384 AFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALID 443

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            YG  G  ++   L   +    + PDVV+ ++ LAA  R
Sbjct: 444 AYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGR 482



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 88/168 (52%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F+ +K+ G+ P + S+  LL AY ++    K   V N+M K+  KP+    N++
Sbjct: 382 TEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNAL 441

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ YG  G F++   +L  MEK     D+ + + L+   GR     K++ + ++   + +
Sbjct: 442 IDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGI 501

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + ++V + S + +Y     Y + L+++  M+ +   PD  T  +LIS 
Sbjct: 502 ELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISG 549



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 82/172 (47%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           KR+  +P + ++  ++ +Y   G V  C+ V + M   G+KP+    N++L  Y   G  
Sbjct: 322 KRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMH 381

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
            +   +   +++     D+ +Y  L+N YGR    EK   +F  +     KP+ V++ + 
Sbjct: 382 TEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNAL 441

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + AY    +++  + +  EM   G  PD  +   L++AC    Q  ++ T++
Sbjct: 442 IDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVL 493



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM++    P   S+  L+ AY   G   +   ++++M K G+ PD   I+++L 
Sbjct: 419 AREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLA 478

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR  Q  K++ VL A +      +I  YN  I  Y   G  EK   L+ ++ A  + P
Sbjct: 479 ACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNP 538

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           D VT+   ++   +   Y   L+ FE+M+D
Sbjct: 539 DAVTYNILISGLCKLGKYAESLKFFEDMVD 568



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 35/222 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A ++  EM++ GI P + S   LL A  +     K + V+      G++ +    NS
Sbjct: 451 FKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNS 510

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-------FIEKM---- 163
            +  Y   G +EK  ++   M   +   D  TYNILI+   + G       F E M    
Sbjct: 511 GIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLR 570

Query: 164 ------------------------EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                                   E  F ++ A    PDV+T+T+ + AY+    +    
Sbjct: 571 IPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVW 630

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           ++F+EM      PD      L+ A +  +Q  +V  L++ MH
Sbjct: 631 DLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQLMKFMH 672



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 2/168 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + ++M R  I P+  ++  ++ A    GN  K   +  +M ++G+ PD    N +L+ + 
Sbjct: 210 IMDDMLRAAIPPSRATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFK 269

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK--PD 178
              Q+ K       M+  + A D  T NI+I+   + G       L  S+  KR++  PD
Sbjct: 270 NGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPD 329

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           VVT+TS + +Y        C  +F+ M+  G  P+  +   L+ A +S
Sbjct: 330 VVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYAS 377



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 73/164 (44%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   V +  G+  +M +   KPD  + NS++N + R G +     ++  M + 
Sbjct: 158 MMIQLHARHNQVDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDMLRA 217

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     +TYN ++N  G  G  +K   L + +    + PD+VT    L+A+     Y + 
Sbjct: 218 AIPPSRATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKA 277

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
              FE M  A   PD  T  ++I       Q      L+ +M +
Sbjct: 278 TGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMRE 321



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 123 GQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           G  E    V   M+ + +Y A    Y ++I ++ R   +++  GLF  +   R KPD   
Sbjct: 131 GSLEHAVYVFCWMKNQENYCARNDIYGMMIQLHARHNQVDQARGLFFEMQEWRCKPDADI 190

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + S + A++R  L+R  + I ++M+ A   P   T   +++AC +    ++   L + M 
Sbjct: 191 YNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYNNVVNACGAAGNWKKALELCKKMI 250

Query: 242 KD 243
           ++
Sbjct: 251 RN 252



 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 14/200 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  ++  M    + P   ++ +L++   K G  A+       M    +     V +S
Sbjct: 521 YEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSS 580

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y +  +  + E     M+      D+ TY  +I  Y   G    +  LF+ +    
Sbjct: 581 LICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNA 640

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD +  +S + A ++   Y R L++ + M D     +      +I++CS         
Sbjct: 641 ILPDAIICSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQKAYFEIIASCS--------- 691

Query: 235 TLVRTMHKDMKTALPIYFNL 254
                M +D KTA  I  +L
Sbjct: 692 -----MLRDWKTASEIIEHL 706


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 90/192 (46%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  M  L +  T+ S  ++L    K G+V     +++++   G+K +    N+ +  Y +
Sbjct: 217 FRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFK 276

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
                 + E+LT MEK   A ++ TY +LI+ +   G IE+ + LF+ +  K ++ DV  
Sbjct: 277 RLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYV 336

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +TS ++   R    +R L +F+EM D G  P   T   LI       Q+E    LV  M 
Sbjct: 337 YTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ 396

Query: 242 KDMKTALPIYFN 253
                  P+ FN
Sbjct: 397 GKGIDLNPVIFN 408



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 80/174 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +   M   G++P   S   L+  Y K GN  + + V  +M + G  P+    N +
Sbjct: 456 DEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVL 515

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y + G  ++  ++   +E      D+ T   LI+     G ++    LF  +P + L
Sbjct: 516 IDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL 575

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
            P+VVT+T+ ++  S+        ++++EM + G  PD      L+ +  S D+
Sbjct: 576 VPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSADE 629



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 35/220 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS--- 114
           A  +  EM+  GI         L+  Y ++G V +   +   M K GL+ D F  NS   
Sbjct: 388 AQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIAS 447

Query: 115 --------------------------------MLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
                                           ++++Y + G F + + V   ME+     
Sbjct: 448 GLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVP 507

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           +I TYN+LI+ Y + G +++   L   L  + L PDV T TS +            L++F
Sbjct: 508 NIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLF 567

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +EM   G  P+  T   +IS  S + + E+   L   M +
Sbjct: 568 DEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKE 607



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 88/211 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FEEM+  GI   +  +  +++   ++GNV +   + ++M   GL P      +++
Sbjct: 317 EAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALI 376

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + GQ E  + ++  M+      +   +N LI+ Y   G +++   L   +  K L+
Sbjct: 377 HGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLE 436

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DV  + S  +   +         +   M++ G  P+  +   LI     E    +   +
Sbjct: 437 SDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRV 496

Query: 237 VRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
            R M +       I +N+  +    R N+ +
Sbjct: 497 FREMEEKGNVPNIITYNVLIDGYSKRGNMKE 527


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 90/167 (53%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +M   GI P + ++  LL+ + K G       +  +M   G KP+    N+++
Sbjct: 87  DALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALI 146

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++G  G+F +M +V   ++    + DI T+N L++++G+ G   ++ G+F+ +      
Sbjct: 147 KMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFV 206

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           P+  T+ + +++YSR   + + + +++ M++AG  PD  +   +++A
Sbjct: 207 PERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAA 253



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 91/183 (49%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+ EE+    I P       L+   SK   + + E    ++ + G  PD   +N+M+++Y
Sbjct: 300 ALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIY 359

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR     K  E+L  M++G +   ++TYN L+ +Y R    E+ E + + + AK ++PD+
Sbjct: 360 GRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDI 419

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +++ + + AY R    R    +  EM ++G  PD  T    I++ +++    +   +V  
Sbjct: 420 ISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCY 479

Query: 240 MHK 242
           M K
Sbjct: 480 MIK 482



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 88/186 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +    F E+++ G +P + +   +++ Y +   VAK   +++ M + G  P     NS++
Sbjct: 332 ETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLM 391

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +Y R   FE+ EE+L  +       DI +YN +I  Y R G +     +   +      
Sbjct: 392 YMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPA 451

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD++T+ + +A+Y+   ++   +++   MI  GC P+  T   ++      ++ ++ +  
Sbjct: 452 PDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMF 511

Query: 237 VRTMHK 242
           V  + K
Sbjct: 512 VNNLRK 517



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 7/216 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++   VFE++K    +P + +   LL+ + + G  ++  GV  +M ++G  P+    N+
Sbjct: 155 FTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNT 214

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G F++   V   M +     D+S+YN ++    RGG  ++ E +   +   R
Sbjct: 215 LISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGR 274

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+ +T+ S L AY+  K   R   + EE+      P     K L+   S  D + +  
Sbjct: 275 CKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETE 334

Query: 235 TLV-----RTMHKDMKTALPIYFNLYGEKG-VARSN 264
                   R    D+ T L    ++YG +  VA++N
Sbjct: 335 RAFLELRQRGFSPDI-TTLNAMVSIYGRRQMVAKAN 369



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 107/229 (46%), Gaps = 8/229 (3%)

Query: 21  WNFNYLPYPSHFMLINFLLLQH-TPNLFVFI-----FSIYFSDAHAV--FEEMKRLGITP 72
           W+   L  P    L N ++ +   P++F +      F     D  AV  FEEM+  G  P
Sbjct: 78  WSHGRLSPPDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKP 137

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL 132
            + +   L+  +   G   +   V   +      PD    N++L+++G+ G   ++  V 
Sbjct: 138 NICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVF 197

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M++  +  +  T+N LI+ Y R G  ++   +++ +    + PD+ ++ + LAA +R 
Sbjct: 198 KEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARG 257

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            L+++  ++  EM D  C P+  T   L+ A ++  +IE++  L   ++
Sbjct: 258 GLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIY 306



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 88/187 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+   VF+EMKR G  P   +   L+++YS+ G+  +   V  +M ++G+ PD    N++
Sbjct: 191 SEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAV 250

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L    R G +++ E+VL  M+ G    +  TY  L++ Y  G  IE+M  L + + +  +
Sbjct: 251 LAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGII 310

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P  V   + +   S+  L       F E+   G  PD  T   ++S       + +   
Sbjct: 311 EPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANE 370

Query: 236 LVRTMHK 242
           ++  M +
Sbjct: 371 ILDCMKR 377



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 35/236 (14%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A AV++ M   G+ P + S+  +L A ++ G   + E V+ +M     KP+     S
Sbjct: 225 FDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCS 284

Query: 115 MLNLYGRLGQFEKM-----------------------------------EEVLTAMEKGS 139
           +L+ Y    + E+M                                   E     + +  
Sbjct: 285 LLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRG 344

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           ++ DI+T N +++IYGR   + K   +   +      P + T+ S +  YSR   + R  
Sbjct: 345 FSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSE 404

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
           EI  E++  G  PD  +   +I A     ++   + ++  M +       I +N +
Sbjct: 405 EILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTF 460



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 53/109 (48%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           ++++  S  F  +  +  E+   GI P + S+  ++ AY + G +     V+++M +SG 
Sbjct: 391 MYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGP 450

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            PD    N+ +  Y     F +  +V+  M K     + STYN +++ Y
Sbjct: 451 APDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWY 499


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 7/221 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  VFE MK  G  P + ++  ++  +   G V K   +++QM + G++PD    N +
Sbjct: 317 SGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLL 376

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +      G  E    +L  ME    AAD  TYN+LI+   + G +++   LF  L  + +
Sbjct: 377 IRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGI 436

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSSEDQIEQVT 234
           +P+ VT+ + +    +   +       E+M+ AGC PD  T    I + C ++   E ++
Sbjct: 437 RPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLS 496

Query: 235 TLVRTMHKDMKTALPIYF----NLYGEK--GVARSNLGQYI 269
            +   + KD+K +   Y      L+ E+  G+A    GQ +
Sbjct: 497 FIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMV 537



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 75/176 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + ++MK LG  P  +++  L+  + +     + E ++N+M  +GL P      +++N Y 
Sbjct: 252 MLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYC 311

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+      V  +M+      ++ TYN ++  +   G + K   L   +    ++PDVV
Sbjct: 312 REGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVV 371

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           T+   +              +   M   G   D  T  VLI A     ++++  +L
Sbjct: 372 TYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSL 427



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 2/190 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +   M+  G+     ++ +L+ A  KTG V +   + + +   G++P++   N
Sbjct: 385 HIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFN 444

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-NIYGRGGFIEKMEGLFQSLPA 172
           +++N   + G+F+     L  M     A D  TY+  I N+    G  E +  + + L  
Sbjct: 445 TVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEML-Q 503

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           K +KP  V +T  +    +++ Y     I+ +M+  GC PD  T    + A  +E ++ +
Sbjct: 504 KDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHE 563

Query: 233 VTTLVRTMHK 242
              +V  M K
Sbjct: 564 AENVVMEMKK 573



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 83/186 (44%), Gaps = 4/186 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F E+++    P M +H  L+          +   ++ +M + G +P T    ++
Sbjct: 216 DEALELFRELEQ----PDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAAL 271

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++L+ R  + E+ E++L  M          T   ++N Y R G +     +F+S+  K  
Sbjct: 272 VDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGC 331

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+V T+ + +  +       + + + ++M + G  PD  T  +LI     +  IE    
Sbjct: 332 EPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFR 391

Query: 236 LVRTMH 241
           L+R M 
Sbjct: 392 LLRLME 397



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 74/170 (43%), Gaps = 4/170 (2%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            PT  ++  L+ A  +  ++   +  ++ M +SG +PD F  NS++  Y R  Q +  ++
Sbjct: 126 APTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQD 185

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +   M    ++ D  +Y  LI  +   G +++   LF+ L     +PD+ T  + +    
Sbjct: 186 LFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELE----QPDMYTHAALVKGLC 241

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             +     L + ++M + G  P       L+     E + E+   ++  M
Sbjct: 242 DARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEM 291



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/177 (16%), Positives = 79/177 (44%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           +I  +D   +FE MK+  +  + ++++ +L  +S+   + +   +++ M +  L  +  +
Sbjct: 644 TIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDI 703

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
             S++N + +L  +     +L +M    +  ++ +Y  L++ +   G  ++ + +F+ L 
Sbjct: 704 YTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLR 763

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            K    D + W   +    R+     C ++   +    C P   T  +L    S+ +
Sbjct: 764 WKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAMLTEELSTRE 820



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 80/185 (43%), Gaps = 4/185 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F++M   G +    S+  L+  + +TG V +   +  ++ +    PD +   +++ 
Sbjct: 183 AQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ----PDMYTHAALVK 238

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 + E+   +L  M++  +      Y  L++++ R    E+ E +   +    L P
Sbjct: 239 GLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVP 298

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             VT T+ + AY R+      + +FE M   GC P+  T   ++    +  ++ +   L+
Sbjct: 299 CAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALL 358

Query: 238 RTMHK 242
             M +
Sbjct: 359 DQMRE 363



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 49/130 (37%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
           H     P     N+++    R       +  L+ M +  +  D  T+N LI  Y R   +
Sbjct: 121 HHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQL 180

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           +  + LF  +P +    D V++ + +  +         LE+F E+     Y      K L
Sbjct: 181 DVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYTHAALVKGL 240

Query: 221 ISACSSEDQI 230
             A   E+ +
Sbjct: 241 CDARRGEEGL 250



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/212 (19%), Positives = 86/212 (40%), Gaps = 19/212 (8%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +  +EM +  + P+  ++ +++    K  N      +  QM   G  PD     + +  Y
Sbjct: 496 SFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAY 555

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              G+  + E V+  M+KG    D   YN LI+ +   G  +    + + +      P+ 
Sbjct: 556 CNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNH 615

Query: 180 VTW-----------TSRLAAYSRKKLYR--RCLEIFE--EMIDAGCYPDGGTAKV-LISA 223
            T+            +         +++     ++FE  E++     P    A + ++  
Sbjct: 616 FTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEG 675

Query: 224 CSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
            S E ++++VT+LV  M +D    LP+  ++Y
Sbjct: 676 FSEERRLDEVTSLVSHMKED---DLPLNEDIY 704


>gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Cucumis sativus]
          Length = 608

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 97/186 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V+E++   G  P   ++   + AY + G  +K E +  +M + G        +S
Sbjct: 381 YEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSS 440

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++YG+ G+ +    +L  M++     ++  YNIL+ ++G+   ++++E L++ +  K+
Sbjct: 441 LISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKK 500

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD V++TS ++AY +   + +C + + E    G   D     +++   S   +++++ 
Sbjct: 501 IAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELV 560

Query: 235 TLVRTM 240
            L+R M
Sbjct: 561 KLLRDM 566



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 63/148 (42%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M++ GI      +  L+  ++    V   E + N+     L  D  +   ++ +Y +
Sbjct: 283 FRDMRKKGIAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQ 342

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  EK  E++  M+          +  ++N Y      E    +++ L     +P  VT
Sbjct: 343 QGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVT 402

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           + S + AY R  LY +  +IF EM + G
Sbjct: 403 YASAINAYCRVGLYSKAEDIFGEMEEKG 430



 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/132 (18%), Positives = 60/132 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +MK  G  P +  + +L+  + K  N+ + E +  +M +  + PD     S++
Sbjct: 453 DAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSII 512

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +  +FEK E+            D +   I++ ++ +   ++++  L + +  +  +
Sbjct: 513 SAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTR 572

Query: 177 PDVVTWTSRLAA 188
            D   + + L A
Sbjct: 573 LDERLYRTALNA 584


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 1/186 (0%)

Query: 58  AHAVFEEMKRLGITPTMKS-HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  VF EM  +G  P  ++ H  ++    K   V +   V  QM K G  PD    N+M+
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  ++  +VL  M   +      TY IL+N   + G +E+ E LF+ + A   +
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFR 327

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ V +TS +  +++    +    +F+EM++AG  PD  T  V+I         EQ    
Sbjct: 328 PNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKS 387

Query: 237 VRTMHK 242
              M +
Sbjct: 388 FEEMMR 393



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 3/206 (1%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ HT  +     S  F  A   FEEM R G  P + ++  ++   SK G VA    ++ 
Sbjct: 365 VITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMK 424

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M   G  PD+     +L+ + +LG+ ++  ++L  ++K S + ++  Y+ L+     GG
Sbjct: 425 GMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGG 484

Query: 159 FIEK-MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
            +E  ++ LF+   A     D     S +    +         IF+ M+  GC PD  T 
Sbjct: 485 SVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTY 544

Query: 218 KVLISA-C-SSEDQIEQVTTLVRTMH 241
            +LI+  C S E+++E+   L+  + 
Sbjct: 545 NILINGLCRSRENRVERAFALLHDLE 570



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 89/189 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  V + M      PT  ++ +L+ +  K G + + E +   M  SG +P++ +  
Sbjct: 275 HAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYT 334

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++ + + G+ ++   +   M +  Y  D+ T+ ++I+   + G  E+    F+ +   
Sbjct: 335 SLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRG 394

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KP+VVT+T+ +   S+         I + MI  GC+PD  T   L+       ++++ 
Sbjct: 395 GCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEA 454

Query: 234 TTLVRTMHK 242
             L+  + K
Sbjct: 455 AQLLDELDK 463



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 3/199 (1%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           HT  +   + +    +A  VF +M++ G  P   ++  ++   +K G+  +   V++ M 
Sbjct: 228 HTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNML 287

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
                P       ++N   + G  E+ EE+   M    +  +   Y  LI+ + + G ++
Sbjct: 288 AKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMK 347

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   LF  +     +PDV+T T  +    +   + +  + FEEM+  GC P+  T   +I
Sbjct: 348 EACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTII 407

Query: 222 SACSSEDQIEQVTTLVRTM 240
              S   +I +V    R M
Sbjct: 408 QGLS---KIGRVANAFRIM 423



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/188 (19%), Positives = 74/188 (39%), Gaps = 36/188 (19%)

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
           N ++C  +  +M K+G+ P+TF  N ++  + R  + +        M++     D+ T+ 
Sbjct: 134 NYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFL 193

Query: 149 ILINIYGRGGFIEKMEGLFQS---------------------LPAKRLK----------- 176
           IL++   + G  EK   +F                       L AKR+K           
Sbjct: 194 ILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEK 253

Query: 177 ----PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
               PD + + + +   ++    +  L++ + M+   C P   T  +L+++      +E+
Sbjct: 254 CGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLER 313

Query: 233 VTTLVRTM 240
              L R M
Sbjct: 314 AEELFRVM 321



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/156 (19%), Positives = 66/156 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  M   G  P    +  L+  ++K+G + +   + ++M ++G +PD      M++
Sbjct: 314 AEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMID 373

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G FE+  +    M +G    ++ TY  +I    + G +     + + + A    P
Sbjct: 374 GLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFP 433

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D VT+   L  + +        ++ +E+      P+
Sbjct: 434 DSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPN 469



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/181 (18%), Positives = 70/181 (38%), Gaps = 2/181 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAY--SKTGNVAKCEGVINQMHKSGLKPDTFVI 112
             +A  +F+ M   G  P   ++ +L+     S+   V +   +++ +   G  PD    
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTY 581

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
             +     ++G+ ++  ++L       + AD+  Y  L       G +++   LFQ +  
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +   PD   +   +    + K      + F+EMI  G  P   T   L+ A      +++
Sbjct: 642 QGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDE 701

Query: 233 V 233
            
Sbjct: 702 A 702



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 50/112 (44%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            ++G + D F  N ++NL      + +   +   M K   A +  ++NILI  + R    
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +     F+ +  KR KPD+ T+   +    +  +  +  E+F EM+  G  P
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVP 222



 Score = 43.9 bits (102), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 72/185 (38%), Gaps = 7/185 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F+EM R G  P   ++  ++    K   +       ++M   G KP      +++ 
Sbjct: 632 AVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQ 691

Query: 118 LYGRLGQ----FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
                G     F + E +L    +G     +  Y+ LI+ + +   ++    LF+ + ++
Sbjct: 692 ALCHAGNVDEAFHRFEGMLA---RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P  VT  S      R     +  E+ +EM   G  P   T   ++      D+  ++
Sbjct: 749 GNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKL 808

Query: 234 TTLVR 238
             LV+
Sbjct: 809 LKLVQ 813



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 58/152 (38%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+  +++ +G  P   ++  L     K G V +   ++ +    G   D     ++  
Sbjct: 562 AFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCT 621

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                GQ ++   +   M +   A D + Y  +IN   +G  +E     F  +  K  KP
Sbjct: 622 GLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKP 681

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            V T+T+ + A             FE M+  G
Sbjct: 682 TVATYTALVQALCHAGNVDEAFHRFEGMLARG 713


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 95/186 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA ++  EM++ G++P   ++ LL+ AY   G       V+ +M    ++P++FV + 
Sbjct: 355 LKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSR 414

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G+++K  +VL  M+      D   YN++I+ +G+   ++     F  + ++ 
Sbjct: 415 LLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEG 474

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PD VTW + +  + +   +    E+FE M   GC P   T  ++I++   +++ + + 
Sbjct: 475 IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMK 534

Query: 235 TLVRTM 240
            L+  M
Sbjct: 535 RLLGKM 540



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D   +  +MK  GI P + +H  L+  Y K+G        + +M   GLKP + + N+
Sbjct: 530 WDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNA 589

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y + G  E+       M        +   N LIN +G      +   + Q +    
Sbjct: 590 LINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENG 649

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +KPDVVT+T+ + A  R   +++   ++EEMI +GC PD     +L SA
Sbjct: 650 VKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSA 698



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 44  PNLFVFIFSIY-FSD------AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN FVF   +  F D         V +EMK +G+ P  + + +++  + K   +      
Sbjct: 407 PNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTT 466

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M   G++PD    N++++ + + G+    EE+  AME+       +TYNI+IN YG 
Sbjct: 467 FDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGD 526

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               + M+ L   + ++ + P+VVT T+ +  Y +   +   +E  EEM   G  P    
Sbjct: 527 QERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTM 586

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD-MKT---ALPIYFNLYGE 257
              LI+A +     EQ     R M  D +K    AL    N +GE
Sbjct: 587 YNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGE 631



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE M+R G  P   ++ +++ +Y         + ++ +M   G+ P+     ++++
Sbjct: 498 AEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVD 557

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YG+ G+F    E L  M+        + YN LIN Y + G  E+    F+ + +  LKP
Sbjct: 558 VYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP 617

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            ++   S + A+   +       + + M + G  PD  T   L+ A    D+ ++V  + 
Sbjct: 618 SLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVY 677

Query: 238 RTM 240
             M
Sbjct: 678 EEM 680



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 79/154 (51%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G++    + + +++A + +G   + E +  ++ +SG+KP T   N++L  Y + G  +  
Sbjct: 299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 358

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E +++ MEK   + D  TY++LI+ Y   G  E    + + + A  ++P+   ++  LA 
Sbjct: 359 ESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAG 418

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +  +  +++  ++ +EM   G  PD     V+I 
Sbjct: 419 FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVID 452



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 80/186 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+ M   GI P   +   L+  + K G     E +   M + G  P     N M+N
Sbjct: 463 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMIN 522

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG   +++ M+ +L  M+      ++ T+  L+++YG+ G         + + +  LKP
Sbjct: 523 SYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKP 582

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
               + + + AY+++ L  + +  F  M   G  P       LI+A   + +  +   ++
Sbjct: 583 SSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVL 642

Query: 238 RTMHKD 243
           + M ++
Sbjct: 643 QYMKEN 648



 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/143 (20%), Positives = 60/143 (41%)

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           ++ +  L+ D  ++N ++  + + G   K  ++L   +    +A  +T   +I+     G
Sbjct: 259 EIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSG 318

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              + E LF+ L    +KP    + + L  Y +    +    +  EM   G  PD  T  
Sbjct: 319 RTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYS 378

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
           +LI A  +  + E    +++ M 
Sbjct: 379 LLIDAYVNAGRWESARIVLKEME 401


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 1/186 (0%)

Query: 58  AHAVFEEMKRLGITPTMKS-HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  VF EM  +G  P  ++ H  ++    K   V +   V  QM K G  PD    N+M+
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  ++  +VL  M   +      TY IL+N   + G +E+ E LF+ + A   +
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFR 327

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ V +TS +  +++    +    +F+EM++AG  PD  T  V+I         EQ    
Sbjct: 328 PNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKS 387

Query: 237 VRTMHK 242
              M +
Sbjct: 388 FEEMMR 393



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ HT  +     S  F  A   FEEM R G  P + ++  ++   SK G VA    ++ 
Sbjct: 365 VITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMK 424

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M   G  PD+     +L+ + +LG+ ++  ++L  ++K S + ++  Y+ L+N    GG
Sbjct: 425 GMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGG 484

Query: 159 FIEK-MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
            +EK ++ LF+   A     D     S +    +         IF+ M+  GC PD  T 
Sbjct: 485 SVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTY 544

Query: 218 KVLISA-C-SSEDQIEQVTTLVRTMHK-----DMKTALPIYFNL 254
            +LI+  C S E+++E+   L+  + K     D  T  P+   L
Sbjct: 545 NILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGL 588



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 89/189 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  V + M      PT  ++ +L+ +  K G + + E +   M  SG +P++ +  
Sbjct: 275 HAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYT 334

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++ + + G+ ++   +   M +  Y  D+ T+ ++I+   + G  E+    F+ +   
Sbjct: 335 SLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRG 394

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KP+VVT+T+ +   S+         I + MI  GC+PD  T   L+       ++++ 
Sbjct: 395 GCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEA 454

Query: 234 TTLVRTMHK 242
             L+  + K
Sbjct: 455 AQLLDELDK 463



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 3/199 (1%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           HT  +   + +    +A  VF +M++ G  P   ++  ++   +K G+  +   V++ M 
Sbjct: 228 HTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNML 287

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
                P       ++N   + G  E+ EE+   M    +  +   Y  LI+ + + G ++
Sbjct: 288 AKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMK 347

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   LF  +     +PDV+T T  +    +   + +  + FEEM+  GC P+  T   +I
Sbjct: 348 EACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTII 407

Query: 222 SACSSEDQIEQVTTLVRTM 240
              S   +I +V    R M
Sbjct: 408 QGLS---KIGRVANAFRIM 423



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/188 (19%), Positives = 74/188 (39%), Gaps = 36/188 (19%)

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
           N ++C  +  +M K+G+ P+TF  N ++  + R  + +        M++     D+ T+ 
Sbjct: 134 NYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFL 193

Query: 149 ILINIYGRGGFIEKMEGLFQS---------------------LPAKRLK----------- 176
           IL++   + G  EK   +F                       L AKR+K           
Sbjct: 194 ILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEK 253

Query: 177 ----PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
               PD + + + +   ++    +  L++ + M+   C P   T  +L+++      +E+
Sbjct: 254 CGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLER 313

Query: 233 VTTLVRTM 240
              L R M
Sbjct: 314 AEELFRVM 321



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/156 (19%), Positives = 66/156 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  M   G  P    +  L+  ++K+G + +   + ++M ++G +PD      M++
Sbjct: 314 AEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMID 373

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G FE+  +    M +G    ++ TY  +I    + G +     + + + A    P
Sbjct: 374 GLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFP 433

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D VT+   L  + +        ++ +E+      P+
Sbjct: 434 DSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPN 469



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/180 (18%), Positives = 71/180 (39%), Gaps = 2/180 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAY--SKTGNVAKCEGVINQMHKSGLKPDTFVI 112
             +A  +F+ M   G  P   ++ +L+     S+   V +   +++ + K G  PD    
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTY 581

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
             +     ++G+ ++  ++L       + AD+  Y  L       G +++   LFQ +  
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +   PD   +   +    + K      + F+EMI  G  P   T   L+ A      +++
Sbjct: 642 QGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDE 701



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 50/112 (44%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            ++G + D F  N ++NL      + +   +   M K   A +  ++NILI  + R    
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +     F+ +  KR KPD+ T+   +    +  +  +  E+F EM+  G  P
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVP 222



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 72/185 (38%), Gaps = 7/185 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F+EM R G  P   ++  ++    K   +       ++M   G KP      +++ 
Sbjct: 632 AVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQ 691

Query: 118 LYGRLGQ----FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
                G     F + E +L    +G     +  Y+ LI+ + +   ++    LF+ + ++
Sbjct: 692 ALCHAGNVDEAFHRFESMLA---RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P  VT  S      R     +  E+ +EM   G  P   T   ++      D+  ++
Sbjct: 749 GNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKL 808

Query: 234 TTLVR 238
             LV+
Sbjct: 809 LKLVQ 813



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 1/181 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EE    G    + ++  L T     G V +   +  +M + G  PD      ++N   
Sbjct: 600 MLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI 659

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDV 179
           ++ + E   +    M        ++TY  L+      G +++    F+S+ A+  L   V
Sbjct: 660 KVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSV 719

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           + + + +  + +       L++FE+MI  G  P   T+  L        + E+   L++ 
Sbjct: 720 MIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQE 779

Query: 240 M 240
           M
Sbjct: 780 M 780


>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 553

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 101/211 (47%), Gaps = 6/211 (2%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ HT  +  +     +++A A+F  M+  G  P+  ++ ++L  + +     + E V  
Sbjct: 175 VVSHTALMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFE 234

Query: 99  QM---HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            +    KS LKPD  + + M+ ++ + G +EK  ++   M +        TYN L++   
Sbjct: 235 TLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLMSFET 294

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
               + K   ++  +    L+PDV+++   + AY + +     L +FEEM+DAG  P   
Sbjct: 295 NYKEVSK---IYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHK 351

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
              +L+ A +    +EQ  T+ ++M +D  T
Sbjct: 352 AYNILLDAFAISGMVEQARTVFKSMRRDRYT 382



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 86/182 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A AVFEEM   G+ PT K++ +LL A++ +G V +   V   M +    PD     +M
Sbjct: 332 DEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTM 391

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ Y         E     +++     ++ TY  LI  Y +   ++KM   ++ +  + +
Sbjct: 392 LSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGV 451

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           K +   +T+ + AY + K +   +  ++EM   G  PD     +L+S   + D+ ++   
Sbjct: 452 KANQTIFTTIMDAYGKNKDFGSAVIWYKEMEQYGVPPDQKAKNILLSLAKTADEQKEANQ 511

Query: 236 LV 237
           +V
Sbjct: 512 MV 513



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%)

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           F   + +   ++++M+R G+ P + S+ LL+ AY K     +   V  +M  +G++P   
Sbjct: 292 FETNYKEVSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHK 351

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N +L+ +   G  E+   V  +M +  Y  D+ +Y  +++ Y     +   E  F  L
Sbjct: 352 AYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRL 411

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
               L+P+VVT+ + +  Y++     + +E +EEM
Sbjct: 412 KQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEM 446



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 3/179 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +F  M + G+  +  ++  L++  +    V+K   + +QM +SGL+PD      
Sbjct: 264 YEKARQIFALMTQRGVPKSTVTYNSLMSFETNYKEVSK---IYDQMQRSGLQPDVISYAL 320

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+  + ++   V   M           YNIL++ +   G +E+   +F+S+   R
Sbjct: 321 LINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDR 380

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             PD+ ++T+ L+AY            F  +   G  P+  T   LI   +  + ++++
Sbjct: 381 YTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKM 439



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           ++L+TAY K GN +  E V++ M+K G  P+     +++  YGR  ++   E +   M+ 
Sbjct: 144 LMLITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQS 203

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR---LKPDVVTWTSRLAAYSRKKL 194
                   TY I++  +  G   ++ E +F++L  +    LKPD   +   +  + +   
Sbjct: 204 SGPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGN 263

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           Y +  +IF  M   G      T   L+S  ++  ++ ++
Sbjct: 264 YEKARQIFALMTQRGVPKSTVTYNSLMSFETNYKEVSKI 302



 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 53/115 (46%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  L  ++ +   + A   F  +K+ G+ P + ++  L+  Y+KT N+ K      
Sbjct: 385 LCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYE 444

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M   G+K +  +  ++++ YG+   F         ME+     D    NIL+++
Sbjct: 445 EMQLRGVKANQTIFTTIMDAYGKNKDFGSAVIWYKEMEQYGVPPDQKAKNILLSL 499



 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 44/100 (44%)

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           +LI  YG+ G     E +   +      P+VV+ T+ + AY R   Y     IF  M  +
Sbjct: 145 MLITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSS 204

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248
           G  P   T ++++      ++ ++   +  T+  + K+ L
Sbjct: 205 GPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPL 244


>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
 gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
          Length = 822

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 90/198 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  AVFE M   G+ P + S+  L+ AY+  G       V   + ++G+ PD     S+L
Sbjct: 338 NCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLL 397

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YGR  Q  K +EV   M K     ++ TYN LI+ YG  GF+ +   +F+ +     K
Sbjct: 398 NSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTK 457

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VV+  + LAA SR K       +       G   +       I +  +  ++E+   L
Sbjct: 458 PNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIAL 517

Query: 237 VRTMHKDMKTALPIYFNL 254
            +TM K    A  + F +
Sbjct: 518 YQTMRKKKVKADSVTFTI 535



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 4/199 (2%)

Query: 43  TPNLFVFIFSIYFSDAHA--VFEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           T N+ ++  S     + A  VF  M  KR    P + +   ++  YS  G +  C  V  
Sbjct: 285 TFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFE 344

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M   GLKP+    N+++  Y   G  E    V   +++     D+ +Y  L+N YGR  
Sbjct: 345 AMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSR 404

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              K + +F  +  +R KP+VVT+ + + AY         +EIF +M   G  P+  +  
Sbjct: 405 QPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVSVC 464

Query: 219 VLISACSSEDQIEQVTTLV 237
            L++ACS   +   V T++
Sbjct: 465 TLLAACSRSKKKVNVETVL 483



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  +     +S A + FE MK   + P   +  +++   SK G  ++   V N
Sbjct: 248 LVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFN 307

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   ++  +PD     S+++LY   G+ E    V  AM       +I +YN L+  Y  
Sbjct: 308 SMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAV 367

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  E    +F  +    + PDVV++TS L +Y R +   +  E+F  M      P+  T
Sbjct: 368 HGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVT 427

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   + +   + R M +D
Sbjct: 428 YNALIDAYGSNGFLAEAVEIFRQMEQD 454



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 100/211 (47%), Gaps = 6/211 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V ++M   G+ P + +H ++L+AY      +K       M  + ++PDT   N 
Sbjct: 229 WRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNI 288

Query: 115 MLNLYGRLGQFEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++    +LGQ  +  +V  +M  ++     D+ T+  ++++Y   G IE    +F+++ A
Sbjct: 289 IIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLA 348

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + LKP++V++ + + AY+   +    L +F ++   G  PD  +   L+++     Q  +
Sbjct: 349 EGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGK 408

Query: 233 VTTLVRTMHKDMKTALPIYFN----LYGEKG 259
              +   M K+ +    + +N     YG  G
Sbjct: 409 AKEVFLMMRKERRKPNVVTYNALIDAYGSNG 439



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   V +  G+  +M K   KPD    ++++N +GR GQ+     ++  M + 
Sbjct: 148 MMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRA 207

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           + A   STYN LIN  G  G   +   + + +    + PD+VT    L+AY   + Y + 
Sbjct: 208 AIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKA 267

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           L  FE M  A   PD  T  ++I   S   Q  Q   +  +M        P
Sbjct: 268 LSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRP 318



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 95/238 (39%), Gaps = 36/238 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++A  +F +M++ G  P + S   LL A S++      E V++     G+  +T   N
Sbjct: 440 FLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYN 499

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN--------------------- 152
           S +  Y    + EK   +   M K    AD  T+ ILI+                     
Sbjct: 500 SAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDL 559

Query: 153 --------------IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                          Y + G + + E +F  +     KPDV+ +TS L AY+  + + + 
Sbjct: 560 SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWGKA 619

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNLY 255
            E+F EM   G  PD      L+ A +   Q   V  L+  M  K++     ++F ++
Sbjct: 620 CELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEVPFTGAVFFEIF 677



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 2/189 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +F EM++    P  +++  L+ A+ + G       +++ M ++ + P     N
Sbjct: 158 WVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN 217

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N  G  G + +  EV   M       D+ T+NI+++ Y  G    K    F+ +   
Sbjct: 218 NLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGA 277

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIE 231
           +++PD  T+   +   S+     + L++F  M D  A C PD  T   ++   S   +IE
Sbjct: 278 KVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIE 337

Query: 232 QVTTLVRTM 240
               +   M
Sbjct: 338 NCRAVFEAM 346



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 82/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M++    P + ++  L+ AY   G +A+   +  QM + G KP+   + ++L 
Sbjct: 409 AKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLA 468

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R  +   +E VL+A +      + + YN  I  Y     +EK   L+Q++  K++K 
Sbjct: 469 ACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRKKKVKA 528

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+T  ++   R   Y   +   +EM D            ++ A S + Q+ +  ++ 
Sbjct: 529 DSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIF 588

Query: 238 RTM 240
             M
Sbjct: 589 NQM 591



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%)

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +Y A    YN++I ++ R  ++++  GLF  +     KPD  T+ + + A+ R   +R  
Sbjct: 138 NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWA 197

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + + ++M+ A   P   T   LI+AC S     Q   + + M
Sbjct: 198 MNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKM 239



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 1/167 (0%)

Query: 75  KSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
           K+  +L+   S+ G +  C  V   M  +        + N M+ L+ R    ++   +  
Sbjct: 108 KNFPVLIRELSRRGCIELCVNVFKWMKSQKNYCARNDIYNMMIRLHARHNWVDQARGLFF 167

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            M+K S   D  TY+ LIN +GR G       L   +    + P   T+ + + A     
Sbjct: 168 EMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSG 227

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +R+ LE+ ++M D G  PD  T  +++SA  S  Q  +  +    M
Sbjct: 228 NWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELM 274


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 99/189 (52%), Gaps = 3/189 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EM   G++P + ++  L+    K GN+++   + +QM   GL+P+     ++++ + 
Sbjct: 334 LLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFC 393

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G   +  +VL+ M    ++  + TYN L++ Y   G +++  G+ + +  + L PDVV
Sbjct: 394 QKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVV 453

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++++ +A + R++   +  ++ EEM++ G  PD  T   LI     + ++ +   L R M
Sbjct: 454 SYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREM 513

Query: 241 HKDMKTALP 249
              M+  LP
Sbjct: 514 ---MRRGLP 519



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 89/169 (52%), Gaps = 2/169 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  VF +M R G++P + ++ +++      G++ K  G + +M K G+ P+    N+
Sbjct: 188 YDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNT 247

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAK 173
           +++   +  + ++   +L AM  G  AA++ +YN +IN + G+G   E  E L + +  K
Sbjct: 248 LIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGE-LVEEMRGK 306

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            L PD VT+ + +  + ++    + L +  EM+  G  P+  T   LI+
Sbjct: 307 GLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLIN 355



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 89/182 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  +F++M+  G+ P  +++  L+  + + G + +   V+++M  SG  P     N+
Sbjct: 363 LSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNA 422

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  LG+ ++   +L  M +     D+ +Y+ +I  + R   + K   + + +  K 
Sbjct: 423 LVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKG 482

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD VT++S +     ++      ++F EM+  G  PD  T   LI+A   + ++ +  
Sbjct: 483 VLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKAL 542

Query: 235 TL 236
            L
Sbjct: 543 RL 544



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 85/184 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+   M   G+   + S+  ++      G +++   ++ +M   GL PD    N+++
Sbjct: 260 EAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLV 319

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + + G   +   +L+ M     + ++ TY  LIN   + G + +   +F  +  + L+
Sbjct: 320 NGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLR 379

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+T+ +  + +K L     ++  EMI +G  P   T   L+       ++++   +
Sbjct: 380 PNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGI 439

Query: 237 VRTM 240
           +R M
Sbjct: 440 LRGM 443



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 5/179 (2%)

Query: 67  RLGITPTMKSHMLLLTAY-----SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           R G  PT+ S+  +L A      S   +    E V   M ++G+ P+ +  N ++     
Sbjct: 160 RHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVS 219

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  EK    +  MEK   + ++ TYN LI+   +   +++   L +++    +  ++++
Sbjct: 220 QGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLIS 279

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + S +     K       E+ EEM   G  PD  T   L++    E  + Q   L+  M
Sbjct: 280 YNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/237 (18%), Positives = 88/237 (37%), Gaps = 50/237 (21%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM R G+ P   ++  L+ AY   G ++K   + ++M + G  PD    + ++
Sbjct: 505 EAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLI 564

Query: 117 N---------LYGRL-----------------------------------------GQFE 126
           N         +  RL                                         G   
Sbjct: 565 NGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMN 624

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
           + + V   M + ++  + + YN++I+ + RGG + K   L+  L         V   + +
Sbjct: 625 EADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALV 684

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            A +R+ +      + + ++ +    D   AKVL+     E  ++ V  ++  M KD
Sbjct: 685 KALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKD 741



 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 52/122 (42%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EEM   G+ P   ++  L+        + +   +  +M + GL PD     S++N Y   
Sbjct: 476 EEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVD 535

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G+  K   +   M +  +  D  TY++LIN   +    +  + L   L  +   PD VT+
Sbjct: 536 GELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTY 595

Query: 183 TS 184
            +
Sbjct: 596 NT 597


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 83/158 (52%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AV++ +   G TP   ++  L++AY KT  + K   V  +M +  ++      +S++
Sbjct: 191 EALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLI 250

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + GQ+E    +   M++ +   +  TYN L+    +GG  EK   +F+ + A    
Sbjct: 251 SACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCT 310

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           PDVVT+T+ ++AY R   +++ L+ F +M   GC PD 
Sbjct: 311 PDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDA 348



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 35/234 (14%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           +T  + + I+S     A  +  EM++  I   + +   L+    K G +     + N M 
Sbjct: 71  YTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMR 130

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK------------------------ 137
            +   P+    N+++++YG+LG++E+   VL  M++                        
Sbjct: 131 AANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPR 190

Query: 138 -----------GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
                        Y  + +TYN LI+ YG+   + K   ++Q +  + ++  V+T++S +
Sbjct: 191 EALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLI 250

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +A  +   +   L IF EM    C P+  T   L++AC+   Q E+ T +   M
Sbjct: 251 SACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQM 304



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 7/187 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  +  +  +Y     +  A  V + MK+ G+ P ++++  L+ A +      +   V
Sbjct: 136 PNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAV 195

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             ++   G  P++   N++++ YG+  Q  K  EV   M + +    + TY+ LI+   +
Sbjct: 196 YQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEK 255

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  E    +F  +      P+ VT+ S + A ++   + +  E+FE+M   GC PD  T
Sbjct: 256 AGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVT 315

Query: 217 AKVLISA 223
              LISA
Sbjct: 316 YTALISA 322



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 7/150 (4%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           +TPN   +  + S Y        A  V++EM R  +  ++ ++  L++A  K G      
Sbjct: 204 YTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETAL 263

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            + N+M +    P+T   NS++    + GQ+EK  EV   M       D+ TY  LI+ Y
Sbjct: 264 RIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAY 323

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            RGG  +K    F  +  +  KPD + + +
Sbjct: 324 ERGGQWQKALQAFGKMCMQGCKPDAIVYNA 353



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 86/175 (49%), Gaps = 3/175 (1%)

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
           L  YS+  +V +   ++N+M +  ++ +     +++N+  + G+     E+   M   + 
Sbjct: 77  LCIYSQ--DVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANC 134

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             ++ TYN L+++YG+ G  E+   +   +  + ++P + T+ + + A +     R  L 
Sbjct: 135 MPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALA 194

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNL 254
           +++ ++  G  P+  T   LISA     Q+ +   + + M  ++M+ ++  Y +L
Sbjct: 195 VYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSL 249



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 46/106 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +F EM++    P   ++  L+TA ++ G   K   V  QM   G  PD     +
Sbjct: 259 WETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTA 318

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
           +++ Y R GQ++K  +    M       D   YN +I+     G I
Sbjct: 319 LISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAIIDTLWETGII 364



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  VFE+M   G TP + ++  L++AY + G   K      +M   G KPD  V N+
Sbjct: 294 WEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNA 353

Query: 115 MLNLYGRLG----QFEKMEEVLTAMEKGSY 140
           +++     G    Q   ++  LTA+++G +
Sbjct: 354 IIDTLWETGIIWAQGRALQLFLTAVQQGHF 383


>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
           [Vitis vinifera]
 gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 35/224 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F+ A  VF +M + G +P++ SH  L+ AY K     K E V  +M  SG +P       
Sbjct: 156 FNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQL 215

Query: 115 MLNLYGRLGQFEKMEEVLTAM---EKGSYAADISTYNILINIYGRGGFIEKMEGLF---- 167
           +L ++    +F++ EE    +   EK     D   ++++I +Y + G  EK   +F    
Sbjct: 216 ILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMR 275

Query: 168 -QSLPAKR---------------------------LKPDVVTWTSRLAAYSRKKLYRRCL 199
            + +P                              L+PDVV++   + AY + +     L
Sbjct: 276 ERGVPQSTVTYNSLMSFETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEAL 335

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +FEEM+DAG  P      +L+ A +    ++Q  T+ ++M +D
Sbjct: 336 AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRD 379



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AVFEEM   G+ PT K++ +LL A++ +G V +   V   M +    PD     +ML
Sbjct: 333 EALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTML 392

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y      E  E+    +++  +  ++ TY  LI  Y +   +EKM   ++ +    +K
Sbjct: 393 SAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIK 452

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +   +T+ + AY + K +   +  F+EM   G  PD     +L+S   +E + E+   L
Sbjct: 453 ANQAIYTAMMDAYGKNKDFGSAVFWFKEMGFCGVPPDRKATNILLSLAKTEAEKEEANLL 512

Query: 237 V 237
           V
Sbjct: 513 V 513



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 75/155 (48%)

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           F   + +    +++M+R G+ P + S+ LL+ AY K     +   V  +M  +G++P   
Sbjct: 292 FETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK 351

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N +L+ +   G  ++   V  +M +     DI +Y  +++ Y     +E  E  F+ L
Sbjct: 352 AYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRL 411

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
                +P+VVT+ + +  Y++     + +E +EEM
Sbjct: 412 KQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEM 446



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +F  M+  G+  +  ++  L++  +    V+K     +QM ++GL+PD      
Sbjct: 264 YEKARKIFGLMRERGVPQSTVTYNSLMSFETNYKEVSKT---YDQMQRAGLRPDVVSYAL 320

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+  + E+   V   M           YNIL++ +   G +++   +F+S+   R
Sbjct: 321 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDR 380

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             PD+ ++T+ L+AY          + F  +   G  P+  T   LI   +    +E++
Sbjct: 381 CTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKM 439



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 88/201 (43%), Gaps = 6/201 (2%)

Query: 46  LFVFIFSIYFSDAHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           L +F+    F +A   FE +   ++  + P  K   +++  Y K GN  K   +   M +
Sbjct: 217 LKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRE 276

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G+   T   NS+++       ++++ +    M++     D+ +Y +LIN YG+    E+
Sbjct: 277 RGVPQSTVTYNSLMSFET---NYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEE 333

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              +F+ +    ++P    +   L A++   +  +   +F+ M    C PD  +   ++S
Sbjct: 334 ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLS 393

Query: 223 ACSSEDQIEQVTTLVRTMHKD 243
           A  +   +E      R + +D
Sbjct: 394 AYVNASDMEGAEKFFRRLKQD 414



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           ++L+TAY K G+  K E V   MHK G  P      +++  YG+  Q+ K E V   M  
Sbjct: 144 LMLVTAYGKQGDFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLS 203

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSL---PAKRLKPDVVTWTSRLAAYSRKKL 194
                   TY +++ I+  G   ++ E  F++L       LKPD   +   +  Y +   
Sbjct: 204 SGPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGN 263

Query: 195 YRRCLEIFEEMIDAGC 210
           Y +  +IF  M + G 
Sbjct: 264 YEKARKIFGLMRERGV 279



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN--ILINIYGRGGFIEKME 164
           P   V+ +++  + +L ++  + E+L  ++   +  D S  +  +L+  YG+ G   K E
Sbjct: 103 PRDLVLGTLVR-FKQLKKWSLVSEILEWLQTQPWW-DFSEMDFLMLVTAYGKQGDFNKAE 160

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            +F  +  K   P V++ T+ + AY + K Y +   +F  M+ +G  P   T ++++   
Sbjct: 161 RVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQLILKIF 220

Query: 225 SSEDQIEQVTTLVRTMHKDMKTAL 248
              ++ ++      T+  D K+ L
Sbjct: 221 VEGNKFKEAEETFETLLDDEKSPL 244



 Score = 37.0 bits (84), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 39/84 (46%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           +T  L  ++ +     A   F  +K+ G  P + ++  L+  Y+K  N+ K      +M 
Sbjct: 388 YTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQ 447

Query: 102 KSGLKPDTFVINSMLNLYGRLGQF 125
             G+K +  +  +M++ YG+   F
Sbjct: 448 VHGIKANQAIYTAMMDAYGKNKDF 471


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 95/186 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA ++  EM++ G++P   ++ LL+ AY   G       V+ +M    ++P++FV + 
Sbjct: 326 LKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSR 385

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +   G+++K  +VL  M+      D   YN++I+ +G+   ++     F  + ++ 
Sbjct: 386 LLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEG 445

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PD VTW + +  + +   +    E+FE M   GC P   T  ++I++   +++ + + 
Sbjct: 446 IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMK 505

Query: 235 TLVRTM 240
            L+  M
Sbjct: 506 RLLGKM 511



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D   +  +MK  GI P + +H  L+  Y K+G        + +M   GLKP + + N+
Sbjct: 501 WDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNA 560

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y + G  E+       M        +   N LIN +G      +   + Q +    
Sbjct: 561 LINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENG 620

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +KPDVVT+T+ + A  R   +++   ++EEMI +GC PD     +L SA
Sbjct: 621 VKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSA 669



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 44  PNLFVFIFSIY-FSD------AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN FVF   +  F D         V +EMK +G+ P  + + +++  + K   +      
Sbjct: 378 PNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTT 437

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M   G++PD    N++++ + + G+    EE+  AME+       +TYNI+IN YG 
Sbjct: 438 FDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGD 497

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               + M+ L   + ++ + P+VVT T+ +  Y +   +   +E  EEM   G  P    
Sbjct: 498 QERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTM 557

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD-MKT---ALPIYFNLYGE 257
              LI+A +     EQ     R M  D +K    AL    N +GE
Sbjct: 558 YNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGE 602



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE M+R G  P   ++ +++ +Y         + ++ +M   G+ P+     ++++
Sbjct: 469 AEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVD 528

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YG+ G+F    E L  M+        + YN LIN Y + G  E+    F+ + +  LKP
Sbjct: 529 VYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP 588

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            ++   S + A+   +       + + M + G  PD  T   L+ A    D+ ++V  + 
Sbjct: 589 SLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVY 648

Query: 238 RTM 240
             M
Sbjct: 649 EEM 651



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 79/153 (51%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G++    + + +++A + +G   + E +  ++ +SG+KP T   N++L  Y + G  +  
Sbjct: 270 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 329

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E +++ MEK   + D  TY++LI+ Y   G  E    + + + A  ++P+   ++  LA 
Sbjct: 330 ESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAG 389

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +  +  +++  ++ +EM   G  PD     V+I
Sbjct: 390 FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVI 422



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 80/186 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+ M   GI P   +   L+  + K G     E +   M + G  P     N M+N
Sbjct: 434 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMIN 493

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG   +++ M+ +L  M+      ++ T+  L+++YG+ G         + + +  LKP
Sbjct: 494 SYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKP 553

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
               + + + AY+++ L  + +  F  M   G  P       LI+A   + +  +   ++
Sbjct: 554 SSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVL 613

Query: 238 RTMHKD 243
           + M ++
Sbjct: 614 QYMKEN 619



 Score = 41.6 bits (96), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/143 (20%), Positives = 60/143 (41%)

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           ++ +  L+ D  ++N ++  + + G   K  ++L   +    +A  +T   +I+     G
Sbjct: 230 EIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSG 289

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              + E LF+ L    +KP    + + L  Y +    +    +  EM   G  PD  T  
Sbjct: 290 RTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYS 349

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
           +LI A  +  + E    +++ M 
Sbjct: 350 LLIDAYVNAGRWESARIVLKEME 372


>gi|414880641|tpg|DAA57772.1| TPA: hypothetical protein ZEAMMB73_835994 [Zea mays]
          Length = 728

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 11/215 (5%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           LF +  +     AHA++ +MKR G+ PT++++  LL    + G+  K       M     
Sbjct: 495 LFAYAANGLHEKAHAIYMDMKREGLKPTLETYTALLDTLRRAGDTEKLMETWKTMVDEKF 554

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
                + + +++   + G + ++ +V+    K      + TYNIL+N YGRGG   K+  
Sbjct: 555 GGTRVIFHMVIDCLAKHGLYLQVRDVIYEFGKMGLKPTVMTYNILMNAYGRGGQHYKLPQ 614

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L + + A  LKPD +T+ + + AY+R + + R     ++M+  G  PD  + K L++   
Sbjct: 615 LLKEMTALELKPDSITYCTMIYAYARVRDFSRAFYYHKQMVRNGQIPDPRSYKKLLN--- 671

Query: 226 SEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGV 260
                   T  V+   K++K    I   + G+ G+
Sbjct: 672 --------TLDVKAARKNIKDKSAIQGIIKGKSGL 698



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 2/200 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA   F+ M R G+  +      L+  +   G   +   + ++M K G+  +T +  +++
Sbjct: 330 DAWEFFKRMNRKGVNWSFDVGAALINIFCSDGLKKEALIIQSEMEKRGIASNTSIYETLM 389

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y +  Q E+ E +   M++ S  A  +TYNIL++ Y R    E +E L   +    ++
Sbjct: 390 KAYCKSNQIEEAEGLFVEMKEKSLQATTTTYNILMDAYSRRLQTEVVESLLLEMQDLGIR 449

Query: 177 PDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           P   ++   ++AY R KK+  +    F  M   G  P   +   L+ A ++    E+   
Sbjct: 450 PSARSYNCLISAYGRQKKMSGKAENAFLRMKRDGIKPLSSSYNALLFAYAANGLHEKAHA 509

Query: 236 LVRTMHKD-MKTALPIYFNL 254
           +   M ++ +K  L  Y  L
Sbjct: 510 IYMDMKREGLKPTLETYTAL 529



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 84/178 (47%), Gaps = 1/178 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVA-KCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EM+ LGI P+ +S+  L++AY +   ++ K E    +M + G+KP +   N++L  Y   
Sbjct: 442 EMQDLGIRPSARSYNCLISAYGRQKKMSGKAENAFLRMKRDGIKPLSSSYNALLFAYAAN 501

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  EK   +   M++      + TY  L++   R G  EK+   ++++  ++     V +
Sbjct: 502 GLHEKAHAIYMDMKREGLKPTLETYTALLDTLRRAGDTEKLMETWKTMVDEKFGGTRVIF 561

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              +   ++  LY +  ++  E    G  P   T  +L++A     Q  ++  L++ M
Sbjct: 562 HMVIDCLAKHGLYLQVRDVIYEFGKMGLKPTVMTYNILMNAYGRGGQHYKLPQLLKEM 619


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA+AV EEM+R G++P + ++ +L+  Y K GN  K   V  +M + G++       S+
Sbjct: 271 SDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSL 330

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  + R GQ ++ + +     K     D+  YN LIN +  GG +E+   +   +  KR+
Sbjct: 331 IYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRI 390

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            PD VT+ + +  +           + +EM   G  PD G  K
Sbjct: 391 PPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLGLCK 433



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 85/180 (47%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           E+M + G+  T+ ++ LL+ A    G  +    V+ +M ++GL PD F  N ++N Y + 
Sbjct: 243 EDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKE 302

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  +K  EV   M +    A   TY  LI  + R G +++ + LF+    K ++PDVV +
Sbjct: 303 GNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMY 362

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + + ++       R  EI  EM      PD  T   LI       ++++   L+  M K
Sbjct: 363 NALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTK 422



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 1/189 (0%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
             DA  VF+EM   G + P+   +  L+  Y   G +         M + G+       N
Sbjct: 199 MEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYN 258

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++     G+      VL  M++   + D+ TYNILIN Y + G  +K   +F+ +  K
Sbjct: 259 LLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRK 318

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++   VT+TS + A+SRK   +    +F+  +  G  PD      LI++  +   +E+ 
Sbjct: 319 GVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERA 378

Query: 234 TTLVRTMHK 242
             ++  M K
Sbjct: 379 FEIMAEMEK 387



 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/145 (17%), Positives = 62/145 (42%), Gaps = 8/145 (5%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + +T  ++ F       +   +F+   + GI P +  +  L+ ++   G++ +   ++ +
Sbjct: 325 VTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAE 384

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M K  + PD    N+++  +  LG+ ++   ++  M K     D+           + G 
Sbjct: 385 MEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLG--------LCKNGQ 436

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTS 184
            +  E L + +  K + PD  T+ S
Sbjct: 437 GDDAENLMKEMVGKGITPDDSTYIS 461


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 86/167 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M   G  P + S+ +L+ +Y++ G+ A+   ++ +M ++G  P+T   NS+++
Sbjct: 329 AREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIH 388

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                GQ ++   VL  ME      D+ TYN L+++ G+ G  ++   LFQ +  K ++P
Sbjct: 389 WLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEP 448

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           D +++  R+   +        L +F++M   GC  D    ++LI A 
Sbjct: 449 DTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAA 495



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EMKR G  P++ ++ +LL A    G V     + ++M   G  PD++  ++++N
Sbjct: 189 ALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVN 248

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G+ G+ E+  +V   M     A D+  YN L+    + G ++++  L + +  K   P
Sbjct: 249 GLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHP 308

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  ++ + + A  +        E+F  M+++GC PD  +  +LI + +      Q   ++
Sbjct: 309 DAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQML 368

Query: 238 RTM 240
             M
Sbjct: 369 EEM 371



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH VF EM   G+   + ++  LL   +K GN+ +   ++ +M + G  PD F  N+++
Sbjct: 258 EAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIM 317

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +  G+  + +   EV   M +     D+ +YNILI+ Y R G   +   + + +      
Sbjct: 318 DALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFI 377

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+ S +   +          + EEM  AGC PD  T   L+       + ++   L
Sbjct: 378 PETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARL 437

Query: 237 VRTM 240
            + M
Sbjct: 438 FQQM 441



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 83/180 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM R G  P   S   ++ A  K         V  +M +SG KPD    N +++ Y 
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYA 356

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G   +  ++L  M +  +  +  TYN LI+     G +++   + + +     +PDVV
Sbjct: 357 RFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVV 416

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +    ++   +R   +F++M D G  PD  +  V I   + +D++++   L + M
Sbjct: 417 TYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 5/205 (2%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           PN  V + + Y       DA  +F + +    +PT+ +   L+     +G   + E V  
Sbjct: 30  PNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYK 89

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           ++ + G + D F  N ++  +GR GQ +   E+   M+      D  TY  L+N  G+ G
Sbjct: 90  KLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAG 149

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            +++    F ++  + L P++ T+   + A+ +       L +F EM   G  P   T  
Sbjct: 150 RVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYN 209

Query: 219 VLISACSSEDQIEQVTTLVRTMHKD 243
           +L+ A  S  ++     L   M  D
Sbjct: 210 ILLDALCSAGRVGAARKLFHKMTGD 234



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 81/167 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A + F+ M   G+TP + ++ LL+ A+ K G +    G+  +M + G +P     N +L
Sbjct: 153 EARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILL 212

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +     G+     ++   M     + D  TY+ L+N  G+ G +E+   +F+ +  + + 
Sbjct: 213 DALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVA 272

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            D+V + S LA  ++     R  ++ +EM   G +PD  +   ++ A
Sbjct: 273 VDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDA 319



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 89/193 (46%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           + + S  F  A  V++++ + G      ++ +L+  + ++G +     +  +M   G +P
Sbjct: 74  ILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEP 133

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D +    ++N  G+ G+ ++      AM +     +I TYN+L++ + + G ++   GLF
Sbjct: 134 DEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLF 193

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             +  +  +P VVT+   L A           ++F +M   GC PD  T   L++     
Sbjct: 194 AEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKS 253

Query: 228 DQIEQVTTLVRTM 240
            ++E+   + R M
Sbjct: 254 GRVEEAHKVFREM 266



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 82/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EMK  G  P   ++  L+ A  K G V +     + M + GL P+    N +++
Sbjct: 119 AMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMD 178

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + ++GQ +    +   M++  +   + TYNIL++     G +     LF  +      P
Sbjct: 179 AFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSP 238

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+++ +    +        ++F EM+D G   D      L++  +    +++V  L+
Sbjct: 239 DSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLM 298

Query: 238 RTMHK 242
           + M +
Sbjct: 299 KEMSR 303



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 5/175 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSG--LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           +L   +  G +   E ++ +M   G  L+P+T V   ++  YGR  +     ++    E 
Sbjct: 1   MLVVLASWGILDPLETLLKEMVAEGRPLRPNTLV--KLITAYGRGNKSGDAFDLFNQAES 58

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
            + +  +  +  LI+I    G  E+ E +++ L  K  + D   +   +  + R      
Sbjct: 59  FACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDS 118

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIY 251
            +E+F EM   G  PD  T   L++A     ++++  +    M  + +   +P Y
Sbjct: 119 AMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTY 173


>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 498

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 25/175 (14%)

Query: 42  HTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPT------MKSHML-------------- 79
           HT ++ +  F+    F   H +  +M+RLGI P       M+S ++              
Sbjct: 225 HTYSILIKSFLQVFAFDKVHDLLSDMRRLGIRPNTITFVEMESTLIQMLGEDDCKPDSWT 284

Query: 80  ---LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
               L A+   G +   E    +   SG++P+    N +L+ YG+ G ++KM  V+  M+
Sbjct: 285 MNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQ 344

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           K  Y+  I TYN++I+ +GR G +++ME LF+ + ++R+ P  VT  S + AY R
Sbjct: 345 KYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIIPSCVTLCSLVRAYGR 399



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 4/180 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +E+ +  GI P +++  +LL +Y K+GN  K   V+  M K          N +++ +GR
Sbjct: 305 YEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGR 364

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++ME +   M+         T   L+  YGR G  +K+ G+ + +    ++ D+V 
Sbjct: 365 AGDLKQMEYLFRLMQSERIIPSCVTLCSLVRAYGRAGKADKIGGVLRFIENSDIRLDLVF 424

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   + AY R + +     + E M   G  PD  T + ++ A     +I  +TT V+ +H
Sbjct: 425 FNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAY----RISGMTTHVKELH 480



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 70/130 (53%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AV E M++   + T+ ++ +++ A+ + G++ + E +   M    + P    + S++  Y
Sbjct: 338 AVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIIPSCVTLCSLVRAY 397

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR G+ +K+  VL  +E      D+  +N L++ YGR     +M+G+ + +  K  KPD 
Sbjct: 398 GRAGKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDK 457

Query: 180 VTWTSRLAAY 189
           +T+ + + AY
Sbjct: 458 ITYRTMVKAY 467



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 6/124 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  M+   I P+  +   L+ AY + G   K  GV+  +  S ++ D    N +++ YG
Sbjct: 374 LFRLMQSERIIPSCVTLCSLVRAYGRAGKADKIGGVLRFIENSDIRLDLVFFNCLVDAYG 433

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF---IEKMEGLFQSLPAKRL-- 175
           R+ +F +M+ VL  MEK  +  D  TY  ++  Y   G    ++++ G+ +S+   ++  
Sbjct: 434 RMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVGESVGETQVVL 493

Query: 176 -KPD 178
            KPD
Sbjct: 494 KKPD 497



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/281 (19%), Positives = 107/281 (38%), Gaps = 68/281 (24%)

Query: 40  LQHTPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN--- 89
           L + PN+ +++  I           AH +F+EM   G     + +  LL+AYS++G    
Sbjct: 147 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALLSAYSRSGRFDA 206

Query: 90  ---------------------------------VAKCEGVINQMHKSGLK---------- 106
                                              K   +++ M + G++          
Sbjct: 207 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVHDLLSDMRRLGIRPNTITFVEME 266

Query: 107 -------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
                        PD++ +NS L  +G  GQ E ME      +      +I T+NIL++ 
Sbjct: 267 STLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDS 326

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+ G  +KM  + + +        +VT+   + A+ R    ++   +F  M      P 
Sbjct: 327 YGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIIPS 386

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFN 253
             T   L+ A     + +++  ++R + + D++  L ++FN
Sbjct: 387 CVTLCSLVRAYGRAGKADKIGGVLRFIENSDIRLDL-VFFN 426



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 14/184 (7%)

Query: 50  IFSIYFSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           I ++ +  A  VFE ++ +L   P +  ++ L+    K     K   +  +M   G   +
Sbjct: 128 ITALRWESALQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVN 187

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLF 167
             V  ++L+ Y R G+F+    +L  M+   +   D+ TY+ILI  + +    +K+  L 
Sbjct: 188 HEVYTALLSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVHDLL 247

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             +    ++P+ +T+    +             + + + +  C PD  T    + A    
Sbjct: 248 SDMRRLGIRPNTITFVEMEST------------LIQMLGEDDCKPDSWTMNSTLRAFGGN 295

Query: 228 DQIE 231
            QIE
Sbjct: 296 GQIE 299


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 2/217 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +  EM+  G+ PT+++   L+ AY +TG + KC  V+++M ++GLKP+     S
Sbjct: 241 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 300

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + + G+  +   +L  M       +   YN +I+ Y   G  ++   L + + +  
Sbjct: 301 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 360

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P +VT+   +     +       EI   + +    PD  +   LISAC     I++  
Sbjct: 361 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 420

Query: 235 TLVRTMHK-DMKTALPIYFNLY-GEKGVARSNLGQYI 269
            L + MHK  +K+ +  Y  L  G  G  R N  +Y+
Sbjct: 421 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 457



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 86/199 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  V + +   G+ PT   +  L+  Y +TG +        QM    +KPD    N++
Sbjct: 172 SIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL 231

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +  +    +++L  M+       + T+N LI+ YGR G +EK   +   +    L
Sbjct: 232 INGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 291

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+VV++ S + A+ +       + I ++M      P+      +I A       +Q   
Sbjct: 292 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 351

Query: 236 LVRTMHKDMKTALPIYFNL 254
           LV  M  +  +   + +NL
Sbjct: 352 LVEKMKSNGISPSIVTYNL 370



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 84/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A + F +MK   I P   ++  L+    K   +   + ++ +M  +G+ P     N++++
Sbjct: 209 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 268

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR GQ EK   VL+ M++     ++ +Y  ++N + + G I +   +   +  K + P
Sbjct: 269 AYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLP 328

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   + + + AY       +   + E+M   G  P   T  +LI    ++ QI +   ++
Sbjct: 329 NAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 388

Query: 238 RTM 240
            ++
Sbjct: 389 NSL 391



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)

Query: 49  FIFSIYFS------DAHA---VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           F +SI F       D+ A   +F +  + G+T    +  +LL    K G V+  E V+  
Sbjct: 121 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 180

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +  +GL P   + N+++N Y + G+ E        M+      D  TYN LIN   +   
Sbjct: 181 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 240

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I   + L   +    + P V T+ + + AY R     +C  +  EM + G  P+  +   
Sbjct: 241 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 300

Query: 220 LISA-CSSEDQIEQVTTLVRTMHKDMKTALPIY 251
           +++A C +    E V  L    HKD+     +Y
Sbjct: 301 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVY 333



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 81/189 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +  A+ +EM    + P   ++ +L    S+ G+      +  +  K+G+    +  + 
Sbjct: 101 MGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSI 160

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN   + G+    EEVL ++           YN LIN Y + G +E     F  + ++ 
Sbjct: 161 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 220

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPD +T+ + +    + +      ++  EM D G  P   T   LI A     Q+E+  
Sbjct: 221 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 280

Query: 235 TLVRTMHKD 243
            ++  M ++
Sbjct: 281 IVLSEMQEN 289



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 24  NYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA 83
           + LP    +  I    ++H PN   FI            E+MK  GI+P++ ++ LL+  
Sbjct: 325 DVLPNAQVYNAIIDAYVEHGPNDQAFIL----------VEKMKSNGISPSIVTYNLLIKG 374

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                 +++ E +IN +    L PD    N++++     G  +K  ++   M K    + 
Sbjct: 375 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 434

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TY+ LI+  G  G + +ME L+Q +    + P        + AYS+     +  ++ +
Sbjct: 435 VRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRK 494

Query: 204 EMI 206
           EM+
Sbjct: 495 EML 497



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+EM    + P   ++  ++  + K G++     + +QM   GLKP+    N +L
Sbjct: 33  DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLL 92

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G+  +   +L  M       D  TY+IL +   R G  + M  LF     K LK
Sbjct: 93  SGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF----GKYLK 148

Query: 177 PDVV----TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             V     T +  L    +        E+ + +++AG  P       LI+      ++E
Sbjct: 149 NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 207



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 72/181 (39%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           ++M   G+ P   ++ +LL+   + G + +   ++++M    + PD F  + + +   R 
Sbjct: 74  DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 133

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  + M  +     K        T +IL+N   + G +   E + QSL    L P  V +
Sbjct: 134 GDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 193

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + +  Y +          F +M      PD  T   LI+     ++I     L+  M  
Sbjct: 194 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQD 253

Query: 243 D 243
           +
Sbjct: 254 N 254



 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +   +    + P   S+  L++A    GN+ K   +  +MHK G+K      + 
Sbjct: 381 ISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQ 440

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G  G+  +ME +   M + +     + +NI++  Y + G   K E L + +  KR
Sbjct: 441 LISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKR 500

Query: 175 LKPD 178
              D
Sbjct: 501 NNHD 504



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 50/119 (42%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           P+ F  N ++    R G+     EV   M + +   +  TYN +I+ + +GG +E    L
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
              +    LKP+ +T+   L+   R         + +EM      PDG T  +L    S
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 131


>gi|356540373|ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 881

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 103/206 (50%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ V +EM  LGI  + +++ + L  Y   G +      IN+M + G   ++F+ + ++ 
Sbjct: 173 ANGVLKEMDDLGIWRSKETYQIFLDYYVGAGRLEDTWSTINEMKQKGFPLNSFMYSKVVG 232

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y   G ++K  EVL  + +   + D    N +I+ +G+ G +++   LF+ +  + ++P
Sbjct: 233 IYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRP 292

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++VTW S +  + ++  + +   +F +M + G YPD      +IS    + + + +    
Sbjct: 293 NIVTWNSLIKWHCKEGDFMKAFHLFTDMQEQGLYPDPKIFVTIISCLGEQGKWDIIKKYF 352

Query: 238 RTM----HKDMKTALPIYFNLYGEKG 259
            +M    +K+      +  ++YG+ G
Sbjct: 353 ESMKIRGNKEYGAVYAVLVDIYGQYG 378



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 5/182 (2%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +FV I S       +      FE MK  G       + +L+  Y + G        + 
Sbjct: 329 PKIFVTIISCLGEQGKWDIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNAGECVQ 388

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +   G+     +   + N Y + G  E++  VL  ME      +I   N+LIN +G  G
Sbjct: 389 ALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAG 448

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   ++  +    + PDVVT+T+ + A+ R K +     I++EM + GC PD    +
Sbjct: 449 RYMEAISVYHHIKESGVSPDVVTYTTLMKAFIRAKKFDEVPIIYKEMENDGCTPDRKARQ 508

Query: 219 VL 220
           +L
Sbjct: 509 ML 510



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 85/189 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +F +M+  G+ P  K  + +++   + G     +     M   G K    V   
Sbjct: 310 FMKAFHLFTDMQEQGLYPDPKIFVTIISCLGEQGKWDIIKKYFESMKIRGNKEYGAVYAV 369

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++YG+ G+F+   E + A++        S + +L N Y + G  E++  + Q + A+ 
Sbjct: 370 LVDIYGQYGKFQNAGECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEG 429

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P++V     + A+     Y   + ++  + ++G  PD  T   L+ A     + ++V 
Sbjct: 430 IEPNIVMLNMLINAFGNAGRYMEAISVYHHIKESGVSPDVVTYTTLMKAFIRAKKFDEVP 489

Query: 235 TLVRTMHKD 243
            + + M  D
Sbjct: 490 IIYKEMEND 498



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 4/210 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D  +   EMK+ G       +  ++  Y   G   K   V+ ++ + G+  DT + NS
Sbjct: 205 LEDTWSTINEMKQKGFPLNSFMYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNS 264

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ G+ ++  ++   M+K     +I T+N LI  + + G   K   LF  +  + 
Sbjct: 265 IIDTFGKYGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFHLFTDMQEQG 324

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD   + + ++    +  +    + FE M   G    G    VL+       + +   
Sbjct: 325 LYPDPKIFVTIISCLGEQGKWDIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNAG 384

Query: 235 TLVRTMHKDMKTALPIYF----NLYGEKGV 260
             V+ +  +     P  F    N Y ++G+
Sbjct: 385 ECVQALKSEGVLVSPSIFCVLANAYAQQGL 414



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 84/191 (43%), Gaps = 4/191 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHML--LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +  A  V EE++  GI+  + +H+   ++  + K G + +   +  +M K G++P+    
Sbjct: 240 WKKAIEVLEEIRERGIS--LDTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRPNIVTW 297

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           NS++  + + G F K   + T M++     D   +  +I+  G  G  + ++  F+S+  
Sbjct: 298 NSLIKWHCKEGDFMKAFHLFTDMQEQGLYPDPKIFVTIISCLGEQGKWDIIKKYFESMKI 357

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +  K     +   +  Y +   ++   E  + +   G         VL +A + +   EQ
Sbjct: 358 RGNKEYGAVYAVLVDIYGQYGKFQNAGECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQ 417

Query: 233 VTTLVRTMHKD 243
           V  +++ M  +
Sbjct: 418 VIMVLQIMEAE 428



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 8/175 (4%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P + S   L++A+++  +  +   +  Q+H+    PD +  +  L         ++ 
Sbjct: 622 GSQPDIVSWTALISAFAEQ-DPEQAFLLFCQLHRQSYLPDWYTFSIALKASTYFATEQRA 680

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            ++ + + K  +  D    N LI+ Y   G +   + +F  +  +    D+V+W S L +
Sbjct: 681 MDIHSQVIKEGFQEDTVLCNALIHAYAWCGSLALSKQVFNEMGCR----DLVSWNSMLKS 736

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           Y+     +  +E+F+ M       D  T  VL+SACS    +++   L   M  D
Sbjct: 737 YAIHGQTKDAVELFQRM---NVCTDSATFVVLLSACSHVGFVDEGVKLFNCMSDD 788


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 84/189 (44%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y      V+EEM+R GI P + +  +L     K G+  K    + +M + G  PD    N
Sbjct: 283 YTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYN 342

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y R G+ +    +   M +     D+ +Y  L+N   + G + +   LF  +  +
Sbjct: 343 TLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHR 402

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD+VT+ + +  Y ++   +    +  +MI  G  PD  T  VL+     E +    
Sbjct: 403 GLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSA 462

Query: 234 TTLVRTMHK 242
             LV  + +
Sbjct: 463 LNLVVELQR 471



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 88/179 (49%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  M R+G  PT+ +   LL    K     +C  V  +M + G+ P+ +  N + ++  +
Sbjct: 256 FRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCK 315

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G   K+ + L  ME+  +  DI TYN LIN Y R G ++    L++ +  + + PD+V+
Sbjct: 316 DGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVS 375

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +T+ +    ++   R   ++F  M+  G  PD  T   LI     E ++++  +L+  M
Sbjct: 376 YTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDM 434



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 7/200 (3%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ AY + G V +      +M + G  P     N +LN   +L   ++  EV   ME+ 
Sbjct: 238 MLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERF 297

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
             A ++ T+NIL ++  + G   K+    + +  +   PD+VT+ + + +Y RK      
Sbjct: 298 GIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDA 357

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-RTMHKDMKTALPIYFNLY-- 255
             +++ M   G  PD  +   L++    E ++ +   L  R +H+ +   +  Y  L   
Sbjct: 358 FYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHG 417

Query: 256 ----GEKGVARSNLGQYIGN 271
               G+   +RS L   I N
Sbjct: 418 YCKEGKMQESRSLLHDMIWN 437



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 40/247 (16%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +F  M   G++P + ++  L+  Y K G + +   +++ M  +G+ PD+F    ++
Sbjct: 391 EAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLV 450

Query: 117 NLYGRLGQFEKM-----------------------------------EEVLTAMEKGSYA 141
             YG+ G+F                                      + +L  M +  + 
Sbjct: 451 EGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHK 510

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            ++  YN LI  + +   I +   L   +  K +KP++ T+ + J   SR         +
Sbjct: 511 XELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESL 570

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN----LYGE 257
             EM+ +G  PD    + L      E+ I++  +L+    K+ +      FN    +   
Sbjct: 571 VGEMVASGXLPDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALIRITSA 630

Query: 258 KG-VARS 263
           KG +ARS
Sbjct: 631 KGDIARS 637



 Score = 37.7 bits (86), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 75/180 (41%), Gaps = 2/180 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E M + G    ++ +  L+ ++ +   +A+   +  +M    +KP+     ++J 
Sbjct: 497 AKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJG 556

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK- 176
              RL +  + E ++  M       D+     L   Y R   I+K E L  S  AK  + 
Sbjct: 557 CLSRLSRSMEGESLVGEMVASGXLPDLEICRALFYGYCRENDIDKAESLL-SFXAKEFQI 615

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D  ++ + +   S K    R LEI + M+  G  P+  T K +I       +++  + +
Sbjct: 616 HDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNPLTCKYVIDGLWKARRVDSASLM 675


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 106/215 (49%), Gaps = 11/215 (5%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+     S+Y         +A  +F  ++  G+ P   ++ +++  YSK G V +   
Sbjct: 469 VPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVN 528

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++++M ++G +PD  V+NS+++   + G+ ++  ++   M+    +  + TYN L++  G
Sbjct: 529 LLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLG 588

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G ++K   LF+S+  K+  P+ +++ + L  + +       L++F +M    C PD  
Sbjct: 589 KEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVL 648

Query: 216 TAKVLISACSSEDQIEQV----TTLVRTMHKDMKT 246
           T   +I     E+++         L ++MH D  T
Sbjct: 649 TYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVT 683



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 89/174 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   FE+MK  GI P + +    L + ++ G + + + + N + ++GL PD+   N M+ 
Sbjct: 456 AVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMK 515

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++GQ ++   +L+ M +     D+   N LI+   + G +++   +F  +   +L P
Sbjct: 516 CYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSP 575

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            VVT+ + L+   ++   ++ +E+FE MI   C P+  +   L+      D++E
Sbjct: 576 TVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVE 629



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 6/162 (3%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +F+ M   GI P +KS+ +L+      G V +     N++  +GL PD    N ++N
Sbjct: 947  ACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIIN 1006

Query: 118  LYGRLGQFEKMEEVLT---AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
                LG+ ++MEE L     M       D+ TYN L+   G  G +E+ + +++ L    
Sbjct: 1007 ---GLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAG 1063

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            L+PDV T+ + +  YS  +       +++ M+  GC P+ GT
Sbjct: 1064 LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGT 1105



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A+ +F++  K+LGI+PT+ S+  L+    +     K   +   M   G  PD F  N +L
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++G+ G+  ++ E+   M       D  TYNI+I+   +   ++K    F  L +   +
Sbjct: 831 AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P   T+   +   ++       + +FEEM D GC P+     +LI+        E    L
Sbjct: 891 PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 237 VRTM 240
            + M
Sbjct: 951 FKRM 954



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 1/191 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A A F+ M++ GI P + ++  L+    + G +     +++ M   G++P  +   +
Sbjct: 383 FDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYIT 442

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++ +G+ G+  K  E    M+      +I   N  +      G + + + +F  L    
Sbjct: 443 FIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENG 502

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD VT+   +  YS+       + +  EMI  GC PD      LI +     ++++  
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAW 562

Query: 235 TLVRTMHKDMK 245
            +   M KDMK
Sbjct: 563 QMFDRM-KDMK 572



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 85/197 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  + + M+ +G+ PT  +++  +  + K+G   K      +M   G+ P+    N+ L
Sbjct: 420 DALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASL 479

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                +G+  + + +   + +   A D  TYN+++  Y + G +++   L   +     +
Sbjct: 480 YSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCE 539

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV+   S + +  +        ++F+ M D    P   T   L+S    E ++++   L
Sbjct: 540 PDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIEL 599

Query: 237 VRTMHKDMKTALPIYFN 253
             +M     +   I FN
Sbjct: 600 FESMIXKKCSPNTISFN 616



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           + + I S +  +A  V+  M   G+ P++K++  L+ A  K  +      ++ +M   GL
Sbjct: 199 IHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGL 258

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+ +     + + GR G+ ++  E+   M+      D+ TY +LI+     G +E  + 
Sbjct: 259 RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKE 318

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-C 224
           LF  + A   KPD V + + L  ++         E + +M   G  PD  T  +L+   C
Sbjct: 319 LFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLC 378

Query: 225 SSEDQIEQVTTL 236
            + D  E   T 
Sbjct: 379 KARDFDEAFATF 390



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D  AVFE M++  I   + +++ +  A S  G + +   V+N+M K+G   + +  N ++
Sbjct: 140 DMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLI 199

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +L  + G   +  EV   M        + TY+ L+   G+    E +  L + +    L+
Sbjct: 200 HLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLR 259

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V T+T  +    R        EIF  M D GC PD  T  VLI A  +  Q+E    L
Sbjct: 260 PNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKEL 319

Query: 237 VRTMHKD 243
              M  +
Sbjct: 320 FVKMKAN 326



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 75/182 (41%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            + +EM+ LG+ P + +  + +    + G + +   +  +M   G  PD      +++  
Sbjct: 248 VLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDAL 307

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              GQ E  +E+   M+   +  D   Y  L++ +   G ++  +  +  + A    PDV
Sbjct: 308 CNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDV 367

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+T  +    + + +      F+ M   G  P+  T   LI       +IE    L+ T
Sbjct: 368 VTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDT 427

Query: 240 MH 241
           M 
Sbjct: 428 ME 429



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 72   PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
            PT +++  L+   +K G + +   +  +M   G KP+  + N ++N YG++G  E   ++
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 132  LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
               M       D+ +Y IL++     G +++    F  L +  L PD + +   +    +
Sbjct: 951  FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGK 1010

Query: 192  KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247
             +     L ++ EM + G  PD  T   L+        +EQ     + M+++++ A
Sbjct: 1011 SQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQ----AKRMYEELQLA 1062



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 79/182 (43%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           + +M+  G  P + +  +L+    K  +  +     + M K G+ P+    N+++    R
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLR 414

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+ E   ++L  ME         TY   I+ +G+ G   K    F+ + AK + P++V 
Sbjct: 415 AGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             + L + +     R    +F  + + G  PD  T  +++   S   Q+++   L+  M 
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534

Query: 242 KD 243
           ++
Sbjct: 535 RN 536



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/179 (18%), Positives = 76/179 (42%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  +F++MK +G  P   +  +LL  + K+G + +   +  +M     KPD    N
Sbjct: 803 YTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYN 862

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++   +    +K  +    +    +     TY  LI+   + G +E+   LF+ +   
Sbjct: 863 IVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDY 922

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             KP+   +   +  Y +        ++F+ M++ G  PD  +  +L+       ++++
Sbjct: 923 GCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDE 981



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 7/172 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F +MK  G  P    ++ LL  ++  G++   +   +QM   G  PD      
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++  +   F++       M K     ++ TYN LI    R G IE    L  ++ +  
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVG 432

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           ++P   T+ + +  + +     + +E FE+M   G  P+       I AC++
Sbjct: 433 VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPN-------IVACNA 477



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 68/153 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V  +M++ G      S+  L+    ++G   +   V  +M   GLKP     ++++   G
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALG 238

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +    E +  +L  ME      ++ T+ I I + GR G I++   +F+ +  +   PD+V
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLV 298

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           T+T  + A           E+F +M   G  PD
Sbjct: 299 TYTVLIDALCNAGQLENAKELFVKMKANGHKPD 331



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL---GQ 124
           L  T T    +  L  + K  ++A    V   M K  ++ D   +++ L ++  L   G 
Sbjct: 119 LHTTETCNFMLEFLRVHDKVEDMA---AVFEFMQKKIIRRD---LDTYLTIFKALSIRGG 172

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +M  VL  M K  +  +  +YN LI++  + GF  +   +++ + ++ LKP + T+++
Sbjct: 173 LRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSA 232

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            + A  +K+     + + +EM D G  P+  T  + I       +I++   + R M  +
Sbjct: 233 LMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE 291



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 62   FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS-MLNLYG 120
            F E+K  G+ P   ++  ++    K+  + +   + N+M   G+ PD +  NS MLNL G
Sbjct: 986  FNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNL-G 1044

Query: 121  RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              G  E+ + +   ++      D+ TYN LI  Y      E    +++++      P++ 
Sbjct: 1045 LAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIG 1104

Query: 181  TW 182
            T+
Sbjct: 1105 TY 1106



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 44/96 (45%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +A A++ EM+  GI P + ++  L+      G V + + +  ++  +GL+PD F  N+++
Sbjct: 1016 EALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALI 1075

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              Y      E    V   M       +I TY  L N
Sbjct: 1076 RGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA-------------------------- 91
           A +V ++M+  G  P   S+ LLL  YSK GNV                           
Sbjct: 551 AESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVL 610

Query: 92  ---KC------EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
              KC      E   +Q+ K G KPD  VINSML+++ R   F K  E+L  + +     
Sbjct: 611 SNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQP 670

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           ++ TYN L+++Y R     K E + + +     +PDVV++ + +  + RK L +  + + 
Sbjct: 671 NLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVL 730

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            EM   G  P   T    +S  +  +  ++   ++R M
Sbjct: 731 SEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFM 768



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 100/210 (47%), Gaps = 8/210 (3%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           +PS  +L   +L  H           +       F+++++ G  P +     +L+ +S+ 
Sbjct: 599 FPSWILLRTLVLSNHKCR--------HLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRN 650

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
              +K   +++ +H+ GL+P+ F  N +++LY R  +  K EEVL  ++      D+ +Y
Sbjct: 651 KMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSY 710

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           N +I  + R G +++   +   +  K ++P +VT+ + L+ Y+  +L+    E+   MI+
Sbjct: 711 NTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIE 770

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             C P   T K+L+       + E+    V
Sbjct: 771 HNCRPSELTYKILVDGYCKAGKHEEAMDFV 800



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 109/235 (46%), Gaps = 36/235 (15%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN------------ 89
           +T  L  +  S  +  A  +F++M+ +G+ PT+ ++ ++L  Y K G             
Sbjct: 219 YTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEM 278

Query: 90  ---------------VAKC--EGVINQMHK-------SGLKPDTFVINSMLNLYGRLGQF 125
                          ++ C  EG++++  K       +G KP T + NSML ++G+ G +
Sbjct: 279 RSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIY 338

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
            +   +L  ME  +   D  TYN L   Y R GF+++   +  ++ +K + P+ +T+T+ 
Sbjct: 339 TEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTV 398

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + AY +       L +F +M D GC P+  T   +++    + + E V  ++  M
Sbjct: 399 IDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 453



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 78/186 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A     E+K  G  P    +  +L  + K G   +   ++ +M  +   PD+   N 
Sbjct: 303 LDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNE 362

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +   Y R G  ++   V+  M       +  TY  +I+ YG+ G  +    LF  +    
Sbjct: 363 LAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLG 422

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+ S LA   +K      +++  EM   GC P+  T   +++ CS E +   V 
Sbjct: 423 CAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVN 482

Query: 235 TLVRTM 240
            ++R M
Sbjct: 483 KVLREM 488



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 1/168 (0%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L AY+++G   +   + ++M   GL P     N ML++YG++G+ + ++ E+L
Sbjct: 216 VRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELL 275

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I+  GR G +++       L     KP  V + S L  + + 
Sbjct: 276 DEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKA 335

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +Y   L I +EM D  C PD  T   L +       +++   ++ TM
Sbjct: 336 GIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTM 383



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 36/245 (14%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            + V  EMK  G  P   +   L+++Y++ G+      +  +M KSG  P     N++LN
Sbjct: 481 VNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLN 540

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF---IEK------------ 162
                G ++  E V+  M+   +  + ++Y++L++ Y + G    IEK            
Sbjct: 541 ALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFP 600

Query: 163 --------------------MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
                               ME  F  L     KPD+V   S L+ +SR K++ +  E+ 
Sbjct: 601 SWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREML 660

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVAR 262
             + + G  P+  T   L+     ED+  +   +++ +   +     + +N    KG  R
Sbjct: 661 HFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTV-IKGFCR 719

Query: 263 SNLGQ 267
             L Q
Sbjct: 720 KGLMQ 724



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A ++ +EM+     P   ++  L   Y + G + +   VI+ M   G+
Sbjct: 329 LQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGV 388

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+     ++++ YG+ G+ +    + + M+    A ++ TYN ++ + G+    E +  
Sbjct: 389 MPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIK 448

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +   +      P+  TW + LA  S +  +    ++  EM + G  PD  T   LIS+  
Sbjct: 449 VLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYA 508

Query: 224 -CSSE 227
            C SE
Sbjct: 509 RCGSE 513



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/219 (19%), Positives = 100/219 (45%), Gaps = 4/219 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            ++ + +  +  AV + M   G+ P   ++  ++ AY K G       + ++M   G  P
Sbjct: 366 TYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAP 425

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           + +  NS+L + G+  + E + +VL  M+    A + +T+N ++ +    G    +  + 
Sbjct: 426 NVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVL 485

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +     +PD  T+ + +++Y+R        +++ EM+ +G  P   T   L++A +  
Sbjct: 486 REMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHR 545

Query: 228 DQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKGVAR 262
              +   ++++ M     K  +T+  +  + Y + G  R
Sbjct: 546 GDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVR 584



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 68/156 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   V  EMK  G  P   +   +L   S+ G       V+ +M   G +PD    N+++
Sbjct: 445 DVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLI 504

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G      ++   M K  +   ++TYN L+N     G  +  E + Q +  K  K
Sbjct: 505 SSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFK 564

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           P+  +++  L  YS+    R   ++ +E+ D   +P
Sbjct: 565 PNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFP 600



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 6/189 (3%)

Query: 56  SDAHAVFEEMKRLGITP---TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
            DA  +F +MK LG  P   T  S + +L   S+T +V K   V+ +M  +G  P+    
Sbjct: 409 DDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIK---VLCEMKLNGCAPNRATW 465

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N+ML +    G+   + +VL  M+   +  D  T+N LI+ Y R G       ++  +  
Sbjct: 466 NTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVK 525

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
               P V T+ + L A + +  ++    + ++M   G  P+  +  +L+   S    +  
Sbjct: 526 SGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRG 585

Query: 233 VTTLVRTMH 241
           +  + + ++
Sbjct: 586 IEKVEKEIY 594



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 1/130 (0%)

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           L+ D  V+  M+ + GR  Q     ++   +    Y+ D+  Y  +++ Y R G  ++  
Sbjct: 177 LRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAI 236

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            LF  +    L P +VT+   L  Y +  + + R LE+ +EM   G   D  T   +ISA
Sbjct: 237 DLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISA 296

Query: 224 CSSEDQIEQV 233
           C  E  +++ 
Sbjct: 297 CGREGMLDEA 306


>gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 580

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 84/149 (56%), Gaps = 1/149 (0%)

Query: 62  FEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           F++MK +    P + ++ +LL A+++  NV +   +   + +S + PD +  N +++ YG
Sbjct: 234 FQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYG 293

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G   +ME VL  M+      D+ T+N+LI+ YG+     KME +F+SL   + +P + 
Sbjct: 294 KNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQAFGKMEQVFKSLLHSKERPSLP 353

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           T+ S +  Y + +L  +  ++F++M D G
Sbjct: 354 TFNSMILNYGKARLKDKAEDVFKKMTDMG 382



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 7/208 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+++ F  +   Y       +  AV   MK     P + +  LL+ +Y K     K E 
Sbjct: 279 SPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQAFGKMEQ 338

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V   +  S  +P     NSM+  YG+    +K E+V   M    Y     T+  +I +YG
Sbjct: 339 VFKSLLHSKERPSLPTFNSMILNYGKARLKDKAEDVFKKMTDMGYTLSFVTHESMIYMYG 398

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
               + +   LF  L   ++   V T  + L  Y    L +    +FE  I    +PD  
Sbjct: 399 FCDCVSRAAQLFDELVESKVHIKVSTLNAMLDVYCLNGLPQEADSLFERAISIKIHPDSS 458

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKD 243
           T K+L  A +  +Q E +  L++ M KD
Sbjct: 459 TFKLLYKAYTKANQKELLDKLLKHMDKD 486



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 90/195 (46%), Gaps = 18/195 (9%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR-----------LGQFEKM 128
           L++   K G       + ++M  +G +PDT V N+++  + R           +G F+KM
Sbjct: 178 LISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLRSRDKIKALAKAIGYFQKM 237

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           +     ME+     +I TYNIL+  + +   +E++  LF+ L    + PD+ T+   + A
Sbjct: 238 K----GMER--CKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDA 291

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT-MHKDMKTA 247
           Y +  + R    +   M    C PD  T  +LI +   +    ++  + ++ +H   + +
Sbjct: 292 YGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQAFGKMEQVFKSLLHSKERPS 351

Query: 248 LPIYFNLYGEKGVAR 262
           LP + ++    G AR
Sbjct: 352 LPTFNSMILNYGKAR 366


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 2/217 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +  EM+  G+ PT+++   L+ AY +TG + KC  V+++M ++GLKP+     S
Sbjct: 289 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 348

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + + G+  +   +L  M       +   YN +I+ Y   G  ++   L + + +  
Sbjct: 349 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 408

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P +VT+   +     +       EI   + +    PD  +   LISAC     I++  
Sbjct: 409 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 468

Query: 235 TLVRTMHK-DMKTALPIYFNLY-GEKGVARSNLGQYI 269
            L + MHK  +K+ +  Y  L  G  G  R N  +Y+
Sbjct: 469 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 505



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 86/199 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  V + +   G+ PT   +  L+  Y +TG +        QM    +KPD    N++
Sbjct: 220 SIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL 279

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +  +    +++L  M+       + T+N LI+ YGR G +EK   +   +    L
Sbjct: 280 INGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 339

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+VV++ S + A+ +       + I ++M      P+      +I A       +Q   
Sbjct: 340 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 399

Query: 236 LVRTMHKDMKTALPIYFNL 254
           LV  M  +  +   + +NL
Sbjct: 400 LVEKMKSNGISPSIVTYNL 418



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 84/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A + F +MK   I P   ++  L+    K   +   + ++ +M  +G+ P     N++++
Sbjct: 257 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 316

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR GQ EK   VL+ M++     ++ +Y  ++N + + G I +   +   +  K + P
Sbjct: 317 AYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLP 376

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   + + + AY       +   + E+M   G  P   T  +LI    ++ QI +   ++
Sbjct: 377 NAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 436

Query: 238 RTM 240
            ++
Sbjct: 437 NSL 439



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)

Query: 49  FIFSIYFS------DAHA---VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           F +SI F       D+ A   +F +  + G+T    +  +LL    K G V+  E V+  
Sbjct: 169 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 228

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +  +GL P   + N+++N Y + G+ E        M+      D  TYN LIN   +   
Sbjct: 229 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 288

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I   + L   +    + P V T+ + + AY R     +C  +  EM + G  P+  +   
Sbjct: 289 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 348

Query: 220 LISA-CSSEDQIEQVTTLVRTMHKDMKTALPIY 251
           +++A C +    E V  L    HKD+     +Y
Sbjct: 349 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVY 381



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 24  NYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA 83
           + LP    +  I    ++H PN   FI            E+MK  GI+P++ ++ LL+  
Sbjct: 373 DVLPNAQVYNAIIDAYVEHGPNDQAFIL----------VEKMKSNGISPSIVTYNLLIKG 422

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                 +++ E +IN +    L PD    N++++     G  +K  ++   M K    + 
Sbjct: 423 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 482

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TY+ LI+  G  G + +ME L+Q +    + P        + AYS+     +  ++ +
Sbjct: 483 VRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRK 542

Query: 204 EMI 206
           EM+
Sbjct: 543 EML 545



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 81/189 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +  A+ +EM    + P   ++ +L    S+ G+      +  +  K+G+    +  + 
Sbjct: 149 MGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSI 208

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN   + G+    EEVL ++           YN LIN Y + G +E     F  + ++ 
Sbjct: 209 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 268

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPD +T+ + +    + +      ++  EM D G  P   T   LI A     Q+E+  
Sbjct: 269 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 328

Query: 235 TLVRTMHKD 243
            ++  M ++
Sbjct: 329 IVLSEMQEN 337



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 1/182 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINS 114
           +D    F  +   G  P   +    + A    G++ +  G++ +M + G  P + F  N 
Sbjct: 9   ADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNV 68

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    R G+     EV   M + +   +  TYN +I+ + +GG +E    L   +    
Sbjct: 69  VIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG 128

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKP+ +T+   L+   R         + +EM      PDG T  +L    S     + + 
Sbjct: 129 LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAML 188

Query: 235 TL 236
           +L
Sbjct: 189 SL 190



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA  VF+EM    + P   ++  ++  + K G++     + +QM   GLKP+    N +
Sbjct: 80  GDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVL 139

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   R G+  +   +L  M       D  TY+IL +   R G  + M  LF     K L
Sbjct: 140 LSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF----GKYL 195

Query: 176 KPDVV----TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           K  V     T +  L    +        E+ + +++AG  P
Sbjct: 196 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 236



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 72/181 (39%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           ++M   G+ P   ++ +LL+   + G + +   ++++M    + PD F  + + +   R 
Sbjct: 122 DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 181

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  + M  +     K        T +IL+N   + G +   E + QSL    L P  V +
Sbjct: 182 GDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 241

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + +  Y +          F +M      PD  T   LI+     ++I     L+  M  
Sbjct: 242 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQD 301

Query: 243 D 243
           +
Sbjct: 302 N 302



 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +   +    + P   S+  L++A    GN+ K   +  +MHK G+K      + 
Sbjct: 429 ISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQ 488

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G  G+  +ME +   M + +     + +NI++  Y + G   K E L + +  KR
Sbjct: 489 LISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKR 548

Query: 175 LKPD 178
              D
Sbjct: 549 NNHD 552


>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 503

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 1/161 (0%)

Query: 62  FEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           F++MK +    P + ++ +LL A+++  NV +   +   + +S + PD +  N +++ YG
Sbjct: 171 FQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYG 230

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G   +ME VL  M+      D+ T+N+LI+ YG+     KME +F+SL   + +  + 
Sbjct: 231 KNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRSKERASLP 290

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           T+ S +  Y + +L  +  ++F+ M D G  P   T + LI
Sbjct: 291 TFNSMILNYGKARLKDKAEDVFKRMTDMGYTPSFVTHESLI 331



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 35/220 (15%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           +++F+++    ++P + +   ++ AY K G + + E V+ +M  +  KPD    N +++ 
Sbjct: 204 NSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDS 263

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           YG+  +F KME+V  ++ +    A + T+N +I  YG+    +K E +F+ +      P 
Sbjct: 264 YGKKQEFGKMEQVFKSLLRSKERASLPTFNSMILNYGKARLKDKAEDVFKRMTDMGYTPS 323

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEE---------------MIDAGC------------- 210
            VT  S +  Y       R  ++F+E               M+D  C             
Sbjct: 324 FVTHESLIYMYGFCDCVSRAAQLFDELVESKAHIKVSTLNAMLDVYCINGLPQEADSLFE 383

Query: 211 -------YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
                  YPD  T K+L  A +  +Q E +  L++ M KD
Sbjct: 384 RANSIKIYPDSSTFKLLYKAYTKANQKELLDKLLKHMDKD 423



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 24/198 (12%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML--NLYGR---------LGQFEKM 128
           L++   K G       + ++M  +G +PDT V N+++  +L+ R         +G F+KM
Sbjct: 115 LISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLHSRDKTKALAKAIGYFQKM 174

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           +     ME+     +I TYNIL+  + +   +E++  LF+ L    + PD+ T+   + A
Sbjct: 175 K----GMERCK--PNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDA 228

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ---IEQV-TTLVRTMHKDM 244
           Y +  + R    +   M    C PD  T  +LI +   + +   +EQV  +L+R+     
Sbjct: 229 YGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRSKE--- 285

Query: 245 KTALPIYFNLYGEKGVAR 262
           + +LP + ++    G AR
Sbjct: 286 RASLPTFNSMILNYGKAR 303



 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 71/180 (39%), Gaps = 7/180 (3%)

Query: 41  QHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           Q  P+L  F   I        F     VF+ + R     ++ +   ++  Y K     K 
Sbjct: 249 QCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRSKERASLPTFNSMILNYGKARLKDKA 308

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           E V  +M   G  P      S++ +YG      +  ++   + +      +ST N ++++
Sbjct: 309 EDVFKRMTDMGYTPSFVTHESLIYMYGFCDCVSRAAQLFDELVESKAHIKVSTLNAMLDV 368

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           Y   G  ++ + LF+   + ++ PD  T+     AY++        ++ + M   G  P+
Sbjct: 369 YCINGLPQEADSLFERANSIKIYPDSSTFKLLYKAYTKANQKELLDKLLKHMDKDGIVPN 428


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 36/195 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN------------------------- 89
           +  A  +FE+MK  G+ PT+ ++ ++L  Y K G                          
Sbjct: 253 YKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCT 312

Query: 90  --VAKC--EGVINQMHK-------SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
             ++ C  EG++++  +       +G KP T   NSML ++G+ G + +   +L  ME  
Sbjct: 313 TVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDN 372

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +   D  TYN L+  Y R GF ++   +  ++ +K + P+ +T+T+ + AY +     + 
Sbjct: 373 NCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKA 432

Query: 199 LEIFEEMIDAGCYPD 213
           LE+F +M + GC P+
Sbjct: 433 LEVFGQMKELGCVPN 447



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA-------------------------- 91
           A +V  +M++ G  P   S+ LLL  YSK GNV                           
Sbjct: 572 AESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVL 631

Query: 92  ---KC------EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
              KC      E   +Q+  +G K D  VINSML+++ R  + EK  E+L  +       
Sbjct: 632 TNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQP 691

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           ++ TYN LI++Y R G   K E + + +    + PDVV++ + +  + +K L +  + I 
Sbjct: 692 NLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRIL 751

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            EM   G  P   T    +S  +      +   ++R M
Sbjct: 752 SEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYM 789



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A  +F+ +     +  +K+   +L AY++TG   +   +  +M ++GL P     N 
Sbjct: 218 YSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNV 277

Query: 115 MLNLYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ML++YG++G+ +  + E+L  M       D  T   +I+  GR G +++    F  L   
Sbjct: 278 MLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLN 337

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KP   T+ S L  + +  +Y   L I +EM D  C PD  T   L++A       ++ 
Sbjct: 338 GYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEG 397

Query: 234 TTLVRTMHKDMKTALP------IYFNLYGEKGVARSNL 265
             ++ TM    K  +P         N YG+ G A   L
Sbjct: 398 AAVIDTMAS--KGVMPNAITYTTVINAYGKAGDADKAL 433



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 85/162 (52%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +++  G    M     +L+ + +   + K   +++ +H SGL+P+    NS+++LY R
Sbjct: 646 FHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYAR 705

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G   K EE+L  ++    + D+ +YN +I  + + G +++   +   + A  ++P  +T
Sbjct: 706 VGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPIT 765

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + + ++ Y+   L+    E+   MI+ GC P+  T K++I  
Sbjct: 766 FNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDG 807



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 3/191 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A  + +EM+     P   ++  L+ AY + G   +   VI+ M   G+
Sbjct: 350 LQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGV 409

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+     +++N YG+ G  +K  EV   M++     ++ TYN ++ + G+    E M  
Sbjct: 410 MPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIK 469

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +   +      PD +TW + LA    K   +   ++  EM + G  PD  T   LISA  
Sbjct: 470 ILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYG 529

Query: 224 -CSSEDQIEQV 233
            C SE  + ++
Sbjct: 530 RCGSEVDVAKM 540



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F+++K  G  P   ++  +L  + K G   +   ++ +M  +  +PD    N 
Sbjct: 324 LDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNE 383

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R G  ++   V+  M       +  TY  +IN YG+ G  +K   +F  +    
Sbjct: 384 LVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELG 443

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+V T+ + L    ++      ++I  +M   GC PD  T   +++ C  + + + V+
Sbjct: 444 CVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVS 503

Query: 235 TLVRTM 240
            ++R M
Sbjct: 504 QVLREM 509



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 99/218 (45%), Gaps = 4/218 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           ++ + +  +  AV + M   G+ P   ++  ++ AY K G+  K   V  QM + G  P+
Sbjct: 388 YVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPN 447

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N++L L G+  + E M ++L  M+      D  T+N ++ + G  G  + +  + +
Sbjct: 448 VCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLR 507

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +     +PD  T+ + ++AY R        +++ EM+ AG  P   T   L++A +   
Sbjct: 508 EMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRG 567

Query: 229 QIEQVTTLVRTMHKD----MKTALPIYFNLYGEKGVAR 262
             +   ++V  M K      +T+  +  + Y + G  R
Sbjct: 568 NWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVR 605



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 95/234 (40%), Gaps = 35/234 (14%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   ++ EM   G TP + ++  LL A ++ GN    E V+  M K G KP+    + +L
Sbjct: 536 DVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLL 595

Query: 117 NLYGRLG-----------------------------------QFEKMEEVLTAMEKGSYA 141
           + Y + G                                   Q + ME     ++   Y 
Sbjct: 596 HCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYK 655

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            D+   N +++++ R   +EK   +   +    L+P++VT+ S +  Y+R     +  E+
Sbjct: 656 LDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEM 715

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
            +++ ++G  PD  +   +I     +  +++   ++  M  +     PI FN +
Sbjct: 716 LKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTF 769



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 70/165 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +  +MK  G  P   +   +L    + G       V+ +M   G +PD    N+++
Sbjct: 466 DMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLI 525

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YGR G    + ++   M    +   I+TYN L+N   R G  +  E +   +  K  K
Sbjct: 526 SAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFK 585

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           P+  +++  L  YS+    R   ++  E+ D   +P     + L+
Sbjct: 586 PNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLV 630



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 5/142 (3%)

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           +K D   +  M+ + GR  Q+    ++   +    Y+ D+     +++ Y R G  ++  
Sbjct: 198 MKVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAI 257

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +F+ +    L P +VT+   L  Y +  + +   LE+ +EM   G   D  T   +ISA
Sbjct: 258 EIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISA 317

Query: 224 CSSEDQIEQVTTLVRTMHKDMK 245
           C  E  +++     R    D+K
Sbjct: 318 CGREGILDE----ARRFFDDLK 335


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 33/235 (14%)

Query: 17  APHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEE----------MK 66
           +PH   F+ LPY          + +  P     I++I F   HA+  +          M 
Sbjct: 19  SPH---FDGLPYA-------ISVFETIPEPNQLIWNIMFR-GHALSSDPVSALKLYVVMI 67

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE 126
            LG+ P   +   LL + +K+    + + +   + K G   D +V  S++++Y + G+ E
Sbjct: 68  SLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLE 127

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             ++V    ++ S+  D+ +Y  LI  Y   G+IE  + +F  +P K    DVV+W + +
Sbjct: 128 DAQKVF---DRSSHR-DVVSYTALITGYASRGYIESAQKMFDEIPIK----DVVSWNAMI 179

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + Y+    Y++ LE+F+EM+     PD  T   ++SAC+    IE    L R +H
Sbjct: 180 SGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIE----LGRQVH 230



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  +F+E+    +     S   +++ Y++TGN  K   +  +M K+ +KPD   + 
Sbjct: 156 YIESAQKMFDEIPIKDVV----SWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMA 211

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   + G  E   +V + +    + +++   N LI++Y + G +E    L + L  K
Sbjct: 212 TVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNK 271

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
               DV++W + +  Y+   LY+  L +F+EM+ +G  P+  T   ++ AC+
Sbjct: 272 ----DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 319



 Score = 41.2 bits (95), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 7/152 (4%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK---GSYAADISTYNI-LI 151
           +  +M +SG  P+   + S+L     LG  +    +   ++K   G    + S+    LI
Sbjct: 295 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLI 354

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           ++Y + G I+    +  S    R    + TW + +  ++         +IF  M   G  
Sbjct: 355 DMYAKCGDIDAAPQVSDSSAFNR---SLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIE 411

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           PD  T   L+SACS    ++    + R+M +D
Sbjct: 412 PDDITFVGLLSACSHSGMLDLGRNIFRSMRQD 443



 Score = 41.2 bits (95), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG- 138
           ++  ++  G       + ++M K+G++PD      +L+     G  +    +  +M +  
Sbjct: 385 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDY 444

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           +    +  Y  +I++ G  G  ++ E +  ++P   ++PD V W S L A
Sbjct: 445 NITPKLEHYGCMIDLLGHSGLFKEAEEMINTMP---MEPDGVIWCSLLKA 491



 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 84/209 (40%), Gaps = 16/209 (7%)

Query: 44  PNLFVFIF-------SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F F F       S  F +   +   + +LG    +  H  L++ Y++ G +   + V
Sbjct: 73  PNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKV 132

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++        D     +++  Y   G  E  +++   +       D+ ++N +I+ Y  
Sbjct: 133 FDRSSHR----DVVSYTALITGYASRGYIESAQKMFDEIP----IKDVVSWNAMISGYAE 184

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  +K   LF+ +    +KPD  T  + ++A ++        ++   + D G   +   
Sbjct: 185 TGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKI 244

Query: 217 AKVLISACSSEDQIEQVTTLVRTM-HKDM 244
              LI   S   ++E    L+  + +KD+
Sbjct: 245 VNALIDLYSKCGEVETACELLEGLSNKDV 273



 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 21/162 (12%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV-----------AKCEGVINQMHKS 103
           + +A  +F+EM R G TP   + + +L A +  G +            K +GV+   + S
Sbjct: 289 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVV-VTNAS 347

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
            L+       S++++Y + G  +   +V    +  ++   +ST+N +I  +   G     
Sbjct: 348 SLR------TSLIDMYAKCGDIDAAPQV---SDSSAFNRSLSTWNAMIFGFAMHGRANAA 398

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             +F  +    ++PD +T+   L+A S   +      IF  M
Sbjct: 399 FDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSM 440


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 84/189 (44%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y      V+EEM+R GI P + +  +L     K G+  K    + +M + G  PD    N
Sbjct: 238 YTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYN 297

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y R G+ +    +   M +     D+ +Y  L+N   + G + +   LF  +  +
Sbjct: 298 TLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHR 357

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD+VT+ + +  Y ++   +    +  +MI  G  PD  T  VL+     E +    
Sbjct: 358 GLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSA 417

Query: 234 TTLVRTMHK 242
             LV  + +
Sbjct: 418 LNLVVELQR 426



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 88/179 (49%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  M R+G  PT+ +   LL    K     +C  V  +M + G+ P+ +  N + ++  +
Sbjct: 211 FRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCK 270

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G   K+ + L  ME+  +  DI TYN LIN Y R G ++    L++ +  + + PD+V+
Sbjct: 271 DGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVS 330

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +T+ +    ++   R   ++F  M+  G  PD  T   LI     E ++++  +L+  M
Sbjct: 331 YTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDM 389



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 7/200 (3%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ AY + G V +      +M + G  P     N +LN   +L   ++  EV   ME+ 
Sbjct: 193 MLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERF 252

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
             A ++ T+NIL ++  + G   K+    + +  +   PD+VT+ + + +Y RK      
Sbjct: 253 GIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDA 312

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-RTMHKDMKTALPIYFNLY-- 255
             +++ M   G  PD  +   L++    E ++ +   L  R +H+ +   +  Y  L   
Sbjct: 313 FYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHG 372

Query: 256 ----GEKGVARSNLGQYIGN 271
               G+   +RS L   I N
Sbjct: 373 YCKEGKMQESRSLLHDMIWN 392



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 99/247 (40%), Gaps = 40/247 (16%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +F  M   G++P + ++  L+  Y K G + +   +++ M  +G+ PD+F    ++
Sbjct: 346 EAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLV 405

Query: 117 NLYGRLGQFEKM-----------------------------------EEVLTAMEKGSYA 141
             YG+ G+F                                      + +L  M K  + 
Sbjct: 406 EGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHK 465

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            ++  YN LI  + +   I +   L   +  K +KP++ T+ + +   SR         +
Sbjct: 466 PELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESL 525

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN----LYGE 257
             EM+ +G  PD    + L      E+ I++  +L+    K+ +      FN    +   
Sbjct: 526 VGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALIRITSA 585

Query: 258 KG-VARS 263
           KG +ARS
Sbjct: 586 KGDIARS 592



 Score = 37.4 bits (85), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 64/156 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E M + G  P ++ +  L+ ++ +   +A+   +  +M    +KP+     +++ 
Sbjct: 452 AKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIG 511

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              RL +  + E ++  M       D+     L   Y R   I+K E L      +    
Sbjct: 512 CLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIH 571

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D  ++ + +   S K    R LEI + M+  G  P+
Sbjct: 572 DTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPN 607


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 2/172 (1%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           +TP   S  +++  Y K+G VA    ++++M + G+K +    NS+L+ Y R    +++ 
Sbjct: 141 VTPLSAS--VVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVA 198

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           E+L  ME       + TY IL++       I K+E +F+ + +K L  DV  ++S + AY
Sbjct: 199 EMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAY 258

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            R    RR  E+F+E +  G  P+  T   LI+      Q+E    LV  M 
Sbjct: 259 CRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQ 310



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  GI PT+ ++ +L+   S   ++ K E V  +M    L  D +  +S++N Y R G 
Sbjct: 204 MENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGN 263

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +  EV           +  TY  LIN + + G +E  E L   +  + +  + + + +
Sbjct: 264 VRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNT 323

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +  Y RK +  + LEI   M   G   D  T   L       +++++   L+R M
Sbjct: 324 MIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIM 379



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            AVFEEMK   ++  +  +  ++ AY + GNV +   V ++   +G++P+     +++N 
Sbjct: 233 EAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALING 292

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           + ++GQ E  E ++T M+      +   +N +I+ Y R   ++K   +   +    ++ D
Sbjct: 293 FCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELD 352

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           V T+ +      R         +   MI+ G  P+  +   LIS   +E  + +   L R
Sbjct: 353 VYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFR 412

Query: 239 TM 240
            M
Sbjct: 413 EM 414



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+E    GI P   ++  L+  + K G +   E ++  M   G+  +  V N+M++
Sbjct: 267 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 326

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R    +K  E+   MEK     D+ TYN L     R   +++ + L + +  K ++P
Sbjct: 327 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 386

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V++T+ ++ +  +        +F EM   G  P   T  V++     +  I +     
Sbjct: 387 NHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK 446

Query: 238 RTMHK 242
             M K
Sbjct: 447 NEMEK 451



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 80/175 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +   M   G+ P   S+  L++ +   G++ +   +  +M  +G +P     N 
Sbjct: 369 MDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNV 428

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ Y + G   + E     MEK     DI +Y  L++ +   G ++    LF+ +  + 
Sbjct: 429 MMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRG 488

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
            KP++V +T+ ++  +++       ++++ M+  G  PD      L+ +  ++ +
Sbjct: 489 SKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKK 543



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 78/179 (43%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+++GI   + ++  L     +   + + + ++  M + G++P+     ++++++   G 
Sbjct: 344 MEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGD 403

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   +   M        + TYN++++ Y + G I + E     +  K L PD+ ++ +
Sbjct: 404 MVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAA 463

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +  +         L +FEEM   G  P+      LIS  + E + E+   L   M  D
Sbjct: 464 LVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGD 522



 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 58  AHA--VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           AHA  + +EM R G+      +  LL AY++  +  +   ++  M   G++P       +
Sbjct: 160 AHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTIL 219

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++         K+E V   M+  + + D+  Y+ +IN Y R G + +   +F       +
Sbjct: 220 VDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGI 279

Query: 176 KPDVVTWTSRLAAYSR 191
           +P+  T+ + +  + +
Sbjct: 280 EPNEHTYGALINGFCK 295


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 84/184 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A FE++K  G  P + ++  LL  + K GN  +   V+ +M +SG KPD    N + 
Sbjct: 276 EAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELA 335

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y R G +E+  + L  M       +  TYN ++  YG  G +++   LF  +      
Sbjct: 336 GSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFI 395

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P V T+   L    +K  +   LE+  EM  +GC P+  T   +++ C        VT +
Sbjct: 396 PYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRV 455

Query: 237 VRTM 240
           +  M
Sbjct: 456 LERM 459



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 35/221 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----------- 103
           ++ A ++  +MK  G  P   S+ LLL  ++K GN A  E +  ++++            
Sbjct: 519 WTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRT 578

Query: 104 ------------------------GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                                   G KPD  + NSML++Y + G + K  E+  ++++G 
Sbjct: 579 LVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGG 638

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + D+ TYN ++++Y +     + E + + L   +LKPDVV++ + +  + ++ L +   
Sbjct: 639 LSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQ 698

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            I  EMI  G  P   T   L+   +S +   +   +V  M
Sbjct: 699 RILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYM 739



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 91/190 (47%), Gaps = 1/190 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           +  A  +F E+KR G+ PT   + ++L  Y + G +  +   ++ +M  +G++PD F  +
Sbjct: 203 YERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEMRAAGVEPDGFTAS 262

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++   GR G  ++       ++   +   + TYN L+ ++G+ G   +   + + +   
Sbjct: 263 TVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEES 322

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KPD VT+     +Y+R   Y    +  + M+  G  P+  T   +++A  +  ++++ 
Sbjct: 323 GCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEA 382

Query: 234 TTLVRTMHKD 243
             L   M K+
Sbjct: 383 LALFDWMKKN 392



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 8/162 (4%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +++EM   G TP + ++  LL+  S+ G+    + +IN+M   G KP+    + +
Sbjct: 485 ANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLL 544

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF----IEKMEGLFQSLP 171
           L  + + G    +E    A+EK  Y   +    +++       F    +E +E  FQ + 
Sbjct: 545 LQCHAKGGNAAGIE----AIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVM 600

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           A+  KPD+V + S L+ Y++  +YR+  E+F+ +   G  PD
Sbjct: 601 ARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPD 642



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 77/152 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F+E+   G  P +     +L+ Y+K G   K   + + + + GL PD    NSM+++Y 
Sbjct: 595 AFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYA 654

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  +  + E++L  ++      D+ +YN ++N + + G I++ + +   + A  ++P VV
Sbjct: 655 KSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVV 714

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           T+ + +  Y+ ++++    E+   MI     P
Sbjct: 715 TYHTLVGGYASREMFSEAREVVSYMIQRNLSP 746



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L A S  G   +   +  ++ + G+ P   + N ML++YGR+G+ + ++  +L
Sbjct: 187 VRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAML 246

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +I   GR G +++    F+ L ++   P VVT+ + L  + + 
Sbjct: 247 EEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKA 306

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             Y   L + +EM ++GC PD  T   L  + +     E+    + TM
Sbjct: 307 GNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTM 354



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 80/178 (44%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  + +A  V +EM+  G  P   ++  L  +Y++ G   +    ++ M   G+
Sbjct: 300 LQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGI 359

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+ F  N+++  YG  G+ ++   +   M+K  +   ++TYN+++ + G+      M  
Sbjct: 360 LPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLE 419

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +   +      P+ VTW + LA   ++ +      + E M   G      T   LISA
Sbjct: 420 MLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISA 477



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 7/185 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +  I + Y       +A A+F+ MK+ G  P + ++ L+L    K         +
Sbjct: 361 PNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEM 420

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M +SG  P+    N+ML + G+ G    +  VL  M+         T+N LI+ YGR
Sbjct: 421 LGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGR 480

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       ++  + A    P + T+ + L+  SR+  +     I  +M + G  P+  +
Sbjct: 481 CGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMS 540

Query: 217 AKVLI 221
             +L+
Sbjct: 541 YSLLL 545



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 10/195 (5%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++ +A    + M   GI P   ++  ++TAY   G V +   + + M K+G  P     N
Sbjct: 343 FYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYN 402

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L + G+  +F  M E+L  M +     +  T+N ++ + G+ G    MEG + +   +
Sbjct: 403 LILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRG----MEG-YVTRVLE 457

Query: 174 RLKPDVV-----TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
           R+K   V     T+ + ++AY R        ++++EM  AG  P   T   L+S  S + 
Sbjct: 458 RMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQG 517

Query: 229 QIEQVTTLVRTMHKD 243
                 +++  M  +
Sbjct: 518 DWTAAQSIINKMKNE 532



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 79/161 (49%), Gaps = 7/161 (4%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P+L +F  + S+Y     +  A  +F+ +K+ G++P + ++  ++  Y+K+    + E
Sbjct: 604 HKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAE 663

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ ++  S LKPD    N+++N + + G  ++ + +L+ M        + TY+ L+  Y
Sbjct: 664 KILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGY 723

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
                  +   +   +  + L P  +T+   + +Y + K +
Sbjct: 724 ASREMFSEAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRF 764



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 12/207 (5%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK--PDTFVINSMLNLYGR 121
           EM R G TP   +   +L    K G       V+ +M   G++   DTF  N++++ YGR
Sbjct: 423 EMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTF--NTLISAYGR 480

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G      ++   M    +   ++TYN L+++  R G     + +   +  +  KP+ ++
Sbjct: 481 CGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMS 540

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQIEQVTTLVR 238
           ++  L  +++         I +E+ +   +P     + L+ +   C   + IE+    V 
Sbjct: 541 YSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEV- 599

Query: 239 TMHKDMKTALPIY---FNLYGEKGVAR 262
            M +  K  L I+    ++Y + G+ R
Sbjct: 600 -MARGHKPDLVIFNSMLSMYAKNGMYR 625


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN+F +   I        + +A A+  EM  L I P + +  LL+  + K GNV +  G
Sbjct: 77  SPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARG 136

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V+  M + G++P+    +S++N Y    +  +  ++   M       D+ +YNILIN Y 
Sbjct: 137 VLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYC 196

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   I + + LF  +  + L PD+V++ + +    +    R   ++F+ M+  G  PD  
Sbjct: 197 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLC 256

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
           T  +L+     +  + +   L R M 
Sbjct: 257 TYSILLDGFCKQGYLAKAFRLFRAMQ 282



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 90/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F++M   G  P + ++  ++ +  K   V +   + + M   G+ P+ F  NS++ 
Sbjct: 29  AAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQ 88

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 ++ +   +L  M   +   +I T+++LINI+ + G + +  G+ +++    ++P
Sbjct: 89  GLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEP 148

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVT++S +  YS +       ++F+ MI  GC PD  +  +LI+      +I +   L 
Sbjct: 149 NVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLF 208

Query: 238 RTM 240
             M
Sbjct: 209 NEM 211



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 81/157 (51%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ M   G  P + S+ +L+  Y K   + + + + N+M   GL PD    N+++
Sbjct: 168 EARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLI 227

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +LG+  +  ++   M       D+ TY+IL++ + + G++ K   LF+++ +  LK
Sbjct: 228 DGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLK 287

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           P++V +   + A  + +  +   ++F E+   G  P+
Sbjct: 288 PNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 324



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 8/207 (3%)

Query: 33  MLINFLLLQHTPNLFVF--IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           ML   + L   PN+  F  + +I+  +     A  V + M  +G+ P + ++  L+  YS
Sbjct: 102 MLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYS 161

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
               V +   + + M   G KPD F  N ++N Y +  +  + +++   M       DI 
Sbjct: 162 LQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIV 221

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +YN LI+   + G + +   LF+++      PD+ T++  L  + ++    +   +F  M
Sbjct: 222 SYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAM 281

Query: 206 IDAGCYPDGGTAKVLISA-CSSEDQIE 231
                 P+     +LI A C S +  E
Sbjct: 282 QSTYLKPNMVMYNILIDAMCKSRNLKE 308



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 59/126 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM   G+TP + S+  L+    + G + +   +   M  +G  PD    + +L
Sbjct: 203 EAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILL 262

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G   K   +  AM+      ++  YNILI+   +   +++   LF  L  + L+
Sbjct: 263 DGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQ 322

Query: 177 PDVVTW 182
           P++  W
Sbjct: 323 PNMKHW 328



 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/141 (19%), Positives = 61/141 (43%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G +PD     +++N   ++G+      +   M +     D+ TY+ +I+   +   
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           + +   +F  + AK + P++ T+ S +        +R    +  EM+     P+  T  +
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI+    E  + +   +++TM
Sbjct: 121 LINIFCKEGNVFEARGVLKTM 141


>gi|357138098|ref|XP_003570635.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Brachypodium distachyon]
          Length = 519

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 1/168 (0%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            + A   F++MK +    P + ++ +LL A ++  +  + E +   + +S + PD +  N
Sbjct: 167 LAKALGYFDKMKTIERCQPNIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYN 226

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ YG+ G  ++ME VL  M+      D+ T+NILI+ YGR    +KME +F+SL   
Sbjct: 227 GVIDGYGKNGMIKEMESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRS 286

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + +P   T+ S +  Y + +L  +   + E+M + G  P   T + LI
Sbjct: 287 KERPTHPTFNSMITNYGKARLKEKAESVLEKMDELGFKPSYVTQECLI 334



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 56  SDAHAV---FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           SDA  V   F+++    +TP + ++  ++  Y K G + + E V+ +M     +PD    
Sbjct: 201 SDAKQVEILFKDLDESLVTPDIYTYNGVIDGYGKNGMIKEMESVLVRMKSKQCRPDVITF 260

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +++ YGR   F+KME+V  ++ +        T+N +I  YG+    EK E + + +  
Sbjct: 261 NILIDSYGRKQIFDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLKEKAESVLEKMDE 320

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
              KP  VT    +  Y+      +  +IF+E++++
Sbjct: 321 LGFKPSYVTQECLIMMYAYCDCVSKAQQIFDELVNS 356



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 24/198 (12%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML--NLYGR---------LGQFEKM 128
           L++   K G +     + +QM  SG KPDT V NS++  +L+ R         LG F+KM
Sbjct: 118 LISVMGKKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALAKALGYFDKM 177

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           + +           +I TYNIL+    R    +++E LF+ L    + PD+ T+   +  
Sbjct: 178 KTIERCQ------PNIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYNGVIDG 231

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQV-TTLVRTMHKDM 244
           Y +  + +    +   M    C PD  T  +LI +   +   D++EQV  +L+R+  +  
Sbjct: 232 YGKNGMIKEMESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPT 291

Query: 245 KTALPIYFNLYGEKGVAR 262
               P + ++    G AR
Sbjct: 292 H---PTFNSMITNYGKAR 306



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 77/186 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  +V   MK     P + +  +L+ +Y +     K E V   + +S  +P     NSM+
Sbjct: 240 EMESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPTHPTFNSMI 299

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG+    EK E VL  M++  +     T   LI +Y     + K + +F  L   +  
Sbjct: 300 TNYGKARLKEKAESVLEKMDELGFKPSYVTQECLIMMYAYCDCVSKAQQIFDELVNSQST 359

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             + +  + L AY   +L      + +  I+ G  P   T K+L  A +  +    V  L
Sbjct: 360 VPLSSLNAMLDAYCMNRLPMEADRLLDAAIEKGVVPGASTYKLLYKAYTRANDKVLVQKL 419

Query: 237 VRTMHK 242
           +  M+K
Sbjct: 420 LGRMNK 425



 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 10/153 (6%)

Query: 120 GRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           GR   + +  E+   M+K   Y AD   Y+ LI++ G+ G I     LF  +     KPD
Sbjct: 87  GRHDGWVQCLEIFRWMQKQRWYVADNGIYSKLISVMGKKGQIRMAMWLFSQMRNSGCKPD 146

Query: 179 VVTWTSRLAAY----SRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQV 233
              + S + A+     + K   + L  F++M     C P+  T  +L+ AC+     +QV
Sbjct: 147 TSVYNSLIGAHLHSRDKSKALAKALGYFDKMKTIERCQPNIVTYNILLRACARASDAKQV 206

Query: 234 TTLVRTMHKDMKTALPIYFN----LYGEKGVAR 262
             L + + + + T     +N     YG+ G+ +
Sbjct: 207 EILFKDLDESLVTPDIYTYNGVIDGYGKNGMIK 239



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 54/137 (39%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     VF+ + R    PT  +   ++T Y K     K E V+ +M + G KP       
Sbjct: 273 FDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLKEKAESVLEKMDELGFKPSYVTQEC 332

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +Y       K +++   +        +S+ N +++ Y       + + L  +   K 
Sbjct: 333 LIMMYAYCDCVSKAQQIFDELVNSQSTVPLSSLNAMLDAYCMNRLPMEADRLLDAAIEKG 392

Query: 175 LKPDVVTWTSRLAAYSR 191
           + P   T+     AY+R
Sbjct: 393 VVPGASTYKLLYKAYTR 409



 Score = 38.9 bits (89), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY----GRGGFIEKM 163
           D  + + ++++ G+ GQ      + + M       D S YN LI  +     +   + K 
Sbjct: 111 DNGIYSKLISVMGKKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALAKA 170

Query: 164 EGLFQSLPA-KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            G F  +   +R +P++VT+   L A +R    ++   +F+++ ++   PD  T   +I 
Sbjct: 171 LGYFDKMKTIERCQPNIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYNGVID 230

Query: 223 ACSSEDQIEQV-TTLVRTMHKDMKTALPIYFNL----YGEKGV 260
                  I+++ + LVR   K  +  + I FN+    YG K +
Sbjct: 231 GYGKNGMIKEMESVLVRMKSKQCRPDV-ITFNILIDSYGRKQI 272


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 95/199 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   H V  +M   G TP ++ +  ++    K G++     ++N+M   GLKP+    N+
Sbjct: 278 FERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNT 337

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L       ++E+ EE+L  M       D  T+NIL++ + + G ++++  L + +  + 
Sbjct: 338 LLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERG 397

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV+T+T+ +  + ++ L    + + + M   GC P+  +  +++    S ++     
Sbjct: 398 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAE 457

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M +      PI FN
Sbjct: 458 DLMSQMIQQGCPLNPITFN 476



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA AV +EM R G  P    + ++L A  + G       V+  +H  G   D    N 
Sbjct: 138 IADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNL 197

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN     G  ++   +L  +       D+ +YN ++    +G  + K  G  Q L  + 
Sbjct: 198 VLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVL----KGLCMAKRWGCVQELMEEM 253

Query: 175 LK----PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           ++    P++VT+ + ++   R  L+ R  E+  +M++ GC PD      +I     E  +
Sbjct: 254 VRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHL 313

Query: 231 EQVTTLVRTM 240
           E    ++  M
Sbjct: 314 EVAHEILNRM 323



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 79/186 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  ++   G  P + S+  +L            + ++ +M +    P+    N+
Sbjct: 208 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R G FE++ EVL  M +     DI  Y  +I+   + G +E    +   +P+  
Sbjct: 268 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 327

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKP+VV + + L      + +    E+  EM D  C  D  T  +L+        +++V 
Sbjct: 328 LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVI 387

Query: 235 TLVRTM 240
            L+  M
Sbjct: 388 ELLEQM 393



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 4/183 (2%)

Query: 62  FEEMKRLG----ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            E  +RL     + P   ++  ++ A    G +A    V+++M + G  P   + + +L 
Sbjct: 106 LESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILE 165

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G F     VL  +     A D+   N+++N     G +++   L + LP+   +P
Sbjct: 166 AACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEP 225

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV++ + L      K +    E+ EEM+   C P+  T   LIS        E+V  ++
Sbjct: 226 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 285

Query: 238 RTM 240
             M
Sbjct: 286 AQM 288



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 86/183 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +  +M + G      +   L+    K G V +   ++ QM  +G  PD    ++
Sbjct: 453 WVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYST 512

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G+ G+ ++  E+L  M     + +   Y+ + +   R G I K+  +F ++    
Sbjct: 513 VIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTT 572

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ D V + + +++  ++    R +E    M+ +GC P+  T  +LI   +SE  +++  
Sbjct: 573 IRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQ 632

Query: 235 TLV 237
            ++
Sbjct: 633 EML 635



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/193 (18%), Positives = 84/193 (43%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M   G  P + ++  ++  + K G + +   ++  M   G KP+T     +L    
Sbjct: 389 LLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLC 448

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              ++   E++++ M +     +  T+N LIN   + G +E+   L + +      PD++
Sbjct: 449 SAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 508

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++++ +    +       LE+   M++ G  P+      + SA S E +I +V  +   +
Sbjct: 509 SYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNI 568

Query: 241 HKDMKTALPIYFN 253
                 +  + +N
Sbjct: 569 QDTTIRSDAVLYN 581



 Score = 44.7 bits (104), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/152 (18%), Positives = 67/152 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M   G +P + S+  ++    K G   +   ++N M   G+ P+T + +S+ +
Sbjct: 491 AIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIAS 550

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G+  K+ ++   ++  +  +D   YN +I+   + G  E+       + +    P
Sbjct: 551 ALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVP 610

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +  T+T  +   + +   +   E+  E+   G
Sbjct: 611 NESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 55/118 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +   M   G++P    +  + +A S+ G + K   + + +  + ++ D  + N++
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 583

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++   + G+ E+  E L  M       + STY ILI      GF+++ + +   L +K
Sbjct: 584 ISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSK 641


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 94/199 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   H V  +M   G TP ++ +  ++    K G++     ++N+M   GLKP+    N+
Sbjct: 278 FERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNT 337

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L       ++E+ EE+L  M       D  T+NIL++ + + G ++++  L + +    
Sbjct: 338 LLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHG 397

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV+T+T+ +  + ++ L    + + + M   GC P+  +  +++    S ++     
Sbjct: 398 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAE 457

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M +      PI FN
Sbjct: 458 DLMSQMIQQGCPLNPITFN 476



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 8/163 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA AV +EM R G  P    + ++L A  + G       V+  +H  G   D    N 
Sbjct: 138 IADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNL 197

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN     G  +K   +L  +       D+ +YN ++    +G  + K  G  Q L  + 
Sbjct: 198 VLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVL----KGLCMAKRWGCVQELMEEM 253

Query: 175 LK----PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           ++    P++VT+ + ++   R  L+ R  E+  +M + GC PD
Sbjct: 254 VRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPD 296



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 4/185 (2%)

Query: 62  FEEMKRLG----ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            E  +RL     + P   ++  ++ A    G +A    V+++M + G  P   + + +L 
Sbjct: 106 LESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILE 165

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G F     VL  +     A D+   N+++N     G ++K   L + LP+   +P
Sbjct: 166 AACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEP 225

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV++ + L      K +    E+ EEM+   C P+  T   LIS        E+V  ++
Sbjct: 226 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 285

Query: 238 RTMHK 242
             M +
Sbjct: 286 AQMAE 290



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 77/180 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  ++   G  P + S+  +L            + ++ +M +    P+    N++++   
Sbjct: 214 LLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLC 273

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G FE++ EVL  M +     DI  Y  +I+   + G ++    +   +P+  LKP+VV
Sbjct: 274 RNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVV 333

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + L      + +    E+  EM D  C  D  T  +L+        +++V  L+  M
Sbjct: 334 CYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 393



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 86/183 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +  +M + G      +   L+    K G V +   ++ QM  +G  PD    ++
Sbjct: 453 WVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYST 512

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G+ G+ ++  E+L  M     + +   Y+ + +   R G I K+  +F ++    
Sbjct: 513 VIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTT 572

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ D V + + +++  ++    R +E    M+ +GC P+  T  +LI   +SE  +++  
Sbjct: 573 IRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQ 632

Query: 235 TLV 237
            ++
Sbjct: 633 EML 635



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/193 (18%), Positives = 84/193 (43%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M   G  P + ++  ++  + K G + +   ++  M   G KP+T     +L    
Sbjct: 389 LLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLC 448

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              ++   E++++ M +     +  T+N LIN   + G +E+   L + +      PD++
Sbjct: 449 SAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 508

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++++ +    +       LE+   M++ G  P+      + SA S E +I +V  +   +
Sbjct: 509 SYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNI 568

Query: 241 HKDMKTALPIYFN 253
                 +  + +N
Sbjct: 569 QDTTIRSDAVLYN 581



 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/152 (18%), Positives = 67/152 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M   G +P + S+  ++    K G   +   ++N M   G+ P+T + +S+ +
Sbjct: 491 AIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIAS 550

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G+  K+ ++   ++  +  +D   YN +I+   + G  E+       + +    P
Sbjct: 551 ALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVP 610

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +  T+T  +   + +   +   E+  E+   G
Sbjct: 611 NESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 55/118 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +   M   G++P    +  + +A S+ G + K   + + +  + ++ D  + N++
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 583

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++   + G+ E+  E L  M       + STY ILI      GF+++ + +   L +K
Sbjct: 584 ISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSK 641


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 2/172 (1%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           +TP   S  +++  Y K+G VA    ++++M + G+K +    NS+L+ Y R    +++ 
Sbjct: 141 VTPLSAS--VVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVA 198

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           E+L  ME       + TY IL++       I K+E +F+ + +K L  DV  ++S + AY
Sbjct: 199 EMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAY 258

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            R    RR  E+F+E +  G  P+  T   LI+      Q+E    LV  M 
Sbjct: 259 CRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQ 310



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  GI PT+ ++ +L+   S   ++ K E V  +M    L  D +  +S++N Y R G 
Sbjct: 204 MENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGN 263

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +  EV           +  TY  LIN + + G +E  E L   +  + +  + + + +
Sbjct: 264 VRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNT 323

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +  Y RK +  + LEI   M   G   D  T   L       +++++   L+R M
Sbjct: 324 MIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIM 379



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+E    GI P   ++  L+  + K G +   E ++  M   G+  +  V N+M++
Sbjct: 267 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 326

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R    +K  E+   MEK     D+ TYN L     R   +++ + L + +  K ++P
Sbjct: 327 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 386

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V++T+ ++ +  +        +F EM   G  P   T  V++     +  I +     
Sbjct: 387 NHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK 446

Query: 238 RTMHK 242
           + M K
Sbjct: 447 KEMEK 451



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            AVFEEMK   ++  +  +  ++ AY + GNV +   V ++   +G++P+     +++N 
Sbjct: 233 EAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALING 292

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           + ++GQ E  E ++T M+      +   +N +I+ Y R   ++K   +   +    ++ D
Sbjct: 293 FCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELD 352

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           V T+ +      R         +   MI+ G  P+  +   LIS   +E  + +   L R
Sbjct: 353 VYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFR 412

Query: 239 TM 240
            M
Sbjct: 413 EM 414



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 80/175 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +   M   G+ P   S+  L++ +   G++ +   +  +M  +G +P     N 
Sbjct: 369 MDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNV 428

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ Y + G   + E     MEK     DI +Y  L++ +   G ++    LF+ +  + 
Sbjct: 429 MMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRG 488

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
            KP++V +T+ ++  +++       ++++ M+  G  PD      L+ +  ++ +
Sbjct: 489 SKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKK 543



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 79/179 (44%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+++GI   + ++  L     +   + + + ++  M + G++P+     ++++++   G 
Sbjct: 344 MEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGD 403

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   +   M        + TYN++++ Y + G I + E   + +  K L PD+ ++ +
Sbjct: 404 MVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAA 463

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +  +         L +FEEM   G  P+      LIS  + E + E+   L   M  D
Sbjct: 464 LVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGD 522



 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 58  AHA--VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           AHA  + +EM R G+      +  LL AY++  +  +   ++  M   G++P       +
Sbjct: 160 AHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTIL 219

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++         K+E V   M+  + + D+  Y+ +IN Y R G + +   +F       +
Sbjct: 220 VDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGI 279

Query: 176 KPDVVTWTSRLAAYSR 191
           +P+  T+ + +  + +
Sbjct: 280 EPNEHTYGALINGFCK 295


>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 703

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 107/217 (49%), Gaps = 10/217 (4%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H+    +  +S+  +   A+A FE M+R GI P+++++  LL A+ + G+      +   
Sbjct: 473 HSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKL 532

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  ++      N++++ + + G +++  +V++          + TYN+L+N Y RGG 
Sbjct: 533 MRREKVEGTRVTFNTLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGR 592

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             K+  L + + A  LKPD VT+++ + A+ R + + +     +EM+ +G   D  + + 
Sbjct: 593 HSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVMDVDSYQK 652

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYG 256
           L +   ++  I+          KD ++ + +  N  G
Sbjct: 653 LRAVLDAKAAIKN--------RKDRRSMIGVVRNKMG 681



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F +MK+ GI PT  S+  L+ AYS +G   K       M + G+KP      ++L+
Sbjct: 456 AADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLD 515

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G  + + ++   M +        T+N L++ + + G+ ++   +        L P
Sbjct: 516 AFRRAGDTQTLMKIWKLMRREKVEGTRVTFNTLVDGFAKHGYYKEARDVISKFANVGLHP 575

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            V+T+   + AY+R   + +  E+ EEM      PD  T   +I A
Sbjct: 576 TVMTYNMLMNAYARGGRHSKLPELLEEMAAHNLKPDSVTYSTMIYA 621



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 1/199 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +  E+++ G++     +  L+ AY K+  V + EG+  +M   G+KP     N +
Sbjct: 348 SEALIILSELEKKGVSSNTIVYNTLMDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNIL 407

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKR 174
           +  Y R  Q E +E+++  M++     +  +Y  +I+ YG+   +  M    F  +    
Sbjct: 408 MYAYSRKMQPEIVEKLMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDG 467

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP   ++T+ + AYS    + +    FE M   G  P   T   L+ A       + + 
Sbjct: 468 IKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLM 527

Query: 235 TLVRTMHKDMKTALPIYFN 253
            + + M ++      + FN
Sbjct: 528 KIWKLMRREKVEGTRVTFN 546



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 1/176 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKP 107
            + S  + DA  V+E M+   + P   +  +++    K G+ AK       +M+  G+K 
Sbjct: 270 LLSSARYEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKW 329

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
              V+ +++  +   G   +   +L+ +EK   +++   YN L++ Y +   +E+ EGLF
Sbjct: 330 GEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNTIVYNTLMDAYCKSNRVEEAEGLF 389

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             +  K +KP   T+   + AYSRK       ++  EM + G  P+  +   +ISA
Sbjct: 390 VEMKTKGIKPTEATFNILMYAYSRKMQPEIVEKLMAEMQETGLKPNAKSYTCIISA 445



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 86/178 (48%), Gaps = 1/178 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EM+  G+ P  KS+  +++AY K  N++        +M K G+KP +    ++++ Y   
Sbjct: 426 EMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVS 485

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  EK       M++      I TY  L++ + R G  + +  +++ +  ++++   VT+
Sbjct: 486 GWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTRVTF 545

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + +  +++   Y+   ++  +  + G +P   T  +L++A +   +  ++  L+  M
Sbjct: 546 NTLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEM 603


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 2/172 (1%)

Query: 55  FSDAHAVFEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +  A  +F+ M  KR    P + +   ++  YS  G +  C  V + M   GLKP+    
Sbjct: 291 YEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSY 350

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N+++  Y   G  ++   V  A++      D+ +Y  L+N YGR    +K   +F+ +  
Sbjct: 351 NTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKR 410

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            +LKP++V++ + + AY    L    +E+  EM   G YP+  +   L++AC
Sbjct: 411 DKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAAC 462



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 27/212 (12%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFE MKR  + P + S+  ++ AY   G +A+   V+ +M + G+ P+   I ++L 
Sbjct: 401 AREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLA 460

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR  +   ++ VL A E+     +   YN  I  Y   G  EK   +++S+   ++ P
Sbjct: 461 ACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIP 520

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID---------------------------AGC 210
           D VT+T  ++   +   Y   LE   EM+D                           AGC
Sbjct: 521 DAVTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSSGKITEAESMFNKMKMAGC 580

Query: 211 YPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            PD  T  +++ A ++ +  ++   L++ M +
Sbjct: 581 SPDVVTYTMMLHAYNAAEHWKKACALLQEMEE 612



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VF  +K  G+ P + S+  LL +Y ++    K   V   M +  LKP+    N+M+
Sbjct: 365 EALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMI 424

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YG  G   +  EVL  ME+     +  +   L+   GR      ++ + Q+   + +K
Sbjct: 425 DAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIK 484

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            + + + S + +Y     + +   ++  M  +   PD  T  VLIS C
Sbjct: 485 LNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGC 532



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++     +  G+  +M K   KPD    N+++N +GR GQ+     ++  M + 
Sbjct: 140 MMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHGRSGQWRWAMNIMEDMLQK 199

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     STYN LIN  G  G   +   L + +    + PD+VT    L+AY     Y + 
Sbjct: 200 AIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKA 259

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           L  FE M      PD  T  ++I   +   Q E+   + ++M +      P
Sbjct: 260 LSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHP 310



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 2/189 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +F EM++    P  ++   L+ A+ ++G       ++  M +  + P     N
Sbjct: 150 WTDQARGLFFEMQKWRCKPDAETCNALINAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYN 209

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N  G  G + +  ++   M +     D+ T+NI+++ Y  G    K    F+ +   
Sbjct: 210 NLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKGT 269

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIE 231
            ++PD  T    +   ++   Y + + IF+ M +  A C+PD  T   +I   S   QIE
Sbjct: 270 NIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIE 329

Query: 232 QVTTLVRTM 240
               +  TM
Sbjct: 330 NCRAVFSTM 338



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 82/196 (41%), Gaps = 35/196 (17%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A ++F +MK  G +P + ++ ++L AY+   +  K   ++ +M +  ++PDT   ++
Sbjct: 565 ITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSA 624

Query: 115 MLNLYGR---------LGQFEKMEEV--------------------------LTAMEKGS 139
           ++  + +         L +F + +E+                          +  ME   
Sbjct: 625 LMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLMESSF 684

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
               I   N L+++ G+ G IE M  LF  +     + +  T++  L        +R+ +
Sbjct: 685 SVVSIGLLNQLLHLLGKSGKIESMMKLFYKIIGSGAEINCNTYSILLKNLLAVGNWRKYI 744

Query: 200 EIFEEMIDAGCYPDGG 215
           E+ E M +A   P  G
Sbjct: 745 EVLEWMEEARVQPSNG 760



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 1/123 (0%)

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
           AYS +G + + E + N+M  +G  PD      ML+ Y     ++K   +L  ME+ +   
Sbjct: 559 AYS-SGKITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQP 617

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D    + L+  + +GG   K+  L + +  K +      +   ++A S  + +R  +E+ 
Sbjct: 618 DTIACSALMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELI 677

Query: 203 EEM 205
           + M
Sbjct: 678 KLM 680


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 87/162 (53%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F++M   G  PT+ ++ +++    K G++    G+  +M   GL PDT   NSM++ YG+
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G+ +        M+  S   D+ TYN LIN + + G + K    F+ +    LKP+VV+
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVS 240

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +++ + A+ ++ + ++ L+ + +M   G  P+  T   L+ A
Sbjct: 241 YSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDA 282



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 86/195 (44%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           V I    F +A   F +MKR  + P  +S   LL  +++ G     +     M  +G KP
Sbjct: 72  VLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKP 131

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
             F  N M++   + G  E    +   M+      D  TYN +I+ YG+ G ++     F
Sbjct: 132 TVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFF 191

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + + +   +PDV+T+ + +  + +     + LE F EM  +G  P+  +   L+ A   E
Sbjct: 192 EEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKE 251

Query: 228 DQIEQVTTLVRTMHK 242
           D ++Q       M +
Sbjct: 252 DMMQQALKFYVDMRR 266



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 91/201 (45%), Gaps = 7/201 (3%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           ++YF      FEEMK +   P + ++  L+  + K G + K      +M +SGLKP+   
Sbjct: 187 TVYF------FEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVS 240

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            +++++ + +    ++  +    M +     +  TY  L++ Y + G +     L   + 
Sbjct: 241 YSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMS 300

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              ++ +VVT+T+ +      +  +   E+F +M+ AG  P+  +   LI        ++
Sbjct: 301 QVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMD 360

Query: 232 QVTTLVRTMH-KDMKTALPIY 251
           +   L+  M  + +K  L +Y
Sbjct: 361 RALELLDEMKGRGIKPDLLLY 381



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M   G+ P + S+  L+  + K  N+ +   ++++M   G+KPD  +  + +
Sbjct: 326 EAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFI 385

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                L + E  + V+  M++    A+   Y  L++ Y +     +   L + +    ++
Sbjct: 386 WSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIE 445

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQVTT 235
              VT+   +    + KL  + ++ F  +  D G   +      +I     EDQ+E  TT
Sbjct: 446 VTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATT 505

Query: 236 LVRTM 240
           L   M
Sbjct: 506 LFEQM 510



 Score = 40.8 bits (94), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 38/203 (18%), Positives = 81/203 (39%), Gaps = 1/203 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  +  F+ +     A  + +EMK  GI P +  +   + +      +   + V+N
Sbjct: 343 LASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMN 402

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M + G+K +TF+  ++++ Y +     +   +L  M +        T+ +LI+   +  
Sbjct: 403 EMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNK 462

Query: 159 FIEKMEGLFQSLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
            + K    F  +     L+ +   +T+ +    ++        +FE+M   G  PD    
Sbjct: 463 LVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAY 522

Query: 218 KVLISACSSEDQIEQVTTLVRTM 240
             LI     +  + Q   L   M
Sbjct: 523 TSLIDGKLKQGNVVQALALRDKM 545


>gi|302817236|ref|XP_002990294.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
 gi|300141856|gb|EFJ08563.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
          Length = 1139

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 85/174 (48%)

Query: 48   VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            VF  S    DA  +F+++K  G  P  K +  ++  Y+K+G       +   M   GL+P
Sbjct: 905  VFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRP 964

Query: 108  DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                 N++++ Y R GQF K E++L  M K        T+ +LI+ Y   G   + E   
Sbjct: 965  HEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENAL 1024

Query: 168  QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            + +    ++P V  +   + A+SR +L R+ +E + +M  +G  PD  +++ +I
Sbjct: 1025 ERMQTAAIRPTVRHYNEVMLAFSRARLPRQAMESYLKMERSGIQPDVVSSRTMI 1078



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 8/216 (3%)

Query: 46  LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           ++  + SIY     + +A  +F+EM  L +   +K+  ++     K G   +   V+ ++
Sbjct: 484 VYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEEL 543

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL-TAMEKGSYAADISTYNILINIYGRGGF 159
              GL  D     ++L+ Y + G  E+  +   T +E G   AD+  YN ++++Y     
Sbjct: 544 LAKGLNLDDMAWKTLLHCYVKAGNVERATKTFKTLVESG--IADLMAYNDVLSLYAEFDM 601

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E  + LFQ L +  ++PD V + + +  Y    +     E+  +M + G  PD  T  +
Sbjct: 602 LEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGI 661

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
           LI+A    ++IE+   L+    K+ ++       +Y
Sbjct: 662 LINAYGEANRIEEAAGLLEASAKEDESEAAAISRIY 697



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 78/151 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  ++E++    +  +  ++ L++T Y K G   +   V   M  +G  PD+ + N 
Sbjct: 358 LADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNM 417

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++ G+LG++++  +V TAM++        +Y  +++I  +    E    +F  +  KR
Sbjct: 418 VLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQMKR 477

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
              D V +TS ++ Y +  LY    ++F+EM
Sbjct: 478 CPVDEVVYTSVISIYGKAGLYDEAEKLFQEM 508



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 69/152 (45%)

Query: 61   VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
             +  +  LG+ P+++++  +++ ++K+G     E +   +  +G +PD  V + M+N Y 
Sbjct: 883  TYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYA 942

Query: 121  RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            + G +E   ++  AM+         +YN LI+ Y R G   K E L   +      P  V
Sbjct: 943  KSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSV 1002

Query: 181  TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            T+   ++AY+ +          E M  A   P
Sbjct: 1003 TFLLLISAYAHRGKCNEAENALERMQTAAIRP 1034



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 78/162 (48%)

Query: 80   LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
            ++ A  + G + K     + +   GL+P     ++M++++ + G+    E++   ++   
Sbjct: 867  IIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAG 926

Query: 140  YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            +  D   Y+ ++N Y + G  E    LF+++  + L+P  V++ + + AY+R   + +  
Sbjct: 927  FQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAE 986

Query: 200  EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            ++  EM  AGC P   T  +LISA +   +  +    +  M 
Sbjct: 987  QLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQ 1028



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 5/192 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFV 111
             +A  + E+M+++G+        +LL AYSK G   K      + + +G   L+ D  V
Sbjct: 804 LEEAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGE-QKIFSFSGRWYPAGYCCLQHDHIV 862

Query: 112 I-NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N+++    R G+ +K  +  +++        + TY+ +I+++ + G     E +F+ L
Sbjct: 863 AYNTIIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDL 922

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            +   +PD   ++  +  Y++  +Y    ++FE M   G  P   +   LI A +   Q 
Sbjct: 923 KSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQF 982

Query: 231 EQVTTLVRTMHK 242
            +   L+  M K
Sbjct: 983 AKAEQLLVEMAK 994



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 53/119 (44%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            F+ A  +  EM + G  P+  + +LL++AY+  G   + E  + +M  + ++P     N 
Sbjct: 982  FAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYNE 1041

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  + R     +  E    ME+     D+ +   +I I   G   E+   L++   AK
Sbjct: 1042 VMLAFSRARLPRQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFEEGLSLYKKTEAK 1100



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 55/116 (47%)

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           SY   +  Y++L+ +YGR   I   E  FQ +  ++L PD V +++ +  Y+  +++   
Sbjct: 267 SYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEM 326

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           L ++E M+  G  P   T   ++   +  +++     L   + ++     P+ + L
Sbjct: 327 LTMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYAL 382


>gi|255551665|ref|XP_002516878.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543966|gb|EEF45492.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 714

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H+    +  +S+  +   A++ FE M+  GI P+++++  LL A+ ++G+      +   
Sbjct: 475 HSYTALIHAYSVSGWHEKAYSTFENMQTEGIKPSIETYTALLDAFRRSGDTQTLMRIWKM 534

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M    ++      N +L+ + + G + +  +V++   K      + TYN+L+N Y RGG 
Sbjct: 535 MMSEKVEGTRVTFNILLDGFAKQGHYVEARDVISEFGKLGLHPTVMTYNMLMNAYARGGQ 594

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             K+  L + +    LKPD +T+ + + AY R + +RR     + M+ +G  PD  + + 
Sbjct: 595 HSKLPQLLKEMATLNLKPDSITYLTMIYAYIRVRDFRRAFFYHKTMVKSGQVPDAKSYEK 654

Query: 220 LISACSSEDQIE 231
           L +   ++ +I+
Sbjct: 655 LRAILEAKSKIK 666



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 1/192 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM + G       +  L+ AY+K+  + + EG+  +M   GLKP +   N +++ Y R  
Sbjct: 358 EMAKKGAFSNAIVYNTLMDAYNKSNQIEEVEGIFAEMKAKGLKPTSATFNILMDAYSRRM 417

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKRLKPDVVTW 182
           Q E +EE+L  M+      D  +Y  LI+ YGR   +  M    F  +    +KP   ++
Sbjct: 418 QPEIVEELLLEMQDAGLQPDAKSYTCLISAYGRQNKMTDMAANAFLRMKKVGIKPTSHSY 477

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           T+ + AYS    + +    FE M   G  P   T   L+ A       + +  + + M  
Sbjct: 478 TALIHAYSVSGWHEKAYSTFENMQTEGIKPSIETYTALLDAFRRSGDTQTLMRIWKMMMS 537

Query: 243 DMKTALPIYFNL 254
           +      + FN+
Sbjct: 538 EKVEGTRVTFNI 549



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 7/180 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
           + DA  V+E M+   ++P   +  +++T   K G  AK       +M++ G+K    ++ 
Sbjct: 278 YDDACKVYEAMEAQNVSPDHVTCSIMITMMRKNGRSAKEAWEFFEKMNRKGVKWSPEILG 337

Query: 114 SMLNLYGRLGQFEKMEEVLTAME---KGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           +++  +   G   K E ++  +E   KG+++  I  YN L++ Y +   IE++EG+F  +
Sbjct: 338 ALVKSFCDEGL--KNEALIIQVEMAKKGAFSNAI-VYNTLMDAYNKSNQIEEVEGIFAEM 394

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            AK LKP   T+   + AYSR+       E+  EM DAG  PD  +   LISA   ++++
Sbjct: 395 KAKGLKPTSATFNILMDAYSRRMQPEIVEELLLEMQDAGLQPDAKSYTCLISAYGRQNKM 454



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 1/151 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   +F EMK  G+ PT  +  +L+ AYS+       E ++ +M  +GL+PD      ++
Sbjct: 386 EVEGIFAEMKAKGLKPTSATFNILMDAYSRRMQPEIVEELLLEMQDAGLQPDAKSYTCLI 445

Query: 117 NLYGRLGQFEKM-EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + YGR  +   M       M+K        +Y  LI+ Y   G+ EK    F+++  + +
Sbjct: 446 SAYGRQNKMTDMAANAFLRMKKVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENMQTEGI 505

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           KP + T+T+ L A+ R    +  + I++ M+
Sbjct: 506 KPSIETYTALLDAFRRSGDTQTLMRIWKMMM 536



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 83/178 (46%), Gaps = 1/178 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EM+  G+ P  KS+  L++AY +   +         +M K G+KP +    ++++ Y   
Sbjct: 428 EMQDAGLQPDAKSYTCLISAYGRQNKMTDMAANAFLRMKKVGIKPTSHSYTALIHAYSVS 487

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  EK       M+       I TY  L++ + R G  + +  +++ + +++++   VT+
Sbjct: 488 GWHEKAYSTFENMQTEGIKPSIETYTALLDAFRRSGDTQTLMRIWKMMMSEKVEGTRVTF 547

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              L  ++++  Y    ++  E    G +P   T  +L++A +   Q  ++  L++ M
Sbjct: 548 NILLDGFAKQGHYVEARDVISEFGKLGLHPTVMTYNMLMNAYARGGQHSKLPQLLKEM 605


>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 650

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 8/216 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  ++   G+      +  + +A  K   ++    +  +M K G  PD F  N ++
Sbjct: 425 EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILI 484

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +GR+G+ ++   +   +E+     DI +YN LIN  G+ G +++    F+ +  K L 
Sbjct: 485 SSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLN 544

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+++ +  + + +       +FEEM+  GC P+  T  +L+       +  +   L
Sbjct: 545 PDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDL 604

Query: 237 VRTMHKDMKTALPIYFNL--------YGEKGVARSN 264
              M +   T   I + +        +G+  + R N
Sbjct: 605 YTKMKQQGLTPDSITYTVLERLQSGSHGKSRIRRKN 640



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 93/187 (49%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + S+AH +F +M    +     S+M +L +    G   +   +++++H+ G+  DT + N
Sbjct: 387 HVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYN 446

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++ +  G+L Q   + ++   M+K   + DI TYNILI+ +GR G +++   +F+ L   
Sbjct: 447 TVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERS 506

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KPD++++ S +    +          F+EM + G  PD  T   L+      +++E  
Sbjct: 507 DCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMA 566

Query: 234 TTLVRTM 240
            +L   M
Sbjct: 567 YSLFEEM 573



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 84/166 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S  H +FE+MK+ G +P + ++ +L++++ + G V +   +  ++ +S  KPD    NS
Sbjct: 458 ISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNS 517

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N  G+ G  ++       M++     D+ TY+ L+  +G+   +E    LF+ +  K 
Sbjct: 518 LINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKG 577

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            +P++VT+   L    +       ++++ +M   G  PD  T  VL
Sbjct: 578 CQPNIVTYNILLDCLEKSGRTAEAVDLYTKMKQQGLTPDSITYTVL 623



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 94/196 (47%), Gaps = 3/196 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D       +K+ G+     ++  LL AY ++ + +K   V  ++ + G K D F  N +L
Sbjct: 186 DLQMCLRLVKKWGLKMNSFTYKCLLQAYLRSRDSSKAFDVYCEIRRGGHKLDIFAYNMLL 245

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +    L + EK  +V   M+K     D  +Y I+I   GR G  ++  GLF  +  + L 
Sbjct: 246 DA---LAKDEKACQVFEDMKKRHCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMITEGLT 302

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +VV + + +   ++ K+  + +++F  M++ GC P+  T  ++++   +E Q+ ++  +
Sbjct: 303 LNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEGQLVRLDGI 362

Query: 237 VRTMHKDMKTALPIYF 252
           V    + M   +  Y 
Sbjct: 363 VEISKRYMTQGIYSYL 378



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 69/163 (42%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   SK G+V++   +   M    +K +     SML      G+  +  E+L+ + +  
Sbjct: 378 LVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKG 437

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D   YN + +  G+   I  +  LF+ +      PD+ T+   ++++ R       +
Sbjct: 438 VVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAI 497

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            IFEE+  + C PD  +   LI+       +++     + M +
Sbjct: 498 NIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQE 540



 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 38/242 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +F EM   G+T  +  +  L+   +K   V K   V ++M ++G +P+ +  + 
Sbjct: 286 YDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSL 345

Query: 115 MLNLYGRLGQFEKMEEVLTA----MEKGSYAADISTY----------------------- 147
           +LNL    GQ  +++ ++      M +G Y+  + T                        
Sbjct: 346 VLNLLVAEGQLVRLDGIVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKG 405

Query: 148 ------NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
                 ++L ++ G G  IE +E +   +  K +  D + + +  +A  + K      ++
Sbjct: 406 ERDSYMSMLESLCGAGKTIEAIE-MLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDL 464

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIY---FNLYGE 257
           FE+M   G  PD  T  +LIS+     ++++   +   + + D K  +  Y    N  G+
Sbjct: 465 FEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGK 524

Query: 258 KG 259
            G
Sbjct: 525 NG 526



 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 108 DTFVINSMLNLYGRLG---QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           D F+ N ++ +  R     +F+++  +L +M K +   +IST NILI  +G     E ++
Sbjct: 132 DPFLYNRIILILSRSNLSDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGD---TEDLQ 188

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
              + +    LK +  T+   L AY R +   +  +++ E+   G   D     +L+ A 
Sbjct: 189 MCLRLVKKWGLKMNSFTYKCLLQAYLRSRDSSKAFDVYCEIRRGGHKLDIFAYNMLLDAL 248

Query: 225 SSEDQIEQVTTLVRTMH 241
           + +++  QV   ++  H
Sbjct: 249 AKDEKACQVFEDMKKRH 265


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 2/172 (1%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           +TP   S  +++  Y K+G VA    ++++M + G+K +    NS+L+ Y R    +++ 
Sbjct: 65  VTPLSAS--VVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVA 122

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           E+L  ME       + TY IL++       I K+E +F+ + +K L  DV  ++S + AY
Sbjct: 123 EMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAY 182

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            R    RR  E+F+E +  G  P+  T   LI+      Q+E    LV  M 
Sbjct: 183 CRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQ 234



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  GI PT+ ++ +L+   S   ++ K E V  +M    L  D +  +S++N Y R G 
Sbjct: 128 MENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGN 187

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +  EV           +  TY  LIN + + G +E  E L   +  + +  + + + +
Sbjct: 188 VRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNT 247

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +  Y RK +  + LEI   M   G   D  T   L       +++++   L+R M
Sbjct: 248 MIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIM 303



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 85/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +   AVFEEMK   ++  +  +  ++ AY + GNV +   V ++   +G++P+     +
Sbjct: 153 ITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGA 212

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + ++GQ E  E ++T M+      +   +N +I+ Y R   ++K   +   +    
Sbjct: 213 LINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMG 272

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ DV T+ +      R         +   MI+ G  P+  +   LIS   +E  + +  
Sbjct: 273 IELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEAR 332

Query: 235 TLVRTM 240
            L R M
Sbjct: 333 RLFREM 338



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+E    GI P   ++  L+  + K G +   E ++  M   G+  +  V N+M++
Sbjct: 191 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 250

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R    +K  E+   MEK     D+ TYN L     R   +++ + L + +  K ++P
Sbjct: 251 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 310

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V++T+ ++ +  +        +F EM   G  P   T  V++     +  I +     
Sbjct: 311 NHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK 370

Query: 238 RTMHK 242
             M K
Sbjct: 371 NEMEK 375



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 80/175 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +   M   G+ P   S+  L++ +   G++ +   +  +M  +G +P     N 
Sbjct: 293 MDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNV 352

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ Y + G   + E     MEK     DI +Y  L++ +   G ++    LF+ +  + 
Sbjct: 353 MMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRG 412

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
            KP++V +T+ ++  +++       ++++ M+  G  PD      L+ +  ++ +
Sbjct: 413 SKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKK 467



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 78/179 (43%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+++GI   + ++  L     +   + + + ++  M + G++P+     ++++++   G 
Sbjct: 268 MEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGD 327

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   +   M        + TYN++++ Y + G I + E     +  K L PD+ ++ +
Sbjct: 328 MVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAA 387

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +  +         L +FEEM   G  P+      LIS  + E + E+   L   M  D
Sbjct: 388 LVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGD 446



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 58  AHA--VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           AHA  + +EM R G+      +  LL AY++  +  +   ++  M   G++P       +
Sbjct: 84  AHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTIL 143

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++         K+E V   M+  + + D+  Y+ +IN Y R G + +   +F       +
Sbjct: 144 VDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGI 203

Query: 176 KPDVVTWTSRLAAYSR 191
           +P+  T+ + +  + +
Sbjct: 204 EPNEHTYGALINGFCK 219


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 2/175 (1%)

Query: 42  HTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +T N+ V  +  ++ F  A  V  EM++  + P + +H +L+ A  + G+V     +++ 
Sbjct: 158 YTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDS 217

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   GLKP     NS+L    +  +F+K +EV   M++ S A D+ ++NILI  + R G 
Sbjct: 218 MANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGE 277

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           +++    ++ +  + + PDVV+++  +  +SR+           EM   G  PDG
Sbjct: 278 VKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDG 332



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 2/192 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   EMK LG+ P    + +++  + + G++++   V ++M   G  PD    N++LN
Sbjct: 316 AGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLN 375

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +    E++L  ME+     D+ T+  LI+ Y R G  E    LF +L  +RL+P
Sbjct: 376 GLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRP 435

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+ S +    RK    +  E++++M      P+  T  +LI +   + Q+E     +
Sbjct: 436 DVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFL 495

Query: 238 RTMHKDMKTALP 249
             M K  K  LP
Sbjct: 496 DEMVK--KGNLP 505



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 4/207 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  EM+  G+TP + +   L+  Y + GN      + + + +  L+PD    NS++
Sbjct: 385 DAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLI 444

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G   K  E+   M       +  TY+ILI+ +   G +E   G    +  K   
Sbjct: 445 DGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNL 504

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++ T+ S +  Y R    ++  +  ++M     +PD  T   LI     E+ +     +
Sbjct: 505 PNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNV 564

Query: 237 VRTMHKDMKTALPIYFNL----YGEKG 259
              M K+M     + +N+    + E+G
Sbjct: 565 FNIMEKEMVRPDAVTYNMIINGFSEQG 591



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 89/198 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  V +EM   G  P + ++  LL    K   +   E ++N+M + G+ PD     ++
Sbjct: 349 SEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTL 408

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y R G FE   ++   + +     D+ TYN LI+   R G + K   L+  + A+ +
Sbjct: 409 IHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ +T++  + ++  K          +EM+  G  P+  T   +I        +++   
Sbjct: 469 LPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQ 528

Query: 236 LVRTMHKDMKTALPIYFN 253
            ++ M +D      I FN
Sbjct: 529 FLQKMRQDNVFPDLITFN 546



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 76/157 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA    +EM + G  P ++++  ++  Y ++GNV K +  + +M +  + PD    N+++
Sbjct: 490 DAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLI 549

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +         V   MEK     D  TYN++IN +   G ++    +F+ +    ++
Sbjct: 550 HGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIE 609

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           PD  T+ S +  +      ++  ++ +EMI  G  PD
Sbjct: 610 PDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 92/205 (44%), Gaps = 7/205 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP+L  F   I+       F +A  +F+ + R  + P + ++  L+    + G++AK   
Sbjct: 399 TPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANE 458

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + + MH   + P+    + +++ +   GQ E     L  M K     +I TYN +I  Y 
Sbjct: 459 LWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYC 518

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R G ++K +   Q +    + PD++T+ + +  Y +++       +F  M      PD  
Sbjct: 519 RSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAV 578

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T  ++I+  S +  ++    + + M
Sbjct: 579 TYNMIINGFSEQGNMQDAGRVFKGM 603



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A+ ++++M    I P   ++ +L+ ++ + G V    G +++M K G  P+    NS
Sbjct: 453 LAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNS 512

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R G  +K ++ L  M + +   D+ T+N LI+ Y +   +     +F  +  + 
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM 572

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++PD VT+   +  +S +   +    +F+ M D+G  PD  T   LI+ 
Sbjct: 573 VRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLING 621



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 8/216 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   ++EM+   +TP + S   L+  +S+ G +      + +M   GL PD  +   ++
Sbjct: 280 EAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVI 339

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R G   +   V   M       D+ TYN L+N   +   +   E L   +  + + 
Sbjct: 340 GGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVT 399

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+ T+T+ +  Y R+  +   L++F+ ++     PD  T   LI     +  + +   L
Sbjct: 400 PDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANEL 459

Query: 237 VRTMHKDMKTALP------IYFNLYGEKGVARSNLG 266
              MH   +  LP      I  + + EKG      G
Sbjct: 460 WDDMHA--REILPNHITYSILIDSHCEKGQVEDAFG 493



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 82/184 (44%), Gaps = 4/184 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           LL   S+ G     +     +  S  + + + +N M++ Y +  +F+  + V++ MEK  
Sbjct: 128 LLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRC 187

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+ T+N+LI+   R G ++    L  S+  + LKP +VT+ S L    + + + +  
Sbjct: 188 VFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAK 247

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN----LY 255
           E+F  M      PD  +  +LI       ++++     + M     T   + F+    L+
Sbjct: 248 EVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLF 307

Query: 256 GEKG 259
             +G
Sbjct: 308 SRRG 311


>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Glycine max]
          Length = 647

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 91/199 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH +F  M          + M +L +    G + +   ++N++H+ G+  DT + N++
Sbjct: 385 SEAHRLFCNMWNFHDKGDKDACMSMLESLCSAGKMTEAIDLLNKIHEKGITTDTIMYNTV 444

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
               GRL Q   + ++   M++     DI TYNILI+ +GR G ++     F+ L     
Sbjct: 445 FTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDC 504

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDV+++ S +    +          F+EM + G  PD  T   LI      D++E    
Sbjct: 505 KPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACR 564

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L   M  +  T   I +N+
Sbjct: 565 LFDEMLAEECTPNLITYNI 583



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 83/181 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +  ++   GIT     +  + TA  +   ++    +  +M + G  PD F  N +
Sbjct: 420 TEAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNIL 479

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ +GR G+ +   +    +E      D+ +YN LIN  G+ G +++    F+ +  K L
Sbjct: 480 ISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGL 539

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDVVT+++ +  + +         +F+EM+   C P+  T  +L+       +  +   
Sbjct: 540 NPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLDCLERSGRTAEAVD 599

Query: 236 L 236
           L
Sbjct: 600 L 600



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 79/166 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S  H ++E+MK+ G  P + ++ +L++++ + G V        ++  S  KPD    NS
Sbjct: 454 ISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNS 513

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N  G+ G  ++       M++     D+ TY+ LI  +G+   +E    LF  + A+ 
Sbjct: 514 LINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEE 573

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
             P+++T+   L    R       ++++ ++   G  PD  T  VL
Sbjct: 574 CTPNLITYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 619



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 87/175 (49%), Gaps = 5/175 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM--EEVLTAMEK 137
           LL AY +  + +    V   M + G + D F  N +L+    L + EK+   +V   M++
Sbjct: 203 LLQAYLRALDSSTAFRVYLDMIRHGYRLDIFGYNMLLDA---LAKDEKVCSYKVFEDMKR 259

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                D+ TY I+I + G+    ++   LFQ++ AK   P+++ + + + A ++ ++  +
Sbjct: 260 RHCEPDVFTYTIMIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEALAKGRMVDK 319

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
            + +F +M++    P+  T  V+++   +E ++ ++  +V    K +   +  YF
Sbjct: 320 AVLLFSKMVENDIQPNEFTYSVILNLLVAEGKLNKLDNIVDISKKYINKQIYAYF 374



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/158 (19%), Positives = 64/158 (40%)

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
           SK G+ ++   +   M     K D     SML      G+  +  ++L  + +     D 
Sbjct: 379 SKVGHASEAHRLFCNMWNFHDKGDKDACMSMLESLCSAGKMTEAIDLLNKIHEKGITTDT 438

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
             YN +    GR   I  +  L++ +      PD+ T+   ++++ R       ++ FEE
Sbjct: 439 IMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEE 498

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           + ++ C PD  +   LI+       +++     + M +
Sbjct: 499 LENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQE 536



 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 46/102 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +AH  F+EM+  G+ P + ++  L+  + KT  V     + ++M      P+    N +
Sbjct: 525 DEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNIL 584

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
           L+   R G+  +  ++   +++     D  TY +L  +   G
Sbjct: 585 LDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLERLQSGG 626


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+ F +   I       +   AH +F EM   G TP + ++ +++  ++K  N      
Sbjct: 466 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALK 525

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M  +G +PD    + ++ + G  G  E+ E V T M++ ++  D   Y +L++++G
Sbjct: 526 LYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWG 585

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +EK    +Q++    L+P+V T  S L+ + R        E+ + M+  G  P   
Sbjct: 586 KAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQ 645

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 646 TYTLLLSCCT 655



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + + +EM R G  P   ++  L+ +Y +   + +   V NQM ++G KPD     +
Sbjct: 380 FGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCT 439

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +   ++   M+ G  + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 440 LIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +  +++ + Y+  L+++ +M +AG  PD  T  +++        +E+  
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559

Query: 235 TLVRTM-HKDMKTALPIY---FNLYGEKG 259
            +   M  K+     P+Y    +L+G+ G
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAG 588



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 1/197 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y ++A  VF +M+  G  P   ++  L+  ++K G +     +  +M   GL PDTF  +
Sbjct: 414 YLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYS 473

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N  G+ G      ++   M       ++ TYNI+++++ +    +    L++ +   
Sbjct: 474 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNA 533

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PD VT++  +              +F EM      PD     +L+        +E+ 
Sbjct: 534 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593

Query: 234 TTLVRTM-HKDMKTALP 249
               + M H  ++  +P
Sbjct: 594 WQWYQAMLHAGLRPNVP 610



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/187 (18%), Positives = 87/187 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +++ M+  G++P   ++ +++    K G++     +  +M   G  P+    N
Sbjct: 449 FLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M++L+ +   ++   ++   M+   +  D  TY+I++ + G  G++E+ E +F  +  K
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PD   +   +  + +     +  + ++ M+ AG  P+  T   L+S     ++I + 
Sbjct: 569 NWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEA 628

Query: 234 TTLVRTM 240
             L++ M
Sbjct: 629 YELLQNM 635



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 58/121 (47%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+   GR  QF  + ++L  M +     +  TYN LI+ YGR  ++ 
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F  +     KPD VT+ + +  +++       +++++ M   G  PD  T  V+I
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVII 476

Query: 222 S 222
           +
Sbjct: 477 N 477


>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ AY  +G + K E   N+    G+ PD    N ++  YG+ G +EK+  V+  M+K  
Sbjct: 276 VIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRF 335

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +   + TYNI+I  +GR G IE M+  F+++    +KP+ +T+ S ++AYS+  L  +  
Sbjct: 336 FPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVN 395

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            I  ++ ++    D      +I+A      ++++  L   M +
Sbjct: 396 SILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFLEMRE 438



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 5/204 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-PDTFVINSMLNLY 119
           +  EM  LG+  +  +   ++  Y K     + E  +  M + G   PD F  NS++  Y
Sbjct: 221 ILSEMSYLGVECSTVTFNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAY 280

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G  G+ EKME+     +    + DI T+NILI  YG+ G  EK+  + + +  +   P V
Sbjct: 281 GNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTV 340

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+   +  + R        E F+ M   G  P+  T   L+SA S    + +V +++R 
Sbjct: 341 VTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQ 400

Query: 240 MHKDMKTALPIYF----NLYGEKG 259
           +          +F    N YG+ G
Sbjct: 401 VENSDVVLDTTFFNCIINAYGQAG 424



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 2/203 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSM 115
           +A  +FE M+  G+ PT+  +  L++AY ++G +AK    +++M   S  KPD +  + +
Sbjct: 146 EARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVYTYSVL 205

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME-GLFQSLPAKR 174
           +N+  +L +F+ +  +L+ M          T+N +IN YG+     +ME  L   +    
Sbjct: 206 INICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMFREMENSLTNMIEIGN 265

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD+ T+ S + AY       +  + + E    G  PD  T  +LI +       E++ 
Sbjct: 266 SVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKIN 325

Query: 235 TLVRTMHKDMKTALPIYFNLYGE 257
           +++  M K       + +N+  E
Sbjct: 326 SVIEFMKKRFFPPTVVTYNIIIE 348



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 7/204 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+LF F  +   Y            + E + +GI+P +K+  +L+ +Y K G   K   V
Sbjct: 268 PDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKINSV 327

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           I  M K    P     N ++  +GR G  E M+E    M+      +  TY  L++ Y +
Sbjct: 328 IEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSK 387

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G + K+  + + +    +  D   +   + AY +     +  E+F EM +  C PD  T
Sbjct: 388 AGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFLEMRERECMPDNVT 447

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
              +I A   +   E    L + M
Sbjct: 448 FATMIQAYRGQGMTEAAQALEKMM 471



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 8/187 (4%)

Query: 37  FLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           F L+  +P++  F   I        +   ++V E MK+    PT+ ++ +++  + + G+
Sbjct: 296 FQLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGD 355

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           +   +     M   G+KP+     S+++ Y + G   K+  +L  +E      D + +N 
Sbjct: 356 IENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNC 415

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +IN YG+ G ++KM  LF  +  +   PD VT+ + + AY R +      +  E+M+ A 
Sbjct: 416 IINAYGQAGDVDKMAELFLEMRERECMPDNVTFATMIQAY-RGQGMTEAAQALEKMMLAA 474

Query: 210 CYPDGGT 216
               GGT
Sbjct: 475 KGNSGGT 481



 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 9/214 (4%)

Query: 55  FSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  A  +FE + K+    P  +++  LL    K     +   +   M   GL+P   V  
Sbjct: 108 WKSALKIFELLRKQHWYEPRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYT 167

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++++ YG  G   K    +  M+  S    D+ TY++LINI  +    + +  +   +  
Sbjct: 168 ALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSY 227

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIE 231
             ++   VT+ + +  Y + K++R        MI+ G   PD  T   +I A  +  +IE
Sbjct: 228 LGVECSTVTFNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIE 287

Query: 232 QVTTL-----VRTMHKDMKTALPIYFNLYGEKGV 260
           ++        +  +  D+KT   I    YG+ G+
Sbjct: 288 KMEKWYNEFQLMGISPDIKT-FNILIKSYGKAGM 320


>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
           CCMP2712]
          Length = 363

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 45  NLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           N++ F  +I        +  A  + EEM   GI P ++++   ++A  K        G++
Sbjct: 132 NVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALGLL 191

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
            +M    +KPD  V ++++   G+ G +E    +   M++     D+  Y+ LI  Y R 
Sbjct: 192 ERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQRA 251

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G   +   +FQ +    ++P+V+ +T  +AA ++   +RR L + E M      PD    
Sbjct: 252 GEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMKADKLRPDAVAY 311

Query: 218 KVLISACSSEDQIEQVTTLVRTMHKD 243
             +ISA S   Q +   TL++ + +D
Sbjct: 312 NFVISALSRGGQWDAGLTLLQMLEED 337



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 7/197 (3%)

Query: 44  PNLFVFIFSIYFSDAHA-------VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL  +  +I   +  A       + E M    I P +  +  ++ A  K G       +
Sbjct: 166 PNLQAYSAAISACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARI 225

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M + GL PD    ++++  Y R G++ +  EV   MEK     ++  Y   I    +
Sbjct: 226 FQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAK 285

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +  GL + + A +L+PD V +   ++A SR   +   L + + + +    P+  T
Sbjct: 286 AGEWRRSLGLLERMKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLEEDEAQPNIST 345

Query: 217 AKVLISACSSEDQIEQV 233
              +I AC    Q E+ 
Sbjct: 346 YCTVIKACGDNGQWEKA 362



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 85/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  ++ EM+  GI P   +   L+TA  K G V+K   V  +M   G+  + +   +
Sbjct: 79  WQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERMQARGIVGNVYTFTA 138

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   +LG +++  ++L  M       ++  Y+  I+   +        GL + +  ++
Sbjct: 139 AISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALGLLERMTNEK 198

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPD++ +++ +AA  +  L+     IF++M   G  PD      LI A     +  +  
Sbjct: 199 IKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRAL 258

Query: 235 TLVRTMHK 242
            + + M K
Sbjct: 259 EVFQLMEK 266



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 98/201 (48%), Gaps = 10/201 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC----EGVINQMHKS-----GLKPDTFV 111
           V + +++ G+TPT  S+   ++A ++ G   +     + V +Q  ++      L+PDT  
Sbjct: 6   VLKSIEKEGLTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLRPDTVT 65

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            ++ ++   + G++++   +   ME      +  T+  LI    +GG + K   +F+ + 
Sbjct: 66  FSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERMQ 125

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           A+ +  +V T+T+ +++  +   ++R L++ EEMI  G  P+       ISAC    +  
Sbjct: 126 ARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEAR 185

Query: 232 QVTTLVRTM-HKDMKTALPIY 251
               L+  M ++ +K  + +Y
Sbjct: 186 PALGLLERMTNEKIKPDIIVY 206



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/190 (18%), Positives = 83/190 (43%), Gaps = 5/190 (2%)

Query: 59  HAVFEEMKR-----LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            +VF + +R       + P   +    ++A +K G   +   + ++M   G++P+ F   
Sbjct: 43  DSVFSQTERNKVAARSLRPDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFA 102

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++    + GQ  K  EV   M+      ++ T+   I+   + G  ++   L + + AK
Sbjct: 103 ALITACEKGGQVSKAFEVFERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAK 162

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++P++  +++ ++A  +    R  L + E M +    PD      +++AC      E  
Sbjct: 163 GIQPNLQAYSAAISACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPA 222

Query: 234 TTLVRTMHKD 243
             + + M ++
Sbjct: 223 ARIFQKMKRE 232


>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
 gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 78/157 (49%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           + +A  K   ++    +  +M + G  PDTF  N +++ +GR G+ ++  ++   +E   
Sbjct: 459 VFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSD 518

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y  D  +YN LIN  G+ G +++    F+ +  K L PDVVT+++ +  + +        
Sbjct: 519 YKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMAC 578

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +F+EM+  GCYP+  T  +L+       +  +   L
Sbjct: 579 RLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVDL 615



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S  H ++E+MK+ G  P   ++ +L++++ + G V +   +  ++  S  KPDT   NS
Sbjct: 469 ISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNS 528

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N  G+ G  ++       M +     D+ TY+ LI  +G+   +E    LF  + A+ 
Sbjct: 529 LINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEG 588

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
             P++VT+   L    R       ++++ ++   G  PD  T  VL
Sbjct: 589 CYPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLIPDSITYSVL 634



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 82/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH +F  M          + + +L      G   +   ++ ++H+ G+  DT + N++
Sbjct: 400 SEAHRLFCNMWNCHERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTVMYNTV 459

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            +  G+L Q   + ++   M++     D  TYNILI+ +GR G +++   +F+ L     
Sbjct: 460 FSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDY 519

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPD  ++ S +    +          F+EM + G  PD  T   LI      D++E    
Sbjct: 520 KPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACR 579

Query: 236 LVRTM 240
           L   M
Sbjct: 580 LFDEM 584



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 91/188 (48%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           +K+ G+  T  ++  L+ AY ++ N  K   V  +M K G   D F  N +L+   +  +
Sbjct: 202 IKKWGLRMTGYTYKCLVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSE 261

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +   +V   M++     D  TY I+I + G+ G  ++   LF+ +  K   P+V+ + +
Sbjct: 262 VDHAYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNT 321

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
            + A +  ++  + + +F +M++  C P   T  V++   ++E ++ ++  +V    K M
Sbjct: 322 MIQALANARMVDKAILLFLKMVEKECRPSEFTYSVILHLLATERKLHKLDEVVEVSKKYM 381

Query: 245 KTALPIYF 252
             ++  Y 
Sbjct: 382 SRSIYAYL 389



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A ++  EM+R G+  ++ +  +L+  Y  + ++ KC G+I    K GL+   +    
Sbjct: 160 FHLARSIVSEMERNGVRGSISTVNILIGFYENSEDLQKCIGLIK---KWGLRMTGYTYKC 216

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R    EK   V   M+K  +  DI  +N+L++   +   ++    +F+ +  K 
Sbjct: 217 LVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKH 276

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PD  T+T  +    +       LE+FEEM++ G  P+      +I A ++   +++  
Sbjct: 277 CEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAI 336

Query: 235 TLVRTM 240
            L   M
Sbjct: 337 LLFLKM 342



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 64/144 (44%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AV+ EMK+ G    + +  +LL A  K   V     V   M +   +PD +    M+ + 
Sbjct: 232 AVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMT 291

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G++G+ ++  E+   M    Y+ ++  YN +I        ++K   LF  +  K  +P  
Sbjct: 292 GKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKMVEKECRPSE 351

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFE 203
            T++  L   + ++   +  E+ E
Sbjct: 352 FTYSVILHLLATERKLHKLDEVVE 375



 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/154 (18%), Positives = 63/154 (40%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+    K G+ ++   +   M     + D     SML      G+  +  ++L  + +  
Sbjct: 389 LVRTLKKLGHASEAHRLFCNMWNCHERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKG 448

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + D   YN + +  G+   I  +  L++ +      PD  T+   ++++ R       +
Sbjct: 449 VSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAI 508

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           +IFEE+ D+   PD  +   LI+       +++ 
Sbjct: 509 KIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEA 542



 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/100 (22%), Positives = 47/100 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +AH  F+EM   G+ P + ++  L+  + KT  V     + ++M   G  P+    N
Sbjct: 538 HLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYN 597

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
            +L+   R G+  +  ++   +++     D  TY++L  +
Sbjct: 598 ILLDCLERSGRTAEAVDLYAKLKQQGLIPDSITYSVLARL 637


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 126/301 (41%), Gaps = 63/301 (20%)

Query: 12  CVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSD---AHA----VFEE 64
           C   RAP        P+ +H +  + L     PN+FVF   + F      HA    +FE 
Sbjct: 43  CTRLRAP--------PHYTHLLFNSTL----NPNVFVFTSMLRFYSHLQDHAKVVLMFEH 90

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  G+ P    + +L+ +    G      G    + K G   D FV N+++++Y RLG 
Sbjct: 91  MQGCGVRPDAFVYPILIKSAGNGG-----IGFHAHVLKLGHGSDAFVRNAVIDMYARLGP 145

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL--------- 175
                +V    E   Y   ++ +N +++ Y +     + + LF  +P + +         
Sbjct: 146 IGHARKVFD--EIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTG 203

Query: 176 ------------------KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
                             +  VV+W + L+ Y++  L    L +F+EM++AG  PD  T 
Sbjct: 204 YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTW 263

Query: 218 KVLISACSSEDQIEQVTTLVRTMHKD-------MKTALPIYFNLYGEKGVAR---SNLGQ 267
             +ISACSS        +LVRT+H+        ++TAL   +   G  G AR     LG 
Sbjct: 264 VTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGA 323

Query: 268 Y 268
           Y
Sbjct: 324 Y 324



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 8/179 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM   GI P   + + +++A S  G+      ++  +H+  ++ + FV  ++L++Y 
Sbjct: 247 LFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYA 306

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G       +    E G+Y   + T+N +I+ Y R G ++    LF ++P +    +VV
Sbjct: 307 KCGSIGAARRIFD--ELGAYRNSV-TWNAMISAYTRVGNLDSARELFNTMPGR----NVV 359

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           TW S +A Y++       +E+F+EMI A    PD  T   +ISAC     +E    +VR
Sbjct: 360 TWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVR 418



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 80  LLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++  Y++ G  A    +  +M     L PD   + S+++  G LG  E    V+  + + 
Sbjct: 364 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN 423

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                IS +N +I +Y R G +E  + +FQ +  +    DVV++ + ++ ++        
Sbjct: 424 QIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR----DVVSYNTLISGFAAHGHGVEA 479

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + +   M + G  PD  T   +++ACS    +E+
Sbjct: 480 INLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEE 513



 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 9/150 (6%)

Query: 61  VFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           +F+EM   K+L  TP   + + +++A    G +     V+  + ++ +K      N+M+ 
Sbjct: 380 LFKEMITAKKL--TPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 437

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y R G  E  + V   M       D+ +YN LI+ +   G   +   L  ++    ++P
Sbjct: 438 MYSRCGSMEDAKRVFQEMA----TRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP 493

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           D VT+   L A S   L     ++FE + D
Sbjct: 494 DRVTFIGVLTACSHAGLLEEGRKVFESIKD 523


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN+F +   I        + +A A+  EM  L I P + +  LL+  + K GNV +  G
Sbjct: 294 SPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARG 353

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V+  M + G++P+    +S++N Y    +  +  ++   M       D+ +YNILIN Y 
Sbjct: 354 VLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYC 413

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   I + + LF  +  + L PD+V++ + +    +    R   ++F+ M+  G  PD  
Sbjct: 414 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLC 473

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
           T  +L+     +  + +   L R M 
Sbjct: 474 TYSILLDGFCKQGYLAKAFRLFRAMQ 499



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 92/187 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ M   G  P + S+ +L+  Y K   + + + + N+M   GL PD    N+++
Sbjct: 385 EARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLI 444

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +LG+  +  ++   M       D+ TY+IL++ + + G++ K   LF+++ +  LK
Sbjct: 445 DGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLK 504

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++V +   + A  + +  +   ++F E+   G  P+      +I+    E  +++    
Sbjct: 505 PNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEA 564

Query: 237 VRTMHKD 243
            R M +D
Sbjct: 565 FRNMEED 571



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 89/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F +M   G  P + ++  ++ +  K   V +   + + M   G+ P+ F  NS++ 
Sbjct: 246 AAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQ 305

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 ++ +   +L  M   +   +I T+++LINI+ + G + +  G+ +++    ++P
Sbjct: 306 GLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEP 365

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVT++S +  YS +       ++F+ MI  GC PD  +  +LI+      +I +   L 
Sbjct: 366 NVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLF 425

Query: 238 RTM 240
             M
Sbjct: 426 NEM 428



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM   G+TP + S+  L+    + G + +   +   M  +G  PD    + +L
Sbjct: 420 EAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILL 479

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G   K   +  AM+      ++  YNILI+   +   +++   LF  L  + L+
Sbjct: 480 DGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQ 539

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           P+V  +T+ +    ++ L    LE F  M + GC P+  +  V+I
Sbjct: 540 PNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVII 584



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 83/178 (46%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           ++M+  G++P   +  +L+  + +   V     V+ ++ K GL+      N+++N   ++
Sbjct: 146 KQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKV 205

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G+F +  E+   M    Y  D+ TY  +IN   + G      GLF+ +     +PDVVT+
Sbjct: 206 GKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTY 265

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + +  + +     L+IF  M   G  P+  T   LI    +  +  + + ++  M
Sbjct: 266 STIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 323



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/181 (18%), Positives = 79/181 (43%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V  ++ +LG+  T+ +   L+    K G   +   + + M   G +PD     +++N  
Sbjct: 178 SVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGL 237

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++G+      +   M +     D+ TY+ +I+   +   + +   +F  + AK + P++
Sbjct: 238 CKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNI 297

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+ S +        +R    +  EM+     P+  T  +LI+    E  + +   +++T
Sbjct: 298 FTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKT 357

Query: 240 M 240
           M
Sbjct: 358 M 358



 Score = 40.4 bits (93), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/98 (21%), Positives = 49/98 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y + A  +F  M+   + P M  + +L+ A  K+ N+ +   + +++   GL+P+  +  
Sbjct: 487 YLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYT 546

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +++N   + G  ++  E    ME+     +  +YN++I
Sbjct: 547 TIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVII 584


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+ F +   I       +   AH +F EM   G TP + ++ +++  ++K  N      
Sbjct: 466 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALK 525

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M  +G +PD    + ++ + G  G  E+ E V T M++ ++  D   Y +L++++G
Sbjct: 526 LYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWG 585

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +EK    +Q++    L+P+V T  S L+ + R        E+ + M+  G  P   
Sbjct: 586 KAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQ 645

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 646 TYTLLLSCCT 655



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + + +EM R G  P   ++  L+ +Y +   + +   V NQM ++G KPD     +
Sbjct: 380 FGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCT 439

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +   ++   M+ G  + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 440 LIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +  +++ + Y+  L+++ +M +AG  PD  T  +++        +E+  
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559

Query: 235 TLVRTM-HKDMKTALPIY---FNLYGEKG 259
            +   M  K+     P+Y    +L+G+ G
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAG 588



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 1/197 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y ++A  VF +M+  G  P   ++  L+  ++K G +     +  +M   GL PDTF  +
Sbjct: 414 YLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYS 473

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N  G+ G      ++   M       ++ TYNI+++++ +    +    L++ +   
Sbjct: 474 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNA 533

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PD VT++  +              +F EM      PD     +L+        +E+ 
Sbjct: 534 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593

Query: 234 TTLVRTM-HKDMKTALP 249
               + M H  ++  +P
Sbjct: 594 WQWYQAMLHAGLRPNVP 610



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/187 (18%), Positives = 87/187 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +++ M+  G++P   ++ +++    K G++     +  +M   G  P+    N
Sbjct: 449 FLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M++L+ +   ++   ++   M+   +  D  TY+I++ + G  G++E+ E +F  +  K
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PD   +   +  + +     +  + ++ M+ AG  P+  T   L+S     ++I + 
Sbjct: 569 NWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEA 628

Query: 234 TTLVRTM 240
             L++ M
Sbjct: 629 YELLQNM 635



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 58/121 (47%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+   GR  QF  + ++L  M +     +  TYN LI+ YGR  ++ 
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F  +     KPD VT+ + +  +++       +++++ M   G  PD  T  V+I
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVII 476

Query: 222 S 222
           +
Sbjct: 477 N 477


>gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 711

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H+    +  +S+  +   A+A FE M+R GI P+++++  LL A+ + G+      +   
Sbjct: 481 HSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKL 540

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  ++      N++++ + + G +++  +V++          + TYN+L+N Y RGG 
Sbjct: 541 MRRYKVEGTRVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGQ 600

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             K+  L + + A  LKPD VT+++ + A+ R + + +     +EM+ +G   D
Sbjct: 601 HSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVID 654



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 1/199 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +  E+++ G++     +  L+ AY K+  V + EG+  +M   G+K      N +
Sbjct: 356 SEALIILSELEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNIL 415

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKR 174
           +  Y R  Q E +E+++  M+      +  +Y  LI+ YG+   +  M    F  +    
Sbjct: 416 MYAYSRKMQPEIVEKLMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDG 475

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP   ++T+ + AYS    + +    FE M   G  P   T   L+ A       + + 
Sbjct: 476 IKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLM 535

Query: 235 TLVRTMHKDMKTALPIYFN 253
            + + M +       + FN
Sbjct: 536 KIWKLMRRYKVEGTRVTFN 554



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 85/178 (47%), Gaps = 1/178 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EM+  G+ P  KS+  L++AY K  N++        +M K G+KP +    ++++ Y   
Sbjct: 434 EMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVS 493

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  EK       M++      I TY  L++ + R G  + +  +++ +   +++   VT+
Sbjct: 494 GWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGTRVTF 553

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + +  +++   Y+   ++  +  + G +P   T  +L++A +   Q  ++  L+  M
Sbjct: 554 NTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGQHSKLPELLEEM 611



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSM 115
           DA  V+E M+   + P   +  +++    K G+ AK       +M+  G+K    V+ ++
Sbjct: 286 DAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGAL 345

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  +   G   +   +L+ +EK   +++   YN L++ Y +   +E+ EGLF  +  K +
Sbjct: 346 IKSFCVEGLMSEALIILSELEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFIEMKTKGI 405

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           K    T+   + AYSRK       ++  EM DAG  P+  +   LISA
Sbjct: 406 KHTEATFNILMYAYSRKMQPEIVEKLMAEMQDAGLKPNAKSYTCLISA 453



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 50/100 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++ +A  V  +   +G+ PT+ ++ +L+ AY++ G  +K   ++ +M    LKPD+   +
Sbjct: 565 HYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGQHSKLPELLEEMAAHNLKPDSVTYS 624

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M+  + R+  F +       M K     D ++Y  L  I
Sbjct: 625 TMIYAFLRVRDFSQAFFYHQEMVKSGQVIDFNSYQKLRAI 664


>gi|18417671|ref|NP_567856.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635625|sp|O65567.2|PP342_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30825, chloroplastic; Flags: Precursor
 gi|332660415|gb|AEE85815.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 904

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 8/194 (4%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN   F  +  +Y     F   + +F   KR G+   + S+  ++ AY K  +      
Sbjct: 696 TPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVI-SYNTIIAAYGKNKDYTNMSS 754

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            I  M   G        N++L+ YG+  Q EK   +L  M+K +   D  TYNI+INIYG
Sbjct: 755 AIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYG 814

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             G+I+++  + + L    L PD+ ++ + + AY    +    + + +EM      PD  
Sbjct: 815 EQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKV 874

Query: 216 TAKVLISACSSEDQ 229
           T   L++A    D+
Sbjct: 875 TYTNLVTALRRNDE 888



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F  M   G+ P + +  +L+  Y K  NV + E   + M K G+  ++   +SM+ 
Sbjct: 229 ASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCES-AYSSMIT 287

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y RL  ++K EEV+  M++      +  + +++N Y + G +E  E +  S+ A    P
Sbjct: 288 IYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSP 347

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +++ + + +  Y +         +F  + + G  PD  + + +I      D  E+
Sbjct: 348 NIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEE 402



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 5/168 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG--LKPDTFVINS 114
           +A   F  M++ GI     ++  ++T Y++     K E VI+ M +    LK + +++  
Sbjct: 263 EAEFAFSHMRKFGIVCE-SAYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLV-- 319

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y + G+ E  E +L +ME   ++ +I  YN LI  YG+   +E  +GLF  L    
Sbjct: 320 MLNAYSQQGKMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIG 379

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           L+PD  ++ S +  + R   Y      ++E+   G  P+      LI+
Sbjct: 380 LEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLIN 427



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 1/182 (0%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
             FEEM R G TP   +  +LL  Y K     K   +     + G+  D    N+++  Y
Sbjct: 685 GTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGV-VDVISYNTIIAAY 743

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+   +  M   +  M+   ++  +  YN L++ YG+   +EK   + + +      PD 
Sbjct: 744 GKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDH 803

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+   +  Y  +       ++ +E+ ++G  PD  +   LI A      +E+   LV+ 
Sbjct: 804 YTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKE 863

Query: 240 MH 241
           M 
Sbjct: 864 MR 865



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 111/261 (42%), Gaps = 45/261 (17%)

Query: 42  HTPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H  +  + I+++   FS+A  ++  +K  G+        +++  Y K G++ +   V+  
Sbjct: 559 HITSTMIDIYTVMGEFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEI 618

Query: 100 M-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           M  +  + PD ++   ML +Y +    +K++ +   + K     +   YN +IN   R  
Sbjct: 619 MDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARAL 678

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF-----EEMIDAGCYP- 212
            ++++ G F+ +      P+ VT+   L  Y + KL+++  E+F       ++D   Y  
Sbjct: 679 PLDELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNT 738

Query: 213 -----------------------DGGTAKV-----LISACSSEDQIEQVTTLVRTMHKDM 244
                                  DG +  +     L+ A   + Q+E+  ++++ M K  
Sbjct: 739 IIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKK-- 796

Query: 245 KTALP------IYFNLYGEKG 259
            T+ P      I  N+YGE+G
Sbjct: 797 STSGPDHYTYNIMINIYGEQG 817



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 82/180 (45%), Gaps = 1/180 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++  +++ GI    + +  ++   ++   + +  G   +M + G  P+T   N +L++YG
Sbjct: 651 LYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGFTPNTVTFNVLLDVYG 710

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +   F+K+ E L  + K     D+ +YN +I  YG+      M    +++        + 
Sbjct: 711 KAKLFKKVNE-LFLLAKRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLE 769

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + L AY + K   +   I + M  +   PD  T  ++I+    +  I++V  +++ +
Sbjct: 770 AYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKEL 829



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 71/156 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V + MK+  +   +++ +++L AYS+ G +   E ++  M  +G  P+    N+
Sbjct: 295 YDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYNT 354

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  YG++ + E  + +   +       D ++Y  +I  +GR    E+ +  +Q L    
Sbjct: 355 LITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCG 414

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
            KP+     + +   ++       ++  E+M   GC
Sbjct: 415 YKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGC 450


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 35/218 (16%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGN---VAKCEGVINQ------------------ 99
           V  +MK  G  PT  S+ L+L  Y+K GN   + + E  IN+                  
Sbjct: 555 VISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANF 614

Query: 100 --------------MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
                           K G KPD  + NSML+++ R   +++ E +L ++ +     D+ 
Sbjct: 615 KCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLV 674

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN L+++Y R G   K E + ++L   +LKPD+V++ + +  + RK L +  + +  EM
Sbjct: 675 TYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEM 734

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            + G  P   T    +S  ++     ++  ++  M K+
Sbjct: 735 TERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKN 772



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 85/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + +   F   K+ G  P M     +L+ +++     + EG++  +H+ GL PD    NS
Sbjct: 619 LAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNS 678

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y R G+  K EE+L  +EK     D+ +YN +I  + R G +++   +   +  + 
Sbjct: 679 LMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERG 738

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P + T+ + ++ Y+   +Y    ++ E M    C P+  T K+++  
Sbjct: 739 IRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDG 787



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 36/225 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLK------- 106
           +  A  +FE MK +G +PT+ ++ ++L  + K G +  K  GV+ +M   GLK       
Sbjct: 233 YEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCS 292

Query: 107 ----------------------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
                                       P T   N++L ++G+ G + +   VL  ME+ 
Sbjct: 293 TVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEEN 352

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +  AD  TYN L+  Y R GF ++   + + +  K + P+ +T+T+ + AY +       
Sbjct: 353 NCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEA 412

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           L++F  M +AGC P+  T   ++S    + +  ++  ++  M  +
Sbjct: 413 LKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSN 457



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 4/222 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A +V +EM+         ++  L+ AY++ G   +   VI  M + G+
Sbjct: 330 LQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGV 389

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+     ++++ YG+ G+ ++  ++  +M++     +  TYN ++++ G+     +M  
Sbjct: 390 MPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIK 449

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
           +   + +    P+  TW + LA    K + +    +F EM   G  PD  T   LISA  
Sbjct: 450 MLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYG 509

Query: 224 -CSSE-DQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARS 263
            C SE D  +    + R       T      N    KG  RS
Sbjct: 510 RCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRS 551



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 83/184 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F E+K  G  P   ++  LL  + K G   +   V+ +M ++    D+   N ++
Sbjct: 306 EAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELV 365

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y R G  ++   V+  M +     +  TY  +I+ YG+ G  ++   LF S+      
Sbjct: 366 AAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCV 425

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+ + L+   +K      +++  +M   GC+P+  T   +++ C ++   + V  +
Sbjct: 426 PNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRV 485

Query: 237 VRTM 240
            R M
Sbjct: 486 FREM 489



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 1/151 (0%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
           ++++  +L AYS+TG   K   +  +M + G  P     N +L+++G++G+ + K+  VL
Sbjct: 217 VRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVL 276

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             M       D  T + +++   R G + + +  F  L +   +P  VT+ + L  + + 
Sbjct: 277 EEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKA 336

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +Y   L + +EM +  C  D  T   L++A
Sbjct: 337 GVYTEALSVLKEMEENNCPADSVTYNELVAA 367



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 96/210 (45%), Gaps = 4/210 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  V E M + G+ P   ++  ++ AY K G   +   +   M ++G  P+T   N
Sbjct: 373 FSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYN 432

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L++ G+  +  +M ++L  M+      + +T+N ++ + G  G  + +  +F+ + + 
Sbjct: 433 AVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSC 492

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PD  T+ + ++AY R        +++ EM  AG      T   L++A + +      
Sbjct: 493 GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSG 552

Query: 234 TTLVRTMH----KDMKTALPIYFNLYGEKG 259
             ++  M     K  +T+  +    Y + G
Sbjct: 553 ENVISDMKSKGFKPTETSYSLMLQCYAKGG 582



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 1/141 (0%)

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           E ++   +   LK D  VI  ++ + GR  Q+    ++L  +    Y  D+  Y  +++ 
Sbjct: 167 EWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTTILHA 226

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYP 212
           Y R G  EK   LF+ +      P +VT+   L  + +  + +R+ L + EEM   G   
Sbjct: 227 YSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKF 286

Query: 213 DGGTAKVLISACSSEDQIEQV 233
           D  T   ++SAC+ E  + + 
Sbjct: 287 DEFTCSTVLSACAREGLLREA 307



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 1/146 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +MK  G  P   +   +L      G       V  +M   G +PD    N++++ YGR G
Sbjct: 453 DMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCG 512

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
                 ++   M +  + A ++TYN L+N   R G     E +   + +K  KP   +++
Sbjct: 513 SEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYS 572

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAG 209
             L  Y++   Y   +E  EE I+ G
Sbjct: 573 LMLQCYAKGGNYLG-IERIEEGINEG 597



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 19/101 (18%), Positives = 55/101 (54%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + +++  + P + S+  ++  + + G + +   ++++M + G++P  F  N+ ++
Sbjct: 692 AEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVS 751

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            Y  +G + ++E+V+  M K     +  T+ ++++ Y R G
Sbjct: 752 GYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 792


>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
 gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g51965, mitochondrial; Flags: Precursor
 gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
           Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
           thaliana]
 gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
          Length = 650

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 8/216 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  ++   G+      +  + +A  K   ++    +  +M K G  PD F  N ++
Sbjct: 425 EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILI 484

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +GR+G+ ++   +   +E+     DI +YN LIN  G+ G +++    F+ +  K L 
Sbjct: 485 ASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLN 544

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+++ +  + + +       +FEEM+  GC P+  T  +L+       +  +   L
Sbjct: 545 PDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDL 604

Query: 237 VRTMHKDMKTALPIYFNL--------YGEKGVARSN 264
              M +   T   I + +        +G+  + R N
Sbjct: 605 YSKMKQQGLTPDSITYTVLERLQSVSHGKSRIRRKN 640



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 92/187 (49%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + S+AH +F +M    +     S+M +L +    G   +   +++++H+ G+  DT + N
Sbjct: 387 HVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYN 446

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++ +  G+L Q   + ++   M+K   + DI TYNILI  +GR G +++   +F+ L   
Sbjct: 447 TVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERS 506

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KPD++++ S +    +          F+EM + G  PD  T   L+      +++E  
Sbjct: 507 DCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMA 566

Query: 234 TTLVRTM 240
            +L   M
Sbjct: 567 YSLFEEM 573



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 83/166 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S  H +FE+MK+ G +P + ++ +L+ ++ + G V +   +  ++ +S  KPD    NS
Sbjct: 458 ISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNS 517

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N  G+ G  ++       M++     D+ TY+ L+  +G+   +E    LF+ +  K 
Sbjct: 518 LINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKG 577

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            +P++VT+   L    +       ++++ +M   G  PD  T  VL
Sbjct: 578 CQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVL 623



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 3/173 (1%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           LL AY ++ + +K   V  ++ + G K D F  N +L+    L + EK  +V   M+K  
Sbjct: 209 LLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDA---LAKDEKACQVFEDMKKRH 265

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TY I+I   GR G  ++  GLF  +  + L  +VV + + +   ++ K+  + +
Sbjct: 266 CRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAI 325

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
           ++F  M++ GC P+  T  +L++   +E Q+ ++  +V    + M   +  Y 
Sbjct: 326 QVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYL 378



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 69/163 (42%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   SK G+V++   +   M    +K +     SML      G+  +  E+L+ + +  
Sbjct: 378 LVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKG 437

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D   YN + +  G+   I  +  LF+ +      PD+ T+   +A++ R       +
Sbjct: 438 VVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAI 497

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            IFEE+  + C PD  +   LI+       +++     + M +
Sbjct: 498 NIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQE 540



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 108 DTFVINSMLNLYGRLG---QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           D F+ N ++ +  R     +F+++  +L +M K +   +IST NILI  +G     E ++
Sbjct: 132 DPFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGN---TEDLQ 188

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
              + +    LK +  T+   L AY R + Y +  +++ E+   G   D     +L+ A 
Sbjct: 189 MCLRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDAL 248

Query: 225 SSEDQIEQVTTLVRTMH 241
           + +++  QV   ++  H
Sbjct: 249 AKDEKACQVFEDMKKRH 265


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 93/185 (50%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +FEEM    I P + ++  L+    K+G  +    ++++MH  G   +    NS+
Sbjct: 355 DEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSI 414

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +    +K   +LT +++     DI TY +LIN   + G ++  + +F+ L  K  
Sbjct: 415 LDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGY 474

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P++ T+TS +  +  K  +   L +  +M D GC P+  T ++LI +   +D+ ++   
Sbjct: 475 SPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEK 534

Query: 236 LVRTM 240
           L+R M
Sbjct: 535 LLREM 539



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 86/180 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  M    I P + +  +L+  + K G V + + V+  M K  +K D    NS+++
Sbjct: 252 AVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMD 311

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y  + Q  K + +   M +     D+ +Y+I+IN + +   +++   LF+ +  K++ P
Sbjct: 312 GYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFP 371

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVT+ S +    +       LE+ +EM D G   +  T   ++ A    + +++   L+
Sbjct: 372 NVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLL 431



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 93/198 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  ++ EM    I+P + ++  L++ +   G +     + N+M    + P+ +  + +
Sbjct: 215 NDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSIL 274

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+  + + VL  M K +   D+ TYN L++ Y     + K + LF  +  + +
Sbjct: 275 IDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGV 334

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV +++  +  + + K+    +++FEEM     +P+  T   L+       +      
Sbjct: 335 TPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALE 394

Query: 236 LVRTMHKDMKTALPIYFN 253
           LV  MH   + +  I +N
Sbjct: 395 LVDEMHDRGQPSNIITYN 412



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 92/204 (45%), Gaps = 6/204 (2%)

Query: 43  TPNLFVFIFS----IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           T NL +  FS    I FS   +VF ++ + G  P   +  +L+      G V K     +
Sbjct: 95  TCNLLMNCFSQLGHIKFS--FSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHD 152

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           ++   G + D     +++N   R+G+ +   ++L  ++      ++  Y+ +I+   +  
Sbjct: 153 KVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDK 212

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            +     L+  + +KR+ PDVVT++S ++ +      +  +++F  MI     P+  T  
Sbjct: 213 LVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFS 272

Query: 219 VLISACSSEDQIEQVTTLVRTMHK 242
           +LI     E ++ +   ++  M K
Sbjct: 273 ILIDGFCKEGKVREAKNVLAVMMK 296



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 80/189 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A ++ ++M+  GI P   +  LL+  +S+ G++     V  ++ K G  PD      
Sbjct: 74  YQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTI 133

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G+  K       +    +  D  +Y  LIN   R G  +    L + +  K 
Sbjct: 134 LIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKL 193

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VV +++ + +  + KL     +++ EM+     PD  T   LIS      +++   
Sbjct: 194 VRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAV 253

Query: 235 TLVRTMHKD 243
            L   M  D
Sbjct: 254 DLFNRMISD 262



 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 55/122 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +  ++K  GI P + ++ +L+    K G +   + V   +   G  P+ +   
Sbjct: 423 HVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYT 482

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++N +   G F++   +L+ M+      +  TY ILI+        +K E L + + A+
Sbjct: 483 SLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIAR 542

Query: 174 RL 175
            L
Sbjct: 543 GL 544


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 96/199 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   H V  +M   G TP ++ +  ++    K G++     ++N+M   GLKP+    N+
Sbjct: 267 FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L       ++++ EE+L+ M +     D  T+NIL++ + + G ++++  L + + +  
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV+T+T+ +  + ++ L    + + + M   GC P+  +  +++    S  +     
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M +      P+ FN
Sbjct: 447 ELMSQMIQQGCPPNPVTFN 465



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 78/184 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  ++   G    + S+  +L            E ++++M +    P+    N+++
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLI 258

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R G FE++ EVL  M +     DI  Y  +I+   + G +E    +   +P+  LK
Sbjct: 259 GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VV + + L      + ++   E+  EM    C  D  T  +L+        +++V  L
Sbjct: 319 PNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIEL 378

Query: 237 VRTM 240
           +  M
Sbjct: 379 LEQM 382



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 75/186 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  V +EM   G  P    + ++L A  ++G       V+  MH  G   DT   N 
Sbjct: 127 IADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNL 186

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN     G  ++   +L  +      ADI +YN ++           +E L   +    
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+ + +    R  L+ R  E+  +M + GC PD      +I     E  +E   
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 235 TLVRTM 240
            ++  M
Sbjct: 307 EILNRM 312



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 79/176 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M   G  P + ++  ++  + K G + +   ++  M   G KP+T     +L    
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G++   EE+++ M +     +  T+N LIN   + G +E+   L + +      PD++
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 497

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           ++++ +    +       LE+   M++ G  P+      +  A S E ++ +V  +
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 69/173 (39%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P   +   ++      G +A    V+++M   G  P   + + +L    R G F    
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            VL AM       D    N+++N     G +++  GL + L     + D+V++ + L   
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
              K +    E+ +EM+   C P+  T   LI         E+V  ++  M +
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 82/203 (40%), Gaps = 12/203 (5%)

Query: 27  PYPSHF-MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           P P  F  LINFL  +                A  + ++M   G +P + S+  ++    
Sbjct: 459 PNPVTFNTLINFLCKKG-----------LVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K G   +   ++N M   G+ P+T + +S+     R G+  K+ ++   ++  +  +D  
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            YN +I+   +    ++    F  + +    P+  T+T  +   + + L +   E+  E+
Sbjct: 568 LYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627

Query: 206 IDAGCYPDGGTAKVLISACSSED 228
              G           IS C+ E+
Sbjct: 628 CSRGALRKHLMRHFGISNCTQEN 650


>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 494

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 87/161 (54%), Gaps = 1/161 (0%)

Query: 62  FEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           FE+MK +    P + ++ +L  A+++   V +   +   + +S +  D +  N +++ YG
Sbjct: 189 FEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYG 248

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  ++ME +L  M+      DI ++N+LI+ YG+    +KME +F+SL   + +P + 
Sbjct: 249 KNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLP 308

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           T+ S +  Y + +L  +  E+F +M D G  P   T + LI
Sbjct: 309 TFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLI 349



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 44  PNLFVF-IFSIYFSDAHAV------FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  + I +  F+ A  V      F+++    ++  + ++  ++ AY K GN+ + E +
Sbjct: 200 PNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGKNGNIKEMELM 259

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M  + +KPD    N +++ YG+   F+KME+V  ++ +      + T+N +I  YG+
Sbjct: 260 LARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGK 319

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
               EK E +F+ +      P  VT  S +  Y       +  EIF+ M+++G
Sbjct: 320 ARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSG 372



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 66/159 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     VF+ + R    PT+ +   ++T Y K     K E V  +M   G  P      S
Sbjct: 288 FDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCES 347

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +YG      K  E+   M        +ST N ++++Y   G   + + LF+S    R
Sbjct: 348 LIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMR 407

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + PD  T+     AY++        ++ + M  AG  P+
Sbjct: 408 VFPDSTTYKLLYKAYTKADKKELLEKLLKNMDKAGIIPN 446



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           MK   I P + S  LL+ +Y K     K E V   + +S  +P     NSM+  YG+   
Sbjct: 263 MKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARL 322

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            EK EEV   M+   Y     T   LI +YG    + K   +F  +     +  V T  +
Sbjct: 323 REKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNA 382

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            L  Y    L      +FE   +   +PD  T K+L  A +  D+ E +  L++ M K
Sbjct: 383 MLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELLEKLLKNMDK 440



 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 22/220 (10%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-PDTFVIN 113
           FSD   + + + +       +   LL     K     +C  V   M K      D  V +
Sbjct: 72  FSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWLECLEVFRWMQKQRWYIADNGVYS 131

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-----------GFIEK 162
            ++++ G+ GQ      + + M       D S YN LI  +               + EK
Sbjct: 132 KLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYFEK 191

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           M+G+      +R KP++VT+     A+++     +   +F+++ ++    D  T   ++ 
Sbjct: 192 MKGM------ERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMD 245

Query: 223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEK 258
           A      I+++  ++  M  +      I FNL    YG+K
Sbjct: 246 AYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKK 285


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 87/169 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ ++ R G TP + ++ +L+  + K GN  +   V++ +   G KP+    N++L+   
Sbjct: 130 VYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACN 189

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R GQ E    V   M         +TY  LI+ YG+ G IE+   +FQ +  +  + +V+
Sbjct: 190 RSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVI 249

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           T++S ++A  +   ++  LE+ +EM    C P+  T   L+SAC+   Q
Sbjct: 250 TYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQ 298



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 92/190 (48%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  G+   + ++  L+    K   +     V  Q+ + G  P+    N +++++G++G
Sbjct: 98  EMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMG 157

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            +++  +VL A+E      ++ TYN +++   R G  E    +++ + A   +P   T+T
Sbjct: 158 NWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYT 217

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + ++AY +       L IF++M+  GC  +  T   LISAC    + +    L+  MH+D
Sbjct: 218 ALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRD 277

Query: 244 MKTALPIYFN 253
                 + FN
Sbjct: 278 NCKPNTVTFN 287



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 85/163 (52%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+E M   G  PT  ++  L++AY KTG + +   +   M + G + +    +S+++   
Sbjct: 200 VYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACE 259

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+++   E+L  M + +   +  T+N L++   +GG  +  + +F+ +P+   KPD V
Sbjct: 260 KAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAV 319

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++   ++A+ R   + R L+  +EM   G  PD G   V+I A
Sbjct: 320 SYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEA 362



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPNL  +  +  I+     + +A  V + ++  G  P ++++  +L+A +++G       
Sbjct: 140 TPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALR 199

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V  +M   G +P      ++++ YG+ G+ E+   +   M +     ++ TY+ LI+   
Sbjct: 200 VYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACE 259

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  +    L   +     KP+ VT+ + L+A ++   ++   ++FE+M   GC PD  
Sbjct: 260 KAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAV 319

Query: 216 TAKVLISA 223
           +  +LISA
Sbjct: 320 SYAILISA 327



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 72/145 (49%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M   G+  +    ++++N+  +  + E   +V   + +     ++ TYNILI+I+G
Sbjct: 95  LVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHG 154

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  ++   +  +L  +  KP+V T+ + L+A +R       L ++E M+  G  P   
Sbjct: 155 KMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTAT 214

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   LISA     +IE+   + + M
Sbjct: 215 TYTALISAYGKTGKIEEALRIFQDM 239



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM R    P   +   LL+A ++ G     + V  QM   G KPD      +++ + 
Sbjct: 270 LLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFD 329

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE---KMEGLFQSLPAK-RLK 176
           R  Q+ +  + L  M+   +  D+  YN++I    R G +    K   +FQ+   + +L+
Sbjct: 330 RGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRSGVLSAQLKAAQIFQAATRQGQLR 389

Query: 177 PDVVTWTSRLAAYSRKKLYR 196
            D  +    L A   K   R
Sbjct: 390 CDAASANLPLPAIVSKDTVR 409



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D +   ++++  G   Q  K  E++  M       ++ TY+ L+N+  +   +E    ++
Sbjct: 72  DVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             L  +   P++VT+   +  + +   ++  +++ + + D G  P+  T   ++SAC+  
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRS 191

Query: 228 DQIEQVTTLVRTMHKD----MKTALPIYFNLYGEKG 259
            Q E    +   M  D      T      + YG+ G
Sbjct: 192 GQPEHALRVYERMLADGAQPTATTYTALISAYGKTG 227


>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 5/210 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVIN 113
           F     +F EM  LGI  +  ++  ++  Y K       E  + +M +SG   PD F +N
Sbjct: 215 FDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLN 274

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S +  YG  GQ EKME+     +      DI T+NILI  YG+    EKM  + + +  +
Sbjct: 275 SFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKR 334

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P +VT+   +  + R     +  E F +M   G  P+  T   L+SA S    +++V
Sbjct: 335 FYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKV 394

Query: 234 TTLVRTMHKDMKTALPIYFNL----YGEKG 259
            +++R +     T    +FN     YG+ G
Sbjct: 395 DSILRQIENSDVTLDTPFFNCVLSAYGQAG 424



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 84/160 (52%)

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
           AY  +G + K E   ++    G++PD    N ++  YG+   +EKM  V+  M+K  Y+ 
Sbjct: 279 AYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSP 338

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
            I T+NI+I ++GR G IEKME  F  +  + +KP+ +T+ S ++AYS+    ++   I 
Sbjct: 339 TIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSIL 398

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            ++ ++    D      ++SA      +E++  L   M +
Sbjct: 399 RQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKE 438



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 85/179 (47%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           ++E + +GI P +K+  +L+ +Y K     K   V+  M K    P     N ++ ++GR
Sbjct: 293 YDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGR 352

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G  EKMEE    M+      +  TY  L++ Y + G+++K++ + + +    +  D   
Sbjct: 353 VGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPF 412

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +   L+AY +     R  E+F  M +  C PD  T   +I A +++  IE    L   M
Sbjct: 413 FNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGMIEAAQNLEVNM 471



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 74/131 (56%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V E MK+   +PT+ +  +++  + + GN+ K E    +M   G+KP++    S+++ Y
Sbjct: 326 SVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAY 385

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G  +K++ +L  +E      D   +N +++ YG+ G +E+M  LF  +  ++ KPD 
Sbjct: 386 SKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDN 445

Query: 180 VTWTSRLAAYS 190
           +T+ + + AY+
Sbjct: 446 ITFATMIQAYN 456



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 2/202 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSML 116
           A  +FE M   G+ PT+  +  L++AY  +G + K    +  M   S  KPD +  + ++
Sbjct: 147 ASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILI 206

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME-GLFQSLPAKRL 175
                LG+F+ +E + T M          TYN +I+ YG+    E ME  L + + +   
Sbjct: 207 KCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTC 266

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+ T  S + AY       +  + ++E    G  PD  T  +LI +       E++ +
Sbjct: 267 LPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVS 326

Query: 236 LVRTMHKDMKTALPIYFNLYGE 257
           ++  M K   +   + FN+  E
Sbjct: 327 VMEFMKKRFYSPTIVTFNIVIE 348



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 2/164 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P  +++  LL    K     +   +   M   GL+P   V  ++++ YG  GQ +K    
Sbjct: 126 PRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCT 185

Query: 132 LTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +  M+  S    D+ TY+ILI      G  + +E +F  +    ++   VT+ + +  Y 
Sbjct: 186 VEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYG 245

Query: 191 RKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIEQV 233
           +  ++        EMI++G C PD  T    I A  +  QIE++
Sbjct: 246 KADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKM 289


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+ F +   I       +   AH +F EM   G TP + ++ +++  ++K  N      
Sbjct: 583 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALK 642

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M  +G +PD    + ++ + G  G  E+ E V T M++ ++  D   Y +L++++G
Sbjct: 643 LYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWG 702

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +EK    +Q++    L+P+V T  S L+ + R        E+ + M+  G  P   
Sbjct: 703 KAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQ 762

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 763 TYTLLLSCCT 772



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + + +EM R G  P   ++  L+ +Y +   + +   V NQM ++G KPD     +
Sbjct: 497 FGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCT 556

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +   ++   M+ G  + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 557 LIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 616

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +  +++ + Y+  L+++ +M +AG  PD  T  +++        +E+  
Sbjct: 617 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 676

Query: 235 TLVRTM-HKDMKTALPIY---FNLYGEKG 259
            +   M  K+     P+Y    +L+G+ G
Sbjct: 677 AVFTEMQQKNWIPDEPVYGLLVDLWGKAG 705



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 1/197 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y ++A  VF +M+  G  P   ++  L+  ++K G +     +  +M   GL PDTF  +
Sbjct: 531 YLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYS 590

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N  G+ G      ++   M       ++ TYNI+++++ +    +    L++ +   
Sbjct: 591 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNA 650

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PD VT++  +              +F EM      PD     +L+        +E+ 
Sbjct: 651 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 710

Query: 234 TTLVRTM-HKDMKTALP 249
               + M H  ++  +P
Sbjct: 711 WQWYQAMLHAGLRPNVP 727



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 86/183 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++ M+  G++P   ++ +++    K G++     +  +M   G  P+    N M++
Sbjct: 570 AMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 629

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           L+ +   ++   ++   M+   +  D  TY+I++ + G  G++E+ E +F  +  K   P
Sbjct: 630 LHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIP 689

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D   +   +  + +     +  + ++ M+ AG  P+  T   L+S     ++I +   L+
Sbjct: 690 DEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 749

Query: 238 RTM 240
           + M
Sbjct: 750 QNM 752



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 58/122 (47%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            + G K D     +M+   GR  QF  + ++L  M +     +  TYN LI+ YGR  ++
Sbjct: 473 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 532

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            +   +F  +     KPD VT+ + +  +++       +++++ M   G  PD  T  V+
Sbjct: 533 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVI 592

Query: 221 IS 222
           I+
Sbjct: 593 IN 594


>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
           10D]
          Length = 805

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 93/191 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F +++  G+   +     LL A+++   V +      +M  +G++ D    N+++ 
Sbjct: 558 AESLFRQLRAEGLEYDLFICNALLGAFARAKMVERAFQAFEEMRSAGVRGDRITFNTLIT 617

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R  +F+K  +    M+K + +AD +TYN LI+   + G  E    LF  +    L+P
Sbjct: 618 AAARAREFDKAWKAFETMKKSNISADATTYNALIDACSKSGMTELAFALFNEMRQAHLQP 677

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            + T+ + + A ++ +  RR  ++   M   G YPD  T  +L++AC+  +  +   +LV
Sbjct: 678 TIFTFNALIGACTKLQDMRRATQVLMLMHGFGVYPDTFTLNILLTACARNEDFDYAISLV 737

Query: 238 RTMHKDMKTAL 248
           R    + +  L
Sbjct: 738 REFETNYRVRL 748



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 79/173 (45%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P + ++  +L   +K  +V+    V+++M K G++P+ F   S+++   R G  ++ E
Sbjct: 500 VQPDIVTYGTILDICAKKQDVSLAYAVLDRMRKRGMRPNNFCYASLIDACARAGLPDQAE 559

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            +   +       D+   N L+  + R   +E+    F+ + +  ++ D +T+ + + A 
Sbjct: 560 SLFRQLRAEGLEYDLFICNALLGAFARAKMVERAFQAFEEMRSAGVRGDRITFNTLITAA 619

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +R + + +  + FE M  +    D  T   LI ACS     E    L   M +
Sbjct: 620 ARAREFDKAWKAFETMKKSNISADATTYNALIDACSKSGMTELAFALFNEMRQ 672



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 1/169 (0%)

Query: 86  KTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
           + G +     ++ QM ++  ++PD     ++L++  +         VL  M K     + 
Sbjct: 480 RAGRIDAALDLLGQMEQNRNVQPDIVTYGTILDICAKKQDVSLAYAVLDRMRKRGMRPNN 539

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
             Y  LI+   R G  ++ E LF+ L A+ L+ D+    + L A++R K+  R  + FEE
Sbjct: 540 FCYASLIDACARAGLPDQAESLFRQLRAEGLEYDLFICNALLGAFARAKMVERAFQAFEE 599

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           M  AG   D  T   LI+A +   + ++      TM K   +A    +N
Sbjct: 600 MRSAGVRGDRITFNTLITAAARAREFDKAWKAFETMKKSNISADATTYN 648



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 8/161 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A   FE MK+  I+    ++  L+ A SK+G       + N+M ++ L+P  F  N+
Sbjct: 625 FDKAWKAFETMKKSNISADATTYNALIDACSKSGMTELAFALFNEMRQAHLQPTIFTFNA 684

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK- 173
           ++    +L    +  +VL  M       D  T NIL+    R    +    L +      
Sbjct: 685 LIGACTKLQDMRRATQVLMLMHGFGVYPDTFTLNILLTACARNEDFDYAISLVREFETNY 744

Query: 174 -----RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
                RL   +VT     A  S+ +   RCL + E  +  G
Sbjct: 745 RVRLDRLGSSIVTNLCIKACDSQSR--DRCLRLLEAAVLEG 783


>gi|2980784|emb|CAA18211.1| puative protein [Arabidopsis thaliana]
 gi|7269983|emb|CAB79800.1| puative protein [Arabidopsis thaliana]
          Length = 1075

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 77/137 (56%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +++  +  + M+  G + +++++  LL AY K   + K   ++ +M KS   PD +  N 
Sbjct: 920  YTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNI 979

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            M+N+YG  G  +++ +VL  +++     D+ +YN LI  YG GG +E+  GL + +  + 
Sbjct: 980  MINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRN 1039

Query: 175  LKPDVVTWTSRLAAYSR 191
            + PD VT+T+ + A  R
Sbjct: 1040 IIPDKVTYTNLVTALRR 1056



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 8/194 (4%)

Query: 43   TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            TPN   F  +  +Y     F   + +F   KR G+   + S+  ++ AY K  +      
Sbjct: 867  TPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVI-SYNTIIAAYGKNKDYTNMSS 925

Query: 96   VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
             I  M   G        N++L+ YG+  Q EK   +L  M+K +   D  TYNI+INIYG
Sbjct: 926  AIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYG 985

Query: 156  RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
              G+I+++  + + L    L PD+ ++ + + AY    +    + + +EM      PD  
Sbjct: 986  EQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKV 1045

Query: 216  TAKVLISACSSEDQ 229
            T   L++A    D+
Sbjct: 1046 TYTNLVTALRRNDE 1059



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 92/200 (46%), Gaps = 7/200 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F  M   G+ P + +  +L+  Y K  NV + E   + M K G+  ++   +SM+ 
Sbjct: 400 ASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCES-AYSSMIT 458

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y RL  ++K EEV+  M++      +  + +++N Y + G +E  E +  S+ A    P
Sbjct: 459 IYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSP 518

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++ + + +  Y +         +F  + + G  PD  + + +I      D  E+     
Sbjct: 519 NIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEE----A 574

Query: 238 RTMHKDMKTA--LPIYFNLY 255
           +  ++++K     P  FNL+
Sbjct: 575 KHYYQELKRCGYKPNSFNLF 594



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG--LKPDTFVINS 114
           +A   F  M++ GI     ++  ++T Y++     K E VI+ M +    LK + +++  
Sbjct: 434 EAEFAFSHMRKFGIV-CESAYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLV-- 490

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y + G+ E  E +L +ME   ++ +I  YN LI  YG+   +E  +GLF  L    
Sbjct: 491 MLNAYSQQGKMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIG 550

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L+PD  ++ S +  + R   Y      ++E+   G  P+
Sbjct: 551 LEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCGYKPN 589



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 1/182 (0%)

Query: 60   AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
              FEEM R G TP   +  +LL  Y K     K   +     + G+  D    N+++  Y
Sbjct: 856  GTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGV-VDVISYNTIIAAY 914

Query: 120  GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            G+   +  M   +  M+   ++  +  YN L++ YG+   +EK   + + +      PD 
Sbjct: 915  GKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDH 974

Query: 180  VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
             T+   +  Y  +       ++ +E+ ++G  PD  +   LI A      +E+   LV+ 
Sbjct: 975  YTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKE 1034

Query: 240  MH 241
            M 
Sbjct: 1035 MR 1036



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 111/261 (42%), Gaps = 45/261 (17%)

Query: 42  HTPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H  +  + I+++   FS+A  ++  +K  G+        +++  Y K G++ +   V+  
Sbjct: 730 HITSTMIDIYTVMGEFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEI 789

Query: 100 M-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           M  +  + PD ++   ML +Y +    +K++ +   + K     +   YN +IN   R  
Sbjct: 790 MDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARAL 849

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF-----EEMIDAGCYP- 212
            ++++ G F+ +      P+ VT+   L  Y + KL+++  E+F       ++D   Y  
Sbjct: 850 PLDELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNT 909

Query: 213 -----------------------DGGTAKV-----LISACSSEDQIEQVTTLVRTMHKDM 244
                                  DG +  +     L+ A   + Q+E+  ++++ M K  
Sbjct: 910 IIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKK-- 967

Query: 245 KTALP------IYFNLYGEKG 259
            T+ P      I  N+YGE+G
Sbjct: 968 STSGPDHYTYNIMINIYGEQG 988



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 83/182 (45%), Gaps = 1/182 (0%)

Query: 61   VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            ++  +++ GI    + +  ++   ++   + +  G   +M + G  P+T   N +L++YG
Sbjct: 822  LYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGFTPNTVTFNVLLDVYG 881

Query: 121  RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            +   F+K+ E L  + K     D+ +YN +I  YG+      M    +++        + 
Sbjct: 882  KAKLFKKVNE-LFLLAKRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLE 940

Query: 181  TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             + + L AY + K   +   I + M  +   PD  T  ++I+    +  I++V  +++ +
Sbjct: 941  AYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKEL 1000

Query: 241  HK 242
             +
Sbjct: 1001 KE 1002



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 71/156 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V + MK+  +   +++ +++L AYS+ G +   E ++  M  +G  P+    N+
Sbjct: 466 YDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYNT 525

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  YG++ + E  + +   +       D ++Y  +I  +GR    E+ +  +Q L    
Sbjct: 526 LITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCG 585

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
            KP+     + +   ++       ++  E+M   GC
Sbjct: 586 YKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGC 621


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 12/212 (5%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P++   + ++Y       DA   F+EM++    P+  S   L+TAY   G   +  GV  
Sbjct: 110 PHVLTSLLNLYARCGRLHDAQKAFDEMRQ---PPSTVSWTALITAYMDAGRGLEAIGVAR 166

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
               SG++PD+F    +L    R+      EEV TA EK   A ++      +++Y + G
Sbjct: 167 SAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCG 226

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            ++K  G+F  +  K    DVV W + +  Y+     R  LE+F  M   G  PD  T  
Sbjct: 227 EMDKARGVFDKMKNK----DVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVA 282

Query: 219 VLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
             +SAC+    ++    +V  +  D     P+
Sbjct: 283 GALSACTRLGALDLGRRVVGMLQWDEVLGNPV 314


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 102/209 (48%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  + +EM    + P + ++  L+  Y K   + +   + + + K GL P+    N+
Sbjct: 354 LNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNT 413

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ Y + G+ E+   +   M +  +  + STYN LI  + R G +E+++ L   +  + 
Sbjct: 414 LLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRG 473

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +K D VT+   ++A+  KK  ++   + +EM+D G  P   T  +L++    E  +    
Sbjct: 474 VKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAAL 533

Query: 235 TLVRTMHKDMKTALPIYFNL----YGEKG 259
            L + M K+ + A  + +N+    Y  KG
Sbjct: 534 NLRKQMEKEGRWANVVTYNVLIQGYCRKG 562



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+ +EM    ++P   +  +L+  + K  N++    V  +M   GLKP     NS++N
Sbjct: 287 ADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVN 346

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+  + + +L  M   +   ++ TYN LIN Y +   +E+   LF ++  + L P
Sbjct: 347 GLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTP 406

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+T+ + L  Y +         + + M++ G  P+  T   LI     E ++E+V  L+
Sbjct: 407 NVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLL 466

Query: 238 RTMHKDMKTALPIYFNL 254
             M      A  + +N+
Sbjct: 467 NEMQCRGVKADTVTYNI 483



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 3/218 (1%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +L   P L   +    F     V++EM R  I+P + +   ++    K G + K   V++
Sbjct: 195 VLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVD 254

Query: 99  QMHKSGLKPDTFVINSMLNLY---GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            M   G  P+    N++++ Y   GR+G+  K + +L  M +   + +  T+N+LI+ + 
Sbjct: 255 DMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFC 314

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   +     +F+ + ++ LKP VVT+ S +     +        + +EM+ +   P+  
Sbjct: 315 KDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVI 374

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           T   LI+    +  +E+   L   + K   T   I FN
Sbjct: 375 TYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFN 412



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 10/208 (4%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK--- 92
           +PNL  F   I         + A  V ++MK  G  P + ++  L+  Y K G V K   
Sbjct: 227 SPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYK 286

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            + ++ +M ++ + P++   N +++ + +        +V   M+       + TYN L+N
Sbjct: 287 ADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVN 346

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
                G + + + L   + +  LKP+V+T+ + +  Y +KKL     E+F+ +   G  P
Sbjct: 347 GLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTP 406

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +  T   L+       ++E+   L + M
Sbjct: 407 NVITFNTLLHGYCKFGKMEEAFLLQKVM 434



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F+ + + G+TP + +   LL  Y K G + +   +   M + G  P+    N 
Sbjct: 389 LEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNC 448

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R G+ E+++ +L  M+     AD  TYNILI+ +      +K   L   +  K 
Sbjct: 449 LIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKG 508

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKP  +T+   L  Y  +   R  L + ++M   G + +  T  VLI     + ++E   
Sbjct: 509 LKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDAN 568

Query: 235 TLVRTM 240
            L+  M
Sbjct: 569 GLLNEM 574



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 16/157 (10%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   +  EM+  G+     ++ +L++A+ +     K   +I++M   GLKP     N +L
Sbjct: 461 EVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILL 520

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y   G       +   MEK    A++ TYN+LI  Y R G +E   GL   +  K L 
Sbjct: 521 NGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLI 580

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           P+  T+                  I EEM++ G  PD
Sbjct: 581 PNRTTYEI----------------IKEEMMEKGFLPD 601



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 7/185 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+  F   ++         +A  + + M   G  P   ++  L+  + + G + + + 
Sbjct: 405 TPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKN 464

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++N+M   G+K DT   N +++ +    + +K   ++  M          TYNIL+N Y 
Sbjct: 465 LLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYC 524

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             G +     L + +  +    +VVT+   +  Y RK        +  EM++ G  P+  
Sbjct: 525 MEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRT 584

Query: 216 TAKVL 220
           T +++
Sbjct: 585 TYEII 589



 Score = 45.1 bits (105), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 48/108 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   G+ P+  ++ +LL  Y   GN+     +  QM K G   +    N ++ 
Sbjct: 497 AARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQ 556

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            Y R G+ E    +L  M +     + +TY I+       GF+  +EG
Sbjct: 557 GYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPDIEG 604


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 94/199 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   H V  +M   G TP ++ +  ++    K G++     ++N+M   GLKP+    N+
Sbjct: 315 FERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNT 374

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L       ++E+ EE+L  M       D  T+NIL++ + + G ++++  L + +    
Sbjct: 375 LLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG 434

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV+T+T+ +  + ++ L    + + + M   GC P+  +  +++    S ++     
Sbjct: 435 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAE 494

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M +      PI FN
Sbjct: 495 DLMSQMIQQGCPLNPITFN 513



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA AV +EM R G  P    + ++L A  + G       V+  +H  G   D    N 
Sbjct: 175 IADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNL 234

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN     G  ++   +L  +       D+ +YN ++    +G  + K  G  Q L  + 
Sbjct: 235 VLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVL----KGLCMAKRWGCVQELMEEM 290

Query: 175 LK----PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           ++    P++VT+ + ++   R  L+ R  E+  +M++ GC PD      +I     E  +
Sbjct: 291 VRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHL 350

Query: 231 EQVTTLVRTM 240
           E    ++  M
Sbjct: 351 EVAHEILNRM 360



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 79/184 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  ++   G  P + S+  +L            + ++ +M +    P+    N+++
Sbjct: 247 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 306

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G FE++ EVL  M +     DI  Y  +I+   + G +E    +   +P+  LK
Sbjct: 307 SYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLK 366

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VV + + L      + +    E+  EM D  C  D  T  +L+        +++V  L
Sbjct: 367 PNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIEL 426

Query: 237 VRTM 240
           +  M
Sbjct: 427 LEQM 430



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 4/183 (2%)

Query: 62  FEEMKRLG----ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            E  +RL     + P   ++  ++ A    G +A    V+++M + G  P   + + +L 
Sbjct: 143 LESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILE 202

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G F     VL  +     A D+   N+++N     G +++   L + LP+   +P
Sbjct: 203 AACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEP 262

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV++ + L      K +    E+ EEM+   C P+  T   LIS        E+V  ++
Sbjct: 263 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 322

Query: 238 RTM 240
             M
Sbjct: 323 AQM 325



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 85/181 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +M + G      +   L+    K G V +   ++ QM  +G  PD    ++++
Sbjct: 492 DAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 551

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +  G+ G+ ++  E+L  M     + +   Y+ + +   R G I K+  +F ++    ++
Sbjct: 552 DGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIR 611

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + +++  ++    R +E    M+ +GC P+  T  +LI   +SE  +++   +
Sbjct: 612 SDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEM 671

Query: 237 V 237
           +
Sbjct: 672 L 672



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/193 (18%), Positives = 84/193 (43%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M   G  P + ++  ++  + K G + +   ++  M   G KP+T     +L    
Sbjct: 426 LLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLC 485

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              ++   E++++ M +     +  T+N LIN   + G +E+   L + +      PD++
Sbjct: 486 SAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 545

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++++ +    +       LE+   M++ G  P+      + SA S E +I +V  +   +
Sbjct: 546 SYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNI 605

Query: 241 HKDMKTALPIYFN 253
                 +  + +N
Sbjct: 606 QDTTIRSDAVLYN 618



 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/152 (18%), Positives = 67/152 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M   G +P + S+  ++    K G   +   ++N M   G+ P+T + +S+ +
Sbjct: 528 AIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIAS 587

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G+  K+ ++   ++  +  +D   YN +I+   + G  E+       + +    P
Sbjct: 588 ALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVP 647

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +  T+T  +   + +   +   E+  E+   G
Sbjct: 648 NESTYTILIRGLASEGFVKEAQEMLTELCSKG 679



 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 55/117 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +   M   G++P    +  + +A S+ G + K   + + +  + ++ D  + N+++
Sbjct: 562 EALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVI 621

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +   + G+ E+  E L  M       + STY ILI      GF+++ + +   L +K
Sbjct: 622 SSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSK 678


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 96/191 (50%), Gaps = 8/191 (4%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +Y  DA   F    RL +   + +  +++T Y++T    K      QM + G+KP+ F +
Sbjct: 565 MYLEDADVAF---NRLSVRD-LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTL 620

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
              L+    L   E  +++ + + K  + +D+   + L+++Y + G +E+ E LF++L  
Sbjct: 621 AGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-- 678

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             ++ D + W + +  Y++     + L  F  M+D G  PDG T   ++SACS +  +E+
Sbjct: 679 --IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEE 736

Query: 233 VTTLVRTMHKD 243
                 +M++D
Sbjct: 737 GKEHFNSMYRD 747



 Score = 45.1 bits (105), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 4/156 (2%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + +D+  +F+EM+  GI P   +    L A S    +   + +  Q  K GL  D FV +
Sbjct: 193 FANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGS 252

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++LY + G+ E   ++   M + +   D+ T+N+L+N Y + G +  +  LF S+   
Sbjct: 253 ALVDLYAKCGEIELASKMFIGMPEQN---DV-TWNVLLNGYAQRGDVTGVLKLFCSMMEL 308

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +K +  T T+ L   +  K  ++   I   +I  G
Sbjct: 309 DVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG 344



 Score = 38.9 bits (89), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/153 (18%), Positives = 69/153 (45%), Gaps = 4/153 (2%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +LL  Y++ G+V     +   M +  +K + F + ++L         ++ + + + + K 
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC 343

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            Y  +      L+++Y + G      G+F+++     KPD+V W++ +    ++      
Sbjct: 344 GYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK----KPDIVVWSALITCLDQQGQSEES 399

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +++F  M      P+  T   L+SA ++   ++
Sbjct: 400 IKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432


>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 5/210 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVIN 113
           F     +F EM  LGI  +  ++  ++  Y K       E  + +M +SG   PD F +N
Sbjct: 215 FDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLN 274

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S +  YG  GQ EKME+     +      DI T+NILI  YG+    EKM  + + +  +
Sbjct: 275 SFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKR 334

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P +VT+   +  + R     +  E F +M   G  P+  T   L+SA S    +++V
Sbjct: 335 FYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKV 394

Query: 234 TTLVRTMHKDMKTALPIYFNL----YGEKG 259
            +++R +     T    +FN     YG+ G
Sbjct: 395 DSILRQIENSDVTLDTPFFNCVLSAYGQAG 424



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 84/160 (52%)

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
           AY  +G + K E   ++    G++PD    N ++  YG+   +EKM  V+  M+K  Y+ 
Sbjct: 279 AYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSP 338

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
            I T+NI+I ++GR G IEKME  F  +  + +KP+ +T+ S ++AYS+    ++   I 
Sbjct: 339 TIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSIL 398

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            ++ ++    D      ++SA      +E++  L   M +
Sbjct: 399 RQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKE 438



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 85/179 (47%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           ++E + +GI P +K+  +L+ +Y K     K   V+  M K    P     N ++ ++GR
Sbjct: 293 YDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGR 352

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G  EKMEE    M+      +  TY  L++ Y + G+++K++ + + +    +  D   
Sbjct: 353 VGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPF 412

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +   L+AY +     R  E+F  M +  C PD  T   +I A +++  IE    L   M
Sbjct: 413 FNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGMIEAAQNLEVNM 471



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 74/131 (56%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V E MK+   +PT+ +  +++  + + GN+ K E    +M   G+KP++    S+++ Y
Sbjct: 326 SVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAY 385

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G  +K++ +L  +E      D   +N +++ YG+ G +E+M  LF  +  ++ KPD 
Sbjct: 386 SKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDN 445

Query: 180 VTWTSRLAAYS 190
           +T+ + + AY+
Sbjct: 446 ITFATMIQAYN 456



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 2/202 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSML 116
           A  +FE M   G+ PT+  +  L++AY  +G + K    +  M   S  KPD +  + ++
Sbjct: 147 ASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILI 206

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME-GLFQSLPAKRL 175
                LG+F+ +E + T M          TYN +I+ YG+    E ME  L + + +   
Sbjct: 207 KCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTC 266

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+ T  S + AY       +  + ++E    G  PD  T  +LI +       E++ +
Sbjct: 267 LPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVS 326

Query: 236 LVRTMHKDMKTALPIYFNLYGE 257
           ++  M K   +   + FN+  E
Sbjct: 327 VMEFMKKRFYSPTIVTFNIVIE 348



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 2/164 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P  +++  LL    K     +   +   M   GL+P   V  ++++ YG  GQ +K    
Sbjct: 126 PRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCT 185

Query: 132 LTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +  M+  S    D+ TY+ILI      G  + +E +F  +    ++   VT+ + +  Y 
Sbjct: 186 VEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYG 245

Query: 191 RKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIEQV 233
           +  ++        EMI++G C PD  T    I A  +  QIE++
Sbjct: 246 KADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKM 289


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+ +EMK  GI P   +  +L+  +    NV+    V  +M++ G+KP+    NS++N
Sbjct: 199 ADAILKEMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLIN 258

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+  +   +   M       +I T+N L+N + +   +++   LF+ +P +R+ P
Sbjct: 259 GLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITP 318

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V T+   + AY + +       ++  M+  G YPD  T   LI     +  +E     V
Sbjct: 319 NVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRV 378

Query: 238 RTMH-KDMKTALPIY 251
             M  K +K  L  Y
Sbjct: 379 SEMDTKHLKADLITY 393



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 86/187 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  VF EM R G+ P + ++  L+      G V +   + +QM  S L+P+    N++
Sbjct: 232 SVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNAL 291

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LN + +    ++  E+   M K     +++TYNILI+ Y +   +E    L++ +  K +
Sbjct: 292 LNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGV 351

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+   +    RK           EM       D  T  +L+ +  ++ ++++   
Sbjct: 352 YPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNKGEMKKTLR 411

Query: 236 LVRTMHK 242
           L+  M K
Sbjct: 412 LLDEMCK 418



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ H   L  F  +     A  +FE+M +  ITP + ++ +L+ AY K  N+     +  
Sbjct: 285 IITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYR 344

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M   G+ PD    N ++    R G  E     ++ M+     AD+ TYNIL++     G
Sbjct: 345 IMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNKG 404

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
            ++K   L   +  K LKP  +T+ + +  YS++   R+
Sbjct: 405 EMKKTLRLLDEMCKKGLKPSQLTYNTMIDGYSKEGNLRQ 443


>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 91/180 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VFEEM   G+ PT K++ +LL A++ +G V + + V   M +  + PD +   +ML
Sbjct: 332 EALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTML 391

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y      E  E+    ++   +  +I TY  +I  Y +   +EKM  +++ +    +K
Sbjct: 392 SAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIK 451

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +    T+ + A  R K +   L  ++EM   G  PD     VL+S  S++D++++   L
Sbjct: 452 ANQTILTTIMDASGRCKDFGSALGWYKEMESCGVPPDQKAKNVLLSLYSTQDELDEAKEL 511



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 35/231 (15%)

Query: 46  LFVFIFSIYFSDAHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI----- 97
           L  F+    F +A  VFE +   K+  + P  K + +++  Y K GN  K   V      
Sbjct: 216 LKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKVFSSMVG 275

Query: 98  ---------------------------NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
                                      +QM +SG++PD      ++  YGR  + E+   
Sbjct: 276 KGVPQSTVTYNSLMSFETNYKEVSKIYDQMQRSGIQPDVVSYALLIKAYGRARREEEALS 335

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           V   M           YNIL++ +   G +E+ + +F+S+   R+ PD+ ++T+ L+AY 
Sbjct: 336 VFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYV 395

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
                    + F+ +   G  P+  T   +I   +  + +E++  +   M 
Sbjct: 396 NASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMR 446



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           ++L+TAY K GN    E V++ + K G  P+     +++  YGR G+    E +   M+ 
Sbjct: 143 LMLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQS 202

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR---LKPDVVTWTSRLAAYSRKKL 194
                   TY I++  +  G   ++ E +F++L  ++   LKPD   +   +  Y +   
Sbjct: 203 SGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGN 262

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           Y +  ++F  M+  G      T   L+S  ++  ++ ++
Sbjct: 263 YDKARKVFSSMVGKGVPQSTVTYNSLMSFETNYKEVSKI 301



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 52/116 (44%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  L  ++ +     A   F+ +K  G  P + ++  ++  Y+K  +V K   V  
Sbjct: 384 LWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYE 443

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           +M  SG+K +  ++ ++++  GR   F         ME      D    N+L+++Y
Sbjct: 444 KMRLSGIKANQTILTTIMDASGRCKDFGSALGWYKEMESCGVPPDQKAKNVLLSLY 499


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 96/191 (50%), Gaps = 8/191 (4%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +Y  DA   F    RL +   + +  +++T Y++T    K      QM + G+KP+ F +
Sbjct: 565 MYLEDADVAF---NRLSVRD-LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTL 620

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
              L+    L   E  +++ + + K  + +D+   + L+++Y + G +E+ E LF++L  
Sbjct: 621 AGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-- 678

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             ++ D + W + +  Y++     + L  F  M+D G  PDG T   ++SACS +  +E+
Sbjct: 679 --IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEE 736

Query: 233 VTTLVRTMHKD 243
                 +M++D
Sbjct: 737 GKEHFNSMYRD 747



 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 4/156 (2%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + +D+  +F+EM+  GI P   +    L A S    +   + +  Q  K GL  D FV +
Sbjct: 193 FANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGS 252

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++LY + G+ E   ++   M + +   D+ T+N+L+N Y + G +  +  LF S+   
Sbjct: 253 ALVDLYAKCGEIELASKMFIGMPEQN---DV-TWNVLLNGYAQRGDVTGVLKLFCSMMEL 308

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +K +  T T+ L   +  K  ++   I   +I  G
Sbjct: 309 DVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG 344



 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/153 (18%), Positives = 69/153 (45%), Gaps = 4/153 (2%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +LL  Y++ G+V     +   M +  +K + F + ++L         ++ + + + + K 
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC 343

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            Y  +      L+++Y + G      G+F+++     KPD+V W++ +    ++      
Sbjct: 344 GYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK----KPDIVVWSALITCLDQQGQSEES 399

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +++F  M      P+  T   L+SA ++   ++
Sbjct: 400 IKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432


>gi|294462101|gb|ADE76603.1| unknown [Picea sitchensis]
          Length = 290

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 81/171 (47%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P   S+ +L++ Y   G + + E +   M + G  PD  V N++L+ Y + G F + E
Sbjct: 85  LGPNATSYTILISGYITQGKLQEAEKLFRSMAEKGCIPDACVYNTLLDAYFKEGMFAEAE 144

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           ++L  M       D  TY +LIN + + G +E    +F ++    LKPDV  +       
Sbjct: 145 KLLEEMVTEHREPDSVTYTMLINEFTKQGKMEGALKIFANMIEAGLKPDVTVYNKWFGLL 204

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            ++  +    ++F+ M+D G  PD GT  +L      E + E+   L R +
Sbjct: 205 CKESKFDEAQKLFQRMVDGGQNPDVGTYDILTEGFGQEGRAEEAKKLFRDI 255



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 79/168 (47%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL 132
           T+ S+  ++  + K G + +    ++++ ++ L P+      +++ Y   G+ ++ E++ 
Sbjct: 53  TVMSYNAVMDGFCKAGQLQEALQYLDKLPENNLGPNATSYTILISGYITQGKLQEAEKLF 112

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
            +M +     D   YN L++ Y + G   + E L + +  +  +PD VT+T  +  ++++
Sbjct: 113 RSMAEKGCIPDACVYNTLLDAYFKEGMFAEAEKLLEEMVTEHREPDSVTYTMLINEFTKQ 172

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                 L+IF  MI+AG  PD             E + ++   L + M
Sbjct: 173 GKMEGALKIFANMIEAGLKPDVTVYNKWFGLLCKESKFDEAQKLFQRM 220



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++A  + EEM      P   ++ +L+  ++K G +     +   M ++GLKPD  V N 
Sbjct: 140 FAEAEKLLEEMVTEHREPDSVTYTMLINEFTKQGKMEGALKIFANMIEAGLKPDVTVYNK 199

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
              L  +  +F++ +++   M  G    D+ TY+IL   +G+ G  E+ + LF+ +  K
Sbjct: 200 WFGLLCKESKFDEAQKLFQRMVDGGQNPDVGTYDILTEGFGQEGRAEEAKKLFRDILEK 258



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 67/155 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F  M   G  P    +  LL AY K G  A+ E ++ +M     +PD+     
Sbjct: 105 LQEAEKLFRSMAEKGCIPDACVYNTLLDAYFKEGMFAEAEKLLEEMVTEHREPDSVTYTM 164

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + + G+ E   ++   M +     D++ YN    +  +    ++ + LFQ +    
Sbjct: 165 LINEFTKQGKMEGALKIFANMIEAGLKPDVTVYNKWFGLLCKESKFDEAQKLFQRMVDGG 224

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
             PDV T+      + ++       ++F ++++ G
Sbjct: 225 QNPDVGTYDILTEGFGQEGRAEEAKKLFRDILEKG 259


>gi|302775226|ref|XP_002971030.1| hypothetical protein SELMODRAFT_94889 [Selaginella moellendorffii]
 gi|300161012|gb|EFJ27628.1| hypothetical protein SELMODRAFT_94889 [Selaginella moellendorffii]
          Length = 846

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 6/185 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +FE M+  G+ P + +   ++TAY++ G+  +   +  +M   GL+PD F   
Sbjct: 152 HIEQAAEIFERMQLQGLDPDLIAWTAMMTAYNQLGHAREALLLFRKMDLQGLEPDRFAFV 211

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           + ++    +   E+   + + +   S   D    N L+N Y + G + +   LF S+  K
Sbjct: 212 AAIDACSSIPSLEQGTVLHSRLLASSVECDGVVGNALLNFYAKAGLVHESRSLFSSMKVK 271

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL--ISACSSEDQIE 231
               +VVTW++ +AAY++   +   +E+F EM+  G  P+  T  +L  + AC   D ++
Sbjct: 272 ----NVVTWSAIVAAYAQNGHHEPAVELFREMLLDGIAPNKVTIALLRIVEACDQPDALD 327

Query: 232 QVTTL 236
           Q   L
Sbjct: 328 QAREL 332



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A  V +EM R   T  +    ++L       N A    V   M   G KPD   + +
Sbjct: 467 LAGAAQVLDEMPR---TNVISWTSMILACEQNEDNEAAIH-VYRAMQLHGHKPDPVTMVT 522

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++     L   ++  E         +A      N L+ +YG  G ++  E +F+ L  + 
Sbjct: 523 VIKAAANLHDLKRGIEFHAQAAAFGFATSTVVGNALVTLYGTSGDLQAAENVFKELLQQS 582

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           ++ DVVTW S L+A+++  L  + L  F+ M+  G +PD  T   +++AC+ +
Sbjct: 583 VE-DVVTWNSMLSAWNQNGLPNQALRTFQRMLHHGRHPDKTTFVNILNACAGD 634



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 10/186 (5%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVF  + R  +     +  +L+ A++  G   +   +  +M   G++ D F  +++L
Sbjct: 48  DAIAVFHTVSRKNVF----TWTILIVAHTHNGLFFEAVELFREMDVHGVQSDEFTFSAIL 103

Query: 117 NLYGRLG-QFEKMEEVLTAM--EKG---SYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
                LG  F  + + + +   ++G   +    +     +I+ Y + G IE+   +F+ +
Sbjct: 104 EACSNLGLAFLSLGKTIHSRIHQQGLKLTSNPTVICSTAMIDAYAQNGHIEQAAEIFERM 163

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
             + L PD++ WT+ + AY++    R  L +F +M   G  PD       I ACSS   +
Sbjct: 164 QLQGLDPDLIAWTAMMTAYNQLGHAREALLLFRKMDLQGLEPDRFAFVAAIDACSSIPSL 223

Query: 231 EQVTTL 236
           EQ T L
Sbjct: 224 EQGTVL 229



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML L+G     +    V   M    Y  D    N+LI +YGR   +     +F ++  K 
Sbjct: 1   MLKLHGDAKNLDAGRAVHLQMITSGYHRDRYLCNLLIQMYGRCRSVHDAIAVFHTVSRK- 59

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
              +V TWT  + A++   L+   +E+F EM   G   D  T   ++ ACS+
Sbjct: 60  ---NVFTWTILIVAHTHNGLFFEAVELFREMDVHGVQSDEFTFSAILEACSN 108



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 12/175 (6%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM--HKSGLKPDTFVIN 113
           SDA  VF+EM+   IT    S   +L  YS      +       M     G+KPD     
Sbjct: 363 SDAKTVFDEMQHRNIT----SWNAMLVTYSLNQRSLEALRFFRTMLLEGEGVKPDAITFV 418

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKG--SYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           S  +  G +G   +  E+ + + +   S   D+   + LI +YG    +     +   +P
Sbjct: 419 SAADACGMMGDLSRAVEIHSRISQSWPSNQTDVVLGSALIKMYGNCRSLAGAAQVLDEMP 478

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
               + +V++WTS + A  + +     + ++  M   G  PD  T   +I A ++
Sbjct: 479 ----RTNVISWTSMILACEQNEDNEAAIHVYRAMQLHGHKPDPVTMVTVIKAAAN 529


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 96/199 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   H V  +M   G TP ++ +  ++    K G++     ++N+M   GLKP+    N+
Sbjct: 267 FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L       ++++ EE+L+ M +     D  T+NIL++ + + G ++++  L + + +  
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV+T+T+ +  + ++ L    + + + M   GC P+  +  +++    S  +     
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M +      P+ FN
Sbjct: 447 ELMSQMIQQGCPPNPVTFN 465



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 78/185 (42%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +  ++   G    + S+  +L            E ++++M +    P+    N++
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTL 257

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    R G FE++ EVL  M +     DI  Y  +I+   + G +E    +   +P+  L
Sbjct: 258 IGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+VV + + L      + ++   E+  EM    C  D  T  +L+        +++V  
Sbjct: 318 KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 236 LVRTM 240
           L+  M
Sbjct: 378 LLEQM 382



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 75/186 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  V +EM   G  P    + ++L A  ++G       V+  MH  G   DT   N 
Sbjct: 127 IADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNL 186

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN     G  ++   +L  +      ADI +YN ++           +E L   +    
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+ + +    R  L+ R  E+  +M + GC PD      +I     E  +E   
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 235 TLVRTM 240
            ++  M
Sbjct: 307 EILNRM 312



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/193 (18%), Positives = 84/193 (43%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M   G  P + ++  ++  + K G + +   ++  M   G KP+T     +L    
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G++   EE+++ M +     +  T+N LIN   + G +E+   L + +      PD++
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 497

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++++ +    +       LE+   M++ G  P+      +  A S E ++ +V  +   +
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNI 557

Query: 241 HKDMKTALPIYFN 253
                 +  + +N
Sbjct: 558 KDTTIRSDAVLYN 570



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 69/173 (39%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P   +   ++      G +A    V+++M   G  P   + + +L    R G F    
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            VL AM       D    N+++N     G +++  GL + L     + D+V++ + L   
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
              K +    E+ +EM+   C P+  T   LI         E+V  ++  M +
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 82/203 (40%), Gaps = 12/203 (5%)

Query: 27  PYPSHF-MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           P P  F  LINFL  +                A  + ++M   G +P + S+  ++    
Sbjct: 459 PNPVTFNTLINFLCKKG-----------LVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K G   +   ++N M   G+ P+T + +S+     R G+  K+ ++   ++  +  +D  
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            YN +I+   +    ++    F  + +    P+  T+T  +   + + L +   E+  E+
Sbjct: 568 LYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627

Query: 206 IDAGCYPDGGTAKVLISACSSED 228
              G           IS C+ E+
Sbjct: 628 CSRGALRKHLMRHFGISNCTQEN 650


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 14/211 (6%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL  F   +Y         +A  V  +MK  G+ P +     LL+ Y+  G +A    +
Sbjct: 234 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 293

Query: 97  INQMHKSGLKPD----TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           +N M K G +P+    T +I ++     R+ +  +   V   ME+    ADI TY  LI+
Sbjct: 294 MNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMR---VFVEMERYGCEADIVTYTALIS 350

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            + + G I+K   +   +  K + P  VT+   + A+ +K+ +  CLE+ E+M   GC+P
Sbjct: 351 GFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHP 410

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           D     V+I       ++++   L   M  +
Sbjct: 411 DLLIYNVVIRLACKLGEVKEAVRLWNEMEAN 441



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 87/179 (48%), Gaps = 2/179 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VF EM+R G    + ++  L++ + K G + K   V++ M K G+ P       
Sbjct: 323 MDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQ 382

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + +  QFE+  E++  M++     D+  YN++I +  + G +++   L+  + A  
Sbjct: 383 IMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANG 442

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY--PDGGTAKVLISACSSEDQIE 231
           L P V T+   +  ++ +         F+EM+  G +  P  GT K L++    +D++E
Sbjct: 443 LSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLE 501



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 91/187 (48%), Gaps = 2/187 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VFE+M R    P ++    LL  + + G + + + V+ QM ++GL+PD  V  ++L
Sbjct: 220 EASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLL 278

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRL 175
           + Y   G+     +++  M K  +  +++ Y +LI    R    +++   +F  +     
Sbjct: 279 SGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGC 338

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D+VT+T+ ++ + +  +  +   + ++M   G  P   T   ++ A   ++Q E+   
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLE 398

Query: 236 LVRTMHK 242
           L+  M +
Sbjct: 399 LIEKMKR 405



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 90/192 (46%), Gaps = 7/192 (3%)

Query: 55  FSDAHAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           F     + EEM++     I P +   ++L+  ++    V K   V+++M K GL+PD +V
Sbjct: 147 FGAVWGLIEEMRKTNPELIEPEL--FVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYV 204

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
              +L+   + G  ++  +V   M +  +  ++  +  L+  + R G + + + +   + 
Sbjct: 205 FGCLLDALCKNGSVKEASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMK 263

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQI 230
              L+PD+V +T+ L+ Y+         ++  +M   G  P+     VLI A C +E ++
Sbjct: 264 EAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRM 323

Query: 231 EQVTTLVRTMHK 242
           ++   +   M +
Sbjct: 324 DEAMRVFVEMER 335


>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
          Length = 492

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F    ++  +M R GI P   ++  L+ AY K G  A+ E  + +M     KPD + +NS
Sbjct: 228 FEKVKSLLADMARAGIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNS 287

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L  +G  GQ E ME      +      +I TYNIL++ YG+    EKM  + + +    
Sbjct: 288 TLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYY 347

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
               +VT+   + A+ R     +   IF  M      P+  T   ++ A     +++++ 
Sbjct: 348 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIK 407

Query: 235 TLVRTMHKDMKTALPIYFN----LYGEKG 259
           T +R +     T   ++FN     YG  G
Sbjct: 408 TALRIIENSDITLDIVFFNCLVDAYGRVG 436



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 27  PYPSHFMLINFLLLQHTPNL--FVFIFSIY-----FSDAHAVFEEMKRL-GITPTMKSHM 78
           P  +H +    +     PNL  +  + S Y     F +A  + + MK   G  P ++++ 
Sbjct: 157 PEKAHQLFQAMIDEGCAPNLQSYTALVSTYSRSGRFREAFDLLDRMKDTPGCQPDVQTYS 216

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ +     +  K + ++  M ++G+ P+T   N++++ YG+ G+F +ME  L  M   
Sbjct: 217 ILIKSCLHAYDFEKVKSLLADMARAGIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQ 276

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +   D+ T N  +  +G  G IE ME  ++   A  + P++ T+   L +Y + K+Y + 
Sbjct: 277 NCKPDVWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKM 336

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             + E M          T  V+I A      +EQ+  + R M  +
Sbjct: 337 GAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSE 381



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 68/125 (54%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AV E M++   + T+ ++ +++ A+ + G++ + E +   M    +KP+   + S++  Y
Sbjct: 338 AVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAY 397

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR G+ +K++  L  +E      DI  +N L++ YGR G + +M  +   +   R KPD 
Sbjct: 398 GRAGEVKKIKTALRIIENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDK 457

Query: 180 VTWTS 184
           VT T+
Sbjct: 458 VTCTT 462



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            + +E+ +  GI P +K++ +LL +Y K     K   V+  M K          N +++ 
Sbjct: 302 ESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDA 361

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           +GR G  E+ME +   M+      +  T   ++  YGR G ++K++   + +    +  D
Sbjct: 362 FGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSDITLD 421

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +V +   + AY R        +I + M +  C PD  T   +I
Sbjct: 422 IVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCTTMI 464



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 2/188 (1%)

Query: 50  IFSIYFSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           + ++ +  A  VFE M+ ++   P +  ++ L+T   K     K   +   M   G  P+
Sbjct: 116 VAALRWDSALKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPN 175

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                ++++ Y R G+F +  ++L  M +      D+ TY+ILI         EK++ L 
Sbjct: 176 LQSYTALVSTYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLL 235

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             +    + P+ VT+ + + AY +   +        +M+   C PD  T    + A  S 
Sbjct: 236 ADMARAGIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSS 295

Query: 228 DQIEQVTT 235
            QIE + +
Sbjct: 296 GQIETMES 303



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y   I  Y  LI + G+    EK   LFQ++  +   P++ ++T+ ++ YSR   +R   
Sbjct: 137 YKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTALVSTYSRSGRFREAF 196

Query: 200 EIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           ++ + M D  GC PD  T  +LI +C      E+V +L+  M +
Sbjct: 197 DLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMAR 240


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 8/185 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM   G+     +   +++ YS+ G       +  QM  SG+ PD F + S+L+   
Sbjct: 210 LFDEMPVKGLI----TWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCA 265

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            LG  +  +EV   +E   +A ++   N LI++Y R G + K   +F  +P K L    V
Sbjct: 266 HLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSL----V 321

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +WT+ +  Y    +    L +F++MI  G  PDG    +++SACS     ++   L R M
Sbjct: 322 SWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAM 381

Query: 241 HKDMK 245
            ++ K
Sbjct: 382 KREYK 386



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 27/198 (13%)

Query: 41  QHTPNLFVFIFSIY-----FSDAHAVFEE---MKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           +  P +   + S+Y       DA  VFEE     +LG+      +  L++ Y+    V+ 
Sbjct: 82  EAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVC-----YNALISGYTANSKVSD 136

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNL-----YGRLGQFEKMEEVLTAMEKGSYAADISTY 147
              +  +M ++G+  D+  I  ++ L     Y  LG+    E V     KG   ++++  
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECV-----KGGTYSEVAVL 191

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           N  I +Y + G +E    LF  +P K L    +TW + ++ YS+  L    LE+FE+M  
Sbjct: 192 NSFITMYMKCGSVESGRRLFDEMPVKGL----ITWNAVISGYSQNGLAYDVLELFEQMKS 247

Query: 208 AGCYPDGGTAKVLISACS 225
           +G  PD  T   ++S+C+
Sbjct: 248 SGVCPDPFTLVSVLSSCA 265



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +FE+MK  G+ P   + + +L++ +  G     + V   +  +G  P+ F+ N+++
Sbjct: 237 DVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALI 296

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++Y R G   K   V   M   S    + ++  +I  YG  G  E    LF  +  + ++
Sbjct: 297 SMYARCGNLAKARAVFDIMPVKS----LVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIR 352

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           PD   +   L+A S   L  + LE+F  M
Sbjct: 353 PDGAVFVMVLSACSHSGLTDKGLELFRAM 381



 Score = 40.8 bits (94), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 43  TPNLFV--FIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+F+   + S+Y      + A AVF+ M       ++ S   ++  Y   G       
Sbjct: 286 APNVFLSNALISMYARCGNLAKARAVFDIMP----VKSLVSWTAMIGCYGMHGMGETGLT 341

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST--YNILINI 153
           + + M K G++PD  V   +L+     G  +K  E+  AM++  Y  +     Y+ L+++
Sbjct: 342 LFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKR-EYKLEPGPEHYSCLVDL 400

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            GR G +++      S+P   ++PD   W + L A
Sbjct: 401 LGRAGRLDEAMEFIDSMP---VEPDGAVWGALLGA 432


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 91/184 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VF EM R GI P + +   L+    K GN+ +  G++ +M + GL+ +     +++
Sbjct: 280 EALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALI 339

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G  +     +  M +      +  YN LIN Y   G +++   L + + AK +K
Sbjct: 340 DGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVK 399

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+++ L+AY +        ++ ++M++ G  PD  T   LI     E ++     L
Sbjct: 400 PDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVL 459

Query: 237 VRTM 240
            + M
Sbjct: 460 FKNM 463



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 85/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+ M   G+ P + ++ +L+ A    G+  +   V+  M  +G  P+    N+++ 
Sbjct: 141 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVA 200

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G+ ++ E ++  M +G    ++ T+N ++N   + G +E    +F  +  + L P
Sbjct: 201 AFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAP 260

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++ + +  Y +       L +F EM   G  PD  T   LI        +E+   LV
Sbjct: 261 DGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLV 320

Query: 238 RTMHK 242
           R M +
Sbjct: 321 REMRE 325



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +V  +M+  G  P   ++  L+ A+ + G V + E +++ M + GLKP+    NS++
Sbjct: 175 EALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVV 234

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   + G+ E   +V   M K   A D  +YN L+  Y + G   +   +F  +  K + 
Sbjct: 235 NGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIM 294

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+TS +    +     R + +  EM + G   +  T   LI     +  ++     
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLA 354

Query: 237 VRTMHK 242
           VR M +
Sbjct: 355 VREMRQ 360



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 88/184 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA     EM++  I P++  +  L+  Y   G + +   ++ +M   G+KPD    +
Sbjct: 347 FLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYS 406

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L+ Y + G      ++   M +     D  TY+ LI +      +     LF+++ + 
Sbjct: 407 TILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISL 466

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L+PD VT+TS +  + ++    R L + +EM+ AG  PD  T  VLI+  S   + ++ 
Sbjct: 467 GLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEA 526

Query: 234 TTLV 237
             L+
Sbjct: 527 QRLL 530



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 81/184 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + M+  G+ P + +   ++    K G +     V ++M K GL PD    N+++ 
Sbjct: 211 AERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVG 270

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++G   +   V   M +     D+ T+  LI++  + G +E+  GL + +  + L+ 
Sbjct: 271 GYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQM 330

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +T+T+ +  + +K      L    EM      P       LI+      ++++   LV
Sbjct: 331 NEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELV 390

Query: 238 RTMH 241
           R M 
Sbjct: 391 REME 394



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/239 (17%), Positives = 91/239 (38%), Gaps = 50/239 (20%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DAH +F+ M  LG+ P   ++  L+  + K GNV +   + ++M K+G+ PD    + 
Sbjct: 453 LGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSV 512

Query: 115 MLNLYGRLGQFEKMEEVL------------------------------TAMEKG------ 138
           ++N   +  + ++ + +L                               A+ KG      
Sbjct: 513 LINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGL 572

Query: 139 --------------SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                         ++  D S Y++LI+ + R G + K     + +      P+  +  S
Sbjct: 573 MNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTIS 632

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +     K +     ++ +++++     D   +K LI     E  ++ V  ++  M +D
Sbjct: 633 LIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARD 691


>gi|302794444|ref|XP_002978986.1| hypothetical protein SELMODRAFT_109727 [Selaginella moellendorffii]
 gi|300153304|gb|EFJ19943.1| hypothetical protein SELMODRAFT_109727 [Selaginella moellendorffii]
          Length = 670

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 21/236 (8%)

Query: 12  CVAQRAPHSWNFNYLPYPSHF---MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRL 68
           C+ QRA       +    S +   M  + +L  H  NL+    S+   +A +VF+   RL
Sbjct: 153 CLKQRAIDPGRMIHAHIESFYGRNMDRDNVLGSHLVNLYRRCGSL--EEAKSVFD---RL 207

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P       ++ +Y+++G  ++   +  +M + G+ PD     S+L++   +    + 
Sbjct: 208 G-DPDASCWSAMIASYAQSGYGSQALELFQRMDRRGIVPDRLAFLSILSVCSSIDLGRRF 266

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR---LKPDVVTWTSR 185
              +  M++     + S    LI +YGR GF+E+ +G+F  L  ++      DV  WTS 
Sbjct: 267 HSRIAGMDR-----ENSIATALIQMYGRLGFVEESKGVFDRLEKEQGDGDDRDVAVWTSL 321

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + AY+R    R  LEIF  M+D  C PD  +    + ACSS   +    TL R +H
Sbjct: 322 IQAYARNNRPREALEIFAAMMDHRCEPDAASFASAMDACSSLGDL----TLARKIH 373



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 7/164 (4%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ AY++ G+      +  QM   G++PD   +   L+    + +FE   +VL     G+
Sbjct: 430 MIGAYAQNGHPGAGLELYQQMKSQGIQPDRATLVIALDAAAMIEEFELGRDVLI---DGA 486

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D      +I +  R G   + + +F S+P    + D + W++ + AY++       L
Sbjct: 487 LEYDERVATAVIGMLARSGKTIRAKRVFDSIP----RRDGICWSAMVTAYAQNGHSILAL 542

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           E+F EM+  G   D      +++ACS      +  +   +M  D
Sbjct: 543 ELFSEMVVEGFVADKAAIVSILAACSQSGDFRRGRSYFASMQAD 586



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 40/178 (22%)

Query: 55  FSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           F++A    E M +L  +TP   S  +LL +   + ++A    +   +    +  D F+ N
Sbjct: 22  FTEAIEALESMIQLKSVTPDRMSFSVLLDSCCGSEHLAHGVKIHGLIFLCAIDSDLFLDN 81

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++ +YGR G  E+ ++V  AME                                     
Sbjct: 82  ALITMYGRCGSVERAQKVFAAME------------------------------------- 104

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             + D+V+WT+ +AA +    +   + ++  MI  G  PD  T   L++ C  +  I+
Sbjct: 105 --ERDLVSWTAMIAANAANGHFLASVLLYLRMIQEGVLPDRITYATLLAGCLKQRAID 160



 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 48/252 (19%), Positives = 88/252 (34%), Gaps = 72/252 (28%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA---------------------------- 83
           S Y S A  +F+ M R GI P   + + +L+                             
Sbjct: 225 SGYGSQALELFQRMDRRGIVPDRLAFLSILSVCSSIDLGRRFHSRIAGMDRENSIATALI 284

Query: 84  --YSKTGNVAKCEGVINQMHK---SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM--- 135
             Y + G V + +GV +++ K    G   D  V  S++  Y R  +  +  E+  AM   
Sbjct: 285 QMYGRLGFVEESKGVFDRLEKEQGDGDDRDVAVWTSLIQAYARNNRPREALEIFAAMMDH 344

Query: 136 ----EKGSYAA--------------------------------DISTYNILINIYGRGGF 159
               +  S+A+                                 I   N  I +YG+   
Sbjct: 345 RCEPDAASFASAMDACSSLGDLTLARKIHAQIISLSSNPREEIQILATNAAIAMYGKCKS 404

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E+ +  F      +   +  TW + + AY++       LE++++M   G  PD  T  +
Sbjct: 405 LEEAKTAFDRAIHAKNTVNTATWNAMIGAYAQNGHPGAGLELYQQMKSQGIQPDRATLVI 464

Query: 220 LISACSSEDQIE 231
            + A +  ++ E
Sbjct: 465 ALDAAAMIEEFE 476


>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 683

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  AVFE M   G+ P + S+  L+ AY+  G       V+  + ++G+ PD      +L
Sbjct: 206 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLL 265

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YGR  Q  K +EV   M K     ++ TYN LI+ YG  GF+ +   +F+ +    +K
Sbjct: 266 NSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIK 325

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VV+  + LAA SR K       +       G   +       I +  +  ++E+   L
Sbjct: 326 PNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIAL 385

Query: 237 VRTMHKDMKTALPIYFNL 254
            ++M K    A  + F +
Sbjct: 386 YQSMRKKKVKADSVTFTI 403



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 4/199 (2%)

Query: 43  TPNLFVFIFSIYFSDAHAV--FEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           T N+ ++  S     + A+  F  M  KR    P + +   ++  YS  G +  C  V  
Sbjct: 153 TFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFE 212

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M   GLKP+    N+++  Y   G       VL  +++     D+ +Y  L+N YGR  
Sbjct: 213 AMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSR 272

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              K + +F  +  +R KP+VVT+ + + AY         +EIF +M   G  P+  +  
Sbjct: 273 QPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVC 332

Query: 219 VLISACSSEDQIEQVTTLV 237
            L++ACS   +   V T++
Sbjct: 333 TLLAACSRSKKKVNVDTVL 351



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 78/171 (45%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   V +  G+  +M K   KPD    ++++N +GR GQ+     ++  M + 
Sbjct: 16  MMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRA 75

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           + A   STYN LIN  G  G   +   + + +    + PD+VT    L+AY   + Y + 
Sbjct: 76  AIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKA 135

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           L  FE M  A   PD  T  ++I   S   Q  Q   L  +M +      P
Sbjct: 136 LSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRP 186



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 100/211 (47%), Gaps = 6/211 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  V ++M   G+ P + +H ++L+AY      +K       M  + ++PDT   N 
Sbjct: 97  WREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNI 156

Query: 115 MLNLYGRLGQFEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++    +LGQ  +  ++  +M  ++     D+ T+  ++++Y   G IE    +F+++ A
Sbjct: 157 IIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVA 216

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + LKP++V++ + + AY+   +    L +  ++   G  PD  +   L+++     Q  +
Sbjct: 217 EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGK 276

Query: 233 VTTLVRTMHKDMKTALPIYFN----LYGEKG 259
              +   M K+ +    + +N     YG  G
Sbjct: 277 AKEVFLMMRKERRKPNVVTYNALIDAYGSNG 307



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 36/238 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++A  +F +M++ GI P + S   LL A S++      + V++     G+  +T   N
Sbjct: 308 FLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYN 367

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN--------------------- 152
           S +  Y    + EK   +  +M K    AD  T+ ILI+                     
Sbjct: 368 SAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDL 427

Query: 153 --------------IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                          Y + G + + E +F  +     +PDV+ +TS L AY+  + + + 
Sbjct: 428 SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKA 487

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNLY 255
            E+F EM   G  PD      L+ A +   Q   V  L+  M  K++     ++F ++
Sbjct: 488 CELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIF 545



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  +     +S A + FE MK   + P   +  +++   SK G  ++   + N
Sbjct: 116 LVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFN 175

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   ++  +PD     S+++LY   G+ E    V  AM       +I +YN L+  Y  
Sbjct: 176 SMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAV 235

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       +   +    + PDVV++T  L +Y R +   +  E+F  M      P+  T
Sbjct: 236 HGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVT 295

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   + +   + R M +D
Sbjct: 296 YNALIDAYGSNGFLAEAVEIFRQMEQD 322



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +F EM++    P  +++  L+ A+ + G       +++ M ++ + P     N
Sbjct: 26  WVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN 85

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N  G  G + +  EV   M       D+ T+NI+++ Y  G    K    F+ +   
Sbjct: 86  NLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGA 145

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIE 231
           +++PD  T+   +   S+     + L++F  M +  A C PD  T   ++   S + +IE
Sbjct: 146 KVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIE 205

Query: 232 QVTTLVRTM-HKDMKTALPIY------FNLYGEKGVARSNLG 266
               +   M  + +K  +  Y      + ++G  G A S LG
Sbjct: 206 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLG 247



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M++    P + ++  L+ AY   G +A+   +  QM + G+KP+   + ++L 
Sbjct: 277 AKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLA 336

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R  +   ++ VL+A +      + + YN  I  Y     +EK   L+QS+  K++K 
Sbjct: 337 ACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKA 396

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+T  ++   R   Y   +   +EM D            ++ A S + Q+ +  ++ 
Sbjct: 397 DSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIF 456

Query: 238 RTM 240
             M
Sbjct: 457 NQM 459



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 50/102 (49%)

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +Y A    YN++I ++ R  ++++  GLF  +     KPD  T+ + + A+ R   +R  
Sbjct: 6   NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWA 65

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + + ++M+ A   P   T   LI+AC S     +   + + M
Sbjct: 66  MNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKM 107



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 57/130 (43%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           + N M+ L+ R    ++   +   M+K S   D  TY+ LIN +GR G       L   +
Sbjct: 13  IYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDM 72

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
               + P   T+ + + A      +R  LE+ ++M D G  PD  T  +++SA  S  Q 
Sbjct: 73  LRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQY 132

Query: 231 EQVTTLVRTM 240
            +  +    M
Sbjct: 133 SKALSYFELM 142


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 8/167 (4%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M  LG+ P   +   LL + +K+    + + +   + K G +PD +V  S++++Y + G+
Sbjct: 57  MISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGR 116

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E   +V    ++ S+  D+ +Y  LI  Y   G I   + +F  +P K    DVV+W +
Sbjct: 117 LEDAHKVF---DRSSHR-DVVSYTALITGYASSGNIRSAQEMFDEIPVK----DVVSWNA 168

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            ++ Y+    Y+  LE+F+EM+     PD GT   ++SAC+    +E
Sbjct: 169 MISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVE 215



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 80/146 (54%), Gaps = 4/146 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++ Y++TG+  +   +  +M K+ ++PD   + ++L+   +    E   +V + ++   
Sbjct: 169 MISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHG 228

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           + +++   N LI++Y + G +E   GLF+ L  K    DVV+W + +  Y+   LY+  L
Sbjct: 229 FGSNLKIVNALIDLYSKCGQVETACGLFEGLSCK----DVVSWNTLIGGYTHMNLYKEAL 284

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACS 225
            +F+EM+ +G  P+  T   ++ AC+
Sbjct: 285 LLFQEMLRSGESPNDVTIVSILPACA 310



 Score = 44.7 bits (104), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH VF  M    +  ++ S   ++  ++  G       + ++M K+G++PD      +L+
Sbjct: 355 AHQVFNSM----LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLS 410

Query: 118 LYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                G+ +    +  +M +       +  Y  +I++ G  G  ++ + + +++P   ++
Sbjct: 411 ACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMP---ME 467

Query: 177 PDVVTWTSRLAAYSR 191
           PD V W S L A  R
Sbjct: 468 PDGVIWCSLLKACRR 482



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG--SYAADISTYNILINI 153
           +  +M +SG  P+   I S+L     LG  +    +   ++K         S    LI++
Sbjct: 286 LFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDM 345

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           Y + G IE    +F S+  K L     +W + +  ++         ++F  M   G  PD
Sbjct: 346 YAKCGDIEAAHQVFNSMLHKSLS----SWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPD 401

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             T   L+SACS   +++    + ++M +D
Sbjct: 402 DITFVGLLSACSHSGKLDLGRHIFKSMTQD 431


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 6/202 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F++M  +G+ P   ++  L+  Y   G++ +     ++M K G+ P     N 
Sbjct: 313 LEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNL 372

Query: 115 MLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +++   + GR+G+ + M   +  M K     D  TYNILIN Y R G  +K   L   + 
Sbjct: 373 LVHALFMEGRMGEADDM---IKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML 429

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +K ++P  VT+TS +   SR+   +   ++FE+++D G  PD      ++    +   +E
Sbjct: 430 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 489

Query: 232 QVTTLVRTMHKDMKTALPIYFN 253
           +   L++ M +       + FN
Sbjct: 490 RAFMLLKEMDRKSVPPDEVTFN 511



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 87/197 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ EM RL I+ T+ +  +++    K G + K    I  M   G KP+    N++++
Sbjct: 211 AWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIH 270

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E    +L AM       D  TY  LI+   + G +E+  GLF  +    L P
Sbjct: 271 GYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVP 330

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + VT+ + +  Y  K    R     +EM+  G  P   T  +L+ A   E ++ +   ++
Sbjct: 331 NAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMI 390

Query: 238 RTMHKDMKTALPIYFNL 254
           + M K       I +N+
Sbjct: 391 KEMRKKGIIPDAITYNI 407



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +  +EM + GI P++ ++ LL+ A    G + + + +I +M K G+ PD    N ++N
Sbjct: 351 AFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILIN 410

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  +K  ++   M          TY  LI +  R   +++ + LF+ +  + + P
Sbjct: 411 GYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSP 470

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV+ + + +  +       R   + +EM      PD  T   L+     E ++E+   L+
Sbjct: 471 DVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLL 530

Query: 238 RTMHKDMKTALPIYFNL----YGEKG 259
             M +       I +N     YG +G
Sbjct: 531 DEMKRRGIKPDHISYNTLISGYGRRG 556



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 93/208 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + M+  GI P   ++  L++   K G + +  G+ ++M + GL P+    N++++
Sbjct: 281 ARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 340

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E+       M K      +STYN+L++     G + + + + + +  K + P
Sbjct: 341 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 400

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+   +  YSR    ++  ++  EM+  G  P   T   LI   S  +++++   L 
Sbjct: 401 DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 460

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSNL 265
             +     +   I FN   +   A  N+
Sbjct: 461 EKILDQGVSPDVIMFNAMVDGHCANGNV 488



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM   GI PT  ++  L+   S+   + + + +  ++   G+ PD  + N+M++
Sbjct: 421 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 480

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  E+   +L  M++ S   D  T+N L+    R G +E+   L   +  + +KP
Sbjct: 481 GHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKP 540

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +++ + ++ Y R+   +    + +EM+  G  P   T   LI       + +    L+
Sbjct: 541 DHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELL 600

Query: 238 RTM 240
           + M
Sbjct: 601 KEM 603



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 80/167 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + +EM++ GI P   ++ +L+  YS+ GN  K   + N+M   G++P      S++
Sbjct: 385 EADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 444

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +  R  + ++ +++   +     + D+  +N +++ +   G +E+   L + +  K + 
Sbjct: 445 YVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVP 504

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD VT+ + +    R+        + +EM   G  PD  +   LIS 
Sbjct: 505 PDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 551



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 88/191 (46%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + +T  ++V        +A  +FE++   G++P +     ++  +   GNV +   ++ +
Sbjct: 438 VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKE 497

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  + PD    N+++    R G+ E+   +L  M++     D  +YN LI+ YGR G 
Sbjct: 498 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGD 557

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I+    +   + +    P ++T+ + +    + +      E+ +EM++ G  PD  T   
Sbjct: 558 IKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLS 617

Query: 220 LISACSSEDQI 230
           LI    + D +
Sbjct: 618 LIEGMGNVDTL 628



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 83/177 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A   F  MK  GI P +++   +L+ + K   +     +  +M +  +    +  N M
Sbjct: 174 DEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIM 233

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N+  + G+ +K  E +  ME   +  ++ +YN +I+ Y   G IE    +  ++  K +
Sbjct: 234 VNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGI 293

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +PD  T+ S ++   ++        +F++M++ G  P+  T   LI    ++  +E+
Sbjct: 294 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLER 350



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 65/141 (46%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M + G+ P     N ML+L+ +L + E    +   M +   ++ + T+NI++N+  + G 
Sbjct: 183 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGK 242

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           ++K       +     KP+VV++ + +  YS +        I + M   G  PD  T   
Sbjct: 243 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 302

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LIS    E ++E+ + L   M
Sbjct: 303 LISGMCKEGRLEEASGLFDKM 323


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA  V E MK  G  P + ++  L+  +   G V K   ++N+M   G+ PD    N 
Sbjct: 198 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNL 257

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G  E    +L  ME     AD  TYN LIN   + G  ++   LF SL  + 
Sbjct: 258 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 317

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-ACSSEDQIEQV 233
           +KP+ VT+ S +    +        +  E+M+ AGC PD  T    I   C  +   E +
Sbjct: 318 IKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGL 377

Query: 234 TTLVRTMHKDMK 245
           + +   + KD+K
Sbjct: 378 SFIGEMLQKDVK 389



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 71/181 (39%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +   MK LG  P+ +++  ++          + E ++ +M + GL P      +++N Y 
Sbjct: 134 MLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYC 193

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+      VL  M+      ++ TYN L+  +   G + K   L   +    + PD V
Sbjct: 194 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAV 253

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +              +   M   G   D  T   LI+A   + + +Q  +L  ++
Sbjct: 254 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 313

Query: 241 H 241
            
Sbjct: 314 E 314



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 18/209 (8%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +   M+  G+     ++  L+ A  K G   +   + + +   G+KP+    N
Sbjct: 267 HIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFN 326

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE---KMEGLFQSL 170
           S++N   + G+ +   + L  M       D  TY+          FIE   KM+G  + L
Sbjct: 327 SLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYS---------SFIEHLCKMKGSQEGL 377

Query: 171 P------AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
                   K +KP  V +T  +    +++ Y      + EM+ +GC PD  T    + A 
Sbjct: 378 SFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAY 437

Query: 225 SSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
             E ++ +   ++  M K+  T   + +N
Sbjct: 438 CIEGRLNEAENVLMEMSKNGVTVDTMAYN 466



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 4/189 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EM +    P M  +  L+    K G   +   ++ +M + G +P T    +
Sbjct: 97  IDEAVELFGEMDQ----PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAA 152

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++      + ++ EE+L  M +   A  + T   +IN Y + G +     + + +  + 
Sbjct: 153 VVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 212

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+V T+ + +  +  +    + + +  +M   G  PD  T  +LI     +  IE   
Sbjct: 213 CKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAF 272

Query: 235 TLVRTMHKD 243
            L+R M  D
Sbjct: 273 RLLRLMEGD 281



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 18/180 (10%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM   G  P + ++   + AY   G + + E V+ +M K+G+  DT   N++++ +  +G
Sbjct: 417 EMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIG 476

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           Q +    +L  M   +   +  TY IL+                + L   RL  DV+  T
Sbjct: 477 QTDHAVSILKQMTSVASVPNQFTYFILL----------------RHLVRMRLVEDVLPLT 520

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
              A   +         +F+ M      P+ GT   ++   S + + E+ T+LV  M +D
Sbjct: 521 P--AGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKED 578



 Score = 40.8 bits (94), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 4/133 (3%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ +  +  ++A     ++ M +SG +PD +  NS++  Y R  Q +   ++   M    
Sbjct: 17  VIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRG 76

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +A D+ +Y  LI  +   G I++   LF  +     +PD+  + + +    +       L
Sbjct: 77  FAQDVVSYAALIEGFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKAGRGEEGL 132

Query: 200 EIFEEMIDAGCYP 212
            +   M + G  P
Sbjct: 133 LMLRRMKELGWRP 145


>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
 gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  AVFE M   G+ P + S+  L+ AY+  G       V+  + ++G+ PD      +L
Sbjct: 338 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLL 397

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YGR  Q  K +EV   M K     ++ TYN LI+ YG  GF+ +   +F+ +    +K
Sbjct: 398 NSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIK 457

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VV+  + LAA SR K       +       G   +       I +  +  ++E+   L
Sbjct: 458 PNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIAL 517

Query: 237 VRTMHKDMKTALPIYFNL 254
            ++M K    A  + F +
Sbjct: 518 YQSMRKKKVKADSVTFTI 535



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 4/199 (2%)

Query: 43  TPNLFVFIFSIYFSDAHAV--FEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           T N+ ++  S     + A+  F  M  KR    P + +   ++  YS  G +  C  V  
Sbjct: 285 TFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFE 344

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M   GLKP+    N+++  Y   G       VL  +++     D+ +Y  L+N YGR  
Sbjct: 345 AMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSR 404

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              K + +F  +  +R KP+VVT+ + + AY         +EIF +M   G  P+  +  
Sbjct: 405 QPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVC 464

Query: 219 VLISACSSEDQIEQVTTLV 237
            L++ACS   +   V T++
Sbjct: 465 TLLAACSRSKKKVNVDTVL 483



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 78/171 (45%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   V +  G+  +M K   KPD    ++++N +GR GQ+     ++  M + 
Sbjct: 148 MMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRA 207

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           + A   STYN LIN  G  G   +   + + +    + PD+VT    L+AY   + Y + 
Sbjct: 208 AIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKA 267

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           L  FE M  A   PD  T  ++I   S   Q  Q   L  +M +      P
Sbjct: 268 LSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRP 318



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 100/211 (47%), Gaps = 6/211 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  V ++M   G+ P + +H ++L+AY      +K       M  + ++PDT   N 
Sbjct: 229 WREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNI 288

Query: 115 MLNLYGRLGQFEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++    +LGQ  +  ++  +M  ++     D+ T+  ++++Y   G IE    +F+++ A
Sbjct: 289 IIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVA 348

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + LKP++V++ + + AY+   +    L +  ++   G  PD  +   L+++     Q  +
Sbjct: 349 EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGK 408

Query: 233 VTTLVRTMHKDMKTALPIYFN----LYGEKG 259
              +   M K+ +    + +N     YG  G
Sbjct: 409 AKEVFLMMRKERRKPNVVTYNALIDAYGSNG 439



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 36/238 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++A  +F +M++ GI P + S   LL A S++      + V++     G+  +T   N
Sbjct: 440 FLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYN 499

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN--------------------- 152
           S +  Y    + EK   +  +M K    AD  T+ ILI+                     
Sbjct: 500 SAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDL 559

Query: 153 --------------IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                          Y + G + + E +F  +     +PDV+ +TS L AY+  + + + 
Sbjct: 560 SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKA 619

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNLY 255
            E+F EM   G  PD      L+ A +   Q   V  L+  M  K++     ++F ++
Sbjct: 620 CELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIF 677



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  +     +S A + FE MK   + P   +  +++   SK G  ++   + N
Sbjct: 248 LVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFN 307

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   ++  +PD     S+++LY   G+ E    V  AM       +I +YN L+  Y  
Sbjct: 308 SMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAV 367

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       +   +    + PDVV++T  L +Y R +   +  E+F  M      P+  T
Sbjct: 368 HGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVT 427

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   + +   + R M +D
Sbjct: 428 YNALIDAYGSNGFLAEAVEIFRQMEQD 454



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +F EM++    P  +++  L+ A+ + G       +++ M ++ + P     N
Sbjct: 158 WVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN 217

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N  G  G + +  EV   M       D+ T+NI+++ Y  G    K    F+ +   
Sbjct: 218 NLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGA 277

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIE 231
           +++PD  T+   +   S+     + L++F  M +  A C PD  T   ++   S + +IE
Sbjct: 278 KVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIE 337

Query: 232 QVTTLVRTM-HKDMKTALPIY------FNLYGEKGVARSNLGQYIGN 271
               +   M  + +K  +  Y      + ++G  G A S LG    N
Sbjct: 338 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQN 384



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M++    P + ++  L+ AY   G +A+   +  QM + G+KP+   + ++L 
Sbjct: 409 AKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLA 468

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R  +   ++ VL+A +      + + YN  I  Y     +EK   L+QS+  K++K 
Sbjct: 469 ACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKA 528

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+T  ++   R   Y   +   +EM D            ++ A S + Q+ +  ++ 
Sbjct: 529 DSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIF 588

Query: 238 RTM 240
             M
Sbjct: 589 NQM 591



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 1/167 (0%)

Query: 75  KSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
           K+  +L+   S+ G +  C  V   M  +        + N M+ L+ R    ++   +  
Sbjct: 108 KNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFF 167

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            M+K S   D  TY+ LIN +GR G       L   +    + P   T+ + + A     
Sbjct: 168 EMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSG 227

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +R  LE+ ++M D G  PD  T  +++SA  S  Q  +  +    M
Sbjct: 228 NWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELM 274


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 1/192 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  V ++M   GI P + +   L+ +  K G +     V + M   G K D F    
Sbjct: 302 WKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKI 361

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y   G    + E+   M     A D   +N+LI  Y + G +++   +F  +  + 
Sbjct: 362 MLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQG 421

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQV 233
           ++PDVVT+++ +AA  R       +E F +MID G  P   T   LI   C+  D ++  
Sbjct: 422 VEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAK 481

Query: 234 TTLVRTMHKDMK 245
             +++ M+K M+
Sbjct: 482 DLVLQMMNKGMR 493



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM + GI+P + ++  ++ A  K   + K E ++ QM   G+ PD +  NS++  Y 
Sbjct: 238 LFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYS 297

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             GQ+++   V   M       D+ T N L+    + G I+    +F S+  K  K D+ 
Sbjct: 298 STGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIF 357

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++   L  Y+ K       E+F  M+  G  PD     VLI A +    +++ T +   M
Sbjct: 358 SYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEM 417

Query: 241 HK 242
            +
Sbjct: 418 RE 419



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+  G+ P + ++  ++ A  + G +       NQM   G+ P     + ++ 
Sbjct: 410 ATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQ 469

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G   K ++++  M       DI  +N +IN   + G +   + +F    +  L P
Sbjct: 470 GFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHP 529

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+ + + +  Y         L +F+ M+ AG  P+      L++      +I++  +L 
Sbjct: 530 NVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLF 589

Query: 238 R-TMHKDMKTALPIY 251
           R  +HK +K +  +Y
Sbjct: 590 REILHKGIKPSTTLY 604



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 73/157 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F +M   G+ P++ ++  L+  +   G++ K + ++ QM   G++PD    N +
Sbjct: 443 DDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFI 502

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +LG+    + +           ++  YN L++ Y   G +E    +F  + +  +
Sbjct: 503 INNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGI 562

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +P+VV + + +  Y +       L +F E++  G  P
Sbjct: 563 QPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKP 599



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 80/172 (46%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P   ++  ++  + K G+V K   + N+M + G+ PD    N ++N   +    +K E +
Sbjct: 214 PNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAI 273

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           L  M       D  TYN LI  Y   G  ++   + + + ++ + PDVVT  S +A+  +
Sbjct: 274 LRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCK 333

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
               +   ++F+ M   G   D  + K++++  +++  +  +T L   M  D
Sbjct: 334 HGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSD 385



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 42/250 (16%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF+ M   GI P +  +  L+  Y K G + +   +  ++   G+KP T + N +L
Sbjct: 549 NALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIIL 608

Query: 117 NLYGRLG-------QFEKMEEVLTAMEKGSYA---------------------------- 141
           +   + G       +F +M E   AM++ +Y+                            
Sbjct: 609 HGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVK 668

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            DI+T NI+I    +   +E+ + LF S+    L P VVT++  +    ++ L     ++
Sbjct: 669 IDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDM 728

Query: 202 FEEMIDAGC-YPDGGTAKVLISACSSEDQIEQVTTLV-----RTMHKDMKTALPIYFNLY 255
           F  M +AGC  P+      ++     + +I +  T +     R+   D  T   +  +L+
Sbjct: 729 FSSMENAGCEQPNSQLLNHVVRELLEKREIVRAGTYLSKIDERSFSLDHSTT-TLLIDLF 787

Query: 256 GEKGVARSNL 265
             KG  R ++
Sbjct: 788 SSKGTCREHI 797



 Score = 44.7 bits (104), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 42/225 (18%)

Query: 58  AHAVFEEMKRLG----ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           A A+F  + R      ++PT+ ++ +L+   ++            Q+ K+GL  DT +I+
Sbjct: 88  AVALFNRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMIS 147

Query: 114 SMLN--------------LYGRLGQF----------------------EKMEEVLTAMEK 137
           ++L               L  R+                          + +E+L  M +
Sbjct: 148 NLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAE 207

Query: 138 GSYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
           G      +   YN +I+ + + G + K   LF  +  + + PD+ T+   + A  + +  
Sbjct: 208 GGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAM 267

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +   I  +M+D G  PD  T   LI   SS  Q ++   + + M
Sbjct: 268 DKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKM 312


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 5/170 (2%)

Query: 58  AHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +FE M + LGI P   S + +L A +  G  ++ + V     +SGL  D FV N+++
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVV 292

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++Y + G  E+  +V   M+      D+ ++N ++  Y + G  +   GLF+ +  ++++
Sbjct: 293 DMYAKCGMMEEANKVFERMK----VKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 348

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
            +VVTW++ +A Y+++ L    L++F +M+  G  P+  T   L+S C+S
Sbjct: 349 LNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCAS 398



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 9/195 (4%)

Query: 38  LLLQHTPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           LL+Q  P+    I S+Y  F+        ++RL   P+  +         ++ ++   E 
Sbjct: 71  LLVQGLPHDPTHIISMYLTFNSPAKALSVLRRL--HPSSHTVFWWNQLIRRSVHLGFLED 128

Query: 96  VIN---QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           V+    +M + G +PD +    +L   G +  F     V   +    +  ++   N L++
Sbjct: 129 VLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVS 188

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCY 211
           +YGR G  E    +F  +  +R   D+V+W S +AAY +     R +++FE M  D G  
Sbjct: 189 MYGRCGAWENARQVFDEM-RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIR 247

Query: 212 PDGGTAKVLISACSS 226
           PD  +   ++ AC+S
Sbjct: 248 PDAVSLVNVLPACAS 262



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 5/138 (3%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY-AADISTYNILINIYGRGGFIEKMEG 165
           P+ F I+  L    RLG      ++   + +  + +A +   N LI++Y + G ++    
Sbjct: 496 PNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARV 555

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +F ++  +    + V+WTS +  Y         L+IF EM      PDG T  V++ ACS
Sbjct: 556 VFDNMHQR----NGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACS 611

Query: 226 SEDQIEQVTTLVRTMHKD 243
               ++Q       M+KD
Sbjct: 612 HSGMVDQGINYFNGMNKD 629



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F DA  +FE+++   I   + +   ++  Y++ G   +   V  QM   G +P+   + S
Sbjct: 332 FDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVS 391

Query: 115 MLN--------LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           +L+        L+G+      ++ +L  +++     D+   N LI++Y +    +    +
Sbjct: 392 LLSGCASAGTLLHGKETHCHAIKWILN-LDENDPGDDLMVINALIDMYSKCKSPKAARAM 450

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI--DAGCYPDGGTAKVLISAC 224
           F  +P K     VVTWT  +   ++       LE+F +M+  D    P+  T    + AC
Sbjct: 451 FDLIPPK--DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMAC 508

Query: 225 S 225
           +
Sbjct: 509 A 509


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 75/159 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  VF+EM+R  I P + +   L+ +  K G + +   V + M   G  PD F    
Sbjct: 307 WKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTI 366

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN Y   G    M ++   M     A  I T+N+LI  Y   G ++K   +F  +    
Sbjct: 367 MLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHG 426

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +KP VVT+ + +AA  R       +E F +MID G  PD
Sbjct: 427 VKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 465



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 87/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM + GI P + ++  ++ A  K   + K E  + QM   G+ PD +  N+++ 
Sbjct: 240 ACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIY 299

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ+++   V   M + S   D+   N L+    + G I++   +F ++  K   P
Sbjct: 300 GYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNP 359

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++T  L  Y+ K       ++F+ M+  G  P   T  VLI A ++   +++   + 
Sbjct: 360 DVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIF 419

Query: 238 RTMH 241
             M 
Sbjct: 420 NEMR 423



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 4/184 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   +M   G+ P   ++  L+  YS TG   +   V  +M +  + PD   +N+++ 
Sbjct: 275 AEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMG 334

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  +V   M       D+ +Y I++N Y   G +  M  LF  +    + P
Sbjct: 335 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 394

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
            + T+   + AY+   +  + + IF EM D G  P   T   +I+A       +D +E+ 
Sbjct: 395 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 454

Query: 234 TTLV 237
             ++
Sbjct: 455 NQMI 458



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+  G+ P + ++M ++ A  + G +       NQM   G+ PD +  + ++ 
Sbjct: 415 AMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQ 474

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G   K +E+++ +       DI  +  +IN   + G +   + +F       L P
Sbjct: 475 GFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHP 534

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V +   +  Y       + L +F+ M+ AG  P+      L++      +I++  +L 
Sbjct: 535 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 594

Query: 238 RTM-HKDMKTALPIY 251
           R M  K +K +  +Y
Sbjct: 595 REMLQKGIKPSTILY 609



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 74/157 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F +M   G+ P   ++  L+  +   G++ K + +I+++  +G++ D     S+
Sbjct: 448 DDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSI 507

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +LG+    + +           D   YN+L++ Y   G +EK   +F ++ +  +
Sbjct: 508 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGI 567

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +P+VV + + +  Y +       L +F EM+  G  P
Sbjct: 568 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 82/184 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M   GI P +  +  L+  Y K G + +   +  +M + G+KP T + N +++
Sbjct: 555 ALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIID 614

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+    +     M +   A +  TY+I++    +    ++   LF+ L A  +K 
Sbjct: 615 GLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI 674

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++T  + +A   + +      ++F  +  +G  P   T  ++I+    E  +E+   + 
Sbjct: 675 DIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMF 734

Query: 238 RTMH 241
            +M 
Sbjct: 735 SSMQ 738



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 83/184 (45%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           +P + ++  ++  + K G+V K   +  +M + G+ PD    +S+++   +    +K E 
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
            L  M       D  TYN LI  Y   G  ++   +F+ +  + + PDVV   + + +  
Sbjct: 278 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLC 337

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
           +    +   ++F+ M   G  PD  +  ++++  +++  +  +T L   M  D    +  
Sbjct: 338 KYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVIC 397

Query: 251 YFNL 254
            FN+
Sbjct: 398 TFNV 401



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 40/218 (18%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----------------------- 106
           ++PT  ++ +L+   ++            Q+ ++GL+                       
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 107 -------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY--AADISTYNILI 151
                        PD F  N +L      G+  + +++L  M +G    + D+  YN +I
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVI 228

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           + + + G + K   LF+ +  + + PD+VT++S + A  + +   +      +M++ G  
Sbjct: 229 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 288

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           PD  T   LI   SS  Q ++   + + M +  ++ LP
Sbjct: 289 PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR--QSILP 324



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 67/158 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +F+ M   GI P + +  +L+ AY+  G + K   + N+M   G+KP      +++
Sbjct: 379 DMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVI 438

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R+G+ +   E    M       D   Y+ LI  +   G + K + L   +    ++
Sbjct: 439 AALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMR 498

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            D+V + S +    +         IF+  ++ G +PD 
Sbjct: 499 LDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536



 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F EM   GI     ++ ++L    K     +   +  ++    +K D   +N+M+ 
Sbjct: 625 AKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIA 684

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + E+ +++  ++ +        TY+I+I    + G +E+ E +F S+     +P
Sbjct: 685 GMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 744

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           D     SRL  +  ++L ++      E++ AG Y
Sbjct: 745 D-----SRLLNHVVRELLKK-----NEIVRAGAY 768


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 4/200 (2%)

Query: 42  HTPNLFVFIFS--IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           HT N+F+  +       +AH   +EMK  G  P + S+  L+  Y + GN ++   ++++
Sbjct: 213 HTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDE 272

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G   +     S++   G+  +FE+  +V   M       D   +N LI+  GR G 
Sbjct: 273 MQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGR 332

Query: 160 IEKMEGLFQ-SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTA 217
           ++    +F+  +P   + P+  T+ S ++ +      +R LEI +EM ++ GC PD  T 
Sbjct: 333 LDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTY 392

Query: 218 KVLISACSSEDQIEQVTTLV 237
             LI +C    +I+ V + +
Sbjct: 393 HPLIKSCFRSGKIDGVLSEI 412



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 80/165 (48%), Gaps = 1/165 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+ +  + DA  +F++++ LG+    +S  LLL    K   V +   +  ++ K  + P+
Sbjct: 153 FVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLDTLCKEKFVQQAREIFLEL-KQHIAPN 211

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N  ++ + ++ + ++    +  M+   +   + +Y+ LI  Y + G   ++  L  
Sbjct: 212 AHTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLD 271

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            + A+    +V+T+TS + A  + K +   L++ E M  +GC PD
Sbjct: 272 EMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPD 316



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 4/192 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN-QMHKSGLKPDTFVIN 113
           F +A  V E M+  G  P       L+    + G +     V   +M K+G+ P+T   N
Sbjct: 298 FEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYN 357

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEK-GSYAADISTYNILINIYGRGGFIEKM--EGLFQSL 170
           SM++++    Q ++  E+L  ME  G    D  TY+ LI    R G I+ +  E L   +
Sbjct: 358 SMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMI 417

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
             + L  D+ T+T  +    R+        +FEEMID    P   T ++L+     ++  
Sbjct: 418 NKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLLDEVKQKNMY 477

Query: 231 EQVTTLVRTMHK 242
           +    +   M K
Sbjct: 478 QAAEKIEDLMKK 489



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/193 (17%), Positives = 81/193 (41%), Gaps = 2/193 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM+  G+   M +    +  +   G       + + +   GL+ +T  +N +L+   
Sbjct: 131 LLEEMREGGLV-NMNTVAKAMRRFVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLDTLC 189

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +    ++  E+   + K   A +  T+NI I+ + +   +++     Q +      P V+
Sbjct: 190 KEKFVQQAREIFLEL-KQHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVI 248

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++++ +  Y ++  + R  E+ +EM   GC  +  T   ++ A     + E+   +   M
Sbjct: 249 SYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERM 308

Query: 241 HKDMKTALPIYFN 253
                    ++FN
Sbjct: 309 RSSGCRPDTLFFN 321


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 60/292 (20%)

Query: 12  CVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSD---AHA----VFEE 64
           C   RAP        P+ +H +  + L     PN+FVF   + F      HA    ++E+
Sbjct: 43  CTRLRAP--------PHYTHLLFNSTL----NPNVFVFTSMLRFYSHLQDHAKVVLMYEQ 90

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  G+ P    + +L+ + + TG +    G    + K G   D FV N+++++Y RLG 
Sbjct: 91  MQGCGVRPDAFVYPILIKS-AGTGGI----GFHAHVLKLGHGSDAFVRNAVIDMYARLGP 145

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL--------- 175
                +V    E   Y   ++ +N +++ Y +     + + LF  +P + +         
Sbjct: 146 IGHARKVFD--EIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTG 203

Query: 176 ------------------KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
                             +  VV+W + L+ Y++  L    L +F+EM++AG  PD  T 
Sbjct: 204 YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTW 263

Query: 218 KVLISACSSEDQIEQVTTLVRTMHKD-------MKTALPIYFNLYGEKGVAR 262
             +ISACSS        +LVRT+H+        ++TAL   +  +G+   AR
Sbjct: 264 VTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSAR 315



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 40/183 (21%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM   GI P   + + +++A S  G+      ++  +H+  ++ + FV  ++L
Sbjct: 243 EALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALL 302

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++Y + G  +   +                                   LF ++P +   
Sbjct: 303 DMYAKFGDLDSARK-----------------------------------LFNTMPGR--- 324

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTT 235
            +VVTW S +A Y++       +E+F+EMI A    PD  T   +ISAC     +E    
Sbjct: 325 -NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNW 383

Query: 236 LVR 238
           +VR
Sbjct: 384 VVR 386



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 80  LLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++  Y++ G  A    +  +M     L PD   + S+++  G LG  E    V+  + + 
Sbjct: 332 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN 391

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                IS +N +I +Y R G +E  + +FQ +  +    DVV++ + ++ ++        
Sbjct: 392 QIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR----DVVSYNTLISGFAAHGHGVEA 447

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + +   M + G  PD  T   +++ACS    +E+
Sbjct: 448 INLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEE 481



 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 9/150 (6%)

Query: 61  VFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           +F+EM   K+L  TP   + + +++A    G +     V+  + ++ +K      N+M+ 
Sbjct: 348 LFKEMITAKKL--TPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 405

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y R G  E  + V   M       D+ +YN LI+ +   G   +   L  ++    ++P
Sbjct: 406 MYSRCGSMEDAKRVFQEMA----TRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP 461

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           D VT+   L A S   L     ++FE + D
Sbjct: 462 DRVTFIGVLTACSHAGLLEEGRKVFESIKD 491


>gi|168063169|ref|XP_001783546.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664933|gb|EDQ51635.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 324

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 39/209 (18%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  G+ P + ++  L+ +  +    +K   V   M K G KP+ FV NS++N+   +G 
Sbjct: 1   MREFGVAPDLYTYRALIDSCGRCNESSKAAVVFETMLKDGFKPNVFVYNSLMNV--SVGD 58

Query: 125 FEKMEEVLTAMEKGS---------------YAA----------------------DISTY 147
            ++++     M++G+               YAA                      D+ +Y
Sbjct: 59  LDEVQRYYQHMQQGAGITGNLASFNILLKAYAACGRADLAADLYFRIQQTGELNLDVVSY 118

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           N +IN++GR    EK   +   +    + P+VVTWTS + A +   L  R  + F+EM+ 
Sbjct: 119 NAVINVFGRAKMWEKALRVKADIIEAGVTPNVVTWTSIIEACATAGLVERVFQEFDEMLS 178

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           AGC P+      L+ AC    Q E+   L
Sbjct: 179 AGCCPNVDCYNALLQACVMAGQNERAFQL 207



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 30/207 (14%)

Query: 35  INFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           +N  ++ +   + VF  +  +  A  V  ++   G+TP + +   ++ A +  G V +  
Sbjct: 111 LNLDVVSYNAVINVFGRAKMWEKALRVKADIIEAGVTPNVVTWTSIIEACATAGLVERVF 170

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM-------------------------- 128
              ++M  +G  P+    N++L      GQ E+                           
Sbjct: 171 QEFDEMLSAGCCPNVDCYNALLQACVMAGQNERAFQLFQEWKQTGQIHIFPRPSPSWNGY 230

Query: 129 --EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             EE   ++       ++ TYN ++   G     E++  L   + A  L PDV +W+  L
Sbjct: 231 IDEENWDSLRLSRCKPNLLTYNWMMKACGAAP--ERIRSLMLEMQAFNLIPDVTSWSILL 288

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            AY        C++ F+EM  A   PD
Sbjct: 289 GAYGSNGDLEGCMDTFKEMRRARFKPD 315



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+E K+ G     + H+    + S  G +   E   + +  S  KP+    N M+ 
Sbjct: 204 AFQLFQEWKQTG-----QIHIFPRPSPSWNGYID--EENWDSLRLSRCKPNLLTYNWMMK 256

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G     E++  ++  M+  +   D+++++IL+  YG  G +E     F+ +   R KP
Sbjct: 257 ACG--AAPERIRSLMLEMQAFNLIPDVTSWSILLGAYGSNGDLEGCMDTFKEMRRARFKP 314

Query: 178 DVVTWTS 184
           DVV +T+
Sbjct: 315 DVVAYTT 321


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 96/199 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   H V  +M   G TP ++ +  ++    K G++     ++N+M   GLKP+    N+
Sbjct: 267 FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L       ++++ EE+L+ M +     D  T+NIL++ + + G ++++  L + + +  
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV+T+T+ +  + ++ L    + + + M   GC P+  +  +++    S  +     
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M +      P+ FN
Sbjct: 447 ELMSQMIQQGCPPNPVTFN 465



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 78/185 (42%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +  ++   G    + S+  +L            E ++++M +    P+    N++
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTL 257

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    R G FE++ EVL  M +     DI  Y  +I+   + G +E    +   +P+  L
Sbjct: 258 IGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+VV + + L      + ++   E+  EM    C  D  T  +L+        +++V  
Sbjct: 318 KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 236 LVRTM 240
           L+  M
Sbjct: 378 LLEQM 382



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 75/186 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  V +EM   G  P    + ++L A  ++G       V+  MH  G   DT   N 
Sbjct: 127 IADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNL 186

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN     G  ++   +L  +      ADI +YN ++           +E L   +    
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+ + +    R  L+ R  E+  +M + GC PD      +I     E  +E   
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 235 TLVRTM 240
            ++  M
Sbjct: 307 EILNRM 312



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 79/176 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M   G  P + ++  ++  + K G + +   ++  M   G KP+T     +L    
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G++   EE+++ M +     +  T+N LIN   + G +E+   L + +      PD++
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 497

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           ++++ +    +       LE+   M++ G  P+      +  A S E ++ +V  +
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 69/173 (39%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P   +   ++      G +A    V+++M   G  P   + + +L    R G F    
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            VL AM       D    N+++N     G +++  GL + L     + D+V++ + L   
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
              K +    E+ +EM+   C P+  T   LI         E+V  ++  M +
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 76/184 (41%), Gaps = 12/184 (6%)

Query: 27  PYPSHF-MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           P P  F  LINFL  +                A  + ++M   G +P + S+  ++    
Sbjct: 459 PNPVTFNTLINFLCKKG-----------LVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K G   +   ++N M   G+ P+T + +S+     R G+  K+ ++   ++  +  +D  
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            YN +I+   +    ++    F  + +    P+  T+T  +   + + L +   E+  E+
Sbjct: 568 LYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627

Query: 206 IDAG 209
              G
Sbjct: 628 CSRG 631


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 96/199 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   H V  +M   G TP ++ +  ++    K G++     ++N+M   GLKP+    N+
Sbjct: 267 FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L       ++++ EE+L+ M +     D  T+NIL++ + + G ++++  L + + +  
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV+T+T+ +  + ++ L    + + + M   GC P+  +  +++    S  +     
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M +      P+ FN
Sbjct: 447 ELMSQMIQQGCPPNPVTFN 465



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 78/185 (42%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +  ++   G    + S+  +L            E ++++M +    P+    N++
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTL 257

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    R G FE++ EVL  M +     DI  Y  +I+   + G +E    +   +P+  L
Sbjct: 258 IGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+VV + + L      + ++   E+  EM    C  D  T  +L+        +++V  
Sbjct: 318 KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 236 LVRTM 240
           L+  M
Sbjct: 378 LLEQM 382



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 75/186 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  V +EM   G  P    + ++L A  ++G       V+  MH  G   DT   N 
Sbjct: 127 IADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNL 186

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN     G  ++   +L  +      ADI +YN ++           +E L   +    
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+ + +    R  L+ R  E+  +M + GC PD      +I     E  +E   
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 235 TLVRTM 240
            ++  M
Sbjct: 307 EILNRM 312



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 79/176 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M   G  P + ++  ++  + K G + +   ++  M   G KP+T     +L    
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G++   EE+++ M +     +  T+N LIN   + G +E+   L + +      PD++
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 497

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           ++++ +    +       LE+   M++ G  P+      +  A S E ++ +V  +
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 69/173 (39%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P   +   ++      G +A    V+++M   G  P   + + +L    R G F    
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            VL AM       D    N+++N     G +++  GL + L     + D+V++ + L   
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
              K +    E+ +EM+   C P+  T   LI         E+V  ++  M +
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 76/184 (41%), Gaps = 12/184 (6%)

Query: 27  PYPSHF-MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           P P  F  LINFL  +                A  + ++M   G +P + S+  ++    
Sbjct: 459 PNPVTFNTLINFLCKKG-----------LVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K G   +   ++N M   G+ P+T + +S+     R G+  K+ ++   ++  +  +D  
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            YN +I+   +    ++    F  + +    P+  T+T  +   + + L +   E+  E+
Sbjct: 568 LYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627

Query: 206 IDAG 209
              G
Sbjct: 628 CSRG 631


>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 528

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 87/161 (54%), Gaps = 1/161 (0%)

Query: 62  FEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           FE+MK +    P + ++ +L  A+++   V +   +   + +S +  D +  N +++ YG
Sbjct: 189 FEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYG 248

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  ++ME +L  M+      DI ++N+LI+ YG+    +KME +F+SL   + +P + 
Sbjct: 249 KNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLP 308

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           T+ S +  Y + +L  +  E+F +M D G  P   T + LI
Sbjct: 309 TFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLI 349



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 44  PNLFVF-IFSIYFSDAHAV------FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  + I +  F+ A  V      F+++    ++  + ++  ++ AY K GN+ + E +
Sbjct: 200 PNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGKNGNIKEMELM 259

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M  + +KPD    N +++ YG+   F+KME+V  ++ +      + T+N +I  YG+
Sbjct: 260 LARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGK 319

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
               EK E +F+ +      P  VT  S +  Y       +  EIF+ M+++G
Sbjct: 320 ARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSG 372



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 66/159 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     VF+ + R    PT+ +   ++T Y K     K E V  +M   G  P      S
Sbjct: 288 FDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCES 347

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +YG      K  E+   M        +ST N ++++Y   G   + + LF+S    R
Sbjct: 348 LIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMR 407

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + PD  T+     AY++        ++ + M  AG  P+
Sbjct: 408 VFPDSTTYKLLYKAYTKADKKELLEKLLKNMDKAGIIPN 446



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           MK   I P + S  LL+ +Y K     K E V   + +S  +P     NSM+  YG+   
Sbjct: 263 MKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARL 322

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            EK EEV   M+   Y     T   LI +YG    + K   +F  +     +  V T  +
Sbjct: 323 REKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNA 382

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            L  Y    L      +FE   +   +PD  T K+L  A +  D+ E +  L++ M K
Sbjct: 383 MLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELLEKLLKNMDK 440



 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 22/220 (10%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-PDTFVIN 113
           FSD   + + + +       +   LL     K     +C  V   M K      D  V +
Sbjct: 72  FSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWLECLEVFRWMQKQRWYIADNGVYS 131

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-----------GFIEK 162
            ++++ G+ GQ      + + M       D S YN LI  +               + EK
Sbjct: 132 KLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYFEK 191

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           M+G+      +R KP++VT+     A+++     +   +F+++ ++    D  T   ++ 
Sbjct: 192 MKGM------ERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMD 245

Query: 223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEK 258
           A      I+++  ++  M  +      I FNL    YG+K
Sbjct: 246 AYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKK 285


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 98/213 (46%), Gaps = 9/213 (4%)

Query: 39  LLQHTPNLFVFIFSIYFS---------DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           L +H P   VF F+I            +A A+F  MK +G +P + ++  L+  Y K G 
Sbjct: 190 LFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGE 249

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           + + E ++++M KSG   D    N+++N + + G  EK       M++    A++ T + 
Sbjct: 250 LEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLST 309

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            ++ + + G + +   LF  +  + + P+  T+TS +    +       + + +EM+  G
Sbjct: 310 FVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQG 369

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             P+  T  V++     E ++     ++  M +
Sbjct: 370 LVPNVVTYTVMVDGLCKEGKVAVADDVLSLMER 402



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 89/204 (43%), Gaps = 13/204 (6%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKS--HMLLLTAYSKTGNVAKCEGV 96
           P++F  + S+        DA      +++L + P  ++  H+LL  A ++ G      G+
Sbjct: 133 PSVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQG------GL 186

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + ++ +    P+ F  N +++   + G+  +   +   M+    + D+ TYN LI+ YG+
Sbjct: 187 VRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGK 246

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +E++E L   +       DVVT+ + +  +S+     +    F EM   G   +  T
Sbjct: 247 CGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVT 306

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
               + A   E  + +   L   M
Sbjct: 307 LSTFVDAFCKEGLVREAMKLFAQM 330



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 88/200 (44%), Gaps = 2/200 (1%)

Query: 43  TPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N  +  FS +     A++ F EMKRLG+   + +    + A+ K G V +   +  QM
Sbjct: 271 TYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQM 330

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
              G+ P+ F   S+++   + G+ +    +L  M       ++ TY ++++   + G +
Sbjct: 331 RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKV 390

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
              + +   +    +K + + +T+ +  +   K   R L++  EM + G   D      L
Sbjct: 391 AVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTL 450

Query: 221 ISACSSEDQIEQVTTLVRTM 240
           I       ++++  +L+  M
Sbjct: 451 IWGLCKVQKLDEAKSLLHKM 470



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 88/204 (43%), Gaps = 7/204 (3%)

Query: 44  PNLFVF--IFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN  ++  I   +F     S+A A+  ++   G+ P + ++  L+    K G++ +    
Sbjct: 477 PNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISH 536

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M + GL P+  V  ++++ + ++G   K   ++  M     + D   Y  LI+ + +
Sbjct: 537 FDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMK 596

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G ++    L   +    L+ D+  +T  ++ +    + +    +  EMI  G  PD   
Sbjct: 597 QGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTA 656

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
              LI        +E+ ++L   M
Sbjct: 657 YNCLIRKYQKLGNMEEASSLQNEM 680



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/153 (18%), Positives = 70/153 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EMK  G+   +  +  L+    K   + + + ++++M   GL+P+T +  ++++ + 
Sbjct: 431 LLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFF 490

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+  +   +L  +       ++ TY  LI+   + G I +    F  +    L P+V 
Sbjct: 491 KAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQ 550

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +T+ +  + +     + + +  EM+D G   D
Sbjct: 551 VYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLD 583



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 41/222 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV--- 111
             DA  + +EM   G+ P + ++ +++    K G VA  + V++ M ++G+K +  +   
Sbjct: 355 LDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTT 414

Query: 112 -----------------INSMLN--------LYGRL----GQFEKMEE---VLTAMEKGS 139
                            +N M N        LYG L     + +K++E   +L  M+   
Sbjct: 415 LIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCG 474

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              +   Y  +++ + + G   +   L   +P   L+P+VVT+ + +    +       +
Sbjct: 475 LRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAI 534

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             F++M + G  P+      LI      D   ++ +L + +H
Sbjct: 535 SHFDKMRELGLDPNVQVYTTLI------DGFCKIGSLSKAVH 570



 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/166 (18%), Positives = 74/166 (44%), Gaps = 14/166 (8%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A ++  +M   G+ P    +  ++ A+ K G  ++   +++++  SGL+P+     +
Sbjct: 460 LDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCA 519

Query: 115 MLN-------LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +++       +Y  +  F+KM E+           ++  Y  LI+ + + G + K   L 
Sbjct: 520 LIDGLCKAGSIYEAISHFDKMREL-------GLDPNVQVYTTLIDGFCKIGSLSKAVHLM 572

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             +  K +  D V +TS +  + ++   +    +  +MI+ G   D
Sbjct: 573 NEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLD 618


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 82/158 (51%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +++EMK  GI PT+ +   ++  Y + GN++K    +N M   G+ PD    N++
Sbjct: 556 SEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTL 615

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + +   F++   ++  ME+     ++ TYN ++  + R G +++ E +   +  K +
Sbjct: 616 INSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGI 675

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            PD  T+TS +  Y  K   +    + +EM+  G  PD
Sbjct: 676 NPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 1/176 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +    F+ +++ G   ++ +   LL A  K G V     V     KSG   + + +N M+
Sbjct: 172 EGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMV 231

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   + G+ + +   L+ ME+    AD+ TYN L+N Y R G + +  GL   +  K LK
Sbjct: 232 NALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLK 291

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSEDQIE 231
           P + T+ + +    ++  Y R   + +EM+  G  P+  T   +L+ +C  ED  E
Sbjct: 292 PGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWE 347



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 86/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F+EM   G+ P   +   L+  Y K GN+ K   +   M    LKPD    N+
Sbjct: 450 LDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNT 509

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + ++G+ EK +E+   M          +++ILIN +   G + +   L+  +  K 
Sbjct: 510 LMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKG 569

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP +VT  + +  Y R     +  +    MI  G  PD  T   LI++   E+  ++  
Sbjct: 570 IKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAF 629

Query: 235 TLVRTMHK 242
            L+  M +
Sbjct: 630 FLINNMEE 637



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 1/168 (0%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
             EM+  G+   + ++  L+ AY + G V++  G+++ M   GLKP  F  N+++N   +
Sbjct: 247 LSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCK 306

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G +E+ + VL  M       + +T+N ++    R   + + E +F  +  + + PD+++
Sbjct: 307 EGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLIS 366

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
           ++S +  +SR     R L  FE+M   G  PD     +LI+  C ++D
Sbjct: 367 FSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDD 414



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V +EM  +G+ P   +   +L    +  +V + E V N+M + G+ PD    +S
Sbjct: 310 YERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSS 369

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ ++ R G+  +       M+      D   Y ILIN Y R   +     +   +  + 
Sbjct: 370 IVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERG 429

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              DVVT+ + L    R K+     E+F+EM++ G +PD  T   LI     +  + +  
Sbjct: 430 CVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKAL 489

Query: 235 TLVRTM 240
           +L  TM
Sbjct: 490 SLFETM 495



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF EM + G+ P + S   ++  +S+ G + +      +M   GL PDT +   ++
Sbjct: 347 EAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILI 406

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y R        ++   M +     D+ TYN L+N   RG  ++  + LF+ +  + + 
Sbjct: 407 NGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVF 466

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T T+ +  Y +     + L +FE M      PD  T   L+       ++E+   L
Sbjct: 467 PDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKEL 526



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 83/175 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ +M    I P+  S  +L+  +   G V++   + ++M + G+KP     N+++ 
Sbjct: 523 AKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIK 582

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K  + L  M       D  TYN LIN + +    ++   L  ++  + L P
Sbjct: 583 GYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLP 642

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           ++VT+ + L  +SR    +    +  +MID G  PD  T   LI+   S+D +++
Sbjct: 643 NLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKE 697



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A FE+MK +G+ P    + +L+  Y +  +V+    + N+M + G   D    N++LN
Sbjct: 383 ALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLN 442

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R    +  +E+   M +     D  T   LI+ Y + G + K   LF+++  + LKP
Sbjct: 443 GLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKP 502

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CS 225
           DVVT+ + +  + +     +  E++ +MI    +P   +  +LI+  CS
Sbjct: 503 DVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCS 551



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 87/199 (43%), Gaps = 2/199 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  + + M   G+ P + ++  L+    K G+  + + V+++M   GL P+    N M
Sbjct: 276 SEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPM 335

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L    R     + E V   M +     D+ +++ ++ ++ R G + +    F+ +    L
Sbjct: 336 LVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGL 395

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD V +T  +  Y R       L++  EM++ GC  D  T   L++       ++    
Sbjct: 396 VPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADE 455

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L + M +  +   P ++ L
Sbjct: 456 LFKEMVE--RGVFPDFYTL 472



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V+E+  + G    + +  +++ A  K G +      +++M + G+  D    N+++N
Sbjct: 208 AWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVN 267

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   +   ++  M        + TYN LIN   + G  E+ + +   +    L P
Sbjct: 268 AYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCP 327

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +  T+   L    RK+       +F EM+  G  PD
Sbjct: 328 NAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPD 363


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 105/229 (45%), Gaps = 25/229 (10%)

Query: 10  DLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVF-------IFSIYFSDAHAVF 62
           +LCV   +PH   F+ LPY      I+       PNL ++         S     A  ++
Sbjct: 73  ELCVI--SPH---FDGLPYA-----ISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLY 122

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
             M  LG+ P   +   LL + +K+    + + +   + K G   D FV  S++++Y + 
Sbjct: 123 VCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQN 182

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G+ E   +V       S   D+ +Y  LI  Y   G+IE  + LF  +P K    DVV+W
Sbjct: 183 GRLEDARKVFDR----SPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVK----DVVSW 234

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            + ++ Y+    Y+  LE+F+EM+     PD  T   ++SAC+    IE
Sbjct: 235 NAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIE 283



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 99/194 (51%), Gaps = 8/194 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  +F+E+    +     S   +++ Y++TGN  +   +  +M K+ ++PD   + 
Sbjct: 215 YIESAQKLFDEIPVKDVV----SWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMV 270

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   + G  E   +V + ++   + +++   N L+++Y + G +E   GLF+ L   
Sbjct: 271 TVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGL--- 327

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L  DV++W + +  Y+   LY+  L +F+EM+ +G  P+  T   ++ AC+    I+  
Sbjct: 328 -LYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIG 386

Query: 234 TTLVRTMHKDMKTA 247
             +   + K +K+A
Sbjct: 387 RWIHVYIDKRLKSA 400



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK----GSYAADISTYNILI 151
           +  +M +SG +P+   + S+L     LG  +    +   ++K     + A+ + T   LI
Sbjct: 354 LFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTS--LI 411

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           ++Y + G IE    +F S+  K L     +W + +  ++         +IF  M   G  
Sbjct: 412 DMYAKCGDIEAAHQVFNSILHKSLS----SWNAMIFGFAMHGRADAAFDIFSRMRKIGIE 467

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
           PD  T   L+SACS    ++    + RTM +D K
Sbjct: 468 PDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYK 501


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 1/194 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA  V E MK  G  P + ++  L+  +   G V K   ++N+M   G+ PD    N 
Sbjct: 340 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 399

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G  E    +L  ME     AD  TYN LIN   + G  ++   LF SL  + 
Sbjct: 400 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 459

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-ACSSEDQIEQV 233
           +KP+ VT+ S +    +        +  E+M+ AGC PD  T    I   C  +   E +
Sbjct: 460 IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGL 519

Query: 234 TTLVRTMHKDMKTA 247
           + +   + KD+K +
Sbjct: 520 SFIGEMLQKDVKPS 533



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 73/181 (40%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +   MK LG  P+ +++  ++    +     + E ++ +M + GL P      +++N Y 
Sbjct: 276 MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYC 335

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+      VL  M+      ++ TYN L+  +   G + K   L   + A  + PD V
Sbjct: 336 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAV 395

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +              +   M   G   D  T   LI+A   + + +Q  +L  ++
Sbjct: 396 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 455

Query: 241 H 241
            
Sbjct: 456 E 456



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 35/231 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M+  G+ P   ++ LL+      G++     ++  M   GL  D +  N+++N
Sbjct: 378 AMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALIN 437

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-------FIEKM------- 163
              + G+ ++   +  ++E      +  T+N LIN   + G       F+EKM       
Sbjct: 438 ALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTP 497

Query: 164 -------------------EGL--FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
                              EGL     +  K +KP  V +T  +    +++ Y      +
Sbjct: 498 DTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTW 557

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            EM+ +GC PD  T    + A   E ++ +   ++  M K+  T   + +N
Sbjct: 558 GEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYN 608



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 67/148 (45%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M + G +P T    ++++   R  + ++ EE+L  M +   A  + T   +IN Y 
Sbjct: 276 MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYC 335

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +     + + +  +  KP+V T+ + +  +  +    + + +  +M   G  PD  
Sbjct: 336 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAV 395

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKD 243
           T  +LI     +  IE    L+R M  D
Sbjct: 396 TYNLLIRGQCIDGHIESAFRLLRLMEGD 423



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 18/180 (10%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM   G  P + ++   + AY   G + + E V+ +M K+G+  DT   N++++ +  +G
Sbjct: 559 EMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIG 618

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           Q +    +L  M   +   +  TY IL+                + L   RL  DV+  T
Sbjct: 619 QTDHAVSILKQMTSVASVPNQFTYFILL----------------RHLVRMRLVEDVLPLT 662

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
              A   +         +F+ M      P+ GT   ++   S + + E+ T+LV  M +D
Sbjct: 663 P--AGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKED 720



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 35/202 (17%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           PT  ++  ++ +  +  ++A+    ++ M +SG +PD +  NS++  Y R  Q +   ++
Sbjct: 151 PTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDL 210

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA------------------- 172
              M    +A D+ +Y  LI      G I++   LF  +                     
Sbjct: 211 FDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERG 270

Query: 173 -------KRLKPDVVTWTSRLAAYS-------RKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
                  +R+K   + W     AY+       R++  +   E+ +EM + G  P   T  
Sbjct: 271 EEGLLMLRRMKE--LGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCT 328

Query: 219 VLISACSSEDQIEQVTTLVRTM 240
            +I+A   E ++     ++  M
Sbjct: 329 AVINAYCKEGRMSDALRVLELM 350


>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 755

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F  + + G  P++ ++ LL+ A SK G+++  E V   M   GL PD    N+++ 
Sbjct: 494 AFQFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMY 553

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK---- 173
            YG+  Q  K+ E++  M     + D++TYNILI+     G++++   +   L  +    
Sbjct: 554 GYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVP 613

Query: 174 -------------------------------RLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
                                          R+KPDVVT ++ L  Y R +   + + +F
Sbjct: 614 SALAFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLF 673

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++++DAG  PD      LI    S   IE+   L+  M
Sbjct: 674 DKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLM 711



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 81/171 (47%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P +  +   L+    TG++ +   +  ++ + GL PD +   +M++ Y  LG+ +K  
Sbjct: 436 LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAF 495

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           +   A+ K      + TY +LI    + G I   E +F+ +  + L PDVVT+ + +  Y
Sbjct: 496 QFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGY 555

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +     +  E+ +EM  AG  PD  T  +LI +      +++   ++  +
Sbjct: 556 GKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISEL 606



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 72/161 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  GI+P + ++ +L+ +    G V +   +I+++ + G  P       ++    
Sbjct: 567 LIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFTDVIGGLS 626

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G F++   +   M       D+ T + L++ Y R   +EK   LF  L    LKPDVV
Sbjct: 627 KRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVV 686

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            + + +  Y       +  E+   M+  G  P+  T   L+
Sbjct: 687 LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 727



 Score = 41.6 bits (96), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 50/97 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  ++  M  L + P + +   LL  Y +   + K   + +++  +GLKPD  + N+
Sbjct: 631 FQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNT 690

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +++ Y  +G  EK  E++  M +     + ST++ L+
Sbjct: 691 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 727


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 80/144 (55%), Gaps = 1/144 (0%)

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           GV+ +M   GL+PD    N+ ++  G+ GQ++   E+ T +E   +A ++ +YN  I+  
Sbjct: 247 GVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIHAC 306

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPD 213
           GR G +++   L + +    ++PD V++ + +AA+++K  ++  LE+  EM +A G  PD
Sbjct: 307 GRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPD 366

Query: 214 GGTAKVLISACSSEDQIEQVTTLV 237
             +    +  C+   + E+ T L+
Sbjct: 367 LISYNTAMHVCAKAGRWERATELL 390



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 88/179 (49%), Gaps = 2/179 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  M+ +G+ P   S    + A ++         ++ +M    + P+       ++  G
Sbjct: 424 LFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVDACG 483

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G++E+  E++  ME     A++ TY   ++   RGG ++++  L + +  K ++P+VV
Sbjct: 484 RAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVV 543

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC--SSEDQIEQVTTLV 237
           ++T  + A +R   + R   + E+M+  G   D  + +  +S    + +++ E++T +V
Sbjct: 544 SYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLDSVSYRTALSTAGRAGDEEGERLTKIV 602



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 88/196 (44%), Gaps = 1/196 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           +  F     +  A  +  EMK   G+ P + S+   +   +K G   +   ++ +    G
Sbjct: 338 MAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQG 397

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           L+PD    N++++  GR G++ +  ++   ME+   A D  ++N  ++   R    +   
Sbjct: 398 LQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAAL 457

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            + + + A+ + P+V ++T  + A  R   + R LE+ EEM   G   +  T    + AC
Sbjct: 458 QILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDAC 517

Query: 225 SSEDQIEQVTTLVRTM 240
                +++V  L+  M
Sbjct: 518 CRGGAVDRVLVLLEEM 533



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + V   +  +  A  +  E    G+ P + S+  ++ A  + G   +   +  
Sbjct: 367 LISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFG 426

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M + G+ PD    N+ ++   R  +++   ++L  ME  S A ++ +Y I ++  GR G
Sbjct: 427 MMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAG 486

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             E+   L + +  + +  +V T+T+ + A  R     R L + EEM   G  P+
Sbjct: 487 EWERALELMEEMEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPN 541



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 52/111 (46%)

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
            LT ++      D+  + + I   G+     +  G+ + + A+ L+PD+V++ + + A  
Sbjct: 213 ALTVLDAPLIEVDVVGFTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALG 272

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   Y   LE+F E+ D G  P+  +    I AC     +++   L+R M 
Sbjct: 273 KAGQYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQ 323


>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
          Length = 815

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 91/200 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +  AVFE M   G+ P + S+  L+ AY+  G       V+  + ++G+ PD      
Sbjct: 336 IENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTC 395

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN YGR  Q  K +EV   M K     ++ TYN LI+ YG  GF+ +   +F+ +    
Sbjct: 396 LLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDG 455

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP+VV+  + LAA SR K       +       G   +       I +  +  ++E+  
Sbjct: 456 IKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAI 515

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            L ++M K    A  + F +
Sbjct: 516 ALYQSMRKKKVKADSVTFTI 535



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 4/199 (2%)

Query: 43  TPNLFVFIFSIYFSDAHAV--FEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           T N+ ++  S     + A+  F  M  KR    P + +   ++  YS  G +  C  V  
Sbjct: 285 TFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFE 344

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M   GLKP+    N+++  Y   G       VL  +++     D+ +Y  L+N YGR  
Sbjct: 345 AMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSR 404

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              K + +F  +  +R KP+VVT+ + + AY         +EIF +M   G  P+  +  
Sbjct: 405 QPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVC 464

Query: 219 VLISACSSEDQIEQVTTLV 237
            L++ACS   +   V T++
Sbjct: 465 TLLAACSRSKKKVNVDTVL 483



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 78/171 (45%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   V +  G+  +M K   KPD    ++++N +GR GQ+     ++  M + 
Sbjct: 148 MMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRA 207

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           + A   STYN LIN  G  G   +   + + +    + PD+VT    L+AY   + Y + 
Sbjct: 208 AIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKA 267

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           L  FE M  A   PD  T  ++I   S   Q  Q   L  +M +      P
Sbjct: 268 LSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRP 318



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 100/211 (47%), Gaps = 6/211 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  V ++M   G+ P + +H ++L+AY      +K       M  + ++PDT   N 
Sbjct: 229 WREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNI 288

Query: 115 MLNLYGRLGQFEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++    +LGQ  +  ++  +M  ++     D+ T+  ++++Y   G IE    +F+++ A
Sbjct: 289 IIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVA 348

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + LKP++V++ + + AY+   +    L +  ++   G  PD  +   L+++     Q  +
Sbjct: 349 EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGK 408

Query: 233 VTTLVRTMHKDMKTALPIYFN----LYGEKG 259
              +   M K+ +    + +N     YG  G
Sbjct: 409 AKEVFLMMRKERRKPNVVTYNALIDAYGSNG 439



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  +     +S A + FE MK   + P   +  +++   SK G  ++   + N
Sbjct: 248 LVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFN 307

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   ++  +PD     S+++LY   G+ E    V  AM       +I +YN L+  Y  
Sbjct: 308 SMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAV 367

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       +   +    + PDVV++T  L +Y R +   +  E+F  M      P+  T
Sbjct: 368 HGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVT 427

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   + +   + R M +D
Sbjct: 428 YNALIDAYGSNGFLAEAVEIFRQMEQD 454



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +F EM++    P  +++  L+ A+ + G       +++ M ++ + P     N
Sbjct: 158 WVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN 217

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N  G  G + +  EV   M       D+ T+NI+++ Y  G    K    F+ +   
Sbjct: 218 NLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGA 277

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIE 231
           +++PD  T+   +   S+     + L++F  M +  A C PD  T   ++   S + +IE
Sbjct: 278 KVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIE 337

Query: 232 QVTTLVRTM-HKDMKTALPIY------FNLYGEKGVARSNLGQYIGN 271
               +   M  + +K  +  Y      + ++G  G A S LG    N
Sbjct: 338 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQN 384



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 36/238 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++A  +F +M++ GI P + S   LL A S++      + V++     G+  +T   N
Sbjct: 440 FLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYN 499

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN--------------------- 152
           S +  Y    + EK   +  +M K    AD  T+ ILI+                     
Sbjct: 500 SAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDL 559

Query: 153 --------------IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                          Y + G + + E +F  +     +PDV+ +TS L AY+  + + + 
Sbjct: 560 SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKA 619

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNLY 255
            E+  EM   G  PD      L+ A +   Q   V  L+  M  K++     ++F ++
Sbjct: 620 CELLLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIF 677



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M++    P + ++  L+ AY   G +A+   +  QM + G+KP+   + ++L 
Sbjct: 409 AKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLA 468

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R  +   ++ VL+A +      + + YN  I  Y     +EK   L+QS+  K++K 
Sbjct: 469 ACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKA 528

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+T  ++   R   Y   +   +EM D            ++ A S + Q+ +  ++ 
Sbjct: 529 DSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIF 588

Query: 238 RTM 240
             M
Sbjct: 589 NQM 591



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 1/167 (0%)

Query: 75  KSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
           K+  +L+   S+ G +  C  V   M  +        + N M+ L+ R    ++   +  
Sbjct: 108 KNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFF 167

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            M+K S   D  TY+ LIN +GR G       L   +    + P   T+ + + A     
Sbjct: 168 EMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSG 227

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +R  LE+ ++M D G  PD  T  +++SA  S  Q  +  +    M
Sbjct: 228 NWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELM 274


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 14/209 (6%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL  F   +Y         +A  V  +MK  G+ P +     LL+ Y+  G +A    +
Sbjct: 237 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 296

Query: 97  INQMHKSGLKPD----TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           +N M K G +P+    T +I ++     R+ +  +   V   ME+    ADI TY  LI+
Sbjct: 297 LNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMR---VFVEMERYGCEADIVTYTALIS 353

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            + + G I+K   +   +  K + P  VT+   L A+ +K+ +  CLE+ E+M   GC+P
Sbjct: 354 GFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHP 413

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           D     V+I    +  ++++   L   M 
Sbjct: 414 DLLIYNVVIRLACNFREVKEAVRLWNEME 442



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 2/179 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VF EM+R G    + ++  L++ + K G + K   V++ M K G+ P       
Sbjct: 326 MDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQ 385

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + +  QFE+  E++  M++     D+  YN++I +      +++   L+  + A  
Sbjct: 386 ILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANG 445

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY--PDGGTAKVLISACSSEDQIE 231
           L P    +   +  ++ +         F+EM+  G +  P  GT K L++    +D++E
Sbjct: 446 LSPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGIFSAPQYGTLKSLLNTLLRDDKLE 504



 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 9/171 (5%)

Query: 75  KSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFVINSMLNLYGRLGQFEKMEEV 131
           KS + +L+   + G V    G+I +M K     ++P+ FV+  ++  +      +K  EV
Sbjct: 138 KSMVKILSKMRQFGAVW---GLIEEMRKENPELIEPELFVV--LIRRFASANMVKKAVEV 192

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           L  M K  +  D   +  L++   + G ++    +F+ +  K + P++  +TS L  + R
Sbjct: 193 LDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMREK-IPPNLRYFTSLLYGWCR 251

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +       E+  +M +AG  PD      L+S  +   ++     L+  M K
Sbjct: 252 EGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRK 302


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 92/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M+  G  P + ++  ++ ++ K   V +   + + M   G+ PD F  NS++ 
Sbjct: 222 AAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQ 281

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 Q+++   +L  M   +   DI T+N+L++   + G + + +G+ +++    ++P
Sbjct: 282 GLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEP 341

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT++S +  YS +       ++F+ MI  GC PD  +  +LI+      +I++   L 
Sbjct: 342 DVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLF 401

Query: 238 RTM 240
             M
Sbjct: 402 NEM 404



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EM   G+TP   S+  L+    + G++ +   +   MH +G  P+ F  + 
Sbjct: 394 IDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSI 453

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ + + G F K   +  AM+      ++  YNILI+   + G +     LF  L  K 
Sbjct: 454 LLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKG 513

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           L+P+   +T+ +    ++ L    LE F  M + GC PD  +  V+I
Sbjct: 514 LQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVII 560



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 95/211 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A A+  EM+ L I P + +  +L+    K G V++ +GV+  M + G++PD    +S
Sbjct: 289 WKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSS 348

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y    +  +  ++  AM       D+ +YNILIN Y +   I++ + LF  +  + 
Sbjct: 349 LMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQG 408

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+ V++ + +    +    R    +F+ M   G  P+  T  +L+     +    +  
Sbjct: 409 LTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAF 468

Query: 235 TLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            L R M         + +N+  +      NL
Sbjct: 469 RLFRAMQSTYSKPNLVMYNILIDAMCKSGNL 499



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 84/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +V  ++ +LG+ PT+ +   L+    K G  A+   + + M   G +PD +   +++N
Sbjct: 152 AFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIIN 211

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G+      +L  ME+     ++ TY+ +I+ + +   + +   +F  +  K + P
Sbjct: 212 GLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISP 271

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ S +        ++    +  EM      PD  T  VL+     E ++ +   ++
Sbjct: 272 DIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVL 331

Query: 238 RTM 240
           +TM
Sbjct: 332 KTM 334



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 87/187 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ M   G  P + S+ +L+  Y K   + + + + N+M   GL P+    N+++
Sbjct: 361 EARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLI 420

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +LG   +   +   M       ++ TY+IL++ + + G+  K   LF+++ +   K
Sbjct: 421 HGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSK 480

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++V +   + A  +    R   ++F E+   G  P+      +I+    E  +++    
Sbjct: 481 PNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEA 540

Query: 237 VRTMHKD 243
            R M +D
Sbjct: 541 FRNMEED 547



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 82/188 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F  MK  GI+P + ++  L+          +   ++N+M    + PD    N +
Sbjct: 255 NEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVL 314

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+  + + VL  M +     D+ TY+ L+  Y     + +   LF ++  K  
Sbjct: 315 VDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGC 374

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDV ++   +  Y + K      ++F EMI  G  P+  +   LI        + +   
Sbjct: 375 KPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARN 434

Query: 236 LVRTMHKD 243
           L + MH +
Sbjct: 435 LFKNMHTN 442



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 88/188 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y+    ++ ++M+  G++P + +  +L+  +S    V     V+ ++ K GL+P      
Sbjct: 113 YYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFT 172

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N   ++G+F +  E+   M       D+ TY  +IN   + G      GL + +   
Sbjct: 173 TLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEA 232

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +P+VVT+++ + ++ + +     L+IF  M   G  PD  T   LI    +  Q ++ 
Sbjct: 233 GCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEA 292

Query: 234 TTLVRTMH 241
           + L+  M 
Sbjct: 293 SALLNEMR 300



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNLF +   +       YF  A  +F  M+     P +  + +L+ A  K+GN+     +
Sbjct: 446 PNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKL 505

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
            +++   GL+P+  +  +++N   + G  ++  E    ME+     D  +YN++I
Sbjct: 506 FSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVII 560



 Score = 44.3 bits (103), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA-MEKGSYAADISTYNILINIYGRGG 158
           +H+  L P       +L+   ++GQ+      LT  ME    + +I T +ILIN +    
Sbjct: 89  LHRKPL-PCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQ 147

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            ++    +   +    L+P +VT+T+ +    +   + + +E+F++M+  GC PD  T  
Sbjct: 148 RVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYT 207

Query: 219 VLISACSSEDQIEQVTTLVRTMHK 242
            +I+      +      L++ M +
Sbjct: 208 TIINGLCKIGETAAAAGLLKKMEE 231


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 82/186 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A + +  M   GI    K++ +L+    K   V   E +  +M   G+ PD F    ++
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + +LG  +K   +   M +     ++  YN+L+  + R G IEK + L   +  K L 
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT+ + +  Y +         +F+EM   G  PD      L+  C   + +E+  T+
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754

Query: 237 VRTMHK 242
             T  K
Sbjct: 755 FGTNKK 760



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 45/243 (18%)

Query: 43  TPNLFV-------FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+ +       F  S     A  + +EM   G+ P   ++  ++  Y K+G++A+   
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFR 718

Query: 96  VINQMHKSGLKPDTFV----------------------------------INSMLNLYGR 121
           + ++M   GL PD+FV                                   N+++N   +
Sbjct: 719 LFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFK 778

Query: 122 LGQFEKMEEVLTAMEKGSY----AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            G+ E   EVL  +  GS+      +  TYNI+I+   + G +E  + LF  +    L P
Sbjct: 779 FGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V+T+TS L  Y +         +F+E I AG  PD     V+I+A   E    +   LV
Sbjct: 839 TVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLV 898

Query: 238 RTM 240
             M
Sbjct: 899 DQM 901



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 8/196 (4%)

Query: 44  PNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +       I +  F+ A    +EM+  G+ P       L+  Y K G V +    
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSA 579

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M   G+  D      ++N   +  + +  EE+   M     A D+ +Y +LIN + +
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G ++K   +F  +  + L P+V+ +   L  + R     +  E+ +EM   G +P+  T
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 217 AKVLISA-CSSEDQIE 231
              +I   C S D  E
Sbjct: 700 YCTIIDGYCKSGDLAE 715



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 83/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A +   EM   G+ P   ++   ++ Y +    A  +  + +M + G+ P+  +   +
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y + G+  +      +M       D  TY +L+N   +   ++  E +F+ +  K +
Sbjct: 564 INEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV ++   +  +S+    ++   IF+EM++ G  P+     +L+       +IE+   
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 236 LVRTM 240
           L+  M
Sbjct: 684 LLDEM 688



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/183 (18%), Positives = 80/183 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            + +  EMK+  I  +  ++  ++     +G++     ++ +M  SG +P+  +  +++ 
Sbjct: 401 GYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIK 460

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  +F     VL  M++   A DI  YN LI    +   +++       +    LKP
Sbjct: 461 TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKP 520

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+ + ++ Y     +    +  +EM + G  P+      LI+    + ++ +  +  
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAY 580

Query: 238 RTM 240
           R+M
Sbjct: 581 RSM 583



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 76/183 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM   GI      +   +   SK G + K + + + M  SGL P      S++ 
Sbjct: 331 AKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIE 390

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R     +  E+L  M+K +      TY  ++      G ++    + + + A   +P
Sbjct: 391 GYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP 450

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VV +T+ +  + +   +   + + +EM + G  PD      LI   S   ++++  + +
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 238 RTM 240
             M
Sbjct: 511 VEM 513



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KP+    N M++   + G  E  +E+   M+  +    + TY  L+N Y + G   +M  
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-----IDAGCYPDGGTAKVL 220
           +F    A  ++PD + ++  + A+ ++ +  + L + ++M     +D GC     T + L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 221 ISACSSEDQIEQVTTLVRTM 240
           +S  +   ++E    ++  M
Sbjct: 922 LSGFAKVGEMEVAEKVMENM 941



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P   ++ +++    K GN+   + + +QM  + L P      S+LN Y ++G+  +M  V
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-----VVTWTSRL 186
                      D   Y+++IN + + G   K   L   + AK    D     + T  + L
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-ACSSEDQ 229
           + +++        ++ E M+     PD  T   LI+ +C S +Q
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQ 966



 Score = 41.2 bits (95), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/185 (16%), Positives = 70/185 (37%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+F+ M   G+ P  +++  L+  Y +  NV +   ++ +M K  +    +   +++ 
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G  +    ++  M       ++  Y  LI  + +         + + +  + + P
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+  + S +   S+ K          EM++ G  P+  T    IS      +       V
Sbjct: 486 DIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYV 545

Query: 238 RTMHK 242
           + M +
Sbjct: 546 KEMRE 550



 Score = 40.8 bits (94), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 37/203 (18%), Positives = 82/203 (40%), Gaps = 21/203 (10%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----------------- 103
           V++ M    +   +K++ +L+ A+ + GNV   + V+ +  K                  
Sbjct: 208 VYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKES 267

Query: 104 ----GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
               GL P  +  + +++   ++ + E  + +L  M+    + D  TY++LI+   +G  
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            +  +GL   + +  +      +   +   S++ +  +   +F+ MI +G  P       
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387

Query: 220 LISACSSEDQIEQVTTLVRTMHK 242
           LI     E  + Q   L+  M K
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKK 410


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 82/186 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A + +  M   GI    K++ +L+    K   V   E +  +M   G+ PD F    ++
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + +LG  +K   +   M +     ++  YN+L+  + R G IEK + L   +  K L 
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT+ + +  Y +         +F+EM   G  PD      L+  C   + +E+  T+
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754

Query: 237 VRTMHK 242
             T  K
Sbjct: 755 FGTNKK 760



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 45/243 (18%)

Query: 43  TPNLFV-------FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+ +       F  S     A  + +EM   G+ P   ++  ++  Y K+G++A+   
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFR 718

Query: 96  VINQMHKSGLKPDTFV----------------------------------INSMLNLYGR 121
           + ++M   GL PD+FV                                   N+++N   +
Sbjct: 719 LFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFK 778

Query: 122 LGQFEKMEEVLTAMEKGSY----AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            G+ E   EVL  +  GS+      +  TYNI+I+   + G +E  + LF  +    L P
Sbjct: 779 FGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V+T+TS L  Y +         +F+E I AG  PD     V+I+A   E    +   LV
Sbjct: 839 TVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLV 898

Query: 238 RTM 240
             M
Sbjct: 899 DQM 901



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 99/234 (42%), Gaps = 35/234 (14%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           +T  +  F+ +  F DA  V +EMK  GI P +  +  L+   SK   + +    + +M 
Sbjct: 455 YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514

Query: 102 KSGLKPDTFVINSMLNLY-----------------------------GRLGQFEKMEEVL 132
           ++GLKP+ F   + ++ Y                             G + ++ K E+V+
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVI 574

Query: 133 TA------MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
            A      M       D  TY +L+N   +   ++  E +F+ +  K + PDV ++   +
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             +S+    ++   IF+EM++ G  P+     +L+       +IE+   L+  M
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 8/196 (4%)

Query: 44  PNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +       I +  F+ A    +EM+  G+ P       L+  Y K   V +    
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSA 579

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M   G+  D      ++N   +  + +  EE+   M     A D+ +Y +LIN + +
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G ++K   +F  +  + L P+V+ +   L  + R     +  E+ +EM   G +P+  T
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 217 AKVLISA-CSSEDQIE 231
              +I   C S D  E
Sbjct: 700 YCTIIDGYCKSGDLAE 715



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/183 (18%), Positives = 81/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            + +  EMK+  I  +  ++  ++     +G++     ++ +M  SG +P+  +  +++ 
Sbjct: 401 GYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIK 460

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  +F     VL  M++   A DI  YN LI    +   +++       +    LKP
Sbjct: 461 TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKP 520

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+ + ++ Y     +    +  +EM + G  P+      LI+    ++++ +  +  
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAY 580

Query: 238 RTM 240
           R+M
Sbjct: 581 RSM 583



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 76/183 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM   GI      +   +   SK G + K + + + M  SGL P      S++ 
Sbjct: 331 AKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIE 390

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R     +  E+L  M+K +      TY  ++      G ++    + + + A   +P
Sbjct: 391 GYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP 450

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VV +T+ +  + +   +   + + +EM + G  PD      LI   S   ++++  + +
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 238 RTM 240
             M
Sbjct: 511 VEM 513



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KP+    N M++   + G  E  +E+   M+  +    + TY  L+N Y + G   +M  
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-----IDAGCYPDGGTAKVL 220
           +F    A  ++PD + ++  + A+ ++ +  + L + ++M     +D GC     T + L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 221 ISACSSEDQIEQVTTLVRTM 240
           +S  +   ++E    ++  M
Sbjct: 922 LSGFAKVGEMEVAEKVMENM 941



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P   ++ +++    K GN+   + + +QM  + L P      S+LN Y ++G+  +M  V
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-----VVTWTSRL 186
                      D   Y+++IN + + G   K   L   + AK    D     + T  + L
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-ACSSEDQ 229
           + +++        ++ E M+     PD  T   LI+ +C S +Q
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQ 966



 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/185 (16%), Positives = 70/185 (37%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+F+ M   G+ P  +++  L+  Y +  NV +   ++ +M K  +    +   +++ 
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G  +    ++  M       ++  Y  LI  + +         + + +  + + P
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+  + S +   S+ K          EM++ G  P+  T    IS      +       V
Sbjct: 486 DIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYV 545

Query: 238 RTMHK 242
           + M +
Sbjct: 546 KEMRE 550



 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/203 (18%), Positives = 82/203 (40%), Gaps = 21/203 (10%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----------------- 103
           V++ M    +   +K++ +L+ A+ + GNV   + V+ +  K                  
Sbjct: 208 VYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKES 267

Query: 104 ----GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
               GL P  +  + +++   ++ + E  + +L  M+    + D  TY++LI+   +G  
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            +  +GL   + +  +      +   +   S++ +  +   +F+ MI +G  P       
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387

Query: 220 LISACSSEDQIEQVTTLVRTMHK 242
           LI     E  + Q   L+  M K
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKK 410


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 82/186 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A + +  M   GI    K++ +L+    K   V   E +  +M   G+ PD F    ++
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + +LG  +K   +   M +     ++  YN+L+  + R G IEK + L   +  K L 
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT+ + +  Y +         +F+EM   G  PD      L+  C   + +E+  T+
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754

Query: 237 VRTMHK 242
             T  K
Sbjct: 755 FGTNKK 760



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 45/243 (18%)

Query: 43  TPNLFV-------FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+ +       F  S     A  + +EM   G+ P   ++  ++  Y K+G++A+   
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFR 718

Query: 96  VINQMHKSGLKPDTFV----------------------------------INSMLNLYGR 121
           + ++M   GL PD+FV                                   N+++N   +
Sbjct: 719 LFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFK 778

Query: 122 LGQFEKMEEVLTAMEKGSY----AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            G+ E   EVL  +  GS+      +  TYNI+I+   + G +E  + LF  +    L P
Sbjct: 779 FGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V+T+TS L  Y +         +F+E I AG  PD     V+I+A   E    +   LV
Sbjct: 839 TVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLV 898

Query: 238 RTM 240
             M
Sbjct: 899 DQM 901



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 8/196 (4%)

Query: 44  PNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +       I +  F+ A    +EM+  G+ P       L+  Y K G V +    
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSA 579

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M   G+  D      ++N   +  + +  EE+   M     A D+ +Y +LIN + +
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G ++K   +F  +  + L P+V+ +   L  + R     +  E+ +EM   G +P+  T
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 217 AKVLISA-CSSEDQIE 231
              +I   C S D  E
Sbjct: 700 YCTIIDGYCKSGDLAE 715



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 83/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A +   EM   G+ P   ++   ++ Y +    A  +  + +M + G+ P+  +   +
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y + G+  +      +M       D  TY +L+N   +   ++  E +F+ +  K +
Sbjct: 564 INEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV ++   +  +S+    ++   IF+EM++ G  P+     +L+       +IE+   
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 236 LVRTM 240
           L+  M
Sbjct: 684 LLDEM 688



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/183 (18%), Positives = 80/183 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            + +  EMK+  I  +  ++  ++     +G++     ++ +M  SG +P+  +  +++ 
Sbjct: 401 GYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIK 460

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  +F     VL  M++   A DI  YN LI    +   +++       +    LKP
Sbjct: 461 TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKP 520

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+ + ++ Y     +    +  +EM + G  P+      LI+    + ++ +  +  
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAY 580

Query: 238 RTM 240
           R+M
Sbjct: 581 RSM 583



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 76/183 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM   GI      +   +   SK G + K + + + M  SGL P      S++ 
Sbjct: 331 AKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIE 390

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R     +  E+L  M+K +      TY  ++      G ++    + + + A   +P
Sbjct: 391 GYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP 450

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VV +T+ +  + +   +   + + +EM + G  PD      LI   S   ++++  + +
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 238 RTM 240
             M
Sbjct: 511 VEM 513



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KP+    N M++   + G  E  +E+   M+  +    + TY  L+N Y + G   +M  
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-----IDAGCYPDGGTAKVL 220
           +F    A  ++PD + ++  + A+ ++ +  + L + ++M     +D GC     T + L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 221 ISACSSEDQIEQVTTLVRTM 240
           +S  +   ++E    ++  M
Sbjct: 922 LSGFAKVGEMEVAEKVMENM 941



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P   ++ +++    K GN+   + + +QM  + L P      S+LN Y ++G+  +M  V
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-----VVTWTSRL 186
                      D   Y+++IN + + G   K   L   + AK    D     + T  + L
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-ACSSEDQ 229
           + +++        ++ E M+     PD  T   LI+ +C S +Q
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQ 966



 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/185 (16%), Positives = 70/185 (37%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+F+ M   G+ P  +++  L+  Y +  NV +   ++ +M K  +    +   +++ 
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G  +    ++  M       ++  Y  LI  + +         + + +  + + P
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+  + S +   S+ K          EM++ G  P+  T    IS      +       V
Sbjct: 486 DIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYV 545

Query: 238 RTMHK 242
           + M +
Sbjct: 546 KEMRE 550



 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/203 (18%), Positives = 82/203 (40%), Gaps = 21/203 (10%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----------------- 103
           V++ M    +   +K++ +L+ A+ + GNV   + V+ +  K                  
Sbjct: 208 VYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKES 267

Query: 104 ----GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
               GL P  +  + +++   ++ + E  + +L  M+    + D  TY++LI+   +G  
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            +  +GL   + +  +      +   +   S++ +  +   +F+ MI +G  P       
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387

Query: 220 LISACSSEDQIEQVTTLVRTMHK 242
           LI     E  + Q   L+  M K
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKK 410


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 91/186 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VF EM + GI P + +   L+    K GN+ +   ++ QM + GL+ +     +++
Sbjct: 313 EALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALI 372

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G  +     +  M++      +  YN LIN Y   G +++   L   + AK LK
Sbjct: 373 DGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK 432

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+++ ++AY +        E+ ++M++ G  PD  T   LI     E ++     L
Sbjct: 433 PDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVL 492

Query: 237 VRTMHK 242
            + M K
Sbjct: 493 FKNMIK 498



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 86/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A   F+ M   G+ P + ++ +L+ A    G+  +   ++  M  +G  P+    N+
Sbjct: 171 LTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNT 230

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R G+ +  E ++  M +G    ++ T+N ++N   + G +E    +F  +  + 
Sbjct: 231 LVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREG 290

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD V++ + +  Y +       L +F EM   G  PD  T   LI        +E+  
Sbjct: 291 LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAV 350

Query: 235 TLVRTMHK 242
           TLVR M +
Sbjct: 351 TLVRQMRE 358



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A ++  +M+  G  P + ++  L+ A+ + G V   E ++  M + GLKP+    NSM+
Sbjct: 208 EALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMV 267

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   + G+ E   +V   M +   A D  +YN L+  Y + G   +   +F  +  K + 
Sbjct: 268 NGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIM 327

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+TS +    +     R + +  +M + G   +  T   LI     +  ++     
Sbjct: 328 PDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 387

Query: 237 VRTMHK 242
           VR M +
Sbjct: 388 VRGMKQ 393



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 1/191 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA      MK+  I P++  +  L+  Y   G + +   ++++M   GLKPD    +
Sbjct: 380 FLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYS 439

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ Y +        E+   M +     D  TY+ LI +      +     LF+++   
Sbjct: 440 TIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKL 499

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS-SEDQIEQ 232
            L+PD  T+TS +  + ++      L + ++M+ AG  PD  T  VLI+  S S   +E 
Sbjct: 500 GLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEA 559

Query: 233 VTTLVRTMHKD 243
              L +  H+D
Sbjct: 560 QQLLFKLYHED 570



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 80/182 (43%), Gaps = 15/182 (8%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDAH +F+ M +LG+ P   ++  L+  + K GNV     + ++M K+G+ PD    + 
Sbjct: 486 LSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSV 545

Query: 115 MLNLYGRLGQFEKMEEVL---------------TAMEKGSYAADISTYNILINIYGRGGF 159
           ++N   +  +  + +++L                A+      A++ +   L+  +   G 
Sbjct: 546 LINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGL 605

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           + + + ++QS+  +    D   ++  +  + R     + L   ++M+  G  P+  +   
Sbjct: 606 MNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTIS 665

Query: 220 LI 221
           LI
Sbjct: 666 LI 667


>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 810

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  AVFE M   G+ P + S+  L+ AY+  G       V+  + ++G+ PD      +L
Sbjct: 338 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLL 397

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YGR  Q  K +EV   M K     ++ TYN LI+ YG  GF+ +   +F+ +    +K
Sbjct: 398 NSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIK 457

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VV+  + LAA SR K       +       G   +       I +  +  ++E+   L
Sbjct: 458 PNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIAL 517

Query: 237 VRTMHKDMKTALPIYFNL 254
            ++M K    A  + F +
Sbjct: 518 YQSMRKKKVKADSVTFTI 535



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 4/199 (2%)

Query: 43  TPNLFVFIFSIYFSDAHAV--FEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           T N+ ++  S     + A+  F  M  KR    P + +   ++  YS  G +  C  V  
Sbjct: 285 TFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFE 344

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M   GLKP+    N+++  Y   G       VL  +++     D+ +Y  L+N YGR  
Sbjct: 345 AMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSR 404

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              K + +F  +  +R KP+VVT+ + + AY         +EIF +M   G  P+  +  
Sbjct: 405 QPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVC 464

Query: 219 VLISACSSEDQIEQVTTLV 237
            L++ACS   +   V T++
Sbjct: 465 TLLAACSRSKKKVNVDTVL 483



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 78/171 (45%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   V +  G+  +M K   KPD    ++++N +GR GQ+     ++  M + 
Sbjct: 148 MMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRA 207

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           + A   STYN LIN  G  G   +   + + +    + PD+VT    L+AY   + Y + 
Sbjct: 208 AIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKA 267

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           L  FE M  A   PD  T  ++I   S   Q  Q   L  +M +      P
Sbjct: 268 LSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRP 318



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 100/211 (47%), Gaps = 6/211 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  V ++M   G+ P + +H ++L+AY      +K       M  + ++PDT   N 
Sbjct: 229 WREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNI 288

Query: 115 MLNLYGRLGQFEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++    +LGQ  +  ++  +M  ++     D+ T+  ++++Y   G IE    +F+++ A
Sbjct: 289 IIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVA 348

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + LKP++V++ + + AY+   +    L +  ++   G  PD  +   L+++     Q  +
Sbjct: 349 EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGK 408

Query: 233 VTTLVRTMHKDMKTALPIYFN----LYGEKG 259
              +   M K+ +    + +N     YG  G
Sbjct: 409 AKEVFLMMRKERRKPNVVTYNALIDAYGSNG 439



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 24/226 (10%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++A  +F +M++ GI P + S   LL A S++      + V++     G+  +T   N
Sbjct: 440 FLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYN 499

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR----------------- 156
           S +  Y    + EK   +  +M K    AD  T+ ILI+   R                 
Sbjct: 500 SAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDL 559

Query: 157 ------GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
                  G + + E +F  +     +PDV+ +TS L AY+  + + +  E+F EM   G 
Sbjct: 560 SIPLTKEGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGI 619

Query: 211 YPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNLY 255
            PD      L+ A +   Q   V  L+  M  K++     ++F ++
Sbjct: 620 EPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIF 665



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  +     +S A + FE MK   + P   +  +++   SK G  ++   + N
Sbjct: 248 LVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFN 307

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   ++  +PD     S+++LY   G+ E    V  AM       +I +YN L+  Y  
Sbjct: 308 SMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAV 367

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       +   +    + PDVV++T  L +Y R +   +  E+F  M      P+  T
Sbjct: 368 HGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVT 427

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   + +   + R M +D
Sbjct: 428 YNALIDAYGSNGFLAEAVEIFRQMEQD 454



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +F EM++    P  +++  L+ A+ + G       +++ M ++ + P     N
Sbjct: 158 WVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN 217

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N  G  G + +  EV   M       D+ T+NI+++ Y  G    K    F+ +   
Sbjct: 218 NLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGA 277

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIE 231
           +++PD  T+   +   S+     + L++F  M +  A C PD  T   ++   S + +IE
Sbjct: 278 KVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIE 337

Query: 232 QVTTLVRTM-HKDMKTALPIY------FNLYGEKGVARSNLGQYIGN 271
               +   M  + +K  +  Y      + ++G  G A S LG    N
Sbjct: 338 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQN 384



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 72/150 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M++    P + ++  L+ AY   G +A+   +  QM + G+KP+   + ++L 
Sbjct: 409 AKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLA 468

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R  +   ++ VL+A +      + + YN  I  Y     +EK   L+QS+  K++K 
Sbjct: 469 ACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKA 528

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           D VT+T  ++   R   Y   +   +EM D
Sbjct: 529 DSVTFTILISGSCRMSKYPEAISYLKEMED 558



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 1/167 (0%)

Query: 75  KSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
           K+  +L+   S+ G +  C  V   M  +        + N M+ L+ R    ++   +  
Sbjct: 108 KNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFF 167

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            M+K S   D  TY+ LIN +GR G       L   +    + P   T+ + + A     
Sbjct: 168 EMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSG 227

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +R  LE+ ++M D G  PD  T  +++SA  S  Q  +  +    M
Sbjct: 228 NWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELM 274


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 6/202 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F++M  +G+ P   ++  L+  Y   G++ +     ++M K G+ P     N 
Sbjct: 335 LEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNL 394

Query: 115 MLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +++   + GR+G+ + M   +  M K     D  TYNILIN Y R G  +K   L   + 
Sbjct: 395 LVHALFMEGRMGEADDM---IKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML 451

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +K ++P  VT+TS +   SR+   +   ++FE+++D G  PD      ++    +   +E
Sbjct: 452 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 511

Query: 232 QVTTLVRTMHKDMKTALPIYFN 253
           +   L++ M +       + FN
Sbjct: 512 RAFMLLKEMDRKSVPPDEVTFN 533



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 87/197 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ EM RL I+ T+ +  +++    K G + K    I  M   G KP+    N++++
Sbjct: 233 AWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIH 292

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E    +L AM       D  TY  LI+   + G +E+  GLF  +    L P
Sbjct: 293 GYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVP 352

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + VT+ + +  Y  K    R     +EM+  G  P   T  +L+ A   E ++ +   ++
Sbjct: 353 NAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMI 412

Query: 238 RTMHKDMKTALPIYFNL 254
           + M K       I +N+
Sbjct: 413 KEMRKKGIIPDAITYNI 429



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +  +EM + GI P++ ++ LL+ A    G + + + +I +M K G+ PD    N ++N
Sbjct: 373 AFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILIN 432

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  +K  ++   M          TY  LI +  R   +++ + LF+ +  + + P
Sbjct: 433 GYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSP 492

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV+ + + +  +       R   + +EM      PD  T   L+     E ++E+   L+
Sbjct: 493 DVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLL 552

Query: 238 RTMHKDMKTALPIYFNL----YGEKG 259
             M +       I +N     YG +G
Sbjct: 553 DEMKRRGIKPDHISYNTLISGYGRRG 578



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 93/208 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + M+  GI P   ++  L++   K G + +  G+ ++M + GL P+    N++++
Sbjct: 303 ARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 362

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E+       M K      +STYN+L++     G + + + + + +  K + P
Sbjct: 363 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 422

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+   +  YSR    ++  ++  EM+  G  P   T   LI   S  +++++   L 
Sbjct: 423 DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 482

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSNL 265
             +     +   I FN   +   A  N+
Sbjct: 483 EKILDQGVSPDVIMFNAMVDGHCANGNV 510



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM   GI PT  ++  L+   S+   + + + +  ++   G+ PD  + N+M++
Sbjct: 443 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 502

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  E+   +L  M++ S   D  T+N L+    R G +E+   L   +  + +KP
Sbjct: 503 GHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKP 562

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +++ + ++ Y R+   +    + +EM+  G  P   T   LI       + +    L+
Sbjct: 563 DHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELL 622

Query: 238 RTM 240
           + M
Sbjct: 623 KEM 625



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 80/167 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + +EM++ GI P   ++ +L+  YS+ GN  K   + N+M   G++P      S++
Sbjct: 407 EADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 466

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +  R  + ++ +++   +     + D+  +N +++ +   G +E+   L + +  K + 
Sbjct: 467 YVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVP 526

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD VT+ + +    R+        + +EM   G  PD  +   LIS 
Sbjct: 527 PDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 573



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 88/191 (46%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + +T  ++V        +A  +FE++   G++P +     ++  +   GNV +   ++ +
Sbjct: 460 VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKE 519

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  + PD    N+++    R G+ E+   +L  M++     D  +YN LI+ YGR G 
Sbjct: 520 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGD 579

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I+    +   + +    P ++T+ + +    + +      E+ +EM++ G  PD  T   
Sbjct: 580 IKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLS 639

Query: 220 LISACSSEDQI 230
           LI    + D +
Sbjct: 640 LIEGMGNVDTL 650



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 83/178 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A   F  MK  GI P +++   +L+ + K   +     +  +M +  +    +  N M
Sbjct: 196 DEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIM 255

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N+  + G+ +K  E +  ME   +  ++ +YN +I+ Y   G IE    +  ++  K +
Sbjct: 256 VNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGI 315

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           +PD  T+ S ++   ++        +F++M++ G  P+  T   LI    ++  +E+ 
Sbjct: 316 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 373



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 65/141 (46%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M + G+ P     N ML+L+ +L + E    +   M +   ++ + T+NI++N+  + G 
Sbjct: 205 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGK 264

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           ++K       +     KP+VV++ + +  YS +        I + M   G  PD  T   
Sbjct: 265 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 324

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LIS    E ++E+ + L   M
Sbjct: 325 LISGMCKEGRLEEASGLFDKM 345


>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV--INQMHKSGLKPDTFVINSM 115
           A  +  EM RLGI PT+ ++   + A ++ G     + V  +  M  +G+ PD+   NS+
Sbjct: 135 AQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYNSL 194

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +   G+ GQ+++   VL  M+K   + DI  Y+  I+  G  G  E   GL     +  +
Sbjct: 195 IVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSLGI 254

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+V +T+ + A +      +   + +EM+ AG  PD      LI+A   + Q  Q   
Sbjct: 255 TPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQAVE 314

Query: 236 LVRTMHK 242
           ++ +M K
Sbjct: 315 ILESMPK 321



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 2/164 (1%)

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
           +TA +  G   +   +++ M   G++P+    N+ +  +G  GQ++    +L  M K   
Sbjct: 53  ITACANGGRWQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGL 112

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR--KKLYRRC 198
           + D  +YN  I+  G  G  E+ + L   +    ++P VVT+ S +AA +R     +R+ 
Sbjct: 113 SPDAISYNTAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQA 172

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           + + + M  AG  PD  T   LI AC    Q +Q  ++++ M K
Sbjct: 173 VALVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKK 216



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 2/179 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A A+  +M  +G+ P + S    + A+ + G       ++  M K+GL PD    N+
Sbjct: 62  WQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNT 121

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE--KMEGLFQSLPA 172
            ++  G  GQ E+ +E+++ M +      + TYN  I    RGG  +  +   L + +  
Sbjct: 122 AISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSL 181

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             + PD +T+ S + A  +   +++ L + + M   G   D       ISAC    Q E
Sbjct: 182 AGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWE 240



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 2/166 (1%)

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEK 162
           G++P     +  L    + G++++   +L  ME+      D+  Y+  I     GG  ++
Sbjct: 5   GIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQE 64

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              +   +P   ++P+V++  + + A+     ++  L I   M  AG  PD  +    IS
Sbjct: 65  AVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAIS 124

Query: 223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY 268
           A     Q EQ   L+  M +       + +N      +AR   GQ+
Sbjct: 125 ALGVAGQSEQAQELMSEMSRLGIEPTVVTYN-SAIAAIARGGGGQW 169


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 93/184 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F+EM    I PT++++  L+  + K   +++ E    +  K G+ PD  + N++++
Sbjct: 411 ALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALID 470

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  ++  ++L  M+      D  T+N L+  Y R   +E+ + L   +  + +KP
Sbjct: 471 GHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKP 530

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +++ + ++ YS++   +  LE+F+EM+  G  P   T   LI   S   + +    L+
Sbjct: 531 DHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELL 590

Query: 238 RTMH 241
           R M 
Sbjct: 591 REMQ 594



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 90/197 (45%), Gaps = 14/197 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + +EM+  G+ P + ++ + +  Y + GN  K   + ++M +  ++P      S
Sbjct: 373 IEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTS 432

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G+  +  + EE      K     DI  +N LI+ +   G I++   L + +   +
Sbjct: 433 LIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAK 492

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD VT+ + +  Y R++      ++ +EM + G  PD  +   LIS  S         
Sbjct: 493 VVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSK-------- 544

Query: 235 TLVRTMHKDMKTALPIY 251
                   DMK AL ++
Sbjct: 545 ------RGDMKDALEVF 555



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 86/183 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A  +EM   GI  ++ ++ LL+ A      + + E +I +M + G++PD    N  +N
Sbjct: 341 AFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQIN 400

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  +K   +   M + +    + TY  LI+++G+   + + E  F+    + + P
Sbjct: 401 GYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLP 460

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++ + + +  +       R  ++ +EM +A   PD  T   L+     E ++E+   L+
Sbjct: 461 DIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLL 520

Query: 238 RTM 240
             M
Sbjct: 521 DEM 523



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 84/182 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+EEM ++ I  ++ +  +++    + G   K +  I  M   G+KP+    N+++N Y 
Sbjct: 204 VYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYC 263

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+FE   ++   M+  +   D  TYN  I+   +   IE+  G+   L    L P+ V
Sbjct: 264 LRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAV 323

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + +     K    +     +EM++ G      T  +LI A   E +IE+   +++ M
Sbjct: 324 TYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEM 383

Query: 241 HK 242
            +
Sbjct: 384 RE 385



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 83/178 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +F+ MK   + P   ++   ++   K   + +  GV+ ++ +SGL P+    N+
Sbjct: 268 FEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNA 327

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++     G  +K       M      A + TYN+LI+       IE+ E + + +  K 
Sbjct: 328 LIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKG 387

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           ++PDVVT+  ++  Y R    ++ L +F+EM++    P   T   LI      +++ +
Sbjct: 388 VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSE 445



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 84/199 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V  ++   G+ P   ++  L+      G++ K     ++M   G+    F  N 
Sbjct: 303 IEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNL 362

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++      + E+ E+++  M +     D+ TYNI IN Y R G  +K   LF  +  K 
Sbjct: 363 LIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKN 422

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P V T+TS +  + ++       E F++ I  G  PD      LI        I++  
Sbjct: 423 IRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAF 482

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L++ M         + FN
Sbjct: 483 QLLKEMDNAKVVPDEVTFN 501



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 82/175 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A   F++  + G+ P +     L+  +   GN+ +   ++ +M  + + PD    N++
Sbjct: 444 SEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTL 503

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y R  + E+ +++L  M++     D  +YN LI+ Y + G ++    +F  + +   
Sbjct: 504 MQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGF 563

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            P ++T+ + +  YS+        E+  EM   G  PD  T   +I A  + D +
Sbjct: 564 DPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDL 618



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 24/238 (10%)

Query: 2   KKPQC----TTC-DLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFS 56
           + P C    T C  LC+  R P        P PS F ++  +L   TP +     S+   
Sbjct: 89  RHPHCLDLNTRCITLCILYRLPS-------PKPS-FHILQPILHTTTPTVIFNELSL--- 137

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
                     RL +  T+    LLL+AY +     +    +N M ++ + P T   NS+L
Sbjct: 138 -------ARNRLNVKTTL-VFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLL 189

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +L  +L + +    V   M K +  + I T+NI+INI  R G  +K +     +    +K
Sbjct: 190 SLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVK 249

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           P+VVT+ + +  Y  +  +    +IF+ M D    PD  T    IS    E +IE+ +
Sbjct: 250 PNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEAS 307


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 91/185 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +FEEM+   I P + ++  L+    K G ++    ++++MH  G  P+    NS+
Sbjct: 367 DEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSI 426

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +    +K   +LT ++      D+ TY +LI    + G +E  + +F+ L  K  
Sbjct: 427 LDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGY 486

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             DV T+T  +  +  K L+   L +  +M D GC P+  T +++I +   +D+ +    
Sbjct: 487 NLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEK 546

Query: 236 LVRTM 240
           L+R M
Sbjct: 547 LLREM 551



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 101/223 (45%), Gaps = 3/223 (1%)

Query: 43  TPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N  ++ F I     +A  +  +M    I P M +  +L+ A+ K G V + + ++   
Sbjct: 247 TCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVT 306

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            K  +  D    NS+++ Y  + +  K +++  +M      A++ +Y  +IN   +   +
Sbjct: 307 MKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMV 366

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++   LF+ +  +++ P+VVT+ S +    +       L++ +EM D G  P+  T   +
Sbjct: 367 DEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSI 426

Query: 221 ISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARS 263
           + A      +++   L+  + KD      +Y      KG+ +S
Sbjct: 427 LDALCKNHHVDKAIALLTNL-KDQGIRPDMYTYTVLIKGLCQS 468



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 87/186 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  ++ +M    I+P   +   L+  +   G + +  G++++M    + P  +  + +
Sbjct: 227 NDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSIL 286

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+ ++ + +L    K     D+ TYN L++ Y     I K + +F S+ ++ +
Sbjct: 287 VDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGV 346

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             +V ++T+ +    + K+    + +FEEM      P+  T   LI       +I  V  
Sbjct: 347 IANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLK 406

Query: 236 LVRTMH 241
           LV  MH
Sbjct: 407 LVDEMH 412



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 98/239 (41%), Gaps = 21/239 (8%)

Query: 13  VAQR-APHSWNFNYLPYPSHFM--------LINFLLLQH-TPNLFVF-IFSIYFSDAHAV 61
           VA+R +P  +  N L Y    M        L++ ++L++  P ++ F I    F     V
Sbjct: 237 VAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKV 296

Query: 62  FEEMKRLGITPTMKSHMLL--------LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            E    LG+T  MK  ++L        +  Y     + K + + + M   G+  +     
Sbjct: 297 KEAKMMLGVT--MKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYT 354

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M+N   ++   ++   +   M       ++ TYN LI+  G+ G I  +  L   +  +
Sbjct: 355 TMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDR 414

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
              P+++T+ S L A  +     + + +   + D G  PD  T  VLI       ++E 
Sbjct: 415 GQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLED 473



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 80/184 (43%), Gaps = 3/184 (1%)

Query: 60  AVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  + +KR+    + P    + +++    K   V     + +QM    + PD F  NS++
Sbjct: 193 AALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLI 252

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +  +GQ ++   +L  M   +    + T++IL++ + + G +++ + +      K + 
Sbjct: 253 YGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDII 312

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DVVT+ S +  Y   K   +  +IF+ M   G   +  +   +I+       +++   L
Sbjct: 313 LDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNL 372

Query: 237 VRTM 240
              M
Sbjct: 373 FEEM 376



 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 35/196 (17%), Positives = 83/196 (42%), Gaps = 1/196 (0%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +VF ++ + G  P   +   L+      G++ +     +++   G   D     +++N  
Sbjct: 126 SVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGL 185

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++G+     ++L  ++      +   YN++I+   +   +     L+  + AKR+ PD 
Sbjct: 186 CKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDD 245

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-R 238
            T  S +  +      +  + +  +MI     P   T  +L+ A   E ++++   ++  
Sbjct: 246 FTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGV 305

Query: 239 TMHKDMKTALPIYFNL 254
           TM KD+   +  Y +L
Sbjct: 306 TMKKDIILDVVTYNSL 321


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 88/186 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  EM    I P ++++ +L+ A  K G V + + V+  M K+ +KPD F  N+
Sbjct: 498 LKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNT 557

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y  + + +K + V  AM       D+ TY ILIN + +   +++   LF+ +  K 
Sbjct: 558 LMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKN 617

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD VT++S +    +        ++ +EM D G   D  T   LI        +++  
Sbjct: 618 MVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAI 677

Query: 235 TLVRTM 240
            L   M
Sbjct: 678 ALFNKM 683



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 94/198 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A+ +F EM   GI+  + ++  L+  +   G + +  G++N+M    + PD      +
Sbjct: 464 SEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTIL 523

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++  G+ G+ ++ + VL  M K     D+ TYN L+N Y     ++K + +F ++    +
Sbjct: 524 VDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGV 583

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+T  +  + + K+    L +F+EM      PD  T   L+       +I  V  
Sbjct: 584 TPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWD 643

Query: 236 LVRTMHKDMKTALPIYFN 253
           L+  M    + A  I +N
Sbjct: 644 LIDEMRDRGQPADVITYN 661



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 93/186 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M  +G+TP + ++ +L+  + K+  V +   +  +MH+  + PDT   +S+++
Sbjct: 571 AQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVD 630

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+   + +++  M      AD+ TYN LI+   + G ++K   LF  +  + ++P
Sbjct: 631 GLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRP 690

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+T  L    +    +   E+F++++  G + D     V+I     +  +E+  T++
Sbjct: 691 NTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTML 750

Query: 238 RTMHKD 243
             M ++
Sbjct: 751 SKMEEN 756



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 98/200 (49%), Gaps = 5/200 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A+ +F EM   GI+  + ++  L+  +   G + +  G++N M    + P+    N +
Sbjct: 150 SEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNIL 209

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+ ++ + VL  M K    +++ TY+ L++ Y     ++K + +F ++    +
Sbjct: 210 VDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGV 269

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV ++   +  + + K   + L +F+EMI +   P     K+L     S  +++  +T
Sbjct: 270 TPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKIL----DSFAKMKHYST 325

Query: 236 LVRTMHK-DMKTALPIYFNL 254
            V   H+ ++K   P  F L
Sbjct: 326 AVSLSHRLELKGIQPDLFTL 345



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 81/171 (47%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P ++ +  ++ A  K   V++  G+ ++M   G+  D    ++++  +  +G+ ++   +
Sbjct: 445 PNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGL 504

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           L  M   +   D+ TY IL++  G+ G +++ + +   +    +KPDV T+ + +  Y  
Sbjct: 505 LNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLL 564

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
               ++   +F  M   G  PD  T  +LI+       +++   L + MH+
Sbjct: 565 VYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQ 615



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           I P + ++ +L+ A  K G V + + V+  M K+ +K +    +++++ Y  + + +K +
Sbjct: 199 INPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQ 258

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            V  AM       D+ +YNI+IN + +   ++K   LF+ +   R  P ++ +   L ++
Sbjct: 259 HVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP-IIQFNKILDSF 317

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           ++ K Y   + +   +   G  PD  T  +LI+      QI
Sbjct: 318 AKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQI 358



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 70/149 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G    + ++  L+    K G++ K   + N+M   G++P+TF    +L+   
Sbjct: 644 LIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLC 703

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ +  +EV   +    Y  D+  YN++I  + + G +E+   +   +      P+ V
Sbjct: 704 KGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAV 763

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           T+   + A  +K    +  ++  +MI  G
Sbjct: 764 TFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A A+F +MK  GI P   +  +LL    K G +   + V   +   G   D ++ N
Sbjct: 672 HLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYN 731

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M+  + + G  E+   +L+ ME+     +  T++I+IN   +    +K E L + + A+
Sbjct: 732 VMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIAR 791

Query: 174 RL 175
            L
Sbjct: 792 GL 793



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 35/224 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++S A ++   ++  GI P + +  +L+  +   G +     V+ ++ K G  P T  +N
Sbjct: 322 HYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLN 381

Query: 114 SMLNLYGRLGQFEK---MEEVLTA----MEKGSYAA------------------------ 142
           +++      GQ +K     + L A    + + SYA                         
Sbjct: 382 TLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGR 441

Query: 143 ----DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               ++  Y+ +I+   +   + +  GLF  +  K +  DVVT+++ +  +      +  
Sbjct: 442 LTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEA 501

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           + +  EM+     PD  T  +L+ A   E ++++  +++  M K
Sbjct: 502 IGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLK 545



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/169 (16%), Positives = 81/169 (47%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P ++ +  ++ A  K   V++  G+ ++M   G+  +    ++++  +  +G+ ++   +
Sbjct: 131 PNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGL 190

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           L  M   +   ++ TYNIL++   + G +++ + +   +    +K +V+T+++ +  Y  
Sbjct: 191 LNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFL 250

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
               ++   +F  M   G  PD  +  ++I+      ++++   L + M
Sbjct: 251 VYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299



 Score = 41.6 bits (96), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 49/202 (24%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM----------------- 100
           A  VF  M  +G+TP + S+ +++  + K   V K   +  +M                 
Sbjct: 257 AQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDS 316

Query: 101 --------------HK---SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                         H+    G++PD F +N ++N +  +GQ      VL  + K  Y   
Sbjct: 317 FAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPS 376

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-------KKLYR 196
             T N LI      G ++K       L A+  + + V++ + +    +        KL R
Sbjct: 377 TVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLR 436

Query: 197 RC--------LEIFEEMIDAGC 210
           +         +E++  +IDA C
Sbjct: 437 KIDGRLTKPNVEMYSTIIDALC 458



 Score = 40.4 bits (93), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 30/183 (16%), Positives = 77/183 (42%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V  ++ + G  P   +   L+      G V +     +++   G + +     +++N  
Sbjct: 49  SVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGV 108

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            R+G      + L  ++      ++  YN +I+   +   + +  GLF  +  K +  +V
Sbjct: 109 CRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANV 168

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+++ +  +      +  L +   M+     P+  T  +L+ A   E ++++  +++  
Sbjct: 169 VTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAV 228

Query: 240 MHK 242
           M K
Sbjct: 229 MLK 231



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/148 (19%), Positives = 65/148 (43%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           S+  L+    K G+      ++ ++     KP+  + +++++   +     +   + + M
Sbjct: 414 SYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEM 473

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
                +AD+ TY+ LI  +   G +++  GL   +  K + PDV T+T  + A  ++   
Sbjct: 474 TVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKV 533

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +    +   M+ A   PD  T   L++ 
Sbjct: 534 KEAKSVLAVMLKACVKPDVFTYNTLMNG 561


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 6/202 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F++M  +G+ P   ++  L+  Y   G++ +     ++M K G+ P     N 
Sbjct: 259 LEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNL 318

Query: 115 MLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +++   + GR+G+ + M   +  M K     D  TYNILIN Y R G  ++   L   + 
Sbjct: 319 LVHALFMEGRMGEADDM---IKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEML 375

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +K ++P  VT+TS +   SR+   +   ++FE+++D G  PD      +I    +   +E
Sbjct: 376 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVE 435

Query: 232 QVTTLVRTMHKDMKTALPIYFN 253
           +   L++ M +       + FN
Sbjct: 436 RAFMLLKEMDRKSVPPDEVTFN 457



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 93/208 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + M+  GI P   ++  L++   K G + +  G+ ++M + GL P+    N++++
Sbjct: 227 ARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 286

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E+       M K      +STYN+L++     G + + + + + +  K + P
Sbjct: 287 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 346

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+   +  YSR    +R  ++  EM+  G  P   T   LI   S  +++++   L 
Sbjct: 347 DAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 406

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSNL 265
             +     +   I FN   +   A  N+
Sbjct: 407 EKILDQGVSPDVIMFNAMIDGHCANGNV 434



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 4/201 (1%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +EM + GI P++ ++ LL+ A    G + + + +I +M K G+ PD    N ++N Y R 
Sbjct: 302 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRC 361

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  ++  ++   M          TY  LI +  R   +++ + LF+ +  + + PDV+ +
Sbjct: 362 GNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMF 421

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + +  +       R   + +EM      PD  T   L+     E ++E+   L+  M  
Sbjct: 422 NAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKX 481

Query: 243 DMKTALPIYFNL----YGEKG 259
                  I +N     YG +G
Sbjct: 482 RGIKPDHISYNTLISGYGRRG 502



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM   GI PT  ++  L+   S+   + + + +  ++   G+ PD  + N+M++
Sbjct: 367 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMID 426

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  E+   +L  M++ S   D  T+N L+    R G +E+   L   +  + +KP
Sbjct: 427 GHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKP 486

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +++ + ++ Y R+   +    + +EM+  G  P   T   LI       + +    L+
Sbjct: 487 DHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELL 546

Query: 238 RTM 240
           + M
Sbjct: 547 KEM 549



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 80/167 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + +EM++ GI P   ++ +L+  YS+ GN  +   + N+M   G++P      S++
Sbjct: 331 EADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLI 390

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +  R  + ++ +++   +     + D+  +N +I+ +   G +E+   L + +  K + 
Sbjct: 391 YVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVP 450

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD VT+ + +    R+        + +EM   G  PD  +   LIS 
Sbjct: 451 PDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISG 497



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 71/167 (42%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G + K    I  M   G KP+    N++++ Y   G  E    +L AM       D  TY
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 246

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
             LI+   + G +E+  GLF  +    L P+ VT+ + +  Y  K    R     +EM+ 
Sbjct: 247 GSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 306

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
            G  P   T  +L+ A   E ++ +   +++ M K       I +N+
Sbjct: 307 KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNI 353



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 87/191 (45%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + +T  ++V        +A  +FE++   G++P +     ++  +   GNV +   ++ +
Sbjct: 384 VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKE 443

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  + PD    N+++    R G+ E+   +L  M+      D  +YN LI+ YGR G 
Sbjct: 444 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGD 503

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I+    +   + +    P ++T+ + +    + +      E+ +EM++ G  PD  T   
Sbjct: 504 IKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLS 563

Query: 220 LISACSSEDQI 230
           LI    + D +
Sbjct: 564 LIEGMGNVDTL 574


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA  V E MK  G  P + ++  L+  +   G V K   ++N+M   G+ PD    N 
Sbjct: 162 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 221

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G  E    +L  ME     AD  TYN LIN   + G  ++   LF SL  + 
Sbjct: 222 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 281

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-ACSSEDQIEQV 233
           +KP+ VT+ S +    +        +  E+M+ AGC PD  T    I   C  +   E +
Sbjct: 282 IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGL 341

Query: 234 TTLVRTMHKDMK 245
           + +   + KD+K
Sbjct: 342 SFIGEMLQKDVK 353



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 73/181 (40%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +   MK LG  P+ +++  ++    +     + E ++ +M + GL P      +++N Y 
Sbjct: 98  MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYC 157

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+      VL  M+      ++ TYN L+  +   G + K   L   + A  + PD V
Sbjct: 158 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAV 217

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +              +   M   G   D  T   LI+A   + + +Q  +L  ++
Sbjct: 218 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 277

Query: 241 H 241
            
Sbjct: 278 E 278



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 35/231 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M+  G+ P   ++ LL+      G++     ++  M   GL  D +  N+++N
Sbjct: 200 AMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALIN 259

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-------FIEKM------- 163
              + G+ ++   +  ++E      +  T+N LIN   + G       F+EKM       
Sbjct: 260 ALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTP 319

Query: 164 -------------------EGL--FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
                              EGL     +  K +KP  V +T  +    +++ Y      +
Sbjct: 320 DTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTW 379

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            EM+ +GC PD  T    + A   E ++ +   ++  M K+  T   + +N
Sbjct: 380 GEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYN 430



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 67/148 (45%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M + G +P T    ++++   R  + ++ EE+L  M +   A  + T   +IN Y 
Sbjct: 98  MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYC 157

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +     + + +  +  KP+V T+ + +  +  +    + + +  +M   G  PD  
Sbjct: 158 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAV 217

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKD 243
           T  +LI     +  IE    L+R M  D
Sbjct: 218 TYNLLIRGQCIDGHIESAFRLLRLMEGD 245



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 18/180 (10%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM   G  P + ++   + AY   G + + E V+ +M K+G+  DT   N++++ +  +G
Sbjct: 381 EMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIG 440

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           Q +    +L  M   +   +  TY IL+                + L   RL  DV+  T
Sbjct: 441 QTDHAVSILKQMTSVASVPNQFTYFILL----------------RHLVRMRLVEDVLPLT 484

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
              A   +         +F+ M      P+ GT   ++   S + + E+ T+LV  M +D
Sbjct: 485 P--AGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKED 542



 Score = 40.0 bits (92), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 35/174 (20%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +SG +PD +  NS++  Y R  Q +   ++   M    +A D+ +Y  LI      G 
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 160 IEKMEGLFQSLPA--------------------------KRLKPDVVTWTSRLAAYS--- 190
           I++   LF  +                            +R+K   + W     AY+   
Sbjct: 61  IDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKE--LGWRPSTRAYAAVV 118

Query: 191 ----RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
               R++  +   E+ +EM + G  P   T   +I+A   E ++     ++  M
Sbjct: 119 DFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELM 172


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 100/200 (50%), Gaps = 1/200 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F ++K  G++PT+ ++  L+  YSK  N+A    ++ +M +  + P       +++ + 
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFA 414

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           RL   EK  E+ + MEK     D+ TY++L++     G +++   LF+SL    L+P+ V
Sbjct: 415 RLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSV 474

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-ACSSEDQIEQVTTLVRT 239
            + + +  Y ++    R L +  EM+ +G  P+  +    I   C  E   E    L + 
Sbjct: 475 IYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQM 534

Query: 240 MHKDMKTALPIYFNLYGEKG 259
           ++  +K ++ +Y  ++  KG
Sbjct: 535 INSGLKPSVSLYKMVHKVKG 554



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 83/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F +M RLG+ P   ++ +L+  + K G   +   +   M +SG+ P+ +  N +++
Sbjct: 212 AKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLIS 271

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  +K  +V   M +   A  + TYNILI    RG    +   L   +    L P
Sbjct: 272 EYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSP 331

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++VT+   +  +   +     + +F ++  +G  P   T   LI+  S  + +     LV
Sbjct: 332 NIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLV 391

Query: 238 RTMHK 242
           + M +
Sbjct: 392 KEMEE 396



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 95/208 (45%), Gaps = 13/208 (6%)

Query: 43  TPNLFVF--IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN + +  + S Y +D     A  VF EM+  GI   + ++ +L+    +     +   
Sbjct: 260 VPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVK 319

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++++++K GL P+    N ++N +  + + +    +   ++    +  + TYN LI  Y 
Sbjct: 320 LVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYS 379

Query: 156 RGGFIEKMEG---LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +   +E + G   L + +  + + P  VT+T  + A++R     +  E+   M  +G  P
Sbjct: 380 K---VENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVP 436

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           D  T  VL+        +++ + L +++
Sbjct: 437 DVYTYSVLLHGLCVHGNMKEASKLFKSL 464



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 77/170 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF     +   ++  G++P +  +  L+    K GNV   + +  +M++ GL P+    +
Sbjct: 173 YFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYS 232

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N + + G   +  ++   M++     +   YN LI+ Y   G ++K   +F  +  K
Sbjct: 233 VLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREK 292

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +   V+T+   +    R K +   +++  ++   G  P+  T  +LI+ 
Sbjct: 293 GIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILING 342



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 34/197 (17%), Positives = 83/197 (42%), Gaps = 1/197 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L + I S YF  A  +F E+K   +     S  +++    + G   K   ++  + + GL
Sbjct: 131 LCLLIRSNYFDKAWWIFNELKS-KVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGL 189

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+  +  ++++   + G     + +   M +     +  TY++L+N + + G   +   
Sbjct: 190 SPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQ 249

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +++++    + P+   +   ++ Y    +  +  ++F EM + G      T  +LI    
Sbjct: 250 MYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC 309

Query: 226 SEDQIEQVTTLVRTMHK 242
              +  +   LV  ++K
Sbjct: 310 RGKKFGEAVKLVHKVNK 326



 Score = 38.1 bits (87), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 75/184 (40%), Gaps = 1/184 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           ++ S     A      M   G  P   +   LL    ++    K   + N++ KS +  D
Sbjct: 99  YVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNEL-KSKVVLD 157

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            +    M+      G F K   +L  +E+   + ++  Y  LI+   + G +   + LF 
Sbjct: 158 AYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFC 217

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +    L P+  T++  +  + ++ L R   +++E M  +G  P+      LIS   ++ 
Sbjct: 218 KMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDG 277

Query: 229 QIEQ 232
            +++
Sbjct: 278 MVDK 281


>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 680

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 109/228 (47%), Gaps = 11/228 (4%)

Query: 41  QHTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           ++TP++F +       + +  F  AH +F+EM++  + P   ++  L+T++ K G     
Sbjct: 152 KYTPSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSA 211

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
              + +M +  +  D  + ++++ L  RL  + K   + + +++     D+  YN +IN+
Sbjct: 212 LSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINV 271

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+    ++   L + +    + P+ V++++ L+ Y     +   L +F EM +  C  D
Sbjct: 272 YGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLD 331

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIY---FNLYGE 257
             T  ++I      D +++   L  ++ K D++  +  Y     +YGE
Sbjct: 332 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGE 379



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 99/187 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR GITP + ++  ++  Y K     +   +I +M+++G+ P+T   ++
Sbjct: 243 YSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYST 302

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++Y    +F +   V   M++ +   D++T NI+I++YG+   +++ + LF SL    
Sbjct: 303 LLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMD 362

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VV++ + L  Y   +L+   + +F  M       +  T   +I       + E+ T
Sbjct: 363 IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKAT 422

Query: 235 TLVRTMH 241
            LV+ M 
Sbjct: 423 NLVQEMQ 429



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP+L  +  + ++Y     F +A  + +EM   G++P   S+  LL+ Y +     +   
Sbjct: 259 TPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALS 318

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V  +M +     D    N M+++YG+L   ++ + +  ++ K     ++ +YN ++ +YG
Sbjct: 319 VFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYG 378

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
                 +   LF+ +  K ++ +VVT+ + +  Y +   + +   + +EM   G  P+  
Sbjct: 379 EAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAI 438

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
           T   +IS      ++++  TL + + 
Sbjct: 439 TYSTIISIWGKAGKLDRAATLFQKLR 464



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 99/238 (41%), Gaps = 38/238 (15%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  +  I  +Y     F +A  +F  M+R  I   + ++  ++  Y KT    K   +
Sbjct: 365 PNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNL 424

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M   G++P+    +++++++G+ G+ ++   +   +       D   Y  +I  Y R
Sbjct: 425 VQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYER 484

Query: 157 GGFIEKMEGLFQSLP--------------AKRLKPDVVTWTSRLA--------------- 187
            G +   + L   L               AK    +  TW  R A               
Sbjct: 485 VGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFESGEVKDISVFGCM 544

Query: 188 --AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
              YSR + Y   +E+FE+M  AG +PD     ++++A   + + E+  T+ R M ++
Sbjct: 545 INLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREMQEE 602



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 89/178 (50%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V++ +  F +A +VF EMK +     + +  +++  Y +   V + + +   + K  +
Sbjct: 304 LSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDI 363

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+    N++L +YG    F +   +   M++     ++ TYN +I IYG+    EK   
Sbjct: 364 EPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 423

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L Q + ++ ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 424 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 481



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 81/172 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  ++++ I P + S+  +L  Y +     +   +   M +  ++ +    N+M+
Sbjct: 350 EADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMI 409

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 410 KIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVE 469

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            D V + + + AY R  L      +  E+      P      +L  A S+E+
Sbjct: 470 IDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEE 521



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 35/219 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+  GI P   ++  +++ + K G + +   +  ++  SG++ D  +  +M+ 
Sbjct: 421 ATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIV 480

Query: 118 LYGRLGQFEKMEEVL--------------------------------TAMEKGSYAADIS 145
            Y R+G     + +L                                 A E G    DIS
Sbjct: 481 AYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFESGE-VKDIS 539

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            +  +IN+Y R      +  +F+ +      PD       L AY +++ + +   ++ EM
Sbjct: 540 VFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREM 599

Query: 206 IDAGC-YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            + GC +PD    ++L S  SS+   E V +L   +  D
Sbjct: 600 QEEGCVFPDEVHFQML-SLYSSKKDFEMVESLFERLESD 637



 Score = 38.5 bits (88), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLY 119
           VFE+M+  G  P   +  ++L AY K     K + V  +M + G + PD  V   ML+LY
Sbjct: 560 VFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDE-VHFQMLSLY 618

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
                FE +E +   +E          + ++  +Y R 
Sbjct: 619 SSKKDFEMVESLFERLESDPNVNSKELHLVVAALYERA 656


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 100/205 (48%), Gaps = 1/205 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F +M   G +    ++  L+    K  N+ +   ++ +M   G  PD    N++L+   
Sbjct: 136 LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLC 195

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R+G+  + ++   +M    Y+ D+  YN L++   + G  ++   LF+ + AK   PD V
Sbjct: 196 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTV 255

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ S L   +RK       E+F++M+ +GC P+G T  +++S      +++    ++  M
Sbjct: 256 TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEM 315

Query: 241 HKDMKTALPIYFNLYGEKGVARSNL 265
            K       + +N+  + G+ ++NL
Sbjct: 316 SKIGAVPDVVTYNILLD-GLCKTNL 339



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 8/206 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN + F   +          D + +FE+M   GI+P    + +L+  Y+K G V +   
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IY 154
           +  +M   GL+P  +  NS+LN + +  + ++  E+   M +  +  D+ TY+ +I+ + 
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
             G   E +E LF  +  +    + V + + +    + +   R  ++ EEM   G  PD 
Sbjct: 125 KTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDN 184

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
            T   ++S      ++ +      +M
Sbjct: 185 ITYNTILSGLCRMGKVSEAKQFFDSM 210



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 87/199 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A   F+ M   G +P + ++  LL A  K G   +   +   +   G  PDT   NS+
Sbjct: 201 SEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSI 260

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L    R    ++ EE+   M     A + +TY+I+++ + R   ++    + + +     
Sbjct: 261 LLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGA 320

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDVVT+   L    +  L  +  E+F  M+D GC PD  +  V+++     +++     
Sbjct: 321 VPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARV 380

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L   M +       + FN+
Sbjct: 381 LFDRMIERKLVPDVVTFNI 399



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 83/188 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F++M   G  P   ++ ++L+ + +   V     V+ +M K G  PD    N 
Sbjct: 270 MDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNI 329

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   +    +K  E+ + M     A DI +Y++++N   +   +     LF  +  ++
Sbjct: 330 LLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK 389

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PDVVT+   +    +        ++ ++M  +GC PD      L++    + +  Q  
Sbjct: 390 LVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQAD 449

Query: 235 TLVRTMHK 242
            L + M +
Sbjct: 450 RLTQAMKE 457



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 82/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + EEM   G  P   ++  +L+   + G V++ +   + M   G  PD    N +L+
Sbjct: 168 AYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLD 227

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  ++   +    Y  D  TYN ++    R   +++ E +F+ + A    P
Sbjct: 228 ALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAP 287

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T++  L+ + R K      ++ EEM   G  PD  T  +L+      + +++   L 
Sbjct: 288 NGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELF 347

Query: 238 RTM 240
            TM
Sbjct: 348 STM 350



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 84/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+++   G  P   ++  +L   ++  N+ + E +  +M  SG  P+    + +
Sbjct: 236 DEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIV 295

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ + R  + +   +VL  M K     D+ TYNIL++   +   ++K   LF ++     
Sbjct: 296 LSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGC 355

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+V+++  L    +         +F+ MI+    PD  T  +L+       ++++   
Sbjct: 356 APDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKD 415

Query: 236 LVRTM 240
           L+  M
Sbjct: 416 LLDQM 420



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 70/158 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DAH V EEM ++G  P + ++ +LL    KT  V K   + + M  +G  PD    + +
Sbjct: 306 DDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVV 365

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LN   +  +      +   M +     D+ T+NIL++   + G +++ + L   +     
Sbjct: 366 LNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGC 425

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            PD V + + +    ++  + +   + + M + G   D
Sbjct: 426 APDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 1/148 (0%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           P+ +    +L  + + G+     ++   M     + D   YNILI+ Y + G +++   L
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CS 225
           ++ + +  L+P + T+ S L A+ ++   +  +E+F+ M + G  PD  T   +IS  C 
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125

Query: 226 SEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           +    E +  L   M +   +A  + +N
Sbjct: 126 TGKVTEALEMLFHKMIERGCSANTVAYN 153


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 93/184 (50%), Gaps = 1/184 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+ +    +A+  F  ++  G T ++ +   L+ +  + G V     +  ++ +SG+  +
Sbjct: 165 FVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVN 224

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            + +N M+N   + G+ EK+   L+ +++     DI TYN LI+ Y   G +E+   L  
Sbjct: 225 VYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMH 284

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSE 227
           ++P+K   P V T+ + +    +   Y R  E+F EM+ +G  PD  T + +L+ AC   
Sbjct: 285 AMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 344

Query: 228 DQIE 231
           D +E
Sbjct: 345 DAVE 348



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  VF EM R G++P   ++  LL    K G+  + E + + M    + PD    +S
Sbjct: 311 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSS 370

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++L+ R G  +K      ++++     D   Y ILI  Y R G I +   L   +  + 
Sbjct: 371 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQG 430

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              DVVT+ + L    ++K+     ++F EM + G +PD  T  +LI        ++   
Sbjct: 431 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAM 490

Query: 235 TLVRTMHK 242
            L + M +
Sbjct: 491 ELFKKMKE 498



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 87/179 (48%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
             E++  G+ P + ++  L++AYS  G + +   +++ M   G  P  +  N+++N   +
Sbjct: 248 LSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCK 307

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G++E+ +EV   M +   + D +TY  L+    + G   + E +F  + ++ + PD+V 
Sbjct: 308 HGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVC 367

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++S ++ ++R     + L  F  + +AG  PD     +LI     +  I +   L   M
Sbjct: 368 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEM 426



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 2/177 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ +M    I PT  S  +L+ A    G++++   V ++M    +KP   + NSM+ 
Sbjct: 524 AKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIK 583

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--L 175
            Y R G     E  L  M    +  D  +YN LI  + +   + K  GL + +  K+  L
Sbjct: 584 GYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGL 643

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            PDV T+ S L  + R+   +    +  +MI+ G  PD  T   LI+   S+D + +
Sbjct: 644 VPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTE 700



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 86/198 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EM   G+ P   +  +L+  + K GN+     +  +M +  +K D    N+
Sbjct: 451 LGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNT 510

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ +G++G  +  +E+   M          +++IL+N     G + +   ++  + +K 
Sbjct: 511 LLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKS 570

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP V+   S +  Y R           E+MI  G  PD  +   LI     E+ + +  
Sbjct: 571 IKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAF 630

Query: 235 TLVRTMHKDMKTALPIYF 252
            LV+ M +     +P  F
Sbjct: 631 GLVKKMEEKQGGLVPDVF 648



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++E+ R G+   + +  +++ A  K G + K    ++++ + G+ PD    N++++
Sbjct: 209 AWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLIS 268

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E+  E++ AM    ++  + TYN +IN   + G  E+ + +F  +    L P
Sbjct: 269 AYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSP 328

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D  T+ S L    +K        IF +M      PD
Sbjct: 329 DSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPD 364



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 79/184 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +   M   G +P + ++  ++    K G   + + V  +M +SGL PD+    S+L
Sbjct: 278 EAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 337

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               + G   + E + + M       D+  ++ +++++ R G ++K    F S+    L 
Sbjct: 338 MEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLI 397

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD V +T  +  Y RK +    + +  EM+  GC  D  T   ++        + +   L
Sbjct: 398 PDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 457

Query: 237 VRTM 240
              M
Sbjct: 458 FNEM 461



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 12/167 (7%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + S+A  V++EM    I PT+     ++  Y ++GN +  E  + +M   G  PD    N
Sbjct: 555 HLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYN 614

Query: 114 SML-------NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           +++       N+    G  +KMEE     ++G    D+ TYN +++ + R   +++ E +
Sbjct: 615 TLIYGFVKEENMSKAFGLVKKMEE-----KQGGLVPDVFTYNSILHGFCRENQMKEAEAV 669

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            + +  + + PD  T+TS +  +  +          +EM+  G  PD
Sbjct: 670 LRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 78/158 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +  EM + G    + ++  +L    K   + + + + N+M + GL PD++ +  
Sbjct: 416 ISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTI 475

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + +LG  +   E+   M++     D+ TYN L++ +G+ G I+  + ++  + +K 
Sbjct: 476 LIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 535

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           + P  ++++  + A   K        +++EMI     P
Sbjct: 536 ILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKP 573



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 84/185 (45%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           +F  S     A   F  +K  G+ P    + +L+  Y + G +++   + N+M + G   
Sbjct: 374 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAM 433

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D    N++L+   +     + +++   M +     D  T  ILI+ + + G ++    LF
Sbjct: 434 DVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELF 493

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +  KR+K DVVT+ + L  + +        EI+ +M+     P   +  +L++A  S+
Sbjct: 494 KKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSK 553

Query: 228 DQIEQ 232
             + +
Sbjct: 554 GHLSE 558



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/198 (19%), Positives = 85/198 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   +F +M+   + P +     +++ ++++GN+ K     N + ++GL PD  +   ++
Sbjct: 348 ETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILI 407

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y R G   +   +   M +   A D+ TYN +++   +   + + + LF  +  + L 
Sbjct: 408 QGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLF 467

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T T  +  + +    +  +E+F++M +     D  T   L+        I+    +
Sbjct: 468 PDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEI 527

Query: 237 VRTMHKDMKTALPIYFNL 254
              M        PI F++
Sbjct: 528 WADMVSKEILPTPISFSI 545



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 25/231 (10%)

Query: 10  DLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLG 69
           DL + QR      FN+ P   H        L  +  + + + S   SDA +    M R  
Sbjct: 81  DLSLGQRFVDQLGFNF-PNFKH------TSLSLSAMIHILVRSGRLSDAQSCVLRMIRRS 133

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
               ++    L++ YS  G+                  +  V + ++  + +  +  +  
Sbjct: 134 GVSRVEIVNSLVSTYSNCGS------------------NDSVFDLLIRTFVQARKLREAY 175

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           E  T +    Y   I   N LI    R G++E    ++Q +    +  +V T    + A 
Sbjct: 176 EAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNAL 235

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +     +      E+ + G YPD  T   LISA SS+  +E+   L+  M
Sbjct: 236 CKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAM 286


>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
          Length = 790

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 83/165 (50%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SD H ++E+MK+ G +P + S+ +L++++ + G V +   +  ++  S  KPD    NS+
Sbjct: 518 SDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSL 577

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  G+ G  ++       M +   + D+ TY+ LI  +G+   +E    LF  + A+  
Sbjct: 578 INCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGC 637

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            P++VT+   L    R       ++++ ++   G  PD  T  VL
Sbjct: 638 SPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 682



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 74/143 (51%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +L+A  K    +    +  +M + G  PD F  N +++ +GR G+ E+  ++   +E  S
Sbjct: 507 VLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSS 566

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              DI ++N LIN  G+ G I++    F+ +  + L PDVVT+++ +  + +        
Sbjct: 567 CKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMAC 626

Query: 200 EIFEEMIDAGCYPDGGTAKVLIS 222
            +F+EM+  GC P+  T  +L+ 
Sbjct: 627 RLFDEMLAEGCSPNIVTYNILLD 649



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           ++M +L +    G   +   +++++H+  +  DT + N++L+  G+L +   + ++   M
Sbjct: 468 AYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKM 527

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
           ++   + DI +YNILI+ +GR G +E+   +F+ L     KPD++++ S +    +    
Sbjct: 528 KQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDI 587

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                 F+EM + G  PD  T   LI      D++E    L   M
Sbjct: 588 DEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEM 632



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 105/242 (43%), Gaps = 33/242 (13%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           T N+ + IF    +D    F+ +K+  +     ++  LL A+ ++ N  K   V  ++ +
Sbjct: 195 TINILIGIFG-GGADVERCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRR 253

Query: 103 SGLKPDTFVINSMLNLYGRLG-----------QFEKMEEVLTA----------------- 134
            G K D F  N +L+   +             Q  ++ + LT                  
Sbjct: 254 RGYKLDIFAYNMLLDALAKDNKLTWNLLLVCLQIAELLDCLTVALDNDKIISVEVDQVYM 313

Query: 135 ----MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
               M++     D  TY I+I + G+ G  ++   LFQ +  K   P+++ + + + A +
Sbjct: 314 VFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALA 373

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
             ++  + + +F +M++  C P+G T  V+++   +E Q+ ++  +V   +K M  ++  
Sbjct: 374 NNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYA 433

Query: 251 YF 252
           Y 
Sbjct: 434 YL 435



 Score = 44.3 bits (103), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 31/169 (18%), Positives = 73/169 (43%), Gaps = 8/169 (4%)

Query: 80  LLTAYSKTGNVAKCEGVIN-----QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA 134
           L+   SK G+ ++   +++       H  G   D     SML      G+  +  ++L+ 
Sbjct: 435 LVRTLSKLGHASEAHRLLHLQYDWSFHDEG---DRDAYMSMLESLCDAGKTTEALDLLSK 491

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           + +   + D   YN +++  G+      +  L++ +      PD+ ++   ++++ R   
Sbjct: 492 IHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGR 551

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
               ++IFEE+ ++ C PD  +   LI+       I++     + M ++
Sbjct: 552 VEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREE 600



 Score = 37.7 bits (86), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           + + +  +L  ME+      IST NILI I+G G  +E+    F  +    L+ +  T+ 
Sbjct: 173 RLDLIRAILDDMERCGVRGSISTINILIGIFGGGADVER---CFDLVKKWDLQMNCYTYK 229

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
             L A+ R     +  E++ E+   G   D     +L+ A + ++++
Sbjct: 230 CLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKL 276



 Score = 37.4 bits (85), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 49/273 (17%), Positives = 94/273 (34%), Gaps = 69/273 (25%)

Query: 50  IFSIYFSDAHAVFEEMKR-----------------------------------LGITPTM 74
           I S+     + VF++MKR                                    G TP +
Sbjct: 303 IISVEVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNL 362

Query: 75  KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA 134
            ++  ++ A +    V K   + ++M ++  +P+ F  + +LN+    GQ  +++EV+  
Sbjct: 363 IAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEV 422

Query: 135 ----MEKGSYA------------------------------ADISTYNILINIYGRGGFI 160
               M K  YA                               D   Y  ++      G  
Sbjct: 423 SNKFMNKSIYAYLVRTLSKLGHASEAHRLLHLQYDWSFHDEGDRDAYMSMLESLCDAGKT 482

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            +   L   +  KR+  D V + + L+A  + K      +++E+M   G  PD  +  +L
Sbjct: 483 TEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNIL 542

Query: 221 ISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           IS+     ++E+   +   +         I FN
Sbjct: 543 ISSFGRAGRVEEAVKIFEELENSSCKPDIISFN 575


>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AV E+MK    TP + S   LL AY KTGN  K E + + M  SG  P+    NS+L+
Sbjct: 402 AVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLS 461

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +  Q++++   +   E+     D+  ++  I+   + G  +  E   + +     +P
Sbjct: 462 AYEKGRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQP 521

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++VT++S + AY    L+ +   +F+ M+  G  PD      L+ A +   Q+++V    
Sbjct: 522 NIVTYSSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFF 581

Query: 238 RTM 240
            +M
Sbjct: 582 DSM 584



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           ++  + + M   G  P ++++  LL AY KT N  +    +  + + G  PD    +S+L
Sbjct: 331 ESLGLLQAMIEQGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLL 390

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 GQ EK   V+  M++ ++  ++ ++  L+  Y + G  EK E +F S+      
Sbjct: 391 GACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCP 450

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ V W S L+AY + + ++R L   E+  + G   D       ISA +   Q +     
Sbjct: 451 PNEVAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAEKK 510

Query: 237 VRTMHK 242
           +R M +
Sbjct: 511 IRQMKQ 516



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 35/211 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH---------------- 101
           A  +FEEMK LG+ P   +   L++A +  G     +  IN M                 
Sbjct: 262 AVELFEEMKELGLAPDNITFRGLVSATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQW 321

Query: 102 -------------------KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
                              + G +P     N++L  Y +   +E+    +  +++  +  
Sbjct: 322 ACARARNSRESLGLLQAMIEQGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTP 381

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D  T++ L+      G  EK   + + +      P+VV+W   L AY +   + +  EIF
Sbjct: 382 DFITWSSLLGACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIF 441

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             M+++GC P+      L+SA     Q ++V
Sbjct: 442 HSMLNSGCPPNEVAWNSLLSAYEKGRQWKRV 472



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 78/173 (45%), Gaps = 2/173 (1%)

Query: 71  TPTMKSHML--LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            P  K H L  L+     + ++   E ++  +H++GL+ D   +N ++   G++  ++  
Sbjct: 133 APNDKLHNLAKLVAVRVASEDLGSDEDIMGVVHETGLRVDVRSMNVVVWQLGQMRNWDAA 192

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             V  A    S   +      LI + G G  + +   LF+ +  + ++  + T+ + + A
Sbjct: 193 SRVFRAFRSASVEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEKQGIERPIYTFNALMVA 252

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             R       +E+FEEM + G  PD  T + L+SA ++  + +   + +  M 
Sbjct: 253 CGRCGAGDTAVELFEEMKELGLAPDNITFRGLVSATTAAGKWKAAQSFINLMQ 305



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/187 (18%), Positives = 80/187 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M++ GI   + +   L+ A  + G       +  +M + GL PD      ++
Sbjct: 226 EALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLV 285

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +     G+++  +  +  M+ G ++  I  +  +     R     +  GL Q++  +  +
Sbjct: 286 SATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGCE 345

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +  + + L AY +   +   +     + + G  PD  T   L+ AC++  Q E+   +
Sbjct: 346 PRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEKAVAV 405

Query: 237 VRTMHKD 243
           +  M ++
Sbjct: 406 MEKMKEN 412



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVIN 113
           ++ A +VF+ M   GI P  K+   LL AY+K   + K     + M  + G+KPD +   
Sbjct: 539 WNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDSMMPRYGIKPDKYAYA 598

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
           ++       G++++  + +  ME      D   Y  LI +Y   G ++K
Sbjct: 599 AIFWACWTCGEWQRAADYMENMEAAGCTPDTMIYTTLITMYEAHGQVDK 647



 Score = 41.2 bits (95), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 5/214 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  VF   +   + P       L+        + +   +   M K G++   +  N+
Sbjct: 189 WDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEKQGIERPIYTFNA 248

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   GR G  +   E+   M++   A D  T+  L++     G  +  +     + A  
Sbjct: 249 LMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLVSATTAAGKWKAAQSFINLMQAGG 308

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ-V 233
               +  +T    A +R +  R  L + + MI+ GC P       L+ A       E+ V
Sbjct: 309 FSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGCEPRLENYNALLCAYEKTANWEEAV 368

Query: 234 TTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
            T+V    K        + +L G    A +N GQ
Sbjct: 369 RTVVWIQEKGFTPDFITWSSLLG----ACANAGQ 398



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 33/72 (45%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M R GI P   ++  +  A    G   +    +  M  +G  PDT +  +++ +Y   GQ
Sbjct: 585 MPRYGIKPDKYAYAAIFWACWTCGEWQRAADYMENMEAAGCTPDTMIYTTLITMYEAHGQ 644

Query: 125 FEKMEEVLTAME 136
            +K  E+L  M+
Sbjct: 645 VDKAMEILKKMD 656


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 100/200 (50%), Gaps = 1/200 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F ++K  G++PT+ ++  L+  YSK  N+A    ++ +M +  + P       +++ + 
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFA 414

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           RL   EK  E+ + MEK     D+ TY++LI+     G +++   LF+SL    L+P+ V
Sbjct: 415 RLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSV 474

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-ACSSEDQIEQVTTLVRT 239
            + + +  Y ++    R L +  EM+ +G  P+  +    I   C  E   E    L + 
Sbjct: 475 IYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQM 534

Query: 240 MHKDMKTALPIYFNLYGEKG 259
           ++  +K ++ +Y  ++  KG
Sbjct: 535 INSGLKPSVSLYKMVHKVKG 554



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 88/187 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   ++E MKR GI P   ++  L++ Y   G V K   V  +M + G+       N ++
Sbjct: 246 EGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILI 305

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  +F +  +++  + K   + +I TYNILIN +   G ++    LF  L +  L 
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLS 365

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +VT+ + +A YS+ +     L++ +EM +    P   T  +LI A +  +  E+   +
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEM 425

Query: 237 VRTMHKD 243
              M K 
Sbjct: 426 HSLMEKS 432



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F +M RLG+ P   ++ +L+  + K G   +   +   M +SG+ P+ +  N +++
Sbjct: 212 AKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLIS 271

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  +K  +V   M +   A  + TYNILI    RG    +   L   +    L P
Sbjct: 272 EYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSP 331

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++VT+   +  +         + +F ++  +G  P   T   LI+  S  + +     LV
Sbjct: 332 NIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLV 391

Query: 238 RTMHK 242
           + M +
Sbjct: 392 KEMEE 396



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 87/186 (46%), Gaps = 6/186 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM+  GI   + ++ +L+    +     +   ++++++K GL P+    N ++N
Sbjct: 282 AFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILIN 341

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG---LFQSLPAKR 174
            +  +G+ +    +   ++    +  + TYN LI  Y +   +E + G   L + +  + 
Sbjct: 342 GFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSK---VENLAGALDLVKEMEERC 398

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P  VT+T  + A++R     +  E+   M  +G  PD  T  VLI        +++ +
Sbjct: 399 IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEAS 458

Query: 235 TLVRTM 240
            L +++
Sbjct: 459 KLFKSL 464



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 77/170 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF     +   ++  G++P +  +  L+    K GNV   + +  +M + GL P+    +
Sbjct: 173 YFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYS 232

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N + + G   +  ++   M++     +   YN LI+ Y  GG ++K   +F  +  K
Sbjct: 233 VLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREK 292

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +   V+T+   +    R K +   +++  ++   G  P+  T  +LI+ 
Sbjct: 293 GIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILING 342



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/195 (16%), Positives = 83/195 (42%), Gaps = 1/195 (0%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           + I S YF  A  +F E+K   +     S  +++    + G   K   ++  + + GL P
Sbjct: 133 LLIRSNYFDKAWWIFNELKS-KVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSP 191

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +  +  ++++   + G     + +   M++     +  TY++L+N + + G   +   ++
Sbjct: 192 NVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMY 251

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           +++    + P+   +   ++ Y    +  +  ++F EM + G      T  +LI      
Sbjct: 252 ENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRG 311

Query: 228 DQIEQVTTLVRTMHK 242
            +  +   LV  ++K
Sbjct: 312 KKFGEAVKLVHKVNK 326


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 1/207 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFE +   G+ PT   +  L+  Y +  ++     +  QM    ++PD    N+++N
Sbjct: 353 AKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 412

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +L    K E+++  MEK      + T+N LI+ YG  G +EK   +   +  K +K 
Sbjct: 413 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 472

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV+++ S + A+ +       + I ++MI     P+      +I A       EQ   LV
Sbjct: 473 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLV 532

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSN 264
             M     +A  + +NL   KG+ RS+
Sbjct: 533 EKMKNSGVSASIVTYNLL-LKGLCRSS 558



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V  +M++ GI   + S   ++ A+ K G + +   +++ M    + P+  V NS+++ Y 
Sbjct: 461 VLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI 520

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G  E+   ++  M+    +A I TYN+L+    R   I++ E L  +L  + L+PDVV
Sbjct: 521 ESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 580

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + ++A   K    + LE+ +EM   G  P   T   L+SA +S  ++  +  L + M
Sbjct: 581 SYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQM 640

Query: 241 -HKDMKTALPIY 251
            HK+++ +  IY
Sbjct: 641 LHKNVEPSSSIY 652



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 87/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE+MK   I P   ++  L+    K   V K E ++ +M KSG+ P     N++++
Sbjct: 388 AFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 447

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG  GQ EK   VL+ M++    +D+ ++  ++  + + G I +   +   +  K + P
Sbjct: 448 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 507

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   + S + AY       + L + E+M ++G      T  +L+       QI++   L+
Sbjct: 508 NAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 567

Query: 238 RTMH 241
            T+ 
Sbjct: 568 YTLR 571



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 4/204 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++F E  + G+     +  +LL    K G VAK + V   +  +GL P T + N+++N Y
Sbjct: 320 SLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGY 379

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++        +   M+      D  TYN LIN   +   + K E L   +    + P V
Sbjct: 380 CQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSV 439

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVR 238
            T+ + + AY       +C  +  +M   G   D  +   ++ A C +    E V  L  
Sbjct: 440 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 499

Query: 239 TMHKDMKTALPIY---FNLYGEKG 259
            ++KD+     +Y    + Y E G
Sbjct: 500 MIYKDVAPNAQVYNSIIDAYIESG 523



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 72/149 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+MK  G++ ++ ++ LLL    ++  + + E +I  +   GL+PD    N++++   
Sbjct: 531 LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACC 590

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G  +K  E+L  M K      + T + L++     G +  ME L+Q +  K ++P   
Sbjct: 591 NKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSS 650

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +   + AY R +   +   + +EM + G
Sbjct: 651 IYGIMVDAYVRCENDSKVASLKKEMSEKG 679



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 79/180 (43%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           ++M   G  P + ++ +LL+   +TG + +   ++++M    + PD F  + + +   R 
Sbjct: 253 DQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRT 312

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G+ + M  +     K        T +IL+N   + G + K + +F+ L    L P  V +
Sbjct: 313 GESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIY 372

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + +  Y + +  R    IFE+M      PD  T   LI+     + + +   LV  M K
Sbjct: 373 NTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEK 432



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/186 (17%), Positives = 82/186 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+ ++M    + P  + +  ++ AY ++G+  +   ++ +M  SG+       N +L
Sbjct: 492 EAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLL 551

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  Q ++ EE++  +       D+ +YN +I+     G  +K   L Q +    ++
Sbjct: 552 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 611

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P + T  + ++A +          ++++M+     P      +++ A    +   +V +L
Sbjct: 612 PTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASL 671

Query: 237 VRTMHK 242
            + M +
Sbjct: 672 KKEMSE 677



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/186 (17%), Positives = 78/186 (41%), Gaps = 5/186 (2%)

Query: 53  IYFSDAHAVFEEMKRLGIT-----PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           +   D       ++R+G +     P   S+ +++    ++G  +    V ++M   G+ P
Sbjct: 168 VAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAP 227

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +    N+M++ + + G  E    +   M       ++ TYN+L++   R G +++   L 
Sbjct: 228 NRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALM 287

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             + +  + PD  T++      +R    +  L +F E +  G      T  +L++    +
Sbjct: 288 DEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKD 347

Query: 228 DQIEQV 233
            ++ + 
Sbjct: 348 GKVAKA 353



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 2/171 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P++ S  LLL +    G  A        +  +G +PDTF  N ++      G  +    +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 132 LTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           L  M   +G+   D  +YN++I    R G       +F  +    + P+ +T+ + +  +
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGH 239

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +         + ++M+  G  P+  T  VL+S      ++++   L+  M
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEM 290



 Score = 38.9 bits (89), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/127 (19%), Positives = 57/127 (44%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S    +A  +   ++  G+ P + S+  +++A    G+  K   ++ +M+K G++P    
Sbjct: 557 SSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRT 616

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            +++++     G+   ME +   M   +     S Y I+++ Y R     K+  L + + 
Sbjct: 617 CHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMS 676

Query: 172 AKRLKPD 178
            K +  D
Sbjct: 677 EKGIAFD 683


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + + ++M R G  PT+ ++  L+ +Y +   +     V NQM K+G +PD     +
Sbjct: 354 FVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCT 413

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G      E+   M+    + D  TY+++IN  G+ G +   + LF  +  + 
Sbjct: 414 LIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQG 473

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +A  ++ + Y+  L+++ +M +AG  PD  T  +++        +++  
Sbjct: 474 CVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAE 533

Query: 235 TLVRTM-HKDMKTALPIY---FNLYGEKG 259
            +   M  K+     P+Y    +L+G+ G
Sbjct: 534 AIFSEMKRKNWVPDEPVYGLLVDLWGKAG 562



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 90/190 (47%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+ F +   I       + + A  +F EM   G  P + ++ +++   +K  N      
Sbjct: 440 SPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALK 499

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M  +G +PD    + ++ + G  G  ++ E + + M++ ++  D   Y +L++++G
Sbjct: 500 LYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWG 559

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +EK    +Q++    L P+V T  S L+A+ R         + + M++ G  P   
Sbjct: 560 KAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQ 619

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 620 TYTLLLSCCT 629



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 35/222 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y +DA  VF +M++ G  P   ++  L+  ++K G +     +  +M  +GL PDTF  +
Sbjct: 388 YLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYS 447

Query: 114 SMLNLYGRLGQFEKMEEVLTAM-----------------------------------EKG 138
            M+N  G+ G     +++   M                                   +  
Sbjct: 448 VMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNA 507

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            +  D  TY+I++ + G  G++++ E +F  +  K   PD   +   +  + +     + 
Sbjct: 508 GFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKA 567

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            E ++ M+ AG  P+  T   L+SA    +++     L+++M
Sbjct: 568 WEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSM 609



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 59/119 (49%)

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G K D +   +M+ + GR  QF  + ++L  M +      + TYN LI+ YGR  ++   
Sbjct: 333 GFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDA 392

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
             +F  +     +PD VT+ + +  +++       +E+++ M  AG  PD  T  V+I+
Sbjct: 393 VEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMIN 451


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 89/181 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+EM    I P + ++  L+    K G ++    ++++MH  G+ PD    +S+
Sbjct: 354 DEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSI 413

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +  Q +K   +LT ++      ++ TY ILI+   +GG +E    +F+ L  K  
Sbjct: 414 LDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGY 473

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
              V T+T  +  +  K L+   L +  +M D  C PD  T +++I +   +D+ ++   
Sbjct: 474 NITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEK 533

Query: 236 L 236
           L
Sbjct: 534 L 534



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 43  TPNLFVF--IFSIYFS-----DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN+  +  + S +F+     DA  +F +M    I P + +  +L+  + K G + + + 
Sbjct: 229 SPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKT 288

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V   M K G+KP+     S+++ Y  + +  K + +L  M +     DI +YNILI+ + 
Sbjct: 289 VFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFC 348

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   +++   LF+ +  K + PDVVT+ S +    +       L++ +EM D G  PD  
Sbjct: 349 KIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDII 408

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   ++ A     Q+++   L+  +
Sbjct: 409 TYSSILDALCKNHQVDKAIALLTKL 433



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 81/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   VF  M + GI P + ++  L+  Y     V K + ++  M + G+ PD    N ++
Sbjct: 285 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILI 344

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + ++ + ++   +   M       D+ TYN LI+   + G I     L   +  + + 
Sbjct: 345 DGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVP 404

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD++T++S L A  +     + + +  ++ D G  P+  T  +LI       ++E    +
Sbjct: 405 PDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNI 464

Query: 237 VRTM 240
              +
Sbjct: 465 FEDL 468



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/188 (19%), Positives = 88/188 (46%), Gaps = 3/188 (1%)

Query: 57  DAHAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  A  + ++R+    + P +  +  ++    K  +V     + ++M   G+ P+    +
Sbjct: 177 ETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYS 236

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ +  +GQ +   ++   M   +   D+ T+NIL++ + + G +++ + +F  +  +
Sbjct: 237 ALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQ 296

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +KP+VVT+ S +  Y   K   +   I   M   G  PD  +  +LI       ++++ 
Sbjct: 297 GIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEA 356

Query: 234 TTLVRTMH 241
             L + MH
Sbjct: 357 MNLFKEMH 364



 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/139 (15%), Positives = 65/139 (46%)

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G + D     ++++   ++G+     ++L  ++      ++  Y+ +I+   +   +   
Sbjct: 157 GFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDA 216

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             L+  + +K + P+VVT+++ ++ +      +  +++F +MI     PD  T  +L+  
Sbjct: 217 FDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDG 276

Query: 224 CSSEDQIEQVTTLVRTMHK 242
              + ++++  T+   M K
Sbjct: 277 FCKDGKMKEGKTVFAMMMK 295


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 97/199 (48%), Gaps = 3/199 (1%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           HTP   +        D     + ++ +G  P + ++  L+ A+++   + +   ++ +M 
Sbjct: 28  HTP---IITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMR 84

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G  P+    N +++   +L      ++V+  M +G +A ++ T+N L++ + + G ++
Sbjct: 85  ERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVD 144

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
               L   + AK ++P+VVT+++ +    + + +    E+ EEM  +G  PD  T   LI
Sbjct: 145 DARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALI 204

Query: 222 SACSSEDQIEQVTTLVRTM 240
                 D+IE+   ++R M
Sbjct: 205 HGLCKADKIEEAEQMLRRM 223



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S  F +A  V EEMK  G+TP   ++  L+    K   + + E ++ +M  SG  PD  V
Sbjct: 175 SQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 234

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL- 170
            +S+++ + + G+  + ++ L  M K   + D+ TYN +I+   + G I + + +   + 
Sbjct: 235 YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQ 294

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            +  + PDVVT+++ +    +  +     ++ + M  AGC PD  T   +I       ++
Sbjct: 295 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRL 354

Query: 231 EQVTTLVRTMHK 242
           E+   L++ M +
Sbjct: 355 EEAEYLLQGMKR 366



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 102/206 (49%), Gaps = 8/206 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP++ V+   I+         +A    +EM++   +P + ++  ++    K G +A+ + 
Sbjct: 229 TPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQV 288

Query: 96  VINQMHKSG-LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           +++QM +SG + PD    ++++N   +     + +++L  M K     D+ TY  +I+  
Sbjct: 289 ILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGL 348

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G +E+ E L Q +      P+VVT+T+ ++   + +       + EEM +AGC P+ 
Sbjct: 349 CKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNL 408

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
            T   +++      +I++   LV+ M
Sbjct: 409 VTYNTMVNGLCVSGRIKEAQQLVQRM 434



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 94/189 (49%), Gaps = 3/189 (1%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            ++A  + ++M+  G + P + ++  ++    K+  + + + ++++M K+G  PD     
Sbjct: 283 IAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYT 342

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   + G+ E+ E +L  M++   A ++ TY  LI+   +   +++ E + + +   
Sbjct: 343 TIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNA 402

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIE 231
              P++VT+ + +         +   ++ + M D  A C PD  T + +++A  S D ++
Sbjct: 403 GCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQ 462

Query: 232 QVTTLVRTM 240
           +   L+  M
Sbjct: 463 EAEQLLEQM 471



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 98/217 (45%), Gaps = 4/217 (1%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +T  +  F  +    +A  + EEM+  G  P + ++ +L+ A  K   V   + V+ 
Sbjct: 57  VVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVK 116

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRG 157
           +M + G  P+    NS+++ + + G  +   ++L  M       ++ TY+ LI+ +    
Sbjct: 117 KMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ 176

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
            F+E  E + + + A  + PD  T+++ +    +        ++   M  +GC PD    
Sbjct: 177 KFLEAKE-VLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 235

Query: 218 KVLISA-CSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
             +I A C S   +E   TL + M K  K+   + +N
Sbjct: 236 SSIIHAFCKSGKLLEAQKTL-QEMRKQRKSPDVVTYN 271



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 1/189 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +   M   G+ P + ++  L+    K+    + + V+ +M  SG+ PD F  ++
Sbjct: 143 VDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSA 202

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  + E+ E++L  M       D+  Y+ +I+ + + G + + +   Q +  +R
Sbjct: 203 LIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR 262

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIEQV 233
             PDVVT+ + +    +         I ++M ++G   PD  T   +I+     D + + 
Sbjct: 263 KSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEA 322

Query: 234 TTLVRTMHK 242
             L+  M K
Sbjct: 323 QKLLDRMCK 331



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 81/185 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V ++M   G  P + +   L+  + K GNV     ++  M   G++P+    +++++
Sbjct: 111 AQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALID 170

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +F + +EVL  M+      D  TY+ LI+   +   IE+ E + + +      P
Sbjct: 171 GLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTP 230

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV ++S + A+ +        +  +EM      PD  T   +I       +I +   ++
Sbjct: 231 DVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVIL 290

Query: 238 RTMHK 242
             M +
Sbjct: 291 DQMQE 295


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + + +EM R G  P   ++  L+ +Y +   + +   V NQM ++G KPD     +
Sbjct: 380 FGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCT 439

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +   ++   M+ G  + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 440 LIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +  +++ + Y+  L+++ +M +AG  PD  T  +++        +E+  
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559

Query: 235 TLVRTM-HKDMKTALPIY---FNLYGEKG 259
            +   M  K+     P+Y    +L+G+ G
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAG 588



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 91/190 (47%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+ F +   I       +   AH +F EM   G TP + ++ +++  ++K  N      
Sbjct: 466 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALK 525

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M  +G +PD    + ++ + G  G  E+ E V T M++ ++  D   Y +L++++G
Sbjct: 526 LYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWG 585

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +EK    +Q++    L P+V T  S L+ + R        E+ + M+  G  P   
Sbjct: 586 KAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQ 645

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 646 TYTLLLSCCT 655



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/187 (18%), Positives = 87/187 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +++ M+  G++P   ++ +++    K G++     +  +M   G  P+    N
Sbjct: 449 FLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M++L+ +   ++   ++   M+   +  D  TY+I++ + G  G++E+ E +F  +  K
Sbjct: 509 IMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PD   +   +  + +     +  + ++ M+ AG  P+  T   L+S     ++I + 
Sbjct: 569 NWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEA 628

Query: 234 TTLVRTM 240
             L++ M
Sbjct: 629 YELLQNM 635



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 78/187 (41%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y ++A  VF +M+  G  P   ++  L+  ++K G +     +  +M   GL PDTF  +
Sbjct: 414 YLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYS 473

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N  G+ G      ++   M       ++ TYNI+++++ +    +    L++ +   
Sbjct: 474 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNA 533

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PD VT++  +              +F EM      PD     +L+        +E+ 
Sbjct: 534 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593

Query: 234 TTLVRTM 240
               + M
Sbjct: 594 WQWYQAM 600



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 58/121 (47%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+   GR  QF  + ++L  M +     +  TYN LI+ YGR  ++ 
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F  +     KPD VT+ + +  +++       +++++ M   G  PD  T  V+I
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVII 476

Query: 222 S 222
           +
Sbjct: 477 N 477


>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 100/187 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR GITP + ++  ++  Y K     +   +I +M+++G+ P+T   ++
Sbjct: 109 YSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYST 168

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++Y    +F +   V   M++ + A D++T NI+I++YG+   +++ + LF SL    
Sbjct: 169 LLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMD 228

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VV++ + L  Y   +L+   + +F  M       +  T   +I       + E+ T
Sbjct: 229 IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKAT 288

Query: 235 TLVRTMH 241
            LV+ M 
Sbjct: 289 NLVQEMQ 295



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 108/228 (47%), Gaps = 11/228 (4%)

Query: 41  QHTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           ++TP++F +       + +  F  AH +F+EM++  + P   ++  L+T++ K G     
Sbjct: 18  KYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSA 77

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
              + +M +  +  D  + ++++ L  RL  + K   + + +++     D+  YN +IN+
Sbjct: 78  LSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINV 137

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+     +   L + +    + P+ V++++ L+ Y     +   L +F EM +  C  D
Sbjct: 138 YGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALD 197

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIY---FNLYGE 257
             T  ++I      D +++   L  ++ K D++  +  Y     +YGE
Sbjct: 198 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGE 245



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP+L  +  + ++Y     F +A  + +EM   G+ P   S+  LL+ Y +     +   
Sbjct: 125 TPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALS 184

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V  +M +     D    N M+++YG+L   ++ + +  ++ K     ++ +YN ++ +YG
Sbjct: 185 VFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYG 244

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
                 +   LF+ +  K ++ +VVT+ + +  Y +   + +   + +EM   G  P+  
Sbjct: 245 EAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAI 304

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
           T   +IS      ++++  TL + + 
Sbjct: 305 TYSTIISIWGKAGKLDRAATLFQKLR 330



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 38/238 (15%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  +  I  +Y     F +A  +F  M+R  I   + ++  ++  Y KT    K   +
Sbjct: 231 PNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNL 290

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M   G++P+    +++++++G+ G+ ++   +   +       D   Y  +I  Y R
Sbjct: 291 VQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYER 350

Query: 157 GGFIEKMEGLFQSLP--------------AKRLKPDVVTWTSRLA--------------- 187
            G +   + L   L               AK  + +  TW  R A               
Sbjct: 351 VGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCM 410

Query: 188 --AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
              YSR + Y   +E+FE+M  AG +PD     ++++A   + + E+  T+ R M ++
Sbjct: 411 INLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEE 468



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 89/178 (50%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V++ +  F +A +VF EMK +     + +  +++  Y +   V + + +   + K  +
Sbjct: 170 LSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDI 229

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+    N++L +YG    F +   +   M++     ++ TYN +I IYG+    EK   
Sbjct: 230 EPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 289

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L Q + ++ ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 290 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 347



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 85/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  ++++ I P + S+  +L  Y +     +   +   M +  ++ +    N+M+
Sbjct: 216 EADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMI 275

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 276 KIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVE 335

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD    +  I+  +   + E+ T +
Sbjct: 336 IDQVLYQTMIVAYERVGLMGHAKRLLHEL----KLPDNIPRETAITILAKAGRTEEATWV 391

Query: 237 VR 238
            R
Sbjct: 392 FR 393



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 35/219 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+  GI P   ++  +++ + K G + +   +  ++  SG++ D  +  +M+ 
Sbjct: 287 ATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIV 346

Query: 118 LYGRLGQFEKMEEVL--------------------------------TAMEKGSYAADIS 145
            Y R+G     + +L                                 A E G    DIS
Sbjct: 347 AYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGE-VKDIS 405

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            +  +IN+Y R      +  +F+ +      PD       L AY +++ + +   ++ EM
Sbjct: 406 VFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREM 465

Query: 206 IDAGC-YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            + GC +PD    ++L S  SS+   E V +L + +  D
Sbjct: 466 QEEGCVFPDEVHFQML-SLYSSKKDFEMVESLFQRLESD 503



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 2/117 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF +    G    +     ++  YS+         V  +M  +G  PD+ VI  +L
Sbjct: 387 EATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVL 446

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N YG+  +FEK + V   M E+G    D   + +L ++Y      E +E LFQ L +
Sbjct: 447 NAYGKQREFEKADTVYREMQEEGCVFPDEVHFQML-SLYSSKKDFEMVESLFQRLES 502



 Score = 37.0 bits (84), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLY 119
           VFE+M+  G  P      ++L AY K     K + V  +M + G + PD  V   ML+LY
Sbjct: 426 VFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDE-VHFQMLSLY 484

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
                FE +E +   +E          + ++  +Y R 
Sbjct: 485 SSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERA 522


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 92/186 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  EM R G++P++ ++  L+ +  K  N+ +     +QM   GL+P+     +
Sbjct: 335 FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 394

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + R G   +   +L  M +  ++  + TYN  I+ +     +E+  G+ Q +  K 
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 454

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PDVV++++ ++ + RK    R  ++ +EM++ G  PD  T   LI       ++ +  
Sbjct: 455 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 514

Query: 235 TLVRTM 240
            L + M
Sbjct: 515 DLSQEM 520



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F EM+R G  P + ++  L+ AY K G + +  G++  M   G++P+    N ++N   R
Sbjct: 237 FGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCR 296

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++  E+L  M    +  D  TYN L+N Y + G   +   +   +    + P VVT
Sbjct: 297 EGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVT 356

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +T+ + +  + +   R +E F++M   G  P+  T   LI   S +  + +   ++  M
Sbjct: 357 YTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 415



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 85/166 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V+ EM R  ++P + ++ +L+  +   G + K  G   +M ++G  P+    N++++
Sbjct: 198 AEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLID 257

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++G+ ++   +L +M       ++ +YN++IN   R G +++   + + +  K   P
Sbjct: 258 AYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTP 317

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D VT+ + L  Y ++  + + L I  EM+  G  P   T   LI++
Sbjct: 318 DEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 363



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 1/186 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F++M+  G+ P  +++  L+  +S+ G + +   ++N+M +SG  P     N+ ++
Sbjct: 373 AMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 432

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  L + E+   V+  M +   A D+ +Y+ +I+ + R G +++   + Q +  K + P
Sbjct: 433 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 492

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT++S +      +      ++ +EM+D G  PD  T   LI+A   E  + +   L 
Sbjct: 493 DAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLH 552

Query: 238 RTM-HK 242
             M HK
Sbjct: 553 DEMIHK 558



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 84/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + + M   G+ P + S+ +++    + G++ +   ++ +M   G  PD    N+
Sbjct: 265 IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 324

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN Y + G F +   +   M +   +  + TY  LIN   +   + +    F  +  + 
Sbjct: 325 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 384

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P+  T+T+ +  +SR+ L      I  EM ++G  P   T    I      +++E+  
Sbjct: 385 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 444

Query: 235 TLVRTM 240
            +V+ M
Sbjct: 445 GVVQEM 450



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 2/180 (1%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAK--CEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           K  G  P + S+  +L A  ++    K   E V  +M +S + P+ +  N ++  +  +G
Sbjct: 169 KSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVG 228

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           + +K       ME+     ++ TYN LI+ Y + G I++  GL +S+ +K ++P+++++ 
Sbjct: 229 ELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYN 288

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             +    R+   +   EI EEM   G  PD  T   L++    E    Q   +   M ++
Sbjct: 289 VIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN 348



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 87/183 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A+ +  EM   G +P++ ++   +  +     + +  GV+ +M + GL PD    ++
Sbjct: 405 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 464

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + R G+ ++  ++   M +   + D  TY+ LI        + +   L Q +    
Sbjct: 465 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 524

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD  T+T+ + AY  +    + L + +EMI  G  PD  T  VLI+  + + +  +  
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 584

Query: 235 TLV 237
            L+
Sbjct: 585 RLL 587



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 78/184 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + EEM   G TP   ++  LL  Y K GN  +   +  +M ++G+ P      +++
Sbjct: 302 EAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALI 361

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   +     +  E    M       +  TY  LI+ + R G + +   +   +      
Sbjct: 362 NSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFS 421

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P VVT+ + +  +   +     L + +EM++ G  PD  +   +IS    + ++++   +
Sbjct: 422 PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQM 481

Query: 237 VRTM 240
            + M
Sbjct: 482 KQEM 485



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 2/164 (1%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM--EEVLTAME 136
           L++ +YS    + +    IN    SG  P     NS+L+   R     K+  EEV   M 
Sbjct: 147 LMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMI 206

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           +   + ++ TYNILI  +   G ++K  G F  +      P+VVT+ + + AY +     
Sbjct: 207 RSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRID 266

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
               + + M   G  P+  +  V+I+    E  +++   ++  M
Sbjct: 267 EAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM 310



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 1/182 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V +EM   G+ P + S+  +++ + + G + +   +  +M + G+ PD    +S++
Sbjct: 442 EALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLI 501

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                + +  +  ++   M       D  TY  LIN Y   G + K   L   +  K   
Sbjct: 502 QGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFL 561

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT++  +   +++   R    +  ++I     P   T   LI  CS+  + + V  L
Sbjct: 562 PDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSN-IEFKSVVAL 620

Query: 237 VR 238
           ++
Sbjct: 621 IK 622



 Score = 41.6 bits (96), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 15/174 (8%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +EM   G++P   ++  L+    +   + +   +  +M   GL PD F   +++N Y   
Sbjct: 483 QEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVE 542

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G   K   +   M    +  D  TY++LIN   +     + + L   L  +   P  VT+
Sbjct: 543 GDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTY 602

Query: 183 ---------------TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
                           + +  +  K L      +FE M++    P      V+I
Sbjct: 603 DTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVII 656



 Score = 40.0 bits (92), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 55/121 (45%)

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G   + + V  +M + ++    + YN++I+ + RGG + K   L++ +      P  VT 
Sbjct: 628 GLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTV 687

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + + A  ++ +     E+  + + +    +   AKVL+     E  +E V  ++  M K
Sbjct: 688 ITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVLTDMAK 747

Query: 243 D 243
           D
Sbjct: 748 D 748



 Score = 38.1 bits (87), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 25/122 (20%), Positives = 52/122 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VFE M      P    + +++  + + GN+ K   +  +M  SG  P T  + +++
Sbjct: 632 EADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLI 691

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               + G  E+M EV+    +     +     +L+ I  + G +E +  +   +    L 
Sbjct: 692 KALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDGLL 751

Query: 177 PD 178
           P+
Sbjct: 752 PN 753


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 2/191 (1%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M R G  P   +   L+  +SK G    CE ++  M   G++P+    N +L    +L +
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 125 FEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           + + EE++  M    G    D+ TY+ L++ Y + G +E+   L + + ++ L+PD + +
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  +A+  +       LE+ EEMI AGC P   T   LIS C  E  +E   +L++TM  
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 243 DMKTALPIYFN 253
               A  + +N
Sbjct: 181 SGVKADVVTYN 191



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 69/143 (48%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           TP + ++  LL+ Y K G V +   ++ ++   GL+PD  +   ++    +  +  +  E
Sbjct: 79  TPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALE 138

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +L  M +      + T+N LI+   R   +E  + L Q++ A  +K DVVT+ + +    
Sbjct: 139 LLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLC 198

Query: 191 RKKLYRRCLEIFEEMIDAGCYPD 213
           +    +   ++ E M  +GC PD
Sbjct: 199 KAGRLQEAEQLLERMKASGCAPD 221



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +V E M R G  P + ++  L+    K G + +    + +M   G KP+     S++
Sbjct: 311 EARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLV 370

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAAD-----ISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +     G+  + E ++  M  G    D     +STYN LI    + G I+     FQ + 
Sbjct: 371 HGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMR 430

Query: 172 AKRLKPDVVTWTSRLAAYSR 191
           ++   PD V++++ +   +R
Sbjct: 431 SQGCDPDGVSYSTIVEGLAR 450



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 36/212 (16%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M R G  PT+ +   L++   +  N+   + ++  M  SG+K D    N++++   + G+
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGR 202

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            ++ E++L  M+    A D+  Y+  +    + G +     + + +      P+VVT+ +
Sbjct: 203 LQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNT 262

Query: 185 RLAAYSRKKLYRRCLEIFEEM----------------ID--------------------A 208
            L    +       LE+ E+M                +D                    A
Sbjct: 263 ILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARA 322

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           GC PD  T   L++      +IE+    VR M
Sbjct: 323 GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREM 354



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/207 (18%), Positives = 91/207 (43%), Gaps = 7/207 (3%)

Query: 41  QHTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           + TP+L  +  + S Y       ++  + +E+   G+ P    +  ++ +  K+  + + 
Sbjct: 77  RSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEA 136

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             ++ +M ++G  P     N++++   R    E  + +L  M      AD+ TYN L++ 
Sbjct: 137 LELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDG 196

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             + G +++ E L + + A    PDVV ++S +    +        ++ E+M D+   P+
Sbjct: 197 LCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPN 256

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTM 240
             T   ++       +I+    ++  M
Sbjct: 257 VVTYNTILDGLCKSGKIDTALEMMEQM 283



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 49  FIFSIYFS----DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS- 103
           F++ +  S    +AH V E+M+     P + ++  +L    K+G +     ++ QM  S 
Sbjct: 228 FVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSD 287

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G   +    +++++   +LG+ ++   V+ AM +     D+ TY+ L+N   + G IE+ 
Sbjct: 288 GCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEA 347

Query: 164 EGLFQSLPAKRLKPDVVTWTS 184
               + +  +  KP+ VT+ S
Sbjct: 348 VEAVREMAMEGCKPNAVTYCS 368


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 2/210 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +  EM+  G+ PT+++   L+ AY +TG + KC  V+++M ++GLKP+     S
Sbjct: 422 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 481

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + + G+  +   +L  M       +   YN +I+ Y   G  ++   L + + +  
Sbjct: 482 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 541

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P +VT+   +     +       EI   + +    PD  +   LISAC     I++  
Sbjct: 542 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 601

Query: 235 TLVRTMHK-DMKTALPIYFNLY-GEKGVAR 262
            L + MHK  +K+ +  Y  L  G  G  R
Sbjct: 602 DLQQRMHKYGIKSTVRTYHQLISGLGGAGR 631



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 86/199 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  V + +   G+ PT   +  L+  Y +TG +        QM    +KPD    N++
Sbjct: 353 SIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL 412

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +  +    +++L  M+       + T+N LI+ YGR G +EK   +   +    L
Sbjct: 413 INGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 472

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+VV++ S + A+ +       + I ++M      P+      +I A       +Q   
Sbjct: 473 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 532

Query: 236 LVRTMHKDMKTALPIYFNL 254
           LV  M  +  +   + +NL
Sbjct: 533 LVEKMKSNGISPSIVTYNL 551



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 84/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A + F +MK   I P   ++  L+    K   +   + ++ +M  +G+ P     N++++
Sbjct: 390 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 449

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR GQ EK   VL+ M++     ++ +Y  ++N + + G I +   +   +  K + P
Sbjct: 450 AYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLP 509

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   + + + AY       +   + E+M   G  P   T  +LI    ++ QI +   ++
Sbjct: 510 NAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 569

Query: 238 RTM 240
            ++
Sbjct: 570 NSL 572



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 13/224 (5%)

Query: 49  FIFSIYFS------DAHA---VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           F +SI F       D+ A   +F +  + G+T    +  +LL    K G V+  E V+  
Sbjct: 302 FTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 361

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +  +GL P   + N+++N Y + G+ E        M+      D  TYN LIN   +   
Sbjct: 362 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 421

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I   + L   +    + P V T+ + + AY R     +C  +  EM + G  P+  +   
Sbjct: 422 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS 481

Query: 220 LISA-CSSEDQIEQVTTLVRTMHKDMKTALPIY---FNLYGEKG 259
           +++A C +    E V  L    HKD+     +Y    + Y E G
Sbjct: 482 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHG 525



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 81/189 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +  A+ +EM    + P   ++ +L    S+ G+      +  +  K+G+    +  + 
Sbjct: 282 MGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSI 341

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN   + G+    EEVL ++           YN LIN Y + G +E     F  + ++ 
Sbjct: 342 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 401

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPD +T+ + +    + +      ++  EM D G  P   T   LI A     Q+E+  
Sbjct: 402 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 461

Query: 235 TLVRTMHKD 243
            ++  M ++
Sbjct: 462 IVLSEMQEN 470



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 24  NYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA 83
           + LP    +  I    ++H PN   FI            E+MK  GI+P++ ++ LL+  
Sbjct: 506 DVLPNAQVYNAIIDAYVEHGPNDQAFIL----------VEKMKSNGISPSIVTYNLLIKG 555

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                 +++ E +IN +    L PD    N++++     G  +K  ++   M K    + 
Sbjct: 556 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 615

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TY+ LI+  G  G + +ME L+Q +    + P        + AYS+     +  ++ +
Sbjct: 616 VRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRK 675

Query: 204 EMI 206
           EM+
Sbjct: 676 EML 678



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+EM    + P   ++  ++  + K G++     + +QM   GLKP+    N +L
Sbjct: 214 DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLL 273

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G+  +   +L  M       D  TY+IL +   R G  + M  LF     K LK
Sbjct: 274 SGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF----GKSLK 329

Query: 177 PDVV----TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
             V     T +  L    +        E+ + +++AG  P
Sbjct: 330 NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 369



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 1/182 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINS 114
           +D    F  +   G  P   +    + A    G++ +  G++ +M + G  P + F  N 
Sbjct: 142 ADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNV 201

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    R G+     EV   M + +   +  TYN +I+ + +GG +E    L   +    
Sbjct: 202 VIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHG 261

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKP+ +T+   L+   R         + +EM      PDG T  +L    S     + + 
Sbjct: 262 LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAML 321

Query: 235 TL 236
           +L
Sbjct: 322 SL 323



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 72/181 (39%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           ++M   G+ P   ++ +LL+   + G + +   ++++M    + PD F  + + +   R 
Sbjct: 255 DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 314

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  + M  +     K        T +IL+N   + G +   E + QSL    L P  V +
Sbjct: 315 GDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 374

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + +  Y +          F +M      PD  T   LI+     ++I     L+  M  
Sbjct: 375 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQD 434

Query: 243 D 243
           +
Sbjct: 435 N 435



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +   +    + P   S+  L++A    GN+ K   +  +MHK G+K      + 
Sbjct: 562 ISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQ 621

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G  G+  +ME +   M + +     + +NI++  Y + G   K E L + +  KR
Sbjct: 622 LISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKR 681

Query: 175 LKPD 178
              D
Sbjct: 682 NNHD 685



 Score = 37.7 bits (86), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 1/170 (0%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P++ S  LLL A    G  A        +  +G +PDTF  N  +      G   +   +
Sbjct: 123 PSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGM 182

Query: 132 LTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           L  M + G+   +  +YN++I    R G       +F  +  + + P+ +T+ + +  + 
Sbjct: 183 LRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHI 242

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +         + ++M+  G  P+  T  VL+S      ++ + + L+  M
Sbjct: 243 KGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 292


>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
 gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
          Length = 691

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 8/180 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VFEE      +  + S   ++TA S+  +      +  QM + GL+PD+FV++S+LN   
Sbjct: 463 VFEE----SCSDDIISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACA 518

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            L  +E+ ++V   + K  + +D+   N L+  Y + G IE  +  F  LP K     VV
Sbjct: 519 SLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYTYAKCGSIEDADMAFSGLPEK----GVV 574

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +W++ +   ++    +R LE+F  M+D G  P+  T   ++SAC+    ++       +M
Sbjct: 575 SWSAMIGGLAQHGHGKRALELFHRMLDEGVAPNNITLTSVLSACNHAGLVDDAKKYFESM 634



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 11/199 (5%)

Query: 31  HFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHML----LLTAYSK 86
           H + +   L+Q   ++FV    +       + +E KR+   P  + + +    +++AY K
Sbjct: 123 HALAVATRLIQ---DVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVK 179

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
                   GV  +M  SG +P+ F  + ++N       +E   +V   + +  Y  D+ T
Sbjct: 180 NDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFT 239

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
            N L+++Y + G IE    +F+ +PA     DVV+W + +A         R LE+  +M 
Sbjct: 240 ANALVDMYSKLGDIEMAAVVFEKIPA----ADVVSWNALIAGCVTHGHDHRALELLLQMK 295

Query: 207 DAGCYPDGGTAKVLISACS 225
             G  P+  T   ++ AC+
Sbjct: 296 PLGVVPNVFTLSSVLKACA 314



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 20/223 (8%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYF-SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA 91
           +L + LL  ++ +L  F       S A AVF+E+      P   S   L+TAYS  G   
Sbjct: 30  LLKSGLLASYSNHLLSFYSRCRLPSAARAVFDEIP----DPCHVSWSSLVTAYSNNGMPR 85

Query: 92  KCEGVINQMHKSGLKPDTFVINSMLNLYG--RLGQFEKMEEVLTAMEKGSYAADISTYNI 149
                   M   G+  + + +  +L      R G       V T + +     D+   N 
Sbjct: 86  DALWAFRSMRGRGVPCNEYALPIVLKCAPDVRFGAQVHALAVATRLIQ-----DVFVTNA 140

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           L+ +YG  G +++ + +F     +R   + V+W   ++AY +    R  + +F EM+ +G
Sbjct: 141 LVAMYGGFGMVDEAKRIFDEPGGER---NAVSWNGMISAYVKNDRCRDAVGVFREMVWSG 197

Query: 210 CYPDGGTAKVLISACSSEDQIE---QVTTL-VRTMH-KDMKTA 247
             P+      +++AC+     E   QV  + VRT + KD+ TA
Sbjct: 198 ERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTA 240



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           QM   G+ P+ F ++S+L      G F    ++   M K    +D      L+++Y + G
Sbjct: 293 QMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDG 352

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           F++    +F  +P    + D++ W + ++  S    +   L +F  M   G
Sbjct: 353 FLDDARKVFDFMP----RRDLILWNALISGCSHDGRHGEVLSLFHRMRKEG 399


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 89/196 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           + A A F  M   G+ P +++H +L+   SK G + +  GV +++   GL PD F   S+
Sbjct: 599 TKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSL 658

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G  +   E+   M K     +I TYN LIN   + G I K   LF  +P K L
Sbjct: 659 ISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGL 718

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             + VT+++ +A Y +        ++F  M   G  PD      LI  C      E+  +
Sbjct: 719 ARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALS 778

Query: 236 LVRTMHKDMKTALPIY 251
           L   M ++   + P +
Sbjct: 779 LFLGMVEEGIASTPAF 794



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 78/178 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A+ +F+EM   G+ P +  +  ++    K G   +   ++  M   GL PD F  N+
Sbjct: 458 LTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNT 517

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + G+ E+ +  L  M       ++ TY   I+ Y R G ++  E  F  +    
Sbjct: 518 VIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSG 577

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + P+ V  T  +  Y +     +    F  M+D G  PD  T  VLI   S   ++++
Sbjct: 578 IAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQE 635



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 15/202 (7%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM   G+ P + ++   +  Y + G +   E    +M  SG+ P+  +   +++ Y + G
Sbjct: 537 EMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDG 596

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
              K       M       D+ T+++LI+   + G +++  G+F  L  K L PDV T+T
Sbjct: 597 NTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYT 656

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           S ++   ++   +   E+ ++M   G  P+  T   LI+      +I +   L       
Sbjct: 657 SLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKAREL------- 709

Query: 244 MKTALPIYFNLYGEKGVARSNL 265
                   F+   EKG+AR+++
Sbjct: 710 --------FDGIPEKGLARNSV 723



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 4/190 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +   MK  G++P +  +  ++  + K G + + +  + +M   GLKP+ +   +
Sbjct: 493 FEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGA 552

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++ Y R G+ +  E     M     A +      LI+ Y + G   K    F+ +  + 
Sbjct: 553 FIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQG 612

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDV T +  +   S+    +  + +F E++D G  PD  T   LIS    E  ++   
Sbjct: 613 VLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAF 672

Query: 235 TLVRTMHKDM 244
            L    H DM
Sbjct: 673 EL----HDDM 678



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V EEM    I     ++  L+    K G++ K E + ++M   G+KPD    N ++ 
Sbjct: 356 AFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIE 415

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++   EK  E+L  ++K +  A+      ++N     G + +   LFQ + +  LKP
Sbjct: 416 GYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKP 475

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSSEDQIEQVTTL 236
           ++V +T+ +    ++  +   ++I   M D G  PD      V+I  C +    E  + L
Sbjct: 476 NIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYL 535

Query: 237 VRTMHKDMKTALPIY 251
           V  + K +K  +  Y
Sbjct: 536 VEMIAKGLKPNVYTY 550



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 35/191 (18%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-------------------CEGVIN 98
           A  +F EM  +GI P ++++  L+  Y K  N+ K                   C  ++N
Sbjct: 391 AEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVN 450

Query: 99  ----------------QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
                           +M   GLKP+  +  +++    + G+FE+  ++L  M+    + 
Sbjct: 451 GLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSP 510

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+  YN +I  + + G +E+ +     + AK LKP+V T+ + +  Y R    +     F
Sbjct: 511 DVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSF 570

Query: 203 EEMIDAGCYPD 213
            EM+D+G  P+
Sbjct: 571 IEMLDSGIAPN 581



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 96/235 (40%), Gaps = 37/235 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV--- 111
            + A  +F+ +   G+     ++  ++  Y K+ N+ +   + + M   G+ PD+FV   
Sbjct: 703 IAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCA 762

Query: 112 -------------------------------INSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
                                           N++++ + +LG+  +  +++  M     
Sbjct: 763 LIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHI 822

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             +  TY ILI  +   G I++ E LF  +  + + P+V+T+TS L  Y+R         
Sbjct: 823 TPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFS 882

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
           +F+EM+  G  PD     V++ A   E    +   LV  M   +   + +  NLY
Sbjct: 883 LFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDM---LSEGVNVCKNLY 934



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 88/185 (47%), Gaps = 1/185 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F  M   GI  T  +   L+  + K G + +   ++  M  + + P+      ++ 
Sbjct: 776 ALSLFLGMVEEGIAST-PAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIE 834

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  +G  ++ E++   M+K +   ++ TY  L++ Y R G   +M  LF  + A+ +KP
Sbjct: 835 YHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKP 894

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D + W+  + A+ ++  + + L++ ++M+  G         +LI A    + + +V  ++
Sbjct: 895 DDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVL 954

Query: 238 RTMHK 242
             + K
Sbjct: 955 DEVEK 959



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           PD +   +++N Y R+G+ E+ + VL  ME+     ++ TY+++I    R G +++   L
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALEL 289

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
            +S+  K L PD   + + +  + R+K       + +EM   G  PD      LI+    
Sbjct: 290 KRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVK 349

Query: 227 EDQI 230
           +  I
Sbjct: 350 QSDI 353



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 11/194 (5%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H +F+ M+  G  P + ++ +++    + G+V +   +   M   GL PD ++  ++++ 
Sbjct: 253 HVLFD-MEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDG 311

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME--GLFQ---SLPAK 173
           + R  +  + + +L  M       D   Y  LIN     GF+++ +  G FQ    + A+
Sbjct: 312 FCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALIN-----GFVKQSDIGGAFQVKEEMFAR 366

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           ++K +  T+ + +    +     +  ++F EM   G  PD  T   LI        +E+ 
Sbjct: 367 KIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKA 426

Query: 234 TTLVRTMHKDMKTA 247
             L+  + K+  TA
Sbjct: 427 YELLIEIKKENLTA 440



 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/183 (18%), Positives = 80/183 (43%), Gaps = 8/183 (4%)

Query: 32  FMLINFLLLQH-TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTA 83
           + L+  ++  H TPN   +   I +        +A  +F EM++  + P + ++  LL  
Sbjct: 811 YQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHG 870

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
           Y++ G  ++   + ++M   G+KPD    + M++ + + G + K  +++  M        
Sbjct: 871 YNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVC 930

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
            + Y ILI+   +   + ++  +   +  +  K  + T  + +  + R       L + E
Sbjct: 931 KNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLE 990

Query: 204 EMI 206
            M+
Sbjct: 991 SMV 993



 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 47/104 (45%)

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
           G+   D+ TY  LIN Y R G +E+ + +   +  K   P++VT++  +A   R      
Sbjct: 226 GAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDE 285

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            LE+   M + G  PD      LI     + +  +  +++  M+
Sbjct: 286 ALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMY 329



 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 60/137 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            I P + ++  L+ AY + G V + + V+  M + G  P+    + ++    R G  ++ 
Sbjct: 227 AIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEA 286

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            E+  +M       D   Y  LI+ + R     + + +   +    LKPD V +T+ +  
Sbjct: 287 LELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALING 346

Query: 189 YSRKKLYRRCLEIFEEM 205
           + ++       ++ EEM
Sbjct: 347 FVKQSDIGGAFQVKEEM 363


>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
 gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 100/187 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR GITP + ++  ++  Y K     +   +I +M+++G+ P+T   ++
Sbjct: 241 YSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYST 300

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++Y    +F +   V   M++ + A D++T NI+I++YG+   +++ + LF SL    
Sbjct: 301 LLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMD 360

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VV++ + L  Y   +L+   + +F  M       +  T   +I       + E+ T
Sbjct: 361 IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKAT 420

Query: 235 TLVRTMH 241
            LV+ M 
Sbjct: 421 NLVQEMQ 427



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 108/228 (47%), Gaps = 11/228 (4%)

Query: 41  QHTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           ++TP++F +       + +  F  AH +F+EM++  + P   ++  L+T++ K G     
Sbjct: 150 KYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSA 209

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
              + +M +  +  D  + ++++ L  RL  + K   + + +++     D+  YN +IN+
Sbjct: 210 LSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINV 269

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+     +   L + +    + P+ V++++ L+ Y     +   L +F EM +  C  D
Sbjct: 270 YGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALD 329

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIY---FNLYGE 257
             T  ++I      D +++   L  ++ K D++  +  Y     +YGE
Sbjct: 330 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGE 377



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP+L  +  + ++Y     F +A  + +EM   G+ P   S+  LL+ Y +     +   
Sbjct: 257 TPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALS 316

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V  +M +     D    N M+++YG+L   ++ + +  ++ K     ++ +YN ++ +YG
Sbjct: 317 VFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYG 376

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
                 +   LF+ +  K ++ +VVT+ + +  Y +   + +   + +EM   G  P+  
Sbjct: 377 EAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAI 436

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
           T   +IS      ++++  TL + + 
Sbjct: 437 TYSTIISIWGKAGKLDRAATLFQKLR 462



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 38/238 (15%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  +  I  +Y     F +A  +F  M+R  I   + ++  ++  Y KT    K   +
Sbjct: 363 PNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNL 422

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M   G++P+    +++++++G+ G+ ++   +   +       D   Y  +I  Y R
Sbjct: 423 VQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYER 482

Query: 157 GGFIEKMEGLFQSLP--------------AKRLKPDVVTWTSRLA--------------- 187
            G +   + L   L               AK  + +  TW  R A               
Sbjct: 483 VGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCM 542

Query: 188 --AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
              YSR + Y   +E+FE+M  AG +PD     ++++A   + + E+  T+ R M ++
Sbjct: 543 INLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEE 600



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 89/178 (50%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V++ +  F +A +VF EMK +     + +  +++  Y +   V + + +   + K  +
Sbjct: 302 LSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDI 361

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+    N++L +YG    F +   +   M++     ++ TYN +I IYG+    EK   
Sbjct: 362 EPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 421

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L Q + ++ ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 422 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 479



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 85/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  ++++ I P + S+  +L  Y +     +   +   M +  ++ +    N+M+
Sbjct: 348 EADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMI 407

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 408 KIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVE 467

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD    +  I+  +   + E+ T +
Sbjct: 468 IDQVLYQTMIVAYERVGLMGHAKRLLHEL----KLPDNIPRETAITILAKAGRTEEATWV 523

Query: 237 VR 238
            R
Sbjct: 524 FR 525



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 35/219 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+  GI P   ++  +++ + K G + +   +  ++  SG++ D  +  +M+ 
Sbjct: 419 ATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIV 478

Query: 118 LYGRLGQFEKMEEVL--------------------------------TAMEKGSYAADIS 145
            Y R+G     + +L                                 A E G    DIS
Sbjct: 479 AYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGE-VKDIS 537

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            +  +IN+Y R      +  +F+ +      PD       L AY +++ + +   ++ EM
Sbjct: 538 VFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREM 597

Query: 206 IDAGC-YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            + GC +PD    ++L S  SS+   E V +L + +  D
Sbjct: 598 QEEGCVFPDEVHFQML-SLYSSKKDFEMVESLFQRLESD 635



 Score = 37.4 bits (85), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLY 119
           VFE+M+  G  P      ++L AY K     K + V  +M + G + PD  V   ML+LY
Sbjct: 558 VFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDE-VHFQMLSLY 616

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
                FE +E +   +E          + ++  +Y R 
Sbjct: 617 SSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERA 654


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 96/199 (48%), Gaps = 3/199 (1%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           HTP   +        D     + ++ +G  P + ++  L+ A+++   + +   ++ +M 
Sbjct: 150 HTP---IITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMR 206

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G  P+    N +++   +L      ++V+  M +G +A ++ T+N L++ + + G ++
Sbjct: 207 ERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVD 266

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
               L   + AK ++P+VVT+++ +    + + +    E+ EEM   G  PD  T   LI
Sbjct: 267 DARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALI 326

Query: 222 SACSSEDQIEQVTTLVRTM 240
                 D+IE+   ++R M
Sbjct: 327 HGLCKADKIEEAEQMLRRM 345



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 96/192 (50%), Gaps = 1/192 (0%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S  F +A  V EEMK  G+TP   ++  L+    K   + + E ++ +M  SG  PD  V
Sbjct: 297 SQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 356

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL- 170
            +S+++ + + G+  + ++ L  M K   + D+ TYN +I+   + G I + + + + + 
Sbjct: 357 YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQ 416

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            +  + PDVVT+++ +    +  +     ++ + M  AGC PD  T   +I       ++
Sbjct: 417 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRL 476

Query: 231 EQVTTLVRTMHK 242
           E+   L++ M +
Sbjct: 477 EEAEYLLQGMKR 488



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 101/206 (49%), Gaps = 8/206 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP++ V+   I+         +A    +EM++   +P + ++  ++    K G +A+ + 
Sbjct: 351 TPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQV 410

Query: 96  VINQMHKSG-LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           ++ QM +SG + PD    ++++N   +     + +++L  M K     D+ TY  +I+  
Sbjct: 411 ILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGL 470

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G +E+ E L Q +      P+VVT+T+ ++   + +       + EEM +AGC P+ 
Sbjct: 471 CKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNL 530

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
            T   +++      +I++   LV+ M
Sbjct: 531 VTYNTMVNGLCVSGRIKEAQQLVQRM 556



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 94/189 (49%), Gaps = 3/189 (1%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            ++A  + E+M+  G + P + ++  ++    K+  + + + ++++M K+G  PD     
Sbjct: 405 IAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYT 464

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   + G+ E+ E +L  M++   A ++ TY  LI+   +   +++ E + + +   
Sbjct: 465 TIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNA 524

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIE 231
              P++VT+ + +         +   ++ + M D  A C PD  T + +++A  S D ++
Sbjct: 525 GCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQ 584

Query: 232 QVTTLVRTM 240
           +   L+  M
Sbjct: 585 EAEQLLEQM 593



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 98/217 (45%), Gaps = 4/217 (1%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +T  +  F  +    +A  + EEM+  G  P + ++ +L+ A  K   V   + V+ 
Sbjct: 179 VVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVK 238

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRG 157
           +M + G  P+    NS+++ + + G  +   ++L  M       ++ TY+ LI+ +    
Sbjct: 239 KMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ 298

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
            F+E  E + + +  + + PD  T+++ +    +        ++   M  +GC PD    
Sbjct: 299 KFLEAKE-VLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 357

Query: 218 KVLISA-CSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
             +I A C S   +E   TL + M K  K+   + +N
Sbjct: 358 SSIIHAFCKSGKLLEAQKTL-QEMRKQRKSPDVVTYN 393



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 85/189 (44%), Gaps = 1/189 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +   M   G+ P + ++  L+    K+    + + V+ +M   G+ PD F  ++
Sbjct: 265 VDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSA 324

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  + E+ E++L  M       D+  Y+ +I+ + + G + + +   Q +  +R
Sbjct: 325 LIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR 384

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIEQV 233
             PDVVT+ + +    +         I E+M ++G   PD  T   +I+     D + + 
Sbjct: 385 KSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEA 444

Query: 234 TTLVRTMHK 242
             L+  M K
Sbjct: 445 QKLLDRMCK 453



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 81/185 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V ++M   G  P + +   L+  + K GNV     ++  M   G++P+    +++++
Sbjct: 233 AQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALID 292

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +F + +EVL  M+      D  TY+ LI+   +   IE+ E + + +      P
Sbjct: 293 GLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTP 352

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV ++S + A+ +        +  +EM      PD  T   +I       +I +   ++
Sbjct: 353 DVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVIL 412

Query: 238 RTMHK 242
             M +
Sbjct: 413 EQMQE 417



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 32/169 (18%)

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG----- 158
           G     F  NS+L +  R  +  +  ++  +    S   D+ +YNI+I+ +   G     
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 159 --FIEKM-------------------------EGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
              +E+M                         +G    L +    P+VVT+T+ +AA++R
Sbjct: 132 LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFAR 191

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            K     +++ EEM + GC P+  T  VL+ A      +     +V+ M
Sbjct: 192 AKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 240


>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Glycine max]
          Length = 481

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 81/160 (50%)

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
           AY   G + K E   ++    G+KPD    N+M+  YG+ G +EKM+ V+  MEK  +  
Sbjct: 275 AYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIKSYGKAGMYEKMKTVMDFMEKRFFTP 334

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
            I TYN +I ++G+ G IEKM+  F  +    +KP+ +T+ S ++AYS+     +   I 
Sbjct: 335 TIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPNSITYCSLVSAYSKVGCIDKVDSIM 394

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             + ++    D      +ISA      ++++  L   M +
Sbjct: 395 RHVENSDVVLDTPFFNCIISAYGQAGNLKKMGELFLAMRE 434



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 5/204 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLY 119
           V  EM  LGI     ++  ++  Y K     + +  +N M ++G   PD F +NS +  Y
Sbjct: 217 VLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQMDDALNDMIENGNSHPDVFTLNSFVGAY 276

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G  GQ +KME+     +      DI+T+N +I  YG+ G  EKM+ +   +  +   P +
Sbjct: 277 GNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIKSYGKAGMYEKMKTVMDFMEKRFFTPTI 336

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+ + +  + +     +  + F +M   G  P+  T   L+SA S    I++V +++R 
Sbjct: 337 VTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPNSITYCSLVSAYSKVGCIDKVDSIMRH 396

Query: 240 M-HKDMKTALPIY---FNLYGEKG 259
           + + D+    P +    + YG+ G
Sbjct: 397 VENSDVVLDTPFFNCIISAYGQAG 420



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 87/179 (48%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           ++E + +GI P + +   ++ +Y K G   K + V++ M K    P     N+++ ++G+
Sbjct: 289 YDEFQLMGIKPDITTFNTMIKSYGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGK 348

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+ EKM++    M+      +  TY  L++ Y + G I+K++ + + +    +  D   
Sbjct: 349 AGEIEKMDQHFLKMKHLGVKPNSITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPF 408

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +   ++AY +    ++  E+F  M +  C PD  T   +I + +++   E V  L   M
Sbjct: 409 FNCIISAYGQAGNLKKMGELFLAMRERKCEPDNITFACMIQSYNTQGMTEAVQNLENMM 467



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 89/179 (49%), Gaps = 7/179 (3%)

Query: 37  FLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLG-------ITPTMKSHMLLLTAYSKTGN 89
           F L+   P++  F   I       ++E+MK +         TPT+ ++  ++  + K G 
Sbjct: 292 FQLMGIKPDITTFNTMIKSYGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGE 351

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           + K +    +M   G+KP++    S+++ Y ++G  +K++ ++  +E      D   +N 
Sbjct: 352 IEKMDQHFLKMKHLGVKPNSITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNC 411

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           +I+ YG+ G ++KM  LF ++  ++ +PD +T+   + +Y+ + +      +   MI A
Sbjct: 412 IISAYGQAGNLKKMGELFLAMRERKCEPDNITFACMIQSYNTQGMTEAVQNLENMMISA 470



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 6/209 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSM 115
           +A  +FE M   G+ PT+  +  L++AY ++G + +    +  M      +PD +  + +
Sbjct: 142 EASLLFEIMLSEGLKPTVDVYTALVSAYGQSGLLDQAFSTVEDMKSVVDCEPDVYTYSIL 201

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM-EGLFQSLPAKR 174
           +    +  +F+ +E VL  M       +  TYN +I+ YG+    E+M + L   +    
Sbjct: 202 IRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQMDDALNDMIENGN 261

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV T  S + AY       +  + ++E    G  PD  T   +I +       E++ 
Sbjct: 262 SHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIKSYGKAGMYEKMK 321

Query: 235 TLVRTMHKDMKTALPIYFN----LYGEKG 259
           T++  M K   T   + +N    ++G+ G
Sbjct: 322 TVMDFMEKRFFTPTIVTYNTVIEVFGKAG 350



 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 73/164 (44%), Gaps = 2/164 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P  +++  LL    K     +   +   M   GLKP   V  ++++ YG+ G  ++    
Sbjct: 122 PRCRTYAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAYGQSGLLDQAFST 181

Query: 132 LTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +  M+       D+ TY+ILI    +    + +E +   +    +K + VT+ S +  Y 
Sbjct: 182 VEDMKSVVDCEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYG 241

Query: 191 RKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIEQV 233
           +  ++ +  +   +MI+ G  +PD  T    + A  +  QI+++
Sbjct: 242 KASMFEQMDDALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKM 285



 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y     TY  L+ + G+    E+   LF+ + ++ LKP V  +T+ ++AY +  L  +  
Sbjct: 120 YQPRCRTYAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAYGQSGLLDQAF 179

Query: 200 EIFEEMID-AGCYPDGGTAKVLISACS 225
              E+M     C PD  T  +LI  C+
Sbjct: 180 STVEDMKSVVDCEPDVYTYSILIRCCA 206


>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 667

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 91/185 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +F+EM++ G++P   ++  L+T + K G        + QM +  +  D  + +++++
Sbjct: 163 AHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLID 222

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           L  +L  + K   + + ++  +   D+  YN +IN++G+     +   L Q +    ++P
Sbjct: 223 LARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQP 282

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++++ LA Y   + +   L +F EM +A C  D  T  ++I         ++   L 
Sbjct: 283 DTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLF 342

Query: 238 RTMHK 242
            +M K
Sbjct: 343 WSMRK 347



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM + GI P   ++  +++ + K G + +   +  ++  SG++ D  +  +M+ 
Sbjct: 408 ATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIV 467

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +  I I  R G IE+   +F Q+  A+ +K
Sbjct: 468 AYERTGLVAHAKRLLHELKR----PDNIPRDTAIAILARAGRIEEATWVFRQAFDAREVK 523

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+  +   +  +S+ K Y   +E+FE+M + G +PD     ++++A     + ++   L
Sbjct: 524 -DISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADAL 582

Query: 237 VRTMHKD 243
            R MH++
Sbjct: 583 YRQMHEE 589



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y +     +   +   M    ++ +    N+M+
Sbjct: 337 EADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMI 396

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N+YG+  + EK   ++  M K     +  TY+ +I+I+ + G +++   LFQ L +  ++
Sbjct: 397 NIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVR 456

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD       I+  +   +IE+ T +
Sbjct: 457 IDEVLYQTMIVAYERTGLVAHAKRLLHEL----KRPDNIPRDTAIAILARAGRIEEATWV 512

Query: 237 VR 238
            R
Sbjct: 513 FR 514



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 94/188 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +K   ITP + ++  ++  + K     +   ++ +M  + ++PDT   ++
Sbjct: 230 YSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYST 289

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   + + M +     D++T NI+I++YG+    ++ + LF S+    
Sbjct: 290 LLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMG 349

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+V+++ + L  Y    L+   + +F  M       +  T   +I+      + E+ T
Sbjct: 350 IQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKAT 409

Query: 235 TLVRTMHK 242
            L++ M+K
Sbjct: 410 NLIQEMNK 417



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 91/191 (47%), Gaps = 6/191 (3%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P++ ++ +LL    +        G+ ++M + GL PD +  ++++  +G+ G F+     
Sbjct: 142 PSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFW 201

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           L  ME+ + + D+  Y+ LI++  +     K   +F  L A  + PD++ + S +  + +
Sbjct: 202 LQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGK 261

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-----DMKT 246
            KL+R    + +EM D    PD  +   L++      +  +  +L   M++     D+ T
Sbjct: 262 AKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTT 321

Query: 247 ALPIYFNLYGE 257
              I  ++YG+
Sbjct: 322 C-NIMIDVYGQ 331



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 95/203 (46%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A  + +EM+   + P   S+  LL  Y       +   + +
Sbjct: 249 LIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFS 308

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M+++    D    N M+++YG+L   ++ + +  +M K     ++ +YN L+ +YG   
Sbjct: 309 EMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEAD 368

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ + +K ++ +VVT+ + +  Y +   + +   + +EM   G  P+  T  
Sbjct: 369 LFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYS 428

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 429 TIISIWEKAGKLDRAAILFQKLR 451



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 86/178 (48%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +++ +  F +A ++F EM        + +  +++  Y +     + + +   M K G+
Sbjct: 291 LAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGI 350

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+    N++L +YG    F +   +   M+      ++ TYN +INIYG+    EK   
Sbjct: 351 QPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATN 410

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 411 LIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVA 468



 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVIN 113
           +++   VFE+M+ +G  P      L+L A+ K     K + +  QMH+ G + PD  V  
Sbjct: 541 YANVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDE-VHF 599

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
            ML+LYG    F  +E +   ++          + ++ +IY R 
Sbjct: 600 QMLSLYGARKDFVMVESLFEKLDSNPNINKKELHLVVASIYERA 643



 Score = 40.4 bits (93), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKG 138
           ++  +SK    A    V  +M + G  PD+ VI  +LN +G+L +F+K + +   M E+G
Sbjct: 531 MINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEG 590

Query: 139 SYAADISTYNILINIYG-RGGFIEKMEGLFQSLPA 172
               D   + +L ++YG R  F+  +E LF+ L +
Sbjct: 591 CVFPDEVHFQML-SLYGARKDFV-MVESLFEKLDS 623


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 3/211 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV-INQMHKSGLKPDTFVINSML 116
           A  VFEEM+R G+ P   +   ++  YS+ GNV   EG+ + Q  + G+  D  V N++L
Sbjct: 202 ALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVM--EGLEVFQRLRQGVACDVIVYNAVL 259

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +    G   + E+ L  M +  +  +  TY  +I++Y + G   +    F  +     +
Sbjct: 260 KMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQ 319

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DV+ +TS L AY   K Y +  EI +EM    C PD     V+++   S D  E++  L
Sbjct: 320 IDVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPDERLCCVILNLLDSCDTDEELGIL 379

Query: 237 VRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
              +     T   I   ++ E  V R   G+
Sbjct: 380 RSCLRMCSSTMDTIVGQIFEENLVLRELRGE 410



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/198 (18%), Positives = 95/198 (47%), Gaps = 9/198 (4%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIY---------FSDAHAVFEEMKRLGITPTMKSHM 78
           +    +L  +L  +H+ +L ++ +++          +  +  + E+M    + P   ++ 
Sbjct: 23  WRQALLLFRWLRAEHSSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNITYS 82

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
            L++  ++           ++MH++G  PD    ++M+++YG++G++++   +   +++ 
Sbjct: 83  TLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQA 142

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            +  D  TY  ++ ++GR G+I     +F+ +    ++PD + +   +A   R       
Sbjct: 143 GWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHA 202

Query: 199 LEIFEEMIDAGCYPDGGT 216
           L++FEEM   G  P+  T
Sbjct: 203 LKVFEEMEREGVKPNAVT 220



 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 47/98 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A     EM   G  P   ++  +++ Y+K G   +     +QM ++G + D     S+
Sbjct: 269 SEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSL 328

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           L  YG   ++ K++E+L  M   + A D     +++N+
Sbjct: 329 LQAYGNAKEYNKVQEILDEMTSVNCAPDERLCCVILNL 366


>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 658

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 93/185 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +F+EM++ G++P   ++  L+T++ K G        + QM +  +  D  + +++++
Sbjct: 154 AHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLID 213

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           L  +L  + K   + + ++  + + D+  YN +IN++G+     +   L Q +    ++P
Sbjct: 214 LARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQP 273

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++++ LA Y   + +   L +F EM +A C  D  T  ++I         ++   L 
Sbjct: 274 DTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLF 333

Query: 238 RTMHK 242
            +M K
Sbjct: 334 WSMRK 338



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EMK+ GI P   ++  +++ + K G + +   +  ++  SG++ D  +  +M+ 
Sbjct: 399 ATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIV 458

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +  I I  R G IE+   +F Q+  A+ +K
Sbjct: 459 AYERAGLVAHAKRLLHELKR----PDNIPRDTAIGILARAGRIEEATWVFRQAFDAREVK 514

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+  +   +  +S+ K Y   +E+FE+M   G +PD     ++++A     + ++   L
Sbjct: 515 -DISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPDSDVIALVLNAFGKLREFDKADAL 573

Query: 237 VRTMHKD 243
            R MH++
Sbjct: 574 YRQMHEE 580



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y +     +   +   M    ++ +    N+M+
Sbjct: 328 EADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMI 387

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N+YG+  + EK   ++  M+K     +  TY+ +I+I+ + G +++   LFQ L +  ++
Sbjct: 388 NIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVR 447

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 448 IDEVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDTAIGILARAGRIEEATWV 503

Query: 237 VR 238
            R
Sbjct: 504 FR 505



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           +P++ ++ +LL    +        G+ ++M + GL PD +  ++++  +G+ G F+    
Sbjct: 132 SPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLF 191

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
            L  ME+ + + D+  Y+ LI++  +     K   +F  L A  + PD++ + S +  + 
Sbjct: 192 WLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFG 251

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-----DMK 245
           + KL+R    + +EM D    PD  +   L++      +  +  +L   M++     D+ 
Sbjct: 252 KAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLT 311

Query: 246 TALPIYFNLYGE 257
           T   I  ++YG+
Sbjct: 312 TC-NIMIDVYGQ 322



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 94/203 (46%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A  + +EM+   + P   S+  LL  Y       +   +  
Sbjct: 240 LIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFF 299

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M+++    D    N M+++YG+L   ++ + +  +M K     ++ +YN L+ +YG   
Sbjct: 300 EMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEAD 359

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ + +K ++ +VVT+ + +  Y +   + +   + +EM   G  P+  T  
Sbjct: 360 LFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYS 419

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 420 TIISIWEKAGKLDRAAILFQKLR 442



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 92/188 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +K   I+P + ++  ++  + K     +   ++ +M  + ++PDT   ++
Sbjct: 221 YSKAISIFSRLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYST 280

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   +   M +     D++T NI+I++YG+    ++ + LF S+    
Sbjct: 281 LLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMG 340

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VV++ + L  Y    L+   + +F  M       +  T   +I+      + E+ T
Sbjct: 341 IQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKAT 400

Query: 235 TLVRTMHK 242
            L++ M K
Sbjct: 401 NLIQEMKK 408



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 86/178 (48%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +++ +  F +A ++F EM        + +  +++  Y +     + + +   M K G+
Sbjct: 282 LAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGI 341

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+    N++L +YG    F +   +   M+      ++ TYN +INIYG+    EK   
Sbjct: 342 QPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATN 401

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 402 LIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVA 459



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLY 119
           VFE+M+ +G  P      L+L A+ K     K + +  QMH+ G + PD  V   ML+LY
Sbjct: 538 VFEKMRVVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDE-VHFQMLSLY 596

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
           G    F  +E +   ++          + ++ +IY R 
Sbjct: 597 GARKDFVMVESLFEKLDSNPNINKKELHLVVASIYERA 634



 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 7/95 (7%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKG 138
           L +   K GNV +   V  +M   G  PD+ VI  +LN +G+L +F+K + +   M E+G
Sbjct: 525 LFSKNKKYGNVVE---VFEKMRVVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEG 581

Query: 139 SYAADISTYNILINIYG-RGGFIEKMEGLFQSLPA 172
               D   + +L ++YG R  F+  +E LF+ L +
Sbjct: 582 CVFPDEVHFQML-SLYGARKDFV-MVESLFEKLDS 614


>gi|225425456|ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
           [Vitis vinifera]
          Length = 792

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 88/175 (50%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +F+     S A  +FE    +G+ P + ++  ++TA+ K G   +  GV ++M +   
Sbjct: 592 LSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMGEKVC 651

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            PD    N ++   G++G+ +    VL  + K     DI  YN LIN  G+ G I++   
Sbjct: 652 PPDIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYLDIVMYNTLINALGKAGRIDEATK 711

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           LF+ + +  + PDVVT+ + +  +++    +   +  + M+DAGC P+  T   L
Sbjct: 712 LFEQMRSSGINPDVVTFNTLIEIHAKAGQLKAAYKFLKLMLDAGCSPNHVTDTTL 766



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 70/152 (46%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           M ++ ++  +   +  F+   YF++A  VF EM      P + ++ +++    K G    
Sbjct: 614 MGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMGEKVCPPDIATYNVIIQGLGKMGRADL 673

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              V++ + K G   D  + N+++N  G+ G+ ++  ++   M       D+ T+N LI 
Sbjct: 674 ASAVLDMLMKQGGYLDIVMYNTLINALGKAGRIDEATKLFEQMRSSGINPDVVTFNTLIE 733

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           I+ + G ++      + +      P+ VT T+
Sbjct: 734 IHAKAGQLKAAYKFLKLMLDAGCSPNHVTDTT 765



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V+EE+K  G  P   ++ +L+   SK+  +     + N+M  +G  PDT V N++L
Sbjct: 290 DALIVWEELKGSGHEPDAFTYRILIQGCSKSYRMDDAMRIFNEMQYNGFCPDTIVYNTLL 349

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  +  +  +V   M +    A   T+NI+I    R G       LF  L  K   
Sbjct: 350 DGLFKARKVMEACQVFEKMVEDGVRASCWTHNIVICGLFRNGRAAAGYTLFCDLKKKGKF 409

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            D +T++  +    R+      L++ EEM   G   D
Sbjct: 410 VDGITYSIVVLQLCREGQLEEALQLVEEMEARGFVVD 446



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VFE+M   G+  +  +H +++    + G  A    +   + K G   D    + ++
Sbjct: 360 EACQVFEKMVEDGVRASCWTHNIVICGLFRNGRAAAGYTLFCDLKKKGKFVDGITYSIVV 419

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R GQ E+  +++  ME   +  D+ T   L+  + + G  +  E L + +    L 
Sbjct: 420 LQLCREGQLEEALQLVEEMEARGFVVDLVTITSLLIGFHKQGRWDWTERLMKHIRDGNLV 479

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
           P+V+ W + + AY +    RR  + +  M     +P  G    ++S  SS D
Sbjct: 480 PNVLNWKANMEAYMKAPQSRR--KDYTPM-----FPSEGNLSEIMSLISSAD 524



 Score = 43.5 bits (101), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK-----PD 178
           +F  + E L A  K  +  D   YNI I+ +G  G +     LF+ +  K L      PD
Sbjct: 214 EFRNVFEKLRA--KKDFDLDTQGYNICIHAFGCWGDLGTALNLFKEMKDKSLNSSSFGPD 271

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           + T+ S +         +  L ++EE+  +G  PD  T ++LI  CS   +++    +  
Sbjct: 272 LCTYNSLIRVLCLVGKVKDALIVWEELKGSGHEPDAFTYRILIQGCSKSYRMDDAMRIFN 331

Query: 239 TMH 241
            M 
Sbjct: 332 EMQ 334



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 7/179 (3%)

Query: 42  HTPNLFVFIF-------SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P+ F +         S    DA  +F EM+  G  P    +  LL    K   V +  
Sbjct: 303 HEPDAFTYRILIQGCSKSYRMDDAMRIFNEMQYNGFCPDTIVYNTLLDGLFKARKVMEAC 362

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            V  +M + G++   +  N ++    R G+      +   ++K     D  TY+I++   
Sbjct: 363 QVFEKMVEDGVRASCWTHNIVICGLFRNGRAAAGYTLFCDLKKKGKFVDGITYSIVVLQL 422

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            R G +E+   L + + A+    D+VT TS L  + ++  +     + + + D    P+
Sbjct: 423 CREGQLEEALQLVEEMEARGFVVDLVTITSLLIGFHKQGRWDWTERLMKHIRDGNLVPN 481



 Score = 37.0 bits (84), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 39/87 (44%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           KG  + DI   N  ++I+   G +     LF+      + P + T+ S + A+ +K  + 
Sbjct: 578 KGIDSFDIDMVNTYLSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFN 637

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISA 223
               +F EM +  C PD  T  V+I  
Sbjct: 638 EAWGVFHEMGEKVCPPDIATYNVIIQG 664


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL  F   +Y         +A  V  +MK  G+ P +     LL+ Y+  G +A    +
Sbjct: 234 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 293

Query: 97  INQMHKSGLKPD----TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           +N M K G +P+    T +I ++     R+ +  +   V   ME+    ADI TY  LI+
Sbjct: 294 MNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMR---VFVEMERYGCEADIVTYTALIS 350

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            + + G I+K   +   +  K + P  VT+   + A+ +K+ +  CLE+ E+M   GC+P
Sbjct: 351 GFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHP 410

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           D     V+I       ++++   L   M 
Sbjct: 411 DLLIYNVVIRLACKLGEVKEAVRLWNEME 439



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 87/179 (48%), Gaps = 2/179 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VF EM+R G    + ++  L++ + K G + K   V++ M K G+ P       
Sbjct: 323 MDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQ 382

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + +  QFE+  E++  M++     D+  YN++I +  + G +++   L+  + A  
Sbjct: 383 IMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANG 442

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY--PDGGTAKVLISACSSEDQIE 231
           L P V T+   +  ++ +         F+EM+  G +  P  GT K L++    +D++E
Sbjct: 443 LSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLE 501



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 91/187 (48%), Gaps = 2/187 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VFE+M R    P ++    LL  + + G + + + V+ QM ++GL+PD  V  ++L
Sbjct: 220 EASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLL 278

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRL 175
           + Y   G+     +++  M K  +  +++ Y +LI    R    +++   +F  +     
Sbjct: 279 SGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGC 338

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D+VT+T+ ++ + +  +  +   + ++M   G  P   T   ++ A   ++Q E+   
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLE 398

Query: 236 LVRTMHK 242
           L+  M +
Sbjct: 399 LIEKMKR 405



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 90/192 (46%), Gaps = 7/192 (3%)

Query: 55  FSDAHAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           F     + EEM++     I P +   ++L+  ++    V K   V+++M K GL+PD +V
Sbjct: 147 FGAVWGLIEEMRKTNPELIEPEL--FVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYV 204

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
              +L+   + G  ++  +V   M +  +  ++  +  L+  + R G + + + +   + 
Sbjct: 205 FGCLLDALCKNGSVKEASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMK 263

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQI 230
              L+PD+V +T+ L+ Y+         ++  +M   G  P+     VLI A C +E ++
Sbjct: 264 EAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRM 323

Query: 231 EQVTTLVRTMHK 242
           ++   +   M +
Sbjct: 324 DEAMRVFVEMER 335


>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 83/165 (50%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SD H ++E+MK+ G +P + S+ +L++++ + G V +   +  ++  S  KPD    NS+
Sbjct: 454 SDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSL 513

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  G+ G  ++       M +   + D+ TY+ LI  +G+   +E    LF  + A+  
Sbjct: 514 INCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGC 573

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            P++VT+   L    R       ++++ ++   G  PD  T  VL
Sbjct: 574 SPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 618



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 89/185 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH +F  M          ++M +L +    G   +   +++++H+  +  DT + N++
Sbjct: 384 SEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTV 443

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+  G+L +   + ++   M++   + DI +YNILI+ +GR G +E+   +F+ L     
Sbjct: 444 LSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSC 503

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPD++++ S +    +          F+EM + G  PD  T   LI      D++E    
Sbjct: 504 KPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACR 563

Query: 236 LVRTM 240
           L   M
Sbjct: 564 LFDEM 568



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +L+A  K    +    +  +M + G  PD F  N +++ +GR G+ E+  ++   +E  S
Sbjct: 443 VLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSS 502

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              DI ++N LIN  G+ G I++    F+ +  + L PDVVT+++ +  + +        
Sbjct: 503 CKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMAC 562

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +F+EM+  GC P+  T  +L+       +  +   L
Sbjct: 563 RLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDL 599



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+ ++M+R G+  ++ +  +L+  +    +V +C  ++    K  L+ + +    +L  +
Sbjct: 179 AILDDMERCGVRGSISTINILIGIFGGGADVERCFDLVK---KWDLQMNCYTYKCLLQAH 235

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            R     K  EV   + +  Y  DI  YN+L++   +   ++++  +F+ +  K  +PD 
Sbjct: 236 LRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDE 295

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+T  +    +       L +F+EM + G  P+      +I A ++   +++   L   
Sbjct: 296 YTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSK 355

Query: 240 M 240
           M
Sbjct: 356 M 356



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           T N+ + IF    +D    F+ +K+  +     ++  LL A+ ++ N  K   V  ++ +
Sbjct: 195 TINILIGIFG-GGADVERCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRR 253

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G K D F  N +L+   +  + +++  V   M++     D  TY I+I + G+ G  ++
Sbjct: 254 RGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADE 313

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
              LFQ +  K   P+++ + + + A +  ++  + + +F +M+
Sbjct: 314 SLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMV 357



 Score = 44.3 bits (103), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           + + +  +L  ME+      IST NILI I+G G  +E+    F  +    L+ +  T+ 
Sbjct: 173 RLDLIRAILDDMERCGVRGSISTINILIGIFGGGADVER---CFDLVKKWDLQMNCYTYK 229

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             L A+ R     +  E++ E+   G   D     +L+ A + +++++QV  + + M +
Sbjct: 230 CLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKR 288



 Score = 38.1 bits (87), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 37/230 (16%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF++MKR    P   ++ +++    K G   +   +  +M + G  P+    N+M+    
Sbjct: 282 VFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALA 341

Query: 121 R-------LGQFEKM--EEVLTAMEKGSYAADIST----------YNILINIYG------ 155
                   +  F KM  E     M K  YA  + T          + +  N++       
Sbjct: 342 NNRMVDKTIFLFSKMVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGD 401

Query: 156 RGGFIEKMEGL------------FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           R  ++  +E L               +  KR+  D V + + L+A  + K      +++E
Sbjct: 402 RDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYE 461

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           +M   G  PD  +  +LIS+     ++E+   +   +         I FN
Sbjct: 462 KMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFN 511


>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 478

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 1/165 (0%)

Query: 58  AHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A   FE+MK +    P + ++ +LL A+++  NV +   +   + +S + PD +  N ++
Sbjct: 190 ALGYFEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVM 249

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YG+ G   +ME VL+ M+      DI T+N+LI+ YG+    +KME +F+SL   + +
Sbjct: 250 DAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKER 309

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           P + T+ S +  Y + +       + ++M      P+  T + LI
Sbjct: 310 PTLPTFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLI 354



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 83/154 (53%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +  +A+F+++ +  ++P + ++  ++ AY K G + + E V+++M  +  KPD    N +
Sbjct: 224 NQVNALFKDLDQSIVSPDIYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLL 283

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ YG+   F+KME+V  ++        + T+N +I  YG+    E  E + Q +   + 
Sbjct: 284 IDSYGKKQDFDKMEQVFKSLLHSKERPTLPTFNSMITNYGKARQKENAESVLQKMTKMKY 343

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P+ +T+ S +  Y       +  EIF++MI++G
Sbjct: 344 TPNFITYESLIMMYGFCDSVSKAREIFDDMIESG 377



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 79/187 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  +V   MK     P + +  LL+ +Y K  +  K E V   +  S  +P     NSM+
Sbjct: 260 EMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPTLPTFNSMI 319

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG+  Q E  E VL  M K  Y  +  TY  LI +YG    + K   +F  +     +
Sbjct: 320 TNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCDSVSKAREIFDDMIESGKE 379

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             V T  + L  Y    L      +F+   + G  PD  T K+L  A +  +  + V  L
Sbjct: 380 VKVSTLNAMLDVYCLNGLPMEADLLFDNARNVGLLPDSTTYKLLYKAYTKANMKKLVQKL 439

Query: 237 VRTMHKD 243
           ++ M +D
Sbjct: 440 LKHMDRD 446



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 90/190 (47%), Gaps = 5/190 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAY----SKTGNVAKCEGVINQMHK-SGLKPDTFVI 112
           A  +F EM+  G  P    +  L+TA+     K   + K  G   +M      +P+    
Sbjct: 151 AMWLFSEMRNSGCRPDSSVYNALITAHLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTY 210

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +L  + +     ++  +   +++   + DI TYN +++ YG+ G I +ME +   + +
Sbjct: 211 NILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYGKNGMIREMESVLSRMKS 270

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            + KPD++T+   + +Y +K+ + +  ++F+ ++ +   P   T   +I+      Q E 
Sbjct: 271 NQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPTLPTFNSMITNYGKARQKEN 330

Query: 233 VTTLVRTMHK 242
             ++++ M K
Sbjct: 331 AESVLQKMTK 340



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 66/159 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     VF+ +      PT+ +   ++T Y K       E V+ +M K    P+     S
Sbjct: 293 FDKMEQVFKSLLHSKERPTLPTFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYES 352

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +YG      K  E+   M +      +ST N ++++Y   G   + + LF +     
Sbjct: 353 LIMMYGFCDSVSKAREIFDDMIESGKEVKVSTLNAMLDVYCLNGLPMEADLLFDNARNVG 412

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L PD  T+     AY++  + +   ++ + M   G  P+
Sbjct: 413 LLPDSTTYKLLYKAYTKANMKKLVQKLLKHMDRDGIIPN 451



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 94/233 (40%), Gaps = 22/233 (9%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
            T +L  ++   + SD   +   + +       +   LL     +     +C  V   M 
Sbjct: 64  ETEDLVRYVLRSFSSDKVPLVRTLDKYVRVVRTEHCFLLFEELGRRDKWLQCLEVFRWMQ 123

Query: 102 KSGLK-PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG--- 157
           K      D+ V + ++++ G+ GQ      + + M       D S YN LI  +      
Sbjct: 124 KQRWYIADSGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALITAHLHSKDK 183

Query: 158 --------GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
                   G+ EKM+G+      +R +P+VVT+   L A+++ +   +   +F+++  + 
Sbjct: 184 AKALIKALGYFEKMKGM------QRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSI 237

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEK 258
             PD  T   ++ A      I ++ +++  M  +      I FNL    YG+K
Sbjct: 238 VSPDIYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKK 290


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 92/189 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++A  +F EM    + P   +  +L+    K G V++   V   M K G +P+ +  N
Sbjct: 282 HLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYN 341

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ Y    Q ++ ++VL  M     A  + +YNILIN Y +   +++ + L   +  K
Sbjct: 342 ALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEK 401

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD VT+++ +    +    +  L +F+EM  +G  PD  T   L+        +++ 
Sbjct: 402 ELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEA 461

Query: 234 TTLVRTMHK 242
             L+++M +
Sbjct: 462 LKLLKSMQE 470



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A ++  EM    +TP   ++  L+    + G   +   +  +M  SGL PD    ++
Sbjct: 388 LDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYST 447

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   + G  ++  ++L +M++     DI  YNILI      G +E  + LF  L A  
Sbjct: 448 LLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADG 507

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P + T+T  +    ++ L     E+F +M D G  P+  +  V+I  
Sbjct: 508 IQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQG 556



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 85/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S   ++  +M   G+T  + S  +L+    +  +V     V+ +M K G++PD    N+
Sbjct: 108 YSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNT 167

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N     G+ ++   +   M +  +  D+ +Y+ +IN   + G       L + +  K 
Sbjct: 168 LINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG 227

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP++V +T+ + +  +  L    +++  EM+D G  PD  T   ++    S   + + T
Sbjct: 228 CKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEAT 287

Query: 235 TLVRTM 240
            L   M
Sbjct: 288 ILFNEM 293



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 81/189 (42%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           SI   DA A F  M R+   P++      L + +K    +    + NQM   G+  + + 
Sbjct: 70  SISIDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYS 129

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +N ++N   RL        VL  M K     D  T+N LIN     G I++  GLF  + 
Sbjct: 130 LNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMV 189

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            +  +PDV+++++ +    +       L++  +M + GC P+      +I +   +  + 
Sbjct: 190 RRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVN 249

Query: 232 QVTTLVRTM 240
               L+  M
Sbjct: 250 DAMDLLSEM 258



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 78/185 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +V  +M +LGI P   +   L+      G + +  G+ N+M + G +PD    ++++N
Sbjct: 146 AISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVIN 205

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G      ++L  ME+     ++  Y  +I+   +   +     L   +  + + P
Sbjct: 206 GLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPP 265

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+++ L  +           +F EM+     P+  T  +L+     E  + +   + 
Sbjct: 266 DVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVF 325

Query: 238 RTMHK 242
             M K
Sbjct: 326 EAMTK 330



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 82/188 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  VFE M + G  P   ++  L+  Y     + + + V++ M   G  P     N +
Sbjct: 319 SEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNIL 378

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y +  + ++ + +L  M +     D  TY+ L+    + G  ++   LF+ + +  L
Sbjct: 379 INGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGL 438

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD++T+++ L    +       L++ + M ++   PD     +LI       ++E    
Sbjct: 439 LPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKE 498

Query: 236 LVRTMHKD 243
           L   +  D
Sbjct: 499 LFSKLFAD 506



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/187 (17%), Positives = 85/187 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +  +M+  G  P + ++  ++ +  K   V     ++++M   G+ PD    +++
Sbjct: 214 SMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTI 273

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ +  LG   +   +   M   +   +  T+ IL++   + G + +   +F+++  K  
Sbjct: 274 LHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGA 333

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+  T+ + +  Y          ++ + M+D GC P   +  +LI+      ++++  +
Sbjct: 334 EPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKS 393

Query: 236 LVRTMHK 242
           L+  M +
Sbjct: 394 LLVEMSE 400



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 79/174 (45%), Gaps = 1/174 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM   G+ P + ++  LL    K G++ +   ++  M +S ++PD  + N ++
Sbjct: 425 EALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILI 484

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 G+ E  +E+ + +        I TY I+I    + G  ++   LF+ +      
Sbjct: 485 EGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFL 544

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           P+  ++   +  + + +     + + +EM+      D  T ++L+    S D+I
Sbjct: 545 PNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDL-ESRDEI 597


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 88/180 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G +P       L+   SK G V + + V N+M  SG+ P    ++ ++ +Y 
Sbjct: 270 LVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYT 329

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R+G +++  EV   ++   +  D++ YN L+     GG +E+ E + + +      PD +
Sbjct: 330 RVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHL 389

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + +  Y+ K +      +F++++     PD     V+I AC    +IEQ + +   M
Sbjct: 390 TYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEM 449



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 1/166 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM+  G++PT  +  +L+  Y++ G   +   V   +   G K D  V NS++ 
Sbjct: 302 AKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMK 361

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ E+ E++L  M++     D  TY   +N Y   G ++    +F  + A   KP
Sbjct: 362 ACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKP 421

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLIS 222
           D   +T  + A        +  +IF+EM+++G C PD   + +L+S
Sbjct: 422 DTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLLS 467



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 78/164 (47%)

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           E ++ +M   G++PD +  ++++N   R  Q E+  +    M+      D  TYN +I++
Sbjct: 163 EKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDM 222

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YGR G + +   L++ L +   K D VT+ +    Y+R   Y+  +++ +EM D+G  P+
Sbjct: 223 YGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPN 282

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGE 257
                 L+   S   ++ Q   +   M     +  P+  ++  E
Sbjct: 283 AVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVE 326



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 12/212 (5%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   FE MK  GI P   ++  ++  Y + G V +   +  ++     K DT    ++ 
Sbjct: 196 EALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIA 255

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N+Y R G ++ + +++  M     + +    N L+    + G + + + +F  +    + 
Sbjct: 256 NVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVS 315

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P  VT +  +  Y+R   Y +  E++E +   G   D      L+ AC    ++EQ   +
Sbjct: 316 PTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDI 375

Query: 237 VRTM--------HKDMKTALPIYFNLYGEKGV 260
           ++ M        H   +TA+    N Y  KG+
Sbjct: 376 LKEMKRAGCNPDHLTYRTAM----NTYATKGM 403



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 72/164 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           +  + EEM   GI P   +   L+    +     +      +M   G+ PD    NS+++
Sbjct: 162 SEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVID 221

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR+G+  +  E+   ++  ++  D  TY  + N+Y R G  + +  L Q +      P
Sbjct: 222 MYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSP 281

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + V   + +   S+     +  ++F EM  +G  P   T  +L+
Sbjct: 282 NAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILV 325



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 76/158 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  ++E++K +       ++  +   Y++ G+      ++ +M  SG  P+  ++N++
Sbjct: 230 NEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTL 289

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G+  + ++V   M     +    T +IL+ +Y R G  ++   ++++L  +  
Sbjct: 290 MGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGW 349

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           K DV  + S + A        +  +I +EM  AGC PD
Sbjct: 350 KCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPD 387



 Score = 41.2 bits (95), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 9/153 (5%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKME 129
           TP       +L    KTGNV   E  +    KS   K    V+N++      L  FE ++
Sbjct: 77  TPQFARVDEVLKILQKTGNV---EAALESWDKSLSAKNIVTVLNNINRWEKALAFFEWLK 133

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
                 E   Y     TYN+++ I   G  +E  E L + +  + ++PD  T+++ +   
Sbjct: 134 ARPELYEINRY-----TYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCA 188

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            R +     L+ FE M   G  PD  T   +I 
Sbjct: 189 KRCRQPEEALKWFERMKSEGIVPDEVTYNSVID 221


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 88/180 (48%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G +P       L+   SK G V + + V N+M  SG+ P    ++ ++ +Y 
Sbjct: 270 LVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYT 329

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R+G +++  EV   ++   +  D++ YN L+     GG +E+ E + + +      PD +
Sbjct: 330 RVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHL 389

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + +  Y+ K +      +F++++     PD     V+I AC    +IEQ + +   M
Sbjct: 390 TYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEM 449



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 1/166 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM+  G++PT  +  +L+  Y++ G   +   V   +   G K D  V NS++ 
Sbjct: 302 AKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMK 361

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ E+ E++L  M++     D  TY   +N Y   G ++    +F  + A   KP
Sbjct: 362 ACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKP 421

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLIS 222
           D   +T  + A        +  +IF+EM+++G C PD   + +L+S
Sbjct: 422 DTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLLS 467



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 78/164 (47%)

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           E ++ +M   G++PD +  ++++N   R  Q E+  +    M+      D  TYN +I++
Sbjct: 163 EKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDM 222

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YGR G + +   L++ L +   K D VT+ +    Y+R   Y+  +++ +EM D+G  P+
Sbjct: 223 YGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPN 282

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGE 257
                 L+   S   ++ Q   +   M     +  P+  ++  E
Sbjct: 283 AVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVE 326



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 12/212 (5%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   FE MK  GI P   ++  ++  Y + G V +   +  ++     K DT    ++ 
Sbjct: 196 EALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIA 255

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N+Y R G ++ + +++  M     + +    N L+    + G + + + +F  +    + 
Sbjct: 256 NVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVS 315

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P  VT +  +  Y+R   Y +  E++E +   G   D      L+ AC    ++EQ   +
Sbjct: 316 PTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDI 375

Query: 237 VRTM--------HKDMKTALPIYFNLYGEKGV 260
           ++ M        H   +TA+    N Y  KG+
Sbjct: 376 LKEMKRAGCNPDHLTYRTAM----NTYATKGM 403



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 72/164 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           +  + EEM   GI P   +   L+    +     +      +M   G+ PD    NS+++
Sbjct: 162 SEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVID 221

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR+G+  +  E+   ++  ++  D  TY  + N+Y R G  + +  L Q +      P
Sbjct: 222 MYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSP 281

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + V   + +   S+     +  ++F EM  +G  P   T  +L+
Sbjct: 282 NAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILV 325



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 76/158 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  ++E++K +       ++  +   Y++ G+      ++ +M  SG  P+  ++N++
Sbjct: 230 NEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTL 289

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G+  + ++V   M     +    T +IL+ +Y R G  ++   ++++L  +  
Sbjct: 290 MGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGW 349

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           K DV  + S + A        +  +I +EM  AGC PD
Sbjct: 350 KCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPD 387



 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 9/153 (5%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKME 129
           TP       +L    KTGNV   E  +    KS   K    V+N++      L  FE ++
Sbjct: 77  TPQFARVDEVLKIVQKTGNV---EAALESWDKSLSAKNIVTVLNNINRWEKALAFFEWLK 133

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
                 E   Y     TYN+++ I   G  +E  E L + +  + ++PD  T+++ +   
Sbjct: 134 ARPELYEINRY-----TYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCA 188

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            R +     L+ FE M   G  PD  T   +I 
Sbjct: 189 KRCRQPEEALKWFERMKSEGIVPDEVTYNSVID 221


>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa]
 gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 36/224 (16%)

Query: 38  LLLQHTPNLFVFIFSIYFSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           +LL    +L +   ++ F++  A   EM  +    P + +    + A+  +G +   E  
Sbjct: 232 VLLSDMESLGIRPNTVTFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENC 291

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +   +G++P+    N +L+ YG+ G ++KM  V+  M++  Y+  I TYN++I+ +GR
Sbjct: 292 YEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGR 351

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR---------------------KKLY 195
            G +++ME LF+ + ++R+KP  VT  S + AY                         ++
Sbjct: 352 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVF 411

Query: 196 RRCL--------------EIFEEMIDAGCYPDGGTAKVLISACS 225
             CL              E+ E M + GC PD  T + +I A S
Sbjct: 412 FNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYS 455



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 70/138 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +    AV E M+R   + T+ ++ +++ A+ + G++ + E +   M    +KP    + S
Sbjct: 320 YQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 379

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y   G+ EK+  VL  +E      D   +N L++ YGR     +M+ + + +  K 
Sbjct: 380 LVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELMEEKG 439

Query: 175 LKPDVVTWTSRLAAYSRK 192
            KPD VT+ + + AYS K
Sbjct: 440 CKPDKVTYRTMIKAYSIK 457



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 14/200 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           F     +  +M+ LGI P              T   A+ E  + +M  +   +PD + +N
Sbjct: 227 FDKVQVLLSDMESLGIRPN-------------TVTFAEMEATLMEMLSQQDCEPDVWTMN 273

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S +  +G  GQ E ME      +      +I T+NIL++ YG+ G  +KM  + + +   
Sbjct: 274 STIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRY 333

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
                +VT+   + A+ R    ++   +F  M      P   T   L+ A     + E++
Sbjct: 334 HYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKI 393

Query: 234 TTLVRTMHKDMKTALPIYFN 253
            +++R +     T   ++FN
Sbjct: 394 GSVLRFIENSDVTLDTVFFN 413



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  M+   I P+  +   L+ AY + G   K   V+  +  S +  DT   N +++ YG
Sbjct: 361 LFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYG 420

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI---EKMEGLFQSLPAKR--- 174
           RL  F +M+EVL  ME+     D  TY  +I  Y   G     +K+  L  S+   R   
Sbjct: 421 RLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRNLLGSVEVTRSPK 480

Query: 175 LKPD 178
            KPD
Sbjct: 481 KKPD 484



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 14/184 (7%)

Query: 50  IFSIYFSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           I ++ ++ A  VFE ++ +L   P    ++ L+    K     K   +   M   G    
Sbjct: 115 ITALRWASALEVFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVT 174

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLF 167
                ++L+ YGR G F+K   ++  M+       D+ TY+ILI    +    +K++ L 
Sbjct: 175 HESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLL 234

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             + +  ++P+ VT+    A             + E +    C PD  T    I A    
Sbjct: 235 SDMESLGIRPNTVTFAEMEAT------------LMEMLSQQDCEPDVWTMNSTIRAFGGS 282

Query: 228 DQIE 231
            Q+E
Sbjct: 283 GQME 286


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AVF EM + G+ P + +   L+ A  K GN+ +   ++ QM + GL+ +     ++++ +
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G  +     +  M K      +  YN LIN Y + G ++    L + + AKR+KPDV
Sbjct: 339 CKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 398

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+++ ++ Y +        ++ ++M+  G  PD  T   LI     E ++     L   
Sbjct: 399 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFEN 458

Query: 240 M 240
           M
Sbjct: 459 M 459



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 6/197 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A A+  +M+  G+     +   L+  + K G +      + +M K G++P     N+
Sbjct: 309 LEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 368

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y +LG+ +   E++  ME      D+ TY+ +I+ Y + G ++    L Q +  K 
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD +T++S +     +K      E+FE M+  G  PD  T   LI     E  +E+  
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488

Query: 235 TLVRTMHKDM--KTALP 249
           +L    H +M  K  LP
Sbjct: 489 SL----HDEMIRKGVLP 501



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 1/191 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA    EEM++ GI P++  +  L+  Y K G +     +I +M    +KPD    +
Sbjct: 343 FLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYS 402

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ Y ++G  +   ++   M K     D  TY+ LI        +     LF+++   
Sbjct: 403 TIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL 462

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++PD  T+T+ +  + ++    + L + +EMI  G  PD  T  VLI+  S   + ++ 
Sbjct: 463 GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEA 522

Query: 234 TTLV-RTMHKD 243
             L+ +  H+D
Sbjct: 523 HRLLFKLYHED 533



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 10/214 (4%)

Query: 39  LLQH--TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           +L+H   PN++ +   +          +A  V  +M+  G  P   ++  L+ A+ + G 
Sbjct: 143 MLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202

Query: 90  VAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
           +   E V++ M + G  KP+    NSM+N   + G+ E   +V   M +   A D+ +YN
Sbjct: 203 LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 262

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            L++ Y + G + +   +F  +  + L PDVVT+TS + A  +     + + +  +M + 
Sbjct: 263 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 322

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           G   +  T   LI     +  ++     V  M K
Sbjct: 323 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 74/169 (43%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + +   ++    K G +     V ++M + GL PD    N++L+ Y ++G   +   V
Sbjct: 221 PNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 280

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            + M +     D+ T+  LI+   + G +E+   L   +  + L+ + VT+T+ +  + +
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 340

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           K      L   EEM   G  P       LI+      +++    L+R M
Sbjct: 341 KGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 389



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 37/210 (17%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P++ ++  +L A S   ++      ++ M + G+ P+ +  N ++      G+ E+ 
Sbjct: 113 GYAPSVPAYNAVLLALSD-ASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIE--------------------------- 161
             V+  M     A +  TYN L+  + R G ++                           
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 162 ------KMEG---LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
                 +MEG   +F  +  + L PDVV++ + L+ Y +       L +F EM   G  P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           D  T   LI A      +EQ   LV  M +
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRE 321



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/211 (18%), Positives = 90/211 (42%), Gaps = 19/211 (9%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  +FE M +LG+ P   ++  L+  + K GNV K   + ++M + G+ PD    + 
Sbjct: 449 LNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSV 508

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG---------------GF 159
           ++N   +  + ++   +L  +       D   Y+ L+    +                G 
Sbjct: 509 LINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGL 568

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++ + ++QS+  +  K D   ++  +  + R    R+ L   ++M+ +G  P+  +   
Sbjct: 569 MKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTIS 628

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
           L+     E  + +    +    +D+ T  P+
Sbjct: 629 LVRGLFEEGMVVEADNAI----QDLLTCCPL 655



 Score = 40.8 bits (94), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 71/174 (40%), Gaps = 15/174 (8%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           ++M + G+ P   ++  L+    +   +     +   M + G++PD F   ++++ + + 
Sbjct: 422 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 481

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  EK   +   M +     D+ TY++LIN   +    ++   L   L  +   PD + +
Sbjct: 482 GNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 541

Query: 183 ---------------TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
                           + L  +  K L +   ++++ M+D     DG    +LI
Sbjct: 542 DALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILI 595


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 86/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F+DA  +F EM   G+ P   +   L+  Y K GN+ K   +   M ++ LKPD    N+
Sbjct: 483 FADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNT 542

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+  + +E+   M +     D  +Y  ++N +   G + +   L   +  K 
Sbjct: 543 LIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKG 602

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P++VT  + +  Y R     +  E   +MI  G  PD  +   LI     E  +E+  
Sbjct: 603 IRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAF 662

Query: 235 TLVRTMHK 242
            L+  M K
Sbjct: 663 ILINEMEK 670



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 2/208 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +    F+ ++R G++ ++ +   LL    +TG V     +  ++ + G++ + + +N M+
Sbjct: 205 EGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMV 264

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   +  +FE +   L+ ME     ADI TYN LIN Y R G +E+   L  S  ++ ++
Sbjct: 265 NALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGME 324

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P ++T+ + L    +   Y R  ++  EM+  G  P+  T   L+      D I +   +
Sbjct: 325 PGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEI 384

Query: 237 VRTMHKDMKTALPIYFNLYGEKGVARSN 264
              M +  +  LP   +     GV   N
Sbjct: 385 FDEMSR--RGVLPDLVSFSSLIGVLARN 410



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 84/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V  EM +LG+TP   ++  LL    +  N+ + + + ++M + G+ PD    +S
Sbjct: 343 YDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSS 402

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +  R G   +       ME+     D   Y ILI+ + R G +     +   + A+ 
Sbjct: 403 LIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARG 462

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              DVVT+ + L    +KK++     +F EM++ G  PD  T   LI     +  +++  
Sbjct: 463 CFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKAL 522

Query: 235 TLVRTM 240
            L   M
Sbjct: 523 NLFEAM 528



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 86/175 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M R  I P   S+  +L  +  +G + +   + +QM + G++P+    N+++ 
Sbjct: 556 AKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIK 615

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K  E L+ M       D  +YN LI+ Y +   +EK   L   +  + L+ 
Sbjct: 616 GYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQF 675

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +++T+   L  +  +   +   ++  +MI+ G  PDG T   LI+   S+D +++
Sbjct: 676 NIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 83/165 (50%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S    +A  + ++M   GI P + +   L+  Y ++G++ K    +++M  +G+ PD
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPD 641

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           +F  N++++ Y +    EK   ++  MEK     +I TYN+++N +   G +++ E + +
Sbjct: 642 SFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLR 701

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +    + PD  T++S +  +  +   +      +EM+  G  PD
Sbjct: 702 KMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 7/198 (3%)

Query: 33  MLINFLLLQHTPNLFVF---IFSIYFSD----AHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +LI  L L  TPN   +   +  I   D    A  +F+EM R G+ P + S   L+   +
Sbjct: 349 VLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLA 408

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           + G++ +      +M +SG+ PD  +   +++ + R G      ++   M       D+ 
Sbjct: 409 RNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVV 468

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN  +N   +       + LF  +  + + PD  T+T+ +  Y +     + L +FE M
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 206 IDAGCYPDGGTAKVLISA 223
           +     PD  T   LI  
Sbjct: 529 VRTNLKPDKVTYNTLIDG 546



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 1/166 (0%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F EM+R GI P    + +L+  + + G ++    + ++M   G   D    N+ LN   +
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
              F   + +   M +     D  T+  LI  Y + G ++K   LF+++    LKPD VT
Sbjct: 480 KKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVT 539

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSS 226
           + + +  + +     R  E++++MI     PD  +   VL   CSS
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSS 585



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +      +M+  G+   + ++  L+ AY + G V +   ++N     G++P     N+
Sbjct: 273 FENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNA 332

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN-ILINIYGRGGFIEKMEGLFQSLPAK 173
           +L    ++G++++ ++VL  M +     + +TYN +L+ I  R   +E  E +F  +  +
Sbjct: 333 ILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQE-IFDEMSRR 391

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            + PD+V+++S +   +R     + L  F EM  +G  PD     +LI  
Sbjct: 392 GVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDG 441



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA  + +EM   G    + ++   L    K    A  + + N+M + G+ PD +   +
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTT 507

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + G  +K   +  AM + +   D  TYN LI+ + + G + + + L+  +  K 
Sbjct: 508 LIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKD 567

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
           + PD +++ + L  +    L    L + ++M++ G  P+  T   LI   C S D
Sbjct: 568 IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 76/184 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +       G+ P + ++  +L    K G   + + V+ +M + GL P+    N++L
Sbjct: 310 EAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL 369

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R     + +E+   M +     D+ +++ LI +  R G + +    F+ +    + 
Sbjct: 370 VEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD V +T  +  + R       L++ +EM+  GC+ D  T    ++    +        L
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 237 VRTM 240
              M
Sbjct: 490 FNEM 493



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 75/185 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ E+ R GI   + +  +++ A  K          ++ M   G+  D    N+++N
Sbjct: 241 AWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLIN 300

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  E+  ++L +         + TYN ++    + G  ++ + +   +    L P
Sbjct: 301 AYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTP 360

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+ + L    R+       EIF+EM   G  PD  +   LI   +    + Q     
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 238 RTMHK 242
           R M +
Sbjct: 421 REMER 425


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 37/230 (16%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK--CEGVINQMHKSGL 105
           V+  S  F DA  + + M   GI P + S   L+ A SK+G +A      ++ ++ +SGL
Sbjct: 230 VYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGL 289

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    N++++   +    E    V   M       D+ TYN +++++GR G  E+ E 
Sbjct: 290 RPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAER 349

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRK----KLYRRCLE--------------------- 200
           LF  L  K   PD VT+ S L A++++    K+   C E                     
Sbjct: 350 LFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYG 409

Query: 201 ----------IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                     +++EM   GC PD  T  V+I +    D+I +   ++  M
Sbjct: 410 KMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDM 459



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 92/187 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F E+   G  P   ++  LL A++K GNV K E    ++ K+G K +    N+M+
Sbjct: 346 EAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMI 405

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++YG++G+ +    +   M       D  TY ++I+  G+   I +   + + +    LK
Sbjct: 406 HMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLK 465

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +V +++ + AY++        + F+ MI +G  PD     V++   +   + E++  L
Sbjct: 466 PTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRL 525

Query: 237 VRTMHKD 243
            RTM  D
Sbjct: 526 YRTMMND 532



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  VFEEM      P + ++  +++ + + G   + E +  ++ + G  PD    NS
Sbjct: 309 LEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNS 368

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + + G  +K+E     + K  +  +  TYN +I++YG+ G ++   GL+  + A  
Sbjct: 369 LLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVG 428

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
             PD VT+T  + +  +        ++ E+M DAG  P
Sbjct: 429 CTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKP 466



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%)

Query: 48   VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
              I      + + V  E++ +    +  + +L+L A++K G+V +   + N M  +G  P
Sbjct: 824  ALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLP 883

Query: 108  DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
            +  +  SM +L     +F  +E ++  ME   +  D+S +N L+N+Y   G  ++   ++
Sbjct: 884  NMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVY 943

Query: 168  QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
            QS+    L+PD  T+ + +  Y R         +  EM   G  P   + K L++A +  
Sbjct: 944  QSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKA 1003

Query: 228  DQIEQVTTLVRTMH 241
            +  EQ   L   M 
Sbjct: 1004 ELREQADQLFEEMR 1017



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 98/219 (44%), Gaps = 8/219 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  VF  ++  G   T++    ++  Y+++G       +++ MH  G+ PD    N++
Sbjct: 205 SIAEEVF--LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTL 262

Query: 116 LNLYGRLGQFEK--MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +N   + G        ++L  + +     D+ TYN LI+   +   +E    +F+ + A 
Sbjct: 263 INARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIAS 322

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PD+ T+ + ++ + R         +F E+++ G  PD  T   L+ A + E  +++V
Sbjct: 323 ECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKV 382

Query: 234 ----TTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY 268
                 LV+   K  +       ++YG+ G     +G Y
Sbjct: 383 EHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLY 421



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 17/182 (9%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EM+ +G TP   ++ +++ +  K   +A+   V+  M  +GLKP     ++++ 
Sbjct: 417 AVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALIC 476

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+    E+    M       D   Y ++++++ R G  EKM  L++++     +P
Sbjct: 477 AYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRP 536

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM---------------IDAGCYPDGGTAKVLIS 222
           D   +   L A +++       EI ++M               I A C   GG  K+L  
Sbjct: 537 DDDMYQVLLVALAKEDKCEEIEEIIQDMELLCQMSLGVISTILIKARCVSQGG--KLLKK 594

Query: 223 AC 224
           AC
Sbjct: 595 AC 596



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  V E+M   G+ PT+ +   L+ AY+K G  A  E   + M  SG+KPD      
Sbjct: 449 IAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLV 508

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           ML+++ R G+ EKM  +   M   +Y  D   Y +L+    +    E++E + Q +
Sbjct: 509 MLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDM 564



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +FEEM+          + +++  Y   GN +K E ++  M + G++P    ++ ++ 
Sbjct: 1009 ADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMT 1068

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--L 175
             YG  GQ  + E VL +++  S       Y+ + + Y + G  +   G+ + L  KR  +
Sbjct: 1069 SYGTAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDL--GIKKLLEMKRDGV 1126

Query: 176  KPDVVTWTSRLAAYS 190
            +PD   WT  + A S
Sbjct: 1127 EPDHQVWTCFIRAAS 1141



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 10/216 (4%)

Query: 25   YLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAY 84
            YLP    +  +  LL  H            F D   +  EM+  G  P +     LL  Y
Sbjct: 881  YLPNMHLYRSMTSLLCHHN----------RFRDVELMIAEMEGAGFKPDLSIFNSLLNMY 930

Query: 85   SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
            +  GN  +   V   + ++GL+PD    N+++ +Y R  + E+   +L  M K      +
Sbjct: 931  TAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKL 990

Query: 145  STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
             +Y  L+    +    E+ + LF+ + +K  + +   +   +  Y     + +   +   
Sbjct: 991  QSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAV 1050

Query: 205  MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            M + G  P   T  +L+++  +  Q  +   ++ ++
Sbjct: 1051 MKEDGIEPTIATMHILMTSYGTAGQPHEAENVLNSL 1086



 Score = 43.5 bits (101), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 12/171 (7%)

Query: 5   QCTTCDLCVAQRAPHSWNFNYLPYPSHFMLI----NFLLLQHTPNLFVFIFSIYFSDAHA 60
           +C+   LC  Q +  +    Y  Y    ML     N  L +H   +   + +  FS+A  
Sbjct: 643 ECSIILLCRKQTSISA----YEQYSQRLMLKYPGQNCNLYEHL--ITCLVEAELFSEACQ 696

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS-MLNLY 119
           VF +M+ +GI  +   +  +++ Y K G      G+++   +SG+  +       ++  Y
Sbjct: 697 VFCDMQFIGIEASKNIYESIISTYCKLGFPETAHGLMDDALQSGIPLNILSCRVIIIEAY 756

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           G +  +++ E ++  + + S   D   +N LI+ Y   G  EK   +F ++
Sbjct: 757 GNIKLWQQAEILVKGLRQAS-GIDRRIWNALIHAYAESGLYEKARAVFDNM 806



 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 45/96 (46%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            S A  +   MK  GI PT+ +  +L+T+Y   G   + E V+N +  S L+  T   +++
Sbjct: 1042 SKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVSTLPYSTV 1101

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
             + Y + G ++   + L  M++     D   +   I
Sbjct: 1102 FDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWTCFI 1137



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/161 (18%), Positives = 73/161 (45%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AY+++G   K   V + M K+G  P    +N M+      G+ +++  V+  ++   
Sbjct: 786 LIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMD 845

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +    ST  ++++ + + G + ++  ++  + A    P++  + S  +       +R   
Sbjct: 846 FKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVE 905

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +  EM  AG  PD      L++  ++    ++ T + +++
Sbjct: 906 LMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSI 946


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 86/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F+DA  +F EM   G+ P   +   L+  Y K GN+ K   +   M ++ LKPD    N+
Sbjct: 483 FADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNT 542

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+  + +E+   M +     D  +Y  ++N +   G + +   L   +  K 
Sbjct: 543 LIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKG 602

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P++VT  + +  Y R     +  E   +MI  G  PD  +   LI     E  +E+  
Sbjct: 603 IRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAF 662

Query: 235 TLVRTMHK 242
            L+  M K
Sbjct: 663 ILINEMEK 670



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 2/208 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +    F+ ++R G++ ++ +   LL    +TG V     +  ++ + G++ + + +N M+
Sbjct: 205 EGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMV 264

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   +  +FE +   L+ ME     ADI TYN LIN Y R G +E+   L  S  ++ ++
Sbjct: 265 NALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGME 324

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P ++T+ + L    +   Y R  ++  EM+  G  P+  T   L+      D I +   +
Sbjct: 325 PGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEI 384

Query: 237 VRTMHKDMKTALPIYFNLYGEKGVARSN 264
              M +  +  LP   +     GV   N
Sbjct: 385 FDEMSR--RGVLPDLVSFSSLIGVLARN 410



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 84/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V  EM +LG+TP   ++  LL    +  N+ + + + ++M + G+ PD    +S
Sbjct: 343 YDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSS 402

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +  R G   +       ME+     D   Y ILI+ + R G +     +   + A+ 
Sbjct: 403 LIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARG 462

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              DVVT+ + L    +KK++     +F EM++ G  PD  T   LI     +  +++  
Sbjct: 463 CFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKAL 522

Query: 235 TLVRTM 240
            L   M
Sbjct: 523 NLFEAM 528



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 86/175 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M R  I P   S+  +L  +  +G + +   + +QM + G++P+    N+++ 
Sbjct: 556 AKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIK 615

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K  E L+ M       D  +YN LI+ Y +   +EK   L   +  + L+ 
Sbjct: 616 GYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQF 675

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +++T+   L  +  +   +   ++  +MI+ G  PDG T   LI+   S+D +++
Sbjct: 676 NIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 83/165 (50%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S    +A  + ++M   GI P + +   L+  Y ++G++ K    +++M  +G+ PD
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPD 641

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           +F  N++++ Y +    EK   ++  MEK     +I TYN+++N +   G +++ E + +
Sbjct: 642 SFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLR 701

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +    + PD  T++S +  +  +   +      +EM+  G  PD
Sbjct: 702 KMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 7/198 (3%)

Query: 33  MLINFLLLQHTPNLFVF---IFSIYFSD----AHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +LI  L L  TPN   +   +  I   D    A  +F+EM R G+ P + S   L+   +
Sbjct: 349 VLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLA 408

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           + G++ +      +M +SG+ PD  +   +++ + R G      ++   M       D+ 
Sbjct: 409 RNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVV 468

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN  +N   +       + LF  +  + + PD  T+T+ +  Y +     + L +FE M
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 206 IDAGCYPDGGTAKVLISA 223
           +     PD  T   LI  
Sbjct: 529 VRTNLKPDKVTYNTLIDG 546



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 1/166 (0%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F EM+R GI P    + +L+  + + G ++    + ++M   G   D    N+ LN   +
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
              F   + +   M +     D  T+  LI  Y + G ++K   LF+++    LKPD VT
Sbjct: 480 KKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVT 539

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSS 226
           + + +  + +     R  E++++MI     PD  +   VL   CSS
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSS 585



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +      +M+  G+   + ++  L+ AY + G V +   ++N     G++P     N+
Sbjct: 273 FENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNA 332

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN-ILINIYGRGGFIEKMEGLFQSLPAK 173
           +L    ++G++++ ++VL  M +     + +TYN +L+ I  R   +E  E +F  +  +
Sbjct: 333 ILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQE-IFDEMSRR 391

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            + PD+V+++S +   +R     + L  F EM  +G  PD     +LI  
Sbjct: 392 GVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDG 441



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA  + +EM   G    + ++   L    K    A  + + N+M + G+ PD +   +
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTT 507

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + G  +K   +  AM + +   D  TYN LI+ + + G + + + L+  +  K 
Sbjct: 508 LIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKD 567

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
           + PD +++ + L  +    L    L + ++M++ G  P+  T   LI   C S D
Sbjct: 568 IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 76/184 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +       G+ P + ++  +L    K G   + + V+ +M + GL P+    N++L
Sbjct: 310 EAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL 369

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R     + +E+   M +     D+ +++ LI +  R G + +    F+ +    + 
Sbjct: 370 VEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD V +T  +  + R       L++ +EM+  GC+ D  T    ++    +        L
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 237 VRTM 240
              M
Sbjct: 490 FNEM 493



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 75/185 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ E+ R GI   + +  +++ A  K          ++ M   G+  D    N+++N
Sbjct: 241 AWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLIN 300

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  E+  ++L +         + TYN ++    + G  ++ + +   +    L P
Sbjct: 301 AYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTP 360

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+ + L    R+       EIF+EM   G  PD  +   LI   +    + Q     
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 238 RTMHK 242
           R M +
Sbjct: 421 REMER 425


>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 5/183 (2%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P + +   L+  + K   + +   V N+M  + + P     N++LN YG++G  E  
Sbjct: 290 GVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMG 349

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             V   M +    ADI TYN LI    + G  +K  G  + L  + L P+  T+++ +  
Sbjct: 350 VRVYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITG 409

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLV----RTMHKD 243
              +    R   I+  M+ +GC P+G T ++LISA C +ED    V  L     R M  D
Sbjct: 410 QCVRNNSERAFLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPD 469

Query: 244 MKT 246
           + T
Sbjct: 470 LST 472



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 87/187 (46%), Gaps = 1/187 (0%)

Query: 58  AHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A A + E++R   ++P + +  +++ AY   G V K   ++ +M   GL P+    N+++
Sbjct: 208 ALAFYREIRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLI 267

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y   G F    +V + M +     ++ T+N LIN + +   + +   +F  +    + 
Sbjct: 268 SGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVD 327

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P VVT+ + L  Y +       + ++EEM+  G   D  T   LI     + + ++    
Sbjct: 328 PSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGF 387

Query: 237 VRTMHKD 243
           VR + K+
Sbjct: 388 VRELDKE 394



 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/154 (18%), Positives = 64/154 (41%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+EEM R G+   + ++  L+    K G   K  G + ++ K  L P+    ++++    
Sbjct: 352 VYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQC 411

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
                E+   +  +M +   + +  T+ +LI+ + +    +    + + +  + + PD+ 
Sbjct: 412 VRNNSERAFLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLS 471

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           T +       R    +  L +  EM      PDG
Sbjct: 472 TMSELCDGLCRCGKNQLALALCSEMEVRRLLPDG 505


>gi|115479233|ref|NP_001063210.1| Os09g0423300 [Oryza sativa Japonica Group]
 gi|50725891|dbj|BAD33419.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|50726131|dbj|BAD33652.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113631443|dbj|BAF25124.1| Os09g0423300 [Oryza sativa Japonica Group]
 gi|125605742|gb|EAZ44778.1| hypothetical protein OsJ_29409 [Oryza sativa Japonica Group]
          Length = 962

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 1/169 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F+ A  VF   ++ G+   + S+  ++ A++K G+       + +M ++G        N 
Sbjct: 768 FNKAEKVFLMARKQGMADII-SYNTIIAAHAKNGDFRSMIYFVQRMQEAGFPVSLEAYNC 826

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+ YG+ GQ E+   VL  ME+     D  TYNI+INIYGR G+IE +  +   L ++ 
Sbjct: 827 MLDAYGKAGQLEEFAAVLQKMERAGCEFDHYTYNIMINIYGRKGWIEGVANVLAELKSRG 886

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +PD+ ++ + + AY    +    +++ +EM   G   D  T   LI+A
Sbjct: 887 GEPDLYSYNTLIKAYGIAGMPEDAVKLMQEMRIKGIAADRVTYTNLIAA 935



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 86/172 (50%), Gaps = 1/172 (0%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P + +  +L+  Y + GN+ + E    +M K G+K      ++M+ LY RLG F K E
Sbjct: 294 VQPNVSTVGMLMGLYQRIGNLPEAEFTFAKMRKCGIKC-VNAYSAMVTLYTRLGHFAKSE 352

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           EV+T M       ++  + + +N Y + G +E+ E + +SL  + +  +VV + + +  Y
Sbjct: 353 EVITLMNNDEVVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGY 412

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            +    ++ +E+F+ +  AG  PD  T + +I      D+ +Q     R + 
Sbjct: 413 GKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAILYYRKLR 464



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F +M++ GI   + ++  ++T Y++ G+ AK E VI  M+   + P+       L
Sbjct: 316 EAEFTFAKMRKCGI-KCVNAYSAMVTLYTRLGHFAKSEEVITLMNNDEVVPNMENWLVRL 374

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y + G+ E+ E VL ++     A ++  YN +I  YG+   ++K   +F  L +  L 
Sbjct: 375 NAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDMQKAMEVFDRLKSAGLA 434

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+ S +  + R   Y++ +  + ++ ++G  P+      +I+  +  D  E  T +
Sbjct: 435 PDETTYRSMIEGFGRADKYKQAILYYRKLRNSGFKPNASNFYTMINLLARHDDSEGATEI 494

Query: 237 VRTMH 241
           +  M 
Sbjct: 495 LEDMR 499



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 57  DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           DA  V E+M K+  I P     + +L  Y K G + K       + KS ++ D  + N +
Sbjct: 664 DACLVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLSDTYYWILKSQVELDEAMYNCI 723

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  GR    +++  +   M +  + A+  T N+L++IYG+ G   K E +F  +  K+ 
Sbjct: 724 INCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFL-MARKQG 782

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA-KVLISACSSEDQIEQVT 234
             D++++ + +AA+++   +R  +   + M +AG +P    A   ++ A     Q+E+  
Sbjct: 783 MADIISYNTIIAAHAKNGDFRSMIYFVQRMQEAG-FPVSLEAYNCMLDAYGKAGQLEEFA 841

Query: 235 TLVRTMHK-----DMKTALPIYFNLYGEKG 259
            +++ M +     D  T   I  N+YG KG
Sbjct: 842 AVLQKMERAGCEFDHYT-YNIMINIYGRKG 870



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 1/186 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F+ +  V   M    + P M++ ++ L AY + G + + E V+  +   G+  +    N
Sbjct: 347 HFAKSEEVITLMNNDEVVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYN 406

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  YG++   +K  EV   ++    A D +TY  +I  +GR    ++    ++ L   
Sbjct: 407 TVITGYGKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAILYYRKLRNS 466

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KP+   + + +   +R        EI E+M  AGC        VL+ A  S  ++ +V
Sbjct: 467 GFKPNASNFYTMINLLARHDDSEGATEILEDMRAAGCQC-SSIVTVLVRAYGSVGRMHKV 525

Query: 234 TTLVRT 239
             +++ 
Sbjct: 526 LQILKA 531



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 2/195 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM + G      +  +LL  Y K G   K E V     K G+  D    N+++  + 
Sbjct: 739 IFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFLMARKQGM-ADIISYNTIIAAHA 797

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G F  M   +  M++  +   +  YN +++ YG+ G +E+   + Q +     + D  
Sbjct: 798 KNGDFRSMIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKMERAGCEFDHY 857

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  Y RK        +  E+   G  PD  +   LI A       E    L++ M
Sbjct: 858 TYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYGIAGMPEDAVKLMQEM 917

Query: 241 H-KDMKTALPIYFNL 254
             K +      Y NL
Sbjct: 918 RIKGIAADRVTYTNL 932



 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/187 (17%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ +  + G       + NQM KS   P+  +  SM++++  + +F   E +   ++  
Sbjct: 581 ILICSCKEAGCCDDAVRIYNQMPKSATHPNLRIYCSMIDVFSIMERFTDAEALYLELKAS 640

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLP-AKRLKPDVVTWTSRLAAYSRKKLYRR 197
           S   D+  Y++++ +Y + G  E    + + +   K + PD   +   L  Y +  L  +
Sbjct: 641 SCVLDMIAYSVIVRMYTKAGRPEDACLVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEK 700

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM----HKDMKTALPIYFN 253
             + +  ++ +    D      +I+ C     +++++ +   M    H      L +  +
Sbjct: 701 LSDTYYWILKSQVELDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLD 760

Query: 254 LYGEKGV 260
           +YG+ G+
Sbjct: 761 IYGKAGL 767


>gi|297738433|emb|CBI27634.3| unnamed protein product [Vitis vinifera]
          Length = 355

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 88/175 (50%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +F+     S A  +FE    +G+ P + ++  ++TA+ K G   +  GV ++M +   
Sbjct: 155 LSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMGEKVC 214

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            PD    N ++   G++G+ +    VL  + K     DI  YN LIN  G+ G I++   
Sbjct: 215 PPDIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYLDIVMYNTLINALGKAGRIDEATK 274

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           LF+ + +  + PDVVT+ + +  +++    +   +  + M+DAGC P+  T   L
Sbjct: 275 LFEQMRSSGINPDVVTFNTLIEIHAKAGQLKAAYKFLKLMLDAGCSPNHVTDTTL 329



 Score = 37.0 bits (84), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           KG  + DI   N  ++I+   G +     LF+      + P + T+ S + A+ +K  + 
Sbjct: 141 KGIDSFDIDMVNTYLSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFN 200

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLI 221
               +F EM +  C PD  T  V+I
Sbjct: 201 EAWGVFHEMGEKVCPPDIATYNVII 225


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 34  LINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           LI+       PN+FV+   I         S+A ++  E+++  I P + ++ +L+     
Sbjct: 321 LIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCG 380

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
              + + +G++ +M K G  P+    N++++ Y + G  EK  EV + M +     +I T
Sbjct: 381 VDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIIT 440

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           ++ LI+ Y + G +E   GL+  +  K L PDVV +T+ +  + +    +    + +EM 
Sbjct: 441 FSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +AG +P+  T   LI     + +I     L
Sbjct: 501 EAGLHPNVFTLSCLIDGLCKDGRISDAIKL 530



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 4/191 (2%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           TPN+F  +  I FS+   V E +    ++ + P M++  ++L    K G       V   
Sbjct: 125 TPNVF-GVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGD 183

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G  P+     ++++   R G F K   +   M +      +  Y ILI        
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESR 243

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I + E +F+++    + P++ T+ + +  Y +    ++ LE++ EM+  G  P+  T  +
Sbjct: 244 ISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGI 303

Query: 220 LISACSSEDQI 230
           LI      D++
Sbjct: 304 LIDGLCKTDEM 314



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 74/186 (39%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A ++F  M+  G+ P + ++  ++  Y K  +V K   +  +M   GL P+      
Sbjct: 244 ISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGI 303

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  +     + L  M       +I  YN LI+ Y + G + +   L   +    
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDV T++  +              + +EM   G  P+  T   LI     E  +E+  
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 235 TLVRTM 240
            +   M
Sbjct: 424 EVCSQM 429



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V++++  S   P+ F +  ++  +  +G    +EE L    K      +   N++++   
Sbjct: 115 VLSRLESSKFTPNVFGV--LIIAFSEMGL---VEEALWVYYKMDVLPAMQACNMVLDGLV 169

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  + M  ++  + A+   P+VVT+ + +    R+  + +   +F+EMI+   +P   
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
              +LI     E +I +  ++ RTM 
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMR 255



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 13/179 (7%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M   GI P + +   L+  Y K G +    G+  +M   GL PD     ++++
Sbjct: 422 AIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALID 481

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF---------- 167
            + + G  ++   +   M++     ++ T + LI+   + G I     LF          
Sbjct: 482 GHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTG 541

Query: 168 ---QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
                L      P+ V +T+ +          +  + F +M  +G  PD  T  V+I  
Sbjct: 542 SKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600



 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 60  AVFEEMKRL---GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +VF  + RL     TP +    +L+ A+S+ G V   E  +   +K  + P     N +L
Sbjct: 111 SVFNVLSRLESSKFTPNVFG--VLIIAFSEMGLV---EEALWVYYKMDVLPAMQACNMVL 165

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+F+ M +V   M     + ++ TY  LI+   R G   K   LF  +  K++ 
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF 225

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           P VV +T  +     +        +F  M ++G  P+
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPN 262


>gi|125563762|gb|EAZ09142.1| hypothetical protein OsI_31412 [Oryza sativa Indica Group]
          Length = 962

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 1/169 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F+ A  VF   ++ G+   + S+  ++ A++K G+       + +M ++G        N 
Sbjct: 768 FNKAEKVFLMARKQGMADII-SYNTIIAAHAKNGDFRSMIYFVQRMQEAGFPVSLEAYNC 826

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+ YG+ GQ E+   VL  ME+     D  TYNI+INIYGR G+IE +  +   L ++ 
Sbjct: 827 MLDAYGKAGQLEEFAAVLQKMERAGCEFDHYTYNIMINIYGRKGWIEGVANVLAELKSRG 886

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +PD+ ++ + + AY    +    +++ +EM   G   D  T   LI+A
Sbjct: 887 GEPDLYSYNTLIKAYGIAGMPEDAVKLMQEMRIKGIAADRVTYTNLIAA 935



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 86/172 (50%), Gaps = 1/172 (0%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P + +  +L+  Y + GN+ + E    +M K G+K      ++M+ LY RLG F K E
Sbjct: 294 VQPNVSTVGMLMGLYQRIGNLPEAEFTFAKMRKCGIKC-VNAYSAMVTLYTRLGHFAKSE 352

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           EV+T M       ++  + + +N Y + G +E+ E + +SL  + +  +VV + + +  Y
Sbjct: 353 EVITLMNNDEVVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGY 412

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            +    ++ +E+F+ +  AG  PD  T + +I      D+ +Q     R + 
Sbjct: 413 GKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAILYYRKLR 464



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F +M++ GI   + ++  ++T Y++ G+ AK E VI  M+   + P+       L
Sbjct: 316 EAEFTFAKMRKCGI-KCVNAYSAMVTLYTRLGHFAKSEEVITLMNNDEVVPNMENWLVRL 374

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y + G+ E+ E VL ++     A ++  YN +I  YG+   ++K   +F  L +  L 
Sbjct: 375 NAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDMQKAMEVFDRLKSAGLA 434

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+ S +  + R   Y++ +  + ++ ++G  P+      +I+  +  D  E  T +
Sbjct: 435 PDETTYRSMIEGFGRADKYKQAILYYRKLRNSGFKPNASNFYTMINLLARHDDSEGATEI 494

Query: 237 VRTMH 241
           +  M 
Sbjct: 495 LEDMR 499



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 57  DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           DA  V E+M K+  I P     + +L  Y K G + K       + KS ++ D  + N +
Sbjct: 664 DACLVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLSDTYYWILKSQVELDEAMYNCI 723

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  GR    +++  +   M +  + A+  T N+L++IYG+ G   K E +F  +  K+ 
Sbjct: 724 INCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFL-MARKQG 782

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA-KVLISACSSEDQIEQVT 234
             D++++ + +AA+++   +R  +   + M +AG +P    A   ++ A     Q+E+  
Sbjct: 783 MADIISYNTIIAAHAKNGDFRSMIYFVQRMQEAG-FPVSLEAYNCMLDAYGKAGQLEEFA 841

Query: 235 TLVRTMHK-----DMKTALPIYFNLYGEKG 259
            +++ M +     D  T   I  N+YG KG
Sbjct: 842 AVLQKMERAGCEFDHYT-YNIMINIYGRKG 870



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 1/186 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F+ +  V   M    + P M++ ++ L AY + G + + E V+  +   G+  +    N
Sbjct: 347 HFAKSEEVITLMNNDEVVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYN 406

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  YG++   +K  EV   ++    A D +TY  +I  +GR    ++    ++ L   
Sbjct: 407 TVITGYGKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAILYYRKLRNS 466

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KP+   + + +   +R        EI E+M  AGC        VL+ A  S  ++ +V
Sbjct: 467 GFKPNASNFYTMINLLARHDDSEGATEILEDMRAAGCQC-SSIVTVLVRAYGSVGRMHKV 525

Query: 234 TTLVRT 239
             +++ 
Sbjct: 526 LQILKA 531



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 2/195 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM + G      +  +LL  Y K G   K E V     K G+  D    N+++  + 
Sbjct: 739 IFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFLMARKQGM-ADIISYNTIIAAHA 797

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G F  M   +  M++  +   +  YN +++ YG+ G +E+   + Q +     + D  
Sbjct: 798 KNGDFRSMIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKMERAGCEFDHY 857

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  Y RK        +  E+   G  PD  +   LI A       E    L++ M
Sbjct: 858 TYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYGIAGMPEDAVKLMQEM 917

Query: 241 H-KDMKTALPIYFNL 254
             K +      Y NL
Sbjct: 918 RIKGIAADRVTYTNL 932



 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 33/187 (17%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ +  + G       + NQM KS   P+  +  SM++++  + +F   E +   ++  
Sbjct: 581 ILICSCKEAGCCDDAVRIYNQMPKSATHPNLRIYCSMIDVFSIMERFTDAEALYLELKAS 640

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLP-AKRLKPDVVTWTSRLAAYSRKKLYRR 197
           S   D+  Y++++ +Y + G  E    + + +   K + PD   +   L  Y +  L  +
Sbjct: 641 SCVLDMIAYSVIVRMYTKAGRPEDACLVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEK 700

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM----HKDMKTALPIYFN 253
             + +  ++ +    D      +I+ C     +++++ +   M    H      L +  +
Sbjct: 701 LSDTYYWILKSQVELDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLD 760

Query: 254 LYGEKGV 260
           +YG+ G+
Sbjct: 761 IYGKAGL 767


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 91/187 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      +EE+   G   ++    +L+  + K G++   + V N + K GL+P     N
Sbjct: 116 YFKLVWGFYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFN 175

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + +AM       D+ TY++LIN   +   ++   GLF  +  K
Sbjct: 176 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDK 235

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +A + + +     +EI+++M+     PD  T   LI     +  ++Q 
Sbjct: 236 GLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 296 HDLIDEM 302



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 83/188 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA+ +F+EM   G+ P   +   L+  + K   V     +  QM    L PD    N++
Sbjct: 223 DDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G  ++  +++  M       D  TY  LI+   + G +E      + +  + +
Sbjct: 283 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENI 342

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D V +T+ ++   ++  Y    ++  EM+  G  PD GT  ++I+    +  +   + 
Sbjct: 343 RLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSK 402

Query: 236 LVRTMHKD 243
           L++ M +D
Sbjct: 403 LLKEMQRD 410



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 7/146 (4%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+L  +   IY          AH + +EM   G+ P   ++  L+    K G++     
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFE 332

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
              +M +  ++ D     ++++   + G++   E+VL  M       D  TY ++IN + 
Sbjct: 333 HRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFC 392

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVT 181
           + G +     L + +      P VV+
Sbjct: 393 KKGDVWTGSKLLKEMQRDGHVPSVVS 418


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 82/159 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F +M    I P + +  +L+ A+ K G V + +  +  M K G+KPD    NS
Sbjct: 292 LKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNS 351

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  + +  K + +   M      A++ +Y+I+IN + +   +++   LF+ +  K+
Sbjct: 352 LMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQ 411

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + P+V+T++S +    +       LE+ +EM D G  PD
Sbjct: 412 IFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPD 450



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 87/186 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  ++ EM    I P + ++  L+  +   G +    G+ N+M    + PD +  N +
Sbjct: 258 NDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNIL 317

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+ ++ +  L  M K     D+ TYN L++ Y     + K + +F ++  + +
Sbjct: 318 VDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGV 377

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             +V +++  +  + + K+  + +++F+EM     +P+  T   LI       +I     
Sbjct: 378 TANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALE 437

Query: 236 LVRTMH 241
           L   MH
Sbjct: 438 LNDEMH 443



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F  M   G+T  ++S+ +++  + K   V +   +  +MH   + P+    +S+++
Sbjct: 365 AKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLID 424

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADIST----------------YNILINIYGRGGFIE 161
              + G+     E+   M       DI T                Y ILI+   +GG +E
Sbjct: 425 GLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLE 484

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
               +F+ L  K     V T+T  +  +  K L+   + +  +M D  C P+  T +++I
Sbjct: 485 DARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIII 544

Query: 222 SACSSEDQ 229
            +    D+
Sbjct: 545 RSLFDNDE 552


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 4/199 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF++M R G+ P +K+   +L        ++K + V   M + G+KP     N+ML+ Y 
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 121 RLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           + G+ ++  E+L+ M E+G Y  D+ TYN+L+N   + G +E+ +GL + +    L    
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDV-TYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSA 285

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+   +  + +K L+    ++ EEM++   +P   T   L+       Q+  V      
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSD 345

Query: 240 MHKDMKTALPIYFN--LYG 256
           M K   T   + FN  LYG
Sbjct: 346 MLKSKFTPDIVSFNSLLYG 364



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 8/182 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  + +EM   G+ P + ++ +L+    K G V+   G  N+M   GLKPD F  N
Sbjct: 405 YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYN 464

Query: 114 SMLNLYGRLGQ----FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
           + +    ++      F   EE+L A     +  D+ TYN+ ++   + G  E+   L ++
Sbjct: 465 TRIVGEMKIADTSVAFSMQEEMLAA----GFPPDVITYNVFVHALCQQGNFEEACDLLEN 520

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           + +  L PD VT+TS +  + +    R+  E+F EM+  G  P   T  VLI A +++  
Sbjct: 521 MVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQM 580

Query: 230 IE 231
           ++
Sbjct: 581 LD 582



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 78/182 (42%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M +   TP + S   LL  Y +TG +++   + +++    L P     N++++    
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM 402

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  +    +   M       DI TY IL+N   + G++    G F  + +K LKPD   
Sbjct: 403 WGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFA 462

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + +R+    +         + EEM+ AG  PD  T  V + A   +   E+   L+  M 
Sbjct: 463 YNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMV 522

Query: 242 KD 243
            D
Sbjct: 523 SD 524



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 80/185 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A ++ EEM   G  P + ++ + + A  + GN  +   ++  M   GL PD     S+
Sbjct: 477 SVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSI 536

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + + G   K  EV   M     A  + TY +LI+ +     ++     F  +  K +
Sbjct: 537 INGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSV 596

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             +V+T+ + +      +      + F+EM + G  P+  +  +LI+   +    E+   
Sbjct: 597 PANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALR 656

Query: 236 LVRTM 240
           L R M
Sbjct: 657 LYREM 661



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 22/224 (9%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P++F +   +       Y S A   F EM   G+ P   ++   +    K  + +    +
Sbjct: 423 PDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSM 482

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M  +G  PD    N  ++   + G FE+  ++L  M       D  TY  +IN + +
Sbjct: 483 QEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVK 542

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G + K   +F  + +K + P VVT+T  + A++ K++       F +M++     +  T
Sbjct: 543 NGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVIT 602

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGV 260
              +I+             + R M +  K     YF+   EKG+
Sbjct: 603 YNAIING----------LCMTRRMDEAYK-----YFDEMEEKGI 631



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  V+  M++ GI PT+ ++  +L +Y K G V +   ++++M + G  P+    N 
Sbjct: 196 LSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNV 255

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G+ E+ + ++  M          TYN LIN + + G   +   L + +  +R
Sbjct: 256 LVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRR 315

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             P + T+ + +    +          F +M+ +   PD
Sbjct: 316 AFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPD 354



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 8/216 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  + E M   G+ P   ++  ++  + K G++ K   V N+M   G+ P       
Sbjct: 511 FEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTV 570

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +      +      + M + S  A++ TYN +IN       +++    F  +  K 
Sbjct: 571 LIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKG 630

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+  ++T  +        +   L ++ EM+D    PD  T  V +     + Q+  V 
Sbjct: 631 ILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVHAVQ 690

Query: 235 ---TLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
              +L++ +  ++   L     L   K V   N  +
Sbjct: 691 CVESLIQNVEDNINVRL-----LRPRKNVMEENFAR 721



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 64/159 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  + EEM      PT+ ++  L+    K   V       + M KS   PD    NS
Sbjct: 301 FVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNS 360

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y R G   +   +   ++       + TYN LI+     G+++    L + +  + 
Sbjct: 361 LLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQG 420

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L PD+ T+T  +    +          F EM+  G  PD
Sbjct: 421 LFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPD 459


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +F +M R G+     ++  L+  + +  +    + V  QM   G+ P+    N++L
Sbjct: 398 DGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLL 457

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+ EK   V   ++K     DI TYNI+     + G +E    LF SL  K +K
Sbjct: 458 DGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVK 517

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV+ + + ++ + +K L      +F +M + G  PD GT   LI A   +        L
Sbjct: 518 PDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 577

Query: 237 VRTMH 241
           ++ M 
Sbjct: 578 IKEMR 582



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 92/189 (48%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +  +M    I P + +   L+ A++K G + + E + ++M +  + P+    NS
Sbjct: 291 WSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNS 350

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAK 173
           ++N +    + ++ +++ T M       D+ TYN LIN + +    ++ ME LF+ +  +
Sbjct: 351 LINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME-LFRDMSRR 409

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L  + VT+T+ +  + +         +F++M+  G +P+  T   L+       ++E+ 
Sbjct: 410 GLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 469

Query: 234 TTLVRTMHK 242
             +   + K
Sbjct: 470 MVVFEYLQK 478



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 87/190 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  +F EM   GI P + ++  L++     G  +    +++ M +  + P+    N
Sbjct: 255 HVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFN 314

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++ + + G+  + E++   M + S   +I TYN LIN +     +++ + +F  + +K
Sbjct: 315 SLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 374

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDVVT+ + +  + + K     +E+F +M   G   +  T   LI         +  
Sbjct: 375 DCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNA 434

Query: 234 TTLVRTMHKD 243
             + + M  D
Sbjct: 435 QMVFKQMVSD 444



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 83/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M++  I   +  +  ++ +  K  +V     +  +M   G++PD F  +S+++
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLIS 283

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++     +L+ M +     ++ T+N LI+ + + G + + E LF  +  + + P
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++VT+ S +  +          +IF  M+   C PD  T   LI+      ++     L 
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403

Query: 238 RTMHK 242
           R M +
Sbjct: 404 RDMSR 408



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 84/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A A+ ++M  +G  P   +   L+    +    ++   ++ +M   G +PD     +
Sbjct: 151 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 210

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G+ +    +L  MEKG   AD+  Y+ +I+   +   ++    LF  +  K 
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDV T++S ++       +     +  +M++    P+  T   LI A + E ++ +  
Sbjct: 271 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330

Query: 235 TLVRTM 240
            L   M
Sbjct: 331 KLFDEM 336



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 84/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A A+ E M   G  P + ++  ++    K G       ++N+M K  ++ D  + +++
Sbjct: 187 SEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTV 246

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +    +    + T M+      D+ TY+ LI+     G       L   +  +++
Sbjct: 247 IDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI 306

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+ S + A++++       ++F+EMI     P+  T   LI+     D++++   
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 366

Query: 236 LVRTM 240
           +   M
Sbjct: 367 IFTLM 371



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 76/193 (39%)

Query: 50  IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
           +  +   +A  +F EM +    P++     LL+A +K            +M   G+  + 
Sbjct: 41  LLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNL 100

Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
           +  N M+N   R  Q      +L  M K  Y   I T N L+N +  G  I +   L   
Sbjct: 101 YTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 160

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +     +PD VT+T+ +    +       + + E M+  GC PD  T   +I+      +
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220

Query: 230 IEQVTTLVRTMHK 242
            +    L+  M K
Sbjct: 221 PDLALNLLNKMEK 233



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/176 (15%), Positives = 75/176 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM +  I P + ++  L+  +     + + + +   M      PD    N+++
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + +  +     E+   M +     +  TY  LI+ + +    +  + +F+ + +  + 
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           P+++T+ + L    +     + + +FE +  +   PD  T  ++        ++E 
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503



 Score = 44.3 bits (103), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFE +++  + P + ++ ++     K G V     +   +   G+KPD    N+M++
Sbjct: 469 AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS 528

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G  E+   +   M++     D  TYN LI  + R G       L + + + R   
Sbjct: 529 GFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAG 588

Query: 178 DVVTW 182
           D  T+
Sbjct: 589 DASTY 593



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +F  +   G+ P + ++  +++ + K G   +   +  +M + G  PD+   N+++
Sbjct: 503 DGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLI 562

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG----GFIE 161
             + R G      E++  M    +A D STY ++ ++   G    GF+E
Sbjct: 563 RAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHDGRLDKGFLE 611


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 1/186 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A+ VF+ M R    P ++S+  L+ A+    N+ +   V N+M ++GLKPD  V N+M+
Sbjct: 54  EANQVFDRM-RDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMI 112

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  +  +  ++   M+    A ++ TY +LI  + + G ++     F+ +     +
Sbjct: 113 EGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQ 172

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV T+T  L  Y   K   R   + EEM   GC PDG T   LI   ++ +  +    +
Sbjct: 173 PDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARI 232

Query: 237 VRTMHK 242
            + M K
Sbjct: 233 YKKMIK 238



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 2/192 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FE MK  G  P + ++ +L+  + K G +        +M   G +PD      +L
Sbjct: 123 EAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 182

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG   + +++  +L  M +     D  TYN LI +       +    +++ +  K L+
Sbjct: 183 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLE 242

Query: 177 PDVVTWTSRLAAY-SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           P + T+   + +Y    + Y     ++EEM   G  PD  +  V I+      + E+   
Sbjct: 243 PTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACK 302

Query: 236 LVRTM-HKDMKT 246
            +  M  K MKT
Sbjct: 303 YIEEMIQKGMKT 314


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 104/209 (49%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F + + + +EM R G  P   ++  L+ +Y +   + +   V NQM ++G +PD     +
Sbjct: 375 FGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCT 434

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +   ++   M++   + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 435 LIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQG 494

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +A +++ + Y   L+++ +M +AG  PD  T  +++        +E+  
Sbjct: 495 CTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAE 554

Query: 235 TLVRTMH-KDMKTALPIY---FNLYGEKG 259
            +   M  K+     P+Y    +L+G+ G
Sbjct: 555 GVFAEMQRKNWVPDEPVYGLLVDLWGKAG 583



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+ F +   I       +   AH +F EM   G TP + +  +++  ++K  N      
Sbjct: 461 SPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALK 520

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M  +G +PD    + ++ + G  G  E+ E V   M++ ++  D   Y +L++++G
Sbjct: 521 LYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWG 580

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G ++K    +Q++    L+P+V T  S L+ + R         + + M+  G +P   
Sbjct: 581 KAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQ 640

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 641 TYTLLLSCCT 650



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 35/222 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  VF +M+  G  P   ++  L+  ++K G +     +  +M ++GL PDTF  +
Sbjct: 409 YLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYS 468

Query: 114 SMLNLYGRLGQ-----------------------------------FEKMEEVLTAMEKG 138
            ++N  G+ G                                    +E   ++   M+  
Sbjct: 469 VIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNA 528

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            +  D  TY+I++ + G  GF+E+ EG+F  +  K   PD   +   +  + +     + 
Sbjct: 529 GFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKA 588

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + ++ M+ AG  P+  T   L+S      ++ +   L+++M
Sbjct: 589 WQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSM 630



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 62/121 (51%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+   GR  QF ++ ++L  M +     +  TYN LI+ YGR  +++
Sbjct: 352 QPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLK 411

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F  +     +PD VT+ + +  +++       +++++ M +AG  PD  T  V+I
Sbjct: 412 EAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVII 471

Query: 222 S 222
           +
Sbjct: 472 N 472


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 34  LINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           LI+       PN+FV+   I         S+A ++  E+++  I P + ++ +L+     
Sbjct: 321 LIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCG 380

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
              + + +G++ +M K G  P+    N++++ Y + G  EK  EV + M +     +I T
Sbjct: 381 VDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIIT 440

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           ++ LI+ Y + G +E   GL+  +  K L PDVV +T+ +  + +    +    + +EM 
Sbjct: 441 FSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +AG +P+  T   LI     + +I     L
Sbjct: 501 EAGLHPNVFTLSCLIDGLCKDGRISDAIKL 530



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 4/193 (2%)

Query: 41  QHTPNLFVFIFSIYFSDAHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           + TPN+F  +  I FS+   V E +    ++ + P M++  ++L    K G       V 
Sbjct: 123 KFTPNVF-GVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVY 181

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
             M   G  P+     ++++   R G F K   +   M +      +  Y ILI      
Sbjct: 182 GDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGE 241

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
             I + E +F+++    + P++ T+ + +  Y +    ++ LE+++EM+  G  P+  T 
Sbjct: 242 SRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTF 301

Query: 218 KVLISACSSEDQI 230
            +LI      D++
Sbjct: 302 GILIDGLCKTDEM 314



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 74/186 (39%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A ++F  M+  G+ P + ++  ++  Y K  +V K   +  +M   GL P+      
Sbjct: 244 ISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGI 303

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  +     + L  M       +I  YN LI+ Y + G + +   L   +    
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDV T++  +              + +EM   G  P+  T   LI     E  +E+  
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 235 TLVRTM 240
            +   M
Sbjct: 424 EVCSQM 429



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 15/122 (12%)

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           LI++Y   G +     +F  +P+K L    ++WTS ++AY   +   + L++F +M    
Sbjct: 672 LISMYSATGNVADAHNMFDEIPSKNL----ISWTSVISAYVDNQRPNKALQLFRQMQMDD 727

Query: 210 CYPDGGTAKVLISACS---SEDQIEQVTTLVRTMHKDMKTALPI---YFNLY---GEKGV 260
             PD  T  V +SAC+   + D  E +   +R  H+ + T L +     N+Y   GE G 
Sbjct: 728 VQPDIVTVTVALSACADLGALDMGEWIHAYIR--HRGLDTDLCLNNSLINMYSKCGEIGT 785

Query: 261 AR 262
           AR
Sbjct: 786 AR 787



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V++++  S   P+ F +  ++  +  +G    +EE L    K      +   N++++   
Sbjct: 115 VLSRLESSKFTPNVFGV--LIIAFSEMGL---VEEALWVYYKMDVLPAMQACNMVLDGLV 169

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  + M  ++  + A+   P+VVT+ + +    R+  + +   +F+EMI+   +P   
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
              +LI     E +I +  ++ RTM 
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMR 255



 Score = 40.4 bits (93), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 20/182 (10%)

Query: 31  HFMLINF----LLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           H ++INF    ++   T  + ++  +   +DAH +F+E+     +  + S   +++AY  
Sbjct: 654 HALVINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIP----SKNLISWTSVISAYVD 709

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
                K   +  QM    ++PD   +   L+    LG  +  E +   +       D+  
Sbjct: 710 NQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCL 769

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLK---PDVVTWTSRLAAYSRKKLYRRCLEIFE 203
            N LIN+Y + G I           A+R     P+ VT+   L A S   L     + F 
Sbjct: 770 NNSLINMYSKCGEIGT---------ARRFSLVLPNDVTFMGVLMACSHAGLVEEGKQHFR 820

Query: 204 EM 205
            M
Sbjct: 821 SM 822


>gi|255555093|ref|XP_002518584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542429|gb|EEF43971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 377

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 3/188 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVINSML 116
           AH +F+EM  L  T T++S   LL+A   +G   K +G +     K G+ PD    N ++
Sbjct: 109 AHRLFDEMPDLKCTRTVRSFNALLSACIDSGKFDKVQGFLRDFPVKLGITPDVVSFNIVI 168

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAKRL 175
             Y  +G  +    VL  MEK     D+ T+N L+N  YG G F++  E ++  + +K +
Sbjct: 169 KGYCEIGNLDSGVLVLCEMEKRGIEPDLITFNTLLNGFYGNGRFVDG-EKIWTLMESKNV 227

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+V ++ SRL     +      +E+  EM + G  PD  +   +I    +++ +E+V  
Sbjct: 228 VPNVRSYNSRLRGLELENRVMEAVELLGEMENKGIRPDVMSYNAVIKGLCNDENVEEVKN 287

Query: 236 LVRTMHKD 243
             R + ++
Sbjct: 288 WYRKLKEN 295



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 38/222 (17%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY---GRLG 123
           +LGITP + S  +++  Y + GN+     V+ +M K G++PD    N++LN +   GR  
Sbjct: 154 KLGITPDVVSFNIVIKGYCEIGNLDSGVLVLCEMEKRGIEPDLITFNTLLNGFYGNGRFV 213

Query: 124 QFEK------------------------------ME--EVLTAMEKGSYAADISTYNILI 151
             EK                              ME  E+L  ME      D+ +YN +I
Sbjct: 214 DGEKIWTLMESKNVVPNVRSYNSRLRGLELENRVMEAVELLGEMENKGIRPDVMSYNAVI 273

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
                   +E+++  ++ L      PD VT+ + +    +K      +E+  E+++ G  
Sbjct: 274 KGLCNDENVEEVKNWYRKLKENGRMPDRVTYMTLIPYLRQKGDLDGAVELCIEIMNKGLL 333

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLV---RTMHKDMKTALPI 250
            +    + ++       ++E+   LV   ++     K +LP+
Sbjct: 334 VNATLFQHVVDELVKLSRVEEAKDLVERGKSNKHSYKLSLPL 375


>gi|255548135|ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545604|gb|EEF47108.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 898

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 87/175 (49%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +F+     S A  +FE    +G+ P   ++  +++++ K G  ++   V+NQM +   
Sbjct: 624 LSIFLAKGKLSVACKLFEIFSDMGVNPVSYTYNSIMSSFVKKGYFSEAWDVLNQMGEKVC 683

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
             D    N ++   G++G+ +    VL  + K     DI  YN LIN  G+ G I+++  
Sbjct: 684 PSDIATYNLIIQGLGKMGRADLASSVLDKLMKQGGYLDIVMYNTLINALGKAGRIDEVRK 743

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           LF+ +    + PDVVT+ + +  +++    +   +  + M+DAGC P+  T   L
Sbjct: 744 LFEQMKTSGINPDVVTYNTLIEVHTKAGRLKDAYKFLKMMLDAGCLPNHVTDTTL 798



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 84/188 (44%)

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           FS    DA  V+EE+K  G  P   ++ +++   SK+  +     + ++M  +G  PDT 
Sbjct: 312 FSGKVKDALVVYEELKISGHEPDAFTYRIIIEGCSKSYRMNDATKIFSEMQYNGFVPDTT 371

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           V NS+L+   +  +  +  ++   M +    A   TYNILI+   + G       LF  L
Sbjct: 372 VYNSLLDGMFKARKVTEACQLFEKMVQDGVRASSWTYNILIDGLCKNGRSAAGYSLFCDL 431

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
             K    D +T++  +    R+   +  L + EEM + G   D  T   L+ A   + + 
Sbjct: 432 KKKGKFVDAITYSIIVLLLCREGQLKEALSLVEEMEERGFVVDLVTITSLLIAFHKQGRW 491

Query: 231 EQVTTLVR 238
           +    L++
Sbjct: 492 DWTEKLMK 499



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 7/179 (3%)

Query: 42  HTPNLFVFIF-------SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P+ F +         S   +DA  +F EM+  G  P    +  LL    K   V +  
Sbjct: 331 HEPDAFTYRIIIEGCSKSYRMNDATKIFSEMQYNGFVPDTTVYNSLLDGMFKARKVTEAC 390

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            +  +M + G++  ++  N +++   + G+      +   ++K     D  TY+I++ + 
Sbjct: 391 QLFEKMVQDGVRASSWTYNILIDGLCKNGRSAAGYSLFCDLKKKGKFVDAITYSIIVLLL 450

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            R G +++   L + +  +    D+VT TS L A+ ++  +    ++ + + D    P+
Sbjct: 451 CREGQLKEALSLVEEMEERGFVVDLVTITSLLIAFHKQGRWDWTEKLMKHVRDGNLVPN 509



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 65/142 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +FE+M + G+  +  ++ +L+    K G  A    +   + K G   D    + +
Sbjct: 387 TEACQLFEKMVQDGVRASSWTYNILIDGLCKNGRSAAGYSLFCDLKKKGKFVDAITYSII 446

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + L  R GQ ++   ++  ME+  +  D+ T   L+  + + G  +  E L + +    L
Sbjct: 447 VLLLCREGQLKEALSLVEEMEERGFVVDLVTITSLLIAFHKQGRWDWTEKLMKHVRDGNL 506

Query: 176 KPDVVTWTSRLAAYSRKKLYRR 197
            P+V+ W + + A  +    RR
Sbjct: 507 VPNVLNWQADMEASLKNPRSRR 528



 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 9/182 (4%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG-------RLGQFEKMEEVL 132
           LL A  K     + + V +++   G + DT+  N  ++ +G        L  F++M+E  
Sbjct: 231 LLVALRKADMRVEFKKVFDKLKGMGFELDTWGYNICIHAFGCWSDLGTALRLFKEMKEKS 290

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
                GS   D+ TYN LI +    G ++    +++ L     +PD  T+   +   S+ 
Sbjct: 291 KGF--GSCCPDLCTYNSLIRLLCFSGKVKDALVVYEELKISGHEPDAFTYRIIIEGCSKS 348

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
                  +IF EM   G  PD      L+       ++ +   L   M +D   A    +
Sbjct: 349 YRMNDATKIFSEMQYNGFVPDTTVYNSLLDGMFKARKVTEACQLFEKMVQDGVRASSWTY 408

Query: 253 NL 254
           N+
Sbjct: 409 NI 410


>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 83/165 (50%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SD H ++E+MK+ G +P + S+ +L++++ + G V +   +  ++  S  KPD    NS+
Sbjct: 301 SDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSL 360

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  G+ G  ++       M +   + D+ TY+ LI  +G+   +E    LF  + A+  
Sbjct: 361 INCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGC 420

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            P++VT+   L    R       ++++ ++   G  PD  T  VL
Sbjct: 421 SPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 465



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 89/185 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH +F  M          ++M +L +    G   +   +++++H+  +  DT + N++
Sbjct: 231 SEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTV 290

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+  G+L +   + ++   M++   + DI +YNILI+ +GR G +E+   +F+ L     
Sbjct: 291 LSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSC 350

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPD++++ S +    +          F+EM + G  PD  T   LI      D++E    
Sbjct: 351 KPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACR 410

Query: 236 LVRTM 240
           L   M
Sbjct: 411 LFDEM 415



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 2/171 (1%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           KR+     M  +  +L+A  K    +    +  +M + G  PD F  N +++ +GR G+ 
Sbjct: 278 KRISTDTVM--YNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRV 335

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
           E+  ++   +E  S   DI ++N LIN  G+ G I++    F+ +  + L PDVVT+++ 
Sbjct: 336 EEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTL 395

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +  + +         +F+EM+  GC P+  T  +L+       +  +   L
Sbjct: 396 IECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDL 446



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 104/210 (49%), Gaps = 1/210 (0%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           T N+ + IF    +D    F+ +K+  +     ++  LL A+ ++ N  K   V  ++ +
Sbjct: 12  TINILIGIFG-GGADVERCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRR 70

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G K D F  N +L+   +  + +++  V   M++     D  TY I+I + G+ G  ++
Sbjct: 71  RGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADE 130

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              LFQ +  K   P+++ + + + A +  ++  + + +F +M++  C P+G T  V+++
Sbjct: 131 SLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILN 190

Query: 223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
              +E Q+ ++  +V   +K M  ++  Y 
Sbjct: 191 VLVAEGQLGRLDEVVEVSNKFMNKSIYAYL 220



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 32/225 (14%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM   G TP + ++  ++ A +    V K   + ++M ++  +P+ F  + +LN+  
Sbjct: 134 LFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLV 193

Query: 121 RLGQFEKMEEVLTA----MEKGSYAADIST----------YNILINIYG------RGGFI 160
             GQ  +++EV+      M K  YA  + T          + +  N++       R  ++
Sbjct: 194 AEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYM 253

Query: 161 EKMEGL------------FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
             +E L               +  KR+  D V + + L+A  + K      +++E+M   
Sbjct: 254 SMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQD 313

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           G  PD  +  +LIS+     ++E+   +   +         I FN
Sbjct: 314 GPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFN 358



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           ME+      IST NILI I+G G  +E+    F  +    L+ +  T+   L A+ R   
Sbjct: 1   MERCGVRGSISTINILIGIFGGGADVER---CFDLVKKWDLQMNCYTYKCLLQAHLRSNN 57

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             +  E++ E+   G   D     +L+ A + +++++QV  + + M +
Sbjct: 58  SNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKR 105


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 93/187 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A A+  EM  L I P + +  LL+  + K GNV + +GV+  M + G++P+    NS
Sbjct: 282 WKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNS 341

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y    +  +  ++   M       D+ +Y+ILIN Y     I++ + LF  +  + 
Sbjct: 342 LMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQG 401

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+ V++T+ + A+ +    R   E+F++M   G  PD  T  VL+     +  + +  
Sbjct: 402 LTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAF 461

Query: 235 TLVRTMH 241
            L R M 
Sbjct: 462 RLFRAMQ 468



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 90/187 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ M   G  P + S+ +L+  Y     + + + + N+M   GL P+T    +++
Sbjct: 354 EARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLI 413

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + +LG+  +  E+   M    Y  D+ TY++L+  + + G++ K   LF+++    LK
Sbjct: 414 HAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLK 473

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++V +T  + +  +        ++F E+   G  PD      +I+    E  +++    
Sbjct: 474 PNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEA 533

Query: 237 VRTMHKD 243
            R M +D
Sbjct: 534 FRKMEED 540



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EM   G+TP   S+  L+ A+ + G + +   +   MH +G  PD    + 
Sbjct: 387 IDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSV 446

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + + G   K   +  AM+      ++  Y ILI+   + G +     LF  L    
Sbjct: 447 LLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHG 506

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           L+PDV  +T+ +    ++ L    LE F +M + GC P+  +  V+I
Sbjct: 507 LQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVII 553



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 99/221 (44%), Gaps = 35/221 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF---- 110
           F+ A  +F++M   G  P + ++  ++    K G  A   G+I +M + G +PD      
Sbjct: 177 FAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYST 236

Query: 111 ---------VINSMLNLYGR-------------------LGQFEKMEE---VLTAMEKGS 139
                    ++N  L+++                     L  F + +E   +L  M   +
Sbjct: 237 LIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLN 296

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              DI T+++LI+I+ + G + + +G+ +++    ++P+V+T+ S +  YS +       
Sbjct: 297 IMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEAR 356

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++F+ MI  GC PD  +  +LI+      +I++   L   M
Sbjct: 357 KLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEM 397



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 92/209 (44%), Gaps = 13/209 (6%)

Query: 33  MLIN-FLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA 91
           +LIN F L+QH    F            +V  ++ +LG+ PT+ +   L+    K G  A
Sbjct: 131 ILINCFCLMQHVDLGF------------SVLAKVIKLGLQPTIITFTTLINGLCKAGEFA 178

Query: 92  KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +   + + M   G +PD +   +++N   ++G+      ++  M +     D+ TY+ LI
Sbjct: 179 QALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLI 238

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           +   +   + +   +F  + AK + P VV++TS +        ++    +  EM      
Sbjct: 239 DSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIM 298

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           PD  T  +LI     E  + +   +++TM
Sbjct: 299 PDIVTFSLLIDIFCKEGNVLEAQGVLKTM 327



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 85/187 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y+    ++ ++M+  G++P   +  +L+  +    +V     V+ ++ K GL+P      
Sbjct: 106 YYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFT 165

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N   + G+F +  E+   M       D+ TY  +IN   + G      GL + +   
Sbjct: 166 TLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEV 225

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PDVVT+++ + +  + +L    L+IF  M   G  P   +   LI    S  + ++ 
Sbjct: 226 GCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEA 285

Query: 234 TTLVRTM 240
           + ++  M
Sbjct: 286 SAMLNEM 292



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/160 (19%), Positives = 70/160 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F++M   G  P + ++ +LL  + K G + K   +   M  + LKP+  +   ++
Sbjct: 424 EARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILI 483

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G      ++ + +       D+  Y  +IN   + G +++    F+ +      
Sbjct: 484 DSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCP 543

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           P+  ++   +  + + K   R +++  EM D G   D GT
Sbjct: 544 PNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGT 583



 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/98 (21%), Positives = 48/98 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  +F  M+   + P +  + +L+ +  K+GN+     + +++   GL+PD  +  
Sbjct: 456 YLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYT 515

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +++N   + G  ++  E    ME+     +  +YN++I
Sbjct: 516 TIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVII 553


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 88/191 (46%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S +  +A  V+  M   GI P++K++  L+ A  K  ++    G++ +M   GL+P+ + 
Sbjct: 205 SGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYT 264

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
               + + GR G+ ++   +L  M+      D+ TY +LI+     G +   + LF  + 
Sbjct: 265 FTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMK 324

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           A   KPD VT+ + L  +S         E + EM   G  PD  T  +LI A     +++
Sbjct: 325 ASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVD 384

Query: 232 QVTTLVRTMHK 242
           +    +  M K
Sbjct: 385 EAFGTLDVMKK 395



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 86/199 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F  M+ LG+  T  +++L +  Y K+G   K      +M  +G+ P+    N+
Sbjct: 418 LDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNA 477

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L      G+ E+ +E    ++K   A D  TYNIL+  YG+ G ++    L   +    
Sbjct: 478 SLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENG 537

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+VV   S +    +        ++F+ M +    P   T   L++    E ++++ T
Sbjct: 538 CDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEAT 597

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L + M  D      I FN
Sbjct: 598 ALFKGMIADDCPPNTISFN 616



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 76/159 (47%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +F  M + GI P +KS+ +++      G V        ++  SGL PD    N M+N
Sbjct: 947  ACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMIN 1006

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              GR  + E+   +   M       D+ TYN LI   G  G +E+   +++ L  K L+P
Sbjct: 1007 GLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEP 1066

Query: 178  DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            +V T+ + +  +S      R   ++++M+  GC P+ GT
Sbjct: 1067 NVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGT 1105



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 7/207 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+     S+Y         +A   F  +K+ G+ P   ++ +L+  Y K G V     
Sbjct: 469 VPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIK 528

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++++M ++G  P+  +INS+++   +  + ++  ++   M++   A  + TYN L+   G
Sbjct: 529 LLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLG 588

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +++   LF+ + A    P+ +++ + L    +       L++   M +  C+PD  
Sbjct: 589 KEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVL 648

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T   +I     E+++     L   M K
Sbjct: 649 TYNTVIYGLIKENRVNYAFWLFHQMKK 675



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 83/174 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   FE+MK  GI P + +    L + ++ G + + +   N + K GL PD    N ++ 
Sbjct: 456 AIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMR 515

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG+ G+ +   ++L+ ME+     ++   N LI+   +   +++   +FQ +   +L P
Sbjct: 516 CYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAP 575

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            VVT+ + LA   ++   +    +F+ MI   C P+  +   L+       +++
Sbjct: 576 TVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVD 629



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 5/217 (2%)

Query: 32  FMLINFLLLQHTPNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           F L+   +++ + N ++ IF + +      +A    E+M+++G      S++ L+    K
Sbjct: 145 FNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLK 204

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
           +G   +   V  +M   G+KP     ++++   G+    E +  +L  ME      +I T
Sbjct: 205 SGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYT 264

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + I I I GR G I++  G+ + +      PDVVT+T  + A           E+F +M 
Sbjct: 265 FTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMK 324

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +   PD  T   L+   S    ++ +      M  D
Sbjct: 325 ASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEAD 361



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 9/211 (4%)

Query: 41  QHTPNLFVFI-----FSIYFSDAHAVFE---EMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
            H P+   +I     FS +  D  A+ E   EM+  G  P + +  +L+ A  K G V +
Sbjct: 327 SHKPDRVTYITLLDKFSDH-GDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDE 385

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
             G ++ M K G+ P+    N+++    RL + ++  E+  +ME         TY + I+
Sbjct: 386 AFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFID 445

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            YG+ G   K    F+ +    + P++V   + L + + +       E F  +   G  P
Sbjct: 446 YYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAP 505

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           D  T  +L+       +++    L+  M ++
Sbjct: 506 DAITYNILMRCYGKAGRVDDAIKLLSEMEEN 536



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 79/182 (43%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            + +EM+ LG+ P + +  + +    + G + +  G++ +M  +G  PD      +++  
Sbjct: 248 GLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDAL 307

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              G+    +E+   M+  S+  D  TY  L++ +   G ++ ++  +  + A    PDV
Sbjct: 308 CNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDV 367

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+T  + A  +           + M   G  P+  T   LI      +++++   L  +
Sbjct: 368 VTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNS 427

Query: 240 MH 241
           M 
Sbjct: 428 ME 429



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 80/186 (43%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              +A   FEEM   G  P    + +L+  + K G+V     +  +M K G++PD    + 
Sbjct: 909  LEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSI 968

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            M++    +G+ +        ++      D+  YN++IN  GR   +E+   LF  +  + 
Sbjct: 969  MVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRG 1028

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            + PD+ T+ + +       +     +++EE+   G  P+  T   LI   S     ++  
Sbjct: 1029 ITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAY 1088

Query: 235  TLVRTM 240
             + + M
Sbjct: 1089 AVYKKM 1094



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 1/188 (0%)

Query: 57  DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           DA+ VF ++ K   ITP+++++  L+    K        G+  +M  +G  PD F  N  
Sbjct: 770 DAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLF 829

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+  G+ G+ +++ ++   M       +  T+NI+I    +   ++K   L+  L +   
Sbjct: 830 LDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDF 889

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P   T+   +    +        + FEEM+D GC P+     +L++    +  +E    
Sbjct: 890 SPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACE 949

Query: 236 LVRTMHKD 243
           L R M K+
Sbjct: 950 LFRRMVKE 957



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 79/182 (43%)

Query: 40   LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
            + H   +F  + S     A  ++ ++     +PT  ++  L+    K G + + +    +
Sbjct: 859  ITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEE 918

Query: 100  MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
            M   G  P+  + N ++N +G+ G  E   E+   M K     D+ +Y+I+++     G 
Sbjct: 919  MLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGK 978

Query: 160  IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            ++     F+ L    L PD+V +   +    R +     L +F+EM + G  PD  T   
Sbjct: 979  VDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNA 1038

Query: 220  LI 221
            LI
Sbjct: 1039 LI 1040



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 35/219 (15%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV------ 111
            A  +F +MK  G TP + ++ L L A  K+G + +   +  +M   G KP+T        
Sbjct: 807  AWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIF 866

Query: 112  -------INSMLNLYG----------------------RLGQFEKMEEVLTAMEKGSYAA 142
                   ++  ++LY                       +LG+ E+ ++    M       
Sbjct: 867  GLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMP 926

Query: 143  DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
            +   YNIL+N +G+ G +E    LF+ +  + ++PD+ +++  +            L  F
Sbjct: 927  NCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYF 986

Query: 203  EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            EE+  +G  PD     ++I+      ++E+  +L   M 
Sbjct: 987  EELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMR 1025



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            D   VF  M++  I  ++ +++ +       G + +    + +M K G   + +    +
Sbjct: 139 EDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGL 198

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++L  + G   +  +V   M        + TY+ L+   G+   IE + GL Q + +  L
Sbjct: 199 IHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGL 258

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P++ T+T  +    R         I + M DAGC PD  T  VLI A  +  ++     
Sbjct: 259 RPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKE 318

Query: 236 LVRTM 240
           L   M
Sbjct: 319 LFLKM 323



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 91/209 (43%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +F +MK     P   +++ LL  +S  G++   +   ++M   G  PD      
Sbjct: 313 LNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTI 372

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   ++G+ ++    L  M+K   A ++ TYN LI    R   +++   LF S+ +  
Sbjct: 373 LIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLG 432

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+    T+   +  Y +     + ++ FE+M   G  P+       + + + + ++E+  
Sbjct: 433 LETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAK 492

Query: 235 TLVRTMHKDMKTALPIYFNL----YGEKG 259
                + K       I +N+    YG+ G
Sbjct: 493 EFFNGLKKCGLAPDAITYNILMRCYGKAG 521



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 46/97 (47%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
             +A ++F+EM+  GITP + ++  L+      G V +   +  ++   GL+P+ F  N++
Sbjct: 1015 EEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNAL 1074

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            +  +   G  ++   V   M  G    +  T+  L N
Sbjct: 1075 IRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQLPN 1111


>gi|302820182|ref|XP_002991759.1| hypothetical protein SELMODRAFT_134189 [Selaginella moellendorffii]
 gi|300140440|gb|EFJ07163.1| hypothetical protein SELMODRAFT_134189 [Selaginella moellendorffii]
          Length = 565

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 103/192 (53%), Gaps = 12/192 (6%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVIN 113
             +A  +FE++       T+ S   +LTAY++  +  +   ++  M   G+ KPD   + 
Sbjct: 225 LDEARDMFEQLPE----RTLVSWNAMLTAYAQNKHGRQALSLLAAMDSEGVTKPDRVTLI 280

Query: 114 SMLNLYGRLGQFEKMEEVLTAM-EKGSYA--ADISTYNILINIYGRGGFIEKMEGLFQSL 170
           + LN    +G   + +E+  A+ E+ SY   AD+S    L+N+YGR G +E+   LF+++
Sbjct: 281 TALNACADVGALAQGKELHQAVDEEMSYKHRADVSVATALLNMYGRCGSVEQARRLFEAM 340

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           P    + D+V+WT+ ++AY+R +  +  LE+F  M   G  P+  +   ++SACS+   +
Sbjct: 341 P----RHDIVSWTAIVSAYARCRQAKVSLELFRAMELEGMLPNEISFVSIVSACSAASLV 396

Query: 231 EQVTTLVRTMHK 242
           E   T  R +++
Sbjct: 397 EDGRTFFRLIYR 408



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 13/162 (8%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           PDT V  +++ +YGR  +  + E V   +   S    I ++N++++ + R G +E    L
Sbjct: 6   PDTVVATALVRMYGRCHRVAEAESVFRDIANKS----IVSWNVMLSAFARNGCVEDASAL 61

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKK---LYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           F ++P      + V+W + L+AY+  +         ++FEEM       D  +   L+S 
Sbjct: 62  FHAIPDG--DKNTVSWNALLSAYNYAQGGSNVANAWKVFEEMP----LRDVVSWTTLVSV 115

Query: 224 CSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
           C+    +E+   L   M +  + +     +   + G  R  L
Sbjct: 116 CARNGSVEEAVALFDKMPQRSRVSWNSIVSGLSQNGRGRKAL 157



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 93/207 (44%), Gaps = 14/207 (6%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A +VF ++    I     S  ++L+A+++ G V     + + +       +T   N++
Sbjct: 25  AEAESVFRDIANKSIV----SWNVMLSAFARNGCVEDASALFHAIPDG--DKNTVSWNAL 78

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ Y        +       E+     D+ ++  L+++  R G +E+   LF  +P +  
Sbjct: 79  LSAYNYAQGGSNVANAWKVFEEMPLR-DVVSWTTLVSVCARNGSVEEAVALFDKMPQR-- 135

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
               V+W S ++  S+    R+ L++F+ M+  G   D      ++ AC+  + +EQ + 
Sbjct: 136 --SRVSWNSIVSGLSQNGRGRKALQVFKVMVLEGVEADSVCFASVLGACADMEDLEQGSL 193

Query: 236 LVR--TMHKDMKTALPI-YFNLYGEKG 259
           + +  T   D  T +     N+YG+ G
Sbjct: 194 VHQEITSTSDGNTLIATAVVNMYGKCG 220


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  F     +S A + FE +K   I P   +H +++    K     K   + N
Sbjct: 255 LVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFN 314

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   KS   PD     SM++LY   G  E  E     M       +I +YN L+  Y  
Sbjct: 315 SMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAA 374

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +   +F  +     +PDVV++TS L AY R +  ++  EIF+ +      P+  +
Sbjct: 375 RGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVS 434

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   +E    ++R M +D
Sbjct: 435 YNALIDAYGSNGLLEDAIEILREMEQD 461



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 2/185 (1%)

Query: 55  FSDAHAVFEEMK--RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +  A  +F  MK  +    P + +   ++  YS  G++  CE   N M   GLKP+    
Sbjct: 306 YDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSY 365

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++L  Y   G   +  +V   +++  +  D+ +Y  L+N YGR    +K   +F+ +  
Sbjct: 366 NALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKR 425

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             LKP++V++ + + AY    L    +EI  EM     +P+  +   L++AC    Q  +
Sbjct: 426 NNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVK 485

Query: 233 VTTLV 237
           + T++
Sbjct: 486 IDTVL 490



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 38/261 (14%)

Query: 47  FVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
            + ++S+  +  +  A F  M   G+ P + S+  LL AY+  G   +   V N++ ++G
Sbjct: 333 MIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNG 392

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            +PD     S+LN YGR  + +K  E+   +++ +   +I +YN LI+ YG  G +E   
Sbjct: 393 FRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAI 452

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSR--KKL---------------------------- 194
            + + +   ++ P+VV+  + LAA  R  +K+                            
Sbjct: 453 EILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSY 512

Query: 195 -----YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI-EQVTTLVRTMHKDMKTAL 248
                Y + ++++  M       D  T  VLIS C    +  E ++ +   MH  +  + 
Sbjct: 513 INVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSK 572

Query: 249 PIYFNLYGEKGVARSNLGQYI 269
            +Y ++        S LGQ I
Sbjct: 573 EVYSSIICAYSKQASALGQII 593



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++     +  G+  +M K   KPD    N+++N +GR GQ+     ++  M + 
Sbjct: 155 MMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRA 214

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     STYN LIN  G  G  ++   + + +    + PD+VT    L A+     Y + 
Sbjct: 215 AIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKA 274

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           L  FE +      PD  T  ++I       Q ++   +  +M +      P
Sbjct: 275 LSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHP 325



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 2/158 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM++    P  +++  L+ A+ + G       +++ M ++ + P     N+++N
Sbjct: 169 ARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLIN 228

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G  G +++   V   M       D+ T+NI++  +  G    K    F+ +    ++P
Sbjct: 229 ACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRP 288

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPD 213
           D  T    +    + K Y + ++IF  M +  + C+PD
Sbjct: 289 DTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPD 326



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 123 GQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           G  E    V + M+ + +Y A    YN++I ++ R    ++  GLF  +   R KPD  T
Sbjct: 128 GSIEHCNLVFSWMKNQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAET 187

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + + + A+ R   +R  + I ++M+ A   P   T   LI+AC S    ++   + + M
Sbjct: 188 YNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKM 246



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT----GNVAKCEGVINQMHKSGLKPDTF 110
           F +A +  EEM  L +  + + +  ++ AYSK     G + + E   N M   G  PD  
Sbjct: 553 FGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKSLGCSPDVV 612

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
              +ML+ Y    ++EK+  +   ME+     D      L+  + +GG   ++  L QS+
Sbjct: 613 TYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRAFNKGGQPGRVLSLAQSM 672

Query: 171 PAKRL 175
             K +
Sbjct: 673 REKDI 677


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AVF EM + G+ P + +   L+ A  K GN+ +   ++ QM + GL+ +     ++++ +
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G  +     +  M K      +  YN LIN Y + G ++    L + + AKR+KPDV
Sbjct: 339 CKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 398

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+++ ++ Y +        ++ ++M+  G  PD  T   LI     E ++     L   
Sbjct: 399 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFEN 458

Query: 240 M 240
           M
Sbjct: 459 M 459



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 13/216 (6%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            P++  F   I+          A A+  +M+  G+     +   L+  + K G +     
Sbjct: 290 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 349

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            + +M K G++P     N+++N Y +LG+ +   E++  ME      D+ TY+ +I+ Y 
Sbjct: 350 AVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G ++    L Q +  K + PD +T++S +     +K      E+FE M+  G  PD  
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 469

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDM--KTALP 249
           T   LI     E  +E+  +L    H +M  K  LP
Sbjct: 470 TYTTLIDGHCKEGNVEKALSL----HDEMIRKGVLP 501



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 1/191 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA    EEM++ GI P++  +  L+  Y K G +     +I +M    +KPD    +
Sbjct: 343 FLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYS 402

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ Y ++G  +   ++   M K     D  TY+ LI        +     LF+++   
Sbjct: 403 TIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL 462

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++PD  T+T+ +  + ++    + L + +EMI  G  PD  T  VLI+  S   + ++ 
Sbjct: 463 GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEA 522

Query: 234 TTLV-RTMHKD 243
             L+ +  H+D
Sbjct: 523 HRLLFKLYHED 533



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 10/214 (4%)

Query: 39  LLQH--TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           +L+H   PN++ +   +          +A  V  +M+  G  P   ++  L+ A+ + G 
Sbjct: 143 MLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202

Query: 90  VAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
           +   E V++ M + G  KP+    NSM+N   + G+ E   +V   M +   A D+ +YN
Sbjct: 203 LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 262

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            L++ Y + G + +   +F  +  + L PDVVT+TS + A  +     + + +  +M + 
Sbjct: 263 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 322

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           G   +  T   LI     +  ++     V  M K
Sbjct: 323 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 74/170 (43%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + +   ++    K G +     V ++M + GL PD    N++L+ Y ++G   +   V
Sbjct: 221 PNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 280

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            + M +     D+ T+  LI+   + G +E+   L   +  + L+ + VT+T+ +  + +
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 340

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           K      L   EEM   G  P       LI+      +++    L+R M 
Sbjct: 341 KGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 390



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 37/210 (17%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P++ ++  +L A S   ++      ++ M + G+ P+ +  N ++      G+ E+ 
Sbjct: 113 GYAPSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIE--------------------------- 161
             V+  M     A +  TYN L+  + R G ++                           
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 162 ------KMEG---LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
                 +MEG   +F  +  + L PDVV++ + L+ Y +       L +F EM   G  P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           D  T   LI A      +EQ   LV  M +
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRE 321



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/211 (18%), Positives = 90/211 (42%), Gaps = 19/211 (9%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  +FE M +LG+ P   ++  L+  + K GNV K   + ++M + G+ PD    + 
Sbjct: 449 LNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSV 508

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG---------------GF 159
           ++N   +  + ++   +L  +       D   Y+ L+    +                G 
Sbjct: 509 LINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGL 568

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++ + ++QS+  +  K D   ++  +  + R    R+ L   ++M+ +G  P+  +   
Sbjct: 569 MKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTIS 628

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
           L+     E  + +    +    +D+ T  P+
Sbjct: 629 LVRGLFEEGMVVEADNAI----QDLLTCCPL 655



 Score = 40.0 bits (92), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 33/182 (18%), Positives = 73/182 (40%), Gaps = 15/182 (8%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A  + ++M + G+ P   ++  L+    +   +     +   M + G++PD F   +
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 473

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G  EK   +   M +     D+ TY++LIN   +    ++   L   L  + 
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533

Query: 175 LKPDVVTW---------------TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             PD + +                + L  +  K L +   ++++ M+D     DG    +
Sbjct: 534 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 593

Query: 220 LI 221
           LI
Sbjct: 594 LI 595


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 4/194 (2%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +A+  FE     G TP +  +  L+ ++ K G V +   +  +M +    P+    N++L
Sbjct: 826  EAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLL 885

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +   + G+    E++L  MEK     D+ TYNILI+  G+ G +++ E  F+ +  K + 
Sbjct: 886  SGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIV 945

Query: 177  PDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV+T+TS + +  +  KL   C E+F+ M + G  P   T  VLI       ++ +   
Sbjct: 946  PDVITFTSLIESLGKVDKLLEAC-ELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAM 1004

Query: 236  LVRTMHKDMKTALP 249
            +   M   +K  +P
Sbjct: 1005 IFHEMK--VKGCMP 1016



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 10/221 (4%)

Query: 32  FMLINFLLLQHT---PNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLL 81
           F L  F  LQ +   P+ FV+       + S    +A  + + MK   I P + ++  LL
Sbjct: 686 FALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLL 745

Query: 82  TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141
               K+G + +   +  +M + G +PD     S++++ G+ G+      +  AM K    
Sbjct: 746 DGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCV 805

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            D+ TY+ LI+  G+ G +E+    F++  +K   P+V  ++S + ++ +K +  R LE+
Sbjct: 806 PDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALEL 865

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           FEEM    C P+  T   L+S  +   ++     L+  M K
Sbjct: 866 FEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEK 906



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 4/212 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  MK  G+ P + ++  LL++  K   +     + N++ +S L PDTFV N M+N
Sbjct: 652 ALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVN 711

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + ++  +++ +M+  +   D+ TY  L++  G+ G +E+   +F  +  +  +P
Sbjct: 712 GLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEP 771

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV +TS +    +       L IF  M    C PD  T   LI +   E ++E+     
Sbjct: 772 DVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFF 831

Query: 238 R-TMHKDMKTALPIYFNL---YGEKGVARSNL 265
             ++ K     + +Y +L   +G+KG+    L
Sbjct: 832 ENSISKGCTPNVGVYSSLIDSFGKKGMVDRAL 863



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 7/194 (3%)

Query: 43   TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            TPN+ V+   I           A  +FEEM+R    P + ++  LL+  +K G +   E 
Sbjct: 840  TPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEK 899

Query: 96   VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            ++ +M K G  PD    N +++  G++G  ++ E     M++     D+ T+  LI   G
Sbjct: 900  LLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLG 959

Query: 156  RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
            +   + +   LF S+  +   P VVT+   +    R         IF EM   GC PDG 
Sbjct: 960  KVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGI 1019

Query: 216  TAKVLISACSSEDQ 229
            T  ++    S  +Q
Sbjct: 1020 TIGIMKRILSVREQ 1033



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 2/201 (0%)

Query: 42  HTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
            T  +FV  F  S     A    +EM + GI P + +  +L+ A  K+GN+ +     N 
Sbjct: 288 QTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNG 347

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M      P+     +++N   + G+ E+  EV   M++ + + D   YN LI+  G+ G 
Sbjct: 348 MKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGE 407

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            +   GLF+ +  + L P++ T+   ++   +        ++F ++ + G  PD  T   
Sbjct: 408 ADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNT 467

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI       Q+++V  +++ M
Sbjct: 468 LIDVLGKGGQMDKVLAIIKEM 488



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 99/204 (48%), Gaps = 2/204 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           FI + +  +A  + E MK+    PT+ ++  L+    K G + +   ++ +M K G +P 
Sbjct: 538 FIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPS 597

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               +S++  + +  Q E+   +   M +    AD+STY+++IN   +   +++   +F 
Sbjct: 598 VVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFG 657

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +  + ++P +  + + L++  + +     L+IF E+ ++   PD     ++++     +
Sbjct: 658 RMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSN 717

Query: 229 QIEQVTTLVRTMHKDMKTALPIYF 252
           ++++   LV +M    +  LP  F
Sbjct: 718 RVDEACKLVDSMKN--QNILPDLF 739



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F  MK L  +P + ++  L+   +K G + +   V  +M ++   PD    N+
Sbjct: 338 IDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNT 397

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G+ G+ +    +   M+      ++ TYNI+I++ G+ G   +   LF  L  + 
Sbjct: 398 LIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQG 457

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
             PDV T+ + +    +     + L I +EM++ G
Sbjct: 458 AVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 100/230 (43%), Gaps = 32/230 (13%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG----LKPDT--- 109
           +A  +F ++K  G  P + ++  L+    K G + K   +I +M + G    +  D+   
Sbjct: 445 EAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAG 504

Query: 110 ------------------------FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
                                      N++++ +   G  ++  ++L  M+K      + 
Sbjct: 505 HEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVV 564

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TY  L++  G+ G +++   L + +  +  +P VVT++S +A++ ++      L +F+EM
Sbjct: 565 TYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEM 624

Query: 206 IDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           +  GC  D  T  ++I+  C S+D  + +    R   + M+  L  Y  L
Sbjct: 625 VRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTL 674



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 76/185 (41%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +F +MK  G  P+   +  +L    K G       V  ++ +  ++PD       
Sbjct: 234 SGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIF 293

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + R G+ +   E +  M K      + T+ +LI+   + G I++    F  +   R 
Sbjct: 294 VHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRC 353

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+T+ +   ++        E+F EM +  C PD      LI       + +    
Sbjct: 354 SPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACG 413

Query: 236 LVRTM 240
           L + M
Sbjct: 414 LFKEM 418



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 85/200 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  +F  M +    P + ++  L+ +  K G V +           G  P+  V +S
Sbjct: 789 LSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSS 848

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ G  ++  E+   M++     +I TYN L++   + G +   E L + +    
Sbjct: 849 LIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVG 908

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD+VT+   +    +  +       F+ M + G  PD  T   LI +    D++ +  
Sbjct: 909 CVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEAC 968

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            L  +M ++      + +N+
Sbjct: 969 ELFDSMEEEGYNPSVVTYNV 988



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 35/223 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD----TF 110
             +A ++  EM++ G  P++ ++  L+ ++ K     +   + ++M + G   D    + 
Sbjct: 579 LDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSL 638

Query: 111 VINSM---------LNLYGR---------LGQF----------EKME---EVLTAMEKGS 139
           VIN +         L+++GR         LG +          EK++   ++   +++ S
Sbjct: 639 VINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESS 698

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D   YNI++N   +   +++   L  S+  + + PD+ T+TS L    +        
Sbjct: 699 LVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAF 758

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +F +M + G  PD      L+       ++     + R M K
Sbjct: 759 NMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAK 801



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 69/172 (40%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G + T+ ++ L++   +          ++  M K G +    ++ S+L  +G        
Sbjct: 177 GYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGA 236

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            E+   M+        + YN ++ +  +GGF      +F  L   R++PD  T+   + +
Sbjct: 237 LEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHS 296

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++R        E  +EMI +G  P   T  VLI A      I++       M
Sbjct: 297 FNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGM 348



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 70/152 (46%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L++A+   G+V +   ++  M K    P      ++++  G+ G+ ++   +L  MEK  
Sbjct: 534 LMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQG 593

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
               + TY+ L+  + +    E+   LF  +  K    DV T++  +    +     + L
Sbjct: 594 CEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQAL 653

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           ++F  M + G  P  G  K L+S+   +++I+
Sbjct: 654 DVFGRMKEEGMEPLLGNYKTLLSSLVKDEKID 685


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 10/208 (4%)

Query: 35  INFLLLQHTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           I F+   H  N  +  +      SDA+ VFEE     I         ++TA S+  +   
Sbjct: 433 IGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTS----MITALSQCDHGEG 488

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              +  +M + GL+PD FV++S+LN    L  +E+ ++V   + K  + +D    N L+ 
Sbjct: 489 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVY 548

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            Y + G IE  E  F SLP +     VV+W++ +   ++    +R LE+F  M+D G  P
Sbjct: 549 TYAKCGSIEDAELAFSSLPER----GVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 604

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +  T   ++ AC+    +++      +M
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKRYFNSM 632



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 7/172 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  VF E           S   L++AY K         V  +M  SG++P  F  +
Sbjct: 150 FMDDARRVFNEADS---ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFS 206

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N        E   +V   + +  Y  D+ T N L+++Y + G ++    +F+ +P  
Sbjct: 207 CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-- 264

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
               DVV+W + ++         R +E+  +M  +G  P+  T   ++ ACS
Sbjct: 265 --DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACS 314



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 17/184 (9%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY--GRLG-QFEKM 128
           P   S   L+TAYS  G         + M   G+  + F +  +L      RLG Q   M
Sbjct: 66  PCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAM 125

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
                AM  G + +D+   N L+ +YG  GF++    +F    ++R   + V+W   ++A
Sbjct: 126 -----AMATG-FGSDVFVANALVAMYGGFGFMDDARRVFNEADSER---NAVSWNGLMSA 176

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE---QVTTLVRTM--HKD 243
           Y +       +++F EM+ +G  P       +++AC+    IE   QV  +V  M   KD
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 244 MKTA 247
           + TA
Sbjct: 237 VFTA 240



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 4/157 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF EM   GI PT      ++ A + + N+     V   + + G   D F  N+++
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALV 244

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++Y ++G+ +    +   M      +D+ ++N LI+     G   +   L   +    L 
Sbjct: 245 DMYMKMGRVDIASVIFEKMPD----SDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           P+V T +S L A S    +    +I   MI A    D
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD 337


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 1/199 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + EEM   G+ P    +  L+  +SK GN++     + +M K+ + PD F  NS++
Sbjct: 471 EAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLI 530

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                +G+ E+ EE    ++K     D  TY+ LI+ Y + G +EK + L + +    LK
Sbjct: 531 KGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLK 590

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+T  L  Y +   Y +   I + M+ +G  PD     ++I   S  + +E    +
Sbjct: 591 PNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMV 650

Query: 237 VRTMHKD-MKTALPIYFNL 254
           +  + K+ +   L IY +L
Sbjct: 651 LTEVEKNGLVPDLHIYSSL 669



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 88/186 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +    ++ + M   G  P    + +++   S++ N+     V+ ++ K+GL PD  + +S
Sbjct: 609 YEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSS 668

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   ++   EK   +L  M K      I  YN LI+ + R G I +   +F S+ AK 
Sbjct: 669 LISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKG 728

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+ VT+T+ +    +        ++++EM+D G  PD     VL + CS    +EQ  
Sbjct: 729 LVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQAL 788

Query: 235 TLVRTM 240
            L   M
Sbjct: 789 FLTEEM 794



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 3/187 (1%)

Query: 57  DAHAVFE---EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           D    FE   EM+  GI P + S+ +++    + G   +   ++ +M   GLKP+ F+  
Sbjct: 433 DKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYA 492

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  + + G      E L  M K +   D+  YN LI      G +E+ E  +  +  +
Sbjct: 493 PLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKR 552

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD  T++  +  Y +     +  ++  +M+++G  P+  T   L+      +  E+V
Sbjct: 553 GLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKV 612

Query: 234 TTLVRTM 240
           ++++++M
Sbjct: 613 SSILQSM 619



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 10/183 (5%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  + +EM   G+ P    +  L+    K G + +   ++ +M K GL+PDTF  N +
Sbjct: 365 AEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPL 424

Query: 116 LNLYGRLGQFEKME-----EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           +      G F++ +     E+L  M       ++ +Y I+IN   + G  ++   L + +
Sbjct: 425 MQ-----GHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEM 479

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            ++ LKP+   +   +  +S++       E  E+M  A  +PD      LI   S+  ++
Sbjct: 480 ISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRM 539

Query: 231 EQV 233
           E+ 
Sbjct: 540 EEA 542



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 7/207 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F++   I         S A    E+M +  + P +  +  L+   S  G + + E  
Sbjct: 486 PNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEY 545

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             Q+ K GL PD F  + +++ Y + G  EK +++L  M       +  TY  L+  Y +
Sbjct: 546 YAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFK 605

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               EK+  + QS+     KPD   +   +   SR +       +  E+   G  PD   
Sbjct: 606 SNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHI 665

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LIS       +E+   L+  M K+
Sbjct: 666 YSSLISGLCKIADMEKAVGLLDEMAKE 692



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 73/159 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  VFEEM+R        ++ ++++   ++G V +  G   +M   GL PD F   +
Sbjct: 259 FDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGA 318

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   +  + ++ + +L  M       +I  Y  L++ + + G   +   + + + +  
Sbjct: 319 LMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAG 378

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           ++P+ + + + +    +     R  ++ +EMI  G  PD
Sbjct: 379 VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPD 417



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 76/178 (42%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  GI P + ++   + A+ K  +    + V  +M +     +    N M++   R G 
Sbjct: 234 MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 293

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E+       M     + D  TY  L+N   +G  +++ + L   +    LKP++V + +
Sbjct: 294 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGT 353

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  + ++       +I +EMI AG  P+      LI       Q+ + + L++ M K
Sbjct: 354 LVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIK 411



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/184 (19%), Positives = 84/184 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    EEM   G++P   ++  L+    K   + + + ++++M  SGLKP+  V  +++
Sbjct: 296 EAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLV 355

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G+  +  ++L  M       +   Y+ LI    + G + +   L + +    L+
Sbjct: 356 DGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLR 415

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+   +  + ++       E+  EM ++G  P+  +  ++I+      + ++   L
Sbjct: 416 PDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNL 475

Query: 237 VRTM 240
           +  M
Sbjct: 476 LEEM 479



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 69/170 (40%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           +P+     +L+  Y KTG+V     V+  M   GL P     N +L    R    E + +
Sbjct: 170 SPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWK 229

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +   ME      D+ TY+  I  + +    +  + +F+ +  +    + VT+   ++   
Sbjct: 230 LKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLC 289

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           R           EEM+D G  PD  T   L++      ++++   L+  M
Sbjct: 290 RSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEM 339


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 1/186 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A+ VF+ M R    P ++S+  L+ A+    N+ +   V N+M ++GLKPD  V N+M+
Sbjct: 308 EANQVFDRM-RDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMI 366

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  +  +  ++   M+    A ++ TY +LI  + + G ++     F+ +     +
Sbjct: 367 EGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQ 426

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV T+T  L  Y   K   R   + EEM   GC PDG T   LI   ++ +  +    +
Sbjct: 427 PDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARI 486

Query: 237 VRTMHK 242
            + M K
Sbjct: 487 YKKMIK 492



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 2/192 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FE MK  G  P + ++ +L+  + K G +        +M   G +PD      +L
Sbjct: 377 EAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 436

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG   + +++  +L  M +     D  TYN LI +       +    +++ +  K L+
Sbjct: 437 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLE 496

Query: 177 PDVVTWTSRLAAY-SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           P + T+   + +Y    + Y     ++EEM   G  PD  +  V I+      + E+   
Sbjct: 497 PTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACK 556

Query: 236 LVRTM-HKDMKT 246
            +  M  K MKT
Sbjct: 557 YIEEMIQKGMKT 568


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 4/199 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF++M R G+ P +K+   +L        ++K + V   M + G+KP     N+ML+ Y 
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 121 RLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           + G+ ++  E+L+ M E+G Y  D+ TYN+L+N   + G +E+ +GL + +    L    
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDV-TYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSA 285

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+   +  + +K L+    ++ EEM++   +P   T   L+       Q+  V      
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSD 345

Query: 240 MHKDMKTALPIYFN--LYG 256
           M K   T   + FN  LYG
Sbjct: 346 MLKSKFTPDIVSFNSLLYG 364



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 8/182 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  + +EM   G+ P + ++ +L+    K G V+   G  N+M   GLKPD F  N
Sbjct: 405 YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYN 464

Query: 114 SMLNLYGRLGQ----FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
           + +    ++      F   EE+L A     +  D+ TYN+ ++   + G  E+   L ++
Sbjct: 465 TRIVGEMKIADTSVAFSMQEEMLAA----GFPPDVITYNVFVHALCQQGNFEEACDLLEN 520

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           + +  L PD VT+TS +  + +    R+  E+F EM+  G  P   T  VLI A +++  
Sbjct: 521 MVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQM 580

Query: 230 IE 231
           ++
Sbjct: 581 LD 582



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 78/182 (42%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M +   TP + S   LL  Y +TG +++   + +++    L P     N++++    
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM 402

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  +    +   M       DI TY IL+N   + G++    G F  + +K LKPD   
Sbjct: 403 WGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFA 462

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + +R+    +         + EEM+ AG  PD  T  V + A   +   E+   L+  M 
Sbjct: 463 YNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMV 522

Query: 242 KD 243
            D
Sbjct: 523 SD 524



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 80/185 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A ++ EEM   G  P + ++ + + A  + GN  +   ++  M   GL PD     S+
Sbjct: 477 SVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSI 536

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + + G   K  EV   M     A  + TY +LI+ +     ++     F  +  K +
Sbjct: 537 INGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSV 596

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             +V+T+ + +      +      + F+EM + G  P+  +  +LI+   +    E+   
Sbjct: 597 PANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALR 656

Query: 236 LVRTM 240
           L R M
Sbjct: 657 LYREM 661



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 22/224 (9%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P++F +   +       Y S A   F EM   G+ P   ++   +    K  + +    +
Sbjct: 423 PDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSM 482

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M  +G  PD    N  ++   + G FE+  ++L  M       D  TY  +IN + +
Sbjct: 483 QEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVK 542

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G + K   +F  + +K + P VVT+T  + A++ K++       F +M++     +  T
Sbjct: 543 NGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVIT 602

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGV 260
              +I+             + R M +  K     YF+   EKG+
Sbjct: 603 YNAIING----------LCMTRRMDEAYK-----YFDEMEEKGI 631



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  V+  M++ GI PT+ ++  +L +Y K G V +   ++++M + G  P+    N 
Sbjct: 196 LSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNV 255

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G+ E+ + ++  M          TYN LIN + + G   +   L + +  +R
Sbjct: 256 LVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRR 315

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             P + T+ + +    +          F +M+ +   PD
Sbjct: 316 AFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPD 354



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 74/179 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  + E M   G+ P   ++  ++  + K G++ K   V N+M   G+ P       
Sbjct: 511 FEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTV 570

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +      +      + M + S  A++ TYN +IN       +++    F  +  K 
Sbjct: 571 LIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKG 630

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           + P+  ++T  +        +   L ++ EM+D    PD  T  V +     + Q+  V
Sbjct: 631 ILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVHAV 689



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 64/159 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  + EEM      PT+ ++  L+    K   V       + M KS   PD    NS
Sbjct: 301 FVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNS 360

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y R G   +   +   ++       + TYN LI+     G+++    L + +  + 
Sbjct: 361 LLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQG 420

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L PD+ T+T  +    +          F EM+  G  PD
Sbjct: 421 LFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPD 459


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 10/208 (4%)

Query: 35  INFLLLQHTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           I F+   H  N  +  +      SDA+ VFEE     I         ++TA S+  +   
Sbjct: 433 IGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTS----MITALSQCDHGEG 488

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              +  +M + GL+PD FV++S+LN    L  +E+ ++V   + K  + +D    N L+ 
Sbjct: 489 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVY 548

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            Y + G IE  E  F SLP +     VV+W++ +   ++    +R LE+F  M+D G  P
Sbjct: 549 TYAKCGSIEDAELAFSSLPER----GVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 604

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +  T   ++ AC+    +++      +M
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKRYFNSM 632



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 21/198 (10%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+E+      P   S   L+TAYS  G         + M   G+  + F +  +L 
Sbjct: 56  ARRVFDEIP----DPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK 111

Query: 118 LY--GRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
                RLG Q   M     AM  G + +D+   N L+ +YG  GF++    +F    ++R
Sbjct: 112 CVPDARLGAQVHAM-----AMATG-FGSDVFVANALVAMYGGFGFMDDARRVFNEADSER 165

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE--- 231
              + V+W   ++AY +       +++F EM+ +G  P       +++AC+    IE   
Sbjct: 166 ---NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGR 222

Query: 232 QVTTLVRTM--HKDMKTA 247
           QV  +V  M   KD+ TA
Sbjct: 223 QVHAMVVRMGYDKDVFTA 240



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 7/172 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  VF E           S   L++AY K         V  +M  SG++P  F  +
Sbjct: 150 FMDDARRVFNEADS---ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFS 206

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N        E   +V   + +  Y  D+ T N L+++Y + G ++    +F+ +P  
Sbjct: 207 CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-- 264

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
               DVV+W + ++         R +E+  +M  +G  P+  T   ++ ACS
Sbjct: 265 --DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACS 314



 Score = 45.1 bits (105), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 4/157 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF EM   GI PT      ++ A + + N+     V   + + G   D F  N+++
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALV 244

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++Y ++G+ +    +   M      +D+ ++N LI+     G   +   L   +    L 
Sbjct: 245 DMYMKMGRVDIASVIFEKMPD----SDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           P+V T +S L A S    +    +I   MI A    D
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD 337


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 1/186 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A+ VF+ M R    P ++S+  L+ A+    N+ +   V N+M ++GLKPD  V N+M+
Sbjct: 308 EANQVFDRM-RDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMI 366

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  +  +  ++   M+    A ++ TY +LI  + + G ++     F+ +     +
Sbjct: 367 EGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQ 426

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV T+T  L  Y   K   R   + EEM   GC PDG T   LI   ++ +  +    +
Sbjct: 427 PDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARI 486

Query: 237 VRTMHK 242
            + M K
Sbjct: 487 YKKMIK 492



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 2/192 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FE MK  G  P + ++ +L+  + K G +        +M   G +PD      +L
Sbjct: 377 EAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 436

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG   + +++  +L  M +     D  TYN LI +       +    +++ +  K L+
Sbjct: 437 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLE 496

Query: 177 PDVVTWTSRLAAY-SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           P + T+   + +Y    + Y     ++EEM   G  PD  +  V I+      + E+   
Sbjct: 497 PTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACK 556

Query: 236 LVRTM-HKDMKT 246
            +  M  K MKT
Sbjct: 557 YIEEMIQKGMKT 568


>gi|302810470|ref|XP_002986926.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
 gi|300145331|gb|EFJ12008.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
          Length = 458

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 71/148 (47%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AY+K     K   V+  +H+   + D    N ++N YGR G+  +M +  T+M+ G 
Sbjct: 242 LMAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGG 301

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TY  LIN YG+ G   K+  L + +   +++PD   + S L AY R        
Sbjct: 302 VRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSID 361

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSE 227
             F  M + GC PD  T  +LI A  S+
Sbjct: 362 RYFAAMQEQGCKPDHLTYNILIQAYRSQ 389



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 45/245 (18%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++F +   I         S A  +  +M   GI P   ++ ++L AY+K G++ K   
Sbjct: 125 SPDVFTYSLLIKSCCDCGQLSRAADLLADMTARGIQPNRVTYNIILDAYAKCGSLDKLHD 184

Query: 96  VINQMHKS--------------------------------------GLKPDTFVINSMLN 117
           +  QM +S                                         PD+  ++S++ 
Sbjct: 185 LALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQRLTTPSDGPDSLTLHSLMA 244

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +   F+KM  V+  + +  Y  D  TYNILIN YGR G   +M   F S+    ++P
Sbjct: 245 AYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGVRP 304

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+ + +  Y +  + R+   + E+M      PD      ++ A      I  +    
Sbjct: 305 DSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDRYF 364

Query: 238 RTMHK 242
             M +
Sbjct: 365 AAMQE 369



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 12/213 (5%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSM 115
           +A ++F+ M   G  P+ ++   L++AY+++  ++    V+  M+ +    PD F  + +
Sbjct: 75  EAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLL 134

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL----FQSLP 171
           +      GQ  +  ++L  M       +  TYNI+++ Y + G ++K+  L     QS P
Sbjct: 135 IKSCCDCGQLSRAADLLADMTARGIQPNRVTYNIILDAYAKCGSLDKLHDLALQMLQS-P 193

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +   +PD  +  + +  +  +   RR  E F+ +      PD  T   L++A +  +  +
Sbjct: 194 SPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQRLTTPSDGPDSLTLHSLMAAYAKAEMFD 253

Query: 232 QVTTLVRTMHK-----DMKTALPIYFNLYGEKG 259
           ++  +VR +H+     D  T   I  N YG  G
Sbjct: 254 KMHAVVRYIHRYHYQVDAVT-YNILINAYGRAG 285



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 63/140 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   HAV   + R        ++ +L+ AY + G   +       M   G++PD+    +
Sbjct: 252 FDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCT 311

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+ G   K+  +L  M       D + YN +++ Y R   I  ++  F ++  + 
Sbjct: 312 LINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDRYFAAMQEQG 371

Query: 175 LKPDVVTWTSRLAAYSRKKL 194
            KPD +T+   + AY  + L
Sbjct: 372 CKPDHLTYNILIQAYRSQGL 391



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F  MK  G+ P   ++  L+  Y K G   K   ++ QM    ++PDT + NS+L+ Y 
Sbjct: 293 TFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYR 352

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           R      ++    AM++     D  TYNILI  Y   G  +K +
Sbjct: 353 RASDISSIDRYFAAMQEQGCKPDHLTYNILIQAYRSQGLTDKAD 396



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 123 GQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           GQ+E   +V   +     Y     TY  ++ + G+    ++   LFQ++ A    P    
Sbjct: 35  GQWEAALKVFELLRSQQWYQPYAGTYIRMLEMLGKCKRPDEAASLFQTMLADGCGPSREA 94

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +T+ ++AY+R  L    +E+ + M     C PD  T  +LI +C    Q+ +   L+  M
Sbjct: 95  FTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRAADLLADM 154


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 3/195 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  EM R G+TP++ ++  L+ +  K GN+ +    ++QM   GL P+     +
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G   +   VL  M    ++  + TYN LIN +   G +E    + + +  K 
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PDVV++++ L+ + R       L +  EM++ G  PD  T   LI     + + ++  
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505

Query: 235 TLVRTMHKDMKTALP 249
            L   M   ++  LP
Sbjct: 506 DLYEEM---LRVGLP 517



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 99/194 (51%), Gaps = 6/194 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A    ++M+  G+ P  +++  L+  +S+ G + +   V+ +M+ +G  P     N+++N
Sbjct: 364 AMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN 423

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G+ E    VL  M++   + D+ +Y+ +++ + R   +++   + + +  K +KP
Sbjct: 424 GHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKP 483

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T++S +  +  ++  +   +++EEM+  G  PD  T   LI+A   E  +E+   L 
Sbjct: 484 DTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL- 542

Query: 238 RTMHKDM--KTALP 249
              H +M  K  LP
Sbjct: 543 ---HNEMVEKGVLP 553



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 7/210 (3%)

Query: 41  QHTPNLFV-------FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           Q +PN+F        F F+     A  +F++M+  G  P + ++  L+  Y K   +   
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             ++  M   GL+P+    N ++N   R G+ +++  VLT M +  Y+ D  TYN LI  
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           Y + G   +   +   +    L P V+T+TS + +  +     R +E  ++M   G  P+
Sbjct: 320 YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPN 379

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             T   L+   S +  + +   ++R M+ +
Sbjct: 380 ERTYTTLVDGFSQKGYMNEAYRVLREMNDN 409



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 1/182 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AV E+MK  G++P + S+  +L+ + ++ +V +   V  +M + G+KPDT   +S++
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +    + ++  ++   M +     D  TY  LIN Y   G +EK   L   +  K + 
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT++  +   +++   R    +  ++      P   T   LI  CS+  + + V +L
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSN-IEFKSVVSL 611

Query: 237 VR 238
           ++
Sbjct: 612 IK 613



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 84/173 (48%), Gaps = 1/173 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  VF+EM    ++P + ++ +L+  +   GN+     + ++M   G  P+    N+
Sbjct: 186 ISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNT 245

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y +L + +   ++L +M       ++ +YN++IN   R G ++++  +   +  + 
Sbjct: 246 LIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG 305

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSS 226
              D VT+ + +  Y ++  + + L +  EM+  G  P   T   LI S C +
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 92/196 (46%), Gaps = 15/196 (7%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  ++EEM R+G+ P   ++  L+ AY   G++ K   + N+M + G+ PD    + ++
Sbjct: 503 EACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLI 562

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNI--------------LINIYGRGGFIE 161
           N   +  +  + + +L  +  + S  +D++ + +              LI  +   G + 
Sbjct: 563 NGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMT 622

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + + +F+S+  K  KPD   +   +  + R    R+   +++EM+ +G      T   L+
Sbjct: 623 EADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALV 682

Query: 222 SACSSEDQIEQVTTLV 237
            A   E ++ ++ +++
Sbjct: 683 KALHKEGKVNELNSVI 698



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/186 (19%), Positives = 76/186 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D   +   M   G+ P + S+ +++    + G + +   V+ +M++ G   D    N+
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT 315

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + G F +   +   M +      + TY  LI+   + G + +       +  + 
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+  T+T+ +  +S+K        +  EM D G  P   T   LI+      ++E   
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435

Query: 235 TLVRTM 240
            ++  M
Sbjct: 436 AVLEDM 441



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 5/177 (2%)

Query: 69  GITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127
           G  P + S+  +L A  ++  N++  E V  +M +S + P+ F  N ++  +   G  + 
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223

Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
              +   ME      ++ TYN LI+ Y +   I+    L +S+  K L+P+++++   + 
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
              R+   +    +  EM   G   D  T   LI     E    Q       MH +M
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL----VMHAEM 336


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 97/183 (53%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++  ++K  G++P++ ++ +L++ + K G+ +    V+ +M + G+KP       +++
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILID 416

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R+   EK  ++ + ME+     D+ TY++LI+ +   G + +   LF+ + AK+L+P
Sbjct: 417 TFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEP 476

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V + + +  Y ++    R L +F EM +    P+  + + +I     E + ++   LV
Sbjct: 477 NKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLV 536

Query: 238 RTM 240
             M
Sbjct: 537 EKM 539



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 88/184 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM+  G++  + ++  L+    +     +   V++QM   G+ P+    N+++
Sbjct: 286 DAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLI 345

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +  +G+  K   +   ++    +  + TYNIL++ + + G       + + +  + +K
Sbjct: 346 DGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIK 405

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P  +T+T  +  ++R     + +++   M + G  PD  T  VLI     + Q+ + + L
Sbjct: 406 PSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 237 VRTM 240
            + M
Sbjct: 466 FKLM 469



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 85/182 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++E+M+  G+ P + ++  ++  + K G       + ++M + G+  +    N+++    
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R  +  +  +V+  M+      ++ TYN LI+ +   G + K   L + L ++ L P +V
Sbjct: 315 REMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLV 374

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   ++ + +K       ++ +EM + G  P   T  +LI   +  D +E+   L   M
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPM 434

Query: 241 HK 242
            +
Sbjct: 435 EE 436



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/177 (18%), Positives = 79/177 (44%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           E++  G +P +  +  L+    K G + K + +  +M K GL  + +    +++   + G
Sbjct: 188 ELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG 247

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             ++  E+   M++     ++ TYN ++N + + G  +    LF  +  + +  ++VT+ 
Sbjct: 248 IKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYN 307

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + +    R+       ++ ++M   G  P+  T   LI       ++ +  +L R +
Sbjct: 308 TLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDL 364



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/200 (18%), Positives = 89/200 (44%), Gaps = 2/200 (1%)

Query: 45  NLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103
           NL  F+  S  F+     F E K + +   + S  +++    + G + K   ++ ++ + 
Sbjct: 134 NLLTFVVGSSSFNQWWRFFNESK-IKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREF 192

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G  P+  +  ++++   + G+ EK +++   M K    A+  TY +LI+   + G  ++ 
Sbjct: 193 GFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQG 252

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             +++ +    + P++ T+   +  + +    +   ++F+EM + G   +  T   LI  
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGG 312

Query: 224 CSSEDQIEQVTTLVRTMHKD 243
              E +  +   ++  M  D
Sbjct: 313 LCREMKANEANKVMDQMKSD 332


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 34  LINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           LI+       PN+FV+   I         S+A ++  E+++  I P + ++ +L+     
Sbjct: 321 LIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCG 380

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
              + + +G++ +M K G  P+    N++++ Y + G  EK  EV + M +     +I T
Sbjct: 381 VDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIIT 440

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           ++ LI+ Y + G +E   GL+  +  K L PDVV +T+ +  + +    +    + +EM 
Sbjct: 441 FSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +AG +P+  T   LI     + +I     L
Sbjct: 501 EAGLHPNVFTLSCLIDGLCKDGRISDAIKL 530



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 4/193 (2%)

Query: 41  QHTPNLFVFIFSIYFSDAHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           + TPN+F  +  I FS+   V E +    ++ + P M++  ++L    K G       V 
Sbjct: 123 KFTPNVF-GVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVY 181

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
             M   G  P+     ++++   R G F K   +   M +      +  Y ILI      
Sbjct: 182 GDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGE 241

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
             I + E +F+++    + P++ T+ + +  Y +    ++ LE+++EM+  G  P+  T 
Sbjct: 242 SRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTF 301

Query: 218 KVLISACSSEDQI 230
            +LI      D++
Sbjct: 302 GILIDGLCKTDEM 314



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 74/186 (39%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A ++F  M+  G+ P + ++  ++  Y K  +V K   +  +M   GL P+      
Sbjct: 244 ISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGI 303

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  +     + L  M       +I  YN LI+ Y + G + +   L   +    
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDV T++  +              + +EM   G  P+  T   LI     E  +E+  
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 235 TLVRTM 240
            +   M
Sbjct: 424 EVCSQM 429



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V++++  S   P+ F +  ++  +  +G    +EE L    K      +   N++++   
Sbjct: 115 VLSRLESSKFTPNVFGV--LIIAFSEMGL---VEEALWVYYKMDVLPAMQACNMVLDGLV 169

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  + M  ++  + A+   P+VVT+ + +    R+  + +   +F+EMI+   +P   
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
              +LI     E +I +  ++ RTM 
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMR 255



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 13/179 (7%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M   GI P + +   L+  Y K G +    G+  +M   GL PD     ++++
Sbjct: 422 AIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALID 481

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF---------- 167
            + + G  ++   +   M++     ++ T + LI+   + G I     LF          
Sbjct: 482 GHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTG 541

Query: 168 ---QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
                L      P+ V +T+ +          +  + F +M  +G  PD  T  V+I  
Sbjct: 542 SKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 92/178 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F EM+ L I     S+  LL+ Y+K G   +   ++ +M   G+K D    N+
Sbjct: 425 FDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  YG+ G+++++++V   M++     ++ TY+ LI+ Y +GG  ++   +F+   +  
Sbjct: 485 LLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAG 544

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           L+ DVV +++ + A  +  L    + + +EM   G  P+  T   +I A      +E+
Sbjct: 545 LRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMER 602



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 91/186 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M    I P + S+  ++  ++K G   +   +  +M    +  D    N++L+
Sbjct: 393 AFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLS 452

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y ++G+ E+  ++L  M       D+ TYN L+  YG+ G  ++++ +F  +  + + P
Sbjct: 453 IYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLP 512

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+++ +  YS+  LY+  +E+F E   AG   D      LI A      +    +L+
Sbjct: 513 NLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLI 572

Query: 238 RTMHKD 243
             M K+
Sbjct: 573 DEMTKE 578



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 84/185 (45%), Gaps = 1/185 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE     G   T+ +   L++AY ++G   +   V N M + GL+P+    N++++
Sbjct: 252 AKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVID 311

Query: 118 LYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             G+ G +F+++ +    M++     D  T+N L+ +  RGG  E    LF  +  +R++
Sbjct: 312 ACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIE 371

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DV ++ + L A  +        EI  +M      P+  +   +I   +   + ++   L
Sbjct: 372 QDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNL 431

Query: 237 VRTMH 241
              M 
Sbjct: 432 FGEMR 436



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 80/168 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM    I   + S+  LL A  K G +     ++ QM    + P+    +++++
Sbjct: 358 ARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVID 417

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+F++   +   M   + A D  +YN L++IY + G  E+   + + + +  +K 
Sbjct: 418 GFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKK 477

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           DVVT+ + L  Y ++  Y    ++F EM      P+  T   LI   S
Sbjct: 478 DVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYS 525



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 82/189 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F      F+EM+R  + P   +   LL   S+ G       + ++M    ++ D F  N+
Sbjct: 320 FKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNT 379

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   + GQ +   E+L  M       ++ +Y+ +I+ + + G  ++   LF  +    
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLN 439

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +  D V++ + L+ Y++       L+I  EM   G   D  T   L+     + + ++V 
Sbjct: 440 IALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVK 499

Query: 235 TLVRTMHKD 243
            +   M ++
Sbjct: 500 KVFAEMKRE 508



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 21/208 (10%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +   VF EMKR  + P + ++  L+  YSK G   +   V  +   +GL+ D  + ++
Sbjct: 495 YDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSA 554

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ--SLPA 172
           +++   + G       ++  M K   + ++ TYN +I+ +GR   +E+        SLP 
Sbjct: 555 LIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSADYSNGGSLPF 614

Query: 173 KRLKPDVVTWTS---------RLAAYSRKKLYRRC----------LEIFEEMIDAGCYPD 213
                  +T T          +L +    ++ + C          LE+F +M      P+
Sbjct: 615 SSSALSELTETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQLEIKPN 674

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMH 241
             T   +++ACS  +  E  + L+  + 
Sbjct: 675 VVTFSAILNACSRCNSFEDASMLLEELR 702



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 1/153 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++   + G V   + +       G     +  +++++ YGR G  E+   V  +M++  
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298

Query: 140 YAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
              ++ TYN +I+  G+GG   +++   F  +    ++PD +T+ S LA  SR  L+   
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAA 358

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             +F+EM +     D  +   L+ A     Q++
Sbjct: 359 RNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMD 391



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           + ++M++  GR G+    + +      G Y   +  ++ LI+ YGR G  E+   +F S+
Sbjct: 235 LASAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSM 294

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
               L+P++VT+ + + A  +  + +++  + F+EM      PD  T   L++ CS    
Sbjct: 295 KEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGL 354

Query: 230 IEQVTTLVRTM 240
            E    L   M
Sbjct: 355 WEAARNLFDEM 365


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 92/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +E+ + G+ P + ++  L++A S+  N+ +  GV + M  +  +PD +  N+M++
Sbjct: 320 AIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMIS 379

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR G   K E +   ++   ++ D  TYN L+  + + G  EK+  + + +       
Sbjct: 380 VYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGK 439

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y +   +   L ++ +M  +G  PD  T  VLI       +IE+ + ++
Sbjct: 440 DEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVM 499

Query: 238 RTM 240
             M
Sbjct: 500 SEM 502



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 80/153 (52%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +   V+  MK  G  PTM  + L++    +   V     ++++M ++G KPD  + NS+L
Sbjct: 912  EVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVL 971

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             LY  + +F+ M  +   ++    A D  TYN LI +Y R    E+   L   + +  L+
Sbjct: 972  KLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLE 1031

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P   T+ S +AA+S+++LY +  E+FEE+   G
Sbjct: 1032 PKRDTYRSMIAAFSKQQLYDQAEELFEELRSNG 1064



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 80/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VF  M+     P + ++  +++ Y + G   K E +  ++  +G  PD    NS
Sbjct: 352 LKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNS 411

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + + G  EK+ ++   M K  +  D  TYN +I++YG+ G  ++   L++ + +  
Sbjct: 412 LLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSG 471

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             PD VT+T  +    +        ++  EM+DAG  P   T   LI A
Sbjct: 472 RNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICA 520



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 45/236 (19%)

Query: 44  PNLFVF--IFSIY----FS-DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y    F+  A  +FE++K  G +P   ++  LL A+SK GN  K   +
Sbjct: 369 PDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDI 428

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M K G   D    N+++++YG+ G+ ++   +   M+      D  TY +LI++ G+
Sbjct: 429 SEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGK 488

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-------KKLYRRCLE--------- 200
              IE+   +   +    +KP + T+++ + AY++       ++ + R  E         
Sbjct: 489 ASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLA 548

Query: 201 -------------------IFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQVT 234
                              +++EMI+AG  PD G  +V++ A   E   D IE+V 
Sbjct: 549 YSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVV 604



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 6/177 (3%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           I  T++ +  ++  Y++ GN  K   + N M + G +PD    N+++N   ++     + 
Sbjct: 260 IADTVQVYNAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLIN--AKVKSCATVS 317

Query: 130 ----EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
               E+L  + K     DI TYN LI+   R   +++  G+F  + + R +PD+ T+ + 
Sbjct: 318 GLAIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAM 377

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           ++ Y R     +   +FE++   G  PD  T   L+ A S E   E+V  +   M K
Sbjct: 378 ISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVK 434



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 3/200 (1%)

Query: 60   AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            ++  +MK LG+ P   ++  ++ A+SK     + E +  ++  +G K D    + M+ +Y
Sbjct: 1020 SLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMY 1079

Query: 120  GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               G  +K E +L  M++     + +T ++L+  YG+ G  E+ + + ++L       D 
Sbjct: 1080 RTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDT 1139

Query: 180  VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            + ++S + AY +K   +  +E   EM +A   PD       I A S   ++     L+  
Sbjct: 1140 LPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNA 1199

Query: 240  MHKDMKTALPIYFNLYGEKG 259
            +   +   LPI   L GEK 
Sbjct: 1200 LQA-VGFDLPI--RLLGEKS 1216



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%)

Query: 46   LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
            +  + FS  +  A A+F  M R G +PT++S   LL A    G +++   VI ++    L
Sbjct: 831  IHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDL 890

Query: 106  KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            K     I  ML  + + G   ++++V   M+   Y   +  Y ++I +  R   +  +  
Sbjct: 891  KISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRV 950

Query: 166  LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            +   +     KPD+  + S L  YS  + ++    I++ + DAG  PD  T   LI+   
Sbjct: 951  MLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYC 1010

Query: 226  SEDQIEQVTTLVRTM 240
             + + E+  +L+  M
Sbjct: 1011 RDHRPEEGLSLMHKM 1025



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 17/186 (9%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  ++ +MK  G  P   ++ +L+    K   + +   V+++M  +G+KP     +++
Sbjct: 458 DEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSAL 517

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y ++G+  + EE    M +    AD   Y+++++ + R   I+K   L+Q +     
Sbjct: 518 ICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGF 577

Query: 176 KPDVVTWTSRLAAYSRKKL---YRRCLEIFEE------------MIDAGCYPDGGTAKVL 220
            PD   +   L A  R+ +     R ++  +E            ++  GCY  G  AK+L
Sbjct: 578 TPDTGLYEVMLPALVRENMGDVIERVVQDTKELGSMNPHDISSVLVKGGCYDHG--AKML 635

Query: 221 ISACSS 226
             A S+
Sbjct: 636 KVAISN 641



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 65/136 (47%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +  A  +FEE++  G       + L++  Y  +G+  K E ++  M ++G++P+T  ++ 
Sbjct: 1050 YDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHL 1109

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++  YG+ GQ E+ + +L  +       D   Y+ +I+ Y + G  +        +    
Sbjct: 1110 LMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAA 1169

Query: 175  LKPDVVTWTSRLAAYS 190
            ++PD   WT  + A S
Sbjct: 1170 IEPDHRIWTCFIRAAS 1185



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 8/215 (3%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVINSM 115
            D   +  EM   G  P ++    +L  YS         GVI QM   +GL PD    N++
Sbjct: 947  DVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNM-GVIYQMIQDAGLAPDEETYNTL 1005

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            + +Y R  + E+   ++  M+         TY  +I  + +    ++ E LF+ L +   
Sbjct: 1006 ITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGY 1065

Query: 176  KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            K D   +   +  Y     +++   + E M +AG  P+  T  +L+ +     Q E+   
Sbjct: 1066 KLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADR 1125

Query: 236  L---VRTMHKDMKTALPI--YFNLYGEKGVARSNL 265
            +   +RTM   + T LP     + Y +KG A++ +
Sbjct: 1126 ILKNLRTMGAVLDT-LPYSSVIDAYLKKGDAKAGI 1159



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 6/194 (3%)

Query: 60  AVFEEMKRLGITPTMKSHML---LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  EE +  G   T +S  +   L+   +K+        + + M  +G++P   +  SM+
Sbjct: 700 AALEEYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMV 759

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL--INIYGRGGFIEKMEGLFQSLPAKR 174
           ++Y R+G  E  + +L   EK     D  T +I+  I  YG+    +  E + ++L  + 
Sbjct: 760 SVYCRIGFPETAQHLLYHAEKNDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRC 819

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            K D   W + + AY+    Y R   IF  M+  G  P   +   L+ A   + ++ ++ 
Sbjct: 820 SKMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELY 879

Query: 235 TLVRTMHK-DMKTA 247
            +++ +   D+K +
Sbjct: 880 VVIQELQDMDLKIS 893



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 50/115 (43%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  + E MK  GI P   +  LL+ +Y K+G   + + ++  +   G   DT   +S+++
Sbjct: 1088 AENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVID 1147

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
             Y + G  +   E LT M++ +   D   +   I      G +     L  +L A
Sbjct: 1148 AYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQA 1202


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 91/185 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +FEEM    + P + ++  L+    K+G ++    ++++MH  G  PD    +S+
Sbjct: 222 DEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSL 281

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +  Q +K   +L  ++      ++ TY ILI+   +GG +E    +F+ L  K  
Sbjct: 282 LDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGY 341

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
              V T+T  +  +  K L+   L +  +M D  C+P+  T +++I +    D+ ++   
Sbjct: 342 NITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIIIRSLFDNDENDKAEN 401

Query: 236 LVRTM 240
           L+R M
Sbjct: 402 LLREM 406



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 78/156 (50%)

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
           +  GNV + + V+  M K G+ P+    +S+++ Y  + +    + + + M      A++
Sbjct: 146 NNEGNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANV 205

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
            +YNI+IN + +    ++   LF+ +  ++L PDVVT+ S +    +       L++ +E
Sbjct: 206 WSYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDE 265

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           M D G  PD  T   L+ A     Q+++   L++ +
Sbjct: 266 MHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNL 301



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 77/184 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V   M + GI P   ++  L+  Y     V   +G+ + M   G+  + +  N M+
Sbjct: 153 EAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMI 212

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + ++   ++   +   M       D+ TYN LIN   + G I     L   +  +   
Sbjct: 213 NGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQP 272

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD++T++S L A  +     + + + + + D G  P+  T  +LI       ++E    +
Sbjct: 273 PDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNI 332

Query: 237 VRTM 240
              +
Sbjct: 333 FEDL 336



 Score = 40.0 bits (92), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 52/119 (43%)

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  ++ + VL  M K     +  TY+ L++ Y     +   +G+F ++  + +  +V ++
Sbjct: 149 GNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSY 208

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
              +  + + K+    + +FEEM      PD  T   LI+      +I     LV  MH
Sbjct: 209 NIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMH 267


>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 553

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 87/182 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A AVFEEM   G+ PT K++ +LL A+S +G V +   V   M +    PD     +M
Sbjct: 332 EEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVFKSMRRDKYMPDLCSYTTM 391

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ Y      E  E+    + +  +  ++ TY  LI  Y +   IEK+   ++ +  + +
Sbjct: 392 LSAYVNAPDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKANDIEKVMEKYEEMLGRGI 451

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           K +    T+ + A+ +   +   +  F+EM   G  PD     +L+S   +E+ I++   
Sbjct: 452 KANQTILTTIMDAHGKNGDFDSAVNWFKEMALNGLLPDQKAKNILLSLAKTEEDIKEANE 511

Query: 236 LV 237
           LV
Sbjct: 512 LV 513



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 15/228 (6%)

Query: 41  QHTPNLFVFIF--SIYFSDAHAVFEEMKRLGI---TPTMKSHMLLLTAYSKTGNVAKCEG 95
           Q   N+ ++++  S     A   F  M   GI   T T  S M   T Y +  N+     
Sbjct: 248 QKMFNMMIYMYKKSGSHEKARQTFALMAERGIKKATVTYNSLMSFETNYKEVSNI----- 302

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
             +QM ++ L+PD      ++N YG+  + E+   V   M           YNIL++ + 
Sbjct: 303 -YDQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFS 361

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             G +E+   +F+S+   +  PD+ ++T+ L+AY          + F+ +I  G  P+  
Sbjct: 362 ISGMVEQARIVFKSMRRDKYMPDLCSYTTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNVV 421

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
           T   LI   +  + IE+V      M     K  +T L    + +G+ G
Sbjct: 422 TYGTLIKGYAKANDIEKVMEKYEEMLGRGIKANQTILTTIMDAHGKNG 469



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 70/235 (29%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG--------------- 123
           +L+TAY K G+    E V+  M+K+G  P+     +++  YG+ G               
Sbjct: 145 MLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQTF 204

Query: 124 --------------------QFEKMEEVLTAM---EKGSYAADISTYNILINIYGRGGFI 160
                               +F++ EEV   +   EK     D   +N++I +Y + G  
Sbjct: 205 GPEPSAFTYQIILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMYKKSGSH 264

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLA--------------------------------A 188
           EK    F  +  + +K   VT+ S ++                                A
Sbjct: 265 EKARQTFALMAERGIKKATVTYNSLMSFETNYKEVSNIYDQMQRADLRPDVVSYALLINA 324

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           Y + +     L +FEEM+DAG  P      +L+ A S    +EQ   + ++M +D
Sbjct: 325 YGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVFKSMRRD 379



 Score = 37.4 bits (85), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/115 (19%), Positives = 51/115 (44%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  L  ++ +     A   F+ + + G  P + ++  L+  Y+K  ++ K      
Sbjct: 385 LCSYTTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKANDIEKVMEKYE 444

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M   G+K +  ++ ++++ +G+ G F+        M       D    NIL+++
Sbjct: 445 EMLGRGIKANQTILTTIMDAHGKNGDFDSAVNWFKEMALNGLLPDQKAKNILLSL 499


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 94/189 (49%), Gaps = 6/189 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  EM R G++P++ ++  L+ +  K  N+ +     +QM   GL+P+     +
Sbjct: 131 FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 190

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME---GLFQSLP 171
           +++ + R G   +   +L  M +  ++  + TYN  I+ +     +E+ME   G+ Q + 
Sbjct: 191 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGH---CVLERMEEALGVVQEMV 247

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            K L PDVV++++ ++ + RK    R  ++ +EM++ G  PD  T   LI       ++ 
Sbjct: 248 EKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLT 307

Query: 232 QVTTLVRTM 240
           +   L + M
Sbjct: 308 EACDLSQEM 316



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 91/194 (46%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F EM+R G  P + ++  L+ AY K G + +  G++  M   G++P+    N ++N   R
Sbjct: 33  FGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCR 92

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++  E+L  M    +  D  TYN L+N Y + G   +   +   +    + P VVT
Sbjct: 93  EGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVT 152

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +T+ + +  + +   R +E F++M   G  P+  T   LI   S +  + +   ++  M 
Sbjct: 153 YTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMT 212

Query: 242 KDMKTALPIYFNLY 255
           +   +   + +N +
Sbjct: 213 ESGFSPSVVTYNAF 226



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 1/186 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F++M+  G+ P  +++  L+  +S+ G + +   ++N+M +SG  P     N+ ++
Sbjct: 169 AMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 228

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  L + E+   V+  M +   A D+ +Y+ +I+ + R G +++   + Q +  K + P
Sbjct: 229 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 288

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT++S +      +      ++ +EM+D G  PD  T   LI+A   E  + +   L 
Sbjct: 289 DAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLH 348

Query: 238 RTM-HK 242
             M HK
Sbjct: 349 DEMIHK 354



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 84/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + + M   G+ P + S+ +++    + G++ +   ++ +M   G  PD    N+
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN Y + G F +   +   M +   +  + TY  LIN   +   + +    F  +  + 
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P+  T+T+ +  +SR+ L      I  EM ++G  P   T    I      +++E+  
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 240

Query: 235 TLVRTM 240
            +V+ M
Sbjct: 241 GVVQEM 246



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 81/159 (50%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M R  ++P + ++ +L+  +   G + K  G   +M ++G  P+    N++++ Y ++G+
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            ++   +L +M       ++ +YN++IN   R G +++   + + +  K   PD VT+ +
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            L  Y ++  + + L I  EM+  G  P   T   LI++
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 159



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 78/184 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + EEM   G TP   ++  LL  Y K GN  +   +  +M ++G+ P      +++
Sbjct: 98  EAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALI 157

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   +     +  E    M       +  TY  LI+ + R G + +   +   +      
Sbjct: 158 NSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFS 217

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P VVT+ + +  +   +     L + +EM++ G  PD  +   +IS    + ++++   +
Sbjct: 218 PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQM 277

Query: 237 VRTM 240
            + M
Sbjct: 278 KQEM 281



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 70/144 (48%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +S + P+ +  N ++  +  +G+ +K       ME+     ++ TYN LI+ Y + G 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I++  GL +S+ +K ++P+++++   +    R+   +   EI EEM   G  PD  T   
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 220 LISACSSEDQIEQVTTLVRTMHKD 243
           L++    E    Q   +   M ++
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRN 144



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 73/170 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V +EM   G+ P + S+  +++ + + G + +   +  +M + G+ PD    +S++
Sbjct: 238 EALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLI 297

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                + +  +  ++   M       D  TY  LIN Y   G + K   L   +  K   
Sbjct: 298 QGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFL 357

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           PD VT++  +   +++   R    +  ++I     P   T   LI  CS+
Sbjct: 358 PDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSN 407



 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 15/174 (8%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +EM   G++P   ++  L+    +   + +   +  +M   GL PD F   +++N Y   
Sbjct: 279 QEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVE 338

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G   K   +   M    +  D  TY++LIN   +     + + L   L  +   P  VT+
Sbjct: 339 GDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTY 398

Query: 183 ---------------TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
                           + +  +  K L      +FE M++    P      V+I
Sbjct: 399 DTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVII 452



 Score = 37.0 bits (84), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 7/142 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VFE M      P    + +++  + + GN+ K   +  +M  SG  P T  + +++
Sbjct: 428 EADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLI 487

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE---KMEGLFQSLP-- 171
               + G  E+M EV+    +     +     +L+ I  + G +E    +  L+  L   
Sbjct: 488 KALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVSRLYNKLSLK 547

Query: 172 --AKRLKPDVVTWTSRLAAYSR 191
             A  + P  +T TS+    SR
Sbjct: 548 CVASSVPPGALTQTSQKIFLSR 569


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A    E+MK LG  P + S+   + AY    +  K + V+ +M ++G  P+     +
Sbjct: 279 FDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMRENGCPPNAVTYTT 338

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   G+ GQ  K  EV   M+     AD   Y+ +I I G+ G ++    +F+ +P + 
Sbjct: 339 VMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVFEDMPKQG 398

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +  DVVT+ + ++           L + +EM D  C P+ GT   L+
Sbjct: 399 VVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLL 445



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 72/178 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  V+E+MK  G       +  ++    K G +     V   M K G+  D    N+
Sbjct: 349 LSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYNT 408

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++      + E    +L  ME GS   ++ TY+ L+ +  +   ++ ++ L   +    
Sbjct: 409 MISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMCCKKKRMKVLKFLLDHMFKND 468

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + PD+ T++  + A  +           EEM+  G  P   T K L     S   +E+
Sbjct: 469 ISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKGFTPKPSTLKGLAGELESLSMLEE 526


>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   FEEM+ LGI P + S+  L+  Y K   + K   V+ +M +  + PD     S++
Sbjct: 225 EAELFFEEMRELGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVITYTSII 284

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
              G +GQ +K  ++L  M++     D++ YN +I  Y     +     L   + +K L 
Sbjct: 285 GGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAVIRNYCIAKRLGDASNLMDEMASKGLS 344

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+      +      R    ++  M+++GC P+  +   LI      +++E   TL
Sbjct: 345 PNATTYNLFFRVFYWSNDLRNSWSLYRRMMESGCLPNTQSCMFLIRLFRKHEKVEMALTL 404

Query: 237 VRTM 240
              M
Sbjct: 405 WNDM 408



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           LL    +  ++     V +++ K   KP+    N +L+ +    Q E+ E     M +  
Sbjct: 182 LLRTLCQEKSMTDARNVYHRLKKE-FKPNLQTFNILLSGWK---QSEEAELFFEEMRELG 237

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+ +YN LI++Y +   +EK   + + +  + + PDV+T+TS +          +  
Sbjct: 238 IKPDVVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGLVGQPDKAR 297

Query: 200 EIFEEMIDAGCYPDGGTAKVLI 221
           +I  EM + GCYPD      +I
Sbjct: 298 DILNEMKEYGCYPDVAAYNAVI 319



 Score = 40.4 bits (93), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 89/209 (42%), Gaps = 14/209 (6%)

Query: 42  HTPN-----LFVFIFSIYFSDAHAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKC 93
           HTP      L++   S  F     V  +MKR     I+P  ++  ++L   +K  +V + 
Sbjct: 103 HTPYSLDTILYILGRSRKFDHIWDVLIKMKRKDRFLISP--RTMQIVLARVAKLCSVRQT 160

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
                +  K     DT   N++L    +         V   ++K  +  ++ T+NIL++ 
Sbjct: 161 VESFRKFKKFVSVLDTTCFNALLRTLCQEKSMTDARNVYHRLKK-EFKPNLQTFNILLSG 219

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + +    E+ E  F+ +    +KPDVV++ S +  Y + +   +  ++ E+M +    PD
Sbjct: 220 WKQS---EEAELFFEEMRELGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPD 276

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             T   +I       Q ++   ++  M +
Sbjct: 277 VITYTSIIGGLGLVGQPDKARDILNEMKE 305


>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
          Length = 859

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 103/217 (47%), Gaps = 3/217 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     + +EM  +   PT+ ++  ++ AY +   + +   V  +M K+G +PD     +
Sbjct: 382 FGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCT 441

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  E   ++ T M++   + D  TY+ ++N  G+GG +     LF  +    
Sbjct: 442 LIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENG 501

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +A  ++ + Y   ++++++M  AG  PD  T  +++        +++  
Sbjct: 502 CTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAE 561

Query: 235 TLVRTMHKDMKTALPIY---FNLYGEKGVARSNLGQY 268
            +   M  D     P+Y    +L+G+ G     LG Y
Sbjct: 562 AVFIEMRHDWAPDEPVYGLLVDLWGKAGNVDKALGWY 598



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 86/172 (50%), Gaps = 1/172 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + + A+ +F EM   G TP + ++ +++   +K  N      +   M  +G +PD    +
Sbjct: 486 HLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYS 545

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++ + G  G  ++ E V   M +  +A D   Y +L++++G+ G ++K  G + ++   
Sbjct: 546 IVMEVLGHCGHLDEAEAVFIEM-RHDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQD 604

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            L+P+V T  S L+A+ +   ++    + + M+  G  P   T  +L+S C+
Sbjct: 605 GLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCT 656



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  VFEEM++ G  P   ++  L+  ++K G +     +  +M + GL PDTF  +
Sbjct: 416 YLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYS 475

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M+N  G+ G      ++   M +     ++ TYNI+I +  +    E +  L++ +   
Sbjct: 476 AMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVA 535

Query: 174 RLKPDVVTWT 183
             +PD +T++
Sbjct: 536 GFRPDKITYS 545



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 58/121 (47%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+ + G+  QF  M ++L  M        + TYN +I+ YGR  ++ 
Sbjct: 359 QPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLR 418

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F+ +     +PD VT+ + +  +++       ++++  M + G  PD  T   ++
Sbjct: 419 EAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMV 478

Query: 222 S 222
           +
Sbjct: 479 N 479



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 13/132 (9%)

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGR----LGQFEKMEEVLTAMEKGSYAADISTYNI 149
           E V++ +H    K D F  N +L L       LG F+ ++       +  +  D  +Y  
Sbjct: 321 EHVLDNLH---CKIDAFQANQVLKLLHDHTIALGFFQWLKR------QPGFKHDGHSYTT 371

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +I I G+      M  L   + +   KP VVT+   + AY R    R  +++FEEM  AG
Sbjct: 372 MIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAG 431

Query: 210 CYPDGGTAKVLI 221
             PD  T   LI
Sbjct: 432 YEPDRVTYCTLI 443


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM + G+     ++  L+    + G+    + +  +M   G+ PD    + +L+   
Sbjct: 401 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 460

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ EK   V   ++K     DI TYNI+I    + G +E    LF SL  K +KP+V+
Sbjct: 461 KYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVI 520

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +T+ ++ + RK L      +F EM + G  P+ GT   LI A   +        L++ M
Sbjct: 521 IYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 580

Query: 241 H 241
            
Sbjct: 581 R 581



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 84/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++ ++M++  I   +  +  ++ A     NV     +  +M   G++P+    NS++ 
Sbjct: 223 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 282

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++     +L+ M +     ++ T++ LI+ + + G + + E L+  +  + + P
Sbjct: 283 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 342

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T++S +  +           +FE MI   C+P+  T   LI       ++E+   L 
Sbjct: 343 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 402

Query: 238 RTMHK 242
           R M +
Sbjct: 403 REMSQ 407



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 92/191 (48%), Gaps = 6/191 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +  +M    I P + +   L+ A+ K G + + E + ++M K  + PD F  +S
Sbjct: 290 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 349

Query: 115 MLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           ++N   ++ RL + + M E++ + +      ++ TYN LI  + +   +E+   LF+ + 
Sbjct: 350 LINGFCMHDRLDEAKHMFELMISKD---CFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 406

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            + L  + VT+ + +    +        +IF++M+  G  PD  T  +L+       ++E
Sbjct: 407 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 466

Query: 232 QVTTLVRTMHK 242
           +   +   + K
Sbjct: 467 KALVVFEYLQK 477



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 87/188 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  +F EM   GI P + ++  L+      G  +    +++ M +  + P+    +++
Sbjct: 256 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 315

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+  + E++   M K S   DI TY+ LIN +     +++ + +F+ + +K  
Sbjct: 316 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 375

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+ + +  + + K     +E+F EM   G   +  T   LI         +    
Sbjct: 376 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 435

Query: 236 LVRTMHKD 243
           + + M  D
Sbjct: 436 IFKKMVSD 443



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 79/188 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A A+ ++M  +   P   +   L+         ++   +I++M   G +PD F   +
Sbjct: 150 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 209

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G  +    +L  MEKG   AD+  Y  +I+       +     LF  +  K 
Sbjct: 210 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 269

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VVT+ S +        +     +  +MI+    P+  T   LI A   E ++ +  
Sbjct: 270 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 329

Query: 235 TLVRTMHK 242
            L   M K
Sbjct: 330 KLYDEMIK 337



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/209 (18%), Positives = 91/209 (43%), Gaps = 7/209 (3%)

Query: 39  LLQHTPNLFVF---IFSIYF----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA 91
           ++++ PN   F   I  ++     S+A A+ + M   G  P + ++  ++    K G++ 
Sbjct: 162 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 221

Query: 92  KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
               ++ +M K  ++ D  +  ++++             + T M+      ++ TYN LI
Sbjct: 222 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 281

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
                 G       L   +  +++ P+VVT+++ + A+ ++       ++++EMI     
Sbjct: 282 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 341

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           PD  T   LI+     D++++   +   M
Sbjct: 342 PDIFTYSSLINGFCMHDRLDEAKHMFELM 370



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 78/193 (40%)

Query: 50  IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
           +  +   DA  +F EM +    P++     LL+A +K         +  +M    +  D 
Sbjct: 40  LLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDL 99

Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
           +  N ++N + R  Q      VL  M K  Y  DI T + L+N Y  G  I +   L   
Sbjct: 100 YSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQ 159

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +     +P+ VT+ + +            + + + M+  GC PD  T   +++       
Sbjct: 160 MFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 219

Query: 230 IEQVTTLVRTMHK 242
           I+   +L++ M K
Sbjct: 220 IDLALSLLKKMEK 232


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 87/162 (53%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F++M   G  PT+ ++ +++    K G++    G+  +M   GL PDT   NSM++ YG+
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G+ +        M+  S   D+ TYN LIN + + G + K    ++ +    LKP+VV+
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVS 240

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +++ + A+ ++ + ++ ++ + +M   G  P+  T   L+ A
Sbjct: 241 YSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDA 282



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 5/202 (2%)

Query: 46  LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           +F  +FS+        +A   F +MKR  + P  +S   LL  ++K G     +     M
Sbjct: 65  VFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDM 124

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             +G KP  F  N M++   + G  E    +   M+      D  TYN +I+ YG+ G +
Sbjct: 125 IGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRL 184

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           +     F+ + +   +PDV+T+ S +  + +     + LE + EM  +G  P+  +   L
Sbjct: 185 DDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTL 244

Query: 221 ISACSSEDQIEQVTTLVRTMHK 242
           + A   ED ++Q       M +
Sbjct: 245 VDAFCKEDMMQQAIKFYVDMRR 266



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 85/188 (45%), Gaps = 1/188 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M   G+ P + S+  L+  + K  N+ +   ++N++   G++PD  +  + +
Sbjct: 326 EAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFI 385

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                L + E  + V+  M++    A+   Y  L++ Y + G   +   L + +     +
Sbjct: 386 WGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHE 445

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             VVT+   +    + KL  + ++ F  M  D G  P+      +I     E+Q++  TT
Sbjct: 446 VTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATT 505

Query: 236 LVRTMHKD 243
           L   M ++
Sbjct: 506 LFEQMAQE 513



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 1/194 (0%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           + EMK+ G+ P + S+  L+ A+ K   + +       M + G  P+ F   S+++   +
Sbjct: 226 YREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCK 285

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G       +   M +     ++ TY  LI+       +++ E LF  +    + P++ +
Sbjct: 286 IGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLAS 345

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + +  + + K   R LE+  E+   G  PD       I      ++IE    ++  M 
Sbjct: 346 YNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQ 405

Query: 242 KD-MKTALPIYFNL 254
           ++ +K    IY  L
Sbjct: 406 ENGIKANTLIYTTL 419



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/166 (18%), Positives = 74/166 (44%), Gaps = 1/166 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+ +     A  +  E+K  GI P +  +   +        +   + V+N+M ++G+K +
Sbjct: 353 FVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKAN 412

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           T +  ++++ Y + G   +   +L  M++  +   + T+ +LI+   +   + K    F 
Sbjct: 413 TLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFG 472

Query: 169 SLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +     L+P+   +T+ +    ++   +    +FE+M   G  PD
Sbjct: 473 RMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPD 518



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 1/154 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLY 119
           + EEM+ L    T+ +  +L+    K   V+K      +M    GL+P+  V  +M++  
Sbjct: 435 LLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGL 494

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +  Q +    +   M +     D + Y  L++   + G + +   L   +    +K D+
Sbjct: 495 CKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDL 554

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + +TS +  +S+    ++     EEMI     PD
Sbjct: 555 LAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPD 588


>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
 gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 74/136 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +    +V E M++   +P++ +H + +  + K G++   E   ++M   G+KP+T    S
Sbjct: 308 YGKMRSVLEFMEKRFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMKHLGIKPNTVTYCS 367

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y + G   K++ +L  +E      D   +N +I+ YGR G IEKM  LF  +  ++
Sbjct: 368 LVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFLGMEGRK 427

Query: 175 LKPDVVTWTSRLAAYS 190
            KPD +T+ + + AY+
Sbjct: 428 CKPDSITFATMIQAYN 443



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 5/210 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-PDTFVIN 113
           F     +  EM  LGI  +  ++  ++  Y K     + E  +  M +SG   PD F  N
Sbjct: 202 FELIRGILAEMSYLGIECSTVTYNTIIDGYGKAKMFEEMENTLTDMIESGSSVPDLFTFN 261

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++  YG  G+ +KME+  T  +      DI T+NILI  YG+ G   KM  + + +  +
Sbjct: 262 SIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKTFNILIRSYGKAGMYGKMRSVLEFMEKR 321

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P +VT    +  + +        E F +M   G  P+  T   L+SA S    I +V
Sbjct: 322 FFSPSIVTHNIFIETFGKAGDIETMEEYFSKMKHLGIKPNTVTYCSLVSAYSKAGHIMKV 381

Query: 234 TTLVRTM-HKDMKTALPIY---FNLYGEKG 259
            +++R + + D+    P +    + YG  G
Sbjct: 382 DSILRQVENSDVILDTPFFNCVISAYGRAG 411



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 81/170 (47%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + +   ++ AY   G + K E    +    GL+ D    N ++  YG+ G + KM  V
Sbjct: 255 PDLFTFNSIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKTFNILIRSYGKAGMYGKMRSV 314

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           L  MEK  ++  I T+NI I  +G+ G IE ME  F  +    +KP+ VT+ S ++AYS+
Sbjct: 315 LEFMEKRFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMKHLGIKPNTVTYCSLVSAYSK 374

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
                +   I  ++ ++    D      +ISA      IE+++ L   M 
Sbjct: 375 AGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFLGME 424



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 60/113 (53%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +MK LGI P   ++  L++AYSK G++ K + ++ Q+  S +  DT   N +++ YGR
Sbjct: 350 FSKMKHLGIKPNTVTYCSLVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVISAYGR 409

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            G  EKM E+   ME      D  T+  +I  Y   G IE  +G+   + A R
Sbjct: 410 AGDIEKMSELFLGMEGRKCKPDSITFATMIQAYNAQGMIEAAQGMENMMIATR 462



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 12/220 (5%)

Query: 44  PNLFVF--IFSIYFSDA-----HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+LF F  I   Y S          + E + +G+   +K+  +L+ +Y K G   K   V
Sbjct: 255 PDLFTFNSIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKTFNILIRSYGKAGMYGKMRSV 314

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           +  M K    P     N  +  +G+ G  E MEE  + M+      +  TY  L++ Y +
Sbjct: 315 LEFMEKRFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMKHLGIKPNTVTYCSLVSAYSK 374

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G I K++ + + +    +  D   +   ++AY R     +  E+F  M    C PD  T
Sbjct: 375 AGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFLGMEGRKCKPDSIT 434

Query: 217 AKVLISACSSEDQIEQVTTLVRTM-----HKDMKTALPIY 251
              +I A +++  IE    +   M     +  M+   P +
Sbjct: 435 FATMIQAYNAQGMIEAAQGMENMMIATRKNSGMRDGFPTF 474



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 2/199 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSMLNLY 119
           +FE M   G+ PT+  +  L++AY K+G + K   ++ +M   S  KPD +  + ++N  
Sbjct: 137 LFEVMLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVVEMKAISECKPDVYTYSILINCC 196

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKRLKPD 178
            +L +FE +  +L  M          TYN +I+ YG+    E+ME  L   + +    PD
Sbjct: 197 IKLHRFELIRGILAEMSYLGIECSTVTYNTIIDGYGKAKMFEEMENTLTDMIESGSSVPD 256

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           + T+ S + AY  K    +  + + E    G   D  T  +LI +        ++ +++ 
Sbjct: 257 LFTFNSIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKTFNILIRSYGKAGMYGKMRSVLE 316

Query: 239 TMHKDMKTALPIYFNLYGE 257
            M K   +   +  N++ E
Sbjct: 317 FMEKRFFSPSIVTHNIFIE 335



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 9/214 (4%)

Query: 55  FSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  A  +FE + K+    P  K++  LL    K     +   +   M   GLKP   V  
Sbjct: 95  WESALKIFELLRKQHWYEPRTKTYTKLLMMLGKCRQPEEGSFLFEVMLSDGLKPTIDVYT 154

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++++ YG+ GQ +K   ++  M+  S    D+ TY+ILIN   +    E + G+   +  
Sbjct: 155 ALVSAYGKSGQLDKAFSIVVEMKAISECKPDVYTYSILINCCIKLHRFELIRGILAEMSY 214

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSE---D 228
             ++   VT+ + +  Y + K++        +MI++G   PD  T   +I A  S+   D
Sbjct: 215 LGIECSTVTYNTIIDGYGKAKMFEEMENTLTDMIESGSSVPDLFTFNSIIGAYGSKGRID 274

Query: 229 QIEQVTTLVRTM--HKDMKTALPIYFNLYGEKGV 260
           ++E+  T  + M   +D+KT   I    YG+ G+
Sbjct: 275 KMEKWYTEFQLMGLRQDIKT-FNILIRSYGKAGM 307


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 13/177 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +  A++++M + GI+P++      + A+   G + +   +  +M K  +  +  + N 
Sbjct: 155 LKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNI 214

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK--------MEGL 166
           +++ YGR+GQ E+ E ++T M +     ++ TYN LI      G++E          EGL
Sbjct: 215 LIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALIT-----GYLEAKPKRQFVVAEGL 269

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            + + A  L PDVVT+T  L AY  + L  +  ++F  M   G  P+  +   LI+A
Sbjct: 270 IEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINA 326



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 102/208 (49%), Gaps = 10/208 (4%)

Query: 43  TPNLFVF-IFSIYFSDAHAVFE------EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++ VF  F   F DA  + E      EM++L +   +  + +L+ AY + G + + EG
Sbjct: 171 SPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEG 230

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLG---QFEKMEEVLTAMEKGSYAADISTYNILIN 152
           ++ +M + G++P+    N+++  Y       QF   E ++  ME      D+ T+ +L+ 
Sbjct: 231 LMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLG 290

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            YG  G  E+ E +F  + A+ ++P+  ++T+ + AY+ ++   +    FE +   G  P
Sbjct: 291 AYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNP 350

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
              T   L+ A      +E V  + ++M
Sbjct: 351 TVETYTALLDAYRRAGDLEMVQAVWKSM 378



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  + EEM+  G+ P + +  +LL AY   G   + E V N+M   G++P+++   +
Sbjct: 263 FVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTA 322

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y      EK       + K      + TY  L++ Y R G +E ++ +++S+  + 
Sbjct: 323 LINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEG 382

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
                VT+ + L A+ ++  Y+   ++ EE  + G  PD
Sbjct: 383 CVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPD 421



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 3/186 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG---NVAKCEGVINQMHKSGLKPDTFV 111
             +A  +  EM+  GI P + ++  L+T Y +          EG+I +M  SGL PD   
Sbjct: 225 LEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVT 284

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
              +L  YG  G  E+ E+V   M+      +  +Y  LIN Y      EK    F+ + 
Sbjct: 285 FTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIR 344

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            + + P V T+T+ L AY R         +++ M   GC     T   ++ A   + + +
Sbjct: 345 KQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYK 404

Query: 232 QVTTLV 237
           +   L+
Sbjct: 405 EARDLI 410



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           +L+ +A    G++ +   +   M + G+ P   V  + +  +   G+ ++   + T MEK
Sbjct: 143 VLMNSAVKGGGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEK 202

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
            +   ++  YNILI+ YGR G +E+ EGL   +  + ++P+V T+ + +  Y   K  R+
Sbjct: 203 LNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQ 262

Query: 198 CL---EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +    + EEM  +G YPD  T  +L+ A   E   EQ   +   M
Sbjct: 263 FVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRM 308



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 77/159 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   FE +++ G+ PT++++  LL AY + G++   + V   M   G         ++L+
Sbjct: 336 AARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILD 395

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G++++  +++   +   +  D+  YN+L+N Y RGG   K   +   +      P
Sbjct: 396 AFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLP 455

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           D  T+ + +  + R +   + L+   EM++ G  PD  T
Sbjct: 456 DSFTYCTLIYGFLRVRDQTKALKYHREMMNRGQLPDPKT 494



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 73/164 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  MK  G+ P   S+  L+ AY++     K       + K G+ P      ++L+
Sbjct: 301 AEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLD 360

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  E ++ V  +M+     A   TY  +++ + + G  ++   L +    +  KP
Sbjct: 361 AYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKP 420

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           D++ +   L +Y R   + +  +I  EM  AG  PD  T   LI
Sbjct: 421 DLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPDSFTYCTLI 464



 Score = 37.0 bits (84), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  + EE K  G  P +  + +LL +Y + G   K   ++ +M  +G  PD+F   +
Sbjct: 403 YKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPDSFTYCT 462

Query: 115 MLNLYGRL 122
           +  +YG L
Sbjct: 463 L--IYGFL 468


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 90/186 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +FE M+   + P + ++  L+    K+G +      +++MH  G  P+     S
Sbjct: 345 LDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTS 404

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  Q +K   +L  ++     A++ TYNIL++   + G +   + +FQ L  K 
Sbjct: 405 LIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKG 464

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              DVVT++  +    ++ L+   L +  +M D GC PD    + +I+A   +D  ++  
Sbjct: 465 HNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAE 524

Query: 235 TLVRTM 240
            L+R M
Sbjct: 525 KLLREM 530



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 92/204 (45%), Gaps = 7/204 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  +   IY          A  +  EM    + P + +   L+    K G + + + +
Sbjct: 222 PNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSL 281

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           +  M K G+ PD F  N++++ Y  + +  K + V   M +     D+ +Y+++I+   +
Sbjct: 282 VAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSK 341

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +++   LF+ +  + + PDVV ++S +    +       L+  +EM D G  P+  T
Sbjct: 342 MKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVIT 401

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
              LI A     Q+++   L++ +
Sbjct: 402 YTSLIDALCKSHQVDKAIALLKKI 425



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 82/185 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  ++ EM    + P + ++  L+  +   G + K  G++N+M    + P+    N+++
Sbjct: 207 DAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLV 266

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+  + + ++  M K     D+ TYN L++ Y       K + +F  +    + 
Sbjct: 267 DGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVT 326

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DV +++  ++  S+ K+    +++FE M +    PD      LI       +I      
Sbjct: 327 CDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKY 386

Query: 237 VRTMH 241
           V  MH
Sbjct: 387 VDEMH 391



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 2/213 (0%)

Query: 31  HFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV 90
           H +  N++ L    N +  +  I  + A +VF ++ +LG  P + ++  L+      G V
Sbjct: 78  HGIQSNYITLNILINSYCHLRQI--NSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQV 135

Query: 91  AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150
            +     +++   G+K D     +++N   ++GQ      +L  +E      D+  YN +
Sbjct: 136 KESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTI 195

Query: 151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
           I+   +   +     L+  +  KR+ P+VVT+TS +  +       +   +  EM+    
Sbjct: 196 IDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNV 255

Query: 211 YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            P+  T   L+     E ++ +  +LV  M K+
Sbjct: 256 NPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKE 288



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 71/153 (46%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +EM   G  P + ++  L+ A  K+  V K   ++ ++   G++ + +  N +++   + 
Sbjct: 388 DEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKD 447

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G+    ++V   +    +  D+ TY+I+IN   +    ++   L   +  K   PD + +
Sbjct: 448 GRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAY 507

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
            + + A+  K +  +  ++  EMID   Y D G
Sbjct: 508 ETIINAFFEKDMNDKAEKLLREMIDCVDYKDNG 540



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 92/243 (37%), Gaps = 49/243 (20%)

Query: 38  LLLQHT-----PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           LLL HT     PNL         +DA   F  M R+   P +     +L +  KT +   
Sbjct: 17  LLLSHTHFHSLPNL---------NDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPI 67

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI- 151
              +  +M   G++ +   +N ++N Y  L Q      V   + K  Y  DI TY  LI 
Sbjct: 68  VIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIR 127

Query: 152 ------------NIYGR-------------GGFIEKMEGLFQSLPAKRL---------KP 177
                       N + R             G  I  +  + Q+ PA RL         +P
Sbjct: 128 GLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRP 187

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV + + +    + KL R   +++ EM +   +P+  T   LI       Q+++   L+
Sbjct: 188 DVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLL 247

Query: 238 RTM 240
             M
Sbjct: 248 NEM 250



 Score = 40.8 bits (94), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 63/145 (43%)

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +  + P+     S++  +  +GQ +K   +L  M   +   ++ T+N L++   + G
Sbjct: 214 EMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEG 273

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            + + + L   +  + + PDV T+ + +  Y   K   +   +F  M   G   D  +  
Sbjct: 274 KMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYS 333

Query: 219 VLISACSSEDQIEQVTTLVRTMHKD 243
           V+IS  S    +++   L   M  +
Sbjct: 334 VMISGLSKMKMLDEAMDLFEGMRNE 358


>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
 gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
          Length = 574

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 10/232 (4%)

Query: 40  LQHT---PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           +QH    P+ F +   I+        + A+ +F EM   G  P++ ++ +++  ++K G 
Sbjct: 163 MQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGK 222

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
                 + + + + G  PD      ++ + G  G  E  E+V   ME+  + AD   + +
Sbjct: 223 FDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGL 282

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +++++G+ G  EK    F  +    L+P+V    S L+AY R   Y     +   M   G
Sbjct: 283 MVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWG 342

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVA 261
            YP   T   L+S+C++     +   L   M      A P   +L    G A
Sbjct: 343 LYPTLQTYTSLLSSCAACRAAWEYDALFGLMGGTGHPAHPFVCSLLASGGTA 394



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 93/205 (45%), Gaps = 4/205 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM R G  P + ++  L+  Y +  ++     + N M   G +PD     ++++L  
Sbjct: 89  LLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQA 148

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  +   E+   M+   +  D  TY+I+I+  G+ G +     LF  +  +   P +V
Sbjct: 149 KAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLV 208

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  +++   +   L+++ ++ + G  PD  T  +++    +   IE    +   M
Sbjct: 209 TYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEM 268

Query: 241 HKDMKTAL-PIY---FNLYGEKGVA 261
            +    A  PI+    +++G+ G A
Sbjct: 269 ERAGWVADNPIFGLMVDMWGKTGNA 293



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           ++G K D     ++L + GR   F+ +  +L  M +     ++ TYN LI+ YGR   ++
Sbjct: 60  QAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLD 119

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
               LF  +     +PD VT+ + +   ++   +   +E++ +M  AG  PD  T  ++I
Sbjct: 120 SSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIII 179



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/157 (19%), Positives = 67/157 (42%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           K+ G    + ++  +L    +  +      ++++M + G +P+    N +++ YGR    
Sbjct: 59  KQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDL 118

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
           +   ++   M+      D  TY  LI++  + GF +    L++ +     +PD  T++  
Sbjct: 119 DSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSII 178

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +    +        ++F EM D G  P   T  ++I 
Sbjct: 179 IHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIID 215



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 10/161 (6%)

Query: 90  VAKCEGVINQMHKSGLKPDTFV--INSMLNLYGRLGQFEKMEEV-------LTAMEKGSY 140
           VA+  G++NQ H  G +    +  +N+ LN Y      ++ +E        + A ++  +
Sbjct: 5   VARVCGILNQ-HGWGDETVRALAGLNASLNAYQVNEILKQQKEAGVAYNFFIWARKQAGF 63

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             D+ TY  ++ I GR    + +  L   +  +  +P+VVT+   +  Y R       L+
Sbjct: 64  KHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLK 123

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +F  M   GC PD  T   LI   +     +    L R M 
Sbjct: 124 LFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQ 164


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM + G+     ++  L+    + G+    + +  +M   G+ PD    + +L+   
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ EK   V   ++K     DI TYNI+I    + G +E    LF SL  K +KP+V+
Sbjct: 477 KYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVI 536

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +T+ ++ + RK L      +F EM + G  P+ GT   LI A   +        L++ M
Sbjct: 537 IYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 596

Query: 241 H 241
            
Sbjct: 597 R 597



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 84/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++ ++M++  I   +  +  ++ A     NV     +  +M   G++P+    NS++ 
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 298

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++     +L+ M +     ++ T++ LI+ + + G + + E L+  +  + + P
Sbjct: 299 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 358

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T++S +  +           +FE MI   C+P+  T   LI       ++E+   L 
Sbjct: 359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418

Query: 238 RTMHK 242
           R M +
Sbjct: 419 REMSQ 423



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 92/191 (48%), Gaps = 6/191 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +  +M    I P + +   L+ A+ K G + + E + ++M K  + PD F  +S
Sbjct: 306 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 365

Query: 115 MLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           ++N   ++ RL + + M E++ + +      ++ TYN LI  + +   +E+   LF+ + 
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKD---CFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            + L  + VT+ + +    +        +IF++M+  G  PD  T  +L+       ++E
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482

Query: 232 QVTTLVRTMHK 242
           +   +   + K
Sbjct: 483 KALVVFEYLQK 493



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 87/188 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  +F EM   GI P + ++  L+      G  +    +++ M +  + P+    +++
Sbjct: 272 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 331

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+  + E++   M K S   DI TY+ LIN +     +++ + +F+ + +K  
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+ + +  + + K     +E+F EM   G   +  T   LI         +    
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451

Query: 236 LVRTMHKD 243
           + + M  D
Sbjct: 452 IFKKMVSD 459



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 79/188 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A A+ ++M  +   P   +   L+         ++   +I++M   G +PD F   +
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 225

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G  +    +L  MEKG   AD+  Y  +I+       +     LF  +  K 
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VVT+ S +        +     +  +MI+    P+  T   LI A   E ++ +  
Sbjct: 286 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 345

Query: 235 TLVRTMHK 242
            L   M K
Sbjct: 346 KLYDEMIK 353



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/209 (18%), Positives = 91/209 (43%), Gaps = 7/209 (3%)

Query: 39  LLQHTPNLFVF---IFSIYF----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA 91
           ++++ PN   F   I  ++     S+A A+ + M   G  P + ++  ++    K G++ 
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 237

Query: 92  KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
               ++ +M K  ++ D  +  ++++             + T M+      ++ TYN LI
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
                 G       L   +  +++ P+VVT+++ + A+ ++       ++++EMI     
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           PD  T   LI+     D++++   +   M
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFELM 386



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 78/193 (40%)

Query: 50  IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
           +  +   DA  +F EM +    P++     LL+A +K         +  +M    +  D 
Sbjct: 56  LLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDL 115

Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
           +  N ++N + R  Q      VL  M K  Y  DI T + L+N Y  G  I +   L   
Sbjct: 116 YSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQ 175

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +     +P+ VT+ + +            + + + M+  GC PD  T   +++       
Sbjct: 176 MFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 235

Query: 230 IEQVTTLVRTMHK 242
           I+   +L++ M K
Sbjct: 236 IDLALSLLKKMEK 248


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 89/186 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F +M    I P + +  +L+  + K G + + + V   M K G+KP+     S
Sbjct: 229 LKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCS 288

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  + Q  K   +   M +G    D  +YNI+IN + +   +++   LF+ +  K 
Sbjct: 289 LMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKN 348

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+VVT+TS +    +       L++ +EM D G  PD  T   ++ A     Q+++  
Sbjct: 349 IIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAI 408

Query: 235 TLVRTM 240
            L+  +
Sbjct: 409 ALLTKL 414



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 91/187 (48%), Gaps = 3/187 (1%)

Query: 58  AHAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           A A  + ++R+    + P +  +  ++ +  K   V +   + ++M   G+ PD    ++
Sbjct: 159 ARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSA 218

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +  +G+ +   ++   M   +   D+ T+NIL++ + + G +++ + +F  +  + 
Sbjct: 219 LISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQG 278

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP+VVT+ S +  Y   K   +   IF  M   G  PD  +  ++I+      ++++  
Sbjct: 279 IKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAM 338

Query: 235 TLVRTMH 241
            L + MH
Sbjct: 339 NLFKKMH 345



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 43/227 (18%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   VF  M + GI P + ++  L+  Y     V K   + N M + G+ PDT   N M+
Sbjct: 266 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMI 325

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + ++ + ++   +   M   +   ++ TY  LI+   + G I     L   +  + + 
Sbjct: 326 NGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVP 385

Query: 177 PDVVTWTSRLAAYSR-------------------------------------------KK 193
           PD++T++S L A  +                                           K 
Sbjct: 386 PDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKG 445

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           L+   L +  +M D G  PD  T +++I +   +D+ +    L+R M
Sbjct: 446 LFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREM 492



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 10/163 (6%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F++M    I P + ++  L+    K+G ++    ++++MH  G+ PD    +S+
Sbjct: 335 DEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSI 394

Query: 116 LNLYGRLGQFEKMEEVLTAME---------KGSYAADISTYNILINIYGRGGFIEKMEGL 166
           L+   +  Q +K   +LT ++         KG Y  D+  Y ++I  +   G   +   L
Sbjct: 395 LDALCKNHQVDKAIALLTKLKDQVFEDLFVKG-YNLDVYAYTVMIQGFCVKGLFNEALAL 453

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
              +      PD  T+   + +  +K       ++  EMI  G
Sbjct: 454 LSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARG 496



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/198 (17%), Positives = 87/198 (43%), Gaps = 13/198 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML- 116
           A ++  +M+  GI   + +  +L+  +S+ G       V   + K G  P+   + +++ 
Sbjct: 79  AISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIK 138

Query: 117 ------------NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
                       N   ++GQ     ++L  ++      ++  YN +I+   +   + +  
Sbjct: 139 GLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAF 198

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            L+  + ++ + PDVVT+++ ++ +      +  +++F +MI     PD  T  +L+   
Sbjct: 199 DLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGF 258

Query: 225 SSEDQIEQVTTLVRTMHK 242
             + ++++  T+   M K
Sbjct: 259 CKDGKMKEGKTVFAMMMK 276



 Score = 40.4 bits (93), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 29/165 (17%), Positives = 72/165 (43%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           S+  L+    K G       ++ ++    ++P+  + N++++   ++    +  ++ + M
Sbjct: 145 SYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 204

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
                + D+ TY+ LI+ +   G ++    LF  +  + +KPDV T+   +  + +    
Sbjct: 205 VSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKM 264

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +    +F  M+  G  P+  T   L+       Q+ +  ++  TM
Sbjct: 265 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTM 309


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM + G+     ++  L+    + G+    + +  +M   G+ PD    + +L+   
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ EK   V   ++K     DI TYNI+I    + G +E    LF SL  K +KP+V+
Sbjct: 477 KYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVI 536

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +T+ ++ + RK L      +F EM + G  PD G    LI A   +        L++ M
Sbjct: 537 IYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEM 596

Query: 241 H 241
            
Sbjct: 597 R 597



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 87/185 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++ ++M++  I   +  +  ++    K  ++     + N+M   G++PD F  NS+++
Sbjct: 239 ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLIS 298

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++     +L+ M +     ++ T++ LI+ + + G + + E L+  +  + + P
Sbjct: 299 CLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 358

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T++S +  +           +FE MI   C+P+  T   LI       ++E+   L 
Sbjct: 359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418

Query: 238 RTMHK 242
           R M +
Sbjct: 419 REMSQ 423



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 82/188 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA A+ ++M  +G  P   +   L+         ++   +++QM + G +PD     +
Sbjct: 166 ISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGA 225

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G  +    +L  MEKG   AD+  YN +I+   +   I+    LF  +  K 
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKG 285

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PDV T+ S ++       +     +   MI+    P+  T   LI A   E ++ +  
Sbjct: 286 IRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAE 345

Query: 235 TLVRTMHK 242
            L   M K
Sbjct: 346 KLYDEMIK 353



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 90/190 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA A+F +M+  GI P + ++  L++     G  +    +++ M +  + P+    +
Sbjct: 270 HIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFS 329

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + + G+  + E++   M K S   DI TY+ LIN +     +++ + +F+ + +K
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P+VVT+ + +  + + K     +E+F EM   G   +  T   LI         +  
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449

Query: 234 TTLVRTMHKD 243
             + + M  D
Sbjct: 450 QKIFKKMVSD 459



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 87/185 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A A+ ++M + G  P + ++  ++    K G++     ++ +M K  ++ D  + N++
Sbjct: 202 SEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTI 261

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +    +    +   ME      D+ TYN LI+     G       L  ++  +++
Sbjct: 262 IDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKI 321

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+++ + A+ ++       ++++EMI     PD  T   LI+     D++++   
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381

Query: 236 LVRTM 240
           +   M
Sbjct: 382 MFELM 386



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 82/204 (40%)

Query: 50  IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
           + ++   DA  +F EM +    P++     LL+A +K         +  +M    +  D 
Sbjct: 56  LLNLKLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDL 115

Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
           +  N ++N + R  Q      VL  M K  Y  DI T + L+N Y     I     L   
Sbjct: 116 YSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQ 175

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +     KPD VT+ + +            + + ++M+  GC PD  T   +++       
Sbjct: 176 MVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGD 235

Query: 230 IEQVTTLVRTMHKDMKTALPIYFN 253
           I+   +L++ M K    A  + +N
Sbjct: 236 IDLALSLLKKMEKGKIEADVVIYN 259



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 87/213 (40%), Gaps = 35/213 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +   M    I P + +   L+ A+ K G + + E + ++M K  + PD F  +S
Sbjct: 306 WSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 365

Query: 115 MLN---LYGRLGQFEKMEEVLTA--------------------------------MEKGS 139
           ++N   ++ RL + + M E++ +                                M +  
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 425

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              +  TYN LI    + G  +  + +F+ + +  + PD++T++  L    +     + L
Sbjct: 426 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL 485

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            +FE +  +   PD  T  ++I       ++E 
Sbjct: 486 VVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVED 518


>gi|302816774|ref|XP_002990065.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
 gi|300142185|gb|EFJ08888.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
          Length = 458

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 71/148 (47%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AY+K     K   V+  +H+   + D    N ++N YGR G+  +M +  T+M+ G 
Sbjct: 242 LMAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGG 301

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TY  LIN YG+ G   K+  L + +   +++PD   + S L AY R        
Sbjct: 302 VRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSID 361

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSE 227
             F  M + GC PD  T  +LI A  S+
Sbjct: 362 RYFAAMQEQGCKPDHLTYNILIQAYRSQ 389



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 45/245 (18%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++F +   I         S A  +  +M   GI P   ++ ++L AY+K+G++ K   
Sbjct: 125 SPDVFTYSLLIKSCCDCGQLSRASDLLADMTARGIQPNRVTYNIILDAYAKSGSLDKLHD 184

Query: 96  VINQMHKS--------------------------------------GLKPDTFVINSMLN 117
           +  QM +S                                         PD+  ++S++ 
Sbjct: 185 LALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQRLTTPSDGPDSLTLHSLMA 244

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +   F+KM  V+  + +  Y  D  TYNILIN YGR G   +M   F S+    ++P
Sbjct: 245 AYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGVRP 304

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+ + +  Y +  + R+   + E+M      PD      ++ A      I  +    
Sbjct: 305 DSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDRYF 364

Query: 238 RTMHK 242
             M +
Sbjct: 365 AAMQE 369



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 12/213 (5%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSM 115
           +A ++F+ M   G  P+ ++   L++AY+++  ++    V+  M+ +    PD F  + +
Sbjct: 75  EAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLL 134

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL----FQSLP 171
           +      GQ  +  ++L  M       +  TYNI+++ Y + G ++K+  L     QS P
Sbjct: 135 IKSCCDCGQLSRASDLLADMTARGIQPNRVTYNIILDAYAKSGSLDKLHDLALQMLQS-P 193

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +   +PD  +  + +  +  +   RR  E F+ +      PD  T   L++A +  +  +
Sbjct: 194 SPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQRLTTPSDGPDSLTLHSLMAAYAKAEMFD 253

Query: 232 QVTTLVRTMHK-----DMKTALPIYFNLYGEKG 259
           ++  +VR +H+     D  T   I  N YG  G
Sbjct: 254 KMHAVVRYIHRYHYQVDAVT-YNILINAYGRAG 285



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 63/140 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   HAV   + R        ++ +L+ AY + G   +       M   G++PD+    +
Sbjct: 252 FDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCT 311

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+ G   K+  +L  M       D + YN +++ Y R   I  ++  F ++  + 
Sbjct: 312 LINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDRYFAAMQEQG 371

Query: 175 LKPDVVTWTSRLAAYSRKKL 194
            KPD +T+   + AY  + L
Sbjct: 372 CKPDHLTYNILIQAYRSQGL 391



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F  MK  G+ P   ++  L+  Y K G   K   ++ QM    ++PDT + NS+L+ Y 
Sbjct: 293 TFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYR 352

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           R      ++    AM++     D  TYNILI  Y   G  +K +
Sbjct: 353 RASDISSIDRYFAAMQEQGCKPDHLTYNILIQAYRSQGLTDKAD 396



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 123 GQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           GQ+E   +V   +     Y     TY  L+ + G+    ++   LFQ++ A    P    
Sbjct: 35  GQWEAALKVFELLRSQQWYQPYAGTYIRLLEMLGKCKRPDEAASLFQTMLADGCGPSREA 94

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +T+ ++AY+R  L    +E+ + M     C PD  T  +LI +C    Q+ + + L+  M
Sbjct: 95  FTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRASDLLADM 154


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 5/192 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-----LKPDTF 110
           S A  +  +M   GI PT  ++ ++L  + ++G +        QM K G      KPD  
Sbjct: 227 SRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVV 286

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
              ++L+  G  GQ +K  +V   M +      I+TYN LI +  + G +E    +F  +
Sbjct: 287 SYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDM 346

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
             K   P+VVT+T  +          R +++ ++M   GC P+  T  VLI     E  I
Sbjct: 347 IRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDI 406

Query: 231 EQVTTLVRTMHK 242
           E+   L  TM K
Sbjct: 407 EKALHLFETMSK 418



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 5/177 (2%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P   ++  L   + +  + ++   ++ QM +SG+ P     N +L  + R GQ +   + 
Sbjct: 208 PDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDF 267

Query: 132 LTAMEK-GSY----AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
              M+K GS       D+ +Y  +++  G  G ++K   +F  +  +   P + T+ + +
Sbjct: 268 FLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALI 327

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
               +K      + +F++MI  G  P+  T  VLI       +I++   L+  M ++
Sbjct: 328 QVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKRE 384



 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
           A D+  +N L++   +     K   L ++L  +R  PD VT+ +    + R K   R L+
Sbjct: 173 AQDLPLFNSLLDALVKSRHAGKAASLVRAL-ERRFPPDAVTYNTLADGWCRVKDTSRALD 231

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           I  +M+++G  P   T  +++       Q++        M K
Sbjct: 232 ILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKK 273


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 92/190 (48%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+ F +   I       + + AH +F EM   G  P + ++ +++   +K  N      
Sbjct: 482 SPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALK 541

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M  +G +PD    + ++ + G  G  ++ E V + M++ ++  D   Y +L++++G
Sbjct: 542 LYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWG 601

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +EK    +Q++    L+P+V T  S L+A+ R         + + M++ G  P   
Sbjct: 602 KAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQ 661

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 662 TYTLLLSCCT 671



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 103/211 (48%), Gaps = 8/211 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + + ++M + G  P + ++  L+ +Y +   +     V N+M + G +PD     +
Sbjct: 396 FGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCT 455

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +   E+   M+    + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 456 LIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQG 515

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQIE 231
             P++VT+   +A  ++ + Y+  L+++ +M  AG  PD  T  +++     C   D+ E
Sbjct: 516 CVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAE 575

Query: 232 QVTTLVRTMHKDMKTALPIY---FNLYGEKG 259
            V + ++   K+     P+Y    +L+G+ G
Sbjct: 576 AVFSEMK--RKNWVPDEPVYGLLVDLWGKAG 604



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 12/222 (5%)

Query: 31  HFMLINFLLLQHT-----PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHM 78
            F  IN LL Q       PN+  +   I       Y +DA  VF EM+R+G  P   ++ 
Sbjct: 395 QFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYC 454

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
            L+  ++K G +     +  +M  +GL PDTF  + ++N  G+ G      ++   M + 
Sbjct: 455 TLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQ 514

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               ++ TYNI+I +  +    +    L++ + +   +PD VT++  +            
Sbjct: 515 GCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEA 574

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             +F EM      PD     +L+        +E+     +TM
Sbjct: 575 EAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTM 616



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 59/122 (48%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            + G   D     +M+ + GR  QF  + ++L  M K     ++ TYN LI+ YGR  ++
Sbjct: 372 RQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYL 431

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
                +F  +     +PD VT+ + +  +++       LE+++ M  AG  PD  T  V+
Sbjct: 432 NDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVI 491

Query: 221 IS 222
           I+
Sbjct: 492 IN 493


>gi|255564751|ref|XP_002523370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537458|gb|EEF39086.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 6/189 (3%)

Query: 43  TPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N  V  +SI+    +A AV  E+K  G+TP + S   L++  S+ GN  +      QM
Sbjct: 505 TWNGLVSGYSIWGHNEEALAVINEIKSSGLTPNVVSWTALISGCSQNGNYKESLEFFIQM 564

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            + G+KP++  ++S+L   G L   +K +E+     K  +  DI     L+++Y + G +
Sbjct: 565 QQEGIKPNSTTVSSLLKTCGGLSLLKKGKEIHCLSVKSGFTGDIYIATALVDMYSKSGNL 624

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           +    +F+    K L      W   +  ++   L +  + +++EM+ AG  PD  T   L
Sbjct: 625 KSAREVFKRTKNKTL----ACWNCMIMGFAIYGLGKEAISLYDEMLGAGILPDSITFTAL 680

Query: 221 ISACSSEDQ 229
           +SAC +  Q
Sbjct: 681 LSACKNSAQ 689



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 4/158 (2%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE 126
           R  + P +     LL  Y K   +A  + V + M    +       NS++  Y   G F+
Sbjct: 430 RNRLNPDLYVEASLLDMYVKNNCLATSQAVFDNMKNRNI----VAWNSLITGYAYKGLFD 485

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
             + +L  M++    ADI T+N L++ Y   G  E+   +   + +  L P+VV+WT+ +
Sbjct: 486 DAKRLLNKMKEEGIRADIVTWNGLVSGYSIWGHNEEALAVINEIKSSGLTPNVVSWTALI 545

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           +  S+   Y+  LE F +M   G  P+  T   L+  C
Sbjct: 546 SGCSQNGNYKESLEFFIQMQQEGIKPNSTTVSSLLKTC 583



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 99  QMH----KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           Q+H    K  L+ + ++ NS++++Y R G+      V  +M+      ++S++N +I+ Y
Sbjct: 287 QIHGYVIKHALESNLWISNSLISMYSRNGKIILSRRVFDSMKD----HNLSSWNSIISSY 342

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
              G++     LF  + +  +KPD++TW   L+ ++    Y+  L I ++M   G  P+ 
Sbjct: 343 TALGYLNGAWKLFHEMESSSVKPDIITWNCLLSGHALHGSYKEVLMILQKMQVTGFRPNS 402

Query: 215 GT 216
            +
Sbjct: 403 SS 404



 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/204 (17%), Positives = 78/204 (38%), Gaps = 36/204 (17%)

Query: 73  TMKSHML-----LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127
           +MK H L     ++++Y+  G +     + ++M  S +KPD    N +L+ +   G +++
Sbjct: 326 SMKDHNLSSWNSIISSYTALGYLNGAWKLFHEMESSSVKPDIITWNCLLSGHALHGSYKE 385

Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD--------- 178
           +  +L  M+   +  + S+   ++        ++  +G+   +   RL PD         
Sbjct: 386 VLMILQKMQVTGFRPNSSSITSVLQTVTELRLLKIGKGIHGYVIRNRLNPDLYVEASLLD 445

Query: 179 ----------------------VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
                                 +V W S +  Y+ K L+     +  +M + G   D  T
Sbjct: 446 MYVKNNCLATSQAVFDNMKNRNIVAWNSLITGYAYKGLFDDAKRLLNKMKEEGIRADIVT 505

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
              L+S  S     E+   ++  +
Sbjct: 506 WNGLVSGYSIWGHNEEALAVINEI 529



 Score = 37.4 bits (85), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 4/142 (2%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  S  K D   +  ML   G+     + +++   + K +  +++   N LI++Y R G 
Sbjct: 257 MQFSFAKADASTVLKMLQACGKEEALNEGKQIHGYVIKHALESNLWISNSLISMYSRNGK 316

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I     +F S+    L     +W S +++Y+         ++F EM  +   PD  T   
Sbjct: 317 IILSRRVFDSMKDHNLS----SWNSIISSYTALGYLNGAWKLFHEMESSSVKPDIITWNC 372

Query: 220 LISACSSEDQIEQVTTLVRTMH 241
           L+S  +     ++V  +++ M 
Sbjct: 373 LLSGHALHGSYKEVLMILQKMQ 394



 Score = 37.0 bits (84), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 27/145 (18%), Positives = 61/145 (42%), Gaps = 4/145 (2%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G+  +   V  ++H  G+  D+ ++  +L +  R+       EV  ++ K  +  D    
Sbjct: 144 GDPIQVLNVFKELHSKGVTFDSGMVTVVLKICIRVMDLWLGLEVHASLIKRGFELDTYVR 203

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           + L++ Y R   +E    +F  +P +    D + W   +    + + +   +E+F  M  
Sbjct: 204 SALLSYYERCWSLEIANQVFHDMPDR----DGLFWNEAIMINLKNERFGNAIELFRGMQF 259

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQ 232
           +    D  T   ++ AC  E+ + +
Sbjct: 260 SFAKADASTVLKMLQACGKEEALNE 284


>gi|302819015|ref|XP_002991179.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
 gi|300141007|gb|EFJ07723.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
          Length = 561

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 88/180 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AHA F++M   GI PT  ++  L+ AY+K  +      V+ QM ++G  P      S+++
Sbjct: 348 AHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLIS 407

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y  +    K E+ +  M++     ++ T+ IL+  Y  G  ++ M   F+++    L+P
Sbjct: 408 AYVSVNLMAKAEQTVLRMKEADLQPNLQTFCILMTGYANGNKLDNMMRSFETMKLAGLEP 467

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   +T  + AY     +   +  +++M+  GC PD     VL+    S +Q E++  L+
Sbjct: 468 NRHVYTVLVNAYGSNDDFDSAIIWYKQMLGTGCKPDPILRTVLLKIAKSHEQTEEIHELL 527



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 6/192 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS---GLKPDTFV 111
           F  A AVF+ +   G +PT +++  ++ +YS+ G +   + +   +  S    +KPD  +
Sbjct: 205 FDKAEAVFQRLLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARM 264

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N M++ YG+ G+ E+   V  +M++   A  I T+N L+         +  E +F+ L 
Sbjct: 265 YNLMIHTYGKQGKVEQAMSVYQSMKRERVALTIVTFNSLLACQKTW---KDAEDVFRKLQ 321

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           A +L PDV ++T+ + AY++ +        F++MI AG  P       LI+A +     E
Sbjct: 322 AAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPE 381

Query: 232 QVTTLVRTMHKD 243
               +++ M ++
Sbjct: 382 GARAVLKQMKQN 393



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
             +F+ M  LG+   ++ + L +  Y +  +  K E V  ++  +G  P      +M+  
Sbjct: 174 EGIFQRMAELGVAANIEMYTLQIEGYGRRRSFDKAEAVFQRLLTTGPSPTAQTYQTMMKS 233

Query: 119 Y---GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           Y   GRL   +++ +++T     +   D   YN++I+ YG+ G +E+   ++QS+  +R+
Sbjct: 234 YSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRERV 293

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              +VT+ S LA    +K ++   ++F ++  A   PD  +   L++A +   + E
Sbjct: 294 ALTIVTFNSLLAC---QKTWKDAEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAE 346



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 78/186 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  VF +++   + P + S+  L+ AY+K           + M  +G++P     N+
Sbjct: 310 WKDAEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNA 369

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y +    E    VL  M++      + +Y  LI+ Y     + K E     +    
Sbjct: 370 LINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEAD 429

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P++ T+   +  Y+        +  FE M  AG  P+     VL++A  S D  +   
Sbjct: 430 LQPNLQTFCILMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSAI 489

Query: 235 TLVRTM 240
              + M
Sbjct: 490 IWYKQM 495



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           Y + GQ +K E +   M +   AA+I  Y + I  YGR    +K E +FQ L      P 
Sbjct: 164 YCKDGQVDKTEGIFQRMAELGVAANIEMYTLQIEGYGRRRSFDKAEAVFQRLLTTGPSPT 223

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA---GCYPDGGTAKVLISACSSEDQIEQVTT 235
             T+ + + +YS          IF+ + D+      PD     ++I     + ++EQ  +
Sbjct: 224 AQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQGKVEQAMS 283

Query: 236 LVRTMHKDMKTALPIYFN 253
           + ++M ++      + FN
Sbjct: 284 VYQSMKRERVALTIVTFN 301



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/104 (20%), Positives = 54/104 (51%)

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           ME+G Y  +   Y +++  Y + G ++K EG+FQ +    +  ++  +T ++  Y R++ 
Sbjct: 145 MEQGWYNFNQKDYFLVLLAYCKDGQVDKTEGIFQRMAELGVAANIEMYTLQIEGYGRRRS 204

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           + +   +F+ ++  G  P   T + ++ + S   +++ V  + +
Sbjct: 205 FDKAEAVFQRLLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFK 248


>gi|356569072|ref|XP_003552730.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
           chloroplastic-like [Glycine max]
          Length = 509

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 1/164 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA +   +MK  GI P++ ++  ++   S+ G  +     I++M +SGL+ D+   + +L
Sbjct: 155 DALSALRDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLL 214

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG+   +++M E +  ME    + D  TYNILI  Y R G +++ME L+Q + +KR+ 
Sbjct: 215 GAYGKFQMYDEMGECVKKMELEGCSPDHITYNILIQEYARAGLLQRMEKLYQRMVSKRMH 274

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKV 219
               T  + L AY+   +  +    + +++ +  C  D    KV
Sbjct: 275 VQSSTLVAMLEAYTTFGMVEKMENFYRKILSSKTCLEDDLIRKV 318



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/153 (18%), Positives = 66/153 (43%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G +      +  M   G+KP     N +++   R G+F      +  M++     D  TY
Sbjct: 151 GKMEDALSALRDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMKESGLELDSETY 210

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           + L+  YG+    ++M    + +  +   PD +T+   +  Y+R  L +R  ++++ M+ 
Sbjct: 211 DGLLGAYGKFQMYDEMGECVKKMELEGCSPDHITYNILIQEYARAGLLQRMEKLYQRMVS 270

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              +    T   ++ A ++   +E++    R +
Sbjct: 271 KRMHVQSSTLVAMLEAYTTFGMVEKMENFYRKI 303



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 53/131 (40%)

Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
           F  N ++ L    G+ E     L  M+       + TYN +I+   R G           
Sbjct: 138 FNYNKIIGLLCEGGKMEDALSALRDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDE 197

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +    L+ D  T+   L AY + ++Y    E  ++M   GC PD  T  +LI   +    
Sbjct: 198 MKESGLELDSETYDGLLGAYGKFQMYDEMGECVKKMELEGCSPDHITYNILIQEYARAGL 257

Query: 230 IEQVTTLVRTM 240
           ++++  L + M
Sbjct: 258 LQRMEKLYQRM 268


>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
 gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
          Length = 1143

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 84/174 (48%)

Query: 48   VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            VF  S    DA  +F+++K  G  P  K +  ++  Y+K+G       +   M   GL+P
Sbjct: 906  VFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRP 965

Query: 108  DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                 N++++ Y R GQF K E++L  M K        T+ +LI+ Y   G   + E   
Sbjct: 966  HEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENAL 1025

Query: 168  QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            + +    ++P V  +   + A+SR +L  + +E + +M  +G  PD  +++ +I
Sbjct: 1026 ERMQTAAIRPTVRHYNEVMLAFSRARLPSQAMESYLKMERSGIQPDVVSSRTMI 1079



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 8/216 (3%)

Query: 46  LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           ++  + SIY     + +A  +F+EM  L +   +K+  ++     K G   +   V+ ++
Sbjct: 488 VYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEEL 547

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL-TAMEKGSYAADISTYNILINIYGRGGF 159
              GL  D     ++L+ Y + G  E+  +   T +E G   AD+  YN ++++Y     
Sbjct: 548 LAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTLVESG--IADLMAYNDMLSLYAEFDM 605

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E  + LFQ L +  ++PD V + + +  Y    +     E+  +M + G  PD  T  +
Sbjct: 606 LEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGI 665

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
           LI+A    ++IE+   L+    K+ ++       +Y
Sbjct: 666 LINAYGEANRIEEAAGLLEASAKEDESEAAAISRIY 701



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 88/185 (47%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            DA A+    +  GI   + ++  ++ A  + G + K     + +   GL+P     ++M+
Sbjct: 845  DADALIHMARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMI 904

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +++ + G+    E++   ++   +  D   Y+ ++N Y + G  E    LF+++  + L+
Sbjct: 905  SVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLR 964

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            P  V++ + + AY+R   + +  ++  EM  AGC P   T  +LISA +   +  +    
Sbjct: 965  PHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENA 1024

Query: 237  VRTMH 241
            +  M 
Sbjct: 1025 LERMQ 1029



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 38/241 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  ++E++    +  +  ++ L++T Y K G   +   V   M  +G  PD+ + N 
Sbjct: 362 LADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNM 421

Query: 115 MLNLYGRLGQFEKMEEVLTAME-------KGSYA-------------------------- 141
           +L++ G+LG++++  +V TAM+       K SYA                          
Sbjct: 422 VLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQMKR 481

Query: 142 --ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D   Y  +I+IYG+ G  ++ E LFQ +   RL  DV T++       +   Y   +
Sbjct: 482 CPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAV 541

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY---FNLYG 256
           ++ EE++  G   D    K L+        +E+ T   +T+ +     L  Y    +LY 
Sbjct: 542 QVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTLVESGIADLMAYNDMLSLYA 601

Query: 257 E 257
           E
Sbjct: 602 E 602



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 85/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E+M+++G+        +LL AYSK G V   + +I+     G+  D    N+++ 
Sbjct: 811 AAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIVAYNTIIK 870

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G+ +K  +  +++        + TY+ +I+++ + G     E +F+ L +   +P
Sbjct: 871 ADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQP 930

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D   ++  +  Y++  +Y    ++FE M   G  P   +   LI A +   Q  +   L+
Sbjct: 931 DEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLL 990

Query: 238 RTMHK 242
             M K
Sbjct: 991 VEMAK 995



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 69/152 (45%)

Query: 61   VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
             +  +  LG+ P+++++  +++ ++K+G     E +   +  +G +PD  V + M+N Y 
Sbjct: 884  TYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYA 943

Query: 121  RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            + G +E   ++  AM+         +YN LI+ Y R G   K E L   +      P  V
Sbjct: 944  KSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSV 1003

Query: 181  TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            T+   ++AY+ +          E M  A   P
Sbjct: 1004 TFLLLISAYAHRGKCNEAENALERMQTAAIRP 1035



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 70/152 (46%)

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
            + K  G++ +M + GLK D+ +++ +LN Y + G  E  + ++          DI  YN
Sbjct: 807 QLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIVAYN 866

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            +I    R G ++K    + SL    L+P + T+ + ++ +++    R   ++F+++  A
Sbjct: 867 TIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSA 926

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           G  PD      +++  +     E    L   M
Sbjct: 927 GFQPDEKVYSQMMNCYAKSGMYEHAADLFEAM 958



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 35/186 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +   ++E M   GI P+  ++  +L   +K   +A    +   + +  ++        
Sbjct: 327 FDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYAL 386

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG---------------- 158
           M+ +Y +LG+FE+  EV  AM    Y  D   YN+++++ G+ G                
Sbjct: 387 MITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQE 446

Query: 159 -------------FIEKME------GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                          EK +       +F  +  KR   D V +TS ++ Y +  LY    
Sbjct: 447 LCTSKYSYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAE 506

Query: 200 EIFEEM 205
           ++F+EM
Sbjct: 507 KLFQEM 512



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AY K G       V+ ++ K  L  + FV +SM+       Q EK   ++  M +  
Sbjct: 768 LIAAYGKAGRYE----VLTKL-KPELPRNNFVYSSMVGALINCNQLEKAAGLVEKMRQIG 822

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D    +IL+N Y + G +E  + L        +  D+V + + + A  R    ++ +
Sbjct: 823 LKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIVAYNTIIKADLRAGRLKKAI 882

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247
           + +  + + G  P   T   +IS  +   +    T     M KD+K+A
Sbjct: 883 DTYSSLTNLGLRPSLQTYDTMISVFAKSGR----TRDAEKMFKDLKSA 926



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 53/119 (44%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            F+ A  +  EM + G  P+  + +LL++AY+  G   + E  + +M  + ++P     N 
Sbjct: 983  FAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYNE 1042

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  + R     +  E    ME+     D+ +   +I I   G   E+   L++   AK
Sbjct: 1043 VMLAFSRARLPSQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFEEGLSLYKKTEAK 1101



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 55/116 (47%)

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           SY   +  Y++L+ +YGR   I   E  FQ +  ++L PD V +++ +  Y+  +++   
Sbjct: 271 SYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEM 330

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           L ++E M+  G  P   T   ++   +  +++     L   + ++     P+ + L
Sbjct: 331 LTMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYAL 386


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 83/181 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM + G+     ++  L+  + +       + V  QM   G+ PD    + +L+   
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLC 477

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+ E    V   +++     DI TYNI+I    + G +E    LF SL  K +KP+VV
Sbjct: 478 NNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVV 537

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T+ ++ + RK L      +F EM + G  PD GT   LI A   +        L+R M
Sbjct: 538 TYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597

Query: 241 H 241
            
Sbjct: 598 R 598



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 94/191 (49%), Gaps = 6/191 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +  +M    I P + +   L+ A+ K G + + E + ++M K  + PD F  +S
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 366

Query: 115 MLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           ++N   ++ RL + + M E++ + +      ++ TYN LI  + +   +++   LF+ + 
Sbjct: 367 LINGFCMHDRLDEAKHMFELMISKD---CFPNVVTYNTLIKGFCKAKRVDEGMELFREMS 423

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            + L  + VT+T+ +  + + +       +F++M+  G  PD  T  +L+    +  ++E
Sbjct: 424 QRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVE 483

Query: 232 QVTTLVRTMHK 242
               +   + +
Sbjct: 484 TALVVFEYLQR 494



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 85/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++ ++M++  I P +  +  ++ A     NV     +  +M   G++P+    NS++ 
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++     +L+ M +     ++ T++ LI+ + + G + + E L+  +  + + P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 359

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T++S +  +           +FE MI   C+P+  T   LI       ++++   L 
Sbjct: 360 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELF 419

Query: 238 RTMHK 242
           R M +
Sbjct: 420 REMSQ 424



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 88/188 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  +F EM   GI P + ++  L+      G  +    +++ M +  + P+    +++
Sbjct: 273 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 332

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+  + E++   M K S   DI TY+ LIN +     +++ + +F+ + +K  
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 392

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+ + +  + + K     +E+F EM   G   +  T   LI       + +    
Sbjct: 393 FPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQI 452

Query: 236 LVRTMHKD 243
           + + M  D
Sbjct: 453 VFKQMVSD 460



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A AV  +M +LG  P + +   LL  +     ++    ++ QM + G +PD+F  N+
Sbjct: 132 LSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNT 191

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R  +  +   ++  M       D+ TY I++N   + G I+    L + +   +
Sbjct: 192 LIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGK 251

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P VV + + + A    K     L +F EM + G  P+  T   LI    +  +    +
Sbjct: 252 IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 311

Query: 235 TLVRTM 240
            L+  M
Sbjct: 312 RLLSDM 317



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 77/188 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F +M +    P++     LL+A +K         +  QM   G+  + +  + 
Sbjct: 62  LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + R  Q      VL  M K  Y  DI T N L+N +  G  I     L   +    
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PD  T+ + +    R       + + + M+  GC PD  T  ++++       I+   
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241

Query: 235 TLVRTMHK 242
           +L++ M +
Sbjct: 242 SLLKKMEQ 249



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 83/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A A+ + M   G  P + ++ +++    K G++     ++ +M +  ++P   + N++
Sbjct: 203 SEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTI 262

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++             + T M+      ++ TYN LI      G       L   +  +++
Sbjct: 263 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 322

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+++ + A+ ++       ++++EMI     PD  T   LI+     D++++   
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 382

Query: 236 LVRTM 240
           +   M
Sbjct: 383 MFELM 387



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 77/187 (41%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA ++  +M  +G  P   +   L+    +    ++   ++++M   G +PD      +
Sbjct: 168 SDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIV 227

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   + G  +    +L  ME+G     +  YN +I+       +     LF  +  K +
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+VVT+ S +        +     +  +MI+    P+  T   LI A   E ++ +   
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347

Query: 236 LVRTMHK 242
           L   M K
Sbjct: 348 LYDEMIK 354


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 96/218 (44%), Gaps = 10/218 (4%)

Query: 23  FNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLT 82
           F Y P   HF ++  +L++H               A ++F+++   GI+P  +++ +L+ 
Sbjct: 197 FGYEPLAKHFNVLLIVLIEHK----------CLETALSLFKKLHEFGISPNTRTYNILIR 246

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
           A+  +  ++    + N+MHK G  PD    + ++    R  Q +    VL  M    Y  
Sbjct: 247 AHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVP 306

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D  TYN L+N   R   + +   L   +      PDV+ + + +  + R+       +I 
Sbjct: 307 DALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQIL 366

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +M + GC P+  + + L++   +E + ++    V  M
Sbjct: 367 RDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEM 404



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 5/204 (2%)

Query: 42  HTPNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           +TP LFV I  IY      ++A   F +M   G  P  K   +LL    +   +     +
Sbjct: 166 YTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSL 225

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             ++H+ G+ P+T   N ++  +    +      +   M K     D+ TY+IL+    R
Sbjct: 226 FKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCR 285

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              ++   G+   +  K   PD +T+ + L +  RK   R    +  +M   GC PD   
Sbjct: 286 KSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVIN 345

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
              +I+    E +      ++R M
Sbjct: 346 YNTVITGFCREGRALDACQILRDM 369



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 5/186 (2%)

Query: 58  AHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPDTFVINS 114
           A  +FE   R  G   +  ++  L+    +       EG+I QM K G    P  FV   
Sbjct: 116 AMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFV--D 173

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +YG +G   +  +    M +  Y      +N+L+ +      +E    LF+ L    
Sbjct: 174 IIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFG 233

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+  T+   + A+           +F +M   GC PD  T  +L+     + Q++   
Sbjct: 234 ISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTAL 293

Query: 235 TLVRTM 240
            ++  M
Sbjct: 294 GVLDEM 299



 Score = 40.4 bits (93), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 55/141 (39%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K      ++++   GR  QF+ ME ++  M K         +  +I IYG  G   
Sbjct: 126 QPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPN 185

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +    F  +     +P    +   L      K     L +F+++ + G  P+  T  +LI
Sbjct: 186 EAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILI 245

Query: 222 SACSSEDQIEQVTTLVRTMHK 242
            A    D++     L   MHK
Sbjct: 246 RAHCHSDKLSHAYFLFNKMHK 266


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 43  TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+F F   I F       ++A ++F  MK +G  P + +   L+  Y K G + + E 
Sbjct: 185 APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQ 244

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M +SG K D    N+++N + + G+ E       AM++    A++ T++  ++ + 
Sbjct: 245 LVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFC 304

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G + +   LF  +  + +  +  T+T  +    +       + + +EM+  G   +  
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  VL+     E ++ +   ++R M K
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEK 391



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 83/181 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  + +EM R G+   + ++ +L+    K   VA+ E V+  M K+G++ +  +  +
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +      EK   +L+ M+      DIS Y  LI        +++ + L   +    
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P+ + +T+ + A  +       + + ++++D+G  P+  T   LI        I++  
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 235 T 235
           +
Sbjct: 524 S 524



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 4/193 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+ +++   G  P + ++  L+    K G++ +     N+M   GL P+     +++
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALV 545

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G   +  ++   M     + D   Y  L++ Y + G +     L   +    L+
Sbjct: 546 DGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQ 605

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+  +T  ++ +    +     E+F EMI  G  PD      LIS       +E+  +L
Sbjct: 606 LDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISL 665

Query: 237 VRTMHKDMKTALP 249
                 +M+  LP
Sbjct: 666 ----QDEMERVLP 674



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 69/152 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EMK  G+   +  +  L+        + + + ++ +M +SGL+P+  +  +M++
Sbjct: 417 ALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMD 476

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+  +   +L  +    +  ++ TY  LI+   + G I++    F  +    L P
Sbjct: 477 ACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDP 536

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +V  +T+ +    +       +++F EM+  G
Sbjct: 537 NVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568



 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/200 (17%), Positives = 82/200 (41%), Gaps = 1/200 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  V   M++ G+      +  L+  +    N  K  G++++M   GL+ D  +  ++
Sbjct: 380 AEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGAL 439

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +     + + ++ + +LT M++     +   Y  +++   + G + +   + Q +     
Sbjct: 440 IQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGF 499

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+V+T+ + +    +       +  F +M D G  P+      L+        + +   
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 236 LVRTM-HKDMKTALPIYFNL 254
           L   M HK M     +Y  L
Sbjct: 560 LFNEMVHKGMSLDKVVYTAL 579



 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +F EM   G++     +  LL  Y K GN+     +  +M  SGL+ D F    
Sbjct: 554 LNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTC 613

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            ++ +  L    +  EV + M     A D + YN LI+ Y + G +E+
Sbjct: 614 FISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEE 661



 Score = 37.0 bits (84), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 31/184 (16%), Positives = 77/184 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M+  G+     ++  L+    K G +     ++++M + G+  +      ++
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  +  + E+VL  MEK    A+   Y  LI+ +      EK  GL   +  K L+
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+  + + +              +  +M ++G  P+      ++ AC    ++ +   +
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 237 VRTM 240
           ++ +
Sbjct: 491 LQKI 494


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 43  TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+F F   I F       ++A ++F  MK +G  P + +   L+  Y K G + + E 
Sbjct: 185 APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQ 244

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M +SG K D    N+++N + + G+ E       AM++    A++ T++  ++ + 
Sbjct: 245 LVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFC 304

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G + +   LF  +  + +  +  T+T  +    +       + + +EM+  G   +  
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  VL+     E ++ +   ++R M K
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEK 391



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 83/181 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  + +EM R G+   + ++ +L+    K   VA+ E V+  M K+G++ +  +  +
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +      EK   +L+ M+      DIS Y  LI        +++ + L   +    
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P+ + +T+ + A  +       + + ++++D+G  P+  T   LI        I++  
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 235 T 235
           +
Sbjct: 524 S 524



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 4/193 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+ +++   G  P + ++  L+    K G++ +     N+M   GL P+     +++
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALV 545

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G   +  ++   M     + D   Y  L++ Y + G +     L   +    L+
Sbjct: 546 DGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQ 605

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+  +T  ++ +    +     E+F EMI  G  PD      LIS       +E+  +L
Sbjct: 606 LDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISL 665

Query: 237 VRTMHKDMKTALP 249
                 +M+  LP
Sbjct: 666 ----QDEMERVLP 674



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 69/152 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EMK  G+   +  +  L+        + + + ++ +M +SGL+P+  +  +M++
Sbjct: 417 ALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMD 476

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+  +   +L  +    +  ++ TY  LI+   + G I++    F  +    L P
Sbjct: 477 ACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDP 536

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +V  +T+ +    +       +++F EM+  G
Sbjct: 537 NVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/200 (17%), Positives = 82/200 (41%), Gaps = 1/200 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  V   M++ G+      +  L+  +    N  K  G++++M   GL+ D  +  ++
Sbjct: 380 AEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGAL 439

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +     + + ++ + +LT M++     +   Y  +++   + G + +   + Q +     
Sbjct: 440 IQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGF 499

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+V+T+ + +    +       +  F +M D G  P+      L+        + +   
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 236 LVRTM-HKDMKTALPIYFNL 254
           L   M HK M     +Y  L
Sbjct: 560 LFNEMVHKGMSLDKVVYTAL 579



 Score = 43.9 bits (102), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +F EM   G++     +  LL  Y K GN+     +  +M  SGL+ D F    
Sbjct: 554 LNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTC 613

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            ++ +  L    +  EV + M     A D + YN LI+ Y + G +E+
Sbjct: 614 FISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEE 661



 Score = 37.0 bits (84), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 31/184 (16%), Positives = 77/184 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M+  G+     ++  L+    K G +     ++++M + G+  +      ++
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  +  + E+VL  MEK    A+   Y  LI+ +      EK  GL   +  K L+
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+  + + +              +  +M ++G  P+      ++ AC    ++ +   +
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 237 VRTM 240
           ++ +
Sbjct: 491 LQKI 494


>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Brachypodium distachyon]
          Length = 684

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 87/199 (43%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+ +     A  + +EM+  G+ P + +   L++ YSK GNV   + V+  + + GL PD
Sbjct: 431 FVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPD 490

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
                S++N      Q +   +    M +     +  TYN+L++     G + K   L  
Sbjct: 491 IITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLN 550

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +    + PD  ++ + + ++ R K   +   IF  M+  G  PD  T   LI A   E 
Sbjct: 551 KMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDER 610

Query: 229 QIEQVTTLVRTMHKDMKTA 247
           +I++   ++  M     +A
Sbjct: 611 RIDEAKEILLLMESSGSSA 629



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 87/201 (43%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +  SD   + ++  + G  P    +++++ +     + +K    + +M   GL       
Sbjct: 365 LELSDLCGLLDDFVKKGGNPGFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTSY 424

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +++ + + G  +K  E++  M +     ++ T+N LI+ Y + G +   + + + L  
Sbjct: 425 NMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLME 484

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             L PD++T+TS +             + F EM + G  P+  T  VL+ A  S   + +
Sbjct: 485 HGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNK 544

Query: 233 VTTLVRTMHKDMKTALPIYFN 253
              L+  M KD  T     FN
Sbjct: 545 AIDLLNKMKKDGITPDAYSFN 565



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH VF +M RLG+ P+   +  L+ A  + G V        QM   G +PD F  N++++
Sbjct: 160 AHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVH 219

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  ++   ++  ME      ++ TY +L++ +   G  E    +F ++  K + P
Sbjct: 220 GVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSP 279

Query: 178 DVVTWTS 184
           +  ++ +
Sbjct: 280 NEASYRT 286



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 67/161 (41%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L  A  + G       ++ ++   G +    ++ +++  +GRLG  +   EV   M +  
Sbjct: 112 LEDALWRRGPAVLSAALVAEVRGCGCEVSEELLRALIASWGRLGLAQYAHEVFVQMPRLG 171

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                + YN LI    R G ++     FQ +PA   +PD  T+ + +    ++ +    L
Sbjct: 172 LRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEAL 231

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +  +M  AG  P+  T  +L+    +  + E    +  TM
Sbjct: 232 RLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTM 272



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 70/162 (43%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+  E++  G   + +    L+ ++ + G       V  QM + GL+P T V N+++   
Sbjct: 127 ALVAEVRGCGCEVSEELLRALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVAS 186

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            R G  +        M       D  TYN L++   + G I++   L + +    ++P+V
Sbjct: 187 VRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNV 246

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            T+T  +  +         + +F+ M + G  P+  + + L+
Sbjct: 247 FTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLV 288


>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
          Length = 762

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 103/217 (47%), Gaps = 3/217 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     + +EM  +   PT+ ++  ++ AY +   + +   V  +M K+G +PD     +
Sbjct: 382 FGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCT 441

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  E   ++ T M++   + D  TY+ ++N  G+GG +     LF  +    
Sbjct: 442 LIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENG 501

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +A  ++ + Y   ++++++M  AG  PD  T  +++        +++  
Sbjct: 502 CTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAE 561

Query: 235 TLVRTMHKDMKTALPIY---FNLYGEKGVARSNLGQY 268
            +   M  D     P+Y    +L+G+ G     LG Y
Sbjct: 562 AVFIEMRHDWAPDEPVYGLLVDLWGKAGNVDKALGWY 598



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 86/172 (50%), Gaps = 1/172 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + + A+ +F EM   G TP + ++ +++   +K  N      +   M  +G +PD    +
Sbjct: 486 HLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYS 545

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++ + G  G  ++ E V   M +  +A D   Y +L++++G+ G ++K  G + ++   
Sbjct: 546 IVMEVLGHCGHLDEAEAVFIEM-RHDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQD 604

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            L+P+V T  S L+A+ +   ++    + + M+  G  P   T  +L+S C+
Sbjct: 605 GLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCT 656



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  VFEEM++ G  P   ++  L+  ++K G +     +  +M + GL PDTF  +
Sbjct: 416 YLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYS 475

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M+N  G+ G      ++   M +     ++ TYNI+I +  +    E +  L++ +   
Sbjct: 476 AMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVA 535

Query: 174 RLKPDVVTWT 183
             +PD +T++
Sbjct: 536 GFRPDKITYS 545



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 58/121 (47%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+ + G+  QF  M ++L  M        + TYN +I+ YGR  ++ 
Sbjct: 359 QPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLR 418

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F+ +     +PD VT+ + +  +++       ++++  M + G  PD  T   ++
Sbjct: 419 EAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMV 478

Query: 222 S 222
           +
Sbjct: 479 N 479



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGR----LGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           V++ +H    K D F  N +L L       LG F+ ++       +  +  D  +Y  +I
Sbjct: 323 VLDNLH---CKIDAFQANQVLKLLHDHTIALGFFQWLKR------QPGFKHDGHSYTTMI 373

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
            I G+      M  L   + +   KP VVT+   + AY R    R  +++FEEM  AG  
Sbjct: 374 GILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYE 433

Query: 212 PDGGTAKVLI 221
           PD  T   LI
Sbjct: 434 PDRVTYCTLI 443


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 91/183 (49%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A+ +  EM ++G+ P + ++  ++    K+GN+ +   ++ +   +GL  DT    ++++
Sbjct: 898  ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 957

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             Y + G+ +K +E+LT M        I T+N+L+N +   G +E  E L   + AK + P
Sbjct: 958  AYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 1017

Query: 178  DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            +  T+   +  Y  +   +    I+++M   G  PDG T + L+    +   +++   L 
Sbjct: 1018 NATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLF 1077

Query: 238  RTM 240
            + M
Sbjct: 1078 QEM 1080



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 7/220 (3%)

Query: 30  SHFMLINFLLLQHTPNLFVFIFSI----YFSDAHAVF---EEMKRLGITPTMKSHMLLLT 82
           +H +L+   L  +TP++  +   I     F +   V+   E+MK+ G+ P   ++  ++ 
Sbjct: 688 AHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIG 747

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
              +   +A+ E   ++M   G+ PDT V  ++++ + + G      +    M       
Sbjct: 748 LLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITP 807

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+ TY  +I+ + + G + +   LF  +  + L+PD++T+T  +  Y +    +    + 
Sbjct: 808 DVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVH 867

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             MI AGC P+  T   LI     E  ++    L+  M K
Sbjct: 868 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 907



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 87/187 (46%)

Query: 54   YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            +  DA  V   M + G +P + ++  L+    K G++     ++++M K GL+P+ F  N
Sbjct: 859  HIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 918

Query: 114  SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            S++N   + G  E+  +++   E     AD  TY  L++ Y + G ++K + +   +  K
Sbjct: 919  SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGK 978

Query: 174  RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             L+P +VT+   +  +    +     ++   M+  G  P+  T   L+      + ++  
Sbjct: 979  GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAA 1038

Query: 234  TTLVRTM 240
            T + + M
Sbjct: 1039 TAIYKDM 1045



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 90/209 (43%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +A  +F EM   G+ P + +   L+  Y K G++     V N M ++G  P+     +++
Sbjct: 827  EAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLI 886

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +   + G  +   E+L  M K     +I TYN ++N   + G IE+   L     A  L 
Sbjct: 887  DGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN 946

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             D VT+T+ + AY +     +  EI  EM+  G  P   T  VL++       +E    L
Sbjct: 947  ADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKL 1006

Query: 237  VRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            +  M           FN   ++   R+NL
Sbjct: 1007 LNWMLAKGIAPNATTFNCLVKQYCIRNNL 1035



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 15/246 (6%)

Query: 10  DLCVAQRAPHS-WNFNYLPYPSHFMLINFLLLQHT-------PNLFVFIFSIY-----FS 56
           DL VAQ    S W    L     F+   F LL +T       P +F   F +        
Sbjct: 557 DLKVAQSLISSFWERPKLNVTESFVQF-FDLLVYTYKDWGSDPRVFDVFFQVLVEFGMLP 615

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN-VAKCEGVINQMHKSGLKPDTFVINSM 115
           +A  VFE+M   G+  ++ S  + L   SK  N  A    V  +  + G+  +    N +
Sbjct: 616 EARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIV 675

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +LG+  +   +L  ME   Y  D+ +Y+ +IN Y R G ++K+  L + +  K L
Sbjct: 676 IHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGL 735

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+  T+ S +    R        E F EMI  G  PD      L+        I   + 
Sbjct: 736 KPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASK 795

Query: 236 LVRTMH 241
               MH
Sbjct: 796 FFYEMH 801



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 88/201 (43%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +A  +  E +  G+     ++  L+ AY K+G + K + ++ +M   GL+P     N ++
Sbjct: 932  EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLM 991

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            N +   G  E  E++L  M     A + +T+N L+  Y     ++    +++ + ++ ++
Sbjct: 992  NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVE 1051

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            PD  T+ + +  +   +  +    +F+EM   G      T  VLI       +  +   +
Sbjct: 1052 PDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREI 1111

Query: 237  VRTMHKDMKTALPIYFNLYGE 257
               M +D   A    F+ + +
Sbjct: 1112 FDQMRRDGLAADKEIFDFFSD 1132



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 76/183 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A   F EM   GI P    +  L+  + K G++        +MH   + PD     +
Sbjct: 755 LAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 814

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + ++G   +  ++   M       DI T+  L+N Y + G I+    +   +    
Sbjct: 815 IISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAG 874

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+VVT+T+ +    ++       E+  EM   G  P+  T   +++       IE+  
Sbjct: 875 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 934

Query: 235 TLV 237
            LV
Sbjct: 935 KLV 937



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 1/175 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF E   +G+   + S+ +++    + G + +   ++  M   G  PD    ++++N
Sbjct: 653 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVIN 712

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G+ +K+ +++  M++     +  TY  +I +  R   + + E  F  +  + + P
Sbjct: 713 GYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILP 772

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
           D + +T+ +  + ++   R   + F EM      PD  T   +IS  C   D +E
Sbjct: 773 DTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 827


>gi|302816115|ref|XP_002989737.1| hypothetical protein SELMODRAFT_41599 [Selaginella moellendorffii]
 gi|300142514|gb|EFJ09214.1| hypothetical protein SELMODRAFT_41599 [Selaginella moellendorffii]
          Length = 483

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 101/181 (55%), Gaps = 9/181 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVIN 113
            S+A + F+++ R   + T+ S   +LTAY++  +  +   ++  M   G+ KPD   + 
Sbjct: 226 VSEAKSAFDQISR-KTSRTLVSWNAMLTAYAQNKHGRQALSLLAAMDSEGVTKPDRVTLI 284

Query: 114 SMLNLYGRLGQFEKMEEVLTAM-EKGSYA--ADISTYNILINIYGRGGFIEKMEGLFQSL 170
           + LN    +G   + +E+  A+ E+ SY   AD+S    L+N+YGR G +E+   LF+++
Sbjct: 285 TALNACADVGALAQGKELHQAVDEEMSYKHRADVSVATALLNMYGRCGSVEQARRLFEAM 344

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           P    + D+V+WT+ ++AY+R +  +  L++F  M   G  P+  +   ++SACS+   +
Sbjct: 345 P----RHDIVSWTAIVSAYARCRQAKVSLQLFRAMELEGMLPNEISFVSIVSACSAASLV 400

Query: 231 E 231
           E
Sbjct: 401 E 401



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 14/223 (6%)

Query: 50  IFSIYFSDAHAVFEEMKRLGITPT--MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           + + Y SD   + E ++ L + P   + +   ++TA ++ G+ A   G+ + M   G++P
Sbjct: 3   MVAAYSSDGR-IVEAIQILEVMPQHGIVAWNAIITACARLGHCATALGMFHDMELQGVEP 61

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTA------MEKGSYAADISTYNILINIYGRGGFIE 161
           D   + ++ +      + E  EE ++A           +  D      L+ +YGR   + 
Sbjct: 62  DRVTMLAVSDACASSLEKESHEETMSASVDQVAARMKGFLPDTVVATALVRMYGRCHRVA 121

Query: 162 KMEGLFQSLPAKRLKP--DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           + E +F+ +  K + P    V+W S ++  S+    R  L++F  M+  G   D G    
Sbjct: 122 EAESVFRDIANKSIMPQRSRVSWNSIVSGLSQNGRGREALQVFRVMVLEGVEADTGCFAS 181

Query: 220 LISACSSEDQIEQVTTLVR--TMHKDMKTALPI-YFNLYGEKG 259
           ++ AC+  + +EQ + + +  T   D  T +     N+YG+ G
Sbjct: 182 VLGACADMEDLEQGSLVHQEITSTTDGNTLIATAVVNMYGKCG 224


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 87/178 (48%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           FI S    DA  +FE M+  G+ P + S   ++  Y + G +++    ++ M K G  PD
Sbjct: 494 FIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPD 553

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            F   ++++ Y + G        L  M K     ++ TY+ LIN Y + G  +  EGLF 
Sbjct: 554 EFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFA 613

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           ++ A+ L P+VVT+T  + +  +K    R    FE M+   C P+  T   L++  +S
Sbjct: 614 NMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTS 671



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 79/184 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +++EM          S  +L+      G V +   +I     +G  P     N 
Sbjct: 185 WDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNV 244

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G   +   +L  ME   +   + TY  LIN  G+ G +EK+  LF  +  + 
Sbjct: 245 LIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRG 304

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+V  + S + A  +     + + I ++M  +GC PD  T   LI+    E  + +  
Sbjct: 305 LSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAE 364

Query: 235 TLVR 238
             +R
Sbjct: 365 HFLR 368



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  G  PT+ ++  L+    K G++ K   +  +M K GL P+  + NS+++   +  
Sbjct: 264 EMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCW 323

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
              +   +L  M       DI T+N LI      G + K E   +    + L P+ +++T
Sbjct: 324 SATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYT 383

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
             +  +  +       ++  EM+  G  PD  T   LI
Sbjct: 384 PLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALI 421



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 90/204 (44%), Gaps = 8/204 (3%)

Query: 33  MLINFLLLQHTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L+  +   HTP++  F       + +   S+A  V E+M    + P +  + +L++   
Sbjct: 401 LLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLC 460

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K   +   + ++ +M +  ++PD FV  ++++ + R        ++   ME      DI 
Sbjct: 461 KKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIV 520

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           + N +I  Y + G + +      ++      PD  T+T+ ++ Y+++      L    +M
Sbjct: 521 SCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDM 580

Query: 206 IDAGCYPDGGTAKVLISA-CSSED 228
           I   C P+  T   LI+  C + D
Sbjct: 581 IKRKCKPNVVTYSSLINGYCKTGD 604



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 4/210 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++F EM++ G++P ++ +  ++ A  K  +  +   ++ QM  SG  PD    N+++   
Sbjct: 295 SLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGL 354

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
              G   K E  L    +     +  +Y  LI+ +   G +     L   +  +   PDV
Sbjct: 355 CHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDV 414

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+ + +            L + E+M +   +PD     VLIS    +  +     ++  
Sbjct: 415 VTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEE 474

Query: 240 M-HKDMKTALPIYFNLYGEKGVARS-NLGQ 267
           M  K+++    +Y  L    G  RS NLG 
Sbjct: 475 MLEKNVQPDEFVYATLI--DGFIRSENLGD 502



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 75/184 (40%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L +TP +  F        A  +  EM   G TP + +   L+      G V++   V  +
Sbjct: 380 LSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREK 439

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  + PD  + N +++   +       + +L  M + +   D   Y  LI+ + R   
Sbjct: 440 MTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSEN 499

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +     +F+ +  K ++PD+V+  + +  Y +  +    +     M   GC PD  T   
Sbjct: 500 LGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTT 559

Query: 220 LISA 223
           +IS 
Sbjct: 560 VISG 563



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/158 (18%), Positives = 68/158 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           + A  + ++M   G  P + +   L+T     G+V K E  + +  +  L P+      +
Sbjct: 326 TQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPL 385

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ +   G+     ++L  M    +  D+ T+  LI+     G + +   + + +  +++
Sbjct: 386 IHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 445

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            PDV  +   ++   +K +      I EEM++    PD
Sbjct: 446 FPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPD 483



 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/168 (18%), Positives = 67/168 (39%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A     E  R  + P   S+  L+  +   G +     ++ +M   G  PD     
Sbjct: 359 HVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFG 418

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++     G+  +   V   M +     D++ YN+LI+   +   +   + + + +  K
Sbjct: 419 ALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEK 478

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            ++PD   + + +  + R +      +IFE M   G  PD  +   +I
Sbjct: 479 NVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMI 526



 Score = 41.6 bits (96), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 81/213 (38%), Gaps = 1/213 (0%)

Query: 31  HFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV 90
           H  L +   L H+  L +   S  F       + M   G  PT      L+ AY+  G +
Sbjct: 90  HVALQDPTPLAHSTLLRLLARSRRFDAVDDTLQSMSLAGAAPTRACLGALVAAYADAGML 149

Query: 91  AKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
            K   +  ++ +  G  P+    N +L L     +++   ++   M      AD  +  +
Sbjct: 150 GKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCV 209

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           L+      G +E+   L ++       P VV +   +  Y R+    R L +  EM   G
Sbjct: 210 LVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKG 269

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             P   T   LI+    +  +E++ +L   M K
Sbjct: 270 FLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRK 302


>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Vitis vinifera]
 gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 78/138 (56%), Gaps = 1/138 (0%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           F++  +   EM R G   P + +    L A+  +G +   E    +   +G++P+    N
Sbjct: 260 FAEMESTLLEMLREGKCEPDVWTMNSTLRAFGSSGQIETMEKCYEKFQSAGIEPNIKTFN 319

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L+ YG+  ++EKM  V+  M+K  ++  I TYN++I+ +GR G +++ME LF+ + ++
Sbjct: 320 ILLDSYGKAEKYEKMSAVMEYMQKYHFSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSE 379

Query: 174 RLKPDVVTWTSRLAAYSR 191
           R+KP  VT  S + AY R
Sbjct: 380 RIKPSCVTLCSLVRAYGR 397



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 73/135 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +    AV E M++   + T+ ++ +++ A+ + G++ + E +   M    +KP    + S
Sbjct: 331 YEKMSAVMEYMQKYHFSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 390

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  YGR G+ EK+  VL  +E      DI  +N L++ YGR G   +M+G+ + +  K 
Sbjct: 391 LVRAYGRAGKAEKIGGVLRFIENSDVMLDIVFFNCLVDAYGRLGCFAEMKGVLEMMKKKG 450

Query: 175 LKPDVVTWTSRLAAY 189
            KPD +T+ + + AY
Sbjct: 451 CKPDKITYRTMIKAY 465



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 1/202 (0%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFV 111
           + F     +  +M   GI P   ++  L+ AY K    A+ E  + +M + G  +PD + 
Sbjct: 223 VAFDKVPVLLSDMANQGIKPNTVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWT 282

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +NS L  +G  GQ E ME+     +      +I T+NIL++ YG+    EKM  + + + 
Sbjct: 283 MNSTLRAFGSSGQIETMEKCYEKFQSAGIEPNIKTFNILLDSYGKAEKYEKMSAVMEYMQ 342

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
                  +VT+   + A+ R    ++   +F  M      P   T   L+ A     + E
Sbjct: 343 KYHFSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGRAGKAE 402

Query: 232 QVTTLVRTMHKDMKTALPIYFN 253
           ++  ++R +         ++FN
Sbjct: 403 KIGGVLRFIENSDVMLDIVFFN 424



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 71/162 (43%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +E+ +  GI P +K+  +LL +Y K     K   V+  M K          N +++ +GR
Sbjct: 303 YEKFQSAGIEPNIKTFNILLDSYGKAEKYEKMSAVMEYMQKYHFSWTIVTYNVVIDAFGR 362

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++ME +   M          T   L+  YGR G  EK+ G+ + +    +  D+V 
Sbjct: 363 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVLRFIENSDVMLDIVF 422

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +   + AY R   +     + E M   GC PD  T + +I A
Sbjct: 423 FNCLVDAYGRLGCFAEMKGVLEMMKKKGCKPDKITYRTMIKA 464



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 2/204 (0%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           +T  L  +  S  F  A ++ E+MK      P + ++ +L+ +  +     K   +++ M
Sbjct: 176 YTALLSAYSRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLLSDM 235

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGF 159
              G+KP+T   N++++ YG+  +F +ME  L  M  +G    D+ T N  +  +G  G 
Sbjct: 236 ANQGIKPNTVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRAFGSSGQ 295

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           IE ME  ++   +  ++P++ T+   L +Y + + Y +   + E M          T  V
Sbjct: 296 IETMEKCYEKFQSAGIEPNIKTFNILLDSYGKAEKYEKMSAVMEYMQKYHFSWTIVTYNV 355

Query: 220 LISACSSEDQIEQVTTLVRTMHKD 243
           +I A      ++Q+  L R M  +
Sbjct: 356 VIDAFGRAGDLKQMEYLFRLMRSE 379



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  M+   I P+  +   L+ AY + G   K  GV+  +  S +  D    N +++ YG
Sbjct: 372 LFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVLRFIENSDVMLDIVFFNCLVDAYG 431

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI---EKMEGLFQSLPAKRL-- 175
           RLG F +M+ VL  M+K     D  TY  +I  Y  GG     ++++GL +     RL  
Sbjct: 432 RLGCFAEMKGVLEMMKKKGCKPDKITYRTMIKAYKIGGMTSCAKELQGLMRMPDETRLEM 491

Query: 176 -KPD 178
            KPD
Sbjct: 492 GKPD 495



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 3/185 (1%)

Query: 50  IFSIYFSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           I ++ +  A  VFE ++ +L   P    ++ L+    K     K   +   M   G   +
Sbjct: 113 ITALRWESALKVFELLREQLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVN 172

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLF 167
                ++L+ Y R G F+K   +L  M+       D+ TY++LI    +    +K+  L 
Sbjct: 173 HEAYTALLSAYSRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLL 232

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSS 226
             +  + +KP+ VT+ + + AY + K +        EM+  G C PD  T    + A  S
Sbjct: 233 SDMANQGIKPNTVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRAFGS 292

Query: 227 EDQIE 231
             QIE
Sbjct: 293 SGQIE 297



 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y  +   Y  LI + G+    EK   LF ++  +    +   +T+ L+AYSR  L+ +  
Sbjct: 134 YRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALLSAYSRSGLFDKAF 193

Query: 200 EIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + E+M +   C PD  T  VLI +C      ++V  L+  M
Sbjct: 194 SLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLLSDM 235


>gi|326522967|dbj|BAJ88529.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 62  FEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           F++MK +    P + ++ +LL A ++  +  + + +   + +S + PD +  N +++ YG
Sbjct: 184 FDKMKGMERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVIDGYG 243

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G   +ME VL  M+      D+ T+NILI+ YGR    +KME +F+SL   + +P   
Sbjct: 244 KNGMITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHP 303

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           T+ S +  Y + +L  +   + E+M + G  P+  T + LI+
Sbjct: 304 TFNSMITNYGKARLREKAESVIEKMQELGFKPNYVTQECLIN 345



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 74/148 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+++    ++P + ++  ++  Y K G + + E V+ +M     +PD    N +++ YG
Sbjct: 219 LFKDLDESIVSPDIYTYNGVIDGYGKNGMITEMESVLVRMKSKQCRPDVITFNILIDSYG 278

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R   F+KME+V  ++ +        T+N +I  YG+    EK E + + +     KP+ V
Sbjct: 279 RKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLREKAESVIEKMQELGFKPNYV 338

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           T    +  Y+      +  +IF+E++ +
Sbjct: 339 TQECLINMYAYCDCVSKAQQIFDELVSS 366



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 40/203 (19%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML--NLYGR---------LGQFEKM 128
           L++   + G +     + +QM  SG KPDT V NS++  +L+ R         LG F+KM
Sbjct: 128 LISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALVKALGYFDKM 187

Query: 129 EE-------------VLTAMEKGS----------------YAADISTYNILINIYGRGGF 159
           +              +L A  + S                 + DI TYN +I+ YG+ G 
Sbjct: 188 KGMERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVIDGYGKNGM 247

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I +ME +   + +K+ +PDV+T+   + +Y RK+ + +  ++F+ ++ +   P   T   
Sbjct: 248 ITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNS 307

Query: 220 LISACSSEDQIEQVTTLVRTMHK 242
           +I+        E+  +++  M +
Sbjct: 308 MITNYGKARLREKAESVIEKMQE 330



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++  +V   MK     P + +  +L+ +Y +     K E V   + +S  +P     NS
Sbjct: 248 ITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNS 307

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+  YG+    EK E V+  M++  +  +  T   LIN+Y     + K + +F  L + +
Sbjct: 308 MITNYGKARLREKAESVIEKMQELGFKPNYVTQECLINMYAYCDCVSKAQQIFDELVSSQ 367

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
               + +  + L AY   +L      + +  I+ G  P   T K+L  A +  +    V 
Sbjct: 368 STVPLSSLNAMLDAYCMNRLPMEADRLLDTAIEKGVVPSASTYKLLYRAYTRANDKMLVQ 427

Query: 235 TLVRTMHK 242
            L++ M+K
Sbjct: 428 KLLQRMNK 435



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 7/188 (3%)

Query: 33  MLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L+     Q  P++  F   I        F     VF+ + R    PT  +   ++T Y 
Sbjct: 254 VLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYG 313

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K     K E VI +M + G KP+      ++N+Y       K +++   +        +S
Sbjct: 314 KARLREKAESVIEKMQELGFKPNYVTQECLINMYAYCDCVSKAQQIFDELVSSQSTVPLS 373

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           + N +++ Y       + + L  +   K + P   T+     AY+R        ++ + M
Sbjct: 374 SLNAMLDAYCMNRLPMEADRLLDTAIEKGVVPSASTYKLLYRAYTRANDKMLVQKLLQRM 433

Query: 206 IDAGCYPD 213
              G  P+
Sbjct: 434 NKQGIVPN 441



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 120 GRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           GR   + +  E+   M+K   Y AD   Y+ LI++ GR G I     LF  +     KPD
Sbjct: 97  GRRDGWVQCLEIFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPD 156

Query: 179 VVTWTSRLAAY----SRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQV 233
              + S + A+     + K   + L  F++M     C P+  T  +L+ AC+     +QV
Sbjct: 157 TSVYNSLIGAHLHSRDKSKALVKALGYFDKMKGMERCQPNIVTYNILLRACARASDTKQV 216

Query: 234 TTLVRTMHKDM 244
             L + + + +
Sbjct: 217 DILFKDLDESI 227



 Score = 40.4 bits (93), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 23/167 (13%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI--NIYGRG-------- 157
           D  + + ++++ GR GQ      + + M       D S YN LI  +++ R         
Sbjct: 121 DNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALVKA 180

Query: 158 -GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G+ +KM+G+      +R +P++VT+   L A +R    ++   +F+++ ++   PD  T
Sbjct: 181 LGYFDKMKGM------ERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYT 234

Query: 217 AKVLISACSSEDQI-EQVTTLVRTMHKDMKTALPIYFNL----YGEK 258
              +I        I E  + LVR   K  +  + I FN+    YG K
Sbjct: 235 YNGVIDGYGKNGMITEMESVLVRMKSKQCRPDV-ITFNILIDSYGRK 280


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 89/186 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VF EM + GI P + +   L+    K GN+     ++ QM + GL+ +     +++
Sbjct: 273 EALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALI 332

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G  +     +  M +      +  YN LIN Y   G +++   L   + AK LK
Sbjct: 333 DGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK 392

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+++ ++AY +        E+ ++M++ G  PD  T   LI     E ++     L
Sbjct: 393 PDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVL 452

Query: 237 VRTMHK 242
            + M K
Sbjct: 453 FKNMIK 458



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 84/188 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A   F+ M   G+ P + ++ +L+ A    G+  +   ++  M  +G  P+    N+
Sbjct: 131 LTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNT 190

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R G+ +  E ++  M  G    ++ T+N ++N   + G +E    +F  +  + 
Sbjct: 191 LVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREG 250

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD V++ + +  Y +       L +F EM   G  PD  T   LI        +E   
Sbjct: 251 LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAV 310

Query: 235 TLVRTMHK 242
           TLVR M +
Sbjct: 311 TLVRQMRE 318



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 7/207 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN++ +   I       +  +A ++  +M+  G  P + ++  L+ A+ + G V   E 
Sbjct: 147 APNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAER 206

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++  M   GLKP+    NSM+N   + G+ E   +V   M +   A D  +YN L+  Y 
Sbjct: 207 LVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYC 266

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G   +   +F  +  K + PDVVT+TS +    +       + +  +M + G   +  
Sbjct: 267 KAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEV 326

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T   LI     +  ++     VR M +
Sbjct: 327 TFTALIDGFCKKGFLDDALLAVRGMRQ 353



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 1/191 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA      M++  I P++  +  L+  Y   G + +   ++++M   GLKPD    +
Sbjct: 340 FLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYS 399

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ Y +        E+   M +     D  TY+ LI +      +     LF+++   
Sbjct: 400 TIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKL 459

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS-SEDQIEQ 232
            L+PD  T+TS +  + ++    R L + ++M+ AG  PD  T  VLI+  S S   +E 
Sbjct: 460 GLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEA 519

Query: 233 VTTLVRTMHKD 243
              L +  H++
Sbjct: 520 QQLLFKLYHEE 530



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/239 (18%), Positives = 94/239 (39%), Gaps = 50/239 (20%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD----TF 110
            SDAH +F+ M +LG+ P   ++  L+  + K GNV +   + ++M K+G+ PD    + 
Sbjct: 446 LSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSV 505

Query: 111 VIN----------------------------------------------SMLNLYGRLGQ 124
           +IN                                              ++L  +   G 
Sbjct: 506 LINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGL 565

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             + ++V  +M   ++  D S Y++LI+ + R G + K     + +  +   P+  +  S
Sbjct: 566 MNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTIS 625

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +       +     ++ +++++     D   +K LI    +E  ++ V  ++  M KD
Sbjct: 626 LIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKD 684


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 6/188 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +  EM   G+ P + ++  L+    K GN+ +   ++ +M  +G  PDT    ++++
Sbjct: 481 ANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMD 540

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++G+  K  E+L  M        I T+N+L+N +   G +E  E L + +  K + P
Sbjct: 541 AYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMP 600

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTL 236
           +  T+ S +  Y  +   R  +EI++ M   G  PD  T  +LI   C + +  E     
Sbjct: 601 NATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKE----- 655

Query: 237 VRTMHKDM 244
              +HK+M
Sbjct: 656 AWFLHKEM 663



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 90/184 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH++  +M+  G  P + S+ +++  Y +   + K   ++ ++ + GLKP+ +  NS++
Sbjct: 270 EAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSII 329

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+  + E+VL  M+      D   Y  LI+ +G+ G +     LF  +  K++ 
Sbjct: 330 SFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIV 389

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+TS +    +        ++F EM+  G  PD  T   LI       ++++  +L
Sbjct: 390 PDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSL 449

Query: 237 VRTM 240
              M
Sbjct: 450 HNQM 453



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM   G+ P   ++  L+  Y K G + +   + NQM + GL P+     +++
Sbjct: 410 EARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALV 469

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+ +   E+L  M +     ++ TYN LIN   + G IE+   L + +      
Sbjct: 470 DGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFF 529

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD +T+T+ + AY +     +  E+   M+D G  P   T  VL++       +E    L
Sbjct: 530 PDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERL 589

Query: 237 VRTM 240
           ++ M
Sbjct: 590 IKWM 593



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 85/180 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EE++R G+ P   ++  +++   KTG V + E V+  M    + PD  V  ++++ +G
Sbjct: 309 LMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFG 368

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G      ++   M++     D  TY  +I+   + G + +   LF  + +K LKPD V
Sbjct: 369 KSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEV 428

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T+ +  Y +    +    +  +M++ G  P+  T   L+       +++    L+  M
Sbjct: 429 TYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM 488



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 88/185 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S  + +F+EMKR  I P   ++  ++    + G V +   + ++M   GLKPD     ++
Sbjct: 374 SVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTAL 433

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y + G+ ++   +   M +     ++ TY  L++   + G ++    L   +  K L
Sbjct: 434 IDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGL 493

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+V T+ + +    +     + +++ EEM  AG +PD  T   ++ A     ++ +   
Sbjct: 494 QPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHE 553

Query: 236 LVRTM 240
           L+R M
Sbjct: 554 LLRIM 558



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 87/185 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A ++  +M   G+TP + ++  L+    K G V     ++++M + GL+P+    N+++
Sbjct: 445 EAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALI 504

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   ++G  E+  +++  M+   +  D  TY  +++ Y + G + K   L + +  K L+
Sbjct: 505 NGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQ 564

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +VT+   +  +    +      + + M+D G  P+  T   L+      + +     +
Sbjct: 565 PTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEI 624

Query: 237 VRTMH 241
            + MH
Sbjct: 625 YKGMH 629



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 82/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V   MK   I P    +  L++ + K+GNV+    + ++M +  + PD     SM+
Sbjct: 340 EAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMI 399

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+  +  ++ + M       D  TY  LI+ Y + G +++   L   +  K L 
Sbjct: 400 HGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLT 459

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VVT+T+ +    +        E+  EM + G  P+  T   LI+       IEQ   L
Sbjct: 460 PNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKL 519

Query: 237 VRTM 240
           +  M
Sbjct: 520 MEEM 523



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 4/205 (1%)

Query: 45  NLFVFIFSIYFS---DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           NLF+   S  F     A  VF E   +G+     S+ ++L    + G V +   ++ QM 
Sbjct: 220 NLFLARLSNSFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQME 279

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
             G  PD    + +++ Y ++ Q  K+ +++  +++     +  TYN +I+   + G + 
Sbjct: 280 FRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVV 339

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + E + + +  +R+ PD V +T+ ++ + +        ++F+EM      PD  T   +I
Sbjct: 340 EAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMI 399

Query: 222 SA-CSSEDQIEQVTTLVRTMHKDMK 245
              C +   +E        + K +K
Sbjct: 400 HGLCQAGKVVEARKLFSEMLSKGLK 424



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 73/181 (40%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           + AH +   M   G+ PT+ +  +L+  +  +G +   E +I  M   G+ P+    NS+
Sbjct: 549 AKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSL 608

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y          E+   M       D +TYNILI  + +   +++   L + +  K  
Sbjct: 609 MKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGF 668

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
                ++ S +  + ++K +    ++FEEM   G   +     + +     E   E    
Sbjct: 669 SLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLE 728

Query: 236 L 236
           L
Sbjct: 729 L 729


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AVF EM + G+ P + +   L+ A  K GN+ +   ++ QM + GL+ +     ++++ +
Sbjct: 137 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 196

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G  +     +  M K      +  YN LIN Y + G ++    L + + AKR+KPDV
Sbjct: 197 CKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 256

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+++ ++ Y +        ++ ++M+  G  PD  T   LI     E ++     L   
Sbjct: 257 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFEN 316

Query: 240 M 240
           M
Sbjct: 317 M 317



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 13/216 (6%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            P++  F   I+          A A+  +M+  G+     +   L+  + K G +     
Sbjct: 148 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 207

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            + +M K G++P     N+++N Y +LG+ +   E++  ME      D+ TY+ +I+ Y 
Sbjct: 208 AVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 267

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G ++    L Q +  K + PD +T++S +     +K      E+FE M+  G  PD  
Sbjct: 268 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 327

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDM--KTALP 249
           T   LI     E  +E+  +L    H +M  K  LP
Sbjct: 328 TYTTLIDGHCKEGNVEKALSL----HDEMIRKGVLP 359



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 1/191 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA    EEM++ GI P++  +  L+  Y K G +     +I +M    +KPD    +
Sbjct: 201 FLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYS 260

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ Y ++G  +   ++   M K     D  TY+ LI        +     LF+++   
Sbjct: 261 TIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL 320

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++PD  T+T+ +  + ++    + L + +EMI  G  PD  T  VLI+  S   + ++ 
Sbjct: 321 GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEA 380

Query: 234 TTLV-RTMHKD 243
             L+ +  H+D
Sbjct: 381 HRLLFKLYHED 391



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 1/189 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVIN 113
             +A  V  +M+  G  P   ++  L+ A+ + G +   E V++ M + G  KP+    N
Sbjct: 26  LEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFN 85

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           SM+N   + G+ E   +V   M +   A D+ +YN L++ Y + G + +   +F  +  +
Sbjct: 86  SMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQR 145

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PDVVT+TS + A  +     + + +  +M + G   +  T   LI     +  ++  
Sbjct: 146 GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 205

Query: 234 TTLVRTMHK 242
              V  M K
Sbjct: 206 LLAVEEMRK 214



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 74/170 (43%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + +   ++    K G +     V ++M + GL PD    N++L+ Y ++G   +   V
Sbjct: 79  PNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 138

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            + M +     D+ T+  LI+   + G +E+   L   +  + L+ + VT+T+ +  + +
Sbjct: 139 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 198

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           K      L   EEM   G  P       LI+      +++    L+R M 
Sbjct: 199 KGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 248



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 36/179 (20%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M + G+ P+ +  N ++      G+ E+   V+  M     A +  TYN L+  + R G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 160 IE---------------------------------KMEG---LFQSLPAKRLKPDVVTWT 183
           ++                                 +MEG   +F  +  + L PDVV++ 
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           + L+ Y +       L +F EM   G  PD  T   LI A      +EQ   LV  M +
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE 179



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/211 (18%), Positives = 90/211 (42%), Gaps = 19/211 (9%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  +FE M +LG+ P   ++  L+  + K GNV K   + ++M + G+ PD    + 
Sbjct: 307 LNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSV 366

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG---------------GF 159
           ++N   +  + ++   +L  +       D   Y+ L+    +                G 
Sbjct: 367 LINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGL 426

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++ + ++QS+  +  K D   ++  +  + R    R+ L   ++M+ +G  P+  +   
Sbjct: 427 MKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTIS 486

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
           L+     E  + +    +    +D+ T  P+
Sbjct: 487 LVRGLFEEGMVVEADNAI----QDLLTCCPL 513



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/182 (18%), Positives = 73/182 (40%), Gaps = 15/182 (8%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A  + ++M + G+ P   ++  L+    +   +     +   M + G++PD F   +
Sbjct: 272 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 331

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G  EK   +   M +     D+ TY++LIN   +    ++   L   L  + 
Sbjct: 332 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 391

Query: 175 LKPDVVTW---------------TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             PD + +                + L  +  K L +   ++++ M+D     DG    +
Sbjct: 392 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 451

Query: 220 LI 221
           LI
Sbjct: 452 LI 453


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 90/184 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +M    I PT+ +  +L+ A+ K G V + + V   M K  +KP+    NS++
Sbjct: 262 DAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLM 321

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y  + +  K E +   M +   A D+ +Y+I+I+ + +   +++   LF+ +  K++ 
Sbjct: 322 NGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIF 381

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+ S +    +       L++  EM D G  P+  T   L+ A      +++   L
Sbjct: 382 PDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIEL 441

Query: 237 VRTM 240
           +  +
Sbjct: 442 LTKL 445



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 87/186 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA   + EM    I PT+ ++  L+      G +    G++++M    + P  +  + +
Sbjct: 226 NDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSIL 285

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+ ++ + V   M K     +I TYN L+N Y     + K E +F ++    +
Sbjct: 286 VDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGV 345

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV +++  ++ + + K+    +++FEEM     +PD  T   LI       +I     
Sbjct: 346 APDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALK 405

Query: 236 LVRTMH 241
           L+  MH
Sbjct: 406 LIGEMH 411



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 68/137 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +FEEM    I P + ++  L+    K+G ++    +I +MH  G  P+    NS+
Sbjct: 366 DEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSL 425

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +    +K  E+LT ++  +    + TYNILIN   + G ++  + +F+ +     
Sbjct: 426 LDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGY 485

Query: 176 KPDVVTWTSRLAAYSRK 192
             DV T+ + +  + +K
Sbjct: 486 NIDVYTYNTMIKGFCKK 502



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 1/171 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF  M +  + P + ++  L+  Y     V K E + N M + G+ PD    + M+
Sbjct: 297 EAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMI 356

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + ++   ++  ++   M       D+ TYN LI+   + G I     L   +  +   
Sbjct: 357 SGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQP 416

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSS 226
           P+++T+ S L A  +     + +E+  ++ D    P   T  +LI+  C S
Sbjct: 417 PNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKS 467



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/166 (19%), Positives = 75/166 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F  M ++G+ P + S+ ++++ + K   V +   +  +MH   + PD    NS+++
Sbjct: 333 AESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLID 392

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+     +++  M       +I TYN L++   +   ++K   L   L    ++P
Sbjct: 393 GLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQP 452

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            V T+   +    +    +   ++FE+++  G   D  T   +I  
Sbjct: 453 SVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKG 498



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 85/200 (42%), Gaps = 1/200 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S + +VF  + + G  P   +   L+      G++ K     +++   G + +     ++
Sbjct: 121 SLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTL 180

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   ++GQ +   E+L  ++      D+  YN +I+   +   +      +  + AKR+
Sbjct: 181 INGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRI 240

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV-T 234
            P VVT+ + +         +  + +  +MI     P   T  +L+ A   E ++++   
Sbjct: 241 CPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKN 300

Query: 235 TLVRTMHKDMKTALPIYFNL 254
             V  M KD+K  +  Y +L
Sbjct: 301 VFVVMMKKDVKPNIVTYNSL 320


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  ++E+MK LGI      +  +L  Y K G   +   V ++M  SG++ DT   NS
Sbjct: 390 YDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNS 449

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+ G+ + +  ++  M +   A  + TY+ LI+IY + G       ++       
Sbjct: 450 LINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESG 509

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LKPDVV ++S +   ++  L    L +  +M + G  P+  T   +I A
Sbjct: 510 LKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDA 558



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 1/159 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINS 114
           ++A  V E MK  G+ PT  ++  ++ A  K G ++    G   QM +  L PD    NS
Sbjct: 250 NEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNS 309

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   R G  E    +   M       DI TYN  I+   + G IE    +   + AK 
Sbjct: 310 LLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKN 369

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +KP+VVT+++ +  YS+ + Y   L+++E+M   G   D
Sbjct: 370 VKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLD 408



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 86/183 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M+   + P + ++  L+  YSK     +   +  +M   G++ D    N++L 
Sbjct: 358 AMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLA 417

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y + G++ ++  V   ME      D  TYN LIN YG+ G ++ +  L Q +  + + P
Sbjct: 418 IYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAP 477

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V+T+++ +  YS+  ++     ++ +  ++G  PD       I   +    +E   +L+
Sbjct: 478 SVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLL 537

Query: 238 RTM 240
             M
Sbjct: 538 NDM 540



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 89/181 (49%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M R  + P  K+   LL+A S+ G++     + ++M   G+  D +  N+ ++   +
Sbjct: 292 FRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICK 351

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  E   +VL  ME  +   ++ TY+ LI+ Y +    ++   L++ + +  ++ D V 
Sbjct: 352 CGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVC 411

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + LA Y +   Y     + +EM D+G   D  T   LI+    + +++ V+ LV+ M 
Sbjct: 412 YNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMR 471

Query: 242 K 242
           +
Sbjct: 472 R 472



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 2/148 (1%)

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME-GLF 167
            F  +++++ Y R G   +   VL +M+         TYN +I+  G+GG   +   G F
Sbjct: 233 VFANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYF 292

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +   RL PD  T+ S L+A SR         +F+EMI  G   D  T    I A    
Sbjct: 293 RQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKC 352

Query: 228 DQIEQVTTLVRTMH-KDMKTALPIYFNL 254
             IE    ++  M  K++K  +  Y  L
Sbjct: 353 GNIELAMQVLLDMEAKNVKPNVVTYSTL 380



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           ++ + +   G++ + +       A   G Y   +   + LI+ Y R G + +  G+ +S+
Sbjct: 200 LLTAAIGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESM 259

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
               L+P  VT+ + + A  +  +  R  L  F +M+     PD  T   L+SACS    
Sbjct: 260 KGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGH 319

Query: 230 IEQVTTLVRTM 240
           +E    L   M
Sbjct: 320 LEDARALFDEM 330


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 43  TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+F F   I F       ++A ++F  MK +G  P + +   L+  Y K G + + E 
Sbjct: 185 APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQ 244

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M +SG K D    N+++N + + G+ E       AM++    A++ T++  ++ + 
Sbjct: 245 LVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFC 304

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G + +   LF  +  + +  +  T+T  +    +       + + +EM+  G   +  
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  VL+     E ++ +   ++R M K
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEK 391



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 77/161 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  + +EM R G+   + ++ +L+    K   VA+ E V+  M K+G++ +  +  +
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +      EK   +L+ M+      DIS Y  LI        +++ + L   +    
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           L+P+ + +T+ + A  +       + + ++++D+G  P+ G
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNG 504



 Score = 44.3 bits (103), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 13/168 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A ++  +M   G+ P    +  ++ A  K+G V +   ++ ++  SG +P+   +N 
Sbjct: 449 LDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNE 508

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            + L+  +            + KG  + D   Y  L++ Y + G +     L   +    
Sbjct: 509 AVQLFNEM------------VHKG-MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG 555

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           L+ D+  +T  ++ +    +     E+F EMI  G  PD      LI+
Sbjct: 556 LQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLIT 603



 Score = 37.0 bits (84), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 31/184 (16%), Positives = 77/184 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M+  G+     ++  L+    K G +     ++++M + G+  +      ++
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  +  + E+VL  MEK    A+   Y  LI+ +      EK  GL   +  K L+
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+  + + +              +  +M ++G  P+      ++ AC    ++ +   +
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 237 VRTM 240
           ++ +
Sbjct: 491 LQKI 494


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 92/188 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +F+EM    + P   +  +L+    K G V++   V   M + G +P+ +  N+
Sbjct: 287 LNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNA 346

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y    Q ++  +VL  M     A ++S+YNILIN Y +   + + + L   +  K 
Sbjct: 347 LMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKN 406

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD VT+++ +    +    R  L +F+EM  +G  PD     +L+        +++  
Sbjct: 407 LTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEAL 466

Query: 235 TLVRTMHK 242
            L++ MH+
Sbjct: 467 KLLKEMHE 474



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 88/186 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++  +M   G+T  + S  +L+    +  +V     V+ +M K G++PD    N+
Sbjct: 112 YSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNT 171

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N     G+ ++   +   M    +  ++ +YN +IN   + G       +F+ +   R
Sbjct: 172 LINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNR 231

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+VVT+ + + +  + +L    +E   EM+D G  PD  T   ++    S  Q+ + T
Sbjct: 232 GKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEAT 291

Query: 235 TLVRTM 240
            L + M
Sbjct: 292 RLFKEM 297



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 78/183 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +V  +M +LGI P   +   L+      G + +  G+ N+M  SG +P+    N+++N
Sbjct: 150 AVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVIN 209

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G       V   ME+     ++ TYN +I+   +   + +       +  + + P
Sbjct: 210 GLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPP 269

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+ + L  +           +F+EM+     PD  T  +L+     E  + +   + 
Sbjct: 270 DVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVS 329

Query: 238 RTM 240
            TM
Sbjct: 330 ETM 332



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 75/169 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +  EM    +TP   ++  L+    + G   +   +  +M  SGL PD    + 
Sbjct: 392 MNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSI 451

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ + + G  ++  ++L  M +     +I  Y ILI      G +E  + LF  L A  
Sbjct: 452 LLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADG 511

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++PD+ T+   +    ++ L     E F +M D G  PD  +  V+I  
Sbjct: 512 IRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQG 560



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 86/187 (45%), Gaps = 6/187 (3%)

Query: 63  EEMKRLGI------TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           E +K LGI       P + S+ +L+  Y K+  + + + ++++M +  L PDT   ++++
Sbjct: 359 EAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLM 418

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               ++G+  +   +   M       D+  Y+IL++ + + G +++   L + +  +R+K
Sbjct: 419 QGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIK 478

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+++ +T  +             E+F ++   G  PD  T  V+I     E   ++    
Sbjct: 479 PNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEF 538

Query: 237 VRTMHKD 243
            R M  D
Sbjct: 539 FRKMEDD 545



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 84/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF +M++    P + ++  ++ +  K   V +    +++M   G+ PD    N++L+
Sbjct: 220 AVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILH 279

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  LGQ  +   +   M   +   D  T+NIL++   + G + +   + +++  K  +P
Sbjct: 280 GFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEP 339

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+ + +  Y         +++   MI  GC P+  +  +LI+      ++ +   L+
Sbjct: 340 NAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLL 399

Query: 238 RTMHK 242
             M +
Sbjct: 400 SEMSE 404



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/176 (19%), Positives = 84/176 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM   G+ P + ++ +LL  + K G++ +   ++ +MH+  +KP+  +   ++
Sbjct: 429 EALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILI 488

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 G+ E  +E+ + +       DI TYN++I    + G  ++    F+ +      
Sbjct: 489 RGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFL 548

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           PD  ++   +  + + +     +++ +EM+      D  T ++L+   S ++ I +
Sbjct: 549 PDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESHDEIISR 604



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 80/184 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM   G  P + S+  ++    K GN      V  +M ++  KP+    N+++
Sbjct: 184 EAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTII 243

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +     +  E L+ M       D+ TYN +++ +   G + +   LF+ +  + + 
Sbjct: 244 DSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVM 303

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+   +    ++ +      + E M + G  P+  T   L+      +Q+++   +
Sbjct: 304 PDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKV 363

Query: 237 VRTM 240
           +  M
Sbjct: 364 LGIM 367


>gi|357153691|ref|XP_003576535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
           chloroplastic-like [Brachypodium distachyon]
          Length = 936

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 1/169 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F+ A  VF   ++ G    + S+  ++ AY+ +G+       + +M  +G        N 
Sbjct: 740 FNRAQKVFNMARKQGQADII-SYNTIIAAYAHSGDFRSMTYFVQKMQDAGFPVSLEAYNC 798

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN YG+ GQ E+   VL  M +     D  TYNI++NIYGR G+IE +  +   L ++ 
Sbjct: 799 MLNAYGKAGQLEEFAAVLQKMRRAKCDFDHYTYNIMLNIYGRKGWIEGVAYVLSELKSRG 858

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++PD+ ++ + + AY    +    +++ +EM   G   D  T   LI+A
Sbjct: 859 VEPDLYSYNTLIKAYGIAGMPEDAVKLMQEMRLKGINADRITYTNLIAA 907



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 1/173 (0%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P + +  +L+  Y KTGN+++ E    +M +  +K      ++M+ LY R G F+K E
Sbjct: 266 VQPNVSTVGMLMGLYQKTGNLSEAEFTFAKMRECNVKC-INAYSAMITLYTRSGLFDKSE 324

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           EV+  M      A++  + + +N Y + G +E+ + + QS+  + + P+VV + + +  Y
Sbjct: 325 EVIVLMNDDKVIANLENWLVQLNAYSQQGKMEEAKLILQSMVDEGVSPNVVAFNTLITGY 384

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +    ++  E+F  +  AG  PD  T + +I      D+ ++     R + +
Sbjct: 385 GKVSDMQKAKEVFNSLEKAGLAPDETTYRSMIEGFGRADKYDEALLYYRKLKE 437



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 2/195 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM +LG   +  +  +LL  Y K G   + + V N   K G + D    N+++  Y 
Sbjct: 711 IFDEMIQLGHMASTITLNVLLDIYGKAGLFNRAQKVFNMARKQG-QADIISYNTIIAAYA 769

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G F  M   +  M+   +   +  YN ++N YG+ G +E+   + Q +   +   D  
Sbjct: 770 HSGDFRSMTYFVQKMQDAGFPVSLEAYNCMLNAYGKAGQLEEFAAVLQKMRRAKCDFDHY 829

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   L  Y RK        +  E+   G  PD  +   LI A       E    L++ M
Sbjct: 830 TYNIMLNIYGRKGWIEGVAYVLSELKSRGVEPDLYSYNTLIKAYGIAGMPEDAVKLMQEM 889

Query: 241 H-KDMKTALPIYFNL 254
             K +      Y NL
Sbjct: 890 RLKGINADRITYTNL 904



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 94/211 (44%), Gaps = 19/211 (9%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           ++  + ++  S  F  +  V   M    +   +++ ++ L AYS+ G + + + ++  M 
Sbjct: 307 YSAMITLYTRSGLFDKSEEVIVLMNDDKVIANLENWLVQLNAYSQQGKMEEAKLILQSMV 366

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
             G+ P+    N+++  YG++   +K +EV  ++EK   A D +TY  +I  +GR    +
Sbjct: 367 DEGVSPNVVAFNTLITGYGKVSDMQKAKEVFNSLEKAGLAPDETTYRSMIEGFGRADKYD 426

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +    ++ L     +P+   + + +   +R        EI ++M+ AGC           
Sbjct: 427 EALLYYRKLKESGFQPNASNFYTMINLIARHDENESAAEILKDMMAAGC----------- 475

Query: 222 SACSSEDQIEQVTTLVRTMHK--DMKTALPI 250
             CSS      +T LVR   +   M   LPI
Sbjct: 476 -QCSS-----IITILVRAYAQVGGMNKVLPI 500



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 93/202 (46%), Gaps = 10/202 (4%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L Q T NL         S+A   F +M+   +   + ++  ++T Y+++G   K E VI 
Sbjct: 279 LYQKTGNL---------SEAEFTFAKMRECNV-KCINAYSAMITLYTRSGLFDKSEEVIV 328

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M+   +  +       LN Y + G+ E+ + +L +M     + ++  +N LI  YG+  
Sbjct: 329 LMNDDKVIANLENWLVQLNAYSQQGKMEEAKLILQSMVDEGVSPNVVAFNTLITGYGKVS 388

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            ++K + +F SL    L PD  T+ S +  + R   Y   L  + ++ ++G  P+     
Sbjct: 389 DMQKAKEVFNSLEKAGLAPDETTYRSMIEGFGRADKYDEALLYYRKLKESGFQPNASNFY 448

Query: 219 VLISACSSEDQIEQVTTLVRTM 240
            +I+  +  D+ E    +++ M
Sbjct: 449 TMINLIARHDENESAAEILKDM 470



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 57  DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           DA +V E+M K+  I P     + +L  Y K G + K       + KS ++ D  + N +
Sbjct: 636 DACSVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLTDTYYWILKSQVECDEAMNNCI 695

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  G     +++  +   M +  + A   T N+L++IYG+ G   + + +F ++  K+ 
Sbjct: 696 INCCGPAIPVDELTRIFDEMIQLGHMASTITLNVLLDIYGKAGLFNRAQKVF-NMARKQG 754

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA-KVLISACSSEDQIEQVT 234
           + D++++ + +AAY+    +R      ++M DAG +P    A   +++A     Q+E+  
Sbjct: 755 QADIISYNTIIAAYAHSGDFRSMTYFVQKMQDAG-FPVSLEAYNCMLNAYGKAGQLEEFA 813

Query: 235 TLVRTMHK-----DMKTALPIYFNLYGEKG 259
            +++ M +     D  T   I  N+YG KG
Sbjct: 814 AVLQKMRRAKCDFDHYT-YNIMLNIYGRKG 842



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/218 (17%), Positives = 93/218 (42%), Gaps = 5/218 (2%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           +F+ +    +A  V  E K          + +L+ +  + G+      + N+M KS L P
Sbjct: 522 LFVQNSLLEEALCVLREKKWKDSDFEDNLYHILVCSCKEAGSYDAAVSIYNEMPKSKLHP 581

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +  +  SM++++  + +F   E +   ++  +   D+  Y++++ +Y + G  E    + 
Sbjct: 582 NLRISCSMIDVFSTMERFTDAETLYLELKTSACVLDMIAYSVIVRMYTKAGRPEDACSVL 641

Query: 168 QSLPA-KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           + +   K + PD   +   L  Y +  L  +  + +  ++ +    D      +I+ C  
Sbjct: 642 EDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLTDTYYWILKSQVECDEAMNNCIINCCGP 701

Query: 227 EDQIEQVTTLVRTM----HKDMKTALPIYFNLYGEKGV 260
              ++++T +   M    H      L +  ++YG+ G+
Sbjct: 702 AIPVDELTRIFDEMIQLGHMASTITLNVLLDIYGKAGL 739



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 63/145 (43%), Gaps = 1/145 (0%)

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
           N M    ++P+   +  ++ LY + G   + E     M + +    I+ Y+ +I +Y R 
Sbjct: 259 NMMLDREVQPNVSTVGMLMGLYQKTGNLSEAEFTFAKMRECNVKC-INAYSAMITLYTRS 317

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G  +K E +   +   ++  ++  W  +L AYS++        I + M+D G  P+    
Sbjct: 318 GLFDKSEEVIVLMNDDKVIANLENWLVQLNAYSQQGKMEEAKLILQSMVDEGVSPNVVAF 377

Query: 218 KVLISACSSEDQIEQVTTLVRTMHK 242
             LI+       +++   +  ++ K
Sbjct: 378 NTLITGYGKVSDMQKAKEVFNSLEK 402


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 86/187 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM    + P   +   L++ Y +   +    G + +M   G+KPD  + ++++ 
Sbjct: 44  AEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIE 103

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           L G++  + K   + + ++    A D   YN +IN+YG+  F ++ +GL   +    L P
Sbjct: 104 LAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMP 163

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++T  + AY+  + Y    ++F EM   G   D  T  ++I      + +     L 
Sbjct: 164 DTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELF 223

Query: 238 RTMHKDM 244
            +M K +
Sbjct: 224 WSMSKTL 230



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P++ ++ ++L    +       EG++ +M +  L PD F  +++++ YGR  + E  
Sbjct: 20  GYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDA 79

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
              L  ME G    D+  ++ LI + G+     K   LF  L A  + PD V + S +  
Sbjct: 80  MGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINL 139

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           Y + K Y+    +  EM +AG  PD  +  +LI+A
Sbjct: 140 YGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINA 174



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 92/191 (48%), Gaps = 2/191 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++ +A  +  EMK  G+ P   S+ +L+ AY+++    + + V  +M   G++ D    N
Sbjct: 145 FYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCN 204

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            M+++YG+L      EE+  +M K      ++ TYN +I +Y     + +   +F  +  
Sbjct: 205 MMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQN 264

Query: 173 K-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           K  ++P+V+T+ + L  +     + + + +  +M   G  P+  T   LIS      + +
Sbjct: 265 KGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYD 324

Query: 232 QVTTLVRTMHK 242
           +   L +T+ +
Sbjct: 325 RAAFLFKTLRE 335



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L +F   I        +S A ++F ++K  GI P    +  ++  Y K     + +G+
Sbjct: 93  PDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGL 152

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M ++GL PDT     ++N Y    ++ + ++V   M+      D++T N++I++YG+
Sbjct: 153 LAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGK 212

Query: 157 GGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDG 214
              +   E LF S+     ++ +VVT+ + +  Y   +L      +F  M +  G  P+ 
Sbjct: 213 LEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNV 272

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHK 242
            T   ++       Q E+   LVR M +
Sbjct: 273 ITYNTILFLHGLTLQHEKAMRLVRKMQQ 300



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 7/170 (4%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            P+ F F  + S Y       DA    +EM+  GI P +     L+    K  + +K   
Sbjct: 57  VPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATS 116

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + +++  SG+ PD  + NSM+NLYG+   +++ + +L  M++     D  +Y ILIN Y 
Sbjct: 117 LFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYA 176

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
                 + + +F  +  K ++ DV T    +  Y + ++ R   E+F  M
Sbjct: 177 ESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSM 226



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 6/198 (3%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           LF+   ++    A  +  +M++ GI P   ++  L++ Y KTG   +   +   + + G 
Sbjct: 279 LFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGF 338

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           + D  +  SM+ +Y R G     + +L  +++     DI   +  I+I  +   +E+   
Sbjct: 339 EMDEILYQSMIVVYERAGLVAHAKRLLEELKQ----PDIVPRDTAISILAKAEKLEEAAK 394

Query: 166 LF-QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           L+ +S  A  +K + VT+ S +  + R K  +  +++FE M ++G  PD  T  VL++A 
Sbjct: 395 LYWRSHEAGEIK-ESVTYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAY 453

Query: 225 SSEDQIEQVTTLVRTMHK 242
               Q+E    L   M +
Sbjct: 454 GQLRQLEDAEKLYLDMRE 471



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 6/188 (3%)

Query: 57  DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVINS 114
           DA  +F  M K LGI   + ++  ++  Y +   +++   V   M  K G++P+    N+
Sbjct: 218 DAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNT 277

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L L+G   Q EK   ++  M++     +  TY+ LI+IYG+ G  ++   LF++L  K 
Sbjct: 278 ILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKG 337

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            + D + + S +  Y R  L      + EE+      PD       IS  +  +++E+  
Sbjct: 338 FEMDEILYQSMIVVYERAGLVAHAKRLLEELKQ----PDIVPRDTAISILAKAEKLEEAA 393

Query: 235 TLVRTMHK 242
            L    H+
Sbjct: 394 KLYWRSHE 401



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           + K G  P  F  N +L    R  Q+E  E ++  M +     D  T++ LI+ YGR   
Sbjct: 16  IEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANR 75

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +E   G  Q + A  +KPD+V +++ +    + K Y +   +F ++  +G  PD
Sbjct: 76  LEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPD 129



 Score = 44.7 bits (104), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 1/127 (0%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           +F+ +    +A  VFE M+  G  P  ++ ++LL AY +   +   E +   M + G   
Sbjct: 417 LFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTL 476

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +  V   ML LYG   +  + E++  A++      D   Y  +I IY R   + +   LF
Sbjct: 477 EKEVHFQMLKLYGDARKIREAEDMFAALKLEGLDGD-ELYLTMIRIYERASKLNEASRLF 535

Query: 168 QSLPAKR 174
             + +++
Sbjct: 536 SEMKSRQ 542



 Score = 43.9 bits (102), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 43/102 (42%)

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           +EKG YA  I  YN+++    R    E  EGL   +  K L PD  T+++ ++ Y R   
Sbjct: 16  IEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANR 75

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
               +   +EM   G  PD      LI          + T+L
Sbjct: 76  LEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSL 117



 Score = 38.9 bits (89), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 4/135 (2%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           + T KS + L     ++ N      V   M +SG  PD+     +L  YG+L Q E  E+
Sbjct: 408 SVTYKSMIQLFVRNKRSKNAID---VFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEK 464

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +   M +     +   +  ++ +YG    I + E +F +L  + L  D + + + +  Y 
Sbjct: 465 LYLDMRERGCTLEKEVHFQMLKLYGDARKIREAEDMFAALKLEGLDGDEL-YLTMIRIYE 523

Query: 191 RKKLYRRCLEIFEEM 205
           R         +F EM
Sbjct: 524 RASKLNEASRLFSEM 538


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 86/187 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM    + P   +   L++ Y +   +    G + +M   G+KPD  + ++++ 
Sbjct: 44  AEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIE 103

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           L G++  + K   + + ++    A D   YN +IN+YG+  F ++ +GL   +    L P
Sbjct: 104 LAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMP 163

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++T  + AY+  + Y    ++F EM   G   D  T  ++I      + +     L 
Sbjct: 164 DTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELF 223

Query: 238 RTMHKDM 244
            +M K +
Sbjct: 224 WSMSKTL 230



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P++ ++ ++L    +       EG++ +M +  L PD F  +++++ YGR  + E  
Sbjct: 20  GYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDA 79

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
              L  ME G    D+  ++ LI + G+     K   LF  L A  + PD V + S +  
Sbjct: 80  MGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINL 139

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           Y + K Y+    +  EM +AG  PD  +  +LI+A
Sbjct: 140 YGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINA 174



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 92/191 (48%), Gaps = 2/191 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++ +A  +  EMK  G+ P   S+ +L+ AY+++    + + V  +M   G++ D    N
Sbjct: 145 FYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCN 204

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            M+++YG+L      EE+  +M K      ++ TYN +I +Y     + +   +F  +  
Sbjct: 205 MMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQN 264

Query: 173 K-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           K  ++P+V+T+ + L  +     + + + +  +M   G  P+  T   LIS      + +
Sbjct: 265 KGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYD 324

Query: 232 QVTTLVRTMHK 242
           +   L +T+ +
Sbjct: 325 RAAFLFKTLRE 335



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L +F   I        +S A ++F ++K  GI P    +  ++  Y K     + +G+
Sbjct: 93  PDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGL 152

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M ++GL PDT     ++N Y    ++ + ++V   M+      D++T N++I++YG+
Sbjct: 153 LAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGK 212

Query: 157 GGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDG 214
              +   E LF S+     ++ +VVT+ + +  Y   +L      +F  M +  G  P+ 
Sbjct: 213 LEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNV 272

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHK 242
            T   ++       Q E+   LVR M +
Sbjct: 273 ITYNTILFLHGLTLQHEKAMRLVRKMQQ 300



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 7/170 (4%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            P+ F F  + S Y       DA    +EM+  GI P +     L+    K  + +K   
Sbjct: 57  VPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATS 116

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + +++  SG+ PD  + NSM+NLYG+   +++ + +L  M++     D  +Y ILIN Y 
Sbjct: 117 LFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYA 176

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
                 + + +F  +  K ++ DV T    +  Y + ++ R   E+F  M
Sbjct: 177 ESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSM 226



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 6/198 (3%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           LF+   ++    A  +  +M++ GI P   ++  L++ Y KTG   +   +   + + G 
Sbjct: 279 LFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGF 338

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           + D  +  SM+ +Y R G     + +L  +++     DI   +  I+I  +   +E+   
Sbjct: 339 EMDEILYQSMIVVYERAGLVAHAKRLLEELKQ----PDIVPRDTAISILAKAEKLEEAAK 394

Query: 166 LF-QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           L+ +S  A  +K + VT+ S +  + R K  +  +++FE M ++G  PD  T  VL++A 
Sbjct: 395 LYWRSHEAGEIK-ESVTYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAY 453

Query: 225 SSEDQIEQVTTLVRTMHK 242
               Q+E    L   M +
Sbjct: 454 GQLRQLEDAEKLYLDMRE 471



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 6/188 (3%)

Query: 57  DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVINS 114
           DA  +F  M K LGI   + ++  ++  Y +   +++   V   M  K G++P+    N+
Sbjct: 218 DAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNT 277

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L L+G   Q EK   ++  M++     +  TY+ LI+IYG+ G  ++   LF++L  K 
Sbjct: 278 ILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKG 337

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            + D + + S +  Y R  L      + EE+      PD       IS  +  +++E+  
Sbjct: 338 FEMDEILYQSMIVVYERAGLVAHAKRLLEELKQ----PDIVPRDTAISILAKAEKLEEAA 393

Query: 235 TLVRTMHK 242
            L    H+
Sbjct: 394 KLYWRSHE 401



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           + K G  P  F  N +L    R  Q+E  E ++  M +     D  T++ LI+ YGR   
Sbjct: 16  IEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANR 75

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +E   G  Q + A  +KPD+V +++ +    + K Y +   +F ++  +G  PD
Sbjct: 76  LEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPD 129



 Score = 44.3 bits (103), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VFE M+  G  P  ++ ++LL AY +   +   E +   M + G   +  V   ML
Sbjct: 426 NAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQML 485

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            LYG   +  + E++  A++      D   Y  +I IY R   + +   LF  + +++
Sbjct: 486 KLYGDARKIREAEDMFAALKLEGLDGD-ELYLTMIRIYERASKLNEASRLFSEMKSRQ 542



 Score = 43.9 bits (102), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 43/102 (42%)

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           +EKG YA  I  YN+++    R    E  EGL   +  K L PD  T+++ ++ Y R   
Sbjct: 16  IEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANR 75

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
               +   +EM   G  PD      LI          + T+L
Sbjct: 76  LEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSL 117



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V   M +SG  PD+     +L  YG+L Q E  E++   M +     +   +  ++ +YG
Sbjct: 430 VFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYG 489

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
               I + E +F +L  + L  D + + + +  Y R         +F EM
Sbjct: 490 DARKIREAEDMFAALKLEGLDGDEL-YLTMIRIYERASKLNEASRLFSEM 538


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 93/198 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM+  G TP+  ++  ++  Y K G +     V+ +M    L PD + +NS++
Sbjct: 137 EATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLI 196

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R G+ E   E+   M+K   A +  ++N +++  G+ G +         + A+ +K
Sbjct: 197 TAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIK 256

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ +T+ + +    R K      ++ +EM  AG  PD  T   +I A +    + +   +
Sbjct: 257 PNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEM 316

Query: 237 VRTMHKDMKTALPIYFNL 254
              M K   +A  + +NL
Sbjct: 317 FGDMEKAGCSANVVTYNL 334



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 87/192 (45%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F+E+ + G  P   ++  ++ +  K GNV      +++M K+GL+PDT + N +L+  G+
Sbjct: 37  FQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGK 96

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
               ++  ++  +M+     AD  TY ILI   GR    E+   LF  +  +   P    
Sbjct: 97  ANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPA 156

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +T+ +  Y +       + + ++M+D    PD  T   LI+A S   + E    +   M 
Sbjct: 157 YTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMK 216

Query: 242 KDMKTALPIYFN 253
           K       + FN
Sbjct: 217 KSGVAVNTVSFN 228



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V ++M    + P   +   L+TA S+TG       +  +M KSG+  +T   N+ML+
Sbjct: 173 AMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLD 232

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G+ G+     + +  ME      +  T+N LIN  GR  +  +   + Q + +  L P
Sbjct: 233 CCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTP 292

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           DV T+T  + A+++     +  E+F +M  AGC  +  T  +LI A
Sbjct: 293 DVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDA 338



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE MK+ G+     S   +L    K G V      +++M   G+KP++   N+++N
Sbjct: 208 ACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLIN 267

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR     +  +VL  M       D+ TY  +I  + + G + K   +F  +       
Sbjct: 268 CLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSA 327

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           +VVT+   + A  +   Y+   +I+ +M   G  PD  TA VL
Sbjct: 328 NVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVL 370



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 54/103 (52%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y S+A+ V +EM+  G+TP + ++  ++ A++K GN+ K   +   M K+G   +    N
Sbjct: 274 YASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYN 333

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            +++   + G+++   ++   M+K     D  T  +L  + G+
Sbjct: 334 LLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVLQQLAGK 376



 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 1/146 (0%)

Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
            V N+++  YGR  +  K+ +    ++K     +  TY  +I    + G +         
Sbjct: 15  LVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDK 74

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +    L+PD + +   L    +  +     ++F  M   GC  D  T  +LI +     +
Sbjct: 75  MIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKR 134

Query: 230 IEQVTTLVRTMHKDMKT-ALPIYFNL 254
            E+ T L   M +   T + P Y N+
Sbjct: 135 DEEATLLFDEMEERGCTPSAPAYTNV 160


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 1/186 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           + A A+ EEMK  G +P ++SH LL+  + K+G+  +    +++M ++GL P+  + N++
Sbjct: 11  AQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNL 70

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G   + E  L  M +   A ++ +YNI+I+ Y +   IEK     + +     
Sbjct: 71  ISCLCKAGMLAEAESYLKRMPQHC-APNVVSYNIIIDGYCKARNIEKALAFLREMEELGH 129

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P    ++S + ++ +     + +++F EM   GC PD     VL+S      +I +   
Sbjct: 130 PPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARE 189

Query: 236 LVRTMH 241
           L R+M+
Sbjct: 190 LFRSMN 195



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 73/170 (42%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P + S+ +++  Y K  N+ K    + +M + G  P     +S++  + + G   K  +
Sbjct: 95  APNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMD 154

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           V   M       DI  +N+L++   R   I +   LF+S+ ++  KPDVVT+ + +A   
Sbjct: 155 VFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLC 214

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + K     + + E M      P   T   LI       +++Q   +   M
Sbjct: 215 KWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKM 264



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 100/237 (42%), Gaps = 27/237 (11%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M   G  P + ++  ++    K   + +   ++ +M +  + P      +++
Sbjct: 186 EARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLI 245

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-----RGGFIEKMEGLFQSLP 171
           +   +  + ++  EV   M +G        Y++LI I G     R G  ++M   FQ + 
Sbjct: 246 DHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEM---FQEMR 302

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            + + P VVT+ + L         +  +E+   M+D    P+  T ++LIS+    DQ+E
Sbjct: 303 GRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVE 362

Query: 232 QVTTLVRTMH-KDMKTALPIY----------------FNLYGEKGVARSNLGQYIGN 271
           +   L+  M  K    +L I+                F LY E  ++R N  Q +G+
Sbjct: 363 EAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKE--MSRINCQQLVGS 417



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 11/217 (5%)

Query: 27  PYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           P  S  +LIN L     P            +A  +F+EM+  GI+PT+ ++  LL     
Sbjct: 274 PAYSVLILINGLCKARRPG-----------EAKEMFQEMRGRGISPTVVTYNTLLEGLLS 322

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
           T  +     +   M      P+ F    +++   +  Q E+  ++L+AM    +   +  
Sbjct: 323 TAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKI 382

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + +L++   R G ++    L++ +     +  V +    L    R+       +  ++M 
Sbjct: 383 WEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMT 442

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           D G  PD  T   L+     + + +Q   LV  + +D
Sbjct: 443 DTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRD 479



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 4/189 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMK---SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
              A+ VFE+M   G  P  +   S ++L+    K     + + +  +M   G+ P    
Sbjct: 254 LQQAYEVFEKMAE-GPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVT 312

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N++L       + +   E+   M     A ++ TY ILI+   +   +E+   L  ++ 
Sbjct: 313 YNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMR 372

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            K   P +  W   L+  +R        E+++EM    C    G++ +L+        ++
Sbjct: 373 DKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVD 432

Query: 232 QVTTLVRTM 240
           +    ++ M
Sbjct: 433 EAKDFLKQM 441



 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/139 (17%), Positives = 62/139 (44%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P M ++ +L+++  KT  V +   +++ M   G  P   +   +L+   R G+ +   E
Sbjct: 342 APNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFE 401

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +   M + +    + + NIL++   R G +++ +   + +    + PD  T+   +    
Sbjct: 402 LYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLC 461

Query: 191 RKKLYRRCLEIFEEMIDAG 209
            +    +  ++ EE++  G
Sbjct: 462 WQGKADQARKLVEELVRDG 480


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 93/198 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM+  G TP+  ++  ++  Y K G +     V+ +M    L PD + +NS++
Sbjct: 137 EATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLI 196

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R G+ E   E+   M+K   A +  ++N +++  G+ G +         + A+ +K
Sbjct: 197 TAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIK 256

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ +T+ + +    R K      ++ +EM  AG  PD  T   +I A +    + +   +
Sbjct: 257 PNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEM 316

Query: 237 VRTMHKDMKTALPIYFNL 254
              M K   +A  + +NL
Sbjct: 317 FGDMEKAGCSANVVTYNL 334



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 88/192 (45%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F+E+ + G  P   ++  ++ +  K GNV     ++++M K+GL+PDT + N +L+  G+
Sbjct: 37  FQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGK 96

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
               ++  ++  +M+     AD  TY ILI   GR    E+   LF  +  +   P    
Sbjct: 97  ANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPA 156

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +T+ +  Y +       + + ++M+D    PD  T   LI+A S   + E    +   M 
Sbjct: 157 YTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMK 216

Query: 242 KDMKTALPIYFN 253
           K       + FN
Sbjct: 217 KSGVAVNTVSFN 228



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V ++M    + P   +   L+TA S+TG       +  +M KSG+  +T   N+ML+
Sbjct: 173 AMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLD 232

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G+ G+     + +  ME      +  T+N LIN  GR  +  +   + Q + +  L P
Sbjct: 233 CCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTP 292

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           DV T+T  + A+++     +  E+F +M  AGC  +  T  +LI A
Sbjct: 293 DVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDA 338



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE MK+ G+     S   +L    K G V      +++M   G+KP++   N+++N
Sbjct: 208 ACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLIN 267

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR     +  +VL  M       D+ TY  +I  + + G + K   +F  +       
Sbjct: 268 CLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSA 327

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           +VVT+   + A  +   Y+   +I+ +M   G  PD  TA VL
Sbjct: 328 NVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVL 370



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 54/103 (52%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y S+A+ V +EM+  G+TP + ++  ++ A++K GN+ K   +   M K+G   +    N
Sbjct: 274 YASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYN 333

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            +++   + G+++   ++   M+K     D  T  +L  + G+
Sbjct: 334 LLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVLQQLAGK 376



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 1/146 (0%)

Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
            V N+++  YGR  +  K+ +    ++K     +  TY  +I    + G +     L   
Sbjct: 15  LVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDK 74

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +    L+PD +     L    +  +     ++F  M   GC  D  T  +LI +     +
Sbjct: 75  MIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKR 134

Query: 230 IEQVTTLVRTMHKDMKT-ALPIYFNL 254
            E+ T L   M +   T + P Y N+
Sbjct: 135 DEEATLLFDEMEERGCTPSAPAYTNV 160


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 98/199 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +FE+M+  G+ P + ++   + A +  G   +   ++ ++   GL P+    +S
Sbjct: 189 WEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSS 248

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    + GQ++   ++L  M+    A +I TYN  I+   +GG  ++   L + +P   
Sbjct: 249 VITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVG 308

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PDVV+++S + A S+   ++  ++I  EM   G  P+  +    I AC+   Q ++  
Sbjct: 309 LPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAK 368

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+R M     T   I +N
Sbjct: 369 GLLREMPTAGVTQRVIGYN 387



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 1/184 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM   GI P  +S+   + A ++ G       ++ +M    + P+  + NS +N   + G
Sbjct: 93  EMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAG 152

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           Q+E    ++  M     A D+ +Y+  I+  GRGG  E+   LF+ +    + PDV+T+ 
Sbjct: 153 QWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYG 212

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           S +AA +    ++  + +  ++   G  P+  +   +I+AC+ E Q +    L+R M K 
Sbjct: 213 SAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREM-KA 271

Query: 244 MKTA 247
           M+ A
Sbjct: 272 MRLA 275



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +  EM   G  P + ++  ++ A +K G        + +M   G+ PD     +
Sbjct: 49  WEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGA 108

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +N   R G+++   ++L  M       ++  YN  IN   + G  E    L + +    
Sbjct: 109 AINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVG 168

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PDV++++S ++A  R   +   LE+FE+M  +G  PD  T    I+AC++  + ++  
Sbjct: 169 LAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAV 228

Query: 235 TLVRTM 240
           +L+R +
Sbjct: 229 SLLRKI 234



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 7/215 (3%)

Query: 33  MLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L     ++  PN+  +  +I        + +A  +  EM  +G+ P + S+  ++ A S
Sbjct: 265 LLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACS 324

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K     +   ++ +M   GL P+    NS ++   + GQ+++ + +L  M        + 
Sbjct: 325 KGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVI 384

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            YN  I    +G   ++   L + +P   L   V +++S + A  +  L+ +  E+  EM
Sbjct: 385 GYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREM 444

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              G  P+       I AC   DQ E+   L+R M
Sbjct: 445 ATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREM 479



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 99/215 (46%), Gaps = 7/215 (3%)

Query: 33  MLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L   L    TPN+ ++  +I        +  A ++ +EM  +G+ P + S+   ++A  
Sbjct: 125 LLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACG 184

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           + G   +   +   M  SG+ PD     S +      G++++   +L  +       ++ 
Sbjct: 185 RGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVI 244

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +Y+ +I    + G  +    L + + A RL P+++T+ + + A ++   ++  +++  EM
Sbjct: 245 SYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREM 304

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              G  PD  +   +I ACS  D+ ++   ++R M
Sbjct: 305 PTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREM 339



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +  EM   G+T  +  +   + A +K     +   ++ +M   GL    F  +S
Sbjct: 364 WKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSS 423

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++  G+   + K +E+L  M     A +   YN  I+  GRG   E+   L + +P   
Sbjct: 424 AIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVG 483

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PDV +++S +AA ++   ++  L + +EM  AG  PD       I ACS   + +   
Sbjct: 484 LSPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAV 543

Query: 235 TLVRTMH 241
            L+  M 
Sbjct: 544 ALLGEMR 550



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 76/171 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM  +G+ P    +   + A  +     +   ++ +M   GL PD F  +S + 
Sbjct: 437 AKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIA 496

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  Q+++   VL  M     A D+  YN  I+   +GG  +    L   + A  L P
Sbjct: 497 ACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTP 556

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
           ++++++S + A  R   ++  + + EEM  +G  PD  T   L+  C+  D
Sbjct: 557 NIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALMVTCAKYD 607



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 85/187 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +  EM  +G++P   S+   + A +K G   + +G++ +M  +G+       NS
Sbjct: 329 WKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNS 388

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +    +  Q+++   +L  M        + +Y+  I+  G+G    K + L + +    
Sbjct: 389 AIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVG 448

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+ V + S + A  R   +   +++  EM   G  PD  +    I+AC+  DQ ++  
Sbjct: 449 LAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEAL 508

Query: 235 TLVRTMH 241
            +++ M 
Sbjct: 509 AVLKEMS 515



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 8/217 (3%)

Query: 55  FSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  A    + MK+L G     KS+ + +TA  + G   +   ++ +M   G  PD    +
Sbjct: 13  WRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYS 72

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   + GQ++     L  M     A D  +Y   IN   RGG  +    L + + A+
Sbjct: 73  AVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLAR 132

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + P+V+ + S + + ++   +   + + +EM   G  PD  +    ISAC    + E+ 
Sbjct: 133 DVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEA 192

Query: 234 TTLVRTMHKDMKTA--LPIYFNLYGEKGVARSNLGQY 268
             L     +DM+T+   P     YG    A +N G++
Sbjct: 193 LEL----FEDMRTSGVAPDVIT-YGSAIAACANGGRW 224



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 94/191 (49%), Gaps = 10/191 (5%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A ++  ++  +G+TP + S+  ++TA +K G       ++ +M    L P+    N+
Sbjct: 224 WKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNA 283

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   + G++++  ++L  M       D+ +Y+ +I+   +G   ++   + + +P   
Sbjct: 284 AIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVG 343

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL-----ISACSSEDQ 229
           L P+ +++ S + A ++   ++    +  EM  AG      T +V+     I+AC+  +Q
Sbjct: 344 LSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGV-----TQRVIGYNSAIAACAKGEQ 398

Query: 230 IEQVTTLVRTM 240
            ++   L+R M
Sbjct: 399 WKEALALLREM 409



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 61/127 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +  EM  +G++P + S+   + A +K     +   V+ +M  +GL PD    NS
Sbjct: 469 WEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNS 528

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   + G+++    +L  M       +I +Y+  I+   RGG  ++   L + +    
Sbjct: 529 AIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSG 588

Query: 175 LKPDVVT 181
           + PDV+T
Sbjct: 589 VVPDVIT 595



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++F +  +I        + +A AV +EM   G+ P +  +   + A SK G       
Sbjct: 485 SPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVA 544

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           ++ +M  +GL P+    +S ++   R GQ+++   +L  M       D+ TY+ L+
Sbjct: 545 LLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALM 600


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 94/199 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   H V  +M   G TP ++ +  +L    K G++     ++++M   GLKP+    N+
Sbjct: 276 FERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNT 335

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L       ++E+ EE+L  M       D  T+NIL++ + + G + ++  L + +    
Sbjct: 336 VLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHG 395

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV+T+T+ +  + ++ L    + + + M   GC P+  +  +++    S ++     
Sbjct: 396 CVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAE 455

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M +   +  P+ FN
Sbjct: 456 DLMSQMIEQGCSPNPVTFN 474



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 74/172 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P + S+  +L          + + ++ +M + G  P+    N+++    R G FE++
Sbjct: 220 GCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERV 279

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            +VL  M       DI  Y  +++   + G +E    +   +P+  LKP+VV + + L  
Sbjct: 280 HQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKG 339

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
               + + +  E+  EM D  C  D  T  +L+        + +V  L+  M
Sbjct: 340 LCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQM 391



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 87/183 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +  +M   G +P   +   ++    K G V +   ++ QM  +G  PD    ++
Sbjct: 451 WVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYST 510

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G+ G+ ++  E+L  M     + +   Y+ + +   + G I ++  +F ++    
Sbjct: 511 VIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVT 570

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ D V + + +++  ++    R +E    M+ +GC P+  T  +LI   +SE  +++  
Sbjct: 571 IRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQ 630

Query: 235 TLV 237
            ++
Sbjct: 631 EML 633



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 80/176 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M   G  P + ++  ++  + K G + +   ++  M   G +P+T     +L    
Sbjct: 387 LLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLC 446

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              ++   E++++ M +   + +  T+N +IN   + G +E+   L + +      PD++
Sbjct: 447 SAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLI 506

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           ++++ +    +       LE+   M++ G  P+      + SA S E +I +V  +
Sbjct: 507 SYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQM 562



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 17/188 (9%)

Query: 55  FSDAHAVFEEMKRLGITPTMKS-HMLLLTAYSKTGNVA--KCEGVINQMHKSGLKPDTFV 111
            +DA +V +EM+R G  P     H++L  A S+ G         V+  +H  G   D   
Sbjct: 131 IADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGN 190

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEK--GSYAA--DISTYNILINIYGRGGFIEKMEGLF 167
            N +LN      Q   ++E L  +     S+    D+ +YN ++    +G  + K  G  
Sbjct: 191 CNLVLNAV--CDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVL----KGLCMAKRWGRV 244

Query: 168 QSLPAKRLK----PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           Q L  + ++    P+VVT+ + +    R  L+ R  ++  +M+D GC PD      ++  
Sbjct: 245 QDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDG 304

Query: 224 CSSEDQIE 231
              E  +E
Sbjct: 305 VCKEGHLE 312



 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/174 (17%), Positives = 72/174 (41%), Gaps = 7/174 (4%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRL-------GITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN   F   I F     + E+   L       G +P + S+  ++    K G   +   
Sbjct: 467 SPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALE 526

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++N M   G+ P+T + +S+ +   + G+  ++ ++   ++  +  +D   YN +I+   
Sbjct: 527 LLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLC 586

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           + G  ++       + +    P+  T+T  +   + +   +   E+  E+   G
Sbjct: 587 KRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 640


>gi|193848521|gb|ACF22711.1| PPR protein [Brachypodium distachyon]
          Length = 292

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EMK  G+ P + ++  L+  Y ++G   +    I  M   GLKP   + ++++N Y 
Sbjct: 120 MLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYA 179

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  +    V+ AM      A     N L+N +G    + +   + Q +    L+PDV+
Sbjct: 180 QRGLADHALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVI 239

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+T+ + A  R + + +   I+EEMI +GC PD     +L SA
Sbjct: 240 TYTTLMKALIRIEQFDKVPVIYEEMITSGCAPDRKARAMLRSA 282



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 90/199 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AV  EM   G+ P    + +++  + K   +       N+M + G++PD    N+
Sbjct: 9   WQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNT 68

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ ++  E+   M + +     +TYNI+IN+ G       +E +   +  + 
Sbjct: 69  LIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQG 128

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+++T+T+ +  Y R   ++  +E  E M   G  P       L++A +     +   
Sbjct: 129 LVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHAL 188

Query: 235 TLVRTMHKDMKTALPIYFN 253
            +V+ M  D   A  +  N
Sbjct: 189 NVVKAMRADGLEASTVVLN 207



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 3/217 (1%)

Query: 41  QHTPNLFVFIFSIYFSDAHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +H  N+ +  F  Y    HA+  F  M+  GI P + +   L+ A+ K G   +   +  
Sbjct: 28  RHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFE 87

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +S   P T   N M+NL G   ++  +E +L+ M++     +I TY  L+++YGR G
Sbjct: 88  EMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSG 147

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             ++     + + A  LKP    + + + AY+++ L    L + + M   G         
Sbjct: 148 RFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN 207

Query: 219 VLISACSSEDQIEQVTTLVRTMHK-DMKTALPIYFNL 254
            L++A   + ++ +  ++++ M + D++  +  Y  L
Sbjct: 208 SLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTL 244



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%)

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G ++K   VL  M       D   YN++I+ +G+   +      F  +  + ++PDVVTW
Sbjct: 7   GDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTW 66

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + + A+ +   + R +E+FEEM ++ C P   T  ++I+    +++   V T++  M +
Sbjct: 67  NTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKE 126



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 4/184 (2%)

Query: 82  TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141
             +   G+  K   V+ +MH SG++PD    N M++ +G+        +    M +    
Sbjct: 1   AGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIE 60

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            D+ T+N LI+ + +GG  ++   LF+ +      P   T+   +     ++ +     +
Sbjct: 61  PDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETM 120

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF----NLYGE 257
             EM + G  P+  T   L+       + ++    +  M  D     P  +    N Y +
Sbjct: 121 LSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQ 180

Query: 258 KGVA 261
           +G+A
Sbjct: 181 RGLA 184


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 103/211 (48%), Gaps = 19/211 (9%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITP-----TMKSHMLLLTAYSKTGNVAKCE------ 94
           L++++ S +  +AH  F  M  + +          + M+ LT      N++ C+      
Sbjct: 308 LYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTK----DNLSACQRGSEAL 363

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            + +++++SG+KPD F ++S+L++  R+   E+ E++     K  + +D+     LI++Y
Sbjct: 364 KIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMY 423

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G IE+    F  +  + +    + WTS +  +S+  + ++ L IFE+M  AG  P+ 
Sbjct: 424 NKCGSIERASKAFLEMSTRTM----IAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNT 479

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
            T   ++SACS    + Q       M K  K
Sbjct: 480 VTFVGVLSACSHAGMVSQALNYFEIMQKKYK 510



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           + L+N+Y + G +E    +F+++P +    +VV WT+ +  + +    +  + +F+EM+ 
Sbjct: 103 SFLVNVYAKCGNMEDARRVFENMPRR----NVVAWTTLMVGFVQNSQPKHAIHVFQEMLY 158

Query: 208 AGCYPDGGTAKVLISACSSEDQI---EQVTTLVRTMHKDMKTAL 248
           AG YP   T   ++ ACSS   +   +Q    +   H D  T++
Sbjct: 159 AGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSV 202



 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 18/202 (8%)

Query: 45  NLFV--FIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           N FV  F+ ++Y       DA  VFE M R  +     +   L+  + +         V 
Sbjct: 98  NFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVV----AWTTLMVGFVQNSQPKHAIHVF 153

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
            +M  +G  P  + ++++L+    L   +  ++    + K     D S  + L ++Y + 
Sbjct: 154 QEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKC 213

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G +E     F  +  K    +V++WTS ++A        + L +F EMI     P+  T 
Sbjct: 214 GRLEDALKAFSRIREK----NVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTL 269

Query: 218 KVLISACSSEDQIE---QVTTL 236
              +S C     +E   QV +L
Sbjct: 270 TSALSQCCEIPSLELGTQVCSL 291


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 90/185 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +F+EM++  ++P   ++  L+T++ K G   +    + QM +  +  D  + ++++ 
Sbjct: 153 AHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFWLQQMEQDRVSGDLVLYSNLIE 212

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           L  +L  + K   +   +++     D+  YN +IN++G+     +   L   +    + P
Sbjct: 213 LSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLP 272

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++++ L+ Y   + +   L +F EM +A C  D  T  ++I      D +++   L 
Sbjct: 273 DTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLF 332

Query: 238 RTMHK 242
            +M K
Sbjct: 333 WSMRK 337



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 98/188 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR GITP + ++  ++  + K     +   ++++M + G+ PDT   ++
Sbjct: 220 YSKAISIFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYST 279

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++Y    +F +   V   M + + + D+ T NI+I++YG+   +++ + LF S+    
Sbjct: 280 LLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMG 339

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VV++ + L  Y   +L+   + +F  M       +  T   +I       + E+ T
Sbjct: 340 IEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKAT 399

Query: 235 TLVRTMHK 242
            LV+ M K
Sbjct: 400 NLVQEMQK 407



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 96/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A  +  EM+ +G+ P   S+  LL+ Y +     +   V  
Sbjct: 239 LVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFA 298

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M+++    D    N M+++YG+L   ++ + +  +M K     ++ +YN L+ +YG   
Sbjct: 299 EMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAE 358

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ + +  Y +   + +   + +EM   G  P+  T  
Sbjct: 359 LFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYS 418

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 419 TIISIWGKAGKLDRAAMLFQKLR 441



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 87/182 (47%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y +     +   +   M +  ++ +    N+M+
Sbjct: 327 EADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMI 386

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+K     +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 387 KIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVE 446

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  ++      P     K+L  A     +IE+ T +
Sbjct: 447 IDQVLYQTMIVAYERAGLVAHAKRLLHDLKCPDIIPRDTAIKILARAG----RIEEATWV 502

Query: 237 VR 238
            R
Sbjct: 503 FR 504



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 88/178 (49%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V++ +  F +A +VF EM     +  + +  +++  Y +   V + + +   M K G+
Sbjct: 281 LSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGI 340

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+    N++L +YG    F +   +   M++     ++ TYN +I IYG+    EK   
Sbjct: 341 EPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATN 400

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 401 LVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 458



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 92/193 (47%), Gaps = 6/193 (3%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S+    A  + +EM++ GI P   ++  +++ + K G + +   +  ++  SG++ D  +
Sbjct: 392 SLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVL 451

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSL 170
             +M+  Y R G     + +L  ++      DI   +  I I  R G IE+   +F Q+ 
Sbjct: 452 YQTMIVAYERAGLVAHAKRLLHDLK----CPDIIPRDTAIKILARAGRIEEATWVFRQAF 507

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            A  +K D+  +   +  +SR K     +E+FE+M  AG +PD     ++++A     + 
Sbjct: 508 DAGEVK-DISVFRCMIELFSRNKRPANVVEVFEKMRGAGYFPDSDVIALVLNAYGKLREF 566

Query: 231 EQVTTLVRTMHKD 243
           E+   + R M ++
Sbjct: 567 EKADAVYREMQEE 579



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 90/192 (46%), Gaps = 6/192 (3%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           +P++ ++ ++L    +        G+ ++M +  L PD +  ++++  +G+ G F++   
Sbjct: 131 SPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLF 190

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
            L  ME+   + D+  Y+ LI +  +     K   +F  L    + PD+V + S +  + 
Sbjct: 191 WLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFG 250

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-----DMK 245
           + +L+R    +  EM + G  PD  +   L+S     ++  +  ++   M++     D+ 
Sbjct: 251 KARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLM 310

Query: 246 TALPIYFNLYGE 257
           T   I  ++YG+
Sbjct: 311 TC-NIMIDVYGQ 321



 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 2/117 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF +    G    +     ++  +S+    A    V  +M  +G  PD+ VI  +L
Sbjct: 498 EATWVFRQAFDAGEVKDISVFRCMIELFSRNKRPANVVEVFEKMRGAGYFPDSDVIALVL 557

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPA 172
           N YG+L +FEK + V   M++         +  ++++YG R  FI  +E LF+ L +
Sbjct: 558 NAYGKLREFEKADAVYREMQEEECVFPDEVHFQMLSLYGARKDFI-MVESLFEKLDS 613



 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 74/178 (41%), Gaps = 12/178 (6%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN   +  I SI+        A  +F++++  G+      +  ++ AY + G VA  + +
Sbjct: 412 PNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRL 471

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++ +      PD    ++ + +  R G+ E+   V           DIS +  +I ++ R
Sbjct: 472 LHDLKC----PDIIPRDTAIKILARAGRIEEATWVFRQAFDAGEVKDISVFRCMIELFSR 527

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-YPD 213
                 +  +F+ +      PD       L AY + + + +   ++ EM +  C +PD
Sbjct: 528 NKRPANVVEVFEKMRGAGYFPDSDVIALVLNAYGKLREFEKADAVYREMQEEECVFPD 585


>gi|356540106|ref|XP_003538531.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
           chloroplastic-like [Glycine max]
          Length = 506

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 88/164 (53%), Gaps = 1/164 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA +  ++MK  GI P++ ++  ++   S+ G  +     I++M +SGL+ D+   + ++
Sbjct: 153 DALSALQDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLI 212

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG+   +++M E +  ME    + D  TYNILI  Y  GG +++ME L+Q + +KR+ 
Sbjct: 213 GAYGKFQMYDEMGECVKKMELEGCSPDPITYNILIQEYAGGGLLQRMEKLYQRMLSKRMH 272

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKV 219
               T  + L AY+   +  +  + + +++++  C  D    KV
Sbjct: 273 VKSSTLVAMLEAYTTFGMVEKMEKFYRKILNSKTCIEDDLIRKV 316



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/153 (18%), Positives = 65/153 (42%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G +      +  M   G+KP     N +++   R G+F      +  M++     D  TY
Sbjct: 149 GKMKDALSALQDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMKESGLELDSETY 208

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           + LI  YG+    ++M    + +  +   PD +T+   +  Y+   L +R  ++++ M+ 
Sbjct: 209 DGLIGAYGKFQMYDEMGECVKKMELEGCSPDPITYNILIQEYAGGGLLQRMEKLYQRMLS 268

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              +    T   ++ A ++   +E++    R +
Sbjct: 269 KRMHVKSSTLVAMLEAYTTFGMVEKMEKFYRKI 301



 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 48/108 (44%)

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           YN +I +   GG ++      Q +  + +KP + T+   +   SR+  +   L   +EM 
Sbjct: 138 YNKIIGLLCEGGKMKDALSALQDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMK 197

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           ++G   D  T   LI A       +++   V+ M  +  +  PI +N+
Sbjct: 198 ESGLELDSETYDGLIGAYGKFQMYDEMGECVKKMELEGCSPDPITYNI 245



 Score = 37.0 bits (84), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 53/131 (40%)

Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
           F  N ++ L    G+ +     L  M+       + TYN +I+   R G           
Sbjct: 136 FNYNKIIGLLCEGGKMKDALSALQDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDE 195

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +    L+ D  T+   + AY + ++Y    E  ++M   GC PD  T  +LI   +    
Sbjct: 196 MKESGLELDSETYDGLIGAYGKFQMYDEMGECVKKMELEGCSPDPITYNILIQEYAGGGL 255

Query: 230 IEQVTTLVRTM 240
           ++++  L + M
Sbjct: 256 LQRMEKLYQRM 266


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 82/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A A FE++K  G  P + ++  LL  + K GN  +   V+ +M  +G KPD    N +
Sbjct: 271 DEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNEL 330

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
              Y R G +++  + +  M       +  TYN ++  YG  G +++   LF  +     
Sbjct: 331 AGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGF 390

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P   T+   L    +K  +   LE+  EM  +GC P+  T   L++ C        VT 
Sbjct: 391 IPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTR 450

Query: 236 LVRTM 240
           ++  M
Sbjct: 451 VLEGM 455



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 94/190 (49%), Gaps = 1/190 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           +  A  +F+E++R G+ PT  ++ ++L  Y + G +  +   ++  M  +G++PD F  +
Sbjct: 199 YERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAAGVEPDGFTAS 258

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++   GR G  ++       ++   +A  + TYN L+ ++G+ G   +   + + +   
Sbjct: 259 TVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDA 318

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KPD VT+     +Y+R   Y+   +  + MI  G  P+  T   +++A  +  ++++ 
Sbjct: 319 GCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEA 378

Query: 234 TTLVRTMHKD 243
             L   M K+
Sbjct: 379 LALFDRMKKN 388



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 1/173 (0%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEK 127
           G    ++++  +L A S+ G   +   + +++ + G+ P     N +L++YGR+G+ + +
Sbjct: 178 GARLDVRAYTTVLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPR 237

Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
           +  +L  M       D  T + +I   GR G +++    F+ L A+   P VVT+ + L 
Sbjct: 238 VVALLADMRAAGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQ 297

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + +   Y   L +  EM DAGC PD  T   L  + +     ++    + TM
Sbjct: 298 VFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTM 350



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 44/230 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----------- 103
           ++ A ++  +MK  G  P   S+ LLL  ++K GN A  E +  ++++            
Sbjct: 515 WTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRT 574

Query: 104 ------------------------GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                                   G KPD  ++NSML++Y + G + K  E+  ++E+  
Sbjct: 575 LVIANFKCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLG 634

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSL---------PAKRLKPDVVTWTSRLAAYS 190
            + D+ TYN L+++Y +     + E +   L           ++LKPDVV++ + +  + 
Sbjct: 635 LSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFC 694

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ L +    +  EMI  G  P   T   L+   +S +   +   +V  M
Sbjct: 695 KEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVVGYM 744



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +++EM   G  P + ++  LL   S+ G+      ++++M   G KP+    + +
Sbjct: 481 ANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLL 540

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF----IEKMEGLFQSLP 171
           L  + + G    +E    A+EK  Y  +I    +++       F    +E +E  FQ + 
Sbjct: 541 LQCHAKGGNAAGIE----AIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIERAFQEVK 596

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           A+  KPD+V   S L+ Y++  LY + +E+FE +   G  PD
Sbjct: 597 ARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPD 638



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 74/160 (46%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  +++A  V  EM+  G  P   ++  L  +Y++ G   +    I+ M   GL
Sbjct: 296 LQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGL 355

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+TF  N+++  YG  G+ ++   +   M+K  +    +TYN+++ + G+      M  
Sbjct: 356 LPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLE 415

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +   +      P+ VTW + LA   ++ +      + E M
Sbjct: 416 MLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGM 455



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 87/190 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++ +A    + M   G+ P   ++  ++TAY   G V +   + ++M K+G  P T   N
Sbjct: 339 FYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYN 398

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L + G+  +F  M E+L  M +     +  T+N L+ + G+ G    +  + + + + 
Sbjct: 399 LVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSC 458

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           +++    T+ + + AY R        ++++EM  AG  P   T   L++  S +      
Sbjct: 459 KVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAA 518

Query: 234 TTLVRTMHKD 243
            ++V  M  +
Sbjct: 519 RSIVSKMKSE 528



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 89/188 (47%), Gaps = 16/188 (8%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P+L +   + SIY     +S A  +FE +++LG++P + ++  L+  Y+K+    + E
Sbjct: 600 HKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAE 659

Query: 95  GVINQMHKSG---------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
            ++N++  S          LKPD    N+++N + + G  ++ + VL+ M     A  + 
Sbjct: 660 KILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVI 719

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TY+ L+  Y       +   +   +  ++LKP  +T+   + +Y R K Y    +    +
Sbjct: 720 TYHTLVGGYASREMFAEAREVVGYMIQRKLKPMELTYRRVVDSYCRAKRYEDARDFLAVV 779

Query: 206 IDAGCYPD 213
            +A    D
Sbjct: 780 AEADTNSD 787



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 7/185 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F +  I + Y       +A A+F+ MK+ G  P   ++ L+L    K    A    +
Sbjct: 357 PNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEM 416

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M +SG  P+    N++L + G+ G    +  VL  M+         TYN LI  YGR
Sbjct: 417 LGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYGR 476

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G       ++  + A    P + T+ + L   SR+  +     I  +M   G  P+  +
Sbjct: 477 CGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMS 536

Query: 217 AKVLI 221
             +L+
Sbjct: 537 YSLLL 541



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 76/161 (47%), Gaps = 9/161 (5%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F+E+K  G  P +     +L+ Y+K G  +K   +   + + GL PD    NS++++Y 
Sbjct: 591 AFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYA 650

Query: 121 RLGQFEKMEEVLTAMEKGSYAA---------DISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +  +  + E++L  +                D+ +YN +IN + + G I++ + +   + 
Sbjct: 651 KSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEMI 710

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           A  + P V+T+ + +  Y+ ++++    E+   MI     P
Sbjct: 711 ADGVAPCVITYHTLVGGYASREMFAEAREVVGYMIQRKLKP 751


>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 367

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 1/190 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           F  A  ++E+M   GI     +   LL+   KT   V   E + +++ ++G+ P     N
Sbjct: 61  FKKAWRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYN 120

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L++  R G  E+ +E+   M++     +I T+N L+ ++ +GG +++   ++Q +   
Sbjct: 121 TLLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDA 180

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            LKP VVT+T  +  Y R   ++  +E+F EM   GC PD     ++IS        E+ 
Sbjct: 181 GLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEA 240

Query: 234 TTLVRTMHKD 243
             + R +  D
Sbjct: 241 ALVFRQLQND 250



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 83/178 (46%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+RL + P + +   LL  + + G + +   V  ++  +GLKP       ++ +Y R  
Sbjct: 141 EMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRAS 200

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           + ++  EV   M +     D+  Y+++I++YG+ G  E+   +F+ L      P+VVTW 
Sbjct: 201 KHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWC 260

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             + A+  +   +     F EM+ +GC PD     V++ A        Q   L R M 
Sbjct: 261 CLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQ 318



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 79/164 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF EM+R+G  P +  + L+++ Y K G+  +   V  Q+   G  P+      ++
Sbjct: 204 EAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCLI 263

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +G  G+ +++      M       D++ YN+++  YGR G   +   LF+ + A+ + 
Sbjct: 264 QAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQAQGIS 323

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           P+ V++ + + AY   K       + ++M  AG  PD  +  +L
Sbjct: 324 PNAVSYDTMIQAYCHSKQAADAQIVLDQMTRAGFSPDRSSRAML 367



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 8/202 (3%)

Query: 35  INFLLLQHTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           I    L+  PN+  F       +      +A  V++ +   G+ PT+ ++  L+  Y + 
Sbjct: 140 IEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRA 199

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
               +   V  +M + G KPD  + + M+++YG+ G  E+   V   ++   Y  ++ T+
Sbjct: 200 SKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTW 259

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
             LI  +G  G ++++   F  + A    PD+  +   + AY R     +   +F  M  
Sbjct: 260 CCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQA 319

Query: 208 AGCYPDGGTAKVLISA-CSSED 228
            G  P+  +   +I A C S+ 
Sbjct: 320 QGISPNAVSYDTMIQAYCHSKQ 341



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 49/89 (55%)

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           ++KG    +  TY +++ + GR G   +   LF  + +  ++  + ++ S + AY+RK L
Sbjct: 1   VQKGRLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGL 60

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +++   ++E+M+++G   D  T   L+S 
Sbjct: 61  FKKAWRMYEDMVESGIQADEITLSTLLSG 89


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 86/162 (53%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F++M   G  PT+ ++ +++    K G+V    G+  +M   GL PDT   NSM++ +G+
Sbjct: 83  FKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGK 142

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G+ +        M+      D+ TYN LIN + + G + K    F+ +    LKP+VV+
Sbjct: 143 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVS 202

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +++ + A+ ++ + ++ ++ + +M   G  P+  T   LI A
Sbjct: 203 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 244



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 5/202 (2%)

Query: 46  LFVFIFSIYFS-----DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           +F  +FS+        +A   F +MKR  + P  +S   LL  ++K G     +     M
Sbjct: 27  VFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDM 86

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             +G KP  F  N M++   + G  E    +   M+      D  TYN +I+ +G+ G +
Sbjct: 87  IGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRL 146

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           +     F+ +     +PDV+T+ + +  + +     + LE F EM   G  P+  +   L
Sbjct: 147 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTL 206

Query: 221 ISACSSEDQIEQVTTLVRTMHK 242
           + A   E  ++Q       M +
Sbjct: 207 VDAFCKEGMMQQAIKFYVDMRR 228



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEMK  G+ P   ++  ++  + K G +        +M     +PD    N+++N
Sbjct: 114 ARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 173

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+  K  E    M++     ++ +Y+ L++ + + G +++    +  +    L P
Sbjct: 174 CFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVP 233

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTL 236
           +  T+TS + AY +         +  EM+  G   +  T   LI   C  E+  E +  L
Sbjct: 234 NEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLL 293

Query: 237 VRTMHKDMKTALPIY 251
              +  D+K  +  +
Sbjct: 294 DEMVELDIKVTVVTF 308



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 70/153 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D    FEEMK +   P + ++  L+  + K G + K      +M ++GLKP+    ++
Sbjct: 146 LDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYST 205

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G  ++  +    M +     +  TY  LI+ Y + G +     L   +    
Sbjct: 206 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVG 265

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           ++ +VVT+T+ +      +     L + +EM++
Sbjct: 266 VEWNVVTYTALIDGLCGWENPTEGLHLLDEMVE 298



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 1/154 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLY 119
           + +EM  L I  T+ +  +L+    K   V+K      ++    GL+ +  +  +M++  
Sbjct: 292 LLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGL 351

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +  Q E    +   M +     D + Y  L++   + G + +   L   +    +K D+
Sbjct: 352 CKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDL 411

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + +TS +   S     ++     EEMI  G +PD
Sbjct: 412 LAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 445



 Score = 37.4 bits (85), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE+M + G+ P   ++  L+    K GNV +   + ++M ++G+K D     S++ 
Sbjct: 360 ATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVW 419

Query: 118 LYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKME 164
                 Q +K    L  M  +G +  ++   ++L   Y  G   E +E
Sbjct: 420 GLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCINEAVE 467


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 1/186 (0%)

Query: 57  DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           DA    +EM  + G  P   +   L+    K G+V     +++ M + G  PD +  NS+
Sbjct: 277 DALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV 336

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +LG+ ++  EVL  M     + +  TYN LI+   +   +E+   L + L +K +
Sbjct: 337 ISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+ S +      + +R  +E+FEEM   GC PD  T  +LI +  S+ ++++   
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 236 LVRTMH 241
           +++ M 
Sbjct: 457 MLKQME 462



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 84/184 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEM+  G  P   ++ +L+ +    G + +   ++ QM  SG        N++++
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  +  + EE+   ME    + +  TYN LI+   +   +E    L   +  +  KP
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+ S L  + R    ++  +I + M   GC PD  T   LIS      ++E  + L+
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598

Query: 238 RTMH 241
           R++ 
Sbjct: 599 RSIQ 602



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM+  G++    ++  L+    K+  V     +++QM   G KPD +  NS+L
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLL 547

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R G  +K  +++ AM       DI TY  LI+   + G +E    L +S+  K + 
Sbjct: 548 THFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIN 607

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISA-CSSEDQI-EQV 233
                +   +    RK+     + +F EM++     PD  + +++    C+    I E V
Sbjct: 608 LTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAV 667

Query: 234 TTLVRTMHKDMKTALPIYFNLY 255
             LV  + K     +P + +LY
Sbjct: 668 DFLVELLEKGF---VPEFSSLY 686



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 1/187 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           F D   + E+MK         + ++L+ +Y++     +   V++ M  + GLKPDT   N
Sbjct: 99  FDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYN 158

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            MLNL       + +E     M       D+ST+N+LI    R   +     + + +P+ 
Sbjct: 159 RMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY 218

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD  T+T+ +  Y  +      L I E+M++ GC     +  V++     E ++E  
Sbjct: 219 GLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDA 278

Query: 234 TTLVRTM 240
              ++ M
Sbjct: 279 LNFIQEM 285



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/137 (18%), Positives = 67/137 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + ++M+  G   ++ ++  L+  + K     + E + ++M   G+  ++   N+
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  + E   +++  M       D  TYN L+  + RGG I+K   + Q++ +  
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query: 175 LKPDVVTWTSRLAAYSR 191
            +PD+VT+ + ++   +
Sbjct: 571 CEPDIVTYGTLISGLCK 587


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 86/189 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  +F+EM   G  P   +   L+  + + GN+ K   +   M +  +KPD    N+
Sbjct: 344 LTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNT 403

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + ++G+ EK  E+   M       +  TY ILIN Y   G + +   L+  +  K 
Sbjct: 404 LIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKG 463

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP +VT  + +  Y R     +  E    MI  G  PD  +   LI+    ED +++  
Sbjct: 464 IKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAF 523

Query: 235 TLVRTMHKD 243
             +  M K+
Sbjct: 524 LWINKMEKE 532



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 3/181 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F D  +   EM+  GI   M ++  L+ AY + G + +   ++N M   GLKP  F  N+
Sbjct: 134 FDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNA 193

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN-ILINIYGRGGFIEKMEGLFQSLPAK 173
           ++N   + G++ + + +L  M     + D +TYN +L+    R  F E  E +F  +  +
Sbjct: 194 IINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKE-IFGEMLRQ 252

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQ 232
            + PD+V+++S +A +SR +   + L  F +M   G  PD     VL+   C + + +E 
Sbjct: 253 GVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEA 312

Query: 233 V 233
           +
Sbjct: 313 L 313



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 82/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  E+ R GI   + +  +++ A  K G     +  +++M  +G+  D    N+++ 
Sbjct: 102 AWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIG 161

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  E+  E++ +M        + TYN +IN   + G   + +G+   +    L P
Sbjct: 162 AYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSP 221

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+ + L    R+  +    EIF EM+  G  PD  +   LI+  S    ++Q     
Sbjct: 222 DTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYF 281

Query: 238 RTMHK 242
           R M K
Sbjct: 282 RDMKK 286



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 81/160 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + S+A  +++ M   GI PT+ +   ++  Y ++G+ +K +  + +M   G+ PD    N
Sbjct: 448 HVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYN 507

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N + R    +K    +  MEK     DI TYN+++N + R G +++ E + + +  K
Sbjct: 508 TLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEK 567

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            + PD  T+T+ +  +  +          +EM+  G  PD
Sbjct: 568 GINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPD 607



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 90/198 (45%), Gaps = 2/198 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +   M   G+ P++ ++  ++    K G  A+ +G++ +M   GL PDT   N+
Sbjct: 169 LEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNT 228

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    R   F + +E+   M +     D+ +++ LI ++ R   +++    F+ +    
Sbjct: 229 LLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFG 288

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD V +T  +  Y R       L+I +EM++ GC  D      +++    E  +    
Sbjct: 289 LVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDAD 348

Query: 235 TLVRTMHKDMKTALPIYF 252
            L   M +  + ALP ++
Sbjct: 349 KLFDEMVE--RGALPDFY 364



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 83/175 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++ M    I P   ++ +L+ AY   G+V++   + + M + G+KP     N+++ 
Sbjct: 417 ASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIK 476

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K +E L  M     A D  +YN LIN + R   ++K       +  + L P
Sbjct: 477 GYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLP 536

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           D++T+   +  + R+   +    +  +MI+ G  PD  T   LI+   ++D + +
Sbjct: 537 DIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNE 591



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 93/202 (46%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+  +  + VF  + +   A   F +MK+ G+ P    + +L+  Y + GN+ +   + +
Sbjct: 258 LVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRD 317

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M + G   D    N++LN   +       +++   M +     D  T+  LI+ + + G
Sbjct: 318 EMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDG 377

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            + K   LF ++  + +KPD+V + + +  + +     +  E+++ MI    +P+  T  
Sbjct: 378 NMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYG 437

Query: 219 VLISACSSEDQIEQVTTLVRTM 240
           +LI+A  S   + +   L   M
Sbjct: 438 ILINAYCSVGHVSEAFRLWDVM 459



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS+A  +F EM R G+ P + S   L+  +S+  ++ +       M K GL PD  +   
Sbjct: 239 FSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 298

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R G   +  ++   M +     D+  YN ++N   +   +   + LF  +  + 
Sbjct: 299 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 358

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD  T+T+ +  + +     + L +F  M      PD      LI       ++E+ +
Sbjct: 359 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKAS 418

Query: 235 TL 236
            L
Sbjct: 419 EL 420



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 18/194 (9%)

Query: 48  VFIFSIYFSDAHAVFEEM------KRLGITPTMKSHM------------LLLTAYSKTGN 89
           VF+ S   SDA A+   M       R+ +   + S M            LL+  Y +   
Sbjct: 4   VFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQARK 63

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           + +       +   G        NS+L    ++   E   EV   + +     ++ T NI
Sbjct: 64  LREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNI 123

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           ++N   + G  + ++     +    +  D+VT+ + + AY R+ L     EI   M D G
Sbjct: 124 MVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKG 183

Query: 210 CYPDGGTAKVLISA 223
             P   T   +I+ 
Sbjct: 184 LKPSLFTYNAIING 197


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 92/188 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + E+MK +G+ PT  ++  L+  Y   G++ K  G  ++M +  + P     N 
Sbjct: 322 LEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNL 381

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++     G+ ++ + ++  M       D  TYNILIN Y R G  +K   L   + +K 
Sbjct: 382 LIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKG 441

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P +VT+TS +   S++   +   ++FE++I  G  PD      LI    +   +++  
Sbjct: 442 IQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAF 501

Query: 235 TLVRTMHK 242
            L++ M K
Sbjct: 502 ALLKEMDK 509



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 12/208 (5%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           ML  FL L  T  ++V             + EM RL I  T+ +  +++    K G + K
Sbjct: 207 MLSLFLKLNQTETVWVL------------YAEMFRLKIKSTVYTFNIMINVLCKEGKLKK 254

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            +  I  M   G+KP+    N++++ Y   G+ E    VL  M+      D  TY  LI+
Sbjct: 255 AKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLIS 314

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              +GG +E+  G+ + +    L P  VT+ + +  Y  K    +     +EM+     P
Sbjct: 315 GMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILP 374

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
              T  +LI A   E ++++   +++ M
Sbjct: 375 TVSTYNLLIHALFLEGKMDEADGMIKDM 402



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 1/198 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   GI PT+ ++  L+   SK   +   + +  ++ + G  PD  + N++++
Sbjct: 430 AFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALID 489

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  ++   +L  M+K +   D  TYN L+    R G +E+   L + +  + ++P
Sbjct: 490 GHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRP 549

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +++ + ++ YS++        I +EM+  G  P   T   LI       Q +    L+
Sbjct: 550 DHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELL 609

Query: 238 RTM-HKDMKTALPIYFNL 254
           + M  K +      YF+L
Sbjct: 610 KEMVSKGITPDDSTYFSL 627



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 94/210 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V + MK  G+ P   ++  L++   K G + +  G++ +M + GL P     N++++
Sbjct: 290 ARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLID 349

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G   K       M + +    +STYN+LI+     G +++ +G+ + +    + P
Sbjct: 350 GYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVP 409

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+   +  Y R    ++   + +EMI  G  P   T   LI   S  ++++    L 
Sbjct: 410 DSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLF 469

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
             + ++  +   I FN   +   A  NL +
Sbjct: 470 EKIIREGASPDLIMFNALIDGHCANGNLDR 499



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 82/180 (45%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +EM R  I PT+ ++ LL+ A    G + + +G+I  M  SG+ PD+   N ++N Y R 
Sbjct: 365 DEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRC 424

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  +K   +   M        + TY  LI +  +   ++  + LF+ +  +   PD++ +
Sbjct: 425 GNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMF 484

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + +  +       R   + +EM      PD  T   L+     E ++E+   L++ M +
Sbjct: 485 NALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKR 544



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 86/196 (43%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +T  ++V         A  +FE++ R G +P +     L+  +   GN+ +   ++ 
Sbjct: 446 LVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLK 505

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M K  + PD    N+++    R G+ E+  E+L  M++     D  +YN LI+ Y + G
Sbjct: 506 EMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRG 565

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            I     +   + +    P ++T+ + +    + +      E+ +EM+  G  PD  T  
Sbjct: 566 DINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYF 625

Query: 219 VLISACSSEDQIEQVT 234
            LI      D   + +
Sbjct: 626 SLIEGIGKVDDSSEAS 641



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + ++M   GI P   ++ +L+  Y + GN  K   + ++M   G++P      S
Sbjct: 392 MDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTS 451

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +  +  + +  +++   + +   + D+  +N LI+ +   G +++   L + +  + 
Sbjct: 452 LIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRN 511

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD VT+ + +    R+       E+ +EM   G  PD  +   LIS  S    I    
Sbjct: 512 IVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAF 571

Query: 235 TLVRTM 240
           T+   M
Sbjct: 572 TIRDEM 577



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 1/177 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F+ MK  G+ P +++   +L+ + K         +  +M +  +K   +  N M
Sbjct: 183 DDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIM 242

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N+  + G+ +K ++ + +ME      ++ TYN +I+ Y   G +E    +   +  + +
Sbjct: 243 INVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGV 302

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
           +PD  T+ S ++   +         I E+M + G  P   T   LI   C+  D ++
Sbjct: 303 EPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVK 359



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 9/186 (4%)

Query: 61  VFEEM----KRLGITPTMKSHMLLLTAYS-KTGNVA-KCEGVINQMHKSGLKPDTFVINS 114
           VF E+     RLG   ++   ML+      K G+ A +C    + M + G+ P     N+
Sbjct: 150 VFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFEC---FDMMKEKGVVPKIETFNA 206

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+L+ +L Q E +  +   M +    + + T+NI+IN+  + G ++K +    S+    
Sbjct: 207 MLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLG 266

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP+VVT+ + +  Y  +        + + M + G  PD  T   LIS      ++E+ +
Sbjct: 267 VKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEAS 326

Query: 235 TLVRTM 240
            ++  M
Sbjct: 327 GILEKM 332


>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 456

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 36/173 (20%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV-INQMHKSGLKPDTFVIN 113
           F+ A  +  +M   GI P   ++   + AY K    A+ E + ++ ++  G KPD + +N
Sbjct: 187 FNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMN 246

Query: 114 SMLNLYGRLGQ-----------------------------------FEKMEEVLTAMEKG 138
           S L  +GR GQ                                   +EKM  V+  M+K 
Sbjct: 247 STLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKY 306

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            Y+  I TYNI+I+ +GR G +++ME LF+ + ++R+KP  VT  S + AY +
Sbjct: 307 HYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQ 359



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPD----TFVI 112
           A+ +F+EM   G   + +S+  LL+AYS++G + +   ++N+M  S   +PD    + +I
Sbjct: 119 AYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPDCQPDVHTYSILI 178

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLP 171
            S L ++     F K + +L+ M       +  TYN  I+ YG+     +ME  L   L 
Sbjct: 179 KSCLQVFA----FNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESILVDMLN 234

Query: 172 AKRLKPDVVTWTSRLAAYSRK---KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
               KPDV T  S L A+ R    +   +C E F+E   AG  P   T  +L+ +    +
Sbjct: 235 DDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQE---AGIQPSIQTFNILLDSYGKAE 291

Query: 229 QIEQVTTLVRTMHK 242
             E+++ ++  M K
Sbjct: 292 SYEKMSAVMEYMQK 305



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +    AV E M++   + T+ ++ +++ A+ + GN+ + E +   M    +KP    + S
Sbjct: 293 YEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCS 352

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  YG+ G+ EK++ VL  +E      D   YN L++ YGR     +M+ +   +  + 
Sbjct: 353 LVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRG 412

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
            KPD  T+ +   AYS   +     EI E
Sbjct: 413 CKPDKTTYRTMARAYSDGGMANHAKEIQE 441



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 3/188 (1%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +E+ +  GI P++++  +LL +Y K  +  K   V+  M K          N +++ +GR
Sbjct: 265 YEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 324

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++ME +   M          T   L+  YG+ G  EK++ +   +    +  D V 
Sbjct: 325 AGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVF 384

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS---EDQIEQVTTLVR 238
           +   + AY R + +    ++   M   GC PD  T + +  A S     +  +++  L+ 
Sbjct: 385 YNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDGGMANHAKEIQELIT 444

Query: 239 TMHKDMKT 246
           T     +T
Sbjct: 445 TAEPSKRT 452



 Score = 38.1 bits (87), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           Y  LI + G+    EK   LFQ +  +  +    ++T+ L+AYSR  L      I  EM 
Sbjct: 103 YIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMK 162

Query: 207 DA-GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++  C PD  T  +LI +C       +  TL+  M
Sbjct: 163 NSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDM 197


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 92/183 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F++M+  G  P + ++ +L+ +  K   V +   + + M    + PD F  NS++ 
Sbjct: 219 AAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQ 278

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 ++++   +L  M   +   +I T+N+L++   + G + + +G+F+++    ++P
Sbjct: 279 GLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEP 338

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT++S +  YS +       ++F+ MI  GC PD  +  +LI       +I++   L 
Sbjct: 339 DVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLF 398

Query: 238 RTM 240
             M
Sbjct: 399 NEM 401



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +VF +M +LG+ P   +   L+    K G  A+     +    SG +P  +   +++N
Sbjct: 149 AFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIIN 208

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G+      +   ME+     ++ TYNILI+   +   + +   +F  + AKR+ P
Sbjct: 209 GLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISP 268

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ S +      + ++    +  EM      P+  T  VL+ A   E ++ +   + 
Sbjct: 269 DIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVF 328

Query: 238 RTM 240
           +TM
Sbjct: 329 KTM 331



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A A+  EM  L I P + +  +L+ A  K G V++ +GV   M + G++PD    +S
Sbjct: 286 WKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSS 345

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y    +  +  ++  AM       D  +YNILI  Y +   I++ + LF  +  + 
Sbjct: 346 LMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQG 405

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD V + + +    +    R   ++F+ M   G  PD  T  +L+     E  + +  
Sbjct: 406 LTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAF 465

Query: 235 TLVRTMH 241
            L R M 
Sbjct: 466 RLFRVMQ 472



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F EM   G+TP   ++  L+    + G + + + +   MH +G  PD F  + +
Sbjct: 392 DEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSML 451

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ + + G   K   +   M+      DI+ YNILI+   + G ++    LF  L  + L
Sbjct: 452 LDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGL 511

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            P+V  +T+ +    ++ L    LE F  M   GC PD  +  V+I
Sbjct: 512 LPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVII 557



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 88/187 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ M   G  P   S+ +L+  Y K   + + + + N+M   GL PD    N+++
Sbjct: 358 EARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLI 417

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +LG+  + +++   M       D+ TY++L++ + + G++ K   LF+ + +  LK
Sbjct: 418 HGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLK 477

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+  +   + A  +    +   ++F E+   G  P+      +I+    E  +++    
Sbjct: 478 PDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEA 537

Query: 237 VRTMHKD 243
            R M  D
Sbjct: 538 FRNMEGD 544



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 5/202 (2%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y+    ++ ++M+  G++P + +  +L+  +S    V     V ++M K GL+PD    N
Sbjct: 110 YYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFN 169

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N   ++G+F +  E     E       + TY  +IN   + G      GLF+ +   
Sbjct: 170 TLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEA 229

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +P+VVT+   + +  + KL    L+IF  M      PD  T   LI    +  + ++ 
Sbjct: 230 GCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEA 289

Query: 234 TTLVRTMHKDMKTALPIYFNLY 255
           + L+  M     T+L I  N++
Sbjct: 290 SALLNEM-----TSLNIMPNIF 306



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 7/191 (3%)

Query: 40  LQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           L   PN+F F   +         S+A  VF+ M  +G+ P + ++  L+  YS    + +
Sbjct: 299 LNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVE 358

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              + + M   G KPD F  N ++  Y +  + ++ +++   M       D   YN LI+
Sbjct: 359 ARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIH 418

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              + G + + + LF+++ +    PD+ T++  L  + ++    +   +F  M      P
Sbjct: 419 GLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKP 478

Query: 213 DGGTAKVLISA 223
           D     +LI A
Sbjct: 479 DIAMYNILIDA 489



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 71/160 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ M   G  P + ++ +LL  + K G + K   +   M  + LKPD  + N ++
Sbjct: 428 EAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILI 487

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  +   ++ + +       ++  Y  +IN   + G +++    F+++      
Sbjct: 488 DAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCP 547

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           PD  ++   +  + + K   R  ++  EM D G   + GT
Sbjct: 548 PDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587


>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 511

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 110/266 (41%), Gaps = 74/266 (27%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV-INQMHKSGLKPDTFVIN 113
           F+ A  +  +M   GI P   ++   + AY K    A+ E + ++ ++  G KPD + +N
Sbjct: 242 FNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMN 301

Query: 114 SMLNLYGRLGQ-----------------------------------FEKMEEVLTAMEKG 138
           S L  +GR GQ                                   +EKM  V+  M+K 
Sbjct: 302 STLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKY 361

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY----SRKKL 194
            Y+  I TYNI+I+ +GR G +++ME LF+ + ++R+KP  VT  S + AY     R+K+
Sbjct: 362 HYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKI 421

Query: 195 -----------------YRRC-------LEIFEEMIDA-------GCYPDGGTAKVLISA 223
                            +  C       LE F EM          GC PD  T + +  A
Sbjct: 422 DSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARA 481

Query: 224 CSS---EDQIEQVTTLVRTMHKDMKT 246
            S     +  +++  L+ T     +T
Sbjct: 482 YSDGGMANHAKEIQELITTAEPSKRT 507



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPD----TFVI 112
           A+ +F+EM   G   + +S+  LL+AYS++G + +   ++N+M  S   +PD    + +I
Sbjct: 174 AYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPDCQPDVHTYSILI 233

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLP 171
            S L ++     F K + +L+ M       +  TYN  I+ YG+     +ME  L   L 
Sbjct: 234 KSCLQVFA----FNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESILVDMLN 289

Query: 172 AKRLKPDVVTWTSRLAAYSRK---KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
               KPDV T  S L A+ R    +   +C E F+E   AG  P   T  +L+ +    +
Sbjct: 290 DDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQE---AGIQPSIQTFNILLDSYGKAE 346

Query: 229 QIEQVTTLVRTMHK 242
             E+++ ++  M K
Sbjct: 347 SYEKMSAVMEYMQK 360



 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           Y  LI + G+    EK   LFQ +  +  +    ++T+ L+AYSR  L      I  EM 
Sbjct: 158 YIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMK 217

Query: 207 DA-GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++  C PD  T  +LI +C       +  TL+  M
Sbjct: 218 NSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDM 252


>gi|224086334|ref|XP_002307852.1| predicted protein [Populus trichocarpa]
 gi|222853828|gb|EEE91375.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 9/212 (4%)

Query: 26  LPYPSHFMLINFLLLQ-HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSH 77
           LP      L N +L +   PN   F  +  +Y     F+ A  +F   ++ G+   + S+
Sbjct: 444 LPVGELSRLFNEMLQRGFDPNTITFNVMLDVYAKAKLFNKARELFMMARKRGLVDVI-SY 502

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
             ++ AY +  +       I+ M   G        N +L+ YG+ GQ E    VL  M+ 
Sbjct: 503 NTIIAAYGRKRDFKNMASTIHTMQFDGFSVSLEAYNCVLDAYGKEGQMESFRSVLQRMKN 562

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
            S  AD  TYNI++NIYG  G+I+++ G+   L    L PD+ ++ + + AY    +   
Sbjct: 563 SSCTADHYTYNIMMNIYGELGWIDEVAGVLTELRECGLGPDLCSYNTLIKAYGIAGMVED 622

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
            + + +EM   G  PD  T   LI+     D+
Sbjct: 623 AVGLVKEMRQNGVEPDKITYTNLITTLQKNDK 654



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  +    M+  G + +++++  +L AY K G +     V+ +M  S    D +  N 
Sbjct: 515 FKNMASTIHTMQFDGFSVSLEAYNCVLDAYGKEGQMESFRSVLQRMKNSSCTADHYTYNI 574

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+N+YG LG  +++  VLT + +     D+ +YN LI  YG  G +E   GL + +    
Sbjct: 575 MMNIYGELGWIDEVAGVLTELRECGLGPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRQNG 634

Query: 175 LKPDVVTWTSRLAAYSRKKLY 195
           ++PD +T+T+ +    +   Y
Sbjct: 635 VEPDKITYTNLITTLQKNDKY 655



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  F  +  +Y       +A   F +M+  GI     ++  ++T Y++     K E V
Sbjct: 9   PNVATFGMVMGLYQKGWNVEEAEFSFAQMRSFGII-CQSAYSAMITIYTRLSLYDKAEEV 67

Query: 97  INQMHKSGLKPDTFVIN-----SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           I  M     + D  V+N      +LN Y + G+ EK E++L AM++  ++  I  YNILI
Sbjct: 68  IGLM-----RDDKVVLNLENWLVLLNAYSQQGKLEKAEQLLVAMQEAKFSPTIVAYNILI 122

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
             YG+   +   + LF  +    L+PD  T+ S +  + R   Y+     ++E+   G  
Sbjct: 123 TGYGKASNMVAAQRLFSGIQNAGLEPDDTTYRSMIEGWGRVGNYKEAEWYYKELKRLGFK 182

Query: 212 PDGGTAKVLIS 222
           P+      LI+
Sbjct: 183 PNSPNLYTLIN 193



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 1/159 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M  LG+ P + +  +++  Y K  NV + E    QM   G+   +   ++M+ +Y RL  
Sbjct: 2   MLELGVQPNVATFGMVMGLYQKGWNVEEAEFSFAQMRSFGIICQS-AYSAMITIYTRLSL 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           ++K EEV+  M       ++  + +L+N Y + G +EK E L  ++   +  P +V +  
Sbjct: 61  YDKAEEVIGLMRDDKVVLNLENWLVLLNAYSQQGKLEKAEQLLVAMQEAKFSPTIVAYNI 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +  Y +         +F  + +AG  PD  T + +I  
Sbjct: 121 LITGYGKASNMVAAQRLFSGIQNAGLEPDDTTYRSMIEG 159



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 13/232 (5%)

Query: 44  PNLFV--FIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL +   +  IY     F++   ++ ++K  GI   + +  +++  Y K G++     V
Sbjct: 322 PNLHISCTMIDIYTTMGQFNEGEKLYMKLKSSGIGLDVIAFSIVIRMYVKAGSLKDACSV 381

Query: 97  INQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +  M K   + PD ++   ML +Y + G  +K+ ++   + K     D   YN LIN   
Sbjct: 382 LETMEKEKDMVPDIYLFRDMLRVYQQCGMMDKLNDLYFKILKSGVVWDQELYNCLINCCA 441

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R   + ++  LF  +  +   P+ +T+   L  Y++ KL+ +  E+F      G   D  
Sbjct: 442 RALPVGELSRLFNEMLQRGFDPNTITFNVMLDVYAKAKLFNKARELFMMARKRGLV-DVI 500

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKD-MKTALPIY---FNLYGEKGVARS 263
           +   +I+A   +   + + + + TM  D    +L  Y    + YG++G   S
Sbjct: 501 SYNTIIAAYGRKRDFKNMASTIHTMQFDGFSVSLEAYNCVLDAYGKEGQMES 552



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 1/183 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM + G  P   +  ++L  Y+K     K   +     K GL  D    N+++  YG
Sbjct: 452 LFNEMLQRGFDPNTITFNVMLDVYAKAKLFNKARELFMMARKRGL-VDVISYNTIIAAYG 510

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R   F+ M   +  M+   ++  +  YN +++ YG+ G +E    + Q +       D  
Sbjct: 511 RKRDFKNMASTIHTMQFDGFSVSLEAYNCVLDAYGKEGQMESFRSVLQRMKNSSCTADHY 570

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  Y           +  E+ + G  PD  +   LI A      +E    LV+ M
Sbjct: 571 TYNIMMNIYGELGWIDEVAGVLTELRECGLGPDLCSYNTLIKAYGIAGMVEDAVGLVKEM 630

Query: 241 HKD 243
            ++
Sbjct: 631 RQN 633


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 91/185 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+EM    I P + ++  L+    K G ++    ++++MH  G+  D    NS+
Sbjct: 369 DEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSI 428

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +  Q +K   +LT M+      DI TY  L++   + G +E    +F+ L  K  
Sbjct: 429 LDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGY 488

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             DV  +T+ +  +    L+   L++  +M + GC P+  T +++I +   +D+ ++   
Sbjct: 489 ILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEK 548

Query: 236 LVRTM 240
           L+R M
Sbjct: 549 LLREM 553



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 89/184 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F +M    I P + +  +L+  + K   + + + V+  M K G+KPD F  NS++
Sbjct: 265 DATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLM 324

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y  + +  K + +   + +     +I +Y+I+I+ + +   +++   LF+ +    + 
Sbjct: 325 DRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNII 384

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+ S +    +       L++ +EM D G   D  T   ++ A     Q+++   L
Sbjct: 385 PDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIAL 444

Query: 237 VRTM 240
           +  M
Sbjct: 445 LTKM 448



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 87/186 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  ++ EM   GI+P + ++  L++ +   G +     + N+M    + P+ +  N +
Sbjct: 229 NEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNIL 288

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + +  + ++ + VL  M K     D+ TYN L++ Y     + K + +F ++  + +
Sbjct: 289 VDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGV 348

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P++ +++  +  + + K     + +F+EM      PD  T   LI       +I     
Sbjct: 349 NPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALK 408

Query: 236 LVRTMH 241
           LV  MH
Sbjct: 409 LVDEMH 414



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 76/178 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V   M + GI P + ++  L+  Y     V K + + N + + G+ P+    + 
Sbjct: 298 LKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSI 357

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ + ++ + ++   +   M   +   D+ TYN LI+   + G I     L   +  + 
Sbjct: 358 MIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 417

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +  D +T+ S L A  +     + + +  +M D G  PD  T   L+       ++E 
Sbjct: 418 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLED 475



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/185 (17%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 60  AVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  + ++R+    + P +  +  ++ +  K   V +   + ++M   G+ PD    N+++
Sbjct: 195 AALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALI 254

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +  +G+ +   ++   M   +   ++ T+NIL++ + +   +++ + +   +  + +K
Sbjct: 255 SGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIK 314

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV T+ S +  Y   K   +   IF  +   G  P+  +  ++I       ++++   L
Sbjct: 315 PDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNL 374

Query: 237 VRTMH 241
            + MH
Sbjct: 375 FKEMH 379



 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/183 (15%), Positives = 81/183 (44%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V  ++ ++G  P + +   L+      G + +     +++   G   +     +++N  
Sbjct: 128 SVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGL 187

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++GQ     ++L  ++      ++  YN +I+   +   + +   L+  + +K + PDV
Sbjct: 188 CKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDV 247

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+ + ++ +      +   ++F +MI     P+  T  +L+     E ++++   ++  
Sbjct: 248 VTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAM 307

Query: 240 MHK 242
           M K
Sbjct: 308 MMK 310



 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 25/151 (16%), Positives = 68/151 (45%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +++  LG      S+  L+    K G  +    ++ ++    ++P+  + N++++   ++
Sbjct: 166 DKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKV 225

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
               +  ++ + M     + D+ TYN LI+ +   G ++    LF  +  + + P+V T+
Sbjct: 226 KLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTF 285

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
              +  + +++  +    +   M+  G  PD
Sbjct: 286 NILVDGFCKERRLKEAKNVLAMMMKQGIKPD 316


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 2/175 (1%)

Query: 42  HTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +T N+ V  +  ++ F    AV  EM++  + P + +H +++ A  + G+      +++ 
Sbjct: 96  YTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDS 155

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   GLKP     NS+L    R G ++K  EV   M+    A D+ ++ ILI  + R G 
Sbjct: 156 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 215

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           IE+   +++ +  + +KPD+V+++  +  ++R+      +    EM   G  PDG
Sbjct: 216 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG 270



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 1/150 (0%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +T+ +N M++ Y +  +F+K++ V++ MEK     D+ T+N++++   R G  E    L 
Sbjct: 94  NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 153

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
            S+ +K LKP +VT+ S L    R  ++ +  E+F+EM D G  PD  +  +LI      
Sbjct: 154 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 213

Query: 228 DQIEQVTTLVRTM-HKDMKTALPIYFNLYG 256
            +IE+   + + M H+ +K  L  +  L G
Sbjct: 214 GEIEEALKIYKEMRHRGIKPDLVSFSCLIG 243



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 6/196 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA    +EM   GI P + ++  ++  Y ++GNV+K +  + +M  + + PD    N+++
Sbjct: 428 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLI 487

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +  +     ++L  MEK     D+ TYN+LIN +   G +++   +F+ + AK ++
Sbjct: 488 HGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIE 547

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+ S +  +      +   ++ +EM+  G         V          I+     
Sbjct: 548 PDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAAGTVQFV------NIQNSAES 601

Query: 237 VRTMHKDMKTALPIYF 252
           ++ M  D+K    IYF
Sbjct: 602 LKQMPMDLKVTCSIYF 617



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  V +EM   G  P + ++  LL    K   +   EG++N+M + G+ PD     ++
Sbjct: 287 SDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTL 346

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y   G+ +K  ++   M       DI TYN LI+   R G ++K   L+  + ++ +
Sbjct: 347 IHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI 406

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSS 226
            P+ VT++  + ++  K          +EMI+ G  P+  T   +I   C S
Sbjct: 407 FPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRS 458



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 86/198 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  EM+  G+ P + +   L+  Y   G + K   + + M    L+PD    N+++
Sbjct: 323 DAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLI 382

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G  +K  ++   M       +  TY+ILI+ +   G +E   G    +  K + 
Sbjct: 383 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 442

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+++T+ S +  Y R     +  +  ++M+     PD  T   LI     ED++     L
Sbjct: 443 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 502

Query: 237 VRTMHKDMKTALPIYFNL 254
           +  M K+      + +N+
Sbjct: 503 LNMMEKEKVQPDVVTYNM 520



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 35/222 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  VF+EM   G+ P ++S  +L+  + + G + +   +  +M   G+KPD    + 
Sbjct: 181 WDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSC 240

Query: 115 MLNLYGRLGQFEKM--------------EEVLTAMEKGSYA------------------- 141
           ++ L+ R G+ +                + V+  M  G +                    
Sbjct: 241 LIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG 300

Query: 142 --ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+ TYN L+N   +   +   EGL   +  + + PD+ T+T+ +  Y  +    + L
Sbjct: 301 CLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKAL 360

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           ++F+ M++    PD  T   LI     +  +++   L   MH
Sbjct: 361 QLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH 402



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 87/183 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   EM+  G+ P    + +++  + + G ++    V ++M   G  PD    N++LN
Sbjct: 254 AMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLN 313

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +    E +L  M +     D+ T+  LI+ Y   G ++K   LF ++  +RL+P
Sbjct: 314 GLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRP 373

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + +    R+    +  +++++M     +P+  T  +LI +   + Q+E     +
Sbjct: 374 DIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFL 433

Query: 238 RTM 240
             M
Sbjct: 434 DEM 436



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ ++++M    I P   ++ +L+ ++ + G V    G +++M   G+ P+    NS++ 
Sbjct: 394 ANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 453

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K ++ L  M     + D+ TYN LI+ Y +   +     L   +  ++++P
Sbjct: 454 GYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQP 513

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           DVVT+   +  +S     +    IFE+M   G  PD  T   +I+ 
Sbjct: 514 DVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMING 559



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 71/163 (43%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  Y K     K + VI++M K  + PD    N M++   R G  E    ++ +M   
Sbjct: 100 IMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSK 159

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                I TYN ++    R G  +K   +F+ +    + PDV ++T  +  + R       
Sbjct: 160 GLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEA 219

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           L+I++EM   G  PD  +   LI   +   +++     +R M 
Sbjct: 220 LKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMR 262


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 3/202 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A +VF EMK  GI+P + ++ +++ A  ++G + +   V  +M  +G  P++   N++
Sbjct: 269 SEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNL 328

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + ++ R G+ EK+ +V   M++   AAD+ TYN LI  + +   + +   +  S+     
Sbjct: 329 IRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSMAKNDC 388

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+  ++       ++ +       +F  M + GC P+  T  +L+   +     + +  
Sbjct: 389 TPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPKSADMIFK 448

Query: 236 LVRTMHKDMKTALPIYFNLYGE 257
           L + M  D +   P  FN Y E
Sbjct: 449 LKKEM--DEEEVEP-NFNTYRE 467



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 1/215 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  + + MK   +  T+ +  +L+  Y + G  A+     N+M   G   D    ++
Sbjct: 164 FGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSN 223

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++  +  +  + +     + K  +  D+  Y  L++ + R G I + E +F+ +    
Sbjct: 224 VISILCKKRRAVEAQSFFDNL-KHKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAG 282

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+V T++  + A  R     R  ++F EM+DAGC P+  T   LI       + E+V 
Sbjct: 283 ISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVL 342

Query: 235 TLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYI 269
            +   M +    A  I +N   E      NLG+ I
Sbjct: 343 QVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAI 377



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 85/198 (42%), Gaps = 1/198 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A   F  M+  G    + +   +++   K     + +   + + K   +PD  V  S+
Sbjct: 200 AEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNL-KHKFEPDVIVYTSL 258

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + R G   + E V   M+    + ++ TY+I+I+   R G I +   +F  +     
Sbjct: 259 VHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGC 318

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ VT+ + +  + R     + L+++ +M    C  D  T   LI     +D + +   
Sbjct: 319 NPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIK 378

Query: 236 LVRTMHKDMKTALPIYFN 253
           ++ +M K+  T     FN
Sbjct: 379 VLNSMAKNDCTPNASSFN 396



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 1/181 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ +MKRL     + ++  L+  + K  N+ +   V+N M K+   P+    N +     
Sbjct: 344 VYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIA 403

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +         +   M++     +  TYNIL+ ++      + +  L + +  + ++P+  
Sbjct: 404 KSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFN 463

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSEDQIEQVTTLVRT 239
           T+   +A Y     +      F EMID  C  P     K+++       Q+++   LV  
Sbjct: 464 TYRELIALYCGMGHWNHAYMFFREMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDK 523

Query: 240 M 240
           M
Sbjct: 524 M 524



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 9/218 (4%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN++ +   I         + AH VF EM   G  P   +   L+  + + G   K   
Sbjct: 284 SPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQ 343

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V NQM +     D    N ++  + +     +  +VL +M K     + S++N +     
Sbjct: 344 VYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIA 403

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   +     +F  +     KP+ VT+   +  ++  K      ++ +EM +    P+  
Sbjct: 404 KSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFN 463

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM--HKDMKTALPIY 251
           T + LI+               R M   K +K ++P+Y
Sbjct: 464 TYRELIALYCGMGHWNHAYMFFREMIDEKCIKPSMPLY 501


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 95/197 (48%), Gaps = 1/197 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVINSML 116
           A  +F EM+  G +P + ++  L+  + +   V +   ++ ++  K+ L PD     S++
Sbjct: 256 AFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSII 315

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +LG+ EK   +   M       +  T+NILIN +G+ G +   E +++ +      
Sbjct: 316 SGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCP 375

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD++T+TS +  + R     R L+++ E+      P+  T  +L +A   E+++ +    
Sbjct: 376 PDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGF 435

Query: 237 VRTMHKDMKTALPIYFN 253
           +R +      A P  +N
Sbjct: 436 LRDLKWRHIVAQPFMYN 452



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 22/231 (9%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F F   I           A  ++EEM  LG  P + +   L+  + +TG V +   +
Sbjct: 341 PNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKL 400

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++++   L P+ +    + N   +  +  +    L  ++     A    YN +I+ + +
Sbjct: 401 WHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCK 460

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +++   +   +  KR KPD +T+T  +  +  K      + IF  M+  GC PD  T
Sbjct: 461 AGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSIT 520

Query: 217 AKVLISA---------------CSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
              LIS                 +SED    + +L R +     T +P+ F
Sbjct: 521 MTSLISCLLKAGMPNEAYRIMQIASEDFNLGLKSLKRNVPLRTNTDIPVAF 571



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 1/162 (0%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA- 134
           S  +L+    + G V K   + N+M   G  PD    N+++N + R+ + ++  ++L   
Sbjct: 239 SFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKEL 298

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           + K   + D+ TY  +I+ Y + G +EK   LF ++ +  +KP+  T+   +  + +   
Sbjct: 299 LSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGD 358

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
                 ++EEM+  GC PD  T   LI       ++E+   L
Sbjct: 359 MVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKL 400



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D+   N ++    R+G+ +K  E+   M     + D+ TYN LIN + R   +++   L 
Sbjct: 236 DSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLL 295

Query: 168 QSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + L +K  L PDVVT+TS ++ Y +     +   +F  MI +G  P+  T  +LI+ 
Sbjct: 296 KELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILING 352



 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 5/173 (2%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127
           L +  + +++  LL + S+ G     + V + M+  G  PD  V+  +++     G+F  
Sbjct: 131 LNLCHSFRTYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNI 190

Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
               +  +E       +  YN L+N   RG  +++    F+         D  ++   + 
Sbjct: 191 ARTWVDGVE-----FSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIR 245

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              R     +  E+F EM   GC PD  T   LI+     +++++   L++ +
Sbjct: 246 GLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKEL 298


>gi|356508382|ref|XP_003522936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
           chloroplastic-like [Glycine max]
          Length = 854

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L VF  +  F+    ++   K+ G+   + ++  ++ AY K  +       + +M   G 
Sbjct: 656 LDVFGKAKLFNKVWRLYCMAKKQGLVDVI-TYNTIIAAYGKNKDFNNMSSTVQKMEFDGF 714

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
                  NSML+ YG+ GQ E    VL  M+  + A+D  TYN LINIYG  G+I ++  
Sbjct: 715 SVSLEAYNSMLDAYGKDGQMETFRSVLQKMKDSNCASDHYTYNTLINIYGEQGWINEVAN 774

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +   L    L+PD+ ++ + + AY    +    + + +EM   G  PD  +   LI+A  
Sbjct: 775 VLTELKECGLRPDLCSYNTLIKAYGIAGMVAEAVGLIKEMRKNGIEPDKKSYTNLITALR 834

Query: 226 SEDQ 229
             D+
Sbjct: 835 RNDK 838



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 1/183 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM + G  P+  +  ++L  + K     K   +     K GL  D    N+++  YG
Sbjct: 636 LFDEMVQHGFAPSTITFNVMLDVFGKAKLFNKVWRLYCMAKKQGL-VDVITYNTIIAAYG 694

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +   F  M   +  ME   ++  +  YN +++ YG+ G +E    + Q +       D  
Sbjct: 695 KNKDFNNMSSTVQKMEFDGFSVSLEAYNSMLDAYGKDGQMETFRSVLQKMKDSNCASDHY 754

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + +  Y  +        +  E+ + G  PD  +   LI A      + +   L++ M
Sbjct: 755 TYNTLINIYGEQGWINEVANVLTELKECGLRPDLCSYNTLIKAYGIAGMVAEAVGLIKEM 814

Query: 241 HKD 243
            K+
Sbjct: 815 RKN 817



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 2/168 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F  M+   I     ++  ++T Y++     K EGVI  M K  + P+      
Sbjct: 210 LEEAEFAFSRMRGFRIV-CESAYSSMITIYTRLRLYEKAEGVIELMRKDEVVPNLENWLV 268

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP-AK 173
           MLN Y + G+    E VL AM++  ++ +I  +N +I  +G+   ++  + LF  +    
Sbjct: 269 MLNAYSQQGKLGDAERVLEAMQEAGFSDNIVAFNTMITGFGKARRMDAAQRLFMRITRCL 328

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            + PD  T+ S +  + R   Y      ++E+   G  P       LI
Sbjct: 329 EVDPDETTYRSMIEGWGRADNYEYATRYYKELKQMGFKPSSSNLFTLI 376



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H     + I+S+   F DA  ++ ++K  G+   M +  +++  Y K G +     V++ 
Sbjct: 509 HIACTMIDIYSVMGLFKDAEVLYLKLKSSGVALDMIAFSIVVRMYVKAGALKDACAVLDA 568

Query: 100 MH-KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +  +  + PD F++  ML +Y R     K+ ++   + K     D   YN ++N   +  
Sbjct: 569 IDMRPDIVPDKFLLCDMLRIYQRCNMATKLADLYYKISKSREDWDQELYNCVLNCCAQAL 628

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            ++++  LF  +      P  +T+   L  + + KL+ +   ++      G   D  T  
Sbjct: 629 PVDELSRLFDEMVQHGFAPSTITFNVMLDVFGKAKLFNKVWRLYCMAKKQGLV-DVITYN 687

Query: 219 VLISACSSEDQIEQVTTLVRTMHKD-MKTALPIY---FNLYGEKG 259
            +I+A         +++ V+ M  D    +L  Y    + YG+ G
Sbjct: 688 TIIAAYGKNKDFNNMSSTVQKMEFDGFSVSLEAYNSMLDAYGKDG 732



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 71/158 (44%), Gaps = 1/158 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  V E M++  + P +++ +++L AYS+ G +   E V+  M ++G   +    N+
Sbjct: 244 YEKAEGVIELMRKDEVVPNLENWLVMLNAYSQQGKLGDAERVLEAMQEAGFSDNIVAFNT 303

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           M+  +G+  + +  + +   + +      D +TY  +I  +GR    E     ++ L   
Sbjct: 304 MITGFGKARRMDAAQRLFMRITRCLEVDPDETTYRSMIEGWGRADNYEYATRYYKELKQM 363

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
             KP      + +   +        + I ++M+D GC+
Sbjct: 364 GFKPSSSNLFTLIKLEANYGDDEGAVGILDDMVDCGCH 401



 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++   V  E+K  G+ P + S+  L+ AY   G VA+  G+I +M K+G++PD     
Sbjct: 768 WINEVANVLTELKECGLRPDLCSYNTLIKAYGIAGMVAEAVGLIKEMRKNGIEPDKKSYT 827

Query: 114 SMLNLYGRLGQF 125
           +++    R  +F
Sbjct: 828 NLITALRRNDKF 839


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F+EM R G  P       L+    + G V        QM K G +P+  V N +L+
Sbjct: 134 ASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLH 193

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                GQ E+   +   M+  S + D+ TYN L++   +   +E+   LF+++ A    P
Sbjct: 194 GLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVP 253

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+T+++ +    R     + LE+F  M++AGC P+  T   LIS     +++ Q   L 
Sbjct: 254 NVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELF 313

Query: 238 RTM 240
             M
Sbjct: 314 EKM 316



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA   F++M + G  P +  + +LL     +G + +   +  +M      PD    N++L
Sbjct: 168 DASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLL 227

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  + E+  ++  AM    Y  ++ T++ LI+   R G +EK   +F S+     K
Sbjct: 228 DAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCK 287

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+T+ ++   R +   +  E+FE+M  A   PD      LI+       +++   L
Sbjct: 288 PNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKL 347

Query: 237 VRTM 240
            R M
Sbjct: 348 YREM 351



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 81/180 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EM   G TP+M+++  L+ A +K   V     + ++M + G  PD  +   ++    
Sbjct: 102 ILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLC 161

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ +   E    M K     ++  YN+L++     G +E+   LF  + +    PDVV
Sbjct: 162 QAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVV 221

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + L A  + +      ++FE M  AG  P+  T   LI       ++E+   +  +M
Sbjct: 222 TYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSM 281



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 81/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +++ V EEM   G  P + +   ++  ++++ N+ K   V   M +SG KPD    + ++
Sbjct: 28  ESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILI 87

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   ++G+ ++  ++L+ M        +  Y+ L+    +   ++    LF  +      
Sbjct: 88  HGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHH 147

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD + +   +    +    +   E F++M   GC P+     VL+    S  Q+EQ  TL
Sbjct: 148 PDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTL 207

Query: 237 VRTM 240
              M
Sbjct: 208 FAEM 211



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 1/181 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSML 116
           A  +FE+M +  I P   ++  L+  Y K G++ + E +  +M   +GL+P     N+++
Sbjct: 309 ARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLI 368

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + +LG+  +  E++  M     AAD  TY ILI    R   +++   +++ +  K+  
Sbjct: 369 DGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFL 428

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V+  S +    +     +   +FE    +G  P+  T ++L  +     ++E    L
Sbjct: 429 LDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKL 488

Query: 237 V 237
           +
Sbjct: 489 M 489



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 42  HTPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + PN+  F   I+          A  VF  M   G  P   ++  L++   +   V +  
Sbjct: 251 YVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQAR 310

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINI 153
            +  +M ++ + PD    NS++  Y + G  ++ E++   M  G+     I T+N LI+ 
Sbjct: 311 ELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDG 370

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + + G + +   L   +  K L  D  T+   +A  SR       LE++++M +     D
Sbjct: 371 FCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLD 430

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGE 257
             +    +        I+Q   +     K      P  F +  E
Sbjct: 431 PVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSE 474



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 27  PYPSHFMLINFLLLQHTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHML 79
           P  S+ +L   +     P++F F         S     A  V++ M   G  P   S+ +
Sbjct: 26  PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 85

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+   +K G + +   ++++M   G  P     +S++    +  + +    +   M +G 
Sbjct: 86  LIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGG 145

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +  D   +  LI    + G ++     F+ +P    +P+V  +   L          +  
Sbjct: 146 HHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQAN 205

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            +F EM    C PD  T   L+ A     ++E+   L   M 
Sbjct: 206 TLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMR 247


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 1/172 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+EM    + P + +    +TA  K G + +   + + M   G KPD     ++L+ Y 
Sbjct: 316 VFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYA 375

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G    M+ +   M       D   +N LIN Y R G ++K   +F+ +  + + PD++
Sbjct: 376 TAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDII 435

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
           T+++ ++A+ R       +E F  MID G  PD      LI   C+  D ++
Sbjct: 436 TFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVK 487



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +F +M+  GI P + ++  L+    KT  + K E V+ QM  +G++P+    N +++
Sbjct: 243 AHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIH 302

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G +++   V   M       D+   N  +    + G I++   +F S+  K  KP
Sbjct: 303 GYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKP 362

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           DV+++ + L  Y+          +F  M+  G  PD      LI+A
Sbjct: 363 DVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINA 408



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF  + R G+ P + S+  L+  +SK G V K   +  +M + G+ P+    +S++N   
Sbjct: 211 VFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLC 270

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  + +K E VL  M       +  TYN LI+ Y   G  ++   +F+ + +  L PDV 
Sbjct: 271 KTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVG 330

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
              S + A  +    +   +IF+ M+  G  PD
Sbjct: 331 NCNSFMTALCKHGRIKEARDIFDSMVLKGPKPD 363



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 91/186 (48%), Gaps = 3/186 (1%)

Query: 58  AHAVFEEMKRLGI---TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           A  +F+ M R       PT+ ++ +L+  Y +         V  ++ ++GL PD F  N+
Sbjct: 170 AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 229

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ +K  ++   ME+     ++ TY+ LIN   +   ++K E + + +    
Sbjct: 230 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 289

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+ +T+   +  YS   +++  + +F+EM  +   PD G     ++A     +I++  
Sbjct: 290 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 349

Query: 235 TLVRTM 240
            +  +M
Sbjct: 350 DIFDSM 355



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 4/186 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M   G+ P   ++  L+  YS +G   +   V  +M  S L PD    NS + 
Sbjct: 278 AERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMT 337

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  ++  +M       D+ +Y  L++ Y   G I  M+ LF  +  + + P
Sbjct: 338 ALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVP 397

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
           D   + + + AY+R  +  + L +FE+M   G  PD  T   +ISA       +D +E+ 
Sbjct: 398 DRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF 457

Query: 234 TTLVRT 239
             ++ T
Sbjct: 458 NHMIDT 463



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ M   G  P + S+  LL  Y+  G +A  + + N M   G+ PD  V N+++
Sbjct: 347 EARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLI 406

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y RLG  +K   +   M K     DI T++ +I+ + R G ++     F  +    + 
Sbjct: 407 NAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVP 466

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           PD   ++  +     ++   +  E+  +M+  G  P
Sbjct: 467 PDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP 502



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 1/153 (0%)

Query: 58  AHAVFEEMKRLGITP-TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +  +M   GI P  +K    ++    K G VA+ + V++ +  +G +P+    NS++
Sbjct: 488 AKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLV 547

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y  +G  ++   +L +ME      DI TYN L++ Y + G I+    LF+ +  KR+ 
Sbjct: 548 DGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVT 607

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
              V++   L    + +      E+F EMI++G
Sbjct: 608 LTSVSYNIILHGLFQARRTIVAKEMFHEMIESG 640



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 85/195 (43%), Gaps = 1/195 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FE+M + G+ P + +   +++A+ + G +       N M  +G+ PDT V + ++    
Sbjct: 421 MFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQC 480

Query: 121 RLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
                 K +E+++ M  KG     I  +  +IN   + G + + + +   +     +P++
Sbjct: 481 NRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNL 540

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +T+ S +  Y      +  + + + M   G  PD  T   L+       +I+   TL R 
Sbjct: 541 ITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRD 600

Query: 240 MHKDMKTALPIYFNL 254
           M     T   + +N+
Sbjct: 601 MLHKRVTLTSVSYNI 615



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 29/216 (13%)

Query: 58  AHAVFEEMKRLG-ITPTMKSHML------------------LLTAYSKTGNVAKCEGV-- 96
           AHA F E  R G + P    H+                   LL+A ++    A C  V  
Sbjct: 109 AHAAFRERLRSGTLGPDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPA 168

Query: 97  -----INQMHKSGL---KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
                  +M +       P  +  N ++N Y R  + +    V   + +     D+ +YN
Sbjct: 169 LAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYN 228

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            LI+ + + G ++K   LF  +  + + P+VVT++S +    + K   +   +  +M+ A
Sbjct: 229 ALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGA 288

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
           G  P+  T   LI   S+    ++   + + M   +
Sbjct: 289 GVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSL 324



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/102 (20%), Positives = 51/102 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  +   G+ PT+ ++ +++T   K  +    + + + M KS   PD+ ++N ++
Sbjct: 698 EAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEII 757

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +    G+  K    L+ ++K     + +T ++LI ++   G
Sbjct: 758 RMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNG 799


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 87/178 (48%)

Query: 49   FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
            FI S    DA  +FE M+  G+ P + S   ++  Y + G +++    ++ M K G  PD
Sbjct: 1268 FIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPD 1327

Query: 109  TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
             F   ++++ Y + G        L  M K     ++ TY+ LIN Y + G  +  EGLF 
Sbjct: 1328 EFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFA 1387

Query: 169  SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
            ++ A+ L P+VVT+T  + +  +K    R    FE M+   C P+  T   L++  +S
Sbjct: 1388 NMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTS 1445



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 77/184 (41%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + DA  +++EM          S  +L+        V +   +I     +G  P     N 
Sbjct: 959  WDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNV 1018

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +++ Y R G   +   +L  ME   +   + TY  LIN  G+ G +EK+  LF  +  + 
Sbjct: 1019 LIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRG 1078

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              P+V  + S + A    +   + + I ++M  +GC PD  T   LI+    E  + +  
Sbjct: 1079 FSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAE 1138

Query: 235  TLVR 238
              +R
Sbjct: 1139 HFLR 1142



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 90/204 (44%), Gaps = 8/204 (3%)

Query: 33   MLINFLLLQHTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
            +L+  +   HTP++  F       + +   S+A  V E+M    + P +  + +L++   
Sbjct: 1175 LLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLC 1234

Query: 86   KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
            K   +   + ++ +M +  ++PD FV  ++++ + R        ++   ME      DI 
Sbjct: 1235 KKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIV 1294

Query: 146  TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            + N +I  Y + G + +      ++      PD  T+T+ ++ Y+++      L    +M
Sbjct: 1295 SCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDM 1354

Query: 206  IDAGCYPDGGTAKVLISA-CSSED 228
            I   C P+  T   LI+  C + D
Sbjct: 1355 IKRKCKPNVVTYSSLINGYCKTGD 1378



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%)

Query: 64   EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
            EM+  G  PT+ ++  L+    K G++ K   +  +M K G  P+  + NS+++      
Sbjct: 1038 EMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCR 1097

Query: 124  QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
               +   +L  M       DI T+N LI      G + K E   +    + L P+ +++T
Sbjct: 1098 SATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYT 1157

Query: 184  SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
              +  +  +       ++  EM+  G  PD  T   LI
Sbjct: 1158 PLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALI 1195



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 4/210 (1%)

Query: 60   AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            ++F EM++ G +P ++ +  ++ A     +  +   ++ QM  SG  PD    N+++   
Sbjct: 1069 SLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGL 1128

Query: 120  GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               G   K E  L    +     +  +Y  LI+ +   G +     L   +  +   PDV
Sbjct: 1129 CHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDV 1188

Query: 180  VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            VT+ + +            L + E+M +   +PD     VLIS    +  +     ++  
Sbjct: 1189 VTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEE 1248

Query: 240  M-HKDMKTALPIYFNLYGEKGVARS-NLGQ 267
            M  K+++    +Y  L    G  RS NLG 
Sbjct: 1249 MLEKNVQPDEFVYATLI--DGFIRSENLGD 1276



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/158 (18%), Positives = 69/158 (43%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            + A  + ++M   G  P + +   L+T     G+V K E  + +  +  L P+      +
Sbjct: 1100 TQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPL 1159

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            ++ +   G+     ++L  M    +  D+ T+  LI+     G + +   + + +  +++
Sbjct: 1160 IHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 1219

Query: 176  KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             PDV  +   ++   +K++      I EEM++    PD
Sbjct: 1220 FPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPD 1257



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 77/191 (40%)

Query: 40   LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
            L +TP +  F        A  +  EM   G TP + +   L+      G V++   V  +
Sbjct: 1154 LSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREK 1213

Query: 100  MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
            M +  + PD  + N +++   +       + +L  M + +   D   Y  LI+ + R   
Sbjct: 1214 MTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSEN 1273

Query: 160  IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            +     +F+ +  K + PD+V+  + +  Y +  +    +     M   GC PD  T   
Sbjct: 1274 LGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTT 1333

Query: 220  LISACSSEDQI 230
            +IS  + +  +
Sbjct: 1334 VISGYAKQGNL 1344



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/160 (18%), Positives = 64/160 (40%)

Query: 54   YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            +   A     E  R  + P   S+  L+  +   G +     ++ +M   G  PD     
Sbjct: 1133 HVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFG 1192

Query: 114  SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++++     G+  +   V   M +     D++ YN+LI+   +   +   + + + +  K
Sbjct: 1193 ALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEK 1252

Query: 174  RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             ++PD   + + +  + R +      +IFE M   G  PD
Sbjct: 1253 NVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPD 1292


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 96/187 (51%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A ++F++M    + P   +  +L+    K   +++   V   M + GL+PD +  N++
Sbjct: 132 NEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNAL 191

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y    Q ++ +++   M++   A ++ +YNILIN + + G I++ +GL   +  K L
Sbjct: 192 VDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSL 251

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+ T+++ +  + +    +   E+ +EM   G  P+  T  +++        +++   
Sbjct: 252 TPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFE 311

Query: 236 LVRTMHK 242
           L++ M +
Sbjct: 312 LLKAMQE 318



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 35/203 (17%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F  M R G  P ++S+ +L+  + K+G + + +G++ +M    L PD F  +++
Sbjct: 202 DEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTL 261

Query: 116 LNLYGRLGQFEKMEEVLT-----------------------------------AMEKGSY 140
           +  + ++G+ ++ +E+L                                    AM++   
Sbjct: 262 MRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKI 321

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             +I  Y ILI      G +E    LF +L  K ++P VVT+T  ++   +  L     E
Sbjct: 322 EPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACE 381

Query: 201 IFEEMIDAGCYPDGGTAKVLISA 223
           +F EM   GC P+  T  V+I  
Sbjct: 382 LFREMAVNGCLPNSCTYNVIIQG 404



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 87/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM ++G  P + ++  ++    K GN      ++ +M + G KP+    N+++
Sbjct: 28  DAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTII 87

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +     +  +  + M K     D+ TY+ +++ +   G + +   LF+ +  + + 
Sbjct: 88  DSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVI 147

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT+T  +    +K++      +FE M + G  PD  T   L+    S  Q+++   L
Sbjct: 148 PNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKL 207

Query: 237 VRTMHK 242
              M +
Sbjct: 208 FNIMDR 213



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 93/198 (46%), Gaps = 1/198 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M+  G  P + ++  ++ +  K   V +     ++M K G+ PD F  +S+L+
Sbjct: 64  ALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILH 123

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  LG+  +   +   M + +   +  T+ ILI+   +   I +   +F+++  K L+P
Sbjct: 124 GFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEP 183

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV T+ + +  Y  +       ++F  M   GC P+  +  +LI+      +I++   L+
Sbjct: 184 DVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLL 243

Query: 238 RTM-HKDMKTALPIYFNL 254
             M HK +   +  Y  L
Sbjct: 244 AEMSHKSLTPDIFTYSTL 261



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 78/176 (44%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M +LG+ PT+ +   LL+       +     + ++M K G +PD    ++++N   ++G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                ++L  ME+     ++  YN +I+   +   + +    F  +  + + PDV T++S
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            L  +           +F++M++    P+  T  +LI     +  I +   +  TM
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETM 176



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 86/190 (45%), Gaps = 3/190 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + +EM   G+ P + ++ ++L    K G++ +   ++  M +S ++P+ F+   ++
Sbjct: 273 EAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILI 332

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 G+ E   E+ + +        + TY ++I+   +GG   +   LF+ +      
Sbjct: 333 EGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCL 392

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T+   +  + R       + + EEM+  G   D  T ++L    SS++ I Q    
Sbjct: 393 PNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSDLESSDEIISQ---F 449

Query: 237 VRTMHKDMKT 246
           +R   +D KT
Sbjct: 450 MRGSSQDRKT 459


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 31/232 (13%)

Query: 10  DLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEE----- 64
           + CV   +PH   F+ LPY      I+       PNL   I++  F   HA+  +     
Sbjct: 27  EFCVL--SPH---FDGLPYA-----ISVFETIQEPNLL--IWNTMFR-GHALSSDPVSAL 73

Query: 65  -----MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
                M  LG+ P   +   LL + +K+    + + +   + K G   D +V  S++++Y
Sbjct: 74  YLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMY 133

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G+ E   +V       S   D+ +Y  LI  Y   G+IE  + LF  +P K    DV
Sbjct: 134 VQNGRLEDARKVFDQ----SSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK----DV 185

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           V+W + ++ Y+    Y+  LE+F++M+     PD  T   ++SAC+    IE
Sbjct: 186 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 237



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 91/178 (51%), Gaps = 8/178 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  +F+E+        + S   +++ Y++TGN  +   +   M K+ ++PD   + 
Sbjct: 169 YIENAQKLFDEIP----VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 224

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   + G  E   +V   ++   + +++   N LI++Y + G +E   GLF+ L  K
Sbjct: 225 TVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYK 284

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               DV++W + +  Y+   LY+  L +F+EM+ +G  P+  T   ++ AC+    I+
Sbjct: 285 ----DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAID 338



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV---LTAMEKGSYAADISTYNILIN 152
           +  +M +SG  P+   + S+L     LG  +    +   +    KG   A  S    LI+
Sbjct: 308 LFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNAS-SLLTSLID 366

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +Y + G IE  + +F S+  + L     +W + +  ++         ++F +M   G  P
Sbjct: 367 MYAKCGDIEAAKQVFDSMLTRSLS----SWNAMIFGFAMHGKANAAFDLFSKMRKNGIDP 422

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
           D  T   L+SACS    ++    + R+M +D K
Sbjct: 423 DDITFVGLLSACSHSGMLDLGRHIFRSMSQDYK 455



 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M    +T ++ S   ++  ++  G       + ++M K+G+ PD      +L+
Sbjct: 377 AKQVFDSM----LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLS 432

Query: 118 LYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                G  +    +  +M +       +  Y  +I++ G  G  ++ + + +++P   ++
Sbjct: 433 ACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMP---ME 489

Query: 177 PDVVTWTSRLAA 188
           PD V W S L A
Sbjct: 490 PDGVIWCSLLKA 501


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 2/175 (1%)

Query: 42  HTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +T N+ V  +  ++ F    AV  EM++  + P + +H +++ A  + G+      +++ 
Sbjct: 157 YTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDS 216

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   GLKP     NS+L    R G ++K  EV   M+    A D+ ++ ILI  + R G 
Sbjct: 217 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 276

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           IE+   +++ +  + +KPD+V+++  +  ++R+      +    EM   G  PDG
Sbjct: 277 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG 331



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 1/150 (0%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +T+ +N M++ Y +  +F+K++ V++ MEK     D+ T+N++++   R G  E    L 
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 214

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
            S+ +K LKP +VT+ S L    R  ++ +  E+F+EM D G  PD  +  +LI      
Sbjct: 215 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 274

Query: 228 DQIEQVTTLVRTM-HKDMKTALPIYFNLYG 256
            +IE+   + + M H+ +K  L  +  L G
Sbjct: 275 GEIEEALKIYKEMRHRGIKPDLVSFSCLIG 304



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 82/158 (51%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA    +EM   GI P + ++  ++  Y ++GNV+K +  + +M  + + PD    N++
Sbjct: 488 EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 547

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y +  +     ++L  MEK     D+ TYN+LIN +   G +++   +F+ + AK +
Sbjct: 548 IHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 607

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +PD  T+ S +  +      +   ++ +EM+  G  PD
Sbjct: 608 EPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  V +EM   G  P + ++  LL    K   +   EG++N+M + G+ PD     ++
Sbjct: 348 SDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTL 407

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y   G+ +K  ++   M       DI TYN LI+   R G ++K   L+  + ++ +
Sbjct: 408 IHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI 467

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSS 226
            P+ VT++  + ++  K          +EMI+ G  P+  T   +I   C S
Sbjct: 468 FPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRS 519



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 86/198 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  EM+  G+ P + +   L+  Y   G + K   + + M    L+PD    N+++
Sbjct: 384 DAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLI 443

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G  +K  ++   M       +  TY+ILI+ +   G +E   G    +  K + 
Sbjct: 444 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 503

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+++T+ S +  Y R     +  +  ++M+     PD  T   LI     ED++     L
Sbjct: 504 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 563

Query: 237 VRTMHKDMKTALPIYFNL 254
           +  M K+      + +N+
Sbjct: 564 LNMMEKEKVQPDVVTYNM 581



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 35/222 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  VF+EM   G+ P ++S  +L+  + + G + +   +  +M   G+KPD    + 
Sbjct: 242 WDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSC 301

Query: 115 MLNLYGRLGQFEKM--------------EEVLTAMEKGSYA------------------- 141
           ++ L+ R G+ +                + V+  M  G +                    
Sbjct: 302 LIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG 361

Query: 142 --ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+ TYN L+N   +   +   EGL   +  + + PD+ T+T+ +  Y  +    + L
Sbjct: 362 CLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKAL 421

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           ++F+ M++    PD  T   LI     +  +++   L   MH
Sbjct: 422 QLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH 463



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 87/183 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A   EM+  G+ P    + +++  + + G ++    V ++M   G  PD    N++LN
Sbjct: 315 AMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLN 374

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +    E +L  M +     D+ T+  LI+ Y   G ++K   LF ++  +RL+P
Sbjct: 375 GLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRP 434

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + +    R+    +  +++++M     +P+  T  +LI +   + Q+E     +
Sbjct: 435 DIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFL 494

Query: 238 RTM 240
             M
Sbjct: 495 DEM 497



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ ++++M    I P   ++ +L+ ++ + G V    G +++M   G+ P+    NS++ 
Sbjct: 455 ANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 514

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K ++ L  M     + D+ TYN LI+ Y +   +     L   +  ++++P
Sbjct: 515 GYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQP 574

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           DVVT+   +  +S     +    IFE+M   G  PD  T   +I+ 
Sbjct: 575 DVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMING 620



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 71/163 (43%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  Y K     K + VI++M K  + PD    N M++   R G  E    ++ +M   
Sbjct: 161 IMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSK 220

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                I TYN ++    R G  +K   +F+ +    + PDV ++T  +  + R       
Sbjct: 221 GLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEA 280

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           L+I++EM   G  PD  +   LI   +   +++     +R M 
Sbjct: 281 LKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMR 323


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 99/200 (49%), Gaps = 11/200 (5%)

Query: 41  QHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           + TPNL + + +           E++R G+ P + ++  L++A S+  N+ +   V + M
Sbjct: 306 EMTPNLAIELLT-----------EVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDM 354

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
                +PD +  N+M+++YGR G   K E++   +E   +  D  +YN  +  + R G +
Sbjct: 355 VAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNV 414

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           EK++ + + +       D +T+ + +  Y ++      L+++ +M  +G  PD  T  VL
Sbjct: 415 EKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVL 474

Query: 221 ISACSSEDQIEQVTTLVRTM 240
           I +    ++IE+   ++  M
Sbjct: 475 IDSLGKTNKIEEAAGMMSEM 494



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 99/207 (47%), Gaps = 7/207 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y        A  +F +++  G  P   S+   L A+++ GNV K + +
Sbjct: 361 PDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDI 420

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M K G   D    N+M+++YG+ GQ +   ++   M+      D+ TY +LI+  G+
Sbjct: 421 CEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGK 480

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              IE+  G+   +    +KP + T+++ +  Y++        E F+ M+ +G  PD   
Sbjct: 481 TNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLA 540

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
             V++      ++ ++  T  + M  D
Sbjct: 541 YSVMLDIHLRFNEPKRAMTFYKEMIHD 567



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 23/255 (9%)

Query: 2   KKPQCTTCDLC-----VAQRAPH------SW-NFNYLPYPSHFMLINFLLLQHTPNLFVF 49
           +K Q T  D C     V Q + H       W N  +   P+  ML   L +    N    
Sbjct: 181 RKVQMTPTDFCFVVKSVGQESWHRAFEVYEWLNLRHWYSPNARMLSTILAVLGKANQEPL 240

Query: 50  IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
              + F+ A    E         T+K +  ++  Y+++G   K + + + M + G +PD 
Sbjct: 241 AVEV-FTRAEPSVEN--------TVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDL 291

Query: 110 FVINSMLNLYGRLGQFEK--MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
              N+++N   + G+       E+LT + +     DI TYN LI+   R   +E+   +F
Sbjct: 292 VSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVF 351

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             + A   +PD+ T+ + ++ Y R  L  +  ++F ++   G +PD  +    + A + E
Sbjct: 352 DDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFARE 411

Query: 228 DQIEQVTTLVRTMHK 242
             +E+V  +   M K
Sbjct: 412 GNVEKVKDICEEMVK 426



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VF++M      P + ++  +++ Y + G   K E + N +   G  PD    NS
Sbjct: 344 LEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNS 403

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L  + R G  EK++++   M K  +  D  TYN +I++YG+ G  +    L++ + +  
Sbjct: 404 FLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSG 463

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
             PDV+T+T  + +  +         +  EM++ G  P   T   LI
Sbjct: 464 RNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALI 510



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 89/196 (45%)

Query: 46   LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
            L   I      + + V +E++ +G   +  S +L+L A+++ GN+ + + + + M  +G 
Sbjct: 857  LQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGY 916

Query: 106  KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
             P   +   M  L  R  Q   +E +L+ ME+  +  D+S +N ++ +Y       K   
Sbjct: 917  FPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQ 976

Query: 166  LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            ++Q +    L+PD  T+   +  Y R    +  L + +EM   G  P   T K L+++  
Sbjct: 977  IYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFG 1036

Query: 226  SEDQIEQVTTLVRTMH 241
             +  +EQ   L   + 
Sbjct: 1037 KQQLVEQAEELFEELQ 1052



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A AVF  M + G +PT+ S   LL A    G + +   V+ ++   G K     I  
Sbjct: 831 YERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILL 890

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+ + R G   +++++   M+   Y   +  Y ++  +  RG  +  +E +   +    
Sbjct: 891 MLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAG 950

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            KPD+  W S L  Y     +R+  +I++ + + G  PD  T  +LI
Sbjct: 951 FKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILI 997



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 35/221 (15%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +   ++  MK  G  P+M  + ++     +   V   E ++++M ++G KPD  + NS+L
Sbjct: 903  EVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVL 962

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY---------------------- 154
             +Y  +  F K  ++   +++     D  TYNILI +Y                      
Sbjct: 963  KMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLE 1022

Query: 155  -------------GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
                         G+   +E+ E LF+ L +   K D   +   +  Y     + +   +
Sbjct: 1023 PKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRL 1082

Query: 202  FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            F  M D G  P   T  +L+ +  S  Q ++   ++  + +
Sbjct: 1083 FSMMKDEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKE 1123



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 80/189 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A +V   M++  IT   K    L+ AY+ +G   +   V N M K G  P    IN 
Sbjct: 796 WQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSING 855

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L      G+ E++  V+  ++   +    S+  ++++ + R G I +++ ++  + A  
Sbjct: 856 LLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAG 915

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P +  +        R K  R    +  EM +AG  PD      ++    + D   + T
Sbjct: 916 YFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTT 975

Query: 235 TLVRTMHKD 243
            + + + +D
Sbjct: 976 QIYQRIKED 984



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 75/154 (48%), Gaps = 4/154 (2%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +FEE++  G       + +++  Y  +G+ +K + + + M   G++P    ++ ++ 
Sbjct: 1044 AEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLMV 1103

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADIST--YNILINIYGRGGFIEKMEGLFQSLPAKRL 175
             YG  GQ ++ E+VL+ +++    A++ST  Y+ +I+ Y R G         + +  + L
Sbjct: 1104 SYGSSGQPQEAEKVLSNLKETD--ANLSTLPYSSVIDAYVRNGDYNAGIQKLKQVKEEGL 1161

Query: 176  KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +PD   WT  + A S  +     + +   + D G
Sbjct: 1162 EPDHRIWTCFIRAASLSQHTSEAILLLNALRDTG 1195



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 36/231 (15%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            F     +++ +K  G+ P   ++ +L+  Y +     +   ++++M   GL+P      S
Sbjct: 971  FRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKS 1030

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++  +G+    E+ EE+   ++      D S Y+I++ IY   G   K + LF  +  + 
Sbjct: 1031 LVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEG 1090

Query: 175  LKPDVVT-----------------------------------WTSRLAAYSRKKLYRRCL 199
            ++P + T                                   ++S + AY R   Y   +
Sbjct: 1091 VEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDYNAGI 1150

Query: 200  EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
            +  +++ + G  PD       I A S      +   L+  + +D    LPI
Sbjct: 1151 QKLKQVKEEGLEPDHRIWTCFIRAASLSQHTSEAILLLNAL-RDTGFDLPI 1200



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 14/236 (5%)

Query: 38  LLLQHTPN--------LFVFIFSIYFSD-AHAVFEEMKRLGITPTMKSHMLLLTAYSKTG 88
           LL +HTP         L V +      D A   +   + LG T +      L+    +  
Sbjct: 664 LLKEHTPRSSQMITEALVVMLCKAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCLENE 723

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME-KGSYAADISTY 147
              +   V + M   G+K    +  SM+ LY ++G  E    ++   E  G+   +IS Y
Sbjct: 724 LFTEASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISVY 783

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
             +I  YGR    +K E +  ++    +  +   W + + AY+    Y R   +F  M+ 
Sbjct: 784 VDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVFNTMMK 843

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
            G  P   +   L+ A   + ++E++  +V+ +     K  K+++ +  + +   G
Sbjct: 844 DGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAG 899



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 50/109 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  EM   G+ PT++++  L+  Y+K G   + E   + M +SG +PD    + 
Sbjct: 484 IEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSV 543

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           ML+++ R  + ++       M       + S Y +++   G    +E +
Sbjct: 544 MLDIHLRFNEPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDI 592


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 10/208 (4%)

Query: 35  INFLLLQHTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           I F+   H  N  +  +      SDA  VFEE     I         ++TA S+  +   
Sbjct: 433 IGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTS----MITALSQCDHGEG 488

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              +  +M + GL+PD FV++S+LN    L  +E+ ++V   + K  + +D    N L+ 
Sbjct: 489 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVY 548

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            Y + G IE  E  F SLP +     VV+W++ +   ++    +R LE+F  M+D G  P
Sbjct: 549 TYAKCGSIEDAELAFSSLPER----GVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 604

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +  T   ++ AC+    +++      +M
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKRYFNSM 632



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  VF+E    G      S   L++AY K         V  +M  SG++P  F  +
Sbjct: 150 FMDDARRVFDEA---GSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFS 206

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N        +   +V   + +  Y  D+ T N L+++Y + G ++    +F+ +P  
Sbjct: 207 CVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-- 264

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
               DVV+W + ++         R +E+  +M  +G  P+      ++ AC+
Sbjct: 265 --DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 314



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 21/198 (10%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+E+      P   S   L+TAYS  G         + M   G+  + F +  +L 
Sbjct: 56  ARRVFDEIP----DPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK 111

Query: 118 LY--GRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
                +LG Q   M     AM  G + +D+   N L+ +YG  GF++    +F    ++R
Sbjct: 112 CVPDAQLGAQVHAM-----AMATG-FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSER 165

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE--- 231
              + V+W   ++AY +       +++F EM+ +G  P       +++AC+    I+   
Sbjct: 166 ---NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGR 222

Query: 232 QVTTLVRTM--HKDMKTA 247
           QV  +V  M   KD+ TA
Sbjct: 223 QVHAMVVRMGYEKDVFTA 240



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE+M    +     S   L++     G+  +   ++ QM  SGL P+ F+++S+L 
Sbjct: 256 ASVIFEKMPDSDVV----SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILK 311

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G F+   ++   M K +  +D      L+++Y +  F++    +F  +  +    
Sbjct: 312 ACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR---- 367

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIF 202
           D++ W + ++  S    +     IF
Sbjct: 368 DLILWNALISGCSHGGRHDEAFSIF 392


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 98/196 (50%), Gaps = 2/196 (1%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H    +M + G TP ++ +  ++    K G+      ++++M   GLKP+    N++L  
Sbjct: 251 HEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKG 310

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
                ++EK EE+LT M + +   D  T+NIL++ + + G ++++  L + +      PD
Sbjct: 311 ICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPD 370

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLV 237
           V+T+T+ +  + ++ L    + + + M   GC P+  +  +++   CS+E  ++    + 
Sbjct: 371 VITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMS 430

Query: 238 RTMHKDMKTALPIYFN 253
           R + +      P+ FN
Sbjct: 431 RMIQQGCLPN-PVTFN 445



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 80/173 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +   M + G  P   +   ++    K G V +   ++ QM  +G  PD    ++
Sbjct: 422 WVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYST 481

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G+ G+ E+  E+L  M       ++ TY+ +     R G I+K+  +F ++    
Sbjct: 482 VIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDAT 541

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           ++ D V + + +++  +++     ++    M+  GC P+  T   LI   +SE
Sbjct: 542 IRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASE 594



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/193 (18%), Positives = 85/193 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E+M   G  P + ++  ++  + K G + +   ++  M   G KP+T     +L    
Sbjct: 358 LLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLC 417

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              ++   EE+++ M +     +  T+N +IN   + G +E+   L + +      PD++
Sbjct: 418 STERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLI 477

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++++ +    +       LE+   MI+ G  P+  T   +  A + E +I++V  +   +
Sbjct: 478 SYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNI 537

Query: 241 HKDMKTALPIYFN 253
                 +  + +N
Sbjct: 538 QDATIRSDAVLYN 550



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/218 (18%), Positives = 88/218 (40%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +   M   G+ P +  +  +L          K E ++ +M++     D    N +++
Sbjct: 285 ANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVD 344

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G  +++ E+L  M +     D+ TY  +IN + + G I++   L +++P+   KP
Sbjct: 345 FFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKP 404

Query: 178 DVVTWT-------------------SRLAA----------------YSRKKLYRRCLEIF 202
           + +++T                   SR+                    +K L  + +E+ 
Sbjct: 405 NTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELL 464

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++M+  GC PD  +   +I       + E+   L+  M
Sbjct: 465 KQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVM 502



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 85/231 (36%), Gaps = 45/231 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT----F 110
            +DA AV +EM      P    + +++ +  ++G  +    V+  +H  G   DT     
Sbjct: 132 IADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNL 191

Query: 111 VINSM---------------LNLYG-------------------RLGQFE-------KME 129
           VIN++               L L+G                   R G  E       K+ 
Sbjct: 192 VINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVH 251

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           E L+ M +     DI  Y  +I+   + G  E    +   +P+  LKP+VV + + L   
Sbjct: 252 EALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGI 311

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                + +  E+  EM    C  D  T  +L+        +++V  L+  M
Sbjct: 312 CSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 362



 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 14/166 (8%)

Query: 62  FEEMKRLG----ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            E  +RL     + P   ++  ++      G +A    V+++M      P   + + ++ 
Sbjct: 100 VEAARRLAAAVPVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIE 159

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G +     VL A+       D    N++IN     G +++   + + LP    + 
Sbjct: 160 SACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEA 219

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA----------GCYPD 213
           D+V++ + L      K +    E+ +EM+            GC PD
Sbjct: 220 DIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPD 265


>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
          Length = 853

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 103/211 (48%), Gaps = 3/211 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM R    PT+ ++  ++ AY +   + +   V  +M ++G +PD     ++++++ 
Sbjct: 382 LLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHA 441

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  +   ++   M++   + D  TY++++N  G+GG +     LF  +      P++V
Sbjct: 442 KAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLV 501

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +A  ++ + Y   ++++++M  AG  PD  T  +++        +++   +   M
Sbjct: 502 TYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEM 561

Query: 241 HKDMKTALPIY---FNLYGEKGVARSNLGQY 268
            +D     P+Y    +L+G+ G     LG Y
Sbjct: 562 RRDWAPDEPVYGLLVDLWGKAGNVDKALGWY 592



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 85/168 (50%), Gaps = 1/168 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F EM   G TP + ++ +++   +K  N      +   M  +G +PD    + ++ 
Sbjct: 484 AYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVME 543

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           + G  G  ++ E V   M +  +A D   Y +L++++G+ G ++K  G +Q++    L+P
Sbjct: 544 VLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQP 602

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +V T  S L+A+ +   ++    + + M+  G  P   T  +L+S C+
Sbjct: 603 NVPTCNSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLLSCCT 650



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  VFEEM+  G  P   ++  L+  ++K G +     +  +M + GL PDTF  +
Sbjct: 410 YLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYS 469

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M+N  G+ GQ     ++   M +     ++ TYNI+I +  +    E +  L++ +   
Sbjct: 470 VMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVA 529

Query: 174 RLKPDVVTWT 183
             +PD +T++
Sbjct: 530 GFRPDKITYS 539



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 73/153 (47%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+ + G+  QF  ++E+L  M +      + TYN +I+ YGR  +++
Sbjct: 353 QPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLK 412

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F+ +     +PD VT+ + +  +++       ++++  M + G  PD  T  V++
Sbjct: 413 EAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMV 472

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           +      Q+     L   M ++  T   + +N+
Sbjct: 473 NCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNI 505



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A AVF EM+R    P    + LL+  + K GNV K  G    M + GL+P+    N
Sbjct: 550 HLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCN 608

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           S+L+ + ++ +F+    VL  M        + TY +L++
Sbjct: 609 SLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLLS 647


>gi|357487221|ref|XP_003613898.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515233|gb|AES96856.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 807

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 3/206 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   V  E+  + +     ++  L+  Y K G +     +  +M K G+ P T   N+M+
Sbjct: 254 DVRHVCNEVSHVNVCLNSHTYNTLIDIYGKAGQIQAVYEIFAKMIKQGVAPTTVTFNTMI 313

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +LYG  G+  ++  +L  ME+     D  TYNILI++  +   I+        +    L+
Sbjct: 314 HLYGNHGRIREVSLLLQRMEELRCPPDTRTYNILISVLVKHNNIKLAAKYLMKMKEAFLE 373

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+V++ + L AYS +K+ +   E+  EM + G   D  T   L       + +EQ    
Sbjct: 374 PDLVSYRTLLYAYSTRKMVQEAEELVREMDERGLKIDEFTQAALTRMYVESNMLEQSWLW 433

Query: 237 VRTMHKDMKTALPIY---FNLYGEKG 259
            R  H         Y    + YGE+G
Sbjct: 434 FRRFHVAGNITSSCYCANIDAYGEQG 459



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 24/197 (12%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            +++ EM   G+ P   ++  L+  YSK+G   +  G + +M   G++PD   +  ++ L
Sbjct: 162 ESLWNEMNANGVLPVNSTYGTLIDVYSKSGFKEEALGWLQRMLSQGMEPDEVTMGVVVQL 221

Query: 119 YGRLGQFEKMEEVLTAMEKGS--------YAADIS----------------TYNILINIY 154
           Y R  +F+K EE      +G            D+                 TYN LI+IY
Sbjct: 222 YKRAREFQKAEEFFRKWSRGEPLVIAIDHNTVDVRHVCNEVSHVNVCLNSHTYNTLIDIY 281

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           G+ G I+ +  +F  +  + + P  VT+ + +  Y      R    + + M +  C PD 
Sbjct: 282 GKAGQIQAVYEIFAKMIKQGVAPTTVTFNTMIHLYGNHGRIREVSLLLQRMEELRCPPDT 341

Query: 215 GTAKVLISACSSEDQIE 231
            T  +LIS     + I+
Sbjct: 342 RTYNILISVLVKHNNIK 358



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 72/152 (47%)

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
           N      V N++    +  ++   N+++++YG+ GQ + + E+   M K   A    T+N
Sbjct: 251 NTVDVRHVCNEVSHVNVCLNSHTYNTLIDIYGKAGQIQAVYEIFAKMIKQGVAPTTVTFN 310

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            +I++YG  G I ++  L Q +   R  PD  T+   ++   +    +   +   +M +A
Sbjct: 311 TMIHLYGNHGRIREVSLLLQRMEELRCPPDTRTYNILISVLVKHNNIKLAAKYLMKMKEA 370

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              PD  + + L+ A S+   +++   LVR M
Sbjct: 371 FLEPDLVSYRTLLYAYSTRKMVQEAEELVREM 402



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 87/188 (46%), Gaps = 34/188 (18%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ EM    + P    + +L+ A++  GNV K  G +++M  +G   +  + NS++ 
Sbjct: 568 AEELYIEMIGHTVKPDAIIYSVLINAFADVGNVIKATGYLDRMRNAGFVGNQAIYNSLMK 627

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP------ 171
           LY ++G  ++ ++  T ++    A  + + N +I++Y     +E+ + +F+SL       
Sbjct: 628 LYTKIGYLKEAQQTYTLLQSLDQAPSVFSSNCMIDLYTERLMVEQAKEIFESLKKNNIAN 687

Query: 172 -----------------------AKRLKP-----DVVTWTSRLAAYSRKKLYRRCLEIFE 203
                                  AK+++      D++++ + L  YS  +  R   E F+
Sbjct: 688 EFSYAMMLCMYKKIGRLDEAFQIAKQMRKQGLLTDLLSYNNVLGLYSMDRRLREAKETFK 747

Query: 204 EMIDAGCY 211
           EMI++G +
Sbjct: 748 EMIESGIH 755



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/148 (18%), Positives = 66/148 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A     +M+  G+      +  +++++ K   +   E +  +M    +KPD  + + ++N
Sbjct: 533 AKPYLNKMQEAGLVSDCILYCAVISSFVKLSQLDMAEELYIEMIGHTVKPDAIIYSVLIN 592

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  +G   K    L  M    +  + + YN L+ +Y + G++++ +  +  L +    P
Sbjct: 593 AFADVGNVIKATGYLDRMRNAGFVGNQAIYNSLMKLYTKIGYLKEAQQTYTLLQSLDQAP 652

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            V +    +  Y+ + +  +  EIFE +
Sbjct: 653 SVFSSNCMIDLYTERLMVEQAKEIFESL 680



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/216 (16%), Positives = 87/216 (40%), Gaps = 9/216 (4%)

Query: 37  FLLLQHTPNLFVFIFSIY---------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           F+  +    L V +F++          +  A  +F+ M++ GI     S+  L+   +  
Sbjct: 468 FMCCKQKKKLSVLVFNVMIKAYGIGKCYDKACQLFDSMEKFGIVANECSYSSLIHILASA 527

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
                 +  +N+M ++GL  D  +  ++++ + +L Q +  EE+   M   +   D   Y
Sbjct: 528 DKPHIAKPYLNKMQEAGLVSDCILYCAVISSFVKLSQLDMAEELYIEMIGHTVKPDAIIY 587

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           ++LIN +   G + K  G    +       +   + S +  Y++    +   + +  +  
Sbjct: 588 SVLINAFADVGNVIKATGYLDRMRNAGFVGNQAIYNSLMKLYTKIGYLKEAQQTYTLLQS 647

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
               P   ++  +I   +    +EQ   +  ++ K+
Sbjct: 648 LDQAPSVFSSNCMIDLYTERLMVEQAKEIFESLKKN 683



 Score = 44.7 bits (104), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N M  + G+  ++  +E +   M         STY  LI++Y + GF E+  G  Q + +
Sbjct: 146 NIMFWILGKERKWRFLESLWNEMNANGVLPVNSTYGTLIDVYSKSGFKEEALGWLQRMLS 205

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
           + ++PD VT    +  Y R + +++  E F +
Sbjct: 206 QGMEPDEVTMGVVVQLYKRAREFQKAEEFFRK 237



 Score = 40.4 bits (93), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 40  LQHTPNLF-------VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           L   P++F       ++   +    A  +FE +K+  I     S+ ++L  Y K G + +
Sbjct: 648 LDQAPSVFSSNCMIDLYTERLMVEQAKEIFESLKKNNIANEF-SYAMMLCMYKKIGRLDE 706

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
              +  QM K GL  D    N++L LY    +  + +E    M +      +S +NI
Sbjct: 707 AFQIAKQMRKQGLLTDLLSYNNVLGLYSMDRRLREAKETFKEMIESGIHYGVSKHNI 763



 Score = 37.7 bits (86), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 47/118 (39%)

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
           +KG Y  ++  YNI+  I G+      +E L+  + A  + P   T+ + +  YS+    
Sbjct: 134 QKGCYELNVIHYNIMFWILGKERKWRFLESLWNEMNANGVLPVNSTYGTLIDVYSKSGFK 193

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
              L   + M+  G  PD  T  V++       + ++     R   +     + I  N
Sbjct: 194 EEALGWLQRMLSQGMEPDEVTMGVVVQLYKRAREFQKAEEFFRKWSRGEPLVIAIDHN 251


>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
 gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 693

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F  + + G  P++ +  +L+ A S+ G+++  E V   M   GLK D    N++++
Sbjct: 427 AFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMH 486

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK---- 173
            YG+  Q  K+ E++  M     + D++TYNILI+     G+I++   +   L  +    
Sbjct: 487 GYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVP 546

Query: 174 -------------------------------RLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
                                          R+KPDVVT ++ L  Y + +   + + +F
Sbjct: 547 STLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLF 606

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +++DAG  PD      LI    S   IE+   L+  M
Sbjct: 607 NKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLM 644



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P +  +   L+    TG++ +   +  ++ + GL PD     +M++ Y  LG+ +K  
Sbjct: 369 LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAF 428

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           +   A+ K      ++T  ILI    R G I   E +F+++  + LK DVVT+ + +  Y
Sbjct: 429 QYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGY 488

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +     +  E+ +EM  AG  PD  T  +LI +      I++   ++  +
Sbjct: 489 GKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISEL 539



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 74/161 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  GI+P + ++ +L+ +    G + +   +I+++ + G  P T     ++  + 
Sbjct: 500 LIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFS 559

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G F++   +   M       D+ T + L++ Y +   +EK   LF  L    LKPDVV
Sbjct: 560 KRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVV 619

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            + + +  Y       +  E+   M+  G  P+  T   L+
Sbjct: 620 LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 11/178 (6%)

Query: 44  PNLFVFIFSIYFSD---------AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           PN+FV+  S + S+         A  +F+E+  LG+ P    +  ++  Y   G   K  
Sbjct: 371 PNIFVY--SSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAF 428

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
                + KSG  P       ++    R G     E V   M+      D+ TYN L++ Y
Sbjct: 429 QYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGY 488

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           G+   + K+  L   + +  + PDV T+   + +   +       EI  E+I  G  P
Sbjct: 489 GKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVP 546



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 89/202 (44%), Gaps = 4/202 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF     +   MK  GI P + +  + +    K G + +   V+ ++   G+  D+  ++
Sbjct: 286 YFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVS 345

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++ + ++G   K EE +  +       +I  Y+  ++     G + +   +FQ +   
Sbjct: 346 SVIDGFCKVG---KPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFEL 402

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD V +T+ +  Y       +  + F  ++ +G  P   T+ +LI ACS    I   
Sbjct: 403 GLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDA 462

Query: 234 TTLVRTMHKD-MKTALPIYFNL 254
            ++ R M  + +K  +  Y NL
Sbjct: 463 ESVFRNMKTEGLKLDVVTYNNL 484



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  ++  M  L + P + +   LL  Y K   + K   + N++  +GLKPD  + N+
Sbjct: 564 FQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNT 623

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +++ Y  +G  EK  E++  M +     + ST++ L+
Sbjct: 624 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 2/180 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+++M R+G+ P +    +L+ A  K+G+V K E ++N+M    + PD F  N++++LY 
Sbjct: 184 VYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYC 243

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G   +   +   ME+G  + DI TYN LI  + R G + +   LF+ +      P+ V
Sbjct: 244 KKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGA--TPNHV 301

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T+ +  Y R       L + E M   G +P   T   ++     E +I+    L+  M
Sbjct: 302 TYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEM 361



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 2/184 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VFE M+  G  P + +  +LL + +K         V  +M + G+ P+  + N ++
Sbjct: 145 DAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLI 204

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  EK E++L  ME      D+ TYN LI++Y + G   +  G+   +    + 
Sbjct: 205 HACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVS 264

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+VT+ S +  + R+   R  L +F E+   G  P+  T   LI      + +E+   L
Sbjct: 265 PDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRL 322

Query: 237 VRTM 240
              M
Sbjct: 323 REVM 326



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 2/184 (1%)

Query: 60  AVFEEMKRLGITPTMKSHML--LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           +V   + R+   P   S +L  L+  Y+ +        V   M   G KP       +LN
Sbjct: 111 SVLNAVVRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLN 170

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +      + +V   M +     +I  +N+LI+   + G +EK E L   + ++ + P
Sbjct: 171 SLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFP 230

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + ++ Y +K ++   L I + M   G  PD  T   LI     E ++ +   L 
Sbjct: 231 DLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLF 290

Query: 238 RTMH 241
           R ++
Sbjct: 291 REIN 294



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 2/180 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F E+   G TP   ++  L+  Y +  ++ +   +   M   GL P     NS+L
Sbjct: 285 EALRLFREIN--GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSIL 342

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 G+ +    +L  M +     D  T N LIN Y + G +     + + +    LK
Sbjct: 343 RKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLK 402

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+ + +  + +        E   EM+DAG  P   T   L+ +   +D  E V  L
Sbjct: 403 PDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRL 462



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 35/168 (20%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA+ +  EM    + P   +   L+ AY K G++     V  +M ++GLKPD F   +++
Sbjct: 353 DANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALI 412

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYA----------------------------------- 141
           + + +L + +  +E L  M    ++                                   
Sbjct: 413 HGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLF 472

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            DIS Y  LI    +   IE  E +F  +  K +K D V +TS   AY
Sbjct: 473 VDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAY 520


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 2/180 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+++M R+G+ P +    +L+ A  K+G+V K E ++N+M    + PD F  N++++LY 
Sbjct: 184 VYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYC 243

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G   +   +   ME+G  + DI TYN LI  + R G + +   LF+ +      P+ V
Sbjct: 244 KKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGA--TPNHV 301

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T+ +  Y R       L + E M   G +P   T   ++     E +I+    L+  M
Sbjct: 302 TYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEM 361



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 2/184 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VFE M+  G  P + +  +LL + +K         V  +M + G+ P+  + N ++
Sbjct: 145 DAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLI 204

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  EK E++L  ME      D+ TYN LI++Y + G   +  G+   +    + 
Sbjct: 205 HACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVS 264

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+VT+ S +  + R+   R  L +F E+   G  P+  T   LI      + +E+   L
Sbjct: 265 PDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRL 322

Query: 237 VRTM 240
              M
Sbjct: 323 REVM 326



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 2/184 (1%)

Query: 60  AVFEEMKRLGITPTMKSHML--LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           +V   + R+   P   S +L  L+  Y+ +        V   M   G KP       +LN
Sbjct: 111 SVLNAVVRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLN 170

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +      + +V   M +     +I  +N+LI+   + G +EK E L   + ++ + P
Sbjct: 171 SLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFP 230

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + ++ Y +K ++   L I + M   G  PD  T   LI     E ++ +   L 
Sbjct: 231 DLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLF 290

Query: 238 RTMH 241
           R ++
Sbjct: 291 REIN 294



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 2/180 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F E+   G TP   ++  L+  Y +  ++ +   +   M   GL P     NS+L
Sbjct: 285 EALRLFREIN--GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSIL 342

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 G+ +    +L  M +     D  T N LIN Y + G +     + + +    LK
Sbjct: 343 RKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLK 402

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+ + +  + +        E   EM+DAG  P   T   L+ +   +D  E V  L
Sbjct: 403 PDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRL 462



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 35/168 (20%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA+ +  EM    + P   +   L+ AY K G++     V  +M ++GLKPD F   +++
Sbjct: 353 DANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALI 412

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYA----------------------------------- 141
           + + +L + +  +E L  M    ++                                   
Sbjct: 413 HGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLF 472

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            DIS Y  LI    +   IE  E +F  +  K +K D V +TS   AY
Sbjct: 473 VDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAY 520


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 8/178 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  +F+E+        + S   +++ Y++TGN  +   +   M K+ ++PD   + 
Sbjct: 172 YIENAQKMFDEIP----VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 227

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   + G  E   +V + ++   + +++   N LI++Y + G +E   GLF+ LP K
Sbjct: 228 TVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYK 287

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               DV++W + +  Y+   LY+  L +F+EM+ +G  P+  T   ++ AC+    I+
Sbjct: 288 ----DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 341



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 29/225 (12%)

Query: 17  APHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEE----------MK 66
           +PH   F+ LPY      I+       PNL   I++  F   HA+  +          M 
Sbjct: 35  SPH---FDGLPYA-----ISVFETIQEPNLL--IWNTMFR-GHALSSDPVSALKLYVCMI 83

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE 126
            LG+ P   +   LL + +K+    + + +   + K G   D +V  S++++Y + G+ E
Sbjct: 84  SLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLE 143

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
              +V       S   D+ +Y  LI  Y   G+IE  + +F  +P K    DVV+W + +
Sbjct: 144 DAHKVFDE----SPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVK----DVVSWNAMI 195

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           + Y+    Y+  LE+F++M+     PD  T   ++SAC+    IE
Sbjct: 196 SGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 240



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 6/152 (3%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--GSYAADISTYNILINI 153
           +  +M +SG  P+   + S+L     LG  +    +   ++K     A   S    LI++
Sbjct: 311 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDM 370

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           Y + G IE    +F S+  K L     +W + +  ++         +IF  M   G  PD
Sbjct: 371 YAKCGDIEAAHQVFNSILHKSLS----SWNAMIFGFAMHGRADASFDIFSRMRKNGIEPD 426

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
             T   L+SACS    ++    + R+M +D K
Sbjct: 427 DITFVGLLSACSHSGMLDLGRHIFRSMTQDYK 458



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 6/153 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG--NVAKCEGVINQMHKSGLKPDTFVI 112
           + +A  +F+EM R G TP   + + +L A +  G  ++ +   V       G+   + + 
Sbjct: 305 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLR 364

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            S++++Y + G  E   +V  ++   S    +S++N +I  +   G  +    +F  +  
Sbjct: 365 TSLIDMYAKCGDIEAAHQVFNSILHKS----LSSWNAMIFGFAMHGRADASFDIFSRMRK 420

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             ++PD +T+   L+A S   +      IF  M
Sbjct: 421 NGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 453



 Score = 40.4 bits (93), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH VF  +    +  ++ S   ++  ++  G       + ++M K+G++PD      +L+
Sbjct: 380 AHQVFNSI----LHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLS 435

Query: 118 LYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                G  +    +  +M +       +  Y  +I++ G  G  ++ E +  ++    ++
Sbjct: 436 ACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTM---EME 492

Query: 177 PDVVTWTSRLAA 188
           PD V W S L A
Sbjct: 493 PDGVIWCSLLKA 504


>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
 gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
          Length = 575

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 105/269 (39%), Gaps = 61/269 (22%)

Query: 16  RAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIY-----FSDAHAVFEEMKRLGI 70
           ++ H W+FN +                    F+ + + Y     F+ A  V   M   G 
Sbjct: 107 QSQHWWDFNEMD-------------------FLMLITAYGKLGDFNGAEMVLRSMNGNGY 147

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P + SH  L+ AY + G     E +  +M  SG +P       +L  +    +F++ EE
Sbjct: 148 VPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSGPEPSALTYQIILKTFVEGNKFKEAEE 207

Query: 131 VLTAM---EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR------------- 174
           V   +   E      D   ++++I +  + G  EK   +F +L A+R             
Sbjct: 208 VFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKARKVF-ALMAERGVPQSTVTYNSLM 266

Query: 175 --------------------LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
                               L+PDVV++   + AY R +     L +FEEM+DAG  P  
Sbjct: 267 SFETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSH 326

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKD 243
               +L+ A +    +EQ   + ++M +D
Sbjct: 327 KAYNILLDAFAISGMVEQARVVFKSMRRD 355



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 87/181 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AVFEEM   G+ P+ K++ +LL A++ +G V +   V   M +    PD     +ML
Sbjct: 309 EALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCSYTTML 368

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y      E  E     + +     ++ TY  LI  + +   +EKM  +++ +    +K
Sbjct: 369 SAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQLNSIK 428

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +    T+ + AY + K +   +  ++EM   G  PD     +L+S   ++D+ ++ + L
Sbjct: 429 ANQTILTTIMDAYGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILLSLAKTQDEQKEASQL 488

Query: 237 V 237
           V
Sbjct: 489 V 489



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 22/229 (9%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+  +F   IY       +  A  VF  M   G+  +  ++  L++  +    V+K   +
Sbjct: 222 PDQKMFHMMIYMQKKAGNYEKARKVFALMAERGVPQSTVTYNSLMSFETNYKEVSK---I 278

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEK----MEEVLTAMEKGSYAADISTYNILIN 152
            +QM +SGL+PD      ++  YGR  + E+     EE+L A  + S+ A    YNIL++
Sbjct: 279 YDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKA----YNILLD 334

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            +   G +E+   +F+S+   R  PD+ ++T+ L+AY            F+ +   G  P
Sbjct: 335 AFAISGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKP 394

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGE 257
           +  T   LI   +  + +E++  +   M     K  +T L    + YG+
Sbjct: 395 NVVTYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIMDAYGK 443



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN--ILINIYGR 156
           ++ K GL P   V+ +++  + +L +++ + E+L  ++   +  D +  +  +LI  YG+
Sbjct: 72  RIKKDGL-PRDLVLGTLVR-FKQLKKWDLVSEILEWLQSQHWW-DFNEMDFLMLITAYGK 128

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G     E + +S+      P+VV+ T+ + AY R   Y     IF  M  +G  P   T
Sbjct: 129 LGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSGPEPSALT 188

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
            ++++      ++ ++   +  T+
Sbjct: 189 YQIILKTFVEGNKFKEAEEVFETL 212



 Score = 38.1 bits (87), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/115 (19%), Positives = 53/115 (46%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  L  ++ +     A   F+ +++ G+ P + ++  L+  ++K  N+ K   +  
Sbjct: 361 LCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYE 420

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M  + +K +  ++ ++++ YG+   F         ME      D    NIL+++
Sbjct: 421 EMQLNSIKANQTILTTIMDAYGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILLSL 475


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 1/207 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V E +   G+ PT   +  L+  Y +  ++     +  QM    ++PD    N+++N
Sbjct: 175 AEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 234

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +L    K E+++  MEK      + T+N LI+ YG  G +EK   +   +  K +K 
Sbjct: 235 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 294

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV+++ S + A+ +       + I ++MI     P+      +I A       EQ   LV
Sbjct: 295 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLV 354

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSN 264
             M     +A  + +NL   KG+ RS+
Sbjct: 355 EKMKNSGVSASIVTYNLL-LKGLCRSS 380



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V  +M++ GI   + S   ++ A+ K G + +   +++ M    + P+  V NS+++ Y 
Sbjct: 283 VLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI 342

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G  E+   ++  M+    +A I TYN+L+    R   I++ E L  +L  + L+PDVV
Sbjct: 343 ESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 402

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + ++A   K    + LE+ +EM   G  P   T   L+SA +S  ++  +  L + M
Sbjct: 403 SYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 462

Query: 241 -HKDMKTALPIY 251
            HK+++ +  IY
Sbjct: 463 LHKNVEPSSSIY 474



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 86/184 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE+MK   I P   ++  L+    K   V K E ++ +M KSG+ P     N++++
Sbjct: 210 AFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 269

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG  GQ EK   VL+ M++    +D+ ++  ++  + + G I +   +   +  K + P
Sbjct: 270 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 329

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   + S + AY       +   + E+M ++G      T  +L+       QI++   L+
Sbjct: 330 NAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 389

Query: 238 RTMH 241
            T+ 
Sbjct: 390 YTLR 393



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 4/204 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++F E  + G+     +  +LL    K G VAK E V+  +  +GL P T + N+++N Y
Sbjct: 142 SLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGY 201

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++        +   M+      D  TYN LIN   +   + K E L   +    + P V
Sbjct: 202 CQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSV 261

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVR 238
            T+ + + AY       +C  +  +M   G   D  +   ++ A C +    E V  L  
Sbjct: 262 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 321

Query: 239 TMHKDMKTALPIY---FNLYGEKG 259
            ++KD+     +Y    + Y E G
Sbjct: 322 MIYKDVAPNAQVYNSIIDAYIESG 345



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 74/152 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E+MK  G++ ++ ++ LLL    ++  + + E +I  +   GL+PD    N++++
Sbjct: 350 AFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIIS 409

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G  +K  E+L  M K      + TY+ L++     G +  ME L+Q +  K ++P
Sbjct: 410 ACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEP 469

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
               +   + AY R +   +   + +EM + G
Sbjct: 470 SSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 501



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 35/222 (15%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  VF+EM  +G+ P   ++  ++  + K G++     + +QM   G KP+    N +
Sbjct: 33  SDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVL 92

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL------------------------- 150
           L+   R G+ ++   ++  M   S   D  TY+IL                         
Sbjct: 93  LSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGV 152

Query: 151 ----------INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
                     +N   + G + K E + + L    L P  V + + +  Y + +  R    
Sbjct: 153 MLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 212

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           IFE+M      PD  T   LI+     + + +   LV  M K
Sbjct: 213 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEK 254



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/186 (17%), Positives = 83/186 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+ ++M    + P  + +  ++ AY ++G+  +   ++ +M  SG+       N +L
Sbjct: 314 EAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLL 373

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  Q ++ EE++  +       D+ +YN +I+     G  +K   L Q +    ++
Sbjct: 374 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 433

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P + T+ + ++A +          ++++M+     P      +++ A    +   +V +L
Sbjct: 434 PTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASL 493

Query: 237 VRTMHK 242
            + M +
Sbjct: 494 KKEMSE 499



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 5/186 (2%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P   S+ +++    ++G  +    V ++M   G+ P+    N+M++ + + G  E    +
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
              M       +I TYN+L++   R G +++   L   + +  + PD  T++      +R
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI---EQVTTLVRTMHKDMKTAL 248
               R  L +F E +  G      T  +L++    + ++   EQV  ++  +H  +    
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEML--VHTGLVPTT 191

Query: 249 PIYFNL 254
            IY  L
Sbjct: 192 VIYNTL 197



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 42/86 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM + GI PT++++  L++A +  G V   E +  QM    ++P + +   M++
Sbjct: 420 ALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 479

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAAD 143
            Y R     K+  +   M +   A D
Sbjct: 480 AYVRCENDSKVASLKKEMSEKGIAFD 505



 Score = 37.7 bits (86), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/127 (19%), Positives = 57/127 (44%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S    +A  +   ++  G+ P + S+  +++A    G+  K   ++ +M+K G++P    
Sbjct: 379 SSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRT 438

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            +++++     G+   ME +   M   +     S Y I+++ Y R     K+  L + + 
Sbjct: 439 YHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMS 498

Query: 172 AKRLKPD 178
            K +  D
Sbjct: 499 EKGIAFD 505


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 1/207 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V E +   G+ PT   +  L+  Y +  ++     +  QM    ++PD    N+++N
Sbjct: 353 AEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 412

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +L    K E+++  MEK      + T+N LI+ YG  G +EK   +   +  K +K 
Sbjct: 413 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 472

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV+++ S + A+ +       + I ++MI     P+      +I A       EQ   LV
Sbjct: 473 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLV 532

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSN 264
             M     +A  + +NL   KG+ RS+
Sbjct: 533 EKMKNSGVSASIVTYNLL-LKGLCRSS 558



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V  +M++ GI   + S   ++ A+ K G + +   +++ M    + P+  V NS+++ Y 
Sbjct: 461 VLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI 520

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G  E+   ++  M+    +A I TYN+L+    R   I++ E L  +L  + L+PDVV
Sbjct: 521 ESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 580

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + ++A   K    + LE+ +EM   G  P   T   L+SA +S  ++  +  L + M
Sbjct: 581 SYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 640

Query: 241 -HKDMKTALPIY 251
            HK+++ +  IY
Sbjct: 641 LHKNVEPSSSIY 652



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 86/184 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE+MK   I P   ++  L+    K   V K E ++ +M KSG+ P     N++++
Sbjct: 388 AFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 447

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG  GQ EK   VL+ M++    +D+ ++  ++  + + G I +   +   +  K + P
Sbjct: 448 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 507

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   + S + AY       +   + E+M ++G      T  +L+       QI++   L+
Sbjct: 508 NAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 567

Query: 238 RTMH 241
            T+ 
Sbjct: 568 YTLR 571



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 4/204 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++F E  + G+     +  +LL    K G VAK E V+  +  +GL P T + N+++N Y
Sbjct: 320 SLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGY 379

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++        +   M+      D  TYN LIN   +   + K E L   +    + P V
Sbjct: 380 CQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSV 439

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVR 238
            T+ + + AY       +C  +  +M   G   D  +   ++ A C +    E V  L  
Sbjct: 440 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 499

Query: 239 TMHKDMKTALPIY---FNLYGEKG 259
            ++KD+     +Y    + Y E G
Sbjct: 500 MIYKDVAPNAQVYNSIIDAYIESG 523



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           +I S     A  + E+MK  G++ ++ ++ LLL    ++  + + E +I  +   GL+PD
Sbjct: 519 YIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPD 578

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N++++     G  +K  E+L  M K      + TY+ L++     G +  ME L+Q
Sbjct: 579 VVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQ 638

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +  K ++P    +   + AY R +   +   + +EM + G
Sbjct: 639 QMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 679



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 35/222 (15%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  VF+EM  +G+ P   ++  ++  + K G++     + +QM   G KP+    N +
Sbjct: 211 SDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVL 270

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL------------------------- 150
           L+   R G+ ++   ++  M   S   D  TY+IL                         
Sbjct: 271 LSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGV 330

Query: 151 ----------INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
                     +N   + G + K E + + L    L P  V + + +  Y + +  R    
Sbjct: 331 MLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 390

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           IFE+M      PD  T   LI+     + + +   LV  M K
Sbjct: 391 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEK 432



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/186 (17%), Positives = 83/186 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+ ++M    + P  + +  ++ AY ++G+  +   ++ +M  SG+       N +L
Sbjct: 492 EAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLL 551

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  Q ++ EE++  +       D+ +YN +I+     G  +K   L Q +    ++
Sbjct: 552 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 611

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P + T+ + ++A +          ++++M+     P      +++ A    +   +V +L
Sbjct: 612 PTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASL 671

Query: 237 VRTMHK 242
            + M +
Sbjct: 672 KKEMSE 677



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 85/204 (41%), Gaps = 6/204 (2%)

Query: 57  DAHAVFEEMKRLGIT-----PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           D       ++R+G +     P   S+ +++    ++G  +    V ++M   G+ P+   
Sbjct: 172 DLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWIT 231

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N+M++ + + G  E    +   M       +I TYN+L++   R G +++   L   + 
Sbjct: 232 YNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMA 291

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           +  + PD  T++      +R    R  L +F E +  G      T  +L++    + ++ 
Sbjct: 292 SHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVA 351

Query: 232 QVTTLVRTM-HKDMKTALPIYFNL 254
           +   ++  + H  +     IY  L
Sbjct: 352 KAEQVLEMLVHTGLVPTTVIYNTL 375



 Score = 40.8 bits (94), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 2/171 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P++ S  LLL +    G  A        +  +G +PDTF  N ++      G  +    +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 132 LTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           +  M   +G+   D  +YN++I    R G       +F  +    + P+ +T+ + +  +
Sbjct: 180 VRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGH 239

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +         + ++M+  G  P+  T  VL+S      ++++   L+  M
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEM 290



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 42/86 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM + GI PT++++  L++A +  G V   E +  QM    ++P + +   M++
Sbjct: 598 ALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 657

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAAD 143
            Y R     K+  +   M +   A D
Sbjct: 658 AYVRCENDSKVASLKKEMSEKGIAFD 683



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/127 (19%), Positives = 57/127 (44%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S    +A  +   ++  G+ P + S+  +++A    G+  K   ++ +M+K G++P    
Sbjct: 557 SSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRT 616

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            +++++     G+   ME +   M   +     S Y I+++ Y R     K+  L + + 
Sbjct: 617 YHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMS 676

Query: 172 AKRLKPD 178
            K +  D
Sbjct: 677 EKGIAFD 683


>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
 gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
          Length = 388

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 36/207 (17%)

Query: 55  FSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           F++  A   EM  +    P + +    + A+  +G +   E    +   +G++P+    N
Sbjct: 152 FAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFN 211

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L+ YG+ G ++KM  V+  M++  Y+  I TYN++I+ +GR G +++ME LF+ + ++
Sbjct: 212 ILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSE 271

Query: 174 RLKPDVVTWTSRLAAYSR---------------------KKLYRRCL------------- 199
           R+KP  VT  S + AY                         ++  CL             
Sbjct: 272 RIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEM 331

Query: 200 -EIFEEMIDAGCYPDGGTAKVLISACS 225
            E+ E M + GC PD  T + +I A S
Sbjct: 332 KEVLELMEEKGCKPDKVTYRTMIKAYS 358



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 1/200 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           F     +  +M+ LGI P   ++  ++ AY K    A+ E  + +M  +   +PD + +N
Sbjct: 117 FDKVQVLLSDMESLGIRPNTVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMN 176

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S +  +G  GQ E ME      +      +I T+NIL++ YG+ G  +KM  + + +   
Sbjct: 177 STIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRY 236

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
                +VT+   + A+ R    ++   +F  M      P   T   L+ A     + E++
Sbjct: 237 HYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKI 296

Query: 234 TTLVRTMHKDMKTALPIYFN 253
            +++R +     T   ++FN
Sbjct: 297 GSVLRFIENSDVTLDTVFFN 316



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 93/190 (48%), Gaps = 8/190 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSML 116
           AH +F+ M   G   T +S+  LL+AY ++G   K   ++ +M  +   +PD    + ++
Sbjct: 49  AHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILI 108

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKRL 175
               ++  F+K++ +L+ ME      +  TYN +I+ YG+     +ME  L + L  +  
Sbjct: 109 KSCLQVFAFDKVQVLLSDMESLGIRPNTVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDC 168

Query: 176 KPDVVTWTSRLAAY---SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +PDV T  S + A+    + ++   C E F+    AG  P+  T  +L+ +       ++
Sbjct: 169 EPDVWTMNSTIRAFGGSGQMEMMENCYEKFQ---SAGIEPNIKTFNILLDSYGKAGNYQK 225

Query: 233 VTTLVRTMHK 242
           ++ ++  M +
Sbjct: 226 MSAVMEYMQR 235



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 71/140 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +    AV E M+R   + T+ ++ +++ A+ + G++ + E +   M    +KP    + S
Sbjct: 223 YQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 282

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y   G+ EK+  VL  +E      D   +N L++ YGR     +M+ + + +  K 
Sbjct: 283 LVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELMEEKG 342

Query: 175 LKPDVVTWTSRLAAYSRKKL 194
            KPD VT+ + + AYS K +
Sbjct: 343 CKPDKVTYRTMIKAYSIKGM 362



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 2/191 (1%)

Query: 55  FSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           F  A ++ EEMK      P + ++ +L+ +  +     K + +++ M   G++P+T   N
Sbjct: 81  FDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTYN 140

Query: 114 SMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++++ YG+   F +ME  L  M  +     D+ T N  I  +G  G +E ME  ++   +
Sbjct: 141 TVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQS 200

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             ++P++ T+   L +Y +   Y++   + E M          T  V+I A      ++Q
Sbjct: 201 AGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQ 260

Query: 233 VTTLVRTMHKD 243
           +  L R M  +
Sbjct: 261 MEYLFRLMRSE 271



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  M+   I P+  +   L+ AY + G   K   V+  +  S +  DT   N +++ YG
Sbjct: 264 LFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYG 323

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI---EKMEGLFQSLPAKR--- 174
           RL  F +M+EVL  ME+     D  TY  +I  Y   G     +K+  L  S+   R   
Sbjct: 324 RLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRNLLGSVEVTRSPK 383

Query: 175 LKPD 178
            KPD
Sbjct: 384 KKPD 387



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 3/174 (1%)

Query: 61  VFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           VFE ++ +L   P    ++ L+    K     K   +   M   G         ++L+ Y
Sbjct: 16  VFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAY 75

Query: 120 GRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           GR G F+K   ++  M+       D+ TY+ILI    +    +K++ L   + +  ++P+
Sbjct: 76  GRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPN 135

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIE 231
            VT+ + + AY + K++        EM+    C PD  T    I A     Q+E
Sbjct: 136 TVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQME 189


>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
 gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F  + + G  P++ +  +L+ A S+ G+++  E V   M   GLK D    N++++
Sbjct: 427 AFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMH 486

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK---- 173
            YG+  Q  K+ E++  M     + D++TYNILI+     G+I++   +   L  +    
Sbjct: 487 GYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVP 546

Query: 174 -------------------------------RLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
                                          R+KPDVVT ++ L  Y + +   + + +F
Sbjct: 547 STLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLF 606

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +++DAG  PD      LI    S   IE+   L+  M
Sbjct: 607 NKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLM 644



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P +  +   L+    TG++ +   +  ++ + GL PD     +M++ Y  LG+ +K  
Sbjct: 369 LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAF 428

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           +   A+ K      ++T  ILI    R G I   E +F+++  + LK DVVT+ + +  Y
Sbjct: 429 QYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGY 488

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +     +  E+ +EM  AG  PD  T  +LI +      I++   ++  +
Sbjct: 489 GKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISEL 539



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 74/161 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  GI+P + ++ +L+ +    G + +   +I+++ + G  P T     ++  + 
Sbjct: 500 LIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFS 559

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G F++   +   M       D+ T + L++ Y +   +EK   LF  L    LKPDVV
Sbjct: 560 KRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVV 619

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            + + +  Y       +  E+   M+  G  P+  T   L+
Sbjct: 620 LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 11/178 (6%)

Query: 44  PNLFVFIFSIYFSD---------AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           PN+FV+  S + S+         A  +F+E+  LG+ P    +  ++  Y   G   K  
Sbjct: 371 PNIFVY--SSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAF 428

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
                + KSG  P       ++    R G     E V   M+      D+ TYN L++ Y
Sbjct: 429 QYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGY 488

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           G+   + K+  L   + +  + PDV T+   + +   +       EI  E+I  G  P
Sbjct: 489 GKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVP 546



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 89/202 (44%), Gaps = 4/202 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF     +   MK  GI P + +  + +    K G + +   V+ ++   G+  D+  ++
Sbjct: 286 YFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVS 345

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++ + ++G   K EE +  +       +I  Y+  ++     G + +   +FQ +   
Sbjct: 346 SVIDGFCKVG---KPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFEL 402

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD V +T+ +  Y       +  + F  ++ +G  P   T+ +LI ACS    I   
Sbjct: 403 GLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDA 462

Query: 234 TTLVRTMHKD-MKTALPIYFNL 254
            ++ R M  + +K  +  Y NL
Sbjct: 463 ESVFRNMKTEGLKLDVVTYNNL 484



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  ++  M  L + P + +   LL  Y K   + K   + N++  +GLKPD  + N+
Sbjct: 564 FQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNT 623

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +++ Y  +G  EK  E++  M +     + ST++ L+
Sbjct: 624 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660


>gi|48716454|dbj|BAD23061.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           [Oryza sativa Japonica Group]
          Length = 580

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 1/178 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+ M+   + P   +   LLTA +K+   A    V +QM ++G+  +T V N+ML
Sbjct: 128 DALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAML 187

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++  + G     E ++T M+      D  ++N +I +Y R G   +   + + +  + +K
Sbjct: 188 HVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVK 247

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQV 233
            DVVTW S +    +++  +   ++  EM  AG  PD  T   L+   C + D  E V
Sbjct: 248 ADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAV 305



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 2/186 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           + A  VF++M R G+      +  +L    K G+ A  E ++ +M  +G+  D F  N++
Sbjct: 162 ATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTV 221

Query: 116 LNLYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           + LY R G Q+E M  V   ME     AD+ T+N LI+   +   +++   L + +    
Sbjct: 222 IALYCRKGMQYEAM-CVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAG 280

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD VT+T+ +  Y R       +++  EM   G  P   T   ++     + ++++V 
Sbjct: 281 VAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVN 340

Query: 235 TLVRTM 240
            L+  M
Sbjct: 341 VLLNEM 346



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 84/185 (45%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V E M+  G+   + +   L+    K   V +   ++ +M  +G+ PD     +++
Sbjct: 233 EAMCVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLV 292

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G  E+  ++   ME       ++TYN ++      G ++++  L   +  ++++
Sbjct: 293 DGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQ 352

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTT 235
            D VT  + + AY ++      L++   M+++G   D  T K L+   C +++  E    
Sbjct: 353 ADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEA 412

Query: 236 LVRTM 240
           L   M
Sbjct: 413 LFEMM 417


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 1/172 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+EM    + P + +    +TA  K G + +   + + M   G KPD     ++L+ Y 
Sbjct: 245 VFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYA 304

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G    M+ +   M       D   +N LIN Y R G ++K   +F+ +  + + PD++
Sbjct: 305 TAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDII 364

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
           T+++ ++A+ R       +E F  MID G  PD      LI   C+  D ++
Sbjct: 365 TFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVK 416



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 84/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +F +M+  GI P + ++  L+    KT  + K E V+ QM  +G++P+    N +++
Sbjct: 172 AHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIH 231

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G +++   V   M       D+   N  +    + G I++   +F S+  K  KP
Sbjct: 232 GYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKP 291

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV+++ + L  Y+          +F  M+  G  PD      LI+A +    +++   + 
Sbjct: 292 DVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMF 351

Query: 238 RTMHK 242
             M K
Sbjct: 352 EDMTK 356



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF  + R G+ P + S+  L+  +SK G V K   +  +M + G+ P+    +S++N   
Sbjct: 140 VFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLC 199

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  + +K E VL  M       +  TYN LI+ Y   G  ++   +F+ + +  L PDV 
Sbjct: 200 KTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVG 259

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
              S + A  +    +   +IF+ M+  G  PD
Sbjct: 260 NCNSFMTALCKHGRIKEARDIFDSMVLKGPKPD 292



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 91/186 (48%), Gaps = 3/186 (1%)

Query: 58  AHAVFEEMKRLGI---TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           A  +F+ M R       PT+ ++ +L+  Y +         V  ++ ++GL PD F  N+
Sbjct: 99  AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 158

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ +K  ++   ME+     ++ TY+ LIN   +   ++K E + + +    
Sbjct: 159 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 218

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+ +T+   +  YS   +++  + +F+EM  +   PD G     ++A     +I++  
Sbjct: 219 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 278

Query: 235 TLVRTM 240
            +  +M
Sbjct: 279 DIFDSM 284



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 4/186 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M   G+ P   ++  L+  YS +G   +   V  +M  S L PD    NS + 
Sbjct: 207 AERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMT 266

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  ++  +M       D+ +Y  L++ Y   G I  M+ LF  +  + + P
Sbjct: 267 ALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVP 326

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
           D   + + + AY+R  +  + L +FE+M   G  PD  T   +ISA       +D +E+ 
Sbjct: 327 DRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF 386

Query: 234 TTLVRT 239
             ++ T
Sbjct: 387 NHMIDT 392



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ M   G  P + S+  LL  Y+  G +A  + + N M   G+ PD  V N+++
Sbjct: 276 EARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLI 335

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y RLG  +K   +   M K     DI T++ +I+ + R G ++     F  +    + 
Sbjct: 336 NAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVP 395

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           PD   ++  +     ++   +  E+  +M+  G  P
Sbjct: 396 PDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP 431



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 1/153 (0%)

Query: 58  AHAVFEEMKRLGITP-TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +  +M   GI P  +K    ++    K G VA+ + V++ +  +G +P+    NS++
Sbjct: 417 AKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLV 476

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y  +G  ++   +L +ME      DI TYN L++ Y + G I+    LF+ +  KR+ 
Sbjct: 477 DGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVT 536

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
              V++   L    + +      E+F EMI++G
Sbjct: 537 LTSVSYNIILHGLFQARRTIVAKEMFHEMIESG 569



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 85/195 (43%), Gaps = 1/195 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FE+M + G+ P + +   +++A+ + G +       N M  +G+ PDT V + ++    
Sbjct: 350 MFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQC 409

Query: 121 RLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
                 K +E+++ M  KG     I  +  +IN   + G + + + +   +     +P++
Sbjct: 410 NRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNL 469

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +T+ S +  Y      +  + + + M   G  PD  T   L+       +I+   TL R 
Sbjct: 470 ITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRD 529

Query: 240 MHKDMKTALPIYFNL 254
           M     T   + +N+
Sbjct: 530 MLHKRVTLTSVSYNI 544



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 29/216 (13%)

Query: 58  AHAVFEEMKRLG-ITPTMKSHML------------------LLTAYSKTGNVAKCEGV-- 96
           AHA F E  R G + P    H+                   LL+A ++    A C  V  
Sbjct: 38  AHAAFRERLRSGTLGPDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPA 97

Query: 97  -----INQMHKSGL---KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
                  +M +       P  +  N ++N Y R  + +    V   + +     D+ +YN
Sbjct: 98  LAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYN 157

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            LI+ + + G ++K   LF  +  + + P+VVT++S +    + K   +   +  +M+ A
Sbjct: 158 ALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGA 217

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
           G  P+  T   LI   S+    ++   + + M   +
Sbjct: 218 GVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSL 253



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/102 (20%), Positives = 51/102 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  +   G+ PT+ ++ +++T   K  +    + + + M KS   PD+ ++N ++
Sbjct: 627 EAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEII 686

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +    G+  K    L+ ++K     + +T ++LI ++   G
Sbjct: 687 RMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNG 728


>gi|326435879|gb|EGD81449.1| hypothetical protein PTSG_11845 [Salpingoeca sp. ATCC 50818]
          Length = 695

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 74/156 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+  EM+  G+ P  ++  +L+  Y+  G V     VI++M + G +P T   N + N
Sbjct: 483 AEALLHEMQLHGMQPCAQTFNILVYCYAMAGEVGTARAVIDRMIECGERPLTVSFNVLAN 542

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR    + +  ++T M + + A ++ TYN LI  +     ++K E     +    L  
Sbjct: 543 AYGRQHNLDALRALVTDMAEANVAPNLVTYNTLIKSFCMNHQVDKAEATVGRMIESGLAG 602

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D+ TW +   AY+RK      L  F   I  GC P+
Sbjct: 603 DLSTWGALAGAYARKGHIDSLLLTFRRCIAGGCLPN 638



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 74/184 (40%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AVF+ M R GI PT  ++  L+ AY+ + +      V++ M   GL P+       +
Sbjct: 412 EARAVFDTMVRSGIAPTTTAYNKLVKAYAHSRSPELAARVVDTMRGDGLLPNETTYRCWM 471

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y R       E +L  M+         T+NIL+  Y   G +     +   +     +
Sbjct: 472 YGYARTRDPAGAEALLHEMQLHGMQPCAQTFNILVYCYAMAGEVGTARAVIDRMIECGER 531

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P  V++     AY R+        +  +M +A   P+  T   LI +     Q+++    
Sbjct: 532 PLTVSFNVLANAYGRQHNLDALRALVTDMAEANVAPNLVTYNTLIKSFCMNHQVDKAEAT 591

Query: 237 VRTM 240
           V  M
Sbjct: 592 VGRM 595



 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 72/181 (39%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+F+ ++R     ++  ++ ++ A ++T    +   V + M +SG+ P T   N ++  Y
Sbjct: 380 AMFDSLQRQHTRLSLSVYLCIMDALAQTAQPQEARAVFDTMVRSGIAPTTTAYNKLVKAY 439

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
                 E    V+  M       + +TY   +  Y R       E L   +    ++P  
Sbjct: 440 AHSRSPELAARVVDTMRGDGLLPNETTYRCWMYGYARTRDPAGAEALLHEMQLHGMQPCA 499

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+   +  Y+          + + MI+ G  P   +  VL +A   +  ++ +  LV  
Sbjct: 500 QTFNILVYCYAMAGEVGTARAVIDRMIECGERPLTVSFNVLANAYGRQHNLDALRALVTD 559

Query: 240 M 240
           M
Sbjct: 560 M 560


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 123/275 (44%), Gaps = 35/275 (12%)

Query: 10  DLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEE----- 64
           +LCV   +PH   F+ LPY +      F  +Q  PN  ++   I     HA+  +     
Sbjct: 3   ELCVP--SPH---FDGLPYATSV----FETIQE-PNQLIWNTMIR---GHALSSDPVSSL 49

Query: 65  -----MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
                M  LG+ P   +   LL + +K+    + + +  Q+ K G   D +V  S++++Y
Sbjct: 50  TLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMY 109

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               Q  ++E+     ++ S+  D+ +Y  LI  Y   G I   + LF  +P K    DV
Sbjct: 110 V---QNWRLEDAYKVFDRSSHR-DVVSYTALITGYASRGDIRSAQKLFDEIPVK----DV 161

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE---QVTTL 236
           V+W + ++ Y+    Y+  LE+FEEM+     PD  T   ++SAC+    IE   QV + 
Sbjct: 162 VSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSW 221

Query: 237 VRTMHKDMKTAL-PIYFNLYGEKGVARSNLGQYIG 270
           V     D    +     +LY + G   +  G + G
Sbjct: 222 VDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQG 256



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++ Y++TG   +   +  +M K  ++PD     ++L+     G  E   +V + ++   
Sbjct: 167 MISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHG 226

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           + +++   N LI++Y + G +E   GLFQ L  K    DV++W + +  Y+   LY+  L
Sbjct: 227 FDSNLKIVNALIDLYSKCGEVETACGLFQGLSYK----DVISWNTLIGGYTHMNLYKEAL 282

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACS 225
            +F+EM+ +G  P+  T   ++ AC+
Sbjct: 283 LLFQEMLRSGETPNDVTMLSVLPACA 308



 Score = 44.3 bits (103), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG----SYAADISTYNILI 151
           +  +M +SG  P+   + S+L     LG  +    +   ++K     + A+ + T   LI
Sbjct: 284 LFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LI 341

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           ++Y + G IE    +F S+  K L     +W + +  ++         ++F  M   G  
Sbjct: 342 DMYAKCGDIEAAHQVFNSMLHKSLS----SWNAMIFGFAMHGRADASFDLFSRMRKIGIE 397

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
           PD  T   L+SACS    ++    + R+M +D K
Sbjct: 398 PDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYK 431



 Score = 43.9 bits (102), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 6/153 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG--NVAKCEGVINQMHKSGLKPDTFVI 112
           + +A  +F+EM R G TP   + + +L A +  G  ++ +   V       G+   + + 
Sbjct: 278 YKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 337

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            S++++Y + G  E   +V  +M   S    +S++N +I  +   G  +    LF  +  
Sbjct: 338 TSLIDMYAKCGDIEAAHQVFNSMLHKS----LSSWNAMIFGFAMHGRADASFDLFSRMRK 393

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             ++PD +T+   L+A S   +      IF  M
Sbjct: 394 IGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 426


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 5/192 (2%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M + G+ P + +   L+  + K G + +     ++M    + P+T   N+++N YG++G 
Sbjct: 260 MGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGN 319

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                +V   M +    ADI TYN LI    + G  +K   L + L  + L P+  T+++
Sbjct: 320 SNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSA 379

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-----RT 239
            ++    +K   R  ++++ M+ +GC+P+  T K+L SA    +  E    ++     R+
Sbjct: 380 LISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARS 439

Query: 240 MHKDMKTALPIY 251
           M  D  T L IY
Sbjct: 440 MASDSNTLLEIY 451



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 85/186 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + EM+R  I+P   +  L+L+A  K+G + K   V+ +M   G+ P+    N+++ 
Sbjct: 183 ALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIA 242

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G      ++   M K     ++ T+N LI+ + + G + +    F  +    + P
Sbjct: 243 GHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTP 302

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + VT+ + +  Y +        +++EEM+  G   D  T   LI     E + ++   LV
Sbjct: 303 NTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLV 362

Query: 238 RTMHKD 243
           + + K+
Sbjct: 363 KELDKE 368


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 96/201 (47%), Gaps = 5/201 (2%)

Query: 57  DAHAVFEEMKRLGIT--PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           D+  + EEM+ LG+   PT+ S   +L  + K G + + EG ++ M + G+KP+    N+
Sbjct: 314 DSMKLVEEMEELGLATLPTLNS---VLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNT 370

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y RLG+ ++      AM     + D+ TYN LI  +        + GL   +    
Sbjct: 371 LIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETG 430

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +K D+VT+   + A   K   R+ +++ +EM++ G  P   T   +I+    +   +   
Sbjct: 431 VKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAH 490

Query: 235 TLVRTMHKDMKTALPIYFNLY 255
            +   M K  K A  +  N++
Sbjct: 491 DIRIRMEKCKKRANVVTCNVF 511



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 3/188 (1%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY---GRLGQFE 126
           ++P   +  ++++   KTG + K   V   M   GL P     N++++ Y   GR G+  
Sbjct: 184 VSPDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMY 243

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
            ++ +L  M +   + ++ T+N+LIN Y +   I     +F+ +    +  ++VT+TS +
Sbjct: 244 HVDMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLV 303

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
           +   R+      +++ EEM + G         VL   C     +E    +     K MK 
Sbjct: 304 SGLCREGKVEDSMKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKP 363

Query: 247 ALPIYFNL 254
            +  Y  L
Sbjct: 364 NVVTYNTL 371



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 65/134 (48%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S  +     + +EMK  G+   + ++ +L+ A    G V K   ++++M + GL+P 
Sbjct: 410 FTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPK 469

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N+++N +   G  +   ++   MEK    A++ T N+ +  + + G +++   +  
Sbjct: 470 HRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLN 529

Query: 169 SLPAKRLKPDVVTW 182
            +  K L P+ +T+
Sbjct: 530 EMLEKGLVPNRITY 543



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/193 (18%), Positives = 84/193 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A A    M   GI+P +K++  L+T ++ + +     G++++M ++G+K D    N 
Sbjct: 381 MKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNV 440

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G+  K  ++L  M +        TYN +IN +   G  +    +   +   +
Sbjct: 441 LIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCK 500

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            + +VVT    L  + +         +  EM++ G  P+  T +++ S    +  +  + 
Sbjct: 501 KRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYVPDIR 560

Query: 235 TLVRTMHKDMKTA 247
                + K++ ++
Sbjct: 561 GYAADVSKNLTSS 573


>gi|242053311|ref|XP_002455801.1| hypothetical protein SORBIDRAFT_03g025430 [Sorghum bicolor]
 gi|241927776|gb|EES00921.1| hypothetical protein SORBIDRAFT_03g025430 [Sorghum bicolor]
          Length = 642

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 97/200 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A   F++MK  G  P +  +  LL AYS+  +  K E ++  +  SGL P+  ++ 
Sbjct: 235 YCEEAEVYFQKMKDEGHCPNLFHYSSLLNAYSENSDYEKAELLMKDLRSSGLTPNKVILT 294

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L +Y + G FEK +E+LT +E   +A D   Y ILI+   +GG I++ + LF  +  K
Sbjct: 295 TLLKVYSKGGLFEKAKELLTELEASGFAQDEMPYCILIDGLVKGGKIQEAKILFNEMKEK 354

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +K D   ++  ++A  R   +    ++ +E        D       +    S + +E V
Sbjct: 355 GVKSDGYAFSIMISALHRGGHHEESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESV 414

Query: 234 TTLVRTMHKDMKTALPIYFN 253
             +++ M +   +   I FN
Sbjct: 415 MRMLKKMDELNISPDNITFN 434



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 1/181 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSK-TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +++EM R G++P   ++  LL+   K      K   +IN M   GL+ D  +  ++L + 
Sbjct: 171 LYDEMIREGLSPDPFTYSTLLSGCMKLKQGYTKAMELINDMKSRGLQMDIVIYGTLLAIC 230

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
                 E+ E     M+   +  ++  Y+ L+N Y      EK E L + L +  L P+ 
Sbjct: 231 ASHNYCEEAEVYFQKMKDEGHCPNLFHYSSLLNAYSENSDYEKAELLMKDLRSSGLTPNK 290

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           V  T+ L  YS+  L+ +  E+  E+  +G   D     +LI       +I++   L   
Sbjct: 291 VILTTLLKVYSKGGLFEKAKELLTELEASGFAQDEMPYCILIDGLVKGGKIQEAKILFNE 350

Query: 240 M 240
           M
Sbjct: 351 M 351



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 83/187 (44%), Gaps = 7/187 (3%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H PNLF +  + + Y     +  A  + ++++  G+TP       LL  YSK G   K +
Sbjct: 251 HCPNLFHYSSLLNAYSENSDYEKAELLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKAK 310

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ ++  SG   D      +++   + G+ ++ + +   M++    +D   ++I+I+  
Sbjct: 311 ELLTELEASGFAQDEMPYCILIDGLVKGGKIQEAKILFNEMKEKGVKSDGYAFSIMISAL 370

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            RGG  E+ + L +   ++    D+V   + L  Y         + + ++M +    PD 
Sbjct: 371 HRGGHHEESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESVMRMLKKMDELNISPDN 430

Query: 215 GTAKVLI 221
            T   LI
Sbjct: 431 ITFNTLI 437



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 72/184 (39%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           ++ A  +  +MK  G+   +  +  LL   +      + E    +M   G  P+ F  +S
Sbjct: 201 YTKAMELINDMKSRGLQMDIVIYGTLLAICASHNYCEEAEVYFQKMKDEGHCPNLFHYSS 260

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN Y     +EK E ++  +       +      L+ +Y +GG  EK + L   L A  
Sbjct: 261 LLNAYSENSDYEKAELLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKAKELLTELEASG 320

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              D + +   +    +    +    +F EM + G   DG    ++ISA       E+  
Sbjct: 321 FAQDEMPYCILIDGLVKGGKIQEAKILFNEMKEKGVKSDGYAFSIMISALHRGGHHEESK 380

Query: 235 TLVR 238
            L +
Sbjct: 381 QLAK 384



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 5/170 (2%)

Query: 73  TMKSHMLL----LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEK 127
           TMK H+ +    L    K G +     + ++M + GL PD F  +++L+   +L Q + K
Sbjct: 144 TMKVHVSVCNSVLGCLVKNGRLDSSFKLYDEMIREGLSPDPFTYSTLLSGCMKLKQGYTK 203

Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
             E++  M+      DI  Y  L+ I     + E+ E  FQ +  +   P++  ++S L 
Sbjct: 204 AMELINDMKSRGLQMDIVIYGTLLAICASHNYCEEAEVYFQKMKDEGHCPNLFHYSSLLN 263

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           AYS    Y +   + +++  +G  P+      L+   S     E+   L+
Sbjct: 264 AYSENSDYEKAELLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKAKELL 313



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 75/174 (43%), Gaps = 7/174 (4%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN  +   +  +Y     F  A  +  E++  G       + +L+    K G + + + 
Sbjct: 287 TPNKVILTTLLKVYSKGGLFEKAKELLTELEASGFAQDEMPYCILIDGLVKGGKIQEAKI 346

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + N+M + G+K D +  + M++   R G  E+ +++    E  + + D+   N  +  Y 
Sbjct: 347 LFNEMKEKGVKSDGYAFSIMISALHRGGHHEESKQLAKEFESENASYDLVMLNTSLRTYC 406

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
               +E +  + + +    + PD +T+ + +  +   K+Y    +  E+M   G
Sbjct: 407 STNDMESVMRMLKKMDELNISPDNITFNTLIRYFCNSKVYHLAYKTVEDMHTKG 460


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 88/181 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F +M    I P + +  +L+ A+ K G V + +  +  M K G+KPD    NS++
Sbjct: 263 DAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLM 322

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y  + +    + +L  M      A + +YNI+IN + +   +++   LF+ +  K++ 
Sbjct: 323 DGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIF 382

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V+T+ S +    +       LE+ + M D G  PD  T   ++ A      +++   L
Sbjct: 383 PNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIAL 442

Query: 237 V 237
           +
Sbjct: 443 L 443



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM    I P + ++  L+    K+G ++    +I+ MH  G +PD    +S+L+
Sbjct: 369 AMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILD 428

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +    +K   +L  ++      ++ TY ILI+   +GG +E    +F+ L  K    
Sbjct: 429 ALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNL 488

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V T+T  +  +    L+   L +  +M D  C PD  T +++I +   +D+ ++   L+
Sbjct: 489 TVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLL 548

Query: 238 RTM 240
           R M
Sbjct: 549 REM 551



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 85/186 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  ++ EM    I+  + ++  L++ +   G +    G+ N+M    + PD +  N +
Sbjct: 227 NDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNIL 286

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+ ++ +  L  M K     DI TYN L++ Y     +   + +  ++  + +
Sbjct: 287 VDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGV 346

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
              V ++   +  + + K+  + +++F+EM     +P+  T   LI       +I     
Sbjct: 347 TATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALE 406

Query: 236 LVRTMH 241
           L+  MH
Sbjct: 407 LIDLMH 412



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN-- 117
           ++F++M+  GI P   +  +L+  + + G +     V+ ++ K G +PDT  +N+ +   
Sbjct: 91  SLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGF 150

Query: 118 -LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            L G++ Q     + L A+    +  D  +Y  LIN   + G       L + +  K ++
Sbjct: 151 CLKGQIHQALNFHDKLVAL---GFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQ 207

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            DVV +++ + +  + K      +++ EM+      +  T   LIS 
Sbjct: 208 LDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISG 254



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/152 (17%), Positives = 63/152 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + M   G  P + ++  +L A  K   V K   ++ ++   G++P+ +    +++
Sbjct: 404 ALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILID 463

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ E    +   +    Y   ++TY ++I  +   G  ++   L   +      P
Sbjct: 464 GLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIP 523

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           D +T+   + +   K    +  ++  EMI  G
Sbjct: 524 DAITYEIIICSLFDKDENDKAEKLLREMITRG 555



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/192 (17%), Positives = 82/192 (42%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +++  LG      S+  L+    K G       ++ ++    ++ D  + +++++   + 
Sbjct: 164 DKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKD 223

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
                  ++ + M     +++I TY+ LI+ +   G ++   GLF  + ++ + PDV T+
Sbjct: 224 KNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTF 283

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
              + A+ ++   +        M+  G  PD  T   L+      +++    +++ TM  
Sbjct: 284 NILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSH 343

Query: 243 DMKTALPIYFNL 254
              TA    +N+
Sbjct: 344 RGVTATVRSYNI 355


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+ F +   I       +   AH +F EM   G TP + +  +++  ++K  N      
Sbjct: 451 SPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALK 510

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M  +G +PD    + ++ + G  G  E+ E V   M++ ++  D   Y +L++++G
Sbjct: 511 LYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWG 570

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +EK    +Q +    L+P+V T  S L+ + R         + + M+  G +P   
Sbjct: 571 KAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQ 630

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 631 TYTLLLSCCT 640



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 101/209 (48%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + + +EM + G  P   ++  L+ +Y +   + +   V  QM ++G +PD     +
Sbjct: 365 FGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCT 424

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +   ++   M+    + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 425 LIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQG 484

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +A +++ + Y   L+++ +M +AG  PD  T  +++        +E+  
Sbjct: 485 CTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAE 544

Query: 235 TLVRTMH-KDMKTALPIY---FNLYGEKG 259
            +   M  K+     P+Y    +L+G+ G
Sbjct: 545 GVFAEMQRKNWVPDEPVYGLLVDLWGKAG 573



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 88/187 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +++ M+  G++P   ++ +++    K G++     +  +M   G  P+    N
Sbjct: 434 FLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFN 493

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M+ L+ +   +E   ++   M+   +  D  TY+I++ + G  GF+E+ EG+F  +  K
Sbjct: 494 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK 553

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PD   +   +  + +     +  + ++EM+ AG  P+  T   L+S      ++ + 
Sbjct: 554 NWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEA 613

Query: 234 TTLVRTM 240
             L+++M
Sbjct: 614 YNLLQSM 620



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 59/121 (48%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+   GR  QF  +  +L  M K     +  TYN LI+ YGR  ++ 
Sbjct: 342 QPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLN 401

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F+ +     +PD VT+ + +  +++       +++++ M  AG  PD  T  V+I
Sbjct: 402 EAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVII 461

Query: 222 S 222
           +
Sbjct: 462 N 462


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 96/183 (52%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++  ++K  G++P++ ++ +L++ + K G+ +    V+ +M + G+KP       +++
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILID 416

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R    EK  ++ ++ME+     D+ TY++LI+ +   G + +   LF+S+  K+ +P
Sbjct: 417 TFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEP 476

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V + + +  Y ++    R L +F EM +    P+  + + +I     E + ++   LV
Sbjct: 477 NEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLV 536

Query: 238 RTM 240
             M
Sbjct: 537 EKM 539



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 88/184 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+EM+  G++  + ++  L+    +     +   V++QM   G+ P+    N+++
Sbjct: 286 DAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLI 345

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +  + +  K   +   ++    +  + TYNIL++ + + G       + + +  + +K
Sbjct: 346 DGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIK 405

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P  VT+T  +  ++R     + +++   M + G  PD  T  VLI     + ++ + + L
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRL 465

Query: 237 VRTM 240
            ++M
Sbjct: 466 FKSM 469



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 84/182 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++E+M+  G+ P + ++  ++    K G       V ++M + G+  +    N+++    
Sbjct: 255 MYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R  +  +  EV+  M+      ++ TYN LI+ +     + K   L + L ++ L P +V
Sbjct: 315 REMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLV 374

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   ++ + +K       ++ +EM + G  P   T  +LI   +  D +E+   L  +M
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSM 434

Query: 241 HK 242
            +
Sbjct: 435 EE 436



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 78/187 (41%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A+ V ++MK  GI P + ++  L+  +     + K   +   +   GL P     N +
Sbjct: 320 NEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNIL 379

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G      +V+  ME+        TY ILI+ + R   +EK   L  S+    L
Sbjct: 380 VSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGL 439

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T++  +  +  K        +F+ M++    P+      ++     E    +   
Sbjct: 440 TPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALR 499

Query: 236 LVRTMHK 242
           L R M +
Sbjct: 500 LFREMEE 506



 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/177 (18%), Positives = 78/177 (44%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           E++  G +P +  +  L+    K G + K + +  +M K GL  + +    +++   + G
Sbjct: 188 ELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG 247

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             ++  E+   M++     ++ TYN ++N   + G  +    +F  +  + +  ++VT+ 
Sbjct: 248 IKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYN 307

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + +    R+       E+ ++M   G  P+  T   LI       ++ +  +L R +
Sbjct: 308 TLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDL 364



 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/200 (18%), Positives = 88/200 (44%), Gaps = 2/200 (1%)

Query: 45  NLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103
           NL  F+  S  F+     F E K + +   + S  +++    + G + K   ++ ++ + 
Sbjct: 134 NLLTFVVGSSSFNQWWCFFNESK-IKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREF 192

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G  P+  +  ++++   + G+ EK +++   M K    A+  TY +LI+   + G  ++ 
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQG 252

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             +++ +    + P++ T+   +    +    +   ++F+EM + G   +  T   LI  
Sbjct: 253 FEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG 312

Query: 224 CSSEDQIEQVTTLVRTMHKD 243
              E +  +   ++  M  D
Sbjct: 313 LCREMKANEANEVMDQMKSD 332


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 1/186 (0%)

Query: 57  DAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +A    EEM  R G  P   +  +L+   SKTG+V     V++ M + G  PD +  NS+
Sbjct: 283 EALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSL 342

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +LG+ ++  +VL  M +   + +  TYN +I+   +   +E+   L   L  K +
Sbjct: 343 ISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGI 402

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+ S +      + +   +E+++EM   GC+PD  T  +LI +     ++++   
Sbjct: 403 LPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALN 462

Query: 236 LVRTMH 241
           L++ M 
Sbjct: 463 LLKEME 468



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 1/186 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F++M+  G++    ++  L+    K+  V +   +++QM   GL+PD F  NS+
Sbjct: 493 AEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSL 552

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  + + G  +K  +++  M       DI TY  LI    + G +E    L +++  K +
Sbjct: 553 LTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGI 612

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVT 234
                 +   + A  R+K  +  + +F EMI+    PD  T K++    C     I +  
Sbjct: 613 NLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAV 672

Query: 235 TLVRTM 240
             V  M
Sbjct: 673 DFVMEM 678



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 87/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EMK  G  P   ++ +L+ +    G + +   ++ +M  SG   +    N++++
Sbjct: 425 AMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLID 484

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  +  + EE+   ME    + +  TYN LI+   +   +E+   L   +  + L+P
Sbjct: 485 GFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRP 544

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+ S L  + +    ++  +I + M   GC PD  T   LI+      ++E  T L+
Sbjct: 545 DKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLL 604

Query: 238 RTMH 241
           RT+ 
Sbjct: 605 RTIQ 608



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 78/175 (44%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           GI P + ++  L+     + N      +  +M   G  PD F  N +++     G+ ++ 
Sbjct: 401 GILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEA 460

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             +L  ME    A ++ TYN LI+ + +   I + E +F  +  + +  + VT+ + +  
Sbjct: 461 LNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDG 520

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             + +      ++ ++MI  G  PD  T   L++       I++   +V+TM  D
Sbjct: 521 LCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASD 575



 Score = 44.3 bits (103), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 36/163 (22%)

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG--------------SYA--------- 141
            KP + +   +L+  G+ G+F+ M+++L  M+                SYA         
Sbjct: 85  FKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEIL 144

Query: 142 -------------ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
                        A+   YN L+N+   G  ++ +E    ++ ++ ++PDV T+   + A
Sbjct: 145 QFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKA 204

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             R    R  + + EEM D G  PD  T   ++     E  ++
Sbjct: 205 LCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLD 247



 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 1/187 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVIN 113
           F     + +EMK         S ++ + +Y+  G   +    ++ M  + G+  +T   N
Sbjct: 105 FDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYN 164

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +LN+     + + +E   + M       D+ST+NILI    R   I     L + +   
Sbjct: 165 FLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDF 224

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD  T+T+ +  +  +      + + E+M++AGC     T  VL++    E +IE+ 
Sbjct: 225 GLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEA 284

Query: 234 TTLVRTM 240
              +  M
Sbjct: 285 LRFIEEM 291


>gi|224058965|ref|XP_002299667.1| predicted protein [Populus trichocarpa]
 gi|222846925|gb|EEE84472.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 80/148 (54%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A + F +MK  G +P +  +  LL AYS  GN  K E ++  M  SGL P+  ++ ++L
Sbjct: 162 EAQSYFNQMKDEGHSPNIFHYSSLLNAYSSDGNYKKAEELVQDMKSSGLVPNKVILTTLL 221

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +Y R G FEK  ++L  ++   +A +   Y +L++   + G +++   +F  +  KR+K
Sbjct: 222 KVYVRGGLFEKSRDLLVELDTLGFAKNEMPYCLLMDGLAKNGLLDEARSVFNEMKEKRVK 281

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
               +++  ++++ R  L+    E+ EE
Sbjct: 282 SGGYSYSIMISSFCRGGLFEEAKELAEE 309



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 1/156 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN-VAKCEGVINQMHKSGLKPDTFVIN 113
           F  +   F +MK  G+TP   ++  LL    K  +  +K   ++ +++ +GL+ D+ +  
Sbjct: 89  FDSSMKFFHKMKNNGLTPDAITYSTLLAGCMKIKDGYSKALDLVQELNYNGLQMDSIMYG 148

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L +     + E+ +     M+   ++ +I  Y+ L+N Y   G  +K E L Q + + 
Sbjct: 149 TLLAVCASNNRCEEAQSYFNQMKDEGHSPNIFHYSSLLNAYSSDGNYKKAEELVQDMKSS 208

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            L P+ V  T+ L  Y R  L+ +  ++  E+   G
Sbjct: 209 GLVPNKVILTTLLKVYVRGGLFEKSRDLLVELDTLG 244



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 69/169 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A  + +E+   G+      +  LL   +      + +   NQM   G  P+ F  +S
Sbjct: 125 YSKALDLVQELNYNGLQMDSIMYGTLLAVCASNNRCEEAQSYFNQMKDEGHSPNIFHYSS 184

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN Y   G ++K EE++  M+      +      L+ +Y RGG  EK   L   L    
Sbjct: 185 LLNAYSSDGNYKKAEELVQDMKSSGLVPNKVILTTLLKVYVRGGLFEKSRDLLVELDTLG 244

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              + + +   +   ++  L      +F EM +      G +  ++IS+
Sbjct: 245 FAKNEMPYCLLMDGLAKNGLLDEARSVFNEMKEKRVKSGGYSYSIMISS 293



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 73/170 (42%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           T  L V++    F  +  +  E+  LG       + LL+   +K G + +   V N+M +
Sbjct: 218 TTLLKVYVRGGLFEKSRDLLVELDTLGFAKNEMPYCLLMDGLAKNGLLDEARSVFNEMKE 277

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
             +K   +  + M++ + R G FE+ +E+    E      D+   N ++  Y R G  E 
Sbjct: 278 KRVKSGGYSYSIMISSFCRGGLFEEAKELAEEFEAKYDKYDVVILNTILCAYCRTGEKES 337

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +    + +    + PD  T+   +  + ++KLY    +  E+M   G  P
Sbjct: 338 VMRTMRKMDELAISPDYNTFHILIKYFCKEKLYMLAYQTMEDMHRKGHQP 387



 Score = 37.7 bits (86), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 3/154 (1%)

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
           N AK   + + +     K + F+ NS+L    R  +F+   +    M+      D  TY+
Sbjct: 53  NPAKALEIYHSIPDESTKTNVFICNSLLRCLVRNTKFDSSMKFFHKMKNNGLTPDAITYS 112

Query: 149 ILIN--IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
            L+   +  + G+ + ++ L Q L    L+ D + + + LA  +           F +M 
Sbjct: 113 TLLAGCMKIKDGYSKALD-LVQELNYNGLQMDSIMYGTLLAVCASNNRCEEAQSYFNQMK 171

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           D G  P+      L++A SS+   ++   LV+ M
Sbjct: 172 DEGHSPNIFHYSSLLNAYSSDGNYKKAEELVQDM 205


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 2/179 (1%)

Query: 61  VFEEMK--RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           +F  MK  R    P + +   ++  YS  G +  C+   N M   GLKP+    N+++  
Sbjct: 324 IFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGA 383

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           Y   G  ++   V   ++K  +  D+ +Y  L+N YG+ G  EK   +F+ +     KP+
Sbjct: 384 YASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPN 443

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V++ + + AY  K L    +EI  EM   G  P+  +   L++AC    Q  ++ +++
Sbjct: 444 LVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVL 502



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 3/211 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VF E+K+ G  P + S+  LL AY K+G   K   V   M ++  KP+    N+++
Sbjct: 392 EAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALI 451

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YG  G   +  E+L  ME+     +I +   L+   GR G   K++ +  +   + +K
Sbjct: 452 DAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIK 511

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +   + S + +Y     Y + L ++  M      PD  T  VLIS C    +  +    
Sbjct: 512 LNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGF 571

Query: 237 VRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
           +  M   M   +P+   +Y     A S  GQ
Sbjct: 572 LDEM---MDLKIPLSKEVYSSVICAYSKQGQ 599



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  +     +S   + FE MK   I P   +  +++    K G   K   + N
Sbjct: 267 LVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFN 326

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   +S   PD     ++++LY   GQ E  +     M       +I +YN LI  Y  
Sbjct: 327 SMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYAS 386

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  ++   +F  +      PDVV++TS L AY +     + +++FE M    C P+  +
Sbjct: 387 HGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVS 446

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S+  + +   ++  M ++
Sbjct: 447 YNALIDAYGSKGLLTEAVEILHEMERN 473



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM++    P  +++  L+ A+ + G       +++ M ++ + P     N+++N
Sbjct: 181 ARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLIN 240

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G  G +++   V   M +     D+ T+NI+++ Y RG    K+   F+ +    ++P
Sbjct: 241 ACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRP 300

Query: 178 DVVTWTSRLAAYSRKKLYR--RCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIEQV 233
           D  T T  +  Y   KL +  + ++IF  M +  + CYPD  T   +I   S   QIE  
Sbjct: 301 D--TTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENC 358

Query: 234 TTLVRTM 240
            T   TM
Sbjct: 359 QTAFNTM 365



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 14/196 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +  EM+R G+ P + S   LL A  + G   K + V++     G+K +T   NS
Sbjct: 460 LTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNS 519

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI------NIYGRG-GFIEKMEGLF 167
            +  Y  +G+++K   +  AM       D  TYN+LI      + YG   GF+++M  L 
Sbjct: 520 AIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLK 579

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             L  +        ++S + AYS++        +F +M   GC PD  T   +I A    
Sbjct: 580 IPLSKE-------VYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVA 632

Query: 228 DQIEQVTTLVRTMHKD 243
           +  E+ + L   M  D
Sbjct: 633 ENWEKASALFLEMETD 648



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   V +  G+  +M K   KPD    N+++N +GR GQ+     ++  M + 
Sbjct: 167 MMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRA 226

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     STYN LIN  G  G  ++   + + +    + PD+VT    L+AY R   Y + 
Sbjct: 227 AIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKV 286

Query: 199 LEIFEEMIDAGCYPDGGTAKVLI 221
           L  FE M      PD  T  ++I
Sbjct: 287 LSYFELMKGTNIRPDTTTLNIVI 309



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 84/187 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A +++  M+   + P   ++ +L++   K     +  G +++M    +     V +S
Sbjct: 530 YDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSS 589

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + GQ  + E + T M+      D+ TY  +I+ Y      EK   LF  +    
Sbjct: 590 VICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDD 649

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PD +  +S + A+++     + L + E M +     +  +   ++SACS   +  ++ 
Sbjct: 650 VQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREII 709

Query: 235 TLVRTMH 241
            L++ M 
Sbjct: 710 GLIKLME 716



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 94/218 (43%), Gaps = 6/218 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A    +EM  L I  + + +  ++ AYSK G V + E +  +M   G +PD     +
Sbjct: 565 YGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTA 624

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ Y     +EK   +   ME      D    + L+  + +GG   K+  L + +  K+
Sbjct: 625 MIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKK 684

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +  +  ++   ++A S  + +R  + + + M  +      G    L+       +IE   
Sbjct: 685 IPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIE--- 741

Query: 235 TLVRTMHKDMKTALPIYFNLYG---EKGVARSNLGQYI 269
           T+++  +K + +   I F  Y    +  +A  N  +YI
Sbjct: 742 TMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYI 779



 Score = 44.7 bits (104), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 81/184 (44%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +T  +  +  +  +  A A+F EM+   + P   +   L+ A++K G  AK   +  
Sbjct: 619 VITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAE 678

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M +  +  +      M++    L ++ ++  ++  ME       I   N L++  G+ G
Sbjct: 679 FMREKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSG 738

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            IE M  LF  + A   + +  T++  L        +R+ +E+ + M +AG  P  G  +
Sbjct: 739 KIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYR 798

Query: 219 VLIS 222
            + S
Sbjct: 799 SISS 802


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 2/193 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM   G  P + +   L+  Y   GNV     + + + + G K D +  N  +
Sbjct: 273 EAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFI 332

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y ++G+      V   M +     +I TYN LI+   + G +     + +++    L 
Sbjct: 333 HGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLT 392

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+VT    L    + K   + + +F +++++G  PD  +  +LI  C +  ++ +   L
Sbjct: 393 PDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNL 452

Query: 237 VRTMHKDMKTALP 249
           +R MH  +K  +P
Sbjct: 453 LRDMH--LKNLVP 463



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 37/228 (16%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+EM R G+ P + ++  L+    K G V+    ++  MH+SGL PD      +L
Sbjct: 343 DAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILL 402

Query: 117 N---LYGRLGQ----FEKMEE----------------------------VLTAMEKGSYA 141
           +      RL Q    F ++ E                            +L  M   +  
Sbjct: 403 DGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLV 462

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
             I TY+ LI+   R G I     L   +  K   PD +T++  L A  +K+     + +
Sbjct: 463 PHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFL 522

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           F +MI  G  PD     ++I      ++I++   L R MH  MK  +P
Sbjct: 523 FNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMH--MKNLVP 568



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 81/182 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +   + +EM R G+  ++    +L+    K G + +   + ++M   G +P+     +
Sbjct: 236 FLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTA 295

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y   G  +   E+  A+ +  +  D+ TYN+ I+ Y + G +     +F  +  + 
Sbjct: 296 LMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREG 355

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P++VT+ S +    +        EI + M  +G  PD  T  +L+       +++Q  
Sbjct: 356 VVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAI 415

Query: 235 TL 236
            L
Sbjct: 416 LL 417



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 78/189 (41%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +    + EM   G+ P   ++  L+      G   +  G++++M + GL    +V  
Sbjct: 200 FVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFT 259

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++   + G   +  E+   M    Y  +I T   L+  Y   G ++    LF ++   
Sbjct: 260 VLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEW 319

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             K DV T+   +  Y +    R  + +F+EM   G  P+  T   LI       ++   
Sbjct: 320 GFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGA 379

Query: 234 TTLVRTMHK 242
             +V+TMH+
Sbjct: 380 WEIVKTMHR 388



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 2/192 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+ +   G    + ++ + +  Y K G V     V ++M + G+ P+    NS+++
Sbjct: 309 ARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLID 368

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+     E++  M +     DI T  IL++   +   +++   LF  L    L P
Sbjct: 369 CLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTP 428

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++T  +      +     + +  +M      P   T   LI       +I     L+
Sbjct: 429 DVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLL 488

Query: 238 RTMHKDMKTALP 249
             MH  +K  LP
Sbjct: 489 NEMH--VKGPLP 498



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 74/169 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A  +F ++   G+TP + S+ +L+     +  + +   ++  MH   L P     + 
Sbjct: 411 LDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSC 470

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R G+      +L  M       D  TY+IL++   +   +++   LF  +  + 
Sbjct: 471 LIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRG 530

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L+PDV+ +T  +  Y + +     + +F EM      PD  T  +L +A
Sbjct: 531 LEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNA 579



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP+++ +   I+         +A  +  +M    + P + ++  L+    ++G ++    
Sbjct: 427 TPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWR 486

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++N+MH  G  PDT   + +L+   +    ++   +   M K     D+  Y I+I+ Y 
Sbjct: 487 LLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYC 546

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           +   I++   LF+ +  K L PD+VT+T
Sbjct: 547 KSERIDEAINLFREMHMKNLVPDIVTYT 574



 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +  EM   G  P   ++ +LL A  K  ++ +   + NQM K GL+PD      M
Sbjct: 482 SNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIM 541

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           ++ Y +  + ++   +   M   +   DI TY IL N   + G
Sbjct: 542 IDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSG 584


>gi|302786806|ref|XP_002975174.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
 gi|300157333|gb|EFJ23959.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
          Length = 555

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 1/179 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM   G+ P+  +  +L+  Y+K G + K   V + + +   K D  V N++L 
Sbjct: 188 AKGMFDEMASYGLEPSEITLSILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNTLLK 247

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G  ++ E ++  ME+     D  TY IL+N+Y   G + ++  +F  L    + P
Sbjct: 248 SCVESGNIQRAESLIAEMEREKQWPDHMTYGILMNVYATKGMVAEVRAMFDKLKNLAVFP 307

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
               +T  + A  +   + R   IF+EMI  GC  +   + +L+S C+S  QI   T L
Sbjct: 308 KAAFYTMLIKASKQAGDFDRIPGIFDEMIANGCSVNERMSGMLVS-CASSSQISDETRL 365



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 100/225 (44%), Gaps = 13/225 (5%)

Query: 49  FIFSIYFS---------DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + FSI+ S         DA A F  ++  G++    ++  ++  Y K G  A+   +   
Sbjct: 65  YTFSIFVSCSKRCDQAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQT 124

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M K+  KPD      + N+Y R+G ++ +  +   ME+     ++  +N LI   GR G 
Sbjct: 125 MRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGK 184

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +   +G+F  + +  L+P  +T +  +  Y++     + L++++ +       D      
Sbjct: 185 VTLAKGMFDEMASYGLEPSEITLSILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNT 244

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMK----TALPIYFNLYGEKGV 260
           L+ +C     I++  +L+  M ++ +        I  N+Y  KG+
Sbjct: 245 LLKSCVESGNIQRAESLIAEMEREKQWPDHMTYGILMNVYATKGM 289



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 90/183 (49%), Gaps = 4/183 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +++ M++    P + S  ++   YS+ G+      +   M ++ +KP+  + N++
Sbjct: 116 AEAMDLYQTMRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTL 175

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADIS--TYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +   GR G+    + +   M   SY  + S  T +ILI++Y + G ++K   ++ ++  K
Sbjct: 176 IGTLGRAGKVTLAKGMFDEM--ASYGLEPSEITLSILIDMYTKVGALDKALDVYDTIKQK 233

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           + K DV+ + + L +       +R   +  EM     +PD  T  +L++  +++  + +V
Sbjct: 234 KWKLDVLVYNTLLKSCVESGNIQRAESLIAEMEREKQWPDHMTYGILMNVYATKGMVAEV 293

Query: 234 TTL 236
             +
Sbjct: 294 RAM 296


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 92/169 (54%), Gaps = 5/169 (2%)

Query: 58  AHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +FE M + LGI P   S + +L A +  G  ++ + V     +SGL  D FV N+++
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVV 273

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++Y + G  E+  +V   M+      D+ ++N ++  Y + G  +   GLF+ +  ++++
Sbjct: 274 DMYAKCGMMEEANKVFERMK----VKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 329

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            +VVTW++ +A Y+++ L    L++F +M   G  P+  T   L+S C+
Sbjct: 330 LNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCA 378



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY-AADISTYNILINIYGRGGFIEKMEG 165
           P+ F I+  L    RLG      ++   + +  + +A +   N LI++Y + G ++    
Sbjct: 477 PNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARV 536

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +F ++  +    + V+WTS +  Y         L+IF EM   G  PDG T  V++ ACS
Sbjct: 537 VFDNMHQR----NGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACS 592

Query: 226 SEDQIEQVTTLVRTMHKD 243
               ++Q       M+KD
Sbjct: 593 HSGMVDQGINYFNGMNKD 610



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 9/195 (4%)

Query: 38  LLLQHTPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           LL+Q  P+    I S+Y  F+        ++RL   P+  +         ++ ++   E 
Sbjct: 52  LLVQGLPHDPTHIISMYLTFNSPAKALSVLRRL--HPSSHTVFWWNQLIRRSVHLGFLED 109

Query: 96  VIN---QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           V+    +M + G +PD +    +L   G +  F     V   +    +  ++   N L++
Sbjct: 110 VLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVS 169

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCY 211
           +YGR G  E    +F  +  +R   D+V+W S +AAY +     R +++FE M  D G  
Sbjct: 170 MYGRCGAWENARQVFDEM-RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIR 228

Query: 212 PDGGTAKVLISACSS 226
           PD  +   ++ AC+S
Sbjct: 229 PDAVSLVNVLPACAS 243



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F DA  +FE+++   I   + +   ++  Y++ G   +   V  QM   G +P+   + S
Sbjct: 313 FDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVS 372

Query: 115 MLN--------LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           +L+        L+G+      ++ +L  +++     D+   N LI++Y +    +    +
Sbjct: 373 LLSGCALAGTLLHGKETHCHAIKWILN-LDENDPGDDLMVINALIDMYSKCKSPKAARAM 431

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI--DAGCYPDGGTAKVLISAC 224
           F  +P K     VVTWT  +   ++       LE+F +M+  D    P+  T    + AC
Sbjct: 432 FDLIPPK--DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMAC 489

Query: 225 S 225
           +
Sbjct: 490 A 490


>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 636

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMK--------RLGITPTMKSHMLLLTAY 84
           +L N   L  +PN   +   I       +FEEM+        +    P + +    L A+
Sbjct: 248 LLSNMESLGISPNTITYNTLIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAF 307

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
             +G +   E    +   +G++P     N +L+ YG+ G ++KM  V+  M+K  Y+  I
Sbjct: 308 GISGQIETMEKCYEKFQGAGIEPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKYHYSWTI 367

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            TYNI+I+ +GR G +++ME LF+ + ++R+KP  VT  S + AY +
Sbjct: 368 ITYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGQ 414



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 5/210 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
           F  A  +   M+ LGI+P   ++  L+ AY K     + E  + +M  +   +PD + +N
Sbjct: 242 FDKAKTLLSNMESLGISPNTITYNTLIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMN 301

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S L  +G  GQ E ME+     +       I T+N+L++ YG+ G  +KM  + + +   
Sbjct: 302 STLRAFGISGQIETMEKCYEKFQGAGIEPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKY 361

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
                ++T+   + A+ R    ++   +F  M      P   T   L+ A    ++ E++
Sbjct: 362 HYSWTIITYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGQAEKPEKI 421

Query: 234 TTLVRTMHKDMKTALPIYFN----LYGEKG 259
             ++R +     T   ++FN     YG  G
Sbjct: 422 EGVLRFIENSDITLDTVFFNCLVDAYGRMG 451



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 76/142 (53%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AV E M++   + T+ ++ +++ A+ + G++ + E +   M    +KP    + S++  Y
Sbjct: 353 AVMEYMQKYHYSWTIITYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 412

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           G+  + EK+E VL  +E      D   +N L++ YGR G   +M+G+   +  K  +PD 
Sbjct: 413 GQAEKPEKIEGVLRFIENSDITLDTVFFNCLVDAYGRMGCFAEMKGVLILMEQKGYRPDK 472

Query: 180 VTWTSRLAAYSRKKLYRRCLEI 201
           +T+ + + AYS K + +   E+
Sbjct: 473 ITYRTMIKAYSSKGMTKHVKEL 494



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 2/199 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSML 116
           AH +F+ M   G   + +S+  LL+AY ++G + K   ++ +M ++   +PD    + ++
Sbjct: 174 AHELFQAMIHEGCDVSHESYTALLSAYGRSGLLDKAFSLLEEMKRNPDCQPDVHTYSILI 233

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKRL 175
               ++  F+K + +L+ ME    + +  TYN LI+ YG+    E+ME  L + L  +  
Sbjct: 234 KSCVQVFAFDKAKTLLSNMESLGISPNTITYNTLIDAYGKAKMFEEMEATLVKMLSQQNC 293

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDV T  S L A+          + +E+   AG  P   T  VL+ +       ++++ 
Sbjct: 294 EPDVWTMNSTLRAFGISGQIETMEKCYEKFQGAGIEPSIMTFNVLLDSYGKAGDYKKMSA 353

Query: 236 LVRTMHKDMKTALPIYFNL 254
           ++  M K   +   I +N+
Sbjct: 354 VMEYMQKYHYSWTIITYNI 372



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 2/188 (1%)

Query: 58  AHAVFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A ++ EEMKR     P + ++ +L+ +  +     K + +++ M   G+ P+T   N+++
Sbjct: 209 AFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTITYNTLI 268

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + YG+   FE+ME  L  M  + +   D+ T N  +  +G  G IE ME  ++      +
Sbjct: 269 DAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCYEKFQGAGI 328

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P ++T+   L +Y +   Y++   + E M          T  ++I A      ++Q+  
Sbjct: 329 EPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKYHYSWTIITYNIVIDAFGRAGDLKQMEY 388

Query: 236 LVRTMHKD 243
           L R M  +
Sbjct: 389 LFRLMRSE 396



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +E+ +  GI P++ +  +LL +Y K G+  K   V+  M K          N +++ +GR
Sbjct: 320 YEKFQGAGIEPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKYHYSWTIITYNIVIDAFGR 379

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++ME +   M          T   L+  YG+    EK+EG+ + +    +  D V 
Sbjct: 380 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGQAEKPEKIEGVLRFIENSDITLDTVF 439

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +   + AY R   +     +   M   G  PD  T + +I A SS+   + V  L
Sbjct: 440 FNCLVDAYGRMGCFAEMKGVLILMEQKGYRPDKITYRTMIKAYSSKGMTKHVKEL 494



 Score = 37.7 bits (86), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 2/130 (1%)

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK- 173
           ++ + G+  Q EK  E+  AM          +Y  L++ YGR G ++K   L + +    
Sbjct: 161 LIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAYGRSGLLDKAFSLLEEMKRNP 220

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PDV T++  + +  +   + +   +   M   G  P+  T   LI A       E++
Sbjct: 221 DCQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTITYNTLIDAYGKAKMFEEM 280

Query: 234 -TTLVRTMHK 242
             TLV+ + +
Sbjct: 281 EATLVKMLSQ 290


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 2/179 (1%)

Query: 61  VFEEMK--RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           +F  MK  R    P + +   ++  YS  G +  C+   N M   GLKP+    N+++  
Sbjct: 324 IFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGA 383

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           Y   G  ++   V   ++K  +  D+ +Y  L+N YG+ G  EK   +F+ +     KP+
Sbjct: 384 YASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPN 443

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V++ + + AY  K L    +EI  EM   G  P+  +   L++AC    Q  ++ +++
Sbjct: 444 LVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVL 502



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 3/211 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VF E+K+ G  P + S+  LL AY K+G   K   V   M ++  KP+    N+++
Sbjct: 392 EAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALI 451

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YG  G   +  E+L  ME+     +I +   L+   GR G   K++ +  +   + +K
Sbjct: 452 DAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIK 511

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +   + S + +Y     Y + L ++  M      PD  T  VLIS C    +  +    
Sbjct: 512 LNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGF 571

Query: 237 VRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
           +  M   M   +P+   +Y     A S  GQ
Sbjct: 572 LDEM---MDLKIPLSKEVYSSVICAYSKQGQ 599



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  +     +S   + FE MK   I P   +  +++    K G   K   + N
Sbjct: 267 LVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFN 326

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   +S   PD     ++++LY   GQ E  +     M       +I +YN LI  Y  
Sbjct: 327 SMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYAS 386

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  ++   +F  +      PDVV++TS L AY +     + +++FE M    C P+  +
Sbjct: 387 HGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVS 446

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S+  + +   ++  M ++
Sbjct: 447 YNALIDAYGSKGLLTEAVEILHEMERN 473



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM++    P  +++  L+ A+ + G       +++ M ++ + P     N+++N
Sbjct: 181 ARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLIN 240

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G  G +++   V   M +     D+ T+NI+++ Y RG    K+   F+ +    ++P
Sbjct: 241 ACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRP 300

Query: 178 DVVTWTSRLAAYSRKKLYR--RCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIEQV 233
           D  T T  +  Y   KL +  + ++IF  M +  + CYPD  T   +I   S   QIE  
Sbjct: 301 D--TTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENC 358

Query: 234 TTLVRTM 240
            T   TM
Sbjct: 359 QTAFNTM 365



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 14/196 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +  EM+R G+ P + S   LL A  + G   K + V++     G+K +T   NS
Sbjct: 460 LTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNS 519

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI------NIYGRG-GFIEKMEGLF 167
            +  Y  +G+++K   +  AM       D  TYN+LI      + YG   GF+++M  L 
Sbjct: 520 AIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLK 579

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             L  +        ++S + AYS++        +F +M   GC PD  T   +I A    
Sbjct: 580 IPLSKE-------VYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVA 632

Query: 228 DQIEQVTTLVRTMHKD 243
           +  E+ + L   M  D
Sbjct: 633 ENWEKASALFLEMETD 648



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   V +  G+  +M K   KPD    N+++N +GR GQ+     ++  M + 
Sbjct: 167 MMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRA 226

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     STYN LIN  G  G  ++   + + +    + PD+VT    L+AY R   Y + 
Sbjct: 227 AIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKV 286

Query: 199 LEIFEEMIDAGCYPDGGTAKVLI 221
           L  FE M      PD  T  ++I
Sbjct: 287 LSYFELMKGTNIRPDTTTLNIVI 309



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 84/187 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A +++  M+   + P   ++ +L++   K     +  G +++M    +     V +S
Sbjct: 530 YDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSS 589

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + GQ  + E + T M+      D+ TY  +I+ Y      EK   LF  +    
Sbjct: 590 VICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDD 649

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PD +  +S + A+++     + L + E M +     +  +   ++SACS   +  ++ 
Sbjct: 650 VQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREII 709

Query: 235 TLVRTMH 241
            L++ M 
Sbjct: 710 GLIKLME 716



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 94/218 (43%), Gaps = 6/218 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A    +EM  L I  + + +  ++ AYSK G V + E +  +M   G +PD     +
Sbjct: 565 YGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTA 624

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ Y     +EK   +   ME      D    + L+  + +GG   K+  L + +  K+
Sbjct: 625 MIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKK 684

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +  +  ++   ++A S  + +R  + + + M  +      G    L+       +IE   
Sbjct: 685 IPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIE--- 741

Query: 235 TLVRTMHKDMKTALPIYFNLYG---EKGVARSNLGQYI 269
           T+++  +K + +   I F  Y    +  +A  N  +YI
Sbjct: 742 TMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYI 779



 Score = 44.7 bits (104), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 81/184 (44%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +T  +  +  +  +  A A+F EM+   + P   +   L+ A++K G  AK   +  
Sbjct: 619 VITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAE 678

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M +  +  +      M++    L ++ ++  ++  ME       I   N L++  G+ G
Sbjct: 679 FMREKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSG 738

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            IE M  LF  + A   + +  T++  L        +R+ +E+ + M +AG  P  G  +
Sbjct: 739 KIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYR 798

Query: 219 VLIS 222
            + S
Sbjct: 799 SISS 802


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 92/202 (45%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ H   L  F  +     A  +F++M + GITP + ++ +L+ AY K  N+     +  
Sbjct: 306 IITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYR 365

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M   G+ PD    N ++    R G  E    +++ M+     AD+ TYNILI+     G
Sbjct: 366 IMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKG 425

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            ++K   L   +  K LKP  +T+ + +  Y ++   R  L +  +M   G   +  T  
Sbjct: 426 EMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYN 485

Query: 219 VLISACSSEDQIEQVTTLVRTM 240
           VLI     +D++E    L+  M
Sbjct: 486 VLIKGFCKKDKLEDANGLLNEM 507



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 90/197 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+ +EM+  GI P   +  +L+  + K  NV+    V  +M++ G+KP+    NS++N
Sbjct: 220 ADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLIN 279

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+  +   +   M       +I T+N L+N + +   +++   LF  +P + + P
Sbjct: 280 GLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITP 339

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V T+   + AY + +       ++  M+  G  PD  T   LI+    +  +E    LV
Sbjct: 340 NVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLV 399

Query: 238 RTMHKDMKTALPIYFNL 254
             M      A  I +N+
Sbjct: 400 SEMDTKHLKADLITYNI 416



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 88/189 (46%), Gaps = 3/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK---CEGVINQMHKSGLKPDTFV 111
            + A  + E+MK  G++  + ++  L+  Y K G + K    + ++ +M   G+ P+   
Sbjct: 179 LNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVT 238

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N +++ + +        +V   M +     ++ TYN LIN     G + +   L   + 
Sbjct: 239 FNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMV 298

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              LKP+++T  + L  + + K+ ++  E+F++M   G  P+  T  +LI A   ++ +E
Sbjct: 299 NSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENME 358

Query: 232 QVTTLVRTM 240
               L R M
Sbjct: 359 DAFALYRIM 367



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 87/185 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  VF EM R G+ P + ++  L+      G V +   + +QM  S LKP+    N++
Sbjct: 253 SAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNAL 312

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LN + +    ++  E+   M K     +++TYNILI+ Y +   +E    L++ +  K +
Sbjct: 313 LNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGV 372

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+   +A   RK        +  EM       D  T  +LI +  ++ ++++   
Sbjct: 373 CPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALR 432

Query: 236 LVRTM 240
           L+  M
Sbjct: 433 LLDEM 437



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 83/199 (41%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A A+ ++M    + P + +H  LL  + K   V +   + + M K G+ P+    N +
Sbjct: 288 NEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNIL 347

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y +    E    +   M       D+STYN LI    R G +E    L   +  K L
Sbjct: 348 IDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHL 407

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           K D++T+   + +   K   ++ L + +EM   G  P   T   +I     E  +     
Sbjct: 408 KADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALN 467

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L   M K  + A    +N+
Sbjct: 468 LRSQMEKVGRLANVATYNV 486



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 18/168 (10%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM    +   + ++ +L+ +    G + K   ++++M + GLKP     N+M++
Sbjct: 395 ARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMID 454

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G       + + MEK    A+++TYN+LI  + +   +E   GL   +  K L P
Sbjct: 455 GYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIP 514

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD--GGTAKVLISA 223
           + +T+                  + EEM++ G  PD  G   KV +S+
Sbjct: 515 NRMTYEI----------------VTEEMMEKGFVPDIEGHLYKVAVSS 546



 Score = 37.0 bits (84), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 5/143 (3%)

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           GLK      N +++   ++G+   ME V   M +      + ++NI+IN   + G + K 
Sbjct: 123 GLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKA 182

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSR----KKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             + + +  + +  +V+T+ + +  Y +     K+Y +   I +EM   G  P+  T  +
Sbjct: 183 GDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMY-KADAILKEMRADGICPNEVTFNI 241

Query: 220 LISACSSEDQIEQVTTLVRTMHK 242
           LI     +  +     +   M++
Sbjct: 242 LIDGFCKDKNVSAAMKVFAEMNR 264


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 92/186 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  +K +G+ P   ++ +++  YSK G + +   ++++M ++G +PD  V+NS++
Sbjct: 486 EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLI 545

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   +  + ++  ++   M++      + TYN L+   G+ G I++   LF+ +  K   
Sbjct: 546 NTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCP 605

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ +T+ +      +       L++  +M+D GC PD  T   +I       Q+++    
Sbjct: 606 PNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCF 665

Query: 237 VRTMHK 242
              M K
Sbjct: 666 FHQMKK 671



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   FE+MK  GI P + +    L + +K G   + + +   +   GL PD+   N M+ 
Sbjct: 452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 511

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++G+ ++  ++L+ M +     D+   N LIN   +   +++   +F  +   +LKP
Sbjct: 512 CYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            VVT+ + LA   +    +  +E+FE M+  GC P+  T   L       D++
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEV 624



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 96/203 (47%), Gaps = 3/203 (1%)

Query: 37  FLLLQHTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           F+L  ++ N  + +   S + ++A  V+  M   G  P+++++  L+    K  ++    
Sbjct: 184 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVM 243

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           G++ +M   GLKP+ +     + + GR G+  +  E+L  M+      D+ TY +LI+  
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
                ++  + +F+ +   R KPD VT+ + L  +S  +      + + EM   G  PD 
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDV 363

Query: 215 GTAKVLISA-CSSEDQIEQVTTL 236
            T  +L+ A C + +  E   TL
Sbjct: 364 VTFTILVDALCKAGNFGEAFDTL 386



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 7/198 (3%)

Query: 56  SDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           S A  +FE+  K LG+ P + ++ LL+    +   +   + V  Q+  +G  PD    N 
Sbjct: 766 SGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNF 825

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ YG+ G+ +++ E+   M      A+  T+NI+I+   + G ++    L+  L + R
Sbjct: 826 LLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDR 885

Query: 175 -LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P   T+   +   S+        ++FE M+D GC P+     +LI+      + +  
Sbjct: 886 DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAA 945

Query: 234 TTLVRTMHK-----DMKT 246
             L + M K     D+KT
Sbjct: 946 CALFKRMVKEGVRPDLKT 963



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 7/167 (4%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A A+F+ M + G+ P +K++ +L+      G V +      ++ +SGL PD    N ++N
Sbjct: 945  ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIIN 1004

Query: 118  LYGRLGQFEKMEEVLTAMEK----GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
                LG+  ++EE L    +         D+ TYN LI   G  G +E+   ++  +   
Sbjct: 1005 ---GLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061

Query: 174  RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
             L+P+V T+ + +  YS          +++ M+  G  P+ GT + L
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 93/210 (44%), Gaps = 7/210 (3%)

Query: 41  QHTPNLFVFIFSI-YFSDAHAV------FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           +H P+   +I  +  FSD   +      + EM++ G  P + +  +L+ A  K GN  + 
Sbjct: 323 RHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEA 382

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
              ++ M   G+ P+    N+++    R+ + +   E+   ME         TY + I+ 
Sbjct: 383 FDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDY 442

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+ G        F+ +  K + P++V   + L + ++    R   +IF  + D G  PD
Sbjct: 443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             T  +++   S   +I++   L+  M ++
Sbjct: 503 SVTYNMMMKCYSKVGEIDEAIKLLSEMMEN 532



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 8/211 (3%)

Query: 42  HTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P++  F   +        F +A    + M+  GI P + ++  L+    +   +    
Sbjct: 359 HVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDAL 418

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            +   M   G+KP  +     ++ YG+ G      E    M+    A +I   N  +   
Sbjct: 419 ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSL 478

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G   + + +F  L    L PD VT+   +  YS+       +++  EM++ GC PD 
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
                LI+     D++++   +   M K+MK
Sbjct: 539 IVVNSLINTLYKADRVDEAWKMFMRM-KEMK 568



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 1/185 (0%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +A  +FE M   G  P    + +L+  + K G       +  +M K G++PD    + ++
Sbjct: 909  EAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLV 968

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-L 175
            +    +G+ ++       +++     D+  YN++IN  G+   +E+   LF  +   R +
Sbjct: 969  DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGI 1028

Query: 176  KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             PD+ T+ S +       +     +I+ E+  AG  P+  T   LI   S   + E    
Sbjct: 1029 TPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYA 1088

Query: 236  LVRTM 240
            + +TM
Sbjct: 1089 VYQTM 1093



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/213 (18%), Positives = 87/213 (40%), Gaps = 4/213 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            + +EM+ LG+ P + +  + +    + G + +   ++ +M   G  PD      +++  
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               + +  +EV   M+ G +  D  TY  L++ +     ++ ++  +  +      PDV
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDV 363

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+T  + A  +   +    +  + M D G  P+  T   LI       +++    L   
Sbjct: 364 VTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGN 423

Query: 240 MH----KDMKTALPIYFNLYGEKGVARSNLGQY 268
           M     K       ++ + YG+ G + S L  +
Sbjct: 424 MESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 456



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 62   FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            ++ M     +PT  ++  L+   SK+G + + + +   M   G +P+  + N ++N +G+
Sbjct: 879  YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGK 938

Query: 122  LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
             G+ +    +   M K     D+ TY++L++     G +++    F+ L    L PDVV 
Sbjct: 939  AGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVC 998

Query: 182  WTSRLAAYSRKKLYRRCLEIFEEM-IDAGCYPDGGTAKVLI 221
            +   +    +       L +F EM    G  PD  T   LI
Sbjct: 999  YNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+ M++  I     +++ +  + S  G + +    + +M + G   + +  N +++L  
Sbjct: 140 VFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLL 199

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +     +  EV   M    +   + TY+ L+   G+   I+ + GL + +    LKP+V 
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           T+T  +    R        EI + M D GC PD  T  VLI A  +  +++
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLD 310



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/186 (19%), Positives = 76/186 (40%), Gaps = 7/186 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN++ F   I         ++A+ + + M   G  P + ++ +L+ A      +   + V
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 315

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M     KPD     ++L+ +      + +++  + MEK  +  D+ T+ IL++   +
Sbjct: 316 FEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +       +  + + P++ T+ + +    R       LE+F  M   G  P   T
Sbjct: 376 AGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYT 435

Query: 217 AKVLIS 222
             V I 
Sbjct: 436 YIVFID 441



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 55   FSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
              +A  +F EMK   GITP + ++  L+      G V +   + N++ ++GL+P+ F  N
Sbjct: 1012 LEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFN 1071

Query: 114  SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            +++  Y   G+ E    V   M  G ++ +  TY  L N
Sbjct: 1072 ALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A    E+MK  G  P + S+   + AY    +  K + V+ +M ++G  P+     S
Sbjct: 281 FDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENGCPPNAVTYTS 340

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   G+ GQ  K  EV   M+     AD   Y+ +I I G+ G ++    +F+ +P + 
Sbjct: 341 VMLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDMPKQG 400

Query: 175 LKPDVVTWTSRLA---AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +  DVVT+ S ++   A+SR++     L + +EM D  C P+ GT   L+
Sbjct: 401 VVRDVVTYNSMISTACAHSREET---ALRLLKEMEDGSCKPNVGTYHRLL 447



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 6/188 (3%)

Query: 58  AHAVFEEMKRLGI---TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           A  V+E+MK  G    TP   S + +L    K G +     V   M K G+  D    NS
Sbjct: 354 ALEVYEKMKSDGCVADTPFYSSMIFIL---GKAGRLKDACDVFEDMPKQGVVRDVVTYNS 410

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++      + E    +L  ME GS   ++ TY+ L+ +  +   ++ ++ L   +    
Sbjct: 411 MISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKRMKVLKFLLDHMFKNN 470

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD+ T++  + A  +           EEM+  G  P   T K L     S+  +E+  
Sbjct: 471 ISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTPKPSTLKKLAGELESKSMLEEKV 530

Query: 235 TLVRTMHK 242
            +   M +
Sbjct: 531 RVEEWMDR 538


>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
           C-169]
          Length = 1226

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 93/182 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+E+M+R GI P + ++  L+  Y K G   +   V+ +M   G++P T   N+++    
Sbjct: 193 VWEDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACN 252

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             GQ++   ++   M    +A + ++YN LI+ + + G + ++   ++ +  +  +  V+
Sbjct: 253 TSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVI 312

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T++S ++A  +   ++  L  F+E +   C P+  T   LI+AC+   Q E+   L   M
Sbjct: 313 TYSSLISACEKSGEWQLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELM 372

Query: 241 HK 242
            +
Sbjct: 373 QQ 374



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 78/156 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++EEM+  G      S+  L++A+SK G++ +      QM + G +      +S+++
Sbjct: 260 ALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLIS 319

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+++          K +   ++ T+N LI    +G   EK   LF+ +  +   P
Sbjct: 320 ACEKSGEWQLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQGCTP 379

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           DVVT+T+ ++AY R   ++  L+ F+ M   GC PD
Sbjct: 380 DVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPD 415



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 72/141 (51%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M + G++ +    ++++N+  + GQ +   +V   M++     ++ TYN LI++YG+ G 
Sbjct: 162 MQRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVPNVVTYNTLIDVYGKLGQ 221

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            E+   + + +  + ++P   T+ + + A +    ++  L+++EEM  AG   +  +   
Sbjct: 222 WEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNA 281

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LISA S    + QV    R M
Sbjct: 282 LISAHSKAGDLPQVLDTYRQM 302



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 60/123 (48%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           + +M + G   ++ ++  L++A  K+G         ++  K   +P+    NS++    +
Sbjct: 299 YRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLKDNCRPNVITFNSLITACAQ 358

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
             Q+EK  E+   M++     D+ TY  LI+ Y RGG  +     FQ++ AK  KPD + 
Sbjct: 359 GAQWEKARELFELMQQQGCTPDVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPDSIV 418

Query: 182 WTS 184
           + +
Sbjct: 419 YNA 421



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 61/133 (45%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D +   + +++     Q E+  E+   M++     ++ T++ L+N+  + G ++    ++
Sbjct: 135 DVYTYTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVW 194

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +    + P+VVT+ + +  Y +   + + L++   M   G  P   T   L+ AC++ 
Sbjct: 195 EDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTS 254

Query: 228 DQIEQVTTLVRTM 240
            Q +    L   M
Sbjct: 255 GQWQTALQLYEEM 267



 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +FE M++ G TP + ++  L++AY + G           M   G KPD+ V N+
Sbjct: 362 WEKARELFELMQQQGCTPDVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPDSIVYNA 421

Query: 115 MLN 117
           +++
Sbjct: 422 IID 424


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 35/220 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V E+M   G  P + ++  L+   SK G       +I  +   G++P+    NS+L+
Sbjct: 181 ALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLH 240

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G +++++E+L  M+K S+   + TYNILIN   + G +E+    F  + ++   P
Sbjct: 241 SLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSP 300

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIF----------------------------------- 202
           D++T+ + L A  ++ +    L++F                                   
Sbjct: 301 DIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLY 360

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +MI+ G  PDG T + L+      DQ+E    ++R M K
Sbjct: 361 NQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGK 400



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 2/182 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + + M R+   P       L+    + G + +   V+  M  SGL PD    N M+
Sbjct: 40  EATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSGLVPDVITYNMMV 99

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-NIYGRGGFIEKMEGLFQSLPAKRL 175
             + +  Q     ++L  M       D+ TYN +I +++  G F + +E  ++    +  
Sbjct: 100 GGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVE-FWRGQLRRGC 158

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P ++ +T  +    +     R LE+ E+M   GCYPD  T   L++  S E + E    
Sbjct: 159 LPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAAL 218

Query: 236 LV 237
           ++
Sbjct: 219 II 220



 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/153 (18%), Positives = 71/153 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VF  +     +P + ++  ++   ++ G + +   + NQM + G+ PD     S
Sbjct: 318 VDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRS 377

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  +  + Q E   E+L  M K  +  + S Y ++IN   R   ++    + + + + R
Sbjct: 378 LVWGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGR 437

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
            KPD   +++ + + +   +     E+ +++I+
Sbjct: 438 YKPDEEIYSTLIKSVADAGMVEEADELHQKLIE 470



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 81/185 (43%), Gaps = 5/185 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V + M   G+ P + ++ +++  + K   +     ++  M  SG  PD    N+++ 
Sbjct: 76  ASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIR 135

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAKRLK 176
                G+F++  E      +      +  Y ILI  ++   G +  +E + + +  +   
Sbjct: 136 SLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALE-VLEDMAIEGCY 194

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL---ISACSSEDQIEQV 233
           PD+VT+ S +   S++  Y     I   ++  G  P+  T   L   + +C   D+++++
Sbjct: 195 PDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEI 254

Query: 234 TTLVR 238
             +++
Sbjct: 255 LAIMK 259



 Score = 43.9 bits (102), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 26/126 (20%), Positives = 58/126 (46%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +L+   + G   +  +++  M + +   + +    LI    R G IE+   + +++  
Sbjct: 26  NEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTMVM 85

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             L PDV+T+   +  + +++  R  +++ E+M  +GC PD  T   +I +     + +Q
Sbjct: 86  SGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQ 145

Query: 233 VTTLVR 238
                R
Sbjct: 146 AVEFWR 151


>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
          Length = 665

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 36/220 (16%)

Query: 57  DAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++  + E M R   I P  +++ +L+ A+    N+ K  GV+++M  +GLKPD    N++
Sbjct: 191 ESSKLLEIMSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTI 250

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-------FIEKMEG--- 165
              Y R  +  +  E+++ M+    A ++ T  I+++ Y + G       FI KM+G   
Sbjct: 251 ARAYARGKETSRAAELISQMQNNKVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQGFGV 310

Query: 166 -----LFQSLPAKRL--------------------KPDVVTWTSRLAAYSRKKLYRRCLE 200
                +F SL    L                    KPDVVT+++ + A+S   L  +C E
Sbjct: 311 HPNLFIFNSLLKGFLDITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEE 370

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +F++MI +G  PD     +L        + ++   L+  M
Sbjct: 371 MFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAM 410



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 4/206 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +  +M+   + P +++  +++  YSK GN+A     I +M   G+ P+ F+ NS+
Sbjct: 261 SRAAELISQMQNNKVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQGFGVHPNLFIFNSL 320

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  +  +   + ++E LT M++     D+ TY+ ++N +   G +EK E +FQ +    +
Sbjct: 321 LKGFLDITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIKSGI 380

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVT 234
           +PD   ++     Y R    ++   + E M   G +P+      +IS  CS+    + + 
Sbjct: 381 EPDNHAFSILAKGYVRAGEPKKAEALLEAMATHGAHPNVVMFTTIISGWCSAAKMEDALR 440

Query: 235 TLVRTMHKDMKTALPIYFNL---YGE 257
              R    D++  L  +  L   YGE
Sbjct: 441 VYDRMCRMDVQPNLNTFETLIWGYGE 466



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 1/204 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +T  L        F     + +++++ G+ P       ++ A+ ++GNV +   +  
Sbjct: 103 LVTYTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKIFR 162

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK-GSYAADISTYNILINIYGRG 157
           +M + G KP     N+++  +G +G+ E+  ++L  M +  +   D  TYNIL+  +   
Sbjct: 163 KMREKGCKPTASTFNALIKGFGIIGKPEESSKLLEIMSREENIKPDDRTYNILVQAWCNK 222

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
             IEK  G+   +    LKPDVVT+ +   AY+R K   R  E+  +M +    P+  T 
Sbjct: 223 NNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAAELISQMQNNKVAPNVRTC 282

Query: 218 KVLISACSSEDQIEQVTTLVRTMH 241
            +++   S E  +      +  M 
Sbjct: 283 GIVVDGYSKEGNMADALKFIYKMQ 306



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 86/187 (45%), Gaps = 7/187 (3%)

Query: 44  PNLFVFIFSIY----FSDAHAVFEE---MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNLF+F   +      +D   V E    M+  G+ P + ++  ++ A+S  G + KCE +
Sbjct: 312 PNLFIFNSLLKGFLDITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEM 371

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M KSG++PD    + +   Y R G+ +K E +L AM       ++  +  +I+ +  
Sbjct: 372 FQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAMATHGAHPNVVMFTTIISGWCS 431

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +E    ++  +    ++P++ T+ + +  Y       +  E+ + M + G  P   T
Sbjct: 432 AAKMEDALRVYDRMCRMDVQPNLNTFETLIWGYGEANEPWKAEELLQIMEEMGVLPRKNT 491

Query: 217 AKVLISA 223
            +++  A
Sbjct: 492 VQLVADA 498



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 81/188 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA     +M+  G+ P +     LL  +    +    +  +  M + G+KPD    ++
Sbjct: 295 MADALKFIYKMQGFGVHPNLFIFNSLLKGFLDITDTKGVDETLTLMQEFGVKPDVVTYST 354

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N +   G  EK EE+   M K     D   ++IL   Y R G  +K E L +++    
Sbjct: 355 IMNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAMATHG 414

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+VV +T+ ++ +         L +++ M      P+  T + LI      ++  +  
Sbjct: 415 AHPNVVMFTTIISGWCSAAKMEDALRVYDRMCRMDVQPNLNTFETLIWGYGEANEPWKAE 474

Query: 235 TLVRTMHK 242
            L++ M +
Sbjct: 475 ELLQIMEE 482



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 1/171 (0%)

Query: 44  PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103
           P +  F  S    +A  +F +M+  G  PT  +   L+  +   G   +   ++  M + 
Sbjct: 143 PMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFGIIGKPEESSKLLEIMSRE 202

Query: 104 -GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
             +KPD    N ++  +      EK   V+  M       D+ TYN +   Y RG    +
Sbjct: 203 ENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSR 262

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
              L   +   ++ P+V T    +  YS++      L+   +M   G +P+
Sbjct: 263 AAELISQMQNNKVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQGFGVHPN 313



 Score = 40.8 bits (94), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/171 (18%), Positives = 73/171 (42%), Gaps = 5/171 (2%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL 132
           T++S   L+    + G   +   +   + + G +P      ++L       +F+ +  +L
Sbjct: 67  TVRSRTKLMKTLIERGKPQEVHSITKGLTEEGHRPTLVTYTTVLAALTLQKRFKSIPLLL 126

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY--- 189
             +E+     D   +N +IN +   G +++   +F+ +  K  KP   T+ + +  +   
Sbjct: 127 KKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFGII 186

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + +   + LEI     +    PD  T  +L+ A  +++ IE+   +V  M
Sbjct: 187 GKPEESSKLLEIMSR--EENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRM 235


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 90/173 (52%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P ++++ +L+      G   + E +  +M   G+ PDT   +SM++   +  + ++ 
Sbjct: 504 GVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            ++  +M   S++ D+ T+N LI  Y + G ++    LF  +  + +  D +T+ + +  
Sbjct: 564 TQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYG 623

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + +       L+IF+EMI +G YPD  T + +++   S++++E+   ++  + 
Sbjct: 624 FRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQ 676



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 84/166 (50%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDAH +F EM+   I P + ++  ++  +  +G  +  E ++ +M +  + PD    +++
Sbjct: 270 SDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSAL 329

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + + G+F + EE+   M   S      TY+ +I+ + +   ++  E +F   P K  
Sbjct: 330 INAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGC 389

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            PD++T+ + +A Y R K     +++  EM +AG   +  T   LI
Sbjct: 390 SPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLI 435



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 13/180 (7%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            D   +  EM   G+     ++  L+  + + G++   + ++ +M  SG+ P+    N++
Sbjct: 410 DDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTL 469

Query: 116 LNLYGRLGQFEKMEEVLTAMEKG-----------SYAADISTYNILI-NIYGRGGFIEKM 163
           L+     G+ +   E+  AM+K                D+ TYNILI  +   G F+E  
Sbjct: 470 LDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEA- 528

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           E L++ +P + + PD +T++S +    ++       ++F+ M      PD  T   LI+ 
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITG 588



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 88/204 (43%), Gaps = 3/204 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S  +SDA  + +EM    I P + +   L+ A+ K G   + E + ++M    + P 
Sbjct: 298 FCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPS 357

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           T   +SM++ + +  + +  E +         + DI T+N LI  Y R   ++    L  
Sbjct: 358 TVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLH 417

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +    L  + +T+T+ +  + +        ++ +EMI +G  P+  T   L+       
Sbjct: 418 EMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNG 477

Query: 229 QIEQVTTLVRTMHK---DMKTALP 249
           +++    + + M K   D+  + P
Sbjct: 478 KLKDALEMFKAMQKSKMDIDASRP 501



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 85/176 (48%), Gaps = 1/176 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSM 115
           +A A+ + M   G+ P   ++  ++    K G+      ++ +M + S + P+  + N++
Sbjct: 200 EAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTI 259

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+      +   M++     DI TYN +IN +   G     E L Q +  +++
Sbjct: 260 IDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKI 319

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            PDVVT+++ + A+ ++  +    E+++EM+     P   T   +I     +++++
Sbjct: 320 NPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLD 375



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 74/171 (43%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           I P +  +  ++    K G  +    +  +M +  + PD    N M+N +   G++   E
Sbjct: 249 IIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAE 308

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           ++L  M +     D+ T++ LIN + + G   + E L+  +  + + P  VT++S +  +
Sbjct: 309 QLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGF 368

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            ++        +F      GC PD  T   LI+      +++    L+  M
Sbjct: 369 CKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEM 419


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 91/191 (47%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S  + ++  +  EM    I P + +  + +  + K G V++ + +IN M + GL+P+   
Sbjct: 362 SSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVT 421

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            NS+++ Y    Q ++  +V   M     A D+ +YNILI  Y +   I++ + LF  + 
Sbjct: 422 YNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMS 481

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            K L P+ +T T+ ++   +        E+F++M   GC PD  T   L+S       ++
Sbjct: 482 HKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLD 541

Query: 232 QVTTLVRTMHK 242
           +   L   + K
Sbjct: 542 EALALFEALKK 552



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 94/191 (49%), Gaps = 1/191 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +F+EM    + P + +  +L+ A  K G V +   V  +M +  ++PD    +S
Sbjct: 295 WKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSS 354

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +   +++   +L  M   +   D+ T++I ++++ + G + + + +   +  + 
Sbjct: 355 LIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERG 414

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P+VVT+ S +  Y          ++F+ M++ GC PD  +  +LI      ++I++  
Sbjct: 415 LRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAK 474

Query: 235 TLVRTM-HKDM 244
            L   M HK +
Sbjct: 475 QLFDEMSHKGL 485



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 85/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F  M+ +GI+PT+ ++  L+     +G   +   +  +M +  +KPD    + +
Sbjct: 261 NEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSIL 320

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G   +   V   M + +   DI TY+ LI+   +    ++   L   + ++ +
Sbjct: 321 VDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNI 380

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDVVT++  +  + +K +      I   MI+ G  P+  T   L+       Q+++   
Sbjct: 381 RPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARK 440

Query: 236 LVRTM 240
           +   M
Sbjct: 441 VFDIM 445



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/167 (19%), Positives = 80/167 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VF +M ++ + P + ++  L+    K+    +   ++N+M    ++PD    +  +
Sbjct: 332 EALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWV 391

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +++ + G   + + ++  M +     ++ TYN L++ Y     +++   +F  +  K   
Sbjct: 392 DVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCA 451

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PDV+++   +  Y + +      ++F+EM   G  P+  T   LIS 
Sbjct: 452 PDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISG 498



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/185 (18%), Positives = 82/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A    ++M  L   P + S+ +++ +  K   V +   +   M   G+ P     NS+
Sbjct: 226 SAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSL 285

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +      GQ+++   +   M + +   D+ T++IL++   + G + +   +F  +    +
Sbjct: 286 IYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAM 345

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PD+VT++S +    +  L++    +  EM+     PD  T  + +     +  + +  +
Sbjct: 346 EPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQS 405

Query: 236 LVRTM 240
           ++  M
Sbjct: 406 IINLM 410



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 73/157 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF+ M   G  P + S+ +L+  Y K+  + + + + ++M   GL P++    +++
Sbjct: 437 EARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLI 496

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+    +E+   M       D+ TY+ L++ + + G +++   LF++L   +LK
Sbjct: 497 SGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLK 556

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           P+ V     L    +        E+F  +      PD
Sbjct: 557 PNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F+EM   G+TP   +H  L++   + G     + +  +M   G  PD    ++
Sbjct: 470 IDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYST 529

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ + + G  ++   +  A++K     +     IL+    + G +E  + LF SL  + 
Sbjct: 530 LLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEE 589

Query: 175 LKPDV 179
           L+PDV
Sbjct: 590 LQPDV 594


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 82/167 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF +M   G+ P   ++  L+  Y K+G + K   + NQM +SGL P+     ++ 
Sbjct: 133 EADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALA 192

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +LGQ +   E+L  M       +I TYN L+N   + G I +   L + +    + 
Sbjct: 193 DGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMY 252

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD +T+T+ + AY +     +  E+  EM+D G  P   T  VL++ 
Sbjct: 253 PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNG 299



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 1/175 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +  EM   G+   + ++  L+    K+GN+ +   ++ +M  +G+ PDT    ++++
Sbjct: 204 ANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMD 263

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+  K  E+L  M        + T+N+L+N +   G +E  E L   +  K + P
Sbjct: 264 AYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMP 323

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
           +  T+ S +  Y  +   R   EI++ M   G  PD  T  +LI   C + +  E
Sbjct: 324 NTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKE 378



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 92/197 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F+EM++  I P   ++  ++    + G + + + V N+M   G++PD     ++++
Sbjct: 99  AYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLID 158

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+ EK   +   M +     ++ TY  L +   + G ++    L   +  K L+ 
Sbjct: 159 GYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQL 218

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++ T+ S +    +    R+ +++ EEM  AG YPD  T   L+ A     ++ +   L+
Sbjct: 219 NICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELL 278

Query: 238 RTMHKDMKTALPIYFNL 254
           R M         I FN+
Sbjct: 279 REMLDRGLQPTVITFNV 295



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           MK  G  P + S+  ++  Y   G + K   +I +M   GLKP+ +  NS++ L  + G+
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +  E VL  M       D   Y  LI+ + + G I+    LF  +  +R+ PD + +T+
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +    R        ++F +M   G  PD  T   LI       ++E+  +L   M
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQM 176



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 85/180 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G+ P + ++  ++    K+G V   E V+ +M   G+ PDT V  ++++ + 
Sbjct: 32  LIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFC 91

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +LG  +   ++   MEK     D   Y  +I    R G + + + +F  + ++ ++PD V
Sbjct: 92  KLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEV 151

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T+ +  Y +     +   +  +M+ +G  P+  T   L        Q++    L+  M
Sbjct: 152 TYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEM 211



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 7/205 (3%)

Query: 44  PNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL+ +   I          DA  V  EM   GI P    +  L+  + K GN+     +
Sbjct: 43  PNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKL 102

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M K  + PD     +++    R G+  + ++V   M       D  TY  LI+ Y +
Sbjct: 103 FDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCK 162

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +EK   L   +    L P+VVT+T+      +        E+  EM   G   +  T
Sbjct: 163 SGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICT 222

Query: 217 AKVLISACSSEDQIEQVTTLVRTMH 241
              L++       I Q   L+  M 
Sbjct: 223 YNSLVNGLCKSGNIRQAVKLMEEME 247



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 70/152 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + EEM+  G+ P   +   L+ AY KTG + K   ++ +M   GL+P     N ++N
Sbjct: 239 AVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMN 298

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  E  E +L  M +     + +TYN L+  Y     +     +++ + A+ + P
Sbjct: 299 GFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMP 358

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           D  T+   +  + + +  +    + +EM + G
Sbjct: 359 DSNTYNILIKGHCKARNMKEAWFLHKEMAEKG 390



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 75/179 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +  EM   G+ PT+ +  +L+  +  +G +   E ++  M + G+ P+T   NS++ 
Sbjct: 274 AHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMK 333

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y          E+   M       D +TYNILI  + +   +++   L + +  K    
Sbjct: 334 QYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNL 393

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
              ++ S +  + +KK      E+FEEM   G   D     + +     E  +E    L
Sbjct: 394 TASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALEL 452



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%)

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
           A D+ +Y+ +IN Y  GG ++K+  L Q +  K LKP++ T+ S +    +         
Sbjct: 7   APDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAER 66

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +  EMI+ G  PD      LI        I+    L   M K
Sbjct: 67  VLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEK 108


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 86/168 (51%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            D    F++M   G  PT+ ++ +++    K G+V    G+  +M   GL PDT   NSM
Sbjct: 244 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 303

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ +G++G+ +        M+      D+ TYN LIN + + G +      ++ +    L
Sbjct: 304 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 363

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           KP+VV++++ + A+ ++ + ++ ++ + +M   G  P+  T   LI A
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 79/188 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F +MKR  + P  +S   LL  ++K G     +     M  +G +P  F  N 
Sbjct: 208 LEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNI 267

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++   + G  E    +   M+      D  TYN +I+ +G+ G ++     F+ +    
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PDV+T+ + +  + +       LE + EM   G  P+  +   L+ A   E  ++Q  
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387

Query: 235 TLVRTMHK 242
                M +
Sbjct: 388 KFYVDMRR 395



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M   G+ P + S+  L+  + K  N+ +   ++N++   G+KPD  +  + +
Sbjct: 455 EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 514

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                L + E  + V+  M++    A+   Y  L++ Y + G   +   L   +    ++
Sbjct: 515 WGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIE 574

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             VVT+   +    + KL  + ++ F  +  D G   +      +I     ++Q+E  TT
Sbjct: 575 VTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATT 634

Query: 236 LVRTM 240
           L   M
Sbjct: 635 LFEQM 639



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 79/181 (43%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           + EMK  G+ P + S+  L+ A+ K G + +       M + GL P+ +   S+++   +
Sbjct: 355 YREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCK 414

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G       +   M +     ++ TY  LI+       +++ E LF  +    + P++ +
Sbjct: 415 IGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS 474

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + +  + + K   R LE+  E+   G  PD       I    S ++IE    ++  M 
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 534

Query: 242 K 242
           +
Sbjct: 535 E 535



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 77/183 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEMK  G+ P   ++  ++  + K G +        +M     +PD    N+++N
Sbjct: 281 ARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 340

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+     E    M+      ++ +Y+ L++ + + G +++    +  +    L P
Sbjct: 341 CFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVP 400

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+TS + A  +         +  EM+  G   +  T   LI      +++++   L 
Sbjct: 401 NEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELF 460

Query: 238 RTM 240
             M
Sbjct: 461 GKM 463



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 1/154 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLY 119
           + +EMK L I  T+ +  +L+    K   V+K     N++    GL+ +  +  +M++  
Sbjct: 564 LLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGL 623

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +  Q E    +   M +     D + Y  L++   + G + +   L   +    +K D+
Sbjct: 624 CKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDL 683

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + +TS +   S     ++     EEMI  G +PD
Sbjct: 684 LAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 717


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 90/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F +MK  G +P++ ++ +L+  +S+  N A    ++ +M   GL P       +++
Sbjct: 358 ASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMD 417

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R    EK  ++ ++MEK    ADI  Y +LI+     G +++   LF+SL    LKP
Sbjct: 418 ALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKP 477

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V + + +  Y ++    R L + +EM + G  P+  +    I     +++  +   L+
Sbjct: 478 NDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLL 537

Query: 238 RTM 240
           + M
Sbjct: 538 KDM 540



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 87/188 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +F+EM+  G+   + ++  L+    +   V + E ++ +M + GL P+    N+
Sbjct: 285 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 344

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  +G  +K   +   M+    +  ++TYNILI  +        +  + + + A+ 
Sbjct: 345 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 404

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P  VT+T  + A  R     +  +I+  M  AG   D     VLI        +++ +
Sbjct: 405 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 464

Query: 235 TLVRTMHK 242
            L +++ +
Sbjct: 465 KLFKSLDE 472



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 84/186 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   ++E+MK  GI P + ++  ++      G +     + ++M + G+  +    N+++
Sbjct: 252 DGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLI 311

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               +  +  + E ++  M++   + ++ +YN LI+ Y   G ++K   LF  + +    
Sbjct: 312 GGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQS 371

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P + T+   +A +S  K      ++  EM   G  P   T  +L+ A    D IE+   +
Sbjct: 372 PSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQI 431

Query: 237 VRTMHK 242
             +M K
Sbjct: 432 YSSMEK 437



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 1/198 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L + I S +F  A  VF E K   +   + S  +++    + G + K   V+ QM + GL
Sbjct: 137 LILLIKSNFFEKAWRVFNETKG-NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGL 195

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+  V  ++++   + G  E+ +++   M +    A+  TY +LIN + + G  +    
Sbjct: 196 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 255

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L++ +    + P+V T+ S +             E+F+EM + G   +  T   LI    
Sbjct: 256 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 315

Query: 226 SEDQIEQVTTLVRTMHKD 243
            E ++ +   L+  M +D
Sbjct: 316 QERRVLEAERLMCRMKRD 333



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 77/181 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F +M  L +     ++ +L+  + K G       +  +M  +G+ P+ +  NSM+    
Sbjct: 221 LFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCC 280

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+     E+   M +   A ++ TYN LI    +   + + E L   +    L P+++
Sbjct: 281 NDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLI 340

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + +  Y       +   +F +M  +G  P   T  +LI+  S       VT +VR M
Sbjct: 341 SYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREM 400

Query: 241 H 241
            
Sbjct: 401 E 401



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/149 (18%), Positives = 73/149 (48%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  G++P+  ++ +L+ A  ++ N+ K   + + M K+GL  D ++   +++    +G
Sbjct: 399 EMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVG 458

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             ++  ++  ++++     +   YN +I  Y + G   +   L + +    + P+V ++ 
Sbjct: 459 DMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYN 518

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           S +    + + +     + ++MI+ G  P
Sbjct: 519 STIQILCKDEKWTEAEVLLKDMIELGLKP 547



 Score = 41.2 bits (95), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/126 (19%), Positives = 56/126 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++  M++ G+   +  + +L+      G++ +   +   + +  LKP+  + N+M+ 
Sbjct: 428 AFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIY 487

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G   +   +L  M +     ++++YN  I I  +     + E L + +    LKP
Sbjct: 488 GYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKP 547

Query: 178 DVVTWT 183
            +  W 
Sbjct: 548 SISIWN 553



 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
           NQM   GL P +   N++L L  +   FEK   V     KG+   D+ ++ I+I      
Sbjct: 119 NQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIKGCCEV 177

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G+++K   +   +    L P+VV +T+ +    +     R  ++F +M +     +  T 
Sbjct: 178 GYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTY 237

Query: 218 KVLISA 223
            VLI+ 
Sbjct: 238 TVLING 243


>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
 gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
          Length = 356

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 85/163 (52%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F E+K  G+  T++S+ +++ A++K G++ K E VI +M +  L+PD F  N+++  Y 
Sbjct: 85  LFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYA 144

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              + E+  +V + M+      DI TY  LI ++ R    ++   +F+ +   + +PD  
Sbjct: 145 MSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFF 204

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            ++  ++ Y +  L    L IF  +   G  P+  T   LISA
Sbjct: 205 VYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISA 247



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 83/169 (49%), Gaps = 3/169 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+ +K L     ++ +  ++ AY +         V  QM   G+ PD    + ++
Sbjct: 14  DAEELFQWIK-LQDWDKLRPYNAMIAAYYQAKRPKDAWDVYYQMLAEGIDPDDVTYDILV 72

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +  G+ G    ++ +   ++    A  + +YN++I  + + G I+K+E + + +  + L+
Sbjct: 73  SGSGKNGY--PIDRLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELR 130

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           PD+ ++ + +AAY+  +   R L++F  M  AG  PD  T   LI   S
Sbjct: 131 PDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFS 179



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 74/171 (43%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +T  + +F  S    +A  +FEEM      P    + LL++ Y K G VA    + +
Sbjct: 168 IVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFH 227

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           ++   G +P+     S+++ +   G  E+  +  + ME     AD+   N +I+ Y + G
Sbjct: 228 RLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAG 287

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +     L   L A+ + P+  ++   +  +         L  +  M +AG
Sbjct: 288 MVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVDEALAAYASMSEAG 338



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/180 (17%), Positives = 78/180 (43%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF  MK  G+ P + ++  L+  +S++    +   +  +M  +  +PD FV + ++++YG
Sbjct: 155 VFSNMKAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYG 214

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G       +   ++   +  +I TY  LI+ +   G +E+    F  + A   + DV 
Sbjct: 215 KAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVH 274

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              + + AY++  +      +   +   G  P+  +  +++        +++      +M
Sbjct: 275 LLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVDEALAAYASM 334



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/142 (19%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ FV+  + S+Y      +DA  +F  ++  G  P + ++  L++A+   G + +    
Sbjct: 201 PDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKH 260

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            +QM   G + D  ++N+M++ Y + G       +L  +       + ++Y I++  +  
Sbjct: 261 FSQMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLH 320

Query: 157 GGFIEKMEGLFQSLPAKRLKPD 178
            G +++    + S+     K +
Sbjct: 321 AGHVDEALAAYASMSEAGFKDE 342


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 10/208 (4%)

Query: 35  INFLLLQHTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           I F+   H  N  +  +      SDA  VFEE     I         ++TA S+  +   
Sbjct: 340 IGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTS----MITALSQCDHGEG 395

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              +  +M + GL+PD FV++S+LN    L  +E+ ++V   + K  + +D    N L+ 
Sbjct: 396 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVY 455

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            Y + G IE  E  F SLP +     VV+W++ +   ++    +R LE+F  M+D G  P
Sbjct: 456 TYAKCGSIEDAELAFSSLPER----GVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 511

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +  T   ++ AC+    +++      +M
Sbjct: 512 NHITMTSVLCACNHAGLVDEAKRYFNSM 539



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  VF+E    G      S   L++AY K         V  +M  SG++P  F  +
Sbjct: 57  FMDDARRVFDEA---GSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFS 113

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N        +   +V   + +  Y  D+ T N L+++Y + G ++    +F+ +P  
Sbjct: 114 CVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-- 171

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
               DVV+W + ++         R +E+  +M  +G  P+      ++ AC+
Sbjct: 172 --DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 221



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
           AM  G + +D+   N L+ +YG  GF++    +F    ++R   + V+W   ++AY +  
Sbjct: 33  AMATG-FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSER---NAVSWNGLMSAYVKND 88

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE---QVTTLVRTM--HKDMKTA 247
                +++F EM+ +G  P       +++AC+    I+   QV  +V  M   KD+ TA
Sbjct: 89  QCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 147



 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE+M    +     S   L++     G+  +   ++ QM  SGL P+ F+++S+L 
Sbjct: 163 ASVIFEKMPDSDVV----SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILK 218

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G F+   ++   M K +  +D      L+++Y +  F++    +F  +  +    
Sbjct: 219 ACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR---- 274

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIF 202
           D++ W + ++  S    +     IF
Sbjct: 275 DLILWNALISGCSHGGRHDEAFSIF 299


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 90/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +  EM ++G+ P + ++  ++    K+GN+ +   ++ +   +GL  DT    ++++
Sbjct: 475 ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+ +K +E+L  M        I T+N+L+N +   G +E  E L   + AK + P
Sbjct: 535 AYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 594

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+ S +  Y  +   +    I+++M   G  PDG T + L+        +++   L 
Sbjct: 595 NATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 654

Query: 238 RTM 240
           + M
Sbjct: 655 QEM 657



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 82/167 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +   M+  G TP + S+  ++  Y + G + K   +I  M + GLKP++++  S++
Sbjct: 264 EAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSII 323

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            L  R+ +  + EE  + M +     D   Y  LI+ + + G I      F  + ++ + 
Sbjct: 324 GLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDIT 383

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PDV+T+T+ ++ + +        ++F EM   G  PD  T   LI+ 
Sbjct: 384 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELING 430



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 30  SHFMLINFLLLQHTPNLFVFIFSI----YFSDAHAVF---EEMKRLGITPTMKSHMLLLT 82
           +H +L+   L  +TP++  +   +     F +   V+   E MKR G+ P    +  ++ 
Sbjct: 265 AHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIG 324

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
              +   +A+ E   ++M + G+ PDT V  ++++ + + G      +    M       
Sbjct: 325 LLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITP 384

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+ TY  +I+ + + G + +   LF  +  K L+PD VT+T  +  Y +    +    + 
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 444

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             MI AGC P+  T   LI     E  ++    L+  M K
Sbjct: 445 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 88/187 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  V   M + G +P + ++  L+    K G++     ++++M K GL+P+ F  N
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++N   + G  E+  +++   E     AD  TY  L++ Y + G ++K + + + +  K
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 555

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L+P +VT+   +  +    +     ++   M+  G  P+  T   L+      + ++  
Sbjct: 556 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615

Query: 234 TTLVRTM 240
           T + + M
Sbjct: 616 TAIYKDM 622



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 90/209 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM   G+ P   +   L+  Y K G++     V N M ++G  P+     +++
Sbjct: 404 EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLI 463

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  +   E+L  M K     +I TYN ++N   + G IE+   L     A  L 
Sbjct: 464 DGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN 523

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D VT+T+ + AY +     +  EI +EM+  G  P   T  VL++       +E    L
Sbjct: 524 ADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKL 583

Query: 237 VRTMHKDMKTALPIYFNLYGEKGVARSNL 265
           +  M           FN   ++   R+NL
Sbjct: 584 LNWMLAKGIAPNATTFNSLVKQYCIRNNL 612



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 15/246 (6%)

Query: 10  DLCVAQRAPHS-WNFNYLPYPSHFMLINFLLLQHT-------PNLFVFIFSIY-----FS 56
           DL VAQ    S W    L     F+   F LL +T       P +F   F +        
Sbjct: 134 DLKVAQSLISSFWERPKLNVTDSFVQF-FDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLR 192

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSM 115
           +A  VFE+M   G+  ++ S  + LT  SK     A    V  +  + G+  +    N +
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +LG+ ++   +L  ME   Y  D+ +Y+ ++N Y R G ++K+  L + +  K L
Sbjct: 253 IHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGL 312

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+   + S +    R        E F EMI  G  PD      LI        I   + 
Sbjct: 313 KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 372

Query: 236 LVRTMH 241
               MH
Sbjct: 373 FFYEMH 378



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 76/183 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A   F EM R GI P    +  L+  + K G++        +MH   + PD     +
Sbjct: 332 LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 391

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + ++G   +  ++   M       D  T+  LIN Y + G ++    +   +    
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+VVT+T+ +    ++       E+  EM   G  P+  T   +++       IE+  
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511

Query: 235 TLV 237
            LV
Sbjct: 512 KLV 514



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF E   +G+   + S+ +++    + G + +   ++  M   G  PD    ++++N
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 289

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G+ +K+ +++  M++     +   Y  +I +  R   + + E  F  +  + + P
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
           D V +T+ +  + ++   R   + F EM      PD  T   +IS  C   D +E
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 404



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/201 (19%), Positives = 88/201 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  E +  G+     ++  L+ AY K+G + K + ++ +M   GL+P     N ++
Sbjct: 509 EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLM 568

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N +   G  E  E++L  M     A + +T+N L+  Y     ++    +++ + ++ + 
Sbjct: 569 NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVG 628

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+ + +  + + +  +    +F+EM   G      T  VLI       +  +   +
Sbjct: 629 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 688

Query: 237 VRTMHKDMKTALPIYFNLYGE 257
              M ++   A    F+ + +
Sbjct: 689 FDQMRREGLAADKEIFDFFSD 709


>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
 gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
          Length = 507

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 4/201 (1%)

Query: 44  PNL--FVFIFSIYFS--DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           PNL  F  + S + S  +A   +EEMK LG+ P + ++  L+  + K   + K  GV+ +
Sbjct: 212 PNLQTFNILLSGWKSSEEAELFYEEMKELGVKPDIVTYNSLIDVFCKGRELEKAYGVVAR 271

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  + PD     S++   G +GQ +K  ++L  M++     D++ YN +I  Y     
Sbjct: 272 MREEDILPDVITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKR 331

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           ++    L   + +K + P+  ++      +S     R   + +  M+DAGC P+  +   
Sbjct: 332 LDAAYSLMAEMESKGMSPNATSYNLFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCMF 391

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI      +++E    L   M
Sbjct: 392 LIKLFKRHEKVEMALQLWNDM 412



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           K G +P+    N +L+ +      E+ E     M++     DI TYN LI+++ +G  +E
Sbjct: 207 KKGFRPNLQTFNILLSGWK---SSEEAELFYEEMKELGVKPDIVTYNSLIDVFCKGRELE 263

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           K  G+   +  + + PDV+T+TS +          +  ++ +EM + GCYPD      +I
Sbjct: 264 KAYGVVARMREEDILPDVITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVI 323

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
                  +++   +L+  M     +     +NL+
Sbjct: 324 RNYCIAKRLDAAYSLMAEMESKGMSPNATSYNLF 357


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE 126
           R G+   ++    +L  Y+K G ++        M       D    NS++  Y + G+ E
Sbjct: 213 RCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYR----DRVSWNSIITGYCQKGELE 268

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
           K  ++   M++      + T+NILIN Y + G  +    L + + + R+ PDV TWTS +
Sbjct: 269 KSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMI 328

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           + +++     + LE+F EM+ AG  P+G T    ISAC+S
Sbjct: 329 SGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACAS 368



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 5/187 (2%)

Query: 58  AHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +F  M++ G I     S   L+  Y + G+  K  G+  QM    ++P++  + S+L
Sbjct: 476 AMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSIL 535

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                L   +K++E+   + + +  +++S  N LI+ Y + G I   + +FQ + +K   
Sbjct: 536 PACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSK--- 592

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+++W S +A Y         L++F++M   G  P  GT   +I A S    +++   +
Sbjct: 593 -DIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQV 651

Query: 237 VRTMHKD 243
             +M +D
Sbjct: 652 FSSMMED 658



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 39/221 (17%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           +H +FE+M+  GI P + +  +L+ +YS++G       ++ +M    + PD F   SM++
Sbjct: 270 SHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMIS 329

Query: 118 LYG----RLGQFEKMEEVLTA-------------------------MEKGSYAA------ 142
            +     R    E   E+L A                         ME  S A       
Sbjct: 330 GFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVE 389

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+   N LI++Y + G +E    +F  +    LK DV TW S +  Y +     +  ++F
Sbjct: 390 DLLVGNSLIDMYSKSGELEDARRVFDMI----LKKDVYTWNSMIGGYCQAGYCGKAYDLF 445

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +M ++   P+  T   +IS        +Q   L   M KD
Sbjct: 446 IKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKD 486



 Score = 40.8 bits (94), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 76/173 (43%), Gaps = 35/173 (20%)

Query: 70  ITPTMK-----SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF--VINSMLN----- 117
           +TP +K     +H+  L    +  +   C   I Q   S +KP+T+  ++ S ++     
Sbjct: 44  LTPKLKPKVTDAHLNHLCKNGRLADAIACLDAIAQ-GGSNVKPNTYMQLLQSCIDQGSAE 102

Query: 118 ----LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
               L+ R+G  E+M   +                 L+++Y + G + +   +F  +  +
Sbjct: 103 LGRKLHARIGLLEEMNPFVETK--------------LVSMYAKCGSLGEARKVFGEMRER 148

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
            L      W++ + AYSR++++R  ++ F  M++ G  PD      ++ AC +
Sbjct: 149 NL----YAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGN 197


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   FE+MK  GI P + +    L + +K G   + + +   +   GL PD+   N M+ 
Sbjct: 454 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 513

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++G+ ++  ++L+ M +     D+   N LIN   +   +++   +F  +   +LKP
Sbjct: 514 CYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 573

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            VVT+ + LA   +    +  +E+FE M+  GC P+  T   L       D++
Sbjct: 574 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEV 626



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 91/186 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  +K +G+ P   ++ +++  YSK G + +   ++++M ++  +PD  V+NS++
Sbjct: 488 EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLI 547

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   +  + ++  ++   M++      + TYN L+   G+ G I++   LF+ +  K   
Sbjct: 548 NTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCP 607

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ +T+ +      +       L++  +M+D GC PD  T   +I       Q+++    
Sbjct: 608 PNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCF 667

Query: 237 VRTMHK 242
              M K
Sbjct: 668 FHQMKK 673



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 2/189 (1%)

Query: 37  FLLLQHTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           F+L  ++ N  + +   S + ++A  V+  M   G  P+++++  L+    K  ++    
Sbjct: 186 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVM 245

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           G++ +M   GLKP+ +     + + GR G+  +  E+L  M+      D+ TY +LI+  
Sbjct: 246 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 305

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
                ++  + +F  +   R KPD VT+ + L  +S  +      + + EM   G  PD 
Sbjct: 306 CTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDV 365

Query: 215 GTAKVLISA 223
            T  +L+ A
Sbjct: 366 VTFTILVDA 374



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 7/167 (4%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A A+F+ M + G+ P +K++ +L+      G V +      ++ +SGL PD    N ++N
Sbjct: 947  ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIIN 1006

Query: 118  LYGRLGQFEKMEEVLT---AMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
                LG+F ++EE L     M+K      D+ TYN LI   G  G +E+   ++  +   
Sbjct: 1007 ---GLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1063

Query: 174  RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
             L+P+V T+ + +  YS          +++ M+  G  P+ GT + L
Sbjct: 1064 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 7/198 (3%)

Query: 56  SDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           S A  +FE+  K LG+ P + ++ LL+    +   +   + V  Q+  +G  PD    N 
Sbjct: 768 SGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNF 827

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ YG+ G+ +++ E+   M       +  T+NI+I+   + G ++    L+  L + R
Sbjct: 828 LLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDR 887

Query: 175 -LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P   T+   +   S+        ++FE M D GC P+     +LI+      + +  
Sbjct: 888 DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAA 947

Query: 234 TTLVRTMHK-----DMKT 246
             L + M K     D+KT
Sbjct: 948 CALFKRMVKEGVRPDLKT 965



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 7/207 (3%)

Query: 41  QHTPNLFVFIFSI-YFSD------AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           +H P+   +I  +  FSD       +  + EM++ G  P + +  +L+ A  K GN  + 
Sbjct: 325 RHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEA 384

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
              ++ M   G+ P+    N+++    R+ + +   E+   ME         TY + I+ 
Sbjct: 385 FAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDY 444

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+ G        F+ +  K + P++V   + L + ++    R   +IF  + D G  PD
Sbjct: 445 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 504

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTM 240
             T  +++   S   +I++   L+  M
Sbjct: 505 SVTYNMMMKCYSKVGEIDEAIKLLSEM 531



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 8/211 (3%)

Query: 42  HTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P++  F   +        F +A A  + M+  GI P + ++  L+    +   +    
Sbjct: 361 HVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDAL 420

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            + + M   G+KP  +     ++ YG+ G      E    M+    A +I   N  +   
Sbjct: 421 EIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSL 480

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G   + + +F  L    L PD VT+   +  YS+       +++  EM++  C PD 
Sbjct: 481 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDV 540

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
                LI+     D++++   +   M K+MK
Sbjct: 541 IVVNSLINTLYKADRVDEAWKMFMRM-KEMK 570



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 1/185 (0%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +A  +FE M   G  P    + +L+  + K G       +  +M K G++PD    + ++
Sbjct: 911  EAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLV 970

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-L 175
            +    +G+ ++       +++     D+  YN++IN  G+   +E+   LF  +   R +
Sbjct: 971  DCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGI 1030

Query: 176  KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             PD+ T+ S +       +     +I+ E+  AG  P+  T   LI   S   + E    
Sbjct: 1031 TPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYA 1090

Query: 236  LVRTM 240
            + +TM
Sbjct: 1091 VYQTM 1095



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 36/221 (16%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV------ 111
            A  VF ++K  G  P + ++  LL AY K+G + +   +  +M     +P+T        
Sbjct: 806  AQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVIS 865

Query: 112  -------INSMLNLY-----------------------GRLGQFEKMEEVLTAMEKGSYA 141
                   ++  L+LY                        + G+  + +++   M      
Sbjct: 866  GLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCR 925

Query: 142  ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
             + + YNILIN +G+ G  +    LF+ +  + ++PD+ T++  +            L  
Sbjct: 926  PNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHY 985

Query: 202  FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            F E+ ++G  PD     ++I+      ++E+   L   M K
Sbjct: 986  FRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKK 1026



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/213 (18%), Positives = 85/213 (39%), Gaps = 4/213 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            + +EM+ LG+ P + +  + +    + G + +   ++ +M   G  PD      +++  
Sbjct: 246 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 305

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               + +  +EV   M+ G +  D  TY  L++ +     ++ +   +  +      PDV
Sbjct: 306 CTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDV 365

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+T  + A  +   +       + M D G  P+  T   LI       +++    +   
Sbjct: 366 VTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDN 425

Query: 240 MH----KDMKTALPIYFNLYGEKGVARSNLGQY 268
           M     K       ++ + YG+ G + S L  +
Sbjct: 426 MESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 458



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 62   FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            ++ M     +PT  ++  L+   SK+G + + + +   M   G +P+  + N ++N +G+
Sbjct: 881  YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGK 940

Query: 122  LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
             G+ +    +   M K     D+ TY++L++     G +++    F+ L    L PDVV 
Sbjct: 941  AGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVC 1000

Query: 182  WTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLI 221
            +   +    +       L +F EM  + G  PD  T   LI
Sbjct: 1001 YNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLI 1041



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 76/171 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+ M++  I     +++ +    S  G + +    + +M + G   + +  N +++L  
Sbjct: 142 VFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLL 201

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +     +  EV   M    +   + TY+ L+   G+   IE + GL + +    LKP+V 
Sbjct: 202 KSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVY 261

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           T+T  +    R        EI + M D GC PD  T  VLI A  +  +++
Sbjct: 262 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLD 312



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 5/241 (2%)

Query: 32  FMLINFLLLQHTPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           F L+   +++   N ++ IF           A     +M+  G      S+  L+    K
Sbjct: 143 FDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLK 202

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
           +    +   V  +M   G +P     +S++   G+    E +  +L  ME      ++ T
Sbjct: 203 SRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYT 262

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           + I I + GR G I +   + + +  +   PDVVT+T  + A    +      E+F +M 
Sbjct: 263 FTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMK 322

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLG 266
                PD  T   L+   S    ++ V      M KD      + F +  +      N G
Sbjct: 323 TGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFG 382

Query: 267 Q 267
           +
Sbjct: 383 E 383



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 7/186 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN++ F   I         ++A+ + + M   G  P + ++ +L+ A      +   + V
Sbjct: 258 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 317

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M     KPD     ++L+ +      + + +  + MEK  +  D+ T+ IL++   +
Sbjct: 318 FAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCK 377

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +       +  + + P++ T+ + +    R       LEIF+ M   G  P   T
Sbjct: 378 AGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYT 437

Query: 217 AKVLIS 222
             V I 
Sbjct: 438 YIVFID 443



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 55   FSDAHAVFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
              +A  +F EMK+  GITP + ++  L+      G V +   + N++ ++GL+P+ F  N
Sbjct: 1014 LEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFN 1073

Query: 114  SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            +++  Y   G+ E    V   M  G ++ +  TY  L N
Sbjct: 1074 ALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1112


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 38/248 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D  AVF  M   GI P + S+  L++AY+  G   +   V ++M +SG  PD     S++
Sbjct: 130 DCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLI 189

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +GR  Q  +  EV   M++     ++ +YN L++ YG  G++ +   + + +    + 
Sbjct: 190 STFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIH 249

Query: 177 PDVVTWTSRLAAYSR--KKL---------------------------------YRRCLEI 201
           P+VV+  + LAA  R  +K+                                 Y + + +
Sbjct: 250 PNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINL 309

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVA 261
           +  M +    PD  T  +LIS C    + E+     + M   +   +P+   +Y     A
Sbjct: 310 YRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEM---LDLRIPLSSEIYSSMICA 366

Query: 262 RSNLGQYI 269
            S  GQ +
Sbjct: 367 YSKQGQLV 374



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 35/221 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ MKR    P + S+  L+ AY   G + +   ++ +M + G+ P+   I ++L 
Sbjct: 201 AREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLA 260

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR GQ   ++ VL+A E      +    N  I  Y   G  EK   L++S+  K  KP
Sbjct: 261 ACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKP 320

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID------------------------------ 207
           D VT+T  ++   R   Y   L  F+EM+D                              
Sbjct: 321 DSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLF 380

Query: 208 -----AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
                +GC PD  T   +I+A S+ +  E+V  L + M  +
Sbjct: 381 NSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEAN 421



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  V ++M   G+ P + +H ++L+AY      +K       M  + ++PDT  +N 
Sbjct: 21  WREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNI 80

Query: 115 MLNLYGRLGQFEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           +++   ++ Q+ +  E+ ++M  ++     D+ T+  +I++Y   G IE  + +F ++ A
Sbjct: 81  VIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLA 140

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + +KP++V++ + ++AY+   + +    +F+EM  +G  PD  +   LIS      Q  +
Sbjct: 141 EGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPAR 200

Query: 233 VTTLVRTMHKD 243
              +   M ++
Sbjct: 201 AREVFDMMKRN 211



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  +     +S A + FE MK   I P   +  +++    K     +   + +
Sbjct: 40  LVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFS 99

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   +S  +PD     S+++LY   GQ E  + V + M       +I +YN LI+ Y  
Sbjct: 100 SMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYAS 159

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  ++   +F  +      PDVV++TS ++ + R +   R  E+F+ M    C P+  +
Sbjct: 160 HGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVS 219

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              L+ A  S   + Q   ++R M +D
Sbjct: 220 YNALMDAYGSNGYLPQAVDILREMEQD 246



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 2/172 (1%)

Query: 55  FSDAHAVFEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +  A  +F  M  KR    P + +   ++  YS  G +  C+ V + M   G+KP+    
Sbjct: 91  YGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSY 150

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++++ Y   G  ++   V   M++  +  D+ +Y  LI+ +GR     +   +F  +  
Sbjct: 151 NALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKR 210

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            + KP++V++ + + AY       + ++I  EM   G +P+  +   L++AC
Sbjct: 211 NKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAAC 262



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           I P+  +   L+ A    GN  +   V  +M  +G+ PD    N +L+ Y    Q+ K  
Sbjct: 1   IPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKAL 60

Query: 130 EVLTAMEKGSYAADISTYNI----LINIYGRGGFIEKMEGLFQSLPAKR--LKPDVVTWT 183
                M+  +   D +T NI    LI +   G  IE    +F S+  KR   +PDVVT+T
Sbjct: 61  SYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIE----IFSSMREKRSECRPDVVTFT 116

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           S +  YS +     C  +F  M+  G  P+  +   LISA +S    ++  ++   M +
Sbjct: 117 SIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKR 175



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 60/131 (45%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           + +SM+  Y + GQ  K E +  +++      D+ TY  +IN Y      EK+  L+Q +
Sbjct: 359 IYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEM 418

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            A  ++ D +  ++ + A+++       L + E M + G   +      ++SACS     
Sbjct: 419 EANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDW 478

Query: 231 EQVTTLVRTMH 241
            + T L+  M 
Sbjct: 479 RKATDLINLME 489



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 68/151 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A   F+EM  L I  + + +  ++ AYSK G + K E + N +  SG  PD     +
Sbjct: 338 YEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTA 397

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+N Y     +EK+  +   ME  +   D    + L+  + +G     +  L + +  K 
Sbjct: 398 MINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKG 457

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +  +   +   L+A S  + +R+  ++   M
Sbjct: 458 IPFNDANFFEMLSACSILRDWRKATDLINLM 488



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 42/105 (40%)

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
           ST+N LIN  G  G   +   + + +    + PD+VT    L+AY     Y + L  FE 
Sbjct: 6   STFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFEL 65

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           M      PD  T  ++I       Q  Q   +  +M +      P
Sbjct: 66  MKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRP 110


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 86/168 (51%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +FEEMK  G+TPT+ S+  L+  +   G   + + + N+M   G++P+    N +
Sbjct: 259 DEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVL 318

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +++  + G+  + +++L  M +     ++ TYN LI  +   G +     LF S+P+K  
Sbjct: 319 IDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGC 378

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +PDV+ +T  +  Y +       ++++  M+  G  PD  T   L++ 
Sbjct: 379 EPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTG 426



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 86/184 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  ++  M ++G  P +K++  LLT   + G V   + +   M   G+  D ++    L
Sbjct: 400 EAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFL 459

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   + G   +  E+   ++  +   DI  +N LI+   + G +E    LF+ LP + L+
Sbjct: 460 NGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQ 519

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+   +  + R     +   +F++M   GC PD  T   LI       ++E+V  L
Sbjct: 520 PDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVEL 579

Query: 237 VRTM 240
           +  M
Sbjct: 580 LHMM 583



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 69/150 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F  MK  GI   +  + + L    K G + +   + N++    +K D    N ++
Sbjct: 435 DAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLI 494

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+ E   E+   + +     D+ TYNI+I+ + RGG + K   LFQ +      
Sbjct: 495 DGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCT 554

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           PD +T+ + +  +   K   + +E+   M+
Sbjct: 555 PDKITYATLIRGFFESKKLEKVVELLHMMV 584



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 62/134 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +F EM   G+ P + +  +L+    K G V + + ++  M + G+ P+    NS
Sbjct: 293 WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNS 352

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  +  +G      E+  +M       D+  Y +LIN Y +   +E+   L+  +    
Sbjct: 353 LIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVG 412

Query: 175 LKPDVVTWTSRLAA 188
            +PDV T+ + L  
Sbjct: 413 KRPDVKTYGALLTG 426



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 89/202 (44%), Gaps = 7/202 (3%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + S+ +++ A  K     +   +  +M   G+ P      S+++ +   G++E+ + +
Sbjct: 240 PVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRL 299

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
              M       ++ T+N+LI++  + G + + + L + +  + + P+++T+ S +  +  
Sbjct: 300 FNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL 359

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-----HKDMKT 246
                   E+F  M   GC PD     VLI+      ++E+   L   M       D+KT
Sbjct: 360 VGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKT 419

Query: 247 ALPIYFNLY--GEKGVARSNLG 266
              +   L+  G+ G A+   G
Sbjct: 420 YGALLTGLFQGGKVGDAKKLFG 441



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 67/156 (42%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           +I  + A   F  M     TP + S   LL+  +K  + ++   + NQM  SG+ PD   
Sbjct: 74  NITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCT 133

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +N +LN    + +  +   V+  + +  Y  DI TY  LI        I K   LF  + 
Sbjct: 134 LNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQ 193

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
                P+ +T+ + +    R       L++ +EM++
Sbjct: 194 KLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLN 229



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 37/223 (16%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + E M + GI P + ++  L+  +   G++     +   M   G +PD      ++
Sbjct: 330 EAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLI 389

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN------------------------ 152
           N Y +  + E+  ++   M +     D+ TY  L+                         
Sbjct: 390 NGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIP 449

Query: 153 ----IYG--------RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
               IYG         G   E ME LF  L +  +K D+  +   +    +        E
Sbjct: 450 GDLYIYGIFLNGLCKNGCLFEAME-LFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWE 508

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           +FE++      PD  T  ++I       Q+ +   L + M K+
Sbjct: 509 LFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKN 551



 Score = 41.2 bits (95), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 52/123 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F ++K   I   ++    L+    K G +     +  ++ +  L+PD    N M+
Sbjct: 470 EAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMI 529

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R GQ  K   +   MEK     D  TY  LI  +     +EK+  L   +  + + 
Sbjct: 530 HEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVS 589

Query: 177 PDV 179
            DV
Sbjct: 590 LDV 592



 Score = 37.0 bits (84), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/88 (20%), Positives = 45/88 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE++ +  + P + ++ +++  + + G V K   +  +M K+G  PD     +++ 
Sbjct: 506 AWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 565

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADIS 145
            +    + EK+ E+L  M +   + D++
Sbjct: 566 GFFESKKLEKVVELLHMMVQRDVSLDVN 593


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S    + +EM      P + ++ +L+ A  K G + +  GV+  M K G+KP+    N+
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNA 445

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ Y         +++   M K     DI  YN+LIN Y +   +++   LF+ +  K 
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKN 505

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD+ ++ S +             E+ +EM D+G  PD  T  +L+ A       ++  
Sbjct: 506 LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565

Query: 235 TLVRTM 240
           +L R +
Sbjct: 566 SLFRQI 571



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 90/180 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM++  + P +  +  L+    K G V+   G+ +Q+ + G+  D    NS+++   
Sbjct: 182 LLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCC 241

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            +G+++++ ++LT M + +   D  T+NILI+   + G I + +G+   +  +  KPD+V
Sbjct: 242 SVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIV 301

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + +  Y  ++      E+F  M+  G  PD     VLI        +++   L + +
Sbjct: 302 TYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL 361



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M + G+ P + ++ +L+  Y KT  V +   +  ++    L P     NS++
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLI 377

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +     G+   ++++L  M   +   D+ TYNILI+   + G I +  G+   +  K +K
Sbjct: 378 DGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVK 437

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++VT+ + +  Y  +       +IF  M+ +G  PD     VLI+     + +++   L
Sbjct: 438 PNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVL 497

Query: 237 VRTM-HKDMKTALPIYFNL 254
            + M HK++   +  Y +L
Sbjct: 498 FKEMRHKNLIPDIASYNSL 516



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  +M R  + P   +  +L+ A  K G + + +GV+  M K G KPD    N+++  Y 
Sbjct: 252 LLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYC 311

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
                 +  E+   M K     D+  YN+LI+ Y +   +++   LF+ L  K L P + 
Sbjct: 312 SRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIA 371

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI-EQVTTLVRT 239
           ++ S +             ++ +EM  +   PD  T  +LI A   E +I E +  LV  
Sbjct: 372 SYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMM 431

Query: 240 MHKDMKTALPIY 251
           M K +K  +  Y
Sbjct: 432 MKKGVKPNIVTY 443



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 91/199 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+E+    + PT+ S+  L+     +G ++  + ++++MH S   PD    N +
Sbjct: 352 DEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNIL 411

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+  +   VL  M K     +I TYN +++ Y     +   + +F  +    L
Sbjct: 412 IDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGL 471

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PD++ +   +  Y + ++    + +F+EM      PD  +   LI    +  +I  V  
Sbjct: 472 EPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQE 531

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L+  M    ++   I +N+
Sbjct: 532 LLDEMCDSGQSPDVITYNI 550



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 2/172 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V   M + G+ P + ++  ++  Y    NV   + + N+M KSGL+PD    N ++
Sbjct: 423 EALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLI 482

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y +    ++   +   M   +   DI++YN LI+     G I  ++ L   +      
Sbjct: 483 NGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQS 542

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSSE 227
           PDV+T+   L A+ + + + + + +F ++++ G +PD  T   ++ + C  E
Sbjct: 543 PDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGE 593



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 87/201 (43%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + SDA  +  ++   GI     ++  L+      G   +   ++ +M +  + PD +  N
Sbjct: 210 FVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++   + G+  + + VL  M K     DI TYN L+  Y     + +   LF  +  +
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKR 329

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L+PDV+ +   +  Y + K+    + +F+E+ +    P   +   LI    +  +I  V
Sbjct: 330 GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHV 389

Query: 234 TTLVRTMHKDMKTALPIYFNL 254
             L+  MH   +    + +N+
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNI 410



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 91/197 (46%), Gaps = 1/197 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  M + G+ P + ++ +L+  Y KT  V +   +  +M    L PD    NS+++
Sbjct: 459 AKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLID 518

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               LG+   ++E+L  M     + D+ TYNIL++ + +    +K   LF+ +  + + P
Sbjct: 519 GLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWP 577

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T  + +    + +  +   +  + ++  GC P+  T  +LI+A   +    +   L+
Sbjct: 578 DFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLL 637

Query: 238 RTMHKDMKTALPIYFNL 254
             M  + +    I F +
Sbjct: 638 SKMEDNDRPPDAITFEI 654



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 88/190 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++  A ++F +++  GI+P++ +  +L+  Y    + A    ++  + KSG +P+    N
Sbjct: 70  HYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFN 129

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N +   G   K  +    +    Y  D  TY  LIN   + G I+    L Q +   
Sbjct: 130 TIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKS 189

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++P++V +++ +    +       L +  ++ + G   D  T   LI  C S  + ++V
Sbjct: 190 SVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEV 249

Query: 234 TTLVRTMHKD 243
           T L+  M ++
Sbjct: 250 TQLLTKMVRE 259



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 5/226 (2%)

Query: 47  FVFIFSIYFSDAHAVFE-----EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           F  + + YF  +H  F       + + G  P + +   ++  +   G + K       + 
Sbjct: 93  FTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLL 152

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
             G   D F   +++N   + GQ +    +L  MEK S   ++  Y+ LI+   + GF+ 
Sbjct: 153 AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVS 212

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
              GL   +  + +  D VT+ S +        ++   ++  +M+     PD  T  +LI
Sbjct: 213 DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILI 272

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
            A   E +I +   ++  M K  +    + +N   E   +R N+ +
Sbjct: 273 DALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHE 318



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 65/154 (42%)

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
           NV       N+M +    P T V + +L    R+G +     + T ++    +  I+T+ 
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFT 94

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           ILIN Y           L  ++     +P++VT+ + +  +    +  + L+  + ++  
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           G   D  T   LI+  S   QI+    L++ M K
Sbjct: 155 GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEK 188



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 61/158 (38%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F  M R+   P       LL A  + G+      +  Q+   G+ P       +
Sbjct: 37  DDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTIL 96

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y           +L  + K  Y  ++ T+N +IN +   G I K     Q+L A+  
Sbjct: 97  INCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGY 156

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             D  T+ + +   S+    +  L + +EM  +   P+
Sbjct: 157 LFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPN 194



 Score = 44.7 bits (104), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 34/188 (18%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+EM+   + P + S+  L+      G +   + ++++M  SG  PD    N +
Sbjct: 492 DEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNIL 551

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSY----------------------------------A 141
           L+ + +   F+K   +   + +G +                                  +
Sbjct: 552 LDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCS 611

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            ++ TY ILIN   + G   +   L   +      PD +T+   +    ++    +  ++
Sbjct: 612 PNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKL 671

Query: 202 FEEMIDAG 209
            EEMI  G
Sbjct: 672 REEMIARG 679


>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Cucumis sativus]
          Length = 580

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 40/237 (16%)

Query: 47  FVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           FV + + Y     F+ A  V   M + G  P + SH  L+ AY +       E +  +M 
Sbjct: 141 FVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQ 200

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM---EKGSYAADISTYNILINIYGRGG 158
             G +P       ML  +    +F++ EE+  ++   EK     D   ++++I ++ + G
Sbjct: 201 SGGPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAG 260

Query: 159 FIEKMEGLFQSLPAKR--------------------------------LKPDVVTWTSRL 186
             EK   +F  + A+                                 L+PDVV++   +
Sbjct: 261 NYEKARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLI 320

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           +AY + +     L +FEEM+DAG  P      +L+ A +    +EQ   + ++M +D
Sbjct: 321 SAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRD 377



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AVFEEM   GI PT K++ +LL A++ +G V + + V   M +    PD     +ML
Sbjct: 331 EALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTML 390

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y      E  E     +++  +  ++ TY  LI  Y +   +EKM   ++ +    ++
Sbjct: 391 SAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIR 450

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +    T+ + AY + K +   +  F E+   G  PD     +L+S   + +++++   L
Sbjct: 451 VNQTILTTIMDAYGKNKDFGSAVIWFNEIESCGLRPDQKAKNILLSLAKTAEELDEANQL 510

Query: 237 V 237
           V
Sbjct: 511 V 511



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 80/155 (51%)

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           F   + +   ++++M+R G+ P + S+ LL++AY K     +   V  +M  +G++P   
Sbjct: 290 FETNYKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHK 349

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N +L+ +   G  E+ + V  +M++   + DI +Y  +++ Y     +E  E  F+ L
Sbjct: 350 AYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRL 409

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
                +P+VVT+ + +  Y++     + ++ +EEM
Sbjct: 410 KQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEM 444



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 88/188 (46%), Gaps = 3/188 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           +++F  +  +  A  VF EM   G+  T  ++  L++  +    V+K   + +QM ++GL
Sbjct: 253 IYMFKKAGNYEKARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSK---IYDQMQRAGL 309

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD      +++ YG+  + E+   V   M           YNIL++ +   G +E+ + 
Sbjct: 310 QPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKI 369

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +F+S+   R  PD+ ++T+ L+AY            F  +   G  P+  T   LI   +
Sbjct: 370 VFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYA 429

Query: 226 SEDQIEQV 233
             + +E++
Sbjct: 430 KINNLEKM 437



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/201 (19%), Positives = 89/201 (44%), Gaps = 6/201 (2%)

Query: 46  LFVFIFSIYFSDAHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           L  F+    F +A  +F+ +   ++  + P  K   +++  + K GN  K   V  +M  
Sbjct: 215 LKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEMAA 274

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G+   T   NS+++       ++++ ++   M++     D+ +Y +LI+ YG+    E+
Sbjct: 275 RGVPQTTVTYNSLMSFET---NYKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEE 331

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              +F+ +    ++P    +   L A++   +  +   +F+ M    C PD  +   ++S
Sbjct: 332 ALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLS 391

Query: 223 ACSSEDQIEQVTTLVRTMHKD 243
           A  +   +E      R + +D
Sbjct: 392 AYVNASDMEGAENFFRRLKQD 412



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEG 165
           P   V+ +++  + +L ++  + E+L  +   S+       + +LI  YG+ G   + E 
Sbjct: 101 PKDLVLGTLVR-FKQLKKWNLVSEILEWLRTQSWWNFSEMDFVMLITAYGKLGDFNRAEK 159

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +  K   P+VV+ T+ + AY R + Y     IF  M   G  P   T ++++
Sbjct: 160 VLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQIML 215


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 83/173 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS    + EEM+  G  P + S+  L+    K G + + E V+  M   G+ P+  + N 
Sbjct: 363 FSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNM 422

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++    +G+  +       M K    A I TYN LI    + G +++ E +F  + +  
Sbjct: 423 LIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTG 482

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             PDV+T+ S ++ YS     ++CLE++E M   G  P   T   LIS CS E
Sbjct: 483 HCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKE 535



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +LL    K G V K E V+  + + GL P   + N+++N Y ++G  ++    +  ME  
Sbjct: 247 ILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESR 306

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               +   +N +I+ +     I+K E   + +  K + P V T+   +  Y R  ++ RC
Sbjct: 307 GLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRC 366

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +I EEM + G  P+  +   LI+    + +I +   ++R M
Sbjct: 367 FQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDM 408



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 84/196 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V + +   G+ P    +  ++  Y + G++ +    I QM   GL+P+    NS+++
Sbjct: 261 AEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVID 320

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  +   +K EE +  M     A  + TYNILI+ YGR     +   + + +     KP
Sbjct: 321 KFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKP 380

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+++ S +    +         +  +M+  G  P+     +LI    +  ++ +     
Sbjct: 381 NVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFF 440

Query: 238 RTMHKDMKTALPIYFN 253
             M K+   A  + +N
Sbjct: 441 DEMSKNGIGATIVTYN 456



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 8/206 (3%)

Query: 42  HTPNLFVF--IFSIYFSDAHA-----VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P++  +  + S Y +  ++     ++E MK+LG+ PT+ +   L++  SK G   K E
Sbjct: 483 HCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLK-E 541

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            + N+M +  L PD  V N+M++ Y   G  +K   +   M       D  TYN LI  +
Sbjct: 542 TLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGH 601

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G + + + L   + AK L P+  T++  +  +   K +      + EM++ G  P+ 
Sbjct: 602 LKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNV 661

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
                L +    + ++++  ++   M
Sbjct: 662 CICNELSTGLRKDGRLQEAQSICSEM 687



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 78/181 (43%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
            + S  F +   +F+EM  LG  P    +   + A  K G++     +   M +  + P+
Sbjct: 41  LVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPN 100

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            FV N ++    +  +    E++   M   +   +  T+N LI+ Y + G ++   GL +
Sbjct: 101 VFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRE 160

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +  ++++P ++T+ S L+   + +       +  E+   G  PDG T  ++       D
Sbjct: 161 RMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSD 220

Query: 229 Q 229
            
Sbjct: 221 D 221



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 43/241 (17%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+FV+   I          DA  +F EM    + P   +   L+  Y K G V    G
Sbjct: 98  VPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIG 157

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL----- 150
           +  +M K  ++P     NS+L+   +  + E+   +L  ++   +  D  TY+I+     
Sbjct: 158 LRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLL 217

Query: 151 ---------INIY----GRG------------------GFIEKMEGLFQSLPAKRLKPDV 179
                    +++Y    G+G                  G +EK E + +SL    L P  
Sbjct: 218 KSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGE 277

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           V + + +  Y +     R +   E+M   G  P+      +I        I++    V+ 
Sbjct: 278 VIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKK 337

Query: 240 M 240
           M
Sbjct: 338 M 338



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/185 (18%), Positives = 74/185 (40%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S    +++ M++ G  P+     +++ +  ++        +  +M   G +PD  V    
Sbjct: 13  SQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRA 72

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    +LG  +   E+   M++     ++  YN+LI    +   I   E LF  +  + L
Sbjct: 73  MLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNL 132

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ VT+ + +  Y +       + + E M      P   T   L+S      +IE+   
Sbjct: 133 VPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARC 192

Query: 236 LVRTM 240
           ++  +
Sbjct: 193 MLNEI 197


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 88/175 (50%), Gaps = 1/175 (0%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A+ +  EM ++G+ P + ++  ++    K+GN+ +   ++ +   +GL  DT    ++++
Sbjct: 918  ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 977

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             Y + G+ +K +E+L  M        I T+N+L+N +   G +E  E L   + AK + P
Sbjct: 978  AYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 1037

Query: 178  DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
            +  T+ S +  Y  +   +    I+++M   G  PDG T + L+   C + +  E
Sbjct: 1038 NATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKE 1092



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 82/167 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +   M+  G TP + S+  ++  Y + G + K   +I  M + GLKP++++  S++
Sbjct: 707 EAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSII 766

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            L  R+ +  + EE  + M +     D   Y  LI+ + + G I      F  + ++ + 
Sbjct: 767 GLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDIT 826

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PDV+T+T+ ++ + +        ++F EM   G  PD  T   LI+ 
Sbjct: 827 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELING 873



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 30  SHFMLINFLLLQHTPNLFVFIFSI----YFSDAHAVF---EEMKRLGITPTMKSHMLLLT 82
           +H +L+   L  +TP++  +   +     F +   V+   E MKR G+ P    +  ++ 
Sbjct: 708 AHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIG 767

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
              +   +A+ E   ++M + G+ PDT V  ++++ + + G      +    M       
Sbjct: 768 LLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITP 827

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+ TY  +I+ + + G + +   LF  +  K L+PD VT+T  +  Y +    +    + 
Sbjct: 828 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 887

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             MI AGC P+  T   LI     E  ++    L+  M K
Sbjct: 888 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 927



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 88/187 (47%)

Query: 54   YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            +  DA  V   M + G +P + ++  L+    K G++     ++++M K GL+P+ F  N
Sbjct: 879  HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 938

Query: 114  SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            S++N   + G  E+  +++   E     AD  TY  L++ Y + G ++K + + + +  K
Sbjct: 939  SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 998

Query: 174  RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             L+P +VT+   +  +    +     ++   M+  G  P+  T   L+      + ++  
Sbjct: 999  GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 1058

Query: 234  TTLVRTM 240
            T + + M
Sbjct: 1059 TAIYKDM 1065



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 90/209 (43%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +A  +F EM   G+ P   +   L+  Y K G++     V N M ++G  P+     +++
Sbjct: 847  EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLI 906

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +   + G  +   E+L  M K     +I TYN ++N   + G IE+   L     A  L 
Sbjct: 907  DGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN 966

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             D VT+T+ + AY +     +  EI +EM+  G  P   T  VL++       +E    L
Sbjct: 967  ADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKL 1026

Query: 237  VRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            +  M           FN   ++   R+NL
Sbjct: 1027 LNWMLAKGIAPNATTFNSLVKQYCIRNNL 1055



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 15/246 (6%)

Query: 10  DLCVAQRAPHS-WNFNYLPYPSHFMLINFLLLQHT-------PNLFVFIFSIY-----FS 56
           DL VAQ    S W    L     F+   F LL +T       P +F   F +        
Sbjct: 577 DLKVAQSLISSFWERPKLNVTDSFVQF-FDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLR 635

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSM 115
           +A  VFE+M   G+  ++ S  + LT  SK     A    V  +  + G+  +    N +
Sbjct: 636 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 695

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +LG+ ++   +L  ME   Y  D+ +Y+ ++N Y R G ++K+  L + +  K L
Sbjct: 696 IHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGL 755

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+   + S +    R        E F EMI  G  PD      LI        I   + 
Sbjct: 756 KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 815

Query: 236 LVRTMH 241
               MH
Sbjct: 816 FFYEMH 821



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 76/183 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A   F EM R GI P    +  L+  + K G++        +MH   + PD     +
Sbjct: 775 LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 834

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + ++G   +  ++   M       D  T+  LIN Y + G ++    +   +    
Sbjct: 835 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 894

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+VVT+T+ +    ++       E+  EM   G  P+  T   +++       IE+  
Sbjct: 895 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 954

Query: 235 TLV 237
            LV
Sbjct: 955 KLV 957



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF E   +G+   + S+ +++    + G + +   ++  M   G  PD    ++++N
Sbjct: 673 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 732

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G+ +K+ +++  M++     +   Y  +I +  R   + + E  F  +  + + P
Sbjct: 733 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 792

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
           D V +T+ +  + ++   R   + F EM      PD  T   +IS  C   D +E
Sbjct: 793 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 847



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/201 (19%), Positives = 88/201 (43%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            +A  +  E +  G+     ++  L+ AY K+G + K + ++ +M   GL+P     N ++
Sbjct: 952  EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLM 1011

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            N +   G  E  E++L  M     A + +T+N L+  Y     ++    +++ + ++ + 
Sbjct: 1012 NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVG 1071

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            PD  T+ + +  + + +  +    +F+EM   G      T  VLI       +  +   +
Sbjct: 1072 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 1131

Query: 237  VRTMHKDMKTALPIYFNLYGE 257
               M ++   A    F+ + +
Sbjct: 1132 FDQMRREGLAADKEIFDFFSD 1152


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M R    P + ++  L+   SK+G V     V++ M K G+ P+    + +++
Sbjct: 133 AKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLID 192

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + ++ + ++  ++L  M     A  + TYNIL+N   R   +E    LF+ +  +R  P
Sbjct: 193 GFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHP 252

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            VVT+ + L A    K       ++ EMI  GC PD  T   L    +   ++ +   L+
Sbjct: 253 TVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELM 312

Query: 238 RTM 240
             M
Sbjct: 313 EKM 315



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 81/174 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F+EM   G  PT  S+  L+  + K  ++   + V ++M +S   P+     ++++
Sbjct: 98  AYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLID 157

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ +   EVL  M K     +++TY+ LI+ + +   +++   L + +  + + P
Sbjct: 158 GLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAP 217

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            VVT+   L +  R        ++F  M    C+P   T   L+ A     Q++
Sbjct: 218 TVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 271



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE---VLTAMEKGSYAA 142
           KT  +      + +M   G+KPD F+ N +L+    L Q EK+EE   +   M K     
Sbjct: 21  KTKRIDDALATVEEMATRGIKPDAFIYNFVLS---GLCQEEKVEEARLLFEKMVKQRINP 77

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           ++ TYN LIN   +   IE    LF+ +  K   P  V++ + +  + +KK      ++F
Sbjct: 78  NVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVF 137

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           ++M+ + C P+  T   LI   S   +++    ++  M K
Sbjct: 138 DKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK 177



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 78/186 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA A  EEM   GI P    +  +L+   +   V +   +  +M K  + P+    N+
Sbjct: 25  IDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNT 84

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   +  + E   E+   M    Y     +YN LI+ + +   +   + +F  +    
Sbjct: 85  LINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSN 144

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+VVT+T+ +   S+    +   E+ + M+  G  P+  T   LI       ++++  
Sbjct: 145 CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAH 204

Query: 235 TLVRTM 240
            L+  M
Sbjct: 205 KLLEQM 210



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/204 (18%), Positives = 88/204 (43%), Gaps = 7/204 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ F++ F +          +A  +FE+M +  I P + ++  L+    K   +     +
Sbjct: 42  PDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYEL 101

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M   G  P     N++++ + +       ++V   M + +   ++ TY  LI+   +
Sbjct: 102 FKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSK 161

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G ++    +   +  K + P+V T++  +  + + +      ++ E+M+  G  P   T
Sbjct: 162 SGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVT 221

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
             +L+++    D++E    L R M
Sbjct: 222 YNILLNSLCRADKLEDAFKLFRGM 245


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH +F  M          +++ +L +  + G   +   +++++H+ G+  DT + N++
Sbjct: 423 SEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTV 482

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+  G+L Q   + ++   M++     DI TYNILI+  GR G +++   +F+ L +   
Sbjct: 483 LSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDC 542

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPD++++ S +    +          F EM D G  PD  T   LI      D++E   +
Sbjct: 543 KPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARS 602

Query: 236 LVRTM 240
           L   M
Sbjct: 603 LFDRM 607



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 80/166 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  ++   GI+     +  +L+   K   V+    +  +M + G  PD F  N ++
Sbjct: 459 EAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILI 518

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +  GR+G+ ++  EV   +E      DI +YN LIN  G+ G +++    F  +  K L 
Sbjct: 519 SSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLN 578

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           PDVVT+++ +  + +         +F+ MI  GC P+  T  +L+ 
Sbjct: 579 PDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLD 624



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 79/165 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S  H ++E+MK+ G  P + ++ +L+++  + G V +   V  ++  S  KPD    NS+
Sbjct: 493 SHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSL 552

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  G+ G  ++       M+      D+ TY+ LI  +G+   +E    LF  +  +  
Sbjct: 553 INCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGC 612

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            P++VT+   L    R       ++++ ++ + G  PD  T  +L
Sbjct: 613 CPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAIL 657



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 98/210 (46%), Gaps = 1/210 (0%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           T N+ + IFS    D       +K+  +     ++  LL A+ ++ +  +   V  +M  
Sbjct: 204 TVNILIKIFS-SNEDLELCTGLIKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWS 262

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
           +G + D F  N +L+   +  Q ++  +V   M+      D  TY I+I + G+ G  E+
Sbjct: 263 NGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEE 322

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              LF+ +  K   P+++ + + + A S+  +  + + +F  MI   C P+  T  ++++
Sbjct: 323 SLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILN 382

Query: 223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
              +E Q+ ++  ++   +K +  ++  Y 
Sbjct: 383 VLVAEGQLGRLDEVLEVSNKFINKSIYAYL 412



 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 28/245 (11%)

Query: 38  LLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           +LL   P+  +      FSD  + F+ +  + +TP   S +L         ++   +  +
Sbjct: 97  ILLHRNPHSSLITIDDRFSDLSSYFQSLS-VSLTPAEASEIL--------KSLNSPDLAL 147

Query: 98  NQMHK-SGLKP----DTFV---INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
              H+ S L P    D F    I  ML+      + +++ E+L+ M++      IST NI
Sbjct: 148 QFFHRCSSLCPKFRHDAFTYSRILLMLSHSSSSKRIDQVREILSQMDRDQIRGTISTVNI 207

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           LI I+     +E   GL +      L+ +  T+   L A+ R +   R   ++ EM   G
Sbjct: 208 LIKIFSSNEDLELCTGLIKKWD---LRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSNG 264

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP------IYFNLYGEKGVARS 263
              D     +L+ A + ++Q+++   + + M   +K   P      I   + G+ G A  
Sbjct: 265 YQLDIFAYNMLLDALAKDEQLDRSYKVFKDMK--LKHCNPDEYTYTIMIRMTGKMGRAEE 322

Query: 264 NLGQY 268
           +L  +
Sbjct: 323 SLALF 327


>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 562

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 2/194 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A AVFEEM   GI PT K++ +LL A+S +G V + + V   M +    PD     +M
Sbjct: 328 EEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTM 387

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ Y      E  E+    + +  +  ++ TY  LI  Y +   +E +   ++ +  + +
Sbjct: 388 LSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLMRGI 447

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           K +    T+ + AY +   +   +  F+EM   G  PD     VL+S   ++++ E+   
Sbjct: 448 KANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAKNVLLSLAKTDEEREEANE 507

Query: 236 LVRTMHKDMKTALP 249
           LV  +H    ++LP
Sbjct: 508 LV--VHFSENSSLP 519



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 13/212 (6%)

Query: 55  FSDAHAVFEEMKRLGI---TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           +  A   F +M  LGI   T T  S M   T Y +  N+       +QM ++ L+PD   
Sbjct: 260 YEKARKTFAQMAELGIQQTTVTYNSLMSFETNYKEVSNI------YDQMQRADLRPDVVS 313

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
              +++ YG+  + E+   V   M           YNIL++ +   G +E+ + +F+S+ 
Sbjct: 314 YALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMR 373

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             R  PD+ ++T+ L+AY          + F+ +I  G  P+  T   LI   +  + +E
Sbjct: 374 RDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKINDLE 433

Query: 232 QVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
            V      M     K  +T L    + YG+ G
Sbjct: 434 MVMKKYEEMLMRGIKANQTILTTIMDAYGKSG 465



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 7/188 (3%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+TAY K G+    E V+  M+K+G  P+     +++  YG+ G++   E +   M+K 
Sbjct: 141 MLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKW 200

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR---LKPDVVTWTSRLAAYSRKKLY 195
                  TY I++  + +G    + E LF +L       LKPD   +   +  + +   Y
Sbjct: 201 GPEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMIYMHKKAGSY 260

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIYFNL 254
            +  + F +M + G      T   L+S    E   ++V+ +   M + D++  +  Y  L
Sbjct: 261 EKARKTFAQMAELGIQQTTVTYNSLMSF---ETNYKEVSNIYDQMQRADLRPDVVSYALL 317

Query: 255 YGEKGVAR 262
               G AR
Sbjct: 318 VSAYGKAR 325



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 51/115 (44%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  L  +I +     A   F+ + + G  P + ++  L+  Y+K  ++        
Sbjct: 381 LCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKINDLEMVMKKYE 440

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M   G+K +  ++ ++++ YG+ G F+        ME      D    N+L+++
Sbjct: 441 EMLMRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAKNVLLSL 495


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 90/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F +MK  G +P++ ++ +L+  +S+  N A    ++ +M   GL P       +++
Sbjct: 345 ASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMD 404

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R    EK  ++ ++MEK    ADI  Y +LI+     G +++   LF+SL    LKP
Sbjct: 405 ALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKP 464

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V + + +  Y ++    R L + +EM + G  P+  +    I     +++  +   L+
Sbjct: 465 NDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLL 524

Query: 238 RTM 240
           + M
Sbjct: 525 KDM 527



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 87/188 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +F+EM+  G+   + ++  L+    +   V + E ++ +M + GL P+    N+
Sbjct: 272 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 331

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  +G  +K   +   M+    +  ++TYNILI  +        +  + + + A+ 
Sbjct: 332 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 391

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P  VT+T  + A  R     +  +I+  M  AG   D     VLI        +++ +
Sbjct: 392 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 451

Query: 235 TLVRTMHK 242
            L +++ +
Sbjct: 452 KLFKSLDE 459



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 84/186 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   ++E+MK  GI P + ++  ++      G +     + ++M + G+  +    N+++
Sbjct: 239 DGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLI 298

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               +  +  + E ++  M++   + ++ +YN LI+ Y   G ++K   LF  + +    
Sbjct: 299 GGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQS 358

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P + T+   +A +S  K      ++  EM   G  P   T  +L+ A    D IE+   +
Sbjct: 359 PSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQI 418

Query: 237 VRTMHK 242
             +M K
Sbjct: 419 YSSMEK 424



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 1/198 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L + I S +F  A  VF E K   +   + S  +++    + G + K   V+ QM + GL
Sbjct: 124 LILLIKSNFFEKAWRVFNETKG-NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGL 182

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P+  V  ++++   + G  E+ +++   M +    A+  TY +LIN + + G  +    
Sbjct: 183 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 242

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L++ +    + P+V T+ S +             E+F+EM + G   +  T   LI    
Sbjct: 243 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 302

Query: 226 SEDQIEQVTTLVRTMHKD 243
            E ++ +   L+  M +D
Sbjct: 303 QERRVLEAERLMCRMKRD 320



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 77/181 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F +M  L +     ++ +L+  + K G       +  +M  +G+ P+ +  NSM+    
Sbjct: 208 LFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCC 267

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+     E+   M +   A ++ TYN LI    +   + + E L   +    L P+++
Sbjct: 268 NDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLI 327

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + +  Y       +   +F +M  +G  P   T  +LI+  S       VT +VR M
Sbjct: 328 SYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREM 387

Query: 241 H 241
            
Sbjct: 388 E 388



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/149 (18%), Positives = 73/149 (48%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  G++P+  ++ +L+ A  ++ N+ K   + + M K+GL  D ++   +++    +G
Sbjct: 386 EMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVG 445

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             ++  ++  ++++     +   YN +I  Y + G   +   L + +    + P+V ++ 
Sbjct: 446 DMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYN 505

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           S +    + + +     + ++MI+ G  P
Sbjct: 506 STIXILCKDEKWTEAEVLLKDMIELGLKP 534



 Score = 40.8 bits (94), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/126 (19%), Positives = 56/126 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++  M++ G+   +  + +L+      G++ +   +   + +  LKP+  + N+M+ 
Sbjct: 415 AFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIY 474

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G   +   +L  M +     ++++YN  I I  +     + E L + +    LKP
Sbjct: 475 GYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKP 534

Query: 178 DVVTWT 183
            +  W 
Sbjct: 535 SISIWN 540



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
           NQM   GL P +   N++L L  +   FEK   V     KG+   D+ ++ I+I      
Sbjct: 106 NQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIKGCCEV 164

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G+++K   +   +    L P+VV +T+ +    +     R  ++F +M +     +  T 
Sbjct: 165 GYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTY 224

Query: 218 KVLISA 223
            VLI+ 
Sbjct: 225 TVLING 230


>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
 gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
          Length = 492

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F    ++  +M R GI P   ++  L+ AY K     + E  + +M     KPD + +NS
Sbjct: 228 FEKVKSLLTDMARAGIRPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNS 287

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L  +G  GQ E ME      +      +I TYNIL++ YG+    EKM  + + +    
Sbjct: 288 TLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYY 347

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
               +VT+   + A+ R     +   IF  M      P+  T   ++ A     +++++ 
Sbjct: 348 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIK 407

Query: 235 TLVRTMHKDMKTALPIYFNL----YGEKG 259
           T++R +     T   ++FN     YG  G
Sbjct: 408 TVLRIVENSDITLDIVFFNCLVDAYGRVG 436



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 27  PYPSHFMLINFLLLQHTPNL--FVFIFSIY-----FSDAHAVFEEMKRL-GITPTMKSHM 78
           P  +H +    +     PNL  +  + S Y     F +A  + + MK   G  P +K++ 
Sbjct: 157 PEKAHELFQAMIDEGCAPNLESYTALVSAYSRSGRFHEAFNLLDRMKDTPGCQPDVKTYS 216

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ +     +  K + ++  M ++G++P+T   N++++ YG+  +F +ME  L  M   
Sbjct: 217 ILIKSCLHAYDFEKVKSLLTDMARAGIRPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQ 276

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +   DI T N  +  +G  G IE ME  ++   A  + P++ T+   L +Y + K+Y + 
Sbjct: 277 NCKPDIWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKM 336

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             + E M          T  V+I A      +EQ+  + R M  +
Sbjct: 337 GAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSE 381



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 67/122 (54%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AV E M++   + T+ ++ +++ A+ + G++ + E +   M    +KP+   + S++  Y
Sbjct: 338 AVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAY 397

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR G+ +K++ VL  +E      DI  +N L++ YGR G + +M  +   +   R KPD 
Sbjct: 398 GRAGEVKKIKTVLRIVENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDK 457

Query: 180 VT 181
           VT
Sbjct: 458 VT 459



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 74/163 (45%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            + +E+ +  GI P +K++ +LL +Y K     K   V+  M K          N +++ 
Sbjct: 302 ESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDA 361

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           +GR G  E+ME +   M+      +  T   ++  YGR G ++K++ + + +    +  D
Sbjct: 362 FGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTVLRIVENSDITLD 421

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +V +   + AY R        +I + M +  C PD  T   +I
Sbjct: 422 IVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCATMI 464



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 2/188 (1%)

Query: 50  IFSIYFSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           + ++ +  A  VFE M+ ++   P +  ++ L+T   K     K   +   M   G  P+
Sbjct: 116 VAALRWDSALKVFELMRDQVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPN 175

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                ++++ Y R G+F +   +L  M +      D+ TY+ILI         EK++ L 
Sbjct: 176 LESYTALVSAYSRSGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKVKSLL 235

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             +    ++P+ VT+ + + AY + + +        +M+   C PD  T    + A  S 
Sbjct: 236 TDMARAGIRPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNSTLRAFGSS 295

Query: 228 DQIEQVTT 235
            QIE + +
Sbjct: 296 GQIETMES 303



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y   I  Y  LI + G+    EK   LFQ++  +   P++ ++T+ ++AYSR   +    
Sbjct: 137 YRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSAYSRSGRFHEAF 196

Query: 200 EIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + + M D  GC PD  T  +LI +C      E+V +L+  M +
Sbjct: 197 NLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKVKSLLTDMAR 240


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S    + +EM      P + ++ +L+ A  K G + +  GV+  M K G+KP+    N+
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNA 445

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ Y         +++   M K     DI  YN+LIN Y +   +++   LF+ +  K 
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKN 505

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD+ ++ S +             E+ +EM D+G  PD  T  +L+ A       ++  
Sbjct: 506 LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565

Query: 235 TLVRTM 240
           +L R +
Sbjct: 566 SLFRQI 571



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 91/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM++  + P +  +  L+    K G V+   G+ +Q+ + G+  D    NS+++
Sbjct: 179 ALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLID 238

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               +G+++++ ++LT M + +   D  T+NILI+   + G I + +G+   +  +  KP
Sbjct: 239 GCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKP 298

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + +  Y  ++      E+F  M+  G  PD     VLI        +++   L 
Sbjct: 299 DIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLF 358

Query: 238 RTM 240
           + +
Sbjct: 359 KEL 361



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M + G+ P + ++ +L+  Y KT  V +   +  ++    L P     NS++
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLI 377

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +     G+   ++++L  M   +   D+ TYNILI+   + G I +  G+   +  K +K
Sbjct: 378 DGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVK 437

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++VT+ + +  Y  +       +IF  M+ +G  PD     VLI+     + +++   L
Sbjct: 438 PNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVL 497

Query: 237 VRTM-HKDMKTALPIYFNL 254
            + M HK++   +  Y +L
Sbjct: 498 FKEMRHKNLIPDIASYNSL 516



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 1/198 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +   +  +M R  + P   +  +L+ A  K G + + +GV+  M K G KPD    N+
Sbjct: 246 WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNA 305

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y       +  E+   M K     D+  YN+LI+ Y +   +++   LF+ L  K 
Sbjct: 306 LMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKN 365

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI-EQV 233
           L P + ++ S +             ++ +EM  +   PD  T  +LI A   E +I E +
Sbjct: 366 LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425

Query: 234 TTLVRTMHKDMKTALPIY 251
             LV  M K +K  +  Y
Sbjct: 426 GVLVMMMKKGVKPNIVTY 443



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 91/199 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+E+    + PT+ S+  L+     +G ++  + ++++MH S   PD    N +
Sbjct: 352 DEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNIL 411

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+  +   VL  M K     +I TYN +++ Y     +   + +F  +    L
Sbjct: 412 IDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGL 471

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PD++ +   +  Y + ++    + +F+EM      PD  +   LI    +  +I  V  
Sbjct: 472 EPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQE 531

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L+  M    ++   I +N+
Sbjct: 532 LLDEMCDSGQSPDVITYNI 550



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 2/172 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V   M + G+ P + ++  ++  Y    NV   + + N+M KSGL+PD    N ++
Sbjct: 423 EALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLI 482

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y +    ++   +   M   +   DI++YN LI+     G I  ++ L   +      
Sbjct: 483 NGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQS 542

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSSE 227
           PDV+T+   L A+ + + + + + +F ++++ G +PD  T   ++ + C  E
Sbjct: 543 PDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGE 593



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 87/201 (43%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + SDA  +  ++   GI     ++  L+      G   +   ++ +M +  + PD +  N
Sbjct: 210 FVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++   + G+  + + VL  M K     DI TYN L+  Y     + +   LF  +  +
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKR 329

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L+PDV+ +   +  Y + K+    + +F+E+ +    P   +   LI    +  +I  V
Sbjct: 330 GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHV 389

Query: 234 TTLVRTMHKDMKTALPIYFNL 254
             L+  MH   +    + +N+
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNI 410



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 91/197 (46%), Gaps = 1/197 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  M + G+ P + ++ +L+  Y KT  V +   +  +M    L PD    NS+++
Sbjct: 459 AKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLID 518

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               LG+   ++E+L  M     + D+ TYNIL++ + +    +K   LF+ +  + + P
Sbjct: 519 GLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWP 577

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T  + +    + +  +   +  + ++  GC P+  T  +LI+A   +    +   L+
Sbjct: 578 DFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLL 637

Query: 238 RTMHKDMKTALPIYFNL 254
             M  + +    I F +
Sbjct: 638 SKMEDNDRPPDAITFEI 654



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 88/190 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++  A ++F +++  GI+P++ +  +L+  Y    + A    ++  + KSG +P+    N
Sbjct: 70  HYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFN 129

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N +   G   K  +    +    Y  D  TY  LIN   + G I+    L Q +   
Sbjct: 130 TIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKS 189

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++P++V +++ +    +       L +  ++ + G   D  T   LI  C S  + ++V
Sbjct: 190 SVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEV 249

Query: 234 TTLVRTMHKD 243
           T L+  M ++
Sbjct: 250 TQLLTKMVRE 259



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 5/224 (2%)

Query: 47  FVFIFSIYFSDAHAVFE-----EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           F  + + YF  +H  F       + + G  P + +   ++  +   G + K       + 
Sbjct: 93  FTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLL 152

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
             G   D F   +++N   + GQ +    +L  MEK S   ++  Y+ LI+   + GF+ 
Sbjct: 153 AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVS 212

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
              GL   +  + +  D VT+ S +        ++   ++  +M+     PD  T  +LI
Sbjct: 213 DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILI 272

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            A   E +I +   ++  M K  +    + +N   E   +R N+
Sbjct: 273 DALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENV 316



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 65/154 (42%)

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
           NV       N+M +    P T V + +L    R+G +     + T ++    +  I+T+ 
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFT 94

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           ILIN Y           L  ++     +P++VT+ + +  +    +  + L+  + ++  
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           G   D  T   LI+  S   QI+    L++ M K
Sbjct: 155 GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEK 188



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 61/158 (38%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F  M R+   P       LL A  + G+      +  Q+   G+ P       +
Sbjct: 37  DDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTIL 96

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y           +L  + K  Y  ++ T+N +IN +   G I K     Q+L A+  
Sbjct: 97  INCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGY 156

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             D  T+ + +   S+    +  L + +EM  +   P+
Sbjct: 157 LFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPN 194



 Score = 44.3 bits (103), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 34/188 (18%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+EM+   + P + S+  L+      G +   + ++++M  SG  PD    N +
Sbjct: 492 DEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNIL 551

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSY----------------------------------A 141
           L+ + +   F+K   +   + +G +                                  +
Sbjct: 552 LDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCS 611

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            ++ TY ILIN   + G   +   L   +      PD +T+   +    ++    +  ++
Sbjct: 612 PNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKL 671

Query: 202 FEEMIDAG 209
            EEMI  G
Sbjct: 672 REEMIARG 679


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EM + G+     ++  L+  + +  +    + V  QM   G+ PD    N +L+   
Sbjct: 378 VFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLC 437

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G  E    V   M+K     DI TY  +I    + G +E    LF SL  K +KP+VV
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVV 497

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+T+ ++ + RK L      +F EM + G  P+ GT   LI A
Sbjct: 498 TYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRA 540



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 81/188 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A A+ ++M  +G  P   +   L+    +    ++   ++ +M   G +PD     +
Sbjct: 161 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 220

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G+ +    +L  MEKG   AD+  YN +I+   +   ++    LF  +  K 
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 280

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPDV T+   ++       +     +  +M++    PD      LI A   E ++ +  
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340

Query: 235 TLVRTMHK 242
            L   M K
Sbjct: 341 KLYDEMVK 348



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 80/202 (39%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
            +   DA  +F +M +    P++     LL+A +K         +  QM   G+  + + 
Sbjct: 53  DLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYT 112

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            +  +N + R  Q      +L  M K  Y   I T N L+N +  G  I +   L   + 
Sbjct: 113 YSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 172

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               +PD VT+T+ +    +       + + E M+  GC PD  T   +I+      + +
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 232

Query: 232 QVTTLVRTMHKDMKTALPIYFN 253
               L+  M K    A  + +N
Sbjct: 233 LALNLLNKMEKGKIEADVVIYN 254



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 1/179 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVIN 113
           +SDA  +  +M    I P +     L+ A+ K G + + E + ++M KS    PD    N
Sbjct: 301 WSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYN 360

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  + +  + E+  EV   M +     +  TY  LI+ + +    +  + +F+ + + 
Sbjct: 361 TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSD 420

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            + PD++T+   L            L +FE M       D  T   +I A     ++E 
Sbjct: 421 GVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVED 479


>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
          Length = 495

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 25/175 (14%)

Query: 42  HTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPT------MKSHML-------------- 79
           HT ++ +  F+    F     +  +M+R GI P       M+S ++              
Sbjct: 222 HTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITFVEMESTLIQMLGEDDCKPDSWT 281

Query: 80  ---LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
               L A+   G +   E    +   SG++P+    N +L+ YG+ G ++KM  V+  M+
Sbjct: 282 MNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQ 341

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           K  Y+  I TYN++I+ +GR G +++ME LF+ + ++R+ P  VT  S + AY R
Sbjct: 342 KYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGR 396



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 4/180 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +E+ +  GI P +++  +LL +Y K+GN  K   V+  M K          N +++ +GR
Sbjct: 302 YEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGR 361

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++ME +   M+         T   L+  YGR    +K+ G+ + +    ++ D+V 
Sbjct: 362 AGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVF 421

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   + AY R + +     + E M   G  PD  T + ++ A     +I  +TT V+ +H
Sbjct: 422 FNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAY----RISGMTTHVKELH 477



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 69/130 (53%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AV E M++   + T+ ++ +++ A+ + G++ + E +   M    + P    + S++  Y
Sbjct: 335 AVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAY 394

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR  + +K+  VL  +E      D+  +N L++ YGR     +M+G+ + +  K  KPD 
Sbjct: 395 GRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDK 454

Query: 180 VTWTSRLAAY 189
           +T+ + + AY
Sbjct: 455 ITYRTMVKAY 464



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/281 (19%), Positives = 109/281 (38%), Gaps = 68/281 (24%)

Query: 40  LQHTPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN--- 89
           L + PN+ +++  I           AH +F+EM   G     + +  L++AYS++G    
Sbjct: 144 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 203

Query: 90  ---------------------------------VAKCEGVINQMHKSGL----------- 105
                                              K + +++ M + G+           
Sbjct: 204 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITFVEME 263

Query: 106 ------------KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
                       KPD++ +NS L  +G  GQ E ME      +      +I T+NIL++ 
Sbjct: 264 STLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDS 323

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+ G  +KM  + + +        +VT+   + A+ R    ++   +F  M     +P 
Sbjct: 324 YGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPS 383

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFN 253
             T   L+ A     + +++  ++R + + D++  L ++FN
Sbjct: 384 CVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDL-VFFN 423



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  M+   I P+  +   L+ AY +     K  GV+  +  S ++ D    N +++ YG
Sbjct: 371 LFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYG 430

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF---IEKMEGLFQSLPAKRL-- 175
           R+ +F +M+ VL  MEK  +  D  TY  ++  Y   G    ++++ G+ +S+   ++  
Sbjct: 431 RMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVGEAQVVV 490

Query: 176 -KPD 178
            KPD
Sbjct: 491 KKPD 494



 Score = 40.8 bits (94), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 79/184 (42%), Gaps = 14/184 (7%)

Query: 50  IFSIYFSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           I ++ +  A  VFE ++ +L   P +  ++ L+    K     K   +  +M   G   +
Sbjct: 125 ITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVN 184

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLF 167
             V  ++++ Y R G+F+    +L  M+   +   D+ TY+ILI  + +    +K++ L 
Sbjct: 185 HEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLL 244

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             +  + ++P+ +T+    +             + + + +  C PD  T    + A    
Sbjct: 245 SDMRRQGIRPNTITFVEMEST------------LIQMLGEDDCKPDSWTMNSTLRAFGGN 292

Query: 228 DQIE 231
            QIE
Sbjct: 293 GQIE 296


>gi|194705728|gb|ACF86948.1| unknown [Zea mays]
 gi|414591270|tpg|DAA41841.1| TPA: fertility restorer [Zea mays]
          Length = 563

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG-RLGQFEK 127
           G+ P++  +  LL A  + G   +   V + M  +G+ P+    N ++ LY  R   F  
Sbjct: 90  GVPPSVLCYNTLLNALVEAGRAVEARSVFDGMLAAGVAPNASSFNILVKLYAWRTADFHL 149

Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
             + + AM +     D+ T++ L+    R G +++  G+   +  +  +P V T+T  + 
Sbjct: 150 AYDQIHAMRRHGLLPDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIVQ 209

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQVTTLVRTMHKDM 244
            Y R+        +   M DAGC P+  T  VLI A   +    ++EQV   + T   ++
Sbjct: 210 GYCRQGQIEEATNLIGFMEDAGCPPNAVTYNVLIRALCDDARFAEVEQVLAEIETKGHEL 269

Query: 245 KTAL-PIYFNLYGEKGVARSNLGQY 268
            T    IY +  G+KG+A+  L Q+
Sbjct: 270 STVTYNIYMDALGKKGMAKEALKQF 294



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 96/211 (45%), Gaps = 4/211 (1%)

Query: 45  NLFVFIFSIYFSDAHAVFEE---MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           N+ V +++   +D H  +++   M+R G+ P + +   L+T   + G + +  GV++ M 
Sbjct: 134 NILVKLYAWRTADFHLAYDQIHAMRRHGLLPDVGTFSTLVTGLCRAGKLDEAWGVLDWML 193

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G +P       ++  Y R GQ E+   ++  ME      +  TYN+LI          
Sbjct: 194 QEGCRPMVHTYTPIVQGYCRQGQIEEATNLIGFMEDAGCPPNAVTYNVLIRALCDDARFA 253

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           ++E +   +  K  +   VT+   + A  +K + +  L+ FE +   G +P   T  +++
Sbjct: 254 EVEQVLAEIETKGHELSTVTYNIYMDALGKKGMAKEALKQFEALQCKGLHPTAFTLSIIL 313

Query: 222 SA-CSSEDQIEQVTTLVRTMHKDMKTALPIY 251
           +  C +    + ++ L R+   +   A+  Y
Sbjct: 314 NCLCCTSRFSQAISILERSTDLNFCAAVVAY 344


>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g19290-like [Cucumis
           sativus]
          Length = 885

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA+ VF +M R G  P    +  L+  + K G + +   ++ +M+K GL PD F +N +
Sbjct: 589 TDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMI 648

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G+ +   E    M +   + DI TYN LI+ Y +   +   + L   +     
Sbjct: 649 ICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGW 708

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +PD+ T+  R+  Y   +   R + I EE+I  G  P+  T   +I+A
Sbjct: 709 EPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINA 756



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 82/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +++ EMK  G+ P   +    +     +G +     V + M + G  P+ FV NS++ 
Sbjct: 556 AESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIG 615

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + ++G+  +  +++  M K     DI T N++I    + G ++     F  +    L P
Sbjct: 616 GFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSP 675

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + +  Y +        ++  +M D+G  PD  T  + I    +  +I +   ++
Sbjct: 676 DIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMIL 735

Query: 238 RTM 240
             +
Sbjct: 736 EEL 738



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 2/200 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  + E +   GI P++ +   ++ AY   G   +       M K GL P +   +S
Sbjct: 448 YDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSS 507

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    R G  ++    L  M    +      + +L++ Y R G +   E L+  +  + 
Sbjct: 508 LLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRG 567

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD V + + +       L     ++F +M+  G  P+      LI       ++ +  
Sbjct: 568 VFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEAL 627

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            LVR M+K  +  LP  F +
Sbjct: 628 KLVREMNK--RGLLPDIFTV 645



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 77/175 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+E++ +G++     + ++++ Y K  ++++   +  +M    + PD    N+++ 
Sbjct: 346 ARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVA 405

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G+ E    +L  +       D S  ++ +      G  ++   L ++L  K + P
Sbjct: 406 GHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPP 465

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            VV + S +AAY    L  R    +  M+  G  P   T   L+ +   +  +++
Sbjct: 466 SVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDE 520



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 7/226 (3%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           Y S F +++ L+         F+ S    +A  +  +M+ +G+TP   +  +L     + 
Sbjct: 183 YESDFSVLDTLMQ-------AFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRA 235

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G+      +   + + G  P+ F  N ++  + R G     E +L  M K     D+ +Y
Sbjct: 236 GDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSY 295

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           NI+IN     G       L   +     KP + T+ + + A+ ++       + F+E+ D
Sbjct: 296 NIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIED 355

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            G   +     ++IS       I Q   L   M         I FN
Sbjct: 356 MGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFN 401



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 1/175 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A     +M   G   T  +  +LL  Y + G V   E + N+M   G+ PD     +
Sbjct: 518 LDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAA 577

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +N     G      +V + M +  +  +   YN LI  + + G + +   L + +  + 
Sbjct: 578 FINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRG 637

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
           L PD+ T    +    ++   +  +E F +M   G  PD  T   LI   C + D
Sbjct: 638 LLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFD 692



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 7/205 (3%)

Query: 43  TPN----LFVFIFSIYFSDAHAV---FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN      +F   I   D  AV   F ++ R G  P   +  LL+  + + G     E 
Sbjct: 219 TPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEA 278

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +++ M K   +PD +  N ++N     GQ      +L  M +      I+T+  +I+ + 
Sbjct: 279 LLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFC 338

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +E     F  +    L  + + +   ++ Y + +   +   +FEEM      PDG 
Sbjct: 339 KEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGI 398

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   L++      + E    L+R +
Sbjct: 399 TFNTLVAGHYRYGKEEDGNRLLRDL 423



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 74/165 (44%), Gaps = 8/165 (4%)

Query: 27  PYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           P P++F   N L+L+     +  I         A+   M +    P + S+ +++ A   
Sbjct: 253 PCPNNFTF-NLLILEFCRKGWTRI-------GEALLHVMGKFRCEPDVYSYNIVINANCL 304

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
            G  +    ++N M ++G KP      ++++ + + G  E   +    +E    + +   
Sbjct: 305 KGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIV 364

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           YNI+I+ Y +   I +   LF+ +  K + PD +T+ + +A + R
Sbjct: 365 YNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYR 409



 Score = 40.0 bits (92), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 64/154 (41%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A+ +FEEM+   I P   +   L+  + + G       ++  +  SGL  D+ + +  
Sbjct: 379 SQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVT 438

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +      G++++  ++L  + +      +  +N +I  YG  G  E+    +  +    L
Sbjct: 439 VAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGL 498

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P   T +S L +  RK           +MID G
Sbjct: 499 TPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKG 532


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+AH +F  M          +++ +L +  + G   +   +++++H+ G+  DT + N++
Sbjct: 428 SEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTV 487

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+  G+L Q   + ++   M++     DI TYNILI+  GR G +++   +F+ L +   
Sbjct: 488 LSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDC 547

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPD++++ S +    +          F EM D G  PD  T   LI      D++E   +
Sbjct: 548 KPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARS 607

Query: 236 LVRTM 240
           L   M
Sbjct: 608 LFDRM 612



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  ++   GI+     +  +L+   K   V+    +  +M + G  PD F  N ++
Sbjct: 464 EAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILI 523

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +  GR+G+ ++  EV   +E      DI +YN LIN  G+ G +++    F  +  K L 
Sbjct: 524 SSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLN 583

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           PDVVT+++ +  + +         +F+ MI  GC P+  T  +L+
Sbjct: 584 PDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILL 628



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 79/165 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S  H ++E+MK+ G  P + ++ +L+++  + G V +   V  ++  S  KPD    NS+
Sbjct: 498 SHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSL 557

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  G+ G  ++       M+      D+ TY+ LI  +G+   +E    LF  +  +  
Sbjct: 558 INCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGC 617

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            P++VT+   L    R       ++++ ++ + G  PD  T  +L
Sbjct: 618 CPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAIL 662



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 97/210 (46%), Gaps = 1/210 (0%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           T N+ + IFS    D       +K+  +     ++  LL A+ ++ +  +   V  +M  
Sbjct: 209 TVNILIKIFS-SNEDLELCTGLIKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWS 267

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G + D F  N +L+   +  Q ++  +V   M+      D  TY I+I + G+ G  E+
Sbjct: 268 KGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEE 327

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              LF+ +  K   P+++ + + + A S+  +  + + +F  MI   C P+  T  ++++
Sbjct: 328 SLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILN 387

Query: 223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
              +E Q+ ++  ++   +K +  ++  Y 
Sbjct: 388 VLVAEGQLGRLDEVLEVSNKFINKSIYAYL 417



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 28/245 (11%)

Query: 38  LLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           +LL   P+  +      FSD  + F+ +  + +TP   S +L         ++   +  +
Sbjct: 102 MLLHRNPHSSLITIDDRFSDLSSYFQSLS-VSLTPAEASEIL--------KSLNSPDLAL 152

Query: 98  NQMHK-SGLKP----DTFV---INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
              H+ S L P    D F    I  ML+      + +++ E+L+ M++      IST NI
Sbjct: 153 QFFHRCSSLCPKFRHDAFTYSRILLMLSHSSSSKRIDQVREILSQMDRDQIRGTISTVNI 212

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           LI I+     +E   GL +      L+ +  T+   L A+ R +   R   ++ EM   G
Sbjct: 213 LIKIFSSNEDLELCTGLIKKWD---LRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSKG 269

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP------IYFNLYGEKGVARS 263
              D     +L+ A + ++Q+++   + + M   +K   P      I   + G+ G A  
Sbjct: 270 YQLDIFAYNMLLDALAKDEQLDRSYKVFKDMK--LKHCNPDEYTYTIMIRMTGKMGRAEE 327

Query: 264 NLGQY 268
           +L  +
Sbjct: 328 SLALF 332


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 38/216 (17%)

Query: 44  PNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+ VF       +   Y   A   +  M R  + PT  S   L+ A +   + A  E V
Sbjct: 39  PNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAV 98

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQ-------FEKMEE---------VLTAMEKGSY 140
              + K G     FV  +++  Y   G        F+ M E         +   +  G  
Sbjct: 99  HGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDM 158

Query: 141 AA-----------DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           A+           +++T+N +I+ YG+ G  E  E LF  +PA+    D+++WT+ +  Y
Sbjct: 159 ASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPAR----DIISWTTMMNCY 214

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           SR K Y+  + +F ++ID G  PD  T   +ISAC+
Sbjct: 215 SRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACA 250



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 79/182 (43%), Gaps = 5/182 (2%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+F ++   G+ P   +   +++A +  G +A  + V   +   G   D ++ +S++++Y
Sbjct: 225 ALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMY 284

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G  +    V   ++      ++  +N +I+     G++E+   +F  +  KR++P+ 
Sbjct: 285 AKCGSIDMALLVFYKLQ----TKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNA 340

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSEDQIEQVTTLVR 238
           VT+ S L A +           F  M+   C  P       ++   S    +E    ++R
Sbjct: 341 VTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIR 400

Query: 239 TM 240
            M
Sbjct: 401 NM 402



 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 4/164 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++  YS+     +   + + +   G+ PD   + ++++    LG     +EV   +    
Sbjct: 210 MMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQG 269

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +  D+   + LI++Y + G I+    +F  L  K L      W   +   +        L
Sbjct: 270 FDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNL----FCWNCIIDGLATHGYVEEAL 325

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +F EM      P+  T   +++AC+    IE+      +M +D
Sbjct: 326 RMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQD 369


>gi|218191860|gb|EEC74287.1| hypothetical protein OsI_09537 [Oryza sativa Indica Group]
          Length = 689

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+ M+   + P   +   LLTA +K+   A    V +QM ++G+  +T V N+ML
Sbjct: 220 DALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAML 279

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++  + G     E ++T M+      D  ++N +I +Y R G   +   + + +  + +K
Sbjct: 280 HVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVK 339

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DVVTW S +    +++  +   ++  EM  AG  PD  T   L+        +E+   L
Sbjct: 340 ADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKL 399



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 2/184 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M R G+      +  +L    K G+ A  E ++ +M  +G+  D F  N+++ 
Sbjct: 256 ARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIA 315

Query: 118 LYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           LY R G Q+E M  V   ME     AD+ T+N LI+   +   +++   L + +    + 
Sbjct: 316 LYCRKGMQYEAM-CVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVA 374

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+T+ +  Y R       +++  EM   G  P   T   ++     + ++++V  L
Sbjct: 375 PDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVL 434

Query: 237 VRTM 240
           +  M
Sbjct: 435 LNEM 438



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 84/185 (45%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V E M+  G+   + +   L+    K   V +   ++ +M  +G+ PD     +++
Sbjct: 325 EAMCVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLV 384

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G  E+  ++   ME       ++TYN ++      G ++++  L   +  ++++
Sbjct: 385 DGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQ 444

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTT 235
            D VT  + + AY ++      L++   M+++G   D  T K L+   C +++  E    
Sbjct: 445 ADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEA 504

Query: 236 LVRTM 240
           L   M
Sbjct: 505 LFEMM 509


>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
 gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
          Length = 564

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 10/197 (5%)

Query: 40  LQHT---PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           +QH    P+ F +   I+        + A+ +F EM   G  P++ ++ +++  ++K G 
Sbjct: 163 MQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGK 222

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
                 + + + + G  PD      ++ + G  G  E  E+V   ME+  + AD   + +
Sbjct: 223 FDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGL 282

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +++++G+ G  EK    F  +    L+P+V    S L+AY R   Y     +   M   G
Sbjct: 283 MVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWG 342

Query: 210 CYPDGGTAKVLISACSS 226
            YP   T   L+S+C++
Sbjct: 343 LYPTLQTYTSLLSSCAA 359



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 93/205 (45%), Gaps = 4/205 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM R G  P + ++  L+  Y +  ++     + N M   G +PD     ++++L  
Sbjct: 89  LLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQA 148

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  +   ++   M+   +  D  TY+I+I+  G+ G +     LF  +  +   P +V
Sbjct: 149 KAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLV 208

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  +++   +   L+++ ++ + G  PD  T  +++    +   IE    +   M
Sbjct: 209 TYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEM 268

Query: 241 HKDMKTAL-PIY---FNLYGEKGVA 261
            +    A  PI+    +++G+ G A
Sbjct: 269 ERAGWVADNPIFGLMVDMWGKTGNA 293



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 59/120 (49%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           ++G K D     ++L + GR   F+ +  +L  M +     ++ TYN LI+ YGR   ++
Sbjct: 60  QAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLD 119

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
               LF  +     +PD VT+ + +   ++   +   ++++ +M  AG  PD  T  ++I
Sbjct: 120 SSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIII 179



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/157 (19%), Positives = 67/157 (42%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           K+ G    + ++  +L    +  +      ++++M + G +P+    N +++ YGR    
Sbjct: 59  KQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDL 118

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
           +   ++   M+      D  TY  LI++  + GF +    L++ +     +PD  T++  
Sbjct: 119 DSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSII 178

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +    +        ++F EM D G  P   T  ++I 
Sbjct: 179 IHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIID 215



 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 10/161 (6%)

Query: 90  VAKCEGVINQMHKSGLKPDTFV--INSMLNLYGRLGQFEKMEEV-------LTAMEKGSY 140
           VA+  G++NQ H  G +    +  +N+ LN Y      ++ +E        + A ++  +
Sbjct: 5   VARVCGILNQ-HGWGDETVRALAGLNANLNAYQVNEILKQQKEAGVAYNFFIWARKQAGF 63

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             D+ TY  ++ I GR    + +  L   +  +  +P+VVT+   +  Y R       L+
Sbjct: 64  KHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLK 123

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +F  M   GC PD  T   LI   +     +    L R M 
Sbjct: 124 LFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQ 164


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 84/181 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM + G+     ++  L+    + G+    + +  +M   G+ PD    + +L+   
Sbjct: 418 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 477

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ EK   V   ++K     +I TYNI+I    + G +E    LF SL  K +KP+V+
Sbjct: 478 KYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVI 537

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +T+ ++ + RK L      +F EM + G  PD G    LI A   +        L++ M
Sbjct: 538 IYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEM 597

Query: 241 H 241
            
Sbjct: 598 R 598



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 86/185 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++ ++M++  I   +  +  ++    K  ++     + N+M   G+KPD F  NS+++
Sbjct: 240 ALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLIS 299

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++     +L+ M +     ++ T+N LI+ + + G + + E LF  +  + + P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 359

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++VT+ S +  +          +IF  M+   C PD  T   LI       ++E+   L 
Sbjct: 360 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELF 419

Query: 238 RTMHK 242
           R M +
Sbjct: 420 REMSQ 424



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 88/190 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  +F +M+  GI P + ++  L++     G  +    +++ M +  + P+    N
Sbjct: 271 HMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFN 330

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++ + + G+  + E++   M + S   +I TYN LIN +     +++ + +F  + +K
Sbjct: 331 SLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 390

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDVVT+ + +  + + K     +E+F EM   G   +  T   LI         +  
Sbjct: 391 DCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 450

Query: 234 TTLVRTMHKD 243
             + + M  D
Sbjct: 451 QKIFKKMVSD 460



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A A+ ++M  +G  P   +   L+         ++   +I++M   G +PD F   +
Sbjct: 167 ISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 226

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G  +    +L  MEKG   A++  YN +I+   +   ++    LF  +  K 
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 286

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPDV T+ S ++       +     +  +MI+    P+  T   LI A + E ++ +  
Sbjct: 287 IKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAE 346

Query: 235 TLVRTM 240
            L   M
Sbjct: 347 KLFDEM 352



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 82/199 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA A+F EM +    P++     LL+A +K         +  QM   G+  + +  + 
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN + R  Q      VL  M K  Y  DI T + L+N Y  G  I +   L   +    
Sbjct: 122 LLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMG 181

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KPD VT+ + +            + + + M+  GC PD  T   +++       I+   
Sbjct: 182 YKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 241

Query: 235 TLVRTMHKDMKTALPIYFN 253
           +L++ M K    A  + +N
Sbjct: 242 SLLKKMEKGKIEANVVIYN 260



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 85/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A A+ + M   G  P + ++  ++    K G++     ++ +M K  ++ +  + N++
Sbjct: 203 SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTI 262

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +    +   ++   ME      D+ TYN LI+     G       L   +  +++
Sbjct: 263 IDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKI 322

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+ S + A++++       ++F+EMI     P+  T   LI+     D++++   
Sbjct: 323 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 382

Query: 236 LVRTM 240
           +   M
Sbjct: 383 IFTLM 387



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/213 (18%), Positives = 90/213 (42%), Gaps = 35/213 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +  +M    I P + +   L+ A++K G + + E + ++M +  + P+    NS
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNS 366

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK------------ 162
           ++N +    + ++ +++ T M       D+ TYN LI  + +   +E+            
Sbjct: 367 LINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 426

Query: 163 -----------MEGLFQS------------LPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                      ++GLFQ+            + +  + PD++T++  L    +     + L
Sbjct: 427 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL 486

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            +FE +  +   P+  T  ++I       ++E 
Sbjct: 487 VVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVED 519


>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
 gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
          Length = 356

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 85/163 (52%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F E+K  G+  T++S+ +++ A++K G++ K E VI +M +  L+PD F  N+++  Y 
Sbjct: 85  LFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYA 144

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              + E+  +V + M+      DI TY  LI ++ R    ++   +F+ +   + +PD  
Sbjct: 145 MSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFF 204

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            ++  ++ Y +  L    L IF  +   G  P+  T   LISA
Sbjct: 205 VYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISA 247



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 3/186 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F+ +K L     ++ +  ++ AY +         V +QM   G+ PD    + 
Sbjct: 12  IEDAEELFQWIK-LQDWDKLRPYNAMIAAYYQAKRPKDAWDVYHQMLAEGIDPDEVTYDI 70

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G+ G    ++ +   ++    A  + +YN++I  + + G I+K+E + + +  + 
Sbjct: 71  LVSGSGKNGY--PIDRLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQE 128

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+PD+ ++ + +AAY+  +   R L++F  M  AG  PD  T   LI   S     ++  
Sbjct: 129 LRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSSMHKEAI 188

Query: 235 TLVRTM 240
            +   M
Sbjct: 189 EMFEEM 194



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/180 (18%), Positives = 78/180 (43%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF  MK  G+ P + ++  L+  +S++    +   +  +M  +  +PD FV + ++++YG
Sbjct: 155 VFSNMKAAGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYG 214

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G       +   ++   +  +I TY  LI+ +   G +E+    F  + A   + DV 
Sbjct: 215 KAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVH 274

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              + + AY++  +      +   +   G  P+  +  +++        +E+      +M
Sbjct: 275 LLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVEEALAAYASM 334



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 73/171 (42%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +T  + +F  S    +A  +FEEM      P    + LL++ Y K G VA    + +
Sbjct: 168 IVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFH 227

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           ++   G +P+     S+++ +   G  E+  +  + ME     AD+   N +I+ Y + G
Sbjct: 228 RLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAG 287

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +     L   L A+ + P+  ++   +  +         L  +  M  AG
Sbjct: 288 MVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVEEALAAYASMSGAG 338



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/142 (19%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ FV+  + S+Y      +DA  +F  ++  G  P + ++  L++A+   G + +    
Sbjct: 201 PDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKH 260

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            +QM   G + D  ++N+M++ Y + G       +L  +       + ++Y I++  +  
Sbjct: 261 FSQMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLH 320

Query: 157 GGFIEKMEGLFQSLPAKRLKPD 178
            G +E+    + S+     K +
Sbjct: 321 AGHVEEALAAYASMSGAGFKDE 342


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 1/188 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  V E M+   ++P  +++  L+  Y K+ NV K  GV+N+M +  + PD    NS
Sbjct: 409 IEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNS 467

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R G F+    +L+ M       D  TY  +I+   +   +E+   LF SL  K 
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKG 527

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+VV +T+ +  Y +         + E+M+   C P+  T   LI    ++ ++++ T
Sbjct: 528 VNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEAT 587

Query: 235 TLVRTMHK 242
            L   M K
Sbjct: 588 LLEEKMVK 595



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 84/169 (49%), Gaps = 1/169 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F +MK     PT++++ +L+ +   +   ++   ++ +M ++G+KP+      
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++      +FEK  E+L  M +     ++ TYN LIN Y + G IE    + + + +++
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L P+  T+   +  Y +  ++ + + +  +M++    PD  T   LI  
Sbjct: 424 LSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVLPDVVTYNSLIDG 471



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 2/164 (1%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           LL + ++ G V + + V  +M +  + P+ +  N M+N Y +LG  E+  + ++ + +  
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG 248

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TY  LI  Y +   ++    +F  +P K  + + V +T  +      +     +
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAM 308

Query: 200 EIFEEMIDAGCYPDGGTAKVLI-SACSSEDQIEQVTTLVRTMHK 242
           ++F +M D  C+P   T  VLI S C SE + E +  LV+ M +
Sbjct: 309 DLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEAL-NLVKEMEE 351



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 86/217 (39%), Gaps = 25/217 (11%)

Query: 30  SHFMLINFLLLQHTPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLT 82
           +H ML   L     PN   F   I+         +A  + E+M ++G+ PT+ +  +L+ 
Sbjct: 551 AHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIH 610

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
              K G+         QM  SG KPD     + +  Y R G+    E+++  M +   + 
Sbjct: 611 RLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSP 670

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS------------------ 184
           D+ TY+ LI  YG  G       + + +     +P   T+ S                  
Sbjct: 671 DLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEP 730

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            L A S    +   +E+ E+M++    P+  + + LI
Sbjct: 731 ELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 59/131 (45%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++LN   R G  ++M++V   M +     +I TYN ++N Y + G +E+       +  
Sbjct: 187 NTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVE 246

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             L PD  T+TS +  Y ++K      ++F EM   GC  +      LI       +I++
Sbjct: 247 AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE 306

Query: 233 VTTLVRTMHKD 243
              L   M  D
Sbjct: 307 AMDLFVKMKDD 317



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 75/167 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ +++ G+ P +  +  L+  Y K G V +   ++ +M      P++   N+++
Sbjct: 515 EACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALI 574

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +     G+ ++   +   M K      +ST  ILI+   + G  +     FQ + +   K
Sbjct: 575 HGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTK 634

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD  T+T+ +  Y R+       ++  +M + G  PD  T   LI  
Sbjct: 635 PDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKG 681



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 2/181 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ EM    + P + ++  ++  Y K GNV +    ++++ ++GL PD F   S++  Y 
Sbjct: 205 VYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYC 264

Query: 121 RLGQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           +    +   +V   M  KG    +++ Y  LI+       I++   LF  +      P V
Sbjct: 265 QRKDLDSAFKVFNEMPLKGCRRNEVA-YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTV 323

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+T  + +    +     L + +EM + G  P+  T  VLI +  S+ + E+   L+  
Sbjct: 324 RTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQ 383

Query: 240 M 240
           M
Sbjct: 384 M 384



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 75/164 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M    + P + ++  L+    ++GN      +++ M+  GL PD +   SM++
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMID 505

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + E+  ++  ++E+     ++  Y  LI+ Y + G +++   + + + +K   P
Sbjct: 506 SLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLP 565

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + +T+ + +         +    + E+M+  G  P   T  +LI
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILI 609



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 1/181 (0%)

Query: 44  PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103
           P L      + F     + E+M    +TP  KS+  L+    + GN+   E V + M ++
Sbjct: 730 PELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRN 789

Query: 104 -GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G+ P   V N++L+   +L +  +  +V+  M    +   + +  +LI    + G  E+
Sbjct: 790 EGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKER 849

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              +FQ+L       D + W   +    ++ L     E+F  M   GC     T  +LI 
Sbjct: 850 GTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909

Query: 223 A 223
            
Sbjct: 910 G 910



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 8/170 (4%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP----DTFV 111
            +AH + E+M      P   +   L+      G + +   +  +M K GL+P    DT +
Sbjct: 549 DEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTIL 608

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           I+ +L    + G F+        M       D  TY   I  Y R G +   E +   + 
Sbjct: 609 IHRLL----KDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR 664

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
              + PD+ T++S +  Y          ++ + M D GC P   T   LI
Sbjct: 665 ENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI 714



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/267 (17%), Positives = 102/267 (38%), Gaps = 58/267 (21%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A++ F++M   G  P   ++   +  Y + G +   E ++ +M ++G+ PD F  +S
Sbjct: 618 FDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSS 677

Query: 115 MLNLYGRLGQ-------------------------------------------------- 124
           ++  YG LGQ                                                  
Sbjct: 678 LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSN 737

Query: 125 ---FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVV 180
              F+ + E+L  M + S   +  +Y  LI      G +   E +F  +     + P  +
Sbjct: 738 MMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSEL 797

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + L+   + K +    ++ ++MI  G  P   + KVLI     + + E+ T++ + +
Sbjct: 798 VFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNL 857

Query: 241 ----HKDMKTALPIYFNLYGEKGVARS 263
               + + + A  I  +  G++G+  +
Sbjct: 858 LQCGYYEDELAWKIIIDGVGKQGLVEA 884



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/189 (17%), Positives = 82/189 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A+ +   M   G+ P   ++  ++ +  K+  V +   + + + + G+ P+  +  +
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y + G+ ++   +L  M   +   +  T+N LI+     G +++   L + +    
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P V T T  +    +   +      F++M+ +G  PD  T    I     E ++    
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAE 657

Query: 235 TLVRTMHKD 243
            ++  M ++
Sbjct: 658 DMMAKMREN 666



 Score = 37.0 bits (84), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y   I  YN L+N   R G +++M+ ++  +   ++ P++ T+   +  Y +        
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEAN 238

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
           +   ++++AG  PD  T   LI   C  +D
Sbjct: 239 QYVSKIVEAGLDPDFFTYTSLIMGYCQRKD 268


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 90/189 (47%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S    +A  + E M +  + P + ++  L+  Y KTG       +I +M +SG  PD   
Sbjct: 221 SYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVT 280

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            NS+++ + +  + +K  EVL  M+KG  A ++ TYN+LI+     G   +   L   + 
Sbjct: 281 FNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMD 340

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            + + PD++T+ S +  + R     +  +I   M++ G  PDG +   L  A    ++ +
Sbjct: 341 GRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFD 400

Query: 232 QVTTLVRTM 240
           +   L+  M
Sbjct: 401 EAFALLDNM 409



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 96/197 (48%), Gaps = 2/197 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EMK  G +P + +H  ++ A   TGN+++      +  +    PD+ + N +++
Sbjct: 124 AFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECA--PDSVLFNILVH 181

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  Q  +  +++  M +     D+ TYN LI+   +   +E+   L +++  ++++P
Sbjct: 182 GLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRP 241

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++VT+ + +  Y +        ++ E MI +G +PD  T   LIS    + +I++   ++
Sbjct: 242 NLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVL 301

Query: 238 RTMHKDMKTALPIYFNL 254
             M K +     + +N+
Sbjct: 302 HLMKKGLCAPNLVTYNV 318



 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN LI  + + G +E+   L   +  +   PDVVT +S + A        R ++ F E 
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRES 166

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           ++  C PD     +L+      +Q+ +   ++  M +
Sbjct: 167 VE--CAPDSVLFNILVHGLCKANQLSEARQMIEEMSE 201



 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/168 (17%), Positives = 70/168 (41%), Gaps = 3/168 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           +F  +     A  +   M   G+ P   S+  L  A  K+    +   +++ M  +G  P
Sbjct: 357 IFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIP 416

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           + F  NS++       + ++   +L  M +       STY +L+    + G ++  + + 
Sbjct: 417 NLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVL 476

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA---GCYP 212
             + ++ ++P V +  + +   +R+      L  F++++ A    C P
Sbjct: 477 VMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDP 524


>gi|356495758|ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 554

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 100/206 (48%), Gaps = 4/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ V +EM   GI  + +++ + L  Y   G +      IN M + G   ++FV + ++ 
Sbjct: 170 ANGVLKEMDYSGIWRSKETYQIFLDYYVGAGRLEDTWSTINVMKQKGFPLNSFVYSKVVG 229

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y   G ++K  EVL  + +   + D    N +I+ +G+ G +++   LF+ +  + ++P
Sbjct: 230 IYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRP 289

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++VTW S +  + ++  + +   +F +M + G YPD      +IS    + +   +    
Sbjct: 290 NIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDPKIFVTIISCMGEQGKWGIIKKYF 349

Query: 238 RTM----HKDMKTALPIYFNLYGEKG 259
            +M    +K+      +  ++YG+ G
Sbjct: 350 ESMKIRGNKEYGAVYAVLVDIYGQYG 375



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 85/189 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  +  +F +M+  G+ P  K  + +++   + G     +     M   G K    V   
Sbjct: 307 FMKSFHLFTDMQEQGLYPDPKIFVTIISCMGEQGKWGIIKKYFESMKIRGNKEYGAVYAV 366

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++YG+ G+F+   E + A++        S + +L N Y + G  E++  + Q + A+ 
Sbjct: 367 LVDIYGQYGKFQNARECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEG 426

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P++V     + A+     Y   + ++  + ++G  PD  T   L+ A     + ++V 
Sbjct: 427 IEPNIVMLNMLINAFGNAGRYMEAMSVYHHIKESGVSPDVVTYTTLMKAFIRAKKFDEVP 486

Query: 235 TLVRTMHKD 243
            + + M  D
Sbjct: 487 IIYKEMEND 495



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 9/200 (4%)

Query: 44  PNLFVFIFSIYFSDAH-----AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +FV I S              FE MK  G       + +L+  Y + G        + 
Sbjct: 326 PKIFVTIISCMGEQGKWGIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNARECVQ 385

Query: 99  QMHKSGL--KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            +   G+   P  F +  + N Y + G  E++  VL  ME      +I   N+LIN +G 
Sbjct: 386 ALKSEGVLVSPSIFCV--LANAYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGN 443

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +   ++  +    + PDVVT+T+ + A+ R K +     I++EM +  C PD   
Sbjct: 444 AGRYMEAMSVYHHIKESGVSPDVVTYTTLMKAFIRAKKFDEVPIIYKEMENDRCTPDRKA 503

Query: 217 AKVLISACSSEDQIEQVTTL 236
            ++L  A   E++  + +T+
Sbjct: 504 RQMLQVALMFEERKLRFSTM 523



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 86/210 (40%), Gaps = 4/210 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D  +    MK+ G       +  ++  Y   G   K   V+ ++ + G+  DT + NS
Sbjct: 202 LEDTWSTINVMKQKGFPLNSFVYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNS 261

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +G+ G+ ++  ++   M+K     +I T+N LI  + + G   K   LF  +  + 
Sbjct: 262 IIDTFGKYGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQG 321

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD   + + ++    +  +    + FE M   G    G    VL+       + +   
Sbjct: 322 LYPDPKIFVTIISCMGEQGKWGIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNAR 381

Query: 235 TLVRTMHKDMKTALPIYF----NLYGEKGV 260
             V+ +  +     P  F    N Y ++G+
Sbjct: 382 ECVQALKSEGVLVSPSIFCVLANAYAQQGL 411



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 95/219 (43%), Gaps = 12/219 (5%)

Query: 35  INFLLLQHTP-NLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHML--LLTAY 84
           IN +  +  P N FV+  +  IY     +  A  V EE++  GI+  + +H+   ++  +
Sbjct: 209 INVMKQKGFPLNSFVYSKVVGIYRDNGMWKKAIEVLEEIRERGIS--LDTHICNSIIDTF 266

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
            K G + +   +  +M K G++P+    NS++  + + G F K   + T M++     D 
Sbjct: 267 GKYGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDP 326

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
             +  +I+  G  G    ++  F+S+  +  K     +   +  Y +   ++   E  + 
Sbjct: 327 KIFVTIISCMGEQGKWGIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNARECVQA 386

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           +   G         VL +A + +   EQV  +++ M  +
Sbjct: 387 LKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAE 425


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+ F +   I       + + AH +F EM   G  P + ++ +++   +K  N      
Sbjct: 490 SPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALE 549

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M  +G +PD    + ++ + G  G  E+ E + T M++ ++  D   Y +L++++G
Sbjct: 550 LYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWG 609

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +EK    +Q++    L P+V T  S L+A+ R         + + M+  G  P   
Sbjct: 610 KVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQ 669

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 670 TYTLLLSCCT 679



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 101/209 (48%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + +  EM R G  P + ++  L+ +Y +   + +   V ++M ++G +PD     +
Sbjct: 404 FGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCT 463

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +    +   M++   + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 464 LIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQG 523

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +A  ++ + Y   LE++ +M +AG  PD  T  +++        +E+  
Sbjct: 524 CVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAE 583

Query: 235 TLVRTM-HKDMKTALPIY---FNLYGEKG 259
            +   M  K+     P+Y    +L+G+ G
Sbjct: 584 AIFTEMKRKNWVPDEPVYGLLVDLWGKVG 612



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 35/222 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y ++A +VF+ M+  G  P   ++  L+  ++K G +     +  +M ++ L PDTF  +
Sbjct: 438 YLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYS 497

Query: 114 SMLNLYGRLGQFEKME-----------------------------------EVLTAMEKG 138
            ++N  G+ G                                         E+   M+  
Sbjct: 498 VIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNA 557

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            +  D  TY+I++ + G  G +E+ E +F  +  K   PD   +   +  + +     + 
Sbjct: 558 GFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKS 617

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            E ++ M++AG  P+  T   L+SA     ++     L+++M
Sbjct: 618 WEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSM 659



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 62/121 (51%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           ++G K D     +M+ + GR  QF  + ++L  M +     ++ TYN LI+ YGR  ++ 
Sbjct: 381 QTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLN 440

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F  +     +PD VT+ + +  +++       L ++++M +A   PD  T  V+I
Sbjct: 441 EAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVII 500

Query: 222 S 222
           +
Sbjct: 501 N 501


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 92/178 (51%), Gaps = 8/178 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  +F+E+    +     S   +++ Y++TGN  +   +   M K+ ++PD   + 
Sbjct: 215 YIENAQKLFDEIPVKDVV----SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 270

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   + G  E   +V   ++   + +++   N LI++Y + G +E   GLF+ LP K
Sbjct: 271 TVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK 330

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               DV++W + +  Y+   LY+  L +F+EM+ +G  P+  T   ++ AC+    I+
Sbjct: 331 ----DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 384



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M  LG+ P   +   +L + +K+    + + +   + K G   D +V  S++++Y + G+
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E   +V       S   D+ +Y  LI  Y   G+IE  + LF  +P K    DVV+W +
Sbjct: 185 LEDAHKVFDK----SPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK----DVVSWNA 236

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            ++ Y+    Y+  LE+F++M+     PD  T   ++SAC+    IE
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 283



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG----SYAADISTYNILI 151
           +  +M +SG  P+   + S+L     LG  +    +   ++K     + A+ + T   LI
Sbjct: 354 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LI 411

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           ++Y + G IE    +F S+  K L     +W + +  ++         ++F  M   G  
Sbjct: 412 DMYAKCGDIEAAHQVFNSILHKSLS----SWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
           PD  T   L+SACS    ++    + RTM +D K
Sbjct: 468 PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYK 501



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 6/153 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG--NVAKCEGVINQMHKSGLKPDTFVI 112
           + +A  +F+EM R G TP   + + +L A +  G  ++ +   V       G+   + + 
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 407

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            S++++Y + G  E   +V  ++   S    +S++N +I  +   G  +    LF  +  
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKS----LSSWNAMIFGFAMHGRADASFDLFSRMRK 463

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             ++PD +T+   L+A S   +      IF  M
Sbjct: 464 IGIQPDDITFVGLLSACSHSGMLDLGRHIFRTM 496


>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
 gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
          Length = 491

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 5/192 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-----LKPDTF 110
           S A  V   M   GI PT  ++ ++L  + + G +        QM K G      KPD  
Sbjct: 216 SRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVV 275

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
              +M++  G  GQ EK  +V   M K   A  ++TYN LI +  + G +E    +F  +
Sbjct: 276 SYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGM 335

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
             K   P+VVT+T  +          R L++ E M + GC P   T  VLI     E ++
Sbjct: 336 RVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEM 395

Query: 231 EQVTTLVRTMHK 242
           E+   L   M K
Sbjct: 396 EKGLDLFEKMSK 407



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 16/206 (7%)

Query: 41  QHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           Q  P+L V +F +    +H V +++      P   S   LL A SK+ +  K   ++  +
Sbjct: 142 QRRPDLAVRLF-LSLHRSHRVAQDL------PLFNS---LLDALSKSRHAGKAASLVRAL 191

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            +    PD    N++ + + R+    +  +VL  M +   A   +TYNI++  + R G +
Sbjct: 192 EQR-FTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQL 250

Query: 161 EKMEGLFQSLPAK-----RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
                 F  +  +       KPDVV++T+ +          +  ++F+EM   GC P   
Sbjct: 251 RHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVA 310

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
           T   LI     +  +E   T+   M 
Sbjct: 311 TYNALIQVICKKGNVEDAVTVFDGMR 336



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 11/147 (7%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEV-----LTAMEKGSYAADISTYNILINIYG 155
           H+    P TF I     L+ RL   ++  ++     L+       A D+  +N L++   
Sbjct: 122 HRLAFTPRTFPI-----LFERLAVSQRRPDLAVRLFLSLHRSHRVAQDLPLFNSLLDALS 176

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +     K   L ++L  +R  PDVVT+ +    + R K   R L++   M+++G  P   
Sbjct: 177 KSRHAGKAASLVRAL-EQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKT 235

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  +++       Q+         M K
Sbjct: 236 TYNIILKGFFRAGQLRHAWDFFLQMKK 262


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 2/197 (1%)

Query: 42  HTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
             P+  V +   S    DA  VF++M+  G+ P   +   LLTA ++    A    V ++
Sbjct: 115 RVPSWLVLVLAQSARPHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRVFDE 174

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M ++GL   T V N+ML++  + G   + E ++T M+      D  +YN +I +Y + G 
Sbjct: 175 MARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGM 234

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             +   +   +  + ++ D VTW S +    +    +   ++F EM  A   PD  T   
Sbjct: 235 RYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTT 294

Query: 220 LISACSSEDQIEQVTTL 236
           LI        IE+   L
Sbjct: 295 LIDGYCRAGNIEEAVKL 311



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 89/185 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+EM R G+  +   +  +L    K G+ A+ E ++ +M  +G+  D F  N+++ 
Sbjct: 168 ARRVFDEMARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIA 227

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LY + G   +   V   M+K    AD  T+N LI+   + G +++   LF  + A +  P
Sbjct: 228 LYCKKGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATP 287

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+T+ +  Y R       +++  EM   G  P   T   ++     + ++++V  L+
Sbjct: 288 DNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLL 347

Query: 238 RTMHK 242
             M +
Sbjct: 348 NEMDE 352



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 3/193 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM     TP   ++  L+  Y + GN+ +   +  +M  +G+ P     N++L
Sbjct: 272 EAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAIL 331

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 G+ +++ ++L  M++    AD  T N LIN Y + G +     + + +    L+
Sbjct: 332 RKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQ 391

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +  T+ + +  + + K      E F +M+DAG  P+      L+     ++  + V  +
Sbjct: 392 LNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLI 451

Query: 237 VRTMHKDMKTALP 249
              +   MK  LP
Sbjct: 452 PDEL---MKRGLP 461



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+   M   G+     S+  ++  Y K G   +   V ++M K G++ DT   NS+++
Sbjct: 203 AEALVTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEGIRADTVTWNSLIH 262

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  ++ T M       D  TY  LI+ Y R G IE+   L   + A  + P
Sbjct: 263 GLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLP 322

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            V T+ + L         +   ++  EM +     D  T   LI+A
Sbjct: 323 GVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINA 368



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/177 (19%), Positives = 79/177 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V + M + GI     +   L+    K G V +   +  +M  +   PD     +++
Sbjct: 237 EAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLI 296

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G  E+  ++   ME       ++TYN ++      G ++++  L   +  ++++
Sbjct: 297 DGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQ 356

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            D VT  + + AY ++       ++ ++M+++G   +  T K LI       ++++ 
Sbjct: 357 ADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEA 413



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 2/179 (1%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  G+ P + ++  +L    + G + +   ++N+M +  ++ D    N+++N Y + G
Sbjct: 314 EMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRG 373

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI-EKMEGLFQSLPAKRLKPDVVTW 182
                 +V   M +     +  TY  LI+ + +   + E  E  FQ + A    P+   +
Sbjct: 374 HMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAG-FSPNYSVF 432

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +  +  + +K      L I +E++  G  PD    + LI     +  ++Q   +   M 
Sbjct: 433 SWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQKVFDQMQ 491



 Score = 44.3 bits (103), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 64/134 (47%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AY K G++     V  +M +SGL+ + F   ++++ + +  + ++ +E    M    
Sbjct: 365 LINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAG 424

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           ++ + S ++ L++ + +    + +  +   L  + L PD   + S +    RK L  +  
Sbjct: 425 FSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQ 484

Query: 200 EIFEEMIDAGCYPD 213
           ++F++M   G   D
Sbjct: 485 KVFDQMQSKGLVGD 498


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRL------GITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           +PNLF     I      A+  E  RL      G+TP + ++  L+    K   V + E  
Sbjct: 248 SPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHY 307

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M   G +PD F  NS+++ Y +LG  +  +++L       +  D STY  LIN   +
Sbjct: 308 LRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQ 367

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G I++   +F     K LKP++V   + +   S++ L  + L++  EM + GC PD  T
Sbjct: 368 DGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWT 427

Query: 217 AKVLISACSSEDQIEQVTTLV 237
             ++I+       +     LV
Sbjct: 428 YNLVINGLCKIGCVSDADNLV 448



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 4/210 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +FEEM  LGI P + +   L+    + G+V + E ++N++ K G+ P+ F +N  +
Sbjct: 199 EAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFI 258

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + +     +   +L  + +G    D+ TYN LI    +   + + E   + +  +  +
Sbjct: 259 QGFCQRAMLNEAIRLLDGVGRG-LTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYE 317

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTT 235
           PD  T+ S +  Y +  + +   +I  +    G  PD  T   LI+  C   D    +  
Sbjct: 318 PDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINV 377

Query: 236 LVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
               M K +K  L +   L   KG+++  L
Sbjct: 378 FNEAMEKGLKPNLVLCNTLV--KGLSQQGL 405



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 2/182 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF E    G+ P +     L+   S+ G + +   ++N+M ++G  PD +  N ++N   
Sbjct: 377 VFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLC 436

Query: 121 RLGQFEKMEE-VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           ++G     +  V+ A+ KG +  D+ T+N LI+ Y +   ++    +   +    + PDV
Sbjct: 437 KIGCVSDADNLVIDAIAKG-HLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDV 495

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +T+ S L    +   Y   +  F+ M++ GC P+  T  +L  +     ++E+   L+  
Sbjct: 496 ITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEE 555

Query: 240 MH 241
           M 
Sbjct: 556 MQ 557



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 74/156 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM   G +P + ++ L++    K G V+  + ++      G  PD F  N++++
Sbjct: 409 ALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLID 468

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +  + +   E++  M     + D+ TYN ++N   + G  E + G F+ +  K   P
Sbjct: 469 GYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVP 528

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +++T+     ++ + +     L + EEM + G  PD
Sbjct: 529 NIITYNILTESFCKARKVEEALNLIEEMQNKGLTPD 564



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 88/202 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +  +    G  P   ++  L+    + G++ +   V N+  + GLKP+  + N++
Sbjct: 337 QNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTL 396

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G   +  +++  M +   + DI TYN++IN   + G +   + L     AK  
Sbjct: 397 VKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGH 456

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+ + +  Y +K      +EI + M + G  PD  T   +++      + E V  
Sbjct: 457 LPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMG 516

Query: 236 LVRTMHKDMKTALPIYFNLYGE 257
             + M +       I +N+  E
Sbjct: 517 TFKLMMEKGCVPNIITYNILTE 538



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 61/134 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  +  +    G  P + +   L+  Y K   +     ++++M   G+ PD    NS+
Sbjct: 442 SDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSI 501

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LN   + G++E +      M +     +I TYNIL   + +   +E+   L + +  K L
Sbjct: 502 LNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGL 561

Query: 176 KPDVVTWTSRLAAY 189
            PDVV + + +  +
Sbjct: 562 TPDVVNFGTLMKGF 575



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/187 (18%), Positives = 75/187 (40%), Gaps = 1/187 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF  AH V+  M+  GI P + +  + + ++ +T        ++N M   G +       
Sbjct: 126 YFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYC 185

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  +       +  E+   M       DI  +N LI+   R G +++ E L   +  +
Sbjct: 186 TVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKR 245

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + P++ T    +  + ++ +    + + +  +  G  PD  T   LI       ++ + 
Sbjct: 246 GVSPNLFTVNIFIQGFCQRAMLNEAIRLLDG-VGRGLTPDVITYNTLICGLCKNFKVVEA 304

Query: 234 TTLVRTM 240
              +R M
Sbjct: 305 EHYLRKM 311



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 17/224 (7%)

Query: 17  APHSWNFNYL---------PYPSHFMLINFLLLQHTPNLFVF-------IFSIYFSDAHA 60
           +P  W +N +            +  ++I+ +   H P++F F          +   +A  
Sbjct: 422 SPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIE 481

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + + M   G++P + ++  +L    K G      G    M + G  P+    N +   + 
Sbjct: 482 IVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFC 541

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDV 179
           +  + E+   ++  M+      D+  +  L+  +   G ++    LF+ +  + +    +
Sbjct: 542 KARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTI 601

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            T+   + A++ K       ++F +M + G  PD  T +V+I  
Sbjct: 602 ATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDG 645



 Score = 43.9 bits (102), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 36/192 (18%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTA--------YSKTGNVAKCEGVINQMHKSGLKPDTF 110
           H  FE M+ +     M     LL          Y + G + +   V  +M     +P   
Sbjct: 53  HGEFEAMEEVLAETRMNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQ 112

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N+++N+      F++  +V   M       D+ T+ I +  + R         L  ++
Sbjct: 113 SYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNM 172

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           P++  +   V + + +  +  +       E+FEEM+  G  PD      LI     +  +
Sbjct: 173 PSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHV 232

Query: 231 EQVTTLVRTMHK 242
           ++   L+  + K
Sbjct: 233 QESERLLNKVLK 244



 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 18/149 (12%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSMLNLYGRLGQFEKMEEVL 132
           +  H+  +  Y K  N  K   + N + K  G K        M+   G  G+FE MEEVL
Sbjct: 6   LPKHVAAVVKYQK--NPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVL 63

Query: 133 --------TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                     + +G Y   +         YGR G I++   +F+ +     +P V ++ +
Sbjct: 64  AETRMNIDNGLLEGVYIGAMRN-------YGRKGKIQEAVDVFERMDFFNCEPSVQSYNA 116

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +      + + +  +++  M D G  PD
Sbjct: 117 IMNILVEYRYFDQAHKVYMRMRDKGIVPD 145



 Score = 37.4 bits (85), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 8/179 (4%)

Query: 43  TPNLFVF-IFSIYFSDAHAV------FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PN+  + I +  F  A  V       EEM+  G+TP + +   L+  +   G++     
Sbjct: 527 VPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQ 586

Query: 96  VINQMHKSGLKPDTFVI-NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           +  ++ +      T    N M+N +         E++   M +  ++ D  TY ++I+ +
Sbjct: 587 LFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGF 646

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            + G I            K L P + T+   L     K+     + I   M+  G  P+
Sbjct: 647 CKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPE 705



 Score = 37.4 bits (85), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 32/201 (15%), Positives = 77/201 (38%), Gaps = 2/201 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VFE M      P+++S+  ++    +     +   V  +M   G+ PD +    
Sbjct: 92  IQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTI 151

Query: 115 MLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +  + R  +      +L  M  +G  ++ ++   ++   Y     +E  E LF+ +   
Sbjct: 152 RMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHE-LFEEMLGL 210

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + PD++ +   +    RK   +    +  +++  G  P+  T  + I        + + 
Sbjct: 211 GICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEA 270

Query: 234 TTLVRTMHKDMKTALPIYFNL 254
             L+  + + +   +  Y  L
Sbjct: 271 IRLLDGVGRGLTPDVITYNTL 291


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 4/156 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V  +M+ +G+ P M ++ +L+ A+ K G++ +       M + GL+P+  V  S++   G
Sbjct: 120 VQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDMREQGLRPNVVVYTSVIATLG 179

Query: 121 RLGQFEKMEEVLTAMEKGS---YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LK 176
           +LG    ME     M++ S      + +TYN +++ YG+   ++KME L + + A   L 
Sbjct: 180 KLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQQMMDKMEALVERMRADPGLG 239

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            D  T ++ +AA+SR     + LE F+ +   G  P
Sbjct: 240 LDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQP 275



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 3/189 (1%)

Query: 34  LINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           L NF    H+  +  +  +     A   F+ +   G  P++ +   +L      G   + 
Sbjct: 240 LDNFT---HSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEM 296

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
              +++M + G+KP T V N+++N +G+      M +   AM +   AAD+ TYN LI+ 
Sbjct: 297 LRTLDKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDT 356

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + + G   + E  +  +  + L+P + T  S + AY+R   + + L +   M   G  PD
Sbjct: 357 WAKTGKAVEAEKFYVLMKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPD 416

Query: 214 GGTAKVLIS 222
                +LI 
Sbjct: 417 NVVFNLLID 425



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 5/145 (3%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           MKR G+ PTM +   L+ AY++     K   +I++M K G  PD  V N +++ YGR+G+
Sbjct: 373 MKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGK 432

Query: 125 FEKMEEVL-TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTW 182
            E+ E+VL  AM++   A + + +  +I  + R G ++K E     +      KPD+ T 
Sbjct: 433 PEEAEKVLCGAMKEYGIALETNNFTSVIEAWARNGNLDKAEEWLHRMNTDYATKPDIKTL 492

Query: 183 TSRLA---AYSRKKLYRRCLEIFEE 204
           T+ L+     +  K  RR + + E+
Sbjct: 493 TTLLSFCIPAADVKRGRRVIHMIEQ 517



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 4/188 (2%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           +H  ++ A+S+ G V K     + +  +G +P      ++L++ G  G+ ++M   L  M
Sbjct: 244 THSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKM 303

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
           ++       + YN +IN +G+   I  M   F+++    +  DV T+ + +  +++    
Sbjct: 304 KRLGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKA 363

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL- 254
               + +  M   G  P   T   L+ A +  DQ E+V  L+  M K+ +    + FNL 
Sbjct: 364 VEAEKFYVLMKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLL 423

Query: 255 ---YGEKG 259
              YG  G
Sbjct: 424 IDTYGRMG 431



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           V + +L  YGR G  +++ +V   M +      +STY ILI+ +G+ G + +M   ++ +
Sbjct: 100 VFDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDM 159

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA---GCYPDGGTAKVLISACSSE 227
             + L+P+VV +TS +A   +          F EM  +   G  P+  T   ++ +   +
Sbjct: 160 REQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQ 219

Query: 228 DQIEQVTTLVRTMHKD 243
             ++++  LV  M  D
Sbjct: 220 QMMDKMEALVERMRAD 235


>gi|358345906|ref|XP_003637015.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358347053|ref|XP_003637577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502950|gb|AES84153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503512|gb|AES84715.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 823

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 3/202 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V  E+  + +     ++  L+  Y K G +     +  +M K G+   T   N+M++LYG
Sbjct: 259 VCNEVSHVNVCLNSHTYNTLIDTYGKAGQIRVVYEIFARMIKQGVVLTTVTFNTMIHLYG 318

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+  ++  +L  ME+     D  TYNILI++  +   I      F  +    L+PDVV
Sbjct: 319 NHGRIREVSSLLKRMEELRCLPDTRTYNILISVLVKHNNINLATKYFAKMKEAFLEPDVV 378

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + L AYS +K+ +   EI +EM + G   D  T   L       + +E+        
Sbjct: 379 SYRTLLYAYSTRKMVQEAEEIVQEMDERGLKIDEFTQSALTRMYVESNMLEKSWLWFMRF 438

Query: 241 HKDMKTALPIY---FNLYGEKG 259
           H+D       Y    + YGEKG
Sbjct: 439 HQDGNITSCCYSANIDAYGEKG 460



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 25/201 (12%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            +++ EM   G+ P   ++  L+  YSK G + +    + +M   G++PD   +  ++ L
Sbjct: 162 ESLWNEMNENGVVPVNSTYGTLIDVYSKGGLIEEALAWLLRMQSEGMEPDEVTMGVVVQL 221

Query: 119 YGRLGQFEKMEEVLTAMEKG-------------------------SYAADISTYNILINI 153
           Y R G+F+K EE      +G                         +   +  TYN LI+ 
Sbjct: 222 YKRAGEFQKAEEFFLRWSRGEPLRIEIDHNPADTRRHVCNEVSHVNVCLNSHTYNTLIDT 281

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+ G I  +  +F  +  + +    VT+ + +  Y      R    + + M +  C PD
Sbjct: 282 YGKAGQIRVVYEIFARMIKQGVVLTTVTFNTMIHLYGNHGRIREVSSLLKRMEELRCLPD 341

Query: 214 GGTAKVLISACSSEDQIEQVT 234
             T  +LIS     + I   T
Sbjct: 342 TRTYNILISVLVKHNNINLAT 362



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 80/163 (49%), Gaps = 1/163 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A++  + M++ G       H  L+  Y+K G + + + +   +  S   P  F  N M++
Sbjct: 604 ANSYVDRMRKAGFIGNQAIHNTLMKLYTKLGYLKEAQEIYTLLQSSDQGPSVFSSNCMID 663

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LY      E+ +E+  +++K S A + S Y +++ +Y + G +++   + + +       
Sbjct: 664 LYTERLMVEQAKEIFESLKKNSIANEFS-YAMMLCMYKKIGRLDEAFQIAKEMGKLGFLT 722

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           D++++ + L  YS  +      + F+EMI++G  PD  T + L
Sbjct: 723 DLLSYNNVLGLYSMDRRLWEAKKTFKEMIESGIQPDDFTFRAL 765



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/148 (18%), Positives = 71/148 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A     +M+  G+      +  +++++ K G +   EG+ N+M    ++PD  +  +++N
Sbjct: 534 AKPYLNKMQVAGLVSDCIPYCAVISSFGKLGQLNMAEGLYNEMIGHDVEPDAIIFGALIN 593

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  +   +K    +  M K  +  + + +N L+ +Y + G++++ + ++  L +    P
Sbjct: 594 AFADVANVKKANSYVDRMRKAGFIGNQAIHNTLMKLYTKLGYLKEAQEIYTLLQSSDQGP 653

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            V +    +  Y+ + +  +  EIFE +
Sbjct: 654 SVFSSNCMIDLYTERLMVEQAKEIFESL 681



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 43/90 (47%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N M  + G+  ++  +E +   M +       STY  LI++Y +GG IE+       + +
Sbjct: 146 NIMFWILGKERKWRVLESLWNEMNENGVVPVNSTYGTLIDVYSKGGLIEEALAWLLRMQS 205

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           + ++PD VT    +  Y R   +++  E F
Sbjct: 206 EGMEPDEVTMGVVVQLYKRAGEFQKAEEFF 235



 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/106 (19%), Positives = 48/106 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  ++ + M+ L   P  +++ +L++   K  N+        +M ++ L+PD     ++L
Sbjct: 325 EVSSLLKRMEELRCLPDTRTYNILISVLVKHNNINLATKYFAKMKEAFLEPDVVSYRTLL 384

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
             Y      ++ EE++  M++     D  T + L  +Y     +EK
Sbjct: 385 YAYSTRKMVQEAEEIVQEMDERGLKIDEFTQSALTRMYVESNMLEK 430


>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
 gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
          Length = 316

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 26/223 (11%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+  VF   IY         +A   F +M++LG  P + ++  ++    K G +      
Sbjct: 78  PDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSR 137

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             QM   GL P+     ++++ +   G++EK EE+   M       +++T+N +I+   +
Sbjct: 138 FCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFK 197

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY-------SRKKLYRRCLEI-------- 201
            G + +   LF  +P    KP+VV++ + +  Y          KL    L I        
Sbjct: 198 EGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPNAVN 257

Query: 202 ----FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                + M+  G  P+  T K LI +C  +D+IE + TL R M
Sbjct: 258 LNTLLDGMLSIGLKPNVDTCKTLIDSCCEDDRIEDILTLFREM 300



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 88/187 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F  M + G  P   ++  LL  Y+  GN+     V + M ++G++PD  V N  
Sbjct: 27  AEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNVKDLMVQNGMRPDRHVFNIE 86

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y + G+ ++       M++  +  DI TY  +I+   + G ++     F  +    L
Sbjct: 87  IYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGL 146

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+++T+T+ +  +S    + +  E+F EM+D G  P+  T   +I     E ++ +   
Sbjct: 147 SPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARK 206

Query: 236 LVRTMHK 242
           L   M +
Sbjct: 207 LFDLMPR 213



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 3/191 (1%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M R G  P + ++ +L+    K+G  A+   + N M +SG KP+     S+L+ Y   G 
Sbjct: 1   MSRDGQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGN 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
              M  V   M +     D   +NI I  Y + G +++    F  +      PD+VT+T+
Sbjct: 61  LVDMNNVKDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTT 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
            +    +       +  F +MID G  P+  T   LI   S   + E+   L   M   M
Sbjct: 121 VIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEM---M 177

Query: 245 KTALPIYFNLY 255
              +P   N +
Sbjct: 178 DRGIPPNVNTF 188


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 38/248 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D  AVF  M   GI P + S+  L++AY+  G   +   V ++M +SG  PD     S++
Sbjct: 225 DCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLI 284

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +GR  Q  +  EV   M++     ++ +YN L++ YG  G++ +   + + +    + 
Sbjct: 285 STFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIH 344

Query: 177 PDVVTWTSRLAAYSR--KKL---------------------------------YRRCLEI 201
           P+VV+  + LAA  R  +K+                                 Y + + +
Sbjct: 345 PNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINL 404

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVA 261
           +  M +    PD  T  +LIS C    + E+     + M   +   +P+   +Y     A
Sbjct: 405 YRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEM---LDLRIPLSSEIYSSMICA 461

Query: 262 RSNLGQYI 269
            S  GQ +
Sbjct: 462 YSKQGQLV 469



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 35/221 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ MKR    P + S+  L+ AY   G + +   ++ +M + G+ P+   I ++L 
Sbjct: 296 AREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLA 355

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR GQ   ++ VL+A E      +    N  I  Y   G  EK   L++S+  K  KP
Sbjct: 356 ACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKP 415

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID------------------------------ 207
           D VT+T  ++   R   Y   L  F+EM+D                              
Sbjct: 416 DSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLF 475

Query: 208 -----AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
                +GC PD  T   +I+A S+ +  E+V  L + M  +
Sbjct: 476 NSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEAN 516



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  V ++M   G+ P + +H ++L+AY      +K       M  + ++PDT  +N 
Sbjct: 116 WREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNI 175

Query: 115 MLNLYGRLGQFEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           +++   ++ Q+ +  E+ ++M  ++     D+ T+  +I++Y   G IE  + +F ++ A
Sbjct: 176 VIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLA 235

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + +KP++V++ + ++AY+   + +    +F+EM  +G  PD  +   LIS      Q  +
Sbjct: 236 EGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPAR 295

Query: 233 VTTLVRTMHKD 243
              +   M ++
Sbjct: 296 AREVFDMMKRN 306



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  +     +S A + FE MK   I P   +  +++    K     +   + +
Sbjct: 135 LVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFS 194

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   +S  +PD     S+++LY   GQ E  + V + M       +I +YN LI+ Y  
Sbjct: 195 SMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYAS 254

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  ++   +F  +      PDVV++TS ++ + R +   R  E+F+ M    C P+  +
Sbjct: 255 HGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVS 314

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              L+ A  S   + Q   ++R M +D
Sbjct: 315 YNALMDAYGSNGYLPQAVDILREMEQD 341



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 2/172 (1%)

Query: 55  FSDAHAVFEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +  A  +F  M  KR    P + +   ++  YS  G +  C+ V + M   G+KP+    
Sbjct: 186 YGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSY 245

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++++ Y   G  ++   V   M++  +  D+ +Y  LI+ +GR     +   +F  +  
Sbjct: 246 NALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKR 305

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            + KP++V++ + + AY       + ++I  EM   G +P+  +   L++AC
Sbjct: 306 NKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAAC 357



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 2/185 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM++    P ++++  L+ A+ + G       ++  M ++ + P     N+++N
Sbjct: 49  ARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLIN 108

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G  G + +   V   M       D+ T+NI+++ Y  G    K    F+ +    ++P
Sbjct: 109 ACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRP 168

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIEQVTT 235
           D  T    +    + K Y + +EIF  M +  + C PD  T   +I   S   QIE    
Sbjct: 169 DTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKA 228

Query: 236 LVRTM 240
           +  TM
Sbjct: 229 VFSTM 233



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 74/171 (43%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   + +  G+  +M K   KPD    N+++N +GR GQ+     ++  M + 
Sbjct: 35  MMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWATNIMEDMLRA 94

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     ST+N LIN  G  G   +   + + +    + PD+VT    L+AY     Y + 
Sbjct: 95  AIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKA 154

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           L  FE M      PD  T  ++I       Q  Q   +  +M +      P
Sbjct: 155 LSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRP 205



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 121 RLGQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           ++G  E   +V   M+ + +Y A    YN++I ++ R   I++  GLF  +   R KPDV
Sbjct: 6   QIGSIEHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDV 65

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+ + + A+ R   +R    I E+M+ A   P   T   LI+AC S     +   + + 
Sbjct: 66  ETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKK 125

Query: 240 M 240
           M
Sbjct: 126 M 126



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 1/157 (0%)

Query: 85  SKTGNVAKCEGVINQM-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
           ++ G++  C  V + M ++        + N M+ L+ R  + ++   +   M+K     D
Sbjct: 5   TQIGSIEHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPD 64

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           + TYN LIN +GR G       + + +    + P   T+ + + A      +R  L + +
Sbjct: 65  VETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCK 124

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +M D G  PD  T  +++SA  S  Q  +  +    M
Sbjct: 125 KMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELM 161



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 60/131 (45%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           + +SM+  Y + GQ  K E +  +++      D+ TY  +IN Y      EK+  L+Q +
Sbjct: 454 IYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEM 513

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            A  ++ D +  ++ + A+++       L + E M + G   +      ++SACS     
Sbjct: 514 EANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDW 573

Query: 231 EQVTTLVRTMH 241
            + T L+  M 
Sbjct: 574 RKATDLINLME 584



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 68/151 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A   F+EM  L I  + + +  ++ AYSK G + K E + N +  SG  PD     +
Sbjct: 433 YEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTA 492

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+N Y     +EK+  +   ME  +   D    + L+  + +G     +  L + +  K 
Sbjct: 493 MINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKG 552

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +  +   +   L+A S  + +R+  ++   M
Sbjct: 553 IPFNDANFFEMLSACSILRDWRKATDLINLM 583


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 3/179 (1%)

Query: 55  FSDAHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            S AH +  EMK   I  P + ++  L+   SK G++ + + ++ +M   G KP+     
Sbjct: 381 LSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYA 440

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y + G +E+ E +   M       DI TYN +++ + + G + K EG++Q L  K
Sbjct: 441 ALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNK 500

Query: 174 R--LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
                PD +T+   +  Y R +   + L + +EM   G   D  T  VLI+  +  +++
Sbjct: 501 TSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEV 559



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 3/188 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+ +G  P + ++  L+  Y+K G   + E + ++M   G  PD    N++L+
Sbjct: 420 AKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLS 479

Query: 118 LYGRLGQFEKMEEVLTAME-KGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            + + G   K E V   ++ K SY + D  TY ILI+ Y R    E+   L Q + A+  
Sbjct: 480 AFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGW 539

Query: 176 KPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             D  T+   +A  +  +++  + L ++++M+D  C P       L+        +    
Sbjct: 540 SCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSAR 599

Query: 235 TLVRTMHK 242
           ++V+ M++
Sbjct: 600 SMVQEMNE 607



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 82/189 (43%), Gaps = 2/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV-IN 113
             DA  V +E+ R G  P   ++  L+    +   + +  G+I +M   G   +  V I+
Sbjct: 96  MDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYID 155

Query: 114 SMLNLYGRLGQFEKME-EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            +        Q  + E      M +     D+ TYN  I+   + G ++K   + + +  
Sbjct: 156 CIFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDR 215

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             + PDVVT+ S ++   +        ++F+ M++ GC PD  T  +++   S  ++++ 
Sbjct: 216 GGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDT 275

Query: 233 VTTLVRTMH 241
           V  ++  M 
Sbjct: 276 VDEVLEHMQ 284



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 3/169 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK--SGLKPDTFVI 112
           + +A ++F+EM   G  P + ++  +L+A+SK G ++K EGV  Q+    S   PD    
Sbjct: 452 YEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITY 511

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI-EKMEGLFQSLP 171
             +++ Y R    E+   +L  M    ++ D  TYN+LI        +  K   ++Q + 
Sbjct: 512 RILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQML 571

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            +   P    + S +  + R         + +EM + G   D    + L
Sbjct: 572 DQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHLVDASNLEAL 620



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 3/183 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM R GI P + +   +++   K   +     V   M + G  PD+   + ML+   
Sbjct: 209 MLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLS 268

Query: 121 RLGQFEKMEEVLTAME--KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           R  + + ++EVL  M+  K     ++ T+N  I    R G     + +   +      P+
Sbjct: 269 RANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPN 328

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++++   +    +        ++  +M+D+G C PD      LIS      ++ Q   L+
Sbjct: 329 LLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLL 388

Query: 238 RTM 240
             M
Sbjct: 389 IEM 391



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 4/184 (2%)

Query: 61  VFEEMK--RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           V E M+  + G    + +H   + A  ++G     + ++  M +SG  P+    N +++ 
Sbjct: 279 VLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDG 338

Query: 119 YGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-K 176
             + G  +   ++   M + G    D+  +N LI+ + + G + +   L   + AK +  
Sbjct: 339 LCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICV 398

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+ + +   S+    ++   + +EM   GC P+  T   LI+  +     E+  +L
Sbjct: 399 PDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESL 458

Query: 237 VRTM 240
              M
Sbjct: 459 FDEM 462



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 101/247 (40%), Gaps = 15/247 (6%)

Query: 21  WNFNYLPYPSHFMLINFLLLQHTP-NLFVFIFSIY-FSDAHAVF--------EEMKRLGI 70
           WN           LI  ++L+ +  NL V+I  I+ F +A            +EM   G 
Sbjct: 124 WNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGR 183

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P + ++   ++   K G + K   ++ +M + G+ PD     S+++   +  + +   +
Sbjct: 184 IPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQ 243

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP--DVVTWTSRLAA 188
           V   M +     D  TY+I+++   R   ++ ++ + + + A +     +V T  + + A
Sbjct: 244 VFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGA 303

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248
             R   +     I   MI++G  P+  +   +I        ++    L R M  D     
Sbjct: 304 LCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKML-DSGCCK 362

Query: 249 P--IYFN 253
           P  I+FN
Sbjct: 363 PDVIFFN 369



 Score = 44.7 bits (104), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 81/187 (43%), Gaps = 2/187 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+ ++M   G  P + ++  L+    K          + +M +SG +PD    NS+++
Sbjct: 29  AQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIH 88

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 + +    VL  + +  +A +  TY+ L+    R   +++  GL + +  +    
Sbjct: 89  GLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVC 148

Query: 178 DVVTWTSRLAAY--SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           ++V +   +  +  +R +  R      +EMI++G  PD  T    IS      ++++   
Sbjct: 149 NLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLE 208

Query: 236 LVRTMHK 242
           ++  M +
Sbjct: 209 MLEEMDR 215



 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 41/87 (47%)

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           M    Y A + TY  LI+   + G ++  + L Q +      P+VVT+T+ +    + + 
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLI 221
               ++  + M+ +GC PD  T   LI
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLI 87


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 6/207 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+EM   G+ P + +    + A  +   + + + + + M   G KP+    +++L+ Y 
Sbjct: 249 VFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYA 308

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G F  M  ++  M       +   +NILIN Y R G ++K   +F+ +  K + PD V
Sbjct: 309 AEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTV 368

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-RT 239
           T+ + +++  R       L  F  M+D G  P     + LI  C +  ++ +   L+   
Sbjct: 369 TFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEM 428

Query: 240 MHKDMKTALPIYF-----NLYGEKGVA 261
           M+KD+      YF     NL+ E  VA
Sbjct: 429 MNKDIPPPGVKYFSSIINNLFKEGRVA 455



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 19/227 (8%)

Query: 14  AQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPT 73
           A  AP  + +N        +LI+     H P L           A AVF  + R G+ P 
Sbjct: 116 AADAPTIYTYN--------ILIDCYRRMHRPEL-----------ALAVFGRLLRTGLGPD 156

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
           + S+  L+  +SK G V K   +  +M +  + PD    NS+++   +  +  K E VL 
Sbjct: 157 VCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLE 216

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            M       +  TYN LI  Y   G  ++   +F+ + +  L P VV   S + A  R  
Sbjct: 217 QMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHN 276

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             +   +IF+ M+  G  P+  +   L+   ++E     + +LV  M
Sbjct: 277 RIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLM 323



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V E+M   GI P  K++  L+  YS  G   +   V  +M  SGL P     NS ++   
Sbjct: 214 VLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALC 273

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R  + ++ +++  +M       +I +Y+ L++ Y   G    M  L   + +K + P+  
Sbjct: 274 RHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHR 333

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +   + AY+R  +  + + IFE+M + G  PD  T   +IS+
Sbjct: 334 FFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISS 376



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 79/166 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F +M    ++P + ++  L+    KT  + K E V+ QM  +G++P+    NS++ 
Sbjct: 176 AYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIY 235

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G +++   V   M        +   N  I+   R   I++ + +F S+  K  KP
Sbjct: 236 GYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKP 295

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +++++++ L  Y+ +  +     +   M+  G  P+     +LI+A
Sbjct: 296 NIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINA 341



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
           H +   P  +  N +++ Y R+ + E    V   + +     D+ +YN LI+ + + G +
Sbjct: 114 HAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEV 173

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           +K   LF  +  + + PDVVT+ S +    + K   +   + E+M+DAG  P+  T   L
Sbjct: 174 DKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSL 233

Query: 221 ISACSSEDQIEQVTTLVRTM 240
           I   S+    ++   + + M
Sbjct: 234 IYGYSTAGMWKESVRVFKEM 253



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 80/186 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+ + M  +GI P    +  L+  Y K G +     V   M   G+KP + + N +L
Sbjct: 491 EAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIIL 550

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  +    +++   M +      I TY +++    R    ++   L + L A  +K
Sbjct: 551 HGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK 610

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D++T+   ++A  +    +   E+F  +   G  P   T  ++IS    E+  E+   L
Sbjct: 611 FDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNL 670

Query: 237 VRTMHK 242
             ++ K
Sbjct: 671 FISVEK 676



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 1/153 (0%)

Query: 58  AHAVFEEMKRLGITPT-MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +  EM    I P  +K    ++    K G VA+ + +++ M ++G +P+    NS++
Sbjct: 421 AKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLM 480

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y  +G  E+   +L AM       +   Y  L++ Y + G I+    +F+ +  K +K
Sbjct: 481 EGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVK 540

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           P  V +   L    + +      ++F EMI++G
Sbjct: 541 PTSVLYNIILHGLFQARRTTAAKKMFHEMIESG 573



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 2/196 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE+M+  G+ P   +   ++++  + G +       N M   G+ P   V   ++ 
Sbjct: 351 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQ 410

Query: 118 LYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                G+  K +E+++ M  K      +  ++ +IN   + G + + + +   +     +
Sbjct: 411 GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQR 470

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VVT+ S +  Y           + + M   G  P+      L+       +I+   T+
Sbjct: 471 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 530

Query: 237 VRTM-HKDMKTALPIY 251
            R M HK +K    +Y
Sbjct: 531 FRDMLHKGVKPTSVLY 546



 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  +   G+ PT+ ++ L+++   K  +  + + +   + KSG  PD+ ++N ++
Sbjct: 631 EAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIV 690

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +  +  +  K    L+ +++ +   + ST ++L +++ R G   K     + LPAK
Sbjct: 691 RMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSREG---KCREHIKLLPAK 744



 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/121 (19%), Positives = 57/121 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM   G T +++++ ++L    +     +   ++ ++    +K D    N +++
Sbjct: 562 AKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVIS 621

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G+ ++ +E+  A+        + TYN++I+   +    E+ + LF S+      P
Sbjct: 622 AMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAP 681

Query: 178 D 178
           D
Sbjct: 682 D 682


>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
          Length = 1765

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 87/178 (48%)

Query: 49   FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
            FI S    DA  +FE M+  GI P + S   ++  Y + G +++    ++ M K G  PD
Sbjct: 1437 FIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPD 1496

Query: 109  TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
             F   ++++ Y + G        L  M K     ++ TY+ LIN Y + G  +  EGLF 
Sbjct: 1497 EFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFA 1556

Query: 169  SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
            ++ A+ L P+VVT+T  + +  +K    R    FE M+   C P+  T   L++  +S
Sbjct: 1557 NMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTS 1614



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 78/184 (42%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + DA  +++EM          S  +L+        V +   +I     +G  P     N 
Sbjct: 1128 WDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNV 1187

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +++ Y R G   +   +L  ME   +   + TY  LIN  G+ G +EK+  LF  +  + 
Sbjct: 1188 LIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRG 1247

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              P+V  + S + A  + +   + + I ++M  +GC PD  T   LI+    E  + +  
Sbjct: 1248 FSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAE 1307

Query: 235  TLVR 238
              +R
Sbjct: 1308 HFLR 1311



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 68/158 (43%)

Query: 64   EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
            EM+  G  PT+ ++  L+    K G++ K   +  +M K G  P+  + NS+++   +  
Sbjct: 1207 EMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCR 1266

Query: 124  QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
               +   +L  M       DI T+N LI      G + K E   +    + L P+ +++T
Sbjct: 1267 SATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYT 1326

Query: 184  SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
              +  +  +       ++  EM+  G  PD  T   LI
Sbjct: 1327 PLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALI 1364



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 4/210 (1%)

Query: 60   AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            ++F EM++ G +P ++ +  ++ A  K  +  +   ++ QM  SG  PD    N+++   
Sbjct: 1238 SLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGL 1297

Query: 120  GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               G   K E  L    +     +  +Y  LI+ +   G +     L   +  +   PDV
Sbjct: 1298 CHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDV 1357

Query: 180  VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            VT+ + +            L + E+M +   +PD     VLIS    +  +     ++  
Sbjct: 1358 VTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEE 1417

Query: 240  M-HKDMKTALPIYFNLYGEKGVARS-NLGQ 267
            M  K+++    +Y  L    G  RS NLG 
Sbjct: 1418 MLEKNVQPDEFVYATLI--DGFIRSENLGD 1445



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/158 (18%), Positives = 69/158 (43%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            + A  + ++M   G  P + +   L+T     G+V K E  + +  +  L P+      +
Sbjct: 1269 TQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPL 1328

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            ++ +   G+     ++L  M    +  D+ T+  LI+     G + +   + + +  +++
Sbjct: 1329 IHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 1388

Query: 176  KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             PDV  +   ++   +K++      I EEM++    PD
Sbjct: 1389 FPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPD 1426



 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 77/191 (40%)

Query: 40   LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
            L +TP +  F        A  +  EM   G TP + +   L+      G V++   V  +
Sbjct: 1323 LSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREK 1382

Query: 100  MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
            M +  + PD  + N +++   +       + +L  M + +   D   Y  LI+ + R   
Sbjct: 1383 MTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSEN 1442

Query: 160  IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            +     +F+ +  K + PD+V+  + +  Y +  +    +     M   GC PD  T   
Sbjct: 1443 LGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTT 1502

Query: 220  LISACSSEDQI 230
            +IS  + +  +
Sbjct: 1503 VISGYAKQGNL 1513



 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/160 (18%), Positives = 64/160 (40%)

Query: 54   YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            +   A     E  R  + P   S+  L+  +   G +     ++ +M   G  PD     
Sbjct: 1302 HVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFG 1361

Query: 114  SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++++     G+  +   V   M +     D++ YN+LI+   +   +   + + + +  K
Sbjct: 1362 ALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEK 1421

Query: 174  RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             ++PD   + + +  + R +      +IFE M   G  PD
Sbjct: 1422 NVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPD 1461


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 93/196 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+  G  P + ++ +L+    K G + +    +N M   G +P+    N +L 
Sbjct: 101 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 160

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++   E++L+ M +   +  + T+NILIN   R G + +   + + +P     P
Sbjct: 161 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 220

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +++   L  + ++K   R +E  + M+  GCYPD  T   L++A   + +++    ++
Sbjct: 221 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 280

Query: 238 RTMHKDMKTALPIYFN 253
             +     + + I +N
Sbjct: 281 NQLSSKGCSPVLITYN 296



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 87/201 (43%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L + P L  F        A    + M   G  P + ++  LLTA  K G V     ++NQ
Sbjct: 223 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 282

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +   G  P     N++++   ++G+ E+  ++L  M +     DI TY+ L++   R G 
Sbjct: 283 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 342

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++    F  L    ++P+ +T+ S +    + +   R ++    MI   C P   T  +
Sbjct: 343 VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTI 402

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI   + E   ++   L+  +
Sbjct: 403 LIEGIAYEGLAKEALDLLNEL 423



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 83/177 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +M R G +P++ +  +L+    + G + +   ++ +M   G  P++   N +L
Sbjct: 170 DAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLL 229

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + +  + ++  E L  M       DI TYN L+    + G ++    +   L +K   
Sbjct: 230 HGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS 289

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           P ++T+ + +   S+     R +++ +EM   G  PD  T   L+S  S E ++++ 
Sbjct: 290 PVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEA 346



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 14/236 (5%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           +LINFL  Q                A  + E+M   G TP   S+  LL  + K   + +
Sbjct: 192 ILINFLCRQG-----------LLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 240

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
               ++ M   G  PD    N++L    + G+ +   E+L  +     +  + TYN +I+
Sbjct: 241 AIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVID 300

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              + G  E+   L   +  K LKPD++T++S ++  SR+      ++ F ++   G  P
Sbjct: 301 GLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRP 360

Query: 213 DGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
           +  T   +++  C S      +  L   + K  K     Y  L   +G+A   L +
Sbjct: 361 NAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILI--EGIAYEGLAK 414


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 3/182 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M R G+ P + ++  L+    K G   +   V + M K G KPD+ +  ++L
Sbjct: 259 EAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLL 318

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y   G   +M ++L  M +     D   +NILI  Y + G +++    F  +  + L 
Sbjct: 319 HGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLH 378

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI---SACSSEDQIEQV 233
           P++VT+ + + A  R       +  F+ +I  G  P+G   + LI    AC   D+ E++
Sbjct: 379 PNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEEL 438

Query: 234 TT 235
             
Sbjct: 439 AV 440



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 88/197 (44%), Gaps = 1/197 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A   F +M++ G+ P + ++  ++ A  + G V       +++   GL P+  V  ++
Sbjct: 363 DEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTL 422

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++      +++K EE+   M       +   +N L+N   + G + + + +F  +    +
Sbjct: 423 IHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDV 482

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + DV+T+T+ +  Y          ++ E M+  G  P+  T   +I+      +IE   +
Sbjct: 483 QCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACS 542

Query: 236 LVRTM-HKDMKTALPIY 251
           L R M  K +   + IY
Sbjct: 543 LFRQMASKGVNPGIVIY 559



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 5/204 (2%)

Query: 56  SDAHAV-FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM----HKSGLKPDTF 110
           SDA  +    M  LG TP   S+ +LL          +   +++ M     + G  PD  
Sbjct: 148 SDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVV 207

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
              +++N   R GQ +K   +   M     + +  TYN L++ Y   G  ++  G+F+ +
Sbjct: 208 SYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKM 267

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
               ++PDVVT+ + +    +        ++F+ M+  G  PD      L+   ++E  +
Sbjct: 268 CRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYL 327

Query: 231 EQVTTLVRTMHKDMKTALPIYFNL 254
            Q+  L+  M ++        FN+
Sbjct: 328 VQMHQLLDVMVRNGTQPDHYIFNI 351



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 76/174 (43%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H +  +  R G  P + S+  ++    + G + K   + ++M   G+ P+    N +L+ 
Sbjct: 191 HTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHG 250

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           Y   G+ ++   +   M +     D+ TYN L+    + G   +   +F S+  K  KPD
Sbjct: 251 YCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPD 310

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
              + + L  Y+ +    +  ++ + M+  G  PD     +LI A +    +++
Sbjct: 311 SSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDE 364



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 7/188 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN  VF   I+       +  A  +  EM   GI P       LL    K G V + + 
Sbjct: 413 TPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKN 472

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + + M +  ++ D     ++++ Y   G+ ++  ++L  M       +  TYN +IN Y 
Sbjct: 473 IFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYC 532

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G IE    LF+ + +K + P +V +++ L    + +      E++  MI  G     G
Sbjct: 533 KNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIG 592

Query: 216 TAKVLISA 223
           T  +++  
Sbjct: 593 TYNIILQG 600



 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 59/128 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA ++F +M   G+ P +  +  +L    +T  +A  + +   M K G+K      N 
Sbjct: 537 IEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNI 596

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    +    +    +   +    +     T+NI+I+   +GG  ++ + LF SL A+ 
Sbjct: 597 ILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARG 656

Query: 175 LKPDVVTW 182
           L P+VVT+
Sbjct: 657 LVPNVVTY 664


>gi|302763321|ref|XP_002965082.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
 gi|300167315|gb|EFJ33920.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
          Length = 731

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 43  TPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           TP+L+  +   Y     F+DA  VFE M++ G +P   S   L+    K   +   + V+
Sbjct: 437 TPSLYNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSLIQLLCKGRLLEILQRVL 496

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
             +  +G KP     +S+++ YG +G+  + E V   M      AD+  Y+ L+N Y   
Sbjct: 497 VLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEA 556

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           GF  + +    SL A    PD + +TS +  YS   L     +I+EE+  +   PD   A
Sbjct: 557 GFAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLIAEAEKIYEEI--SRLSPDVFAA 614

Query: 218 KVLISACSSEDQIEQVTTLVRTMHKDM----KTALPIYFNLYGEKG 259
             +++         +   L R M +      + A  +   LY E G
Sbjct: 615 NTMLNLYIKSGMFTEAEQLFRAMQRGKPGLNEVACTMMLKLYREAG 660



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A    + +K  G  P    +  ++  YS  G +A+ E +  ++ +  L PD F  N
Sbjct: 558 FAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLIAEAEKIYEEISR--LSPDVFAAN 615

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +MLNLY + G F + E++  AM++G    +     +++ +Y   G IE+   + + +  +
Sbjct: 616 TMLNLYIKSGMFTEAEQLFRAMQRGKPGLNEVACTMMLKLYREAGKIEQGLDVARVMSRR 675

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            L  D   +   +A Y +  L R  LE  +EM  AG  P   T
Sbjct: 676 FLITDARAFNVVIAMYVKAGLMREALEALKEMRRAGLVPSRST 718



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 83/163 (50%), Gaps = 1/163 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKG 138
           +++ Y +    A+   V  +M K+G++  T   N+M+++YG+ G+  + E ++T M ++ 
Sbjct: 235 MISFYGEHAKFAEGSKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAELLVTNMKQRK 294

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               D++TYN LI +Y +   +E + G  + +    +  D VT+ + ++AY+   +  + 
Sbjct: 295 DCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSADQVTFRTLISAYAANNVVWKA 354

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             + +EM  +G   D     V+I+       + +  ++ R +H
Sbjct: 355 EALVQEMEGSGFLIDQAMYTVMIAMYVRARDVPKAESVFRFLH 397



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 6/167 (3%)

Query: 42  HTPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
             P  +  + S Y     F++   VF EM + G+  T  +   ++  Y K G   + E +
Sbjct: 227 ENPETYNTMISFYGEHAKFAEGSKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAELL 286

Query: 97  INQM-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +  M  +    PD    NS++ +Y +  + E +   L  M     +AD  T+  LI+ Y 
Sbjct: 287 VTNMKQRKDCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSADQVTFRTLISAYA 346

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
               + K E L Q +       D   +T  +A Y R +   +   +F
Sbjct: 347 ANNVVWKAEALVQEMEGSGFLIDQAMYTVMIAMYVRARDVPKAESVF 393



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 100/265 (37%), Gaps = 50/265 (18%)

Query: 20  SWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHML 79
           SW      Y ++  L N LL          +   Y+S       EM    + PT+ ++ +
Sbjct: 105 SWFQRQDNYEANVFLYNILLRTLGRAAKWELLQKYWS-------EMLGERVPPTIFTYSI 157

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME---------- 129
           L+  + + G   +       M +SG++PD  ++++ +NL  R G  E+ E          
Sbjct: 158 LVDVHGRAGMKDEAIRFYRHMIESGVEPDEVMVSTYMNLQRRFGDLEEAEKAFWGLFSEN 217

Query: 130 --------------------------------EVLTAMEKGSYAADISTYNILINIYGRG 157
                                           +V   M K        T+N +I++YG+ 
Sbjct: 218 LVDGTTKRPENPETYNTMISFYGEHAKFAEGSKVFAEMMKAGVELTTVTFNAMIHVYGKA 277

Query: 158 GFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           G   + E L  ++  ++   PDV T+ S +  Y +           E M D+G   D  T
Sbjct: 278 GRTREAELLVTNMKQRKDCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSADQVT 337

Query: 217 AKVLISACSSEDQIEQVTTLVRTMH 241
            + LISA ++ + + +   LV+ M 
Sbjct: 338 FRTLISAYAANNVVWKAEALVQEME 362


>gi|297790207|ref|XP_002863007.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297308804|gb|EFH39266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 842

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 4/183 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++  Y K+G + +      +M + G+ P T   N+M+++YG  GQF ++  ++  M K  
Sbjct: 304 MIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTM-KFH 362

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            A D  TYNILI+++ +   IE+    F+ +    LKPD V++ + L A+S +++ +   
Sbjct: 363 CAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRRMVKEAE 422

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY---FNLYG 256
           E+  EM D     D  T   L       + +E+  +  R +H     +   Y    + YG
Sbjct: 423 ELIAEMDDNDVEIDEYTQSALTRMYIEAEMLEKSWSWFRRVHVAGNMSSEGYSANIDAYG 482

Query: 257 EKG 259
           E+G
Sbjct: 483 ERG 485



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 7/188 (3%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            ++++EM R GI P   ++  L+  YSK G        + +M K G++PD      +L +
Sbjct: 207 QSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQM 266

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADIS------TYNILINIYGRGGFIEKMEGLFQSLPA 172
           Y +  +F+K EE           AD        TYN +I+ YG+ G I++    F+ +  
Sbjct: 267 YKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLE 326

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + + P  VT+ + +  Y     +     + + M    C PD  T  +LIS  +  + IE+
Sbjct: 327 EGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTM-KFHCAPDTRTYNILISLHTKNNDIER 385

Query: 233 VTTLVRTM 240
             T  + M
Sbjct: 386 AGTYFKEM 393



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 106/238 (44%), Gaps = 46/238 (19%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V++EM    I P +  + +L+ A++ TGNV +    +  M ++G+  ++ + NS++ 
Sbjct: 594 AEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIK 653

Query: 118 LYGRLGQFEKMEEV----LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           LY ++G  ++ E +    L +  +  Y  D+ T + + N+      + K E +F+S+  +
Sbjct: 654 LYTKVGYLDEAEAIYRKLLRSCNETQYP-DVYTSHCMNNLCSERSMVRKAEAIFESMKQR 712

Query: 174 R----------------------------------LKPDVVTWTSRLAAYSRKKLYRRCL 199
           R                                  +  D +++ S L  Y+    ++  +
Sbjct: 713 REANEFTFAMMLCMYKKNGRFEEATQIAKQMREMRILTDPLSYNSVLGLYALDGRFKEAV 772

Query: 200 EIFEEMIDAGCYPDGGTAK----VLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           E F+EM+ +G  PD  T K    +LI    S+  + ++  + +   K++K  L ++ +
Sbjct: 773 ETFKEMVSSGIQPDDSTFKSLGTILIKLGMSKKAVRKIEEIRK---KEIKRGLELWIS 827



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 13/209 (6%)

Query: 36  NFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           N L+  HT N  +         A   F+EMK  G+ P   S+  LL A+S    V + E 
Sbjct: 371 NILISLHTKNNDI-------ERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRRMVKEAEE 423

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST--YNILINI 153
           +I +M  + ++ D +  +++  +Y    + E +E+  +   +   A ++S+  Y+  I+ 
Sbjct: 424 LIAEMDDNDVEIDEYTQSALTRMYI---EAEMLEKSWSWFRRVHVAGNMSSEGYSANIDA 480

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG  G++ + E +F        K  V+ +   + AY   K   +  E+FE M+  G  PD
Sbjct: 481 YGERGYLSEAERVFICCQEVN-KRTVLEYNVMIKAYGISKSCEKACELFESMMSYGVTPD 539

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             T   L+   +S D  ++    +  M +
Sbjct: 540 KCTYNTLVQILASADMPDKAKCYLEKMRE 568



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A    E+M+  G       +  +++++ K G +   E V  +M +  ++PD  V   ++N
Sbjct: 559 AKCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLIN 618

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL---PAKR 174
            +   G  ++    + AM++     +   YN LI +Y + G++++ E +++ L     + 
Sbjct: 619 AFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNET 678

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             PDV T        S + + R+   IFE M
Sbjct: 679 QYPDVYTSHCMNNLCSERSMVRKAEAIFESM 709



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 91/211 (43%), Gaps = 11/211 (5%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           +L++   +  +  S     A  +FE M   G+TP   ++  L+   +      K +  + 
Sbjct: 505 VLEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLE 564

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M ++G   D     ++++ + +LGQ    EEV   M + +   D+  Y +LIN +   G
Sbjct: 565 KMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTG 624

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-------KKLYRRCLEIFEEMIDAGCY 211
            +++     +++    +  + V + S +  Y++       + +YR+ L    E      Y
Sbjct: 625 NVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNETQ----Y 680

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           PD  T+  + + CS    + +   +  +M +
Sbjct: 681 PDVYTSHCMNNLCSERSMVRKAEAIFESMKQ 711



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+FE MK+        +  ++L  Y K G   +   +  QM +  +  D    NS+L 
Sbjct: 702 AEAIFESMKQRREANEF-TFAMMLCMYKKNGRFEEATQIAKQMREMRILTDPLSYNSVLG 760

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LY   G+F++  E    M       D ST+  L  I  + G  +K     + +  K +K 
Sbjct: 761 LYALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILIKLGMSKKAVRKIEEIRKKEIKR 820

Query: 178 DVVTWTSRLAA 188
            +  W S L++
Sbjct: 821 GLELWISTLSS 831



 Score = 44.3 bits (103), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 77/172 (44%), Gaps = 9/172 (5%)

Query: 42  HTPNLFVFIFSIYFSDAHAVF----EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           ++ N+  +    Y S+A  VF    E  KR     T+  + +++ AY  + +  K   + 
Sbjct: 474 YSANIDAYGERGYLSEAERVFICCQEVNKR-----TVLEYNVMIKAYGISKSCEKACELF 528

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
             M   G+ PD    N+++ +       +K +  L  M +  Y +D   Y  +I+ + + 
Sbjct: 529 ESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYVSDCIPYCAVISSFVKL 588

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           G +   E +++ +    ++PDVV +   + A++     ++ +   E M +AG
Sbjct: 589 GQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAG 640


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 75/159 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +   +F EM  L I P + +   ++    K G V   E ++  M + G+ PD    N 
Sbjct: 264 WENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNM 323

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ YG  GQ ++  E+  +M   S   DI +YNILIN Y R   I++   + + +  K 
Sbjct: 324 IIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKG 383

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           LKP +VT    L         +     F+EM+ AG  PD
Sbjct: 384 LKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPD 422



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 91/178 (51%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M++    P  +++ +++ A+ K G +     ++N+M +  + PD F  +++++   +L Q
Sbjct: 204 MEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQ 263

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           +E +  +   M   +   ++ T+N +I+   + G +E  E + + +  K + PDV+T+  
Sbjct: 264 WENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNM 323

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  Y  +    R  EIF+ MI+    PD  +  +LI+  + + +I++   + R + +
Sbjct: 324 IIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQ 381



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 82/164 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++  EMK+  I P + ++  L+ A  K         +  +M    + P+    NS+++
Sbjct: 232 ATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVID 291

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ E  EE++  M +     D+ TYN++I+ YG  G +++   +F S+  K ++P
Sbjct: 292 GLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEP 351

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           D++++   +  Y+R+K     +++  E+   G  P   T  VL+
Sbjct: 352 DIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLL 395



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 86/185 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  V  E+ + G+ P++ +  +LL    + G     +   ++M  +G  PD +   ++
Sbjct: 370 DEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTL 429

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  Y + G  E+       +E+     +I  Y  +I+   + G ++K    F+ LP   L
Sbjct: 430 LGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGL 489

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV+T+T+ ++ Y ++ L     ++  +M D GC  D  T  V++      +++ ++  
Sbjct: 490 HPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKA 549

Query: 236 LVRTM 240
            +  +
Sbjct: 550 FLEEI 554



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+  +  +++N   + G  +K  ++L  ME+GS   +  TY I+I+ + + G ++    
Sbjct: 175 EPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATS 234

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L   +  K + PD+ T+++ + A  +   +     +F EMI    YP+  T   +I    
Sbjct: 235 LLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLC 294

Query: 226 SEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEKG 259
            E ++E    ++R M +       I +N+    YG +G
Sbjct: 295 KEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRG 332



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 36/243 (14%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +   M   G+ P + ++ +++  Y   G V +   + + M    ++PD    N ++
Sbjct: 301 DAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILI 360

Query: 117 NLYGR-----------------------------------LGQFEKMEEVLTAMEKGSYA 141
           N Y R                                   LG+ +  +     M    + 
Sbjct: 361 NGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHI 420

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            D+ T+  L+  Y + G +E+    F  L  +R   ++  +T+ +    +     +    
Sbjct: 421 PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHAT 480

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVA 261
           FE++   G +PD  T   +IS    E  +++   ++R M  +   A    +N+   +G  
Sbjct: 481 FEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVI-VRGFL 539

Query: 262 RSN 264
           RSN
Sbjct: 540 RSN 542



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 42  HTPNLFVF--IFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P+L+    +   YF      +A + F +++R      ++ +  ++    K G + K  
Sbjct: 419 HIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAH 478

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
               ++   GL PD     +M++ Y + G  ++ +++L  ME     AD  TYN+++  +
Sbjct: 479 ATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGF 538

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            R   + +M+   + +  K    +  T
Sbjct: 539 LRSNKVSEMKAFLEEIAGKSFSFEAAT 565



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/96 (20%), Positives = 52/96 (54%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AHA FE++  +G+ P + ++  +++ Y + G + + + ++ +M  +G   D    N ++ 
Sbjct: 477 AHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVR 536

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
            + R  +  +M+  L  +   S++ + +T  +L++I
Sbjct: 537 GFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDI 572



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/184 (17%), Positives = 73/184 (39%), Gaps = 6/184 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+EM   G  P + +H  LL  Y K G V +     +++ +     +  +  ++++
Sbjct: 407 AQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVID 466

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ +K       +       D+ TY  +I+ Y + G +++ + + + +       
Sbjct: 467 GLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLA 526

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+   +  + R           EE+       +  T ++L+      D I +  ++ 
Sbjct: 527 DNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLM------DIIAEDPSIT 580

Query: 238 RTMH 241
           R MH
Sbjct: 581 RKMH 584


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 87/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EM    I P + +  +L+ A  K GN+ + + ++  M K G+ PD    +S
Sbjct: 250 LKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSS 309

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  + +  K + V + M +   A    +YNI+IN  G+   +++   LF+ +  K 
Sbjct: 310 LMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKG 369

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD VT+ S +    +        ++ +EM + G   D  T   LI        I++  
Sbjct: 370 IAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAI 429

Query: 235 TLVRTM 240
            LV+ +
Sbjct: 430 ALVKKI 435



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 90/185 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A ++F+EM   GI P   ++  L+    K G ++    ++++MH +G+  D    NS+
Sbjct: 356 DEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSL 415

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +++  +    +K   ++  ++       + TYNILI+   +GG ++  + +FQ L  K  
Sbjct: 416 IDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGY 475

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             +  T+   +    ++ L+     +  +M + G  PD  T + +I A   +D+ E+   
Sbjct: 476 SVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEK 535

Query: 236 LVRTM 240
           L+R M
Sbjct: 536 LLREM 540



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 85/186 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M RLG+ P   S+ +++    K   V +   +  +M   G+ PDT   NS+++
Sbjct: 323 AKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLID 382

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +LG+     +++  M      ADI TYN LI++  +   I+K   L + +  + ++P
Sbjct: 383 GLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQP 442

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            + T+   +    +    +   ++F++++  G   +  T  ++I+    E    +   L+
Sbjct: 443 SMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLL 502

Query: 238 RTMHKD 243
             M  +
Sbjct: 503 SKMENN 508



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 79/185 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F ++ +LG  PT  +   L+      G + +     + +   G   D     +++N
Sbjct: 113 AFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLIN 172

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G+     ++L  +E      D+  YNI+IN   +   +     L+  +  KR+ P
Sbjct: 173 GLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISP 232

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+ S +  +      +    +F EM+     PD  T  +L+ A   +  I +   ++
Sbjct: 233 DVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNML 292

Query: 238 RTMHK 242
             M K
Sbjct: 293 AVMMK 297



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 72/155 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  + +EM   GI   + ++  L+    K  ++ K   ++ ++   G++P  +  N 
Sbjct: 390 ISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNI 449

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G+ +  ++V   +    Y+ +  TYNI+IN   + G   + E L   +    
Sbjct: 450 LIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNG 509

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           + PD VT+ + + A  RK    +  ++  EMI  G
Sbjct: 510 IIPDAVTYETIIRALFRKDENEKAEKLLREMIIRG 544



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/162 (18%), Positives = 73/162 (45%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++ +  K   V+    + ++M    + PD    NS++  +  +GQ ++   +   M   
Sbjct: 204 IIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLK 263

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +   D+ T++IL++   + G I + + +   +  + + PDVVT++S +  Y       + 
Sbjct: 264 NINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKA 323

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             +F  M   G  P   +  ++I+       +++  +L + M
Sbjct: 324 KHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEM 365



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 69/166 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +   M + G+ P + ++  L+  Y     V K + V + M + G+ P     N M+N
Sbjct: 288 AKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMIN 347

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G++   ++   +   M     A D  TYN LI+   + G I     L   +    +  
Sbjct: 348 GLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPA 407

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D++T+ S +    +     + + + +++ D G  P   T  +LI  
Sbjct: 408 DILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDG 453



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 55/122 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A A+ +++K  GI P+M ++ +L+    K G +   + V   +   G   + +  N
Sbjct: 424 HIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYN 483

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M+N   + G F + E +L+ ME      D  TY  +I    R    EK E L + +  +
Sbjct: 484 IMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIR 543

Query: 174 RL 175
            L
Sbjct: 544 GL 545


>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 917

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA+ VF +M R G  P    +  L+  + K G + +   ++ +M+K GL PD F +N +
Sbjct: 620 TDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMI 679

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G+ +   E    M +   + DI TYN LI+ Y +   +   + L   +     
Sbjct: 680 ICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGW 739

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +PD+ T+  R+  Y   +   R + I EE+I  G  P+  T   +I+A
Sbjct: 740 EPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINA 787



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 82/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +++ EMK  G+ P   +    +     +G +     V + M + G  P+ FV NS++ 
Sbjct: 587 AESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIG 646

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + ++G+  +  +++  M K     DI T N++I    + G ++     F  +    L P
Sbjct: 647 GFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSP 706

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + +  Y +        ++  +M D+G  PD  T  + I    +  +I +   ++
Sbjct: 707 DIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMIL 766

Query: 238 RTM 240
             +
Sbjct: 767 EEL 769



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 77/175 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+E++ +G++     + ++++ Y K  ++++   +  +M    + PD    N+++ 
Sbjct: 377 ARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVA 436

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G+ E    +L  +       D S  ++ +      G  ++   L ++L  K + P
Sbjct: 437 GHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPP 496

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            VV + S +AAY    L  R    +  M+  G  P   T   L+ +   +  +++
Sbjct: 497 SVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDE 551



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 2/200 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  + E +   GI P++ +   ++ AY   G   +       M K GL P +   +S
Sbjct: 479 YDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSS 538

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    R G  ++    L  M    +      + +L++ Y R G +   E L+  +  + 
Sbjct: 539 LLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRG 598

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD V + + +       L     ++F +M+  G  P+      LI       ++ +  
Sbjct: 599 VFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEAL 658

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            LVR M+K  +  LP  F +
Sbjct: 659 KLVREMNK--RGLLPDIFTV 676



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 80/205 (39%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+ S    +A  +  +M+ +G+TP   +  +L     + G+      +   + + G  P+
Sbjct: 228 FVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPN 287

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            F  N ++  + R G     E +L  M K     D+ +YNI+IN     G       L  
Sbjct: 288 NFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLN 347

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +     KP + T+ + + A+ ++       + F+E+ D G   +     ++IS      
Sbjct: 348 LMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKAR 407

Query: 229 QIEQVTTLVRTMHKDMKTALPIYFN 253
            I Q   L   M         I FN
Sbjct: 408 DISQANLLFEEMRTKDIVPDGITFN 432



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 1/175 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A     +M   G   T  +  +LL  Y + G V   E + N+M   G+ PD     +
Sbjct: 549 LDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAA 608

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +N     G      +V + M +  +  +   YN LI  + + G + +   L + +  + 
Sbjct: 609 FINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRG 668

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
           L PD+ T    +    ++   +  +E F +M   G  PD  T   LI   C + D
Sbjct: 669 LLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFD 723



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 7/205 (3%)

Query: 43  TPN----LFVFIFSIYFSDAHAV---FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN      +F   I   D  AV   F ++ R G  P   +  LL+  + + G     E 
Sbjct: 250 TPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEA 309

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +++ M K   +PD +  N ++N     GQ      +L  M +      I+T+  +I+ + 
Sbjct: 310 LLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFC 369

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +E     F  +    L  + + +   ++ Y + +   +   +FEEM      PDG 
Sbjct: 370 KEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGI 429

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   L++      + E    L+R +
Sbjct: 430 TFNTLVAGHYRYGKEEDGNRLLRDL 454



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 74/165 (44%), Gaps = 8/165 (4%)

Query: 27  PYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           P P++F   N L+L+     +  I         A+   M +    P + S+ +++ A   
Sbjct: 284 PCPNNFTF-NLLILEFCRKGWTRI-------GEALLHVMGKFRCEPDVYSYNIVINANCL 335

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
            G  +    ++N M ++G KP      ++++ + + G  E   +    +E    + +   
Sbjct: 336 KGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIV 395

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           YNI+I+ Y +   I +   LF+ +  K + PD +T+ + +A + R
Sbjct: 396 YNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYR 440



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 63/154 (40%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A+ +FEEM+   I P   +   L+  + + G       ++  +  SGL  D+ + +  
Sbjct: 410 SQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVT 469

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +      G++++  ++L  +        +  +N +I  YG  G  E+    +  +    L
Sbjct: 470 VAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGL 529

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P   T +S L +  RK           +MID G
Sbjct: 530 TPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKG 563


>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
           succulentifolia]
          Length = 382

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F DA ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 40  LVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFA 99

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 100 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 159

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 160 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 219

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 220 TIISIWGKVGKLDRAAMLFQKLR 242



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 79/151 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G  P + ++  ++  + K         +I++M  +G+ P+T   ++
Sbjct: 21  YSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYST 80

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 81  LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 171



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 128 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 187

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 188 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 247

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 248 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 303

Query: 237 VR 238
            R
Sbjct: 304 FR 305



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 72  TPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 131

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 132 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 191

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 192 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 251

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 252 LYQTMIVA 259



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 39/223 (17%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 161 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 220

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 221 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 277

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 278 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGXVKDITVFERMIHLFSKYKKYGNVV 336

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           E+F++M   G +PD     ++++A     + ++   +   M +
Sbjct: 337 EVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQE 379



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/135 (19%), Positives = 58/135 (42%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D  + ++++ L  +L  + K   + + +++  +  D+  YN +IN++G+         L 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLI 63

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             +    + P+  ++++ L  Y   K +   L +F EM +  C  D  T  ++I      
Sbjct: 64  SEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 228 DQIEQVTTLVRTMHK 242
              ++   L   M K
Sbjct: 124 GMAKEADKLFWGMRK 138



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 199 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 258

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 259 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGXVK 314

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 315 -DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDV 373

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 374 YMEMQEVGC 382


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 5/186 (2%)

Query: 55  FSDAHAVFEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +  A  +F  M  K+   TP + +   ++  YS  G V  CE   N M   GLKP+    
Sbjct: 307 YDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSY 366

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N+++  Y   G   +       +++  +  DI +Y  L+N YGR     K   +F  +  
Sbjct: 367 NALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKR 426

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQ 229
            +LKP++V++ + + AY    L    ++I  EM   G  P+  +   L++A   CS + +
Sbjct: 427 NKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVK 486

Query: 230 IEQVTT 235
           I+ V T
Sbjct: 487 IDTVLT 492



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 35/219 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+ MKR  + P + S+  L+ AY   G +A    ++ +M + G++P+   I ++L 
Sbjct: 417 ARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLA 476

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR  +  K++ VLTA E      +   YN  I      G  +K  GL++S+  K++K 
Sbjct: 477 ACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKT 536

Query: 178 DVVTWT-----------------------------------SRLAAYSRKKLYRRCLEIF 202
           D VT+T                                   S + AYS++         F
Sbjct: 537 DSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTF 596

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             M  +GCYPD  T   ++ A ++ +  E+   L   M 
Sbjct: 597 NLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEME 635



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  F     +S A + FE MK   I P   +  +++    K     K   + N
Sbjct: 256 LVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFN 315

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   KS   PD     S+++LY   GQ E  E     M       +I +YN LI  Y  
Sbjct: 316 SMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAA 375

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +    F  +     +PD+V++TS L AY R +   +  +IF+ M      P+  +
Sbjct: 376 RGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVS 435

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   +     ++R M ++
Sbjct: 436 YNALIDAYGSNGLLADAIKILREMEQE 462



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 96/214 (44%), Gaps = 3/214 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++AH  F E+K+ G  P + S+  LL AY ++    K   + ++M ++ LKP+    N++
Sbjct: 380 NEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNAL 439

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ YG  G      ++L  ME+     ++ +   L+   GR     K++ +  +   + +
Sbjct: 440 IDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGI 499

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           K + V + + + +      Y + + +++ M       D  T  VLIS C    +  +  +
Sbjct: 500 KLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALS 559

Query: 236 LVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYI 269
               M + M   LP+   +Y     A S  GQ +
Sbjct: 560 F---MEEIMHLKLPLSKEVYSSAICAYSKQGQIV 590



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++     +  G+  +M +   KPD    N+++N +GR GQ+     ++  M + 
Sbjct: 156 MMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRA 215

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     STYN LIN  G  G  ++   + + +    + PD+VT    L+A+     Y + 
Sbjct: 216 AIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKA 275

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
           L  FE M      PD  T  ++I       Q ++   +  +M +      P
Sbjct: 276 LSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTP 326



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 80/177 (45%), Gaps = 2/177 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+     P ++++  ++ A+ + G       +++ M ++ + P     N+++N
Sbjct: 170 ARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLIN 229

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G  G +++   V   M +     D+ T+NI+++ +  G    K    F+ +    ++P
Sbjct: 230 ACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRP 289

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIEQ 232
           D  T    +    + + Y + +EIF  M +  + C PD  T   +I   S   Q+E 
Sbjct: 290 DTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVEN 346



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 123 GQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           G  E    V   ++ + +Y A    YN++I ++ R    ++  GLF  +   R KPDV T
Sbjct: 129 GSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVET 188

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + + A+ R   +R  + I ++M+ A   P   T   LI+AC S    ++   + + M 
Sbjct: 189 YNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMT 248

Query: 242 KD 243
           ++
Sbjct: 249 EN 250



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 1/193 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKP 107
            + S+  SD   V   + R       K+   L+   ++ G++  C  V   + ++   + 
Sbjct: 90  LVLSLNLSDDDDVDGLLNRWVGRFARKNFPFLIKELTQRGSIEHCNRVFRWLKNQKNYRA 149

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
              + N M+ L+ R  + ++   +   M++     D+ TYN +IN +GR G       + 
Sbjct: 150 RNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIM 209

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             +    + P   T+ + + A      ++  L + ++M + G  PD  T  +++SA  S 
Sbjct: 210 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSG 269

Query: 228 DQIEQVTTLVRTM 240
            Q  +  +    M
Sbjct: 270 AQYSKALSYFELM 282



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 6/162 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A +  EE+  L +  + + +   + AYSK G + + E   N M  SG  PD     +
Sbjct: 554 YGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTA 613

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+ Y     +EK   +   ME  S   D      L+  + +GG   ++  L +S+  K 
Sbjct: 614 MLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKE 673

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFE------EMIDAGC 210
           +      +   ++A S  + +R  +++ +       +I +GC
Sbjct: 674 IPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPVISSGC 715



 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 4/196 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +++ M++  I     ++ +L++   K     +    + ++    L     V +S
Sbjct: 519 YDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSS 578

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +  Y + GQ  + E     M+      D+ TY  +++ Y      EK   LF+ + A  
Sbjct: 579 AICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASS 638

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +K D +   + + ++++     R L + E M +            ++SACS    I Q  
Sbjct: 639 IKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACS----ILQDW 694

Query: 235 TLVRTMHKDMKTALPI 250
                M K ++ +LP+
Sbjct: 695 RTAVDMIKYIEPSLPV 710



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 67/158 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A+A+FEEM+   I     +   L+ +++K G   +   +   M +  +     +   
Sbjct: 624 WEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFE 683

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++    L  +    +++  +E           N  ++  G+ G IE M  LF  + A  
Sbjct: 684 MVSACSILQDWRTAVDMIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASG 743

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              ++ T++  L        +R+ LE+ + M DAG +P
Sbjct: 744 ADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHP 781


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 92/195 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+FEE    G+ P++  +  L+   S+ G V K   ++N M K G+ PD +  N ++N
Sbjct: 347 ALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVIN 406

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G       +L A     Y  DI T+N LI+ Y +   ++   G+  S+ +  + P
Sbjct: 407 GLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTP 466

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV+T+ S L    +       +E F+ +++ GC P+  T  +LI +     ++ +   L+
Sbjct: 467 DVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLL 526

Query: 238 RTMHKDMKTALPIYF 252
             +        P+ F
Sbjct: 527 EEIRNRGLIPDPVSF 541



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 92/206 (44%), Gaps = 5/206 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M + G++P + ++ L++    K G V+    ++N     G  PD F  N++++
Sbjct: 382 ALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLID 441

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +  + +    +L +M       D+ TYN ++N   +    E +   F+ +  K   P
Sbjct: 442 GYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLP 501

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+   + +  + +     L++ EE+ + G  PD  +   +IS   +   +++   L 
Sbjct: 502 NIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLF 561

Query: 238 RTMHKDMK-----TALPIYFNLYGEK 258
           R M +  +         I  N + EK
Sbjct: 562 RRMEQQYRICHTVATYNIMINAFSEK 587



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 7/197 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A+ +F +M RLGI P + +   L+    K G++ + E ++N++ K+G+ P+ F  N
Sbjct: 196 YQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFN 255

Query: 114 SMLNLYGRLGQFE-------KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
             +    R G  E       + E  L  M       D  TYN +I  Y + G I+    +
Sbjct: 256 IFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRI 315

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
            +    K   PD  T+ S +    +       L +FEE +  G  P       LI   S 
Sbjct: 316 LKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQ 375

Query: 227 EDQIEQVTTLVRTMHKD 243
           +  + +   L+  M K+
Sbjct: 376 QGLVLKALQLMNDMSKE 392



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 81/177 (45%), Gaps = 7/177 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-------NVAKCEGVINQMHKSGLK 106
           +  +   +  ++ + G+ P + +  + +    + G        V + E  +++M   GL+
Sbjct: 231 HLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLE 290

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           PD F  N+++  Y ++G+ +    +L   +   +  D  TY  LI    + G I+    L
Sbjct: 291 PDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALAL 350

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           F+    K LKP +V + + +   S++ L  + L++  +M   G  PD  T  ++I+ 
Sbjct: 351 FEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVING 407



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 4/180 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA  + ++ K  G  P   ++  L+    + G++     +  +    GLKP   + N++
Sbjct: 310 QDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTL 369

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G   K  +++  M K   + DI TYN++IN   + G +     L  +  AK  
Sbjct: 370 IKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGY 429

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS----ACSSEDQIE 231
            PD+ T+ + +  Y ++      + I + M   G  PD  T   +++    A   ED +E
Sbjct: 430 LPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVME 489



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA+ +       G  P + +   L+  Y K   +    G+++ M   G+ PD    NS+
Sbjct: 415 SDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSI 474

Query: 116 LNLYGRLGQFEK-MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           LN   +  + E  ME     MEKG    +I TYNILI    +   + +   L + +  + 
Sbjct: 475 LNGLCKAAKPEDVMETFKMIMEKGCL-PNIITYNILIESLCKARKVTEALDLLEEIRNRG 533

Query: 175 LKPDVVTWTSRLAAYSRK-------KLYRR-----------------------------C 198
           L PD V++ + ++ +          +L+RR                              
Sbjct: 534 LIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMA 593

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISA 223
            ++F EM D GC PD  T +V+I  
Sbjct: 594 QKLFHEMGDKGCDPDSYTYRVMIDG 618



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 100/255 (39%), Gaps = 45/255 (17%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT--------------------GNVAKC 93
           YF+ AH V+  MK  GI P + +  + + ++ +T                      V  C
Sbjct: 126 YFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYC 185

Query: 94  EGV---------------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
             +                N+M + G+ P     N ++++  + G  ++ E++L  + K 
Sbjct: 186 TVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKN 245

Query: 139 SYAADISTYNILINIYGRGGFIE-------KMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
               ++ T+NI I    R G +E       + E     +  K L+PD  T+ + +  YS+
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSK 305

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
               +    I ++    G  PD  T   ++I  C   D    +      + K +K ++ +
Sbjct: 306 VGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVL 365

Query: 251 YFNLYGEKGVARSNL 265
           Y  L   KG+++  L
Sbjct: 366 YNTLI--KGLSQQGL 378



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/186 (17%), Positives = 78/186 (41%), Gaps = 1/186 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            D    F+ +   G  P + ++ +L+ +  K   V +   ++ ++   GL PD     ++
Sbjct: 485 EDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTV 544

Query: 116 LNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +   G  ++  ++   ME+       ++TYNI+IN +     ++  + LF  +  K 
Sbjct: 545 ISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKG 604

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD  T+   +  + +        +   + I+ G  P   T   +I+    + ++ +  
Sbjct: 605 CDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAV 664

Query: 235 TLVRTM 240
            +V  M
Sbjct: 665 GIVHLM 670



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +++M N YGR G+ ++  +V   M+  +    I +YN ++NI    G+  +   ++  + 
Sbjct: 80  VSAMRN-YGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMK 138

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED-QI 230
            + + PDV T+T R+ ++ R K     L +   M   GC  +      +IS    E+ Q+
Sbjct: 139 HEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQV 198

Query: 231 E 231
           E
Sbjct: 199 E 199


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 4/208 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  + EEM+  G+  T+ +H +++    K G +    G +N+M   GL PD    N++
Sbjct: 362 SDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTL 421

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G   K   ++  M +     D  T N ++    +    E+ +GL QS P +  
Sbjct: 422 IHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGF 481

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI-EQVT 234
            PD V++ + +AAY ++      L +++EMI+    P   T   LI   S   ++ E + 
Sbjct: 482 MPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAID 541

Query: 235 TLVRTMHKDM---KTALPIYFNLYGEKG 259
            L   M K +    T   I  + Y ++G
Sbjct: 542 KLNELMEKGLVPDDTTYNIIIHAYCKEG 569



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 50  IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + + YF +     A  +++EM    +TP++ ++  L+   S+ G + +    +N++ + G
Sbjct: 491 VMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKG 550

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           L PD    N +++ Y + G  E   +    M + S+  D+ T N L+N     G ++K  
Sbjct: 551 LVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKAL 610

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            LF+S   K  K DV+T+ + +    +       L  F +M   G  PD  T  V++SA 
Sbjct: 611 KLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSAL 670

Query: 225 SSEDQIEQVTTLVRTM 240
           S   + E+   ++  +
Sbjct: 671 SEAGRTEEAQNMLHKL 686



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 9/217 (4%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           +P+H+    F LL HT            +DA +    M+  G++P   ++  LL A+ + 
Sbjct: 201 HPNHY---TFNLLVHT-----HCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRK 252

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G + +   ++ +M K G+ P     N++++ Y RLG  ++  +V+ AM    +  D+ TY
Sbjct: 253 GMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTY 312

Query: 148 NILINIYGRGGFIEKMEGLFQSLPA-KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           N+L     + G +++   L   +     L PDVVT+ +   A  + +     L + EEM 
Sbjct: 313 NVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMR 372

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + G      T  ++I     + ++E     +  M  D
Sbjct: 373 EKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADD 409



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 86/172 (50%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
             +M   G+ P + ++  L+ A+ K GN+AK   ++++M + GLK DTF +N++L    +
Sbjct: 403 LNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCK 462

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
             ++E+ + +L +  +  +  D  +Y  ++  Y +    E    L+  +  K+L P + T
Sbjct: 463 EKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSIST 522

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           + + +   SR    +  ++   E+++ G  PD  T  ++I A   E  +E  
Sbjct: 523 YNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENA 574



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 1/165 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F  +  L + P   +  LL+  +   G +A     ++ M   GL PD    N++LN + 
Sbjct: 191 AFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHC 250

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G   +   +L  M+K   A    TYN L++ Y R G+I++   + +++ A   +PD+ 
Sbjct: 251 RKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLW 310

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-YPDGGTAKVLISAC 224
           T+    A   +         + +EM   G   PD  T   L  AC
Sbjct: 311 TYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADAC 355



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN---L 118
             E+   G+ P   ++ +++ AY K G++       N+M ++  KPD    N+++N   L
Sbjct: 543 LNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCL 602

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
            G+L +  K+ E  + +EKG    D+ TYN LI    + G ++     F  + A+ L+PD
Sbjct: 603 NGKLDKALKLFE--SWVEKGK-KVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPD 659

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             T+   L+A S          +  ++ ++G      ++ +L    SS D+ E
Sbjct: 660 AFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKP--SSVDEAE 710



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 2/178 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  + +   + G  P   S+  ++ AY K  N      + ++M +  L P     N+
Sbjct: 466 YEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNT 525

Query: 115 MLNLYGRLGQF-EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++    R+G+  E ++++   MEKG    D +TYNI+I+ Y + G +E        +   
Sbjct: 526 LIKGLSRMGRLKEAIDKLNELMEKG-LVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVEN 584

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             KPDVVT  + +          + L++FE  ++ G   D  T   LI     +  ++
Sbjct: 585 SFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVD 642



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 84/186 (45%), Gaps = 3/186 (1%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGV--INQMHKSGLKPDTFVINSMLNLYGRLG 123
           +R+ + P++++   +L+A +++ + +    +     +    L P+ +  N +++ +   G
Sbjct: 159 RRVRVRPSLQAANAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKG 218

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
                   L+ M+    + D  TYN L+N + R G + +   L   +    + P   T+ 
Sbjct: 219 TLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYN 278

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + ++AY+R    ++  ++ E M   G  PD  T  VL +      ++++   L   M + 
Sbjct: 279 TLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMER- 337

Query: 244 MKTALP 249
           + T LP
Sbjct: 338 LGTLLP 343


>gi|225425981|ref|XP_002269531.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Vitis vinifera]
          Length = 603

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 98/189 (51%), Gaps = 4/189 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V++E+   G  P   ++  ++  Y +    +K E V ++M K G        +SM+ 
Sbjct: 383 AAKVYDELILQGCEPGQVTYASIINVYCRMELYSKAEMVFSEMEKKGFNKCVVAYSSMVV 442

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YG+ G+  +   ++  M++     ++  YN L++++GR   + ++E L++ +  K++ P
Sbjct: 443 MYGKTGRLREAMRLVAKMKERGCEPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVP 502

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++TS ++AYS+   +  C+  + E    G   D   A +++   S   +++++  L+
Sbjct: 503 DRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRVIAGIMVGIFSKSGRVDELVKLL 562

Query: 238 RTMHKDMKT 246
               +DMKT
Sbjct: 563 ----QDMKT 567



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 60/107 (56%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A  VF EM++ G    + ++  ++  Y KTG + +   ++ +M + G +P+ +V NS
Sbjct: 415 YSKAEMVFSEMEKKGFNKCVVAYSSMVVMYGKTGRLREAMRLVAKMKERGCEPNVWVYNS 474

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           +++++GR+    ++E++   M++     D  +Y  +I+ Y + G  E
Sbjct: 475 LMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFE 521



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/207 (18%), Positives = 83/207 (40%), Gaps = 38/207 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK---------------------- 92
           FS   AV++ MK  G+ P  +S+  ++ AY K  +  K                      
Sbjct: 202 FSSTIAVYDRMKSAGVVPNSESYYRIMEAYIKIRDYEKVVTLFQEFESRKIDSSPFSTQI 261

Query: 93  ----CEGV------------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
               CE +               M K G+  D+ V +S++  +  + + +  EE+    E
Sbjct: 262 YRILCESLGKMGRAFEALEFFRDMTKKGILEDSAVYSSLICSFASIREVKVAEELFREAE 321

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           +     D   +  L+ +Y   G +E+   + +++    ++     + + +  +++K+  R
Sbjct: 322 EKKILRDPEVFLKLVLMYVEEGLMERTLEIVKAMKNVEIRVSDCIFCAIVNGFAKKRGLR 381

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISA 223
              ++++E+I  GC P   T   +I+ 
Sbjct: 382 AAAKVYDELILQGCEPGQVTYASIINV 408



 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 64/153 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F +M + GI      +  L+ +++    V   E +  +  +  +  D  V   ++
Sbjct: 277 EALEFFRDMTKKGILEDSAVYSSLICSFASIREVKVAEELFREAEEKKILRDPEVFLKLV 336

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +Y   G  E+  E++ AM+          +  ++N + +   +     ++  L  +  +
Sbjct: 337 LMYVEEGLMERTLEIVKAMKNVEIRVSDCIFCAIVNGFAKKRGLRAAAKVYDELILQGCE 396

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           P  VT+ S +  Y R +LY +   +F EM   G
Sbjct: 397 PGQVTYASIINVYCRMELYSKAEMVFSEMEKKG 429



 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 47/102 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
              +++EMKR  + P   S+  +++AYSK G+   C    ++   +G   D  +   M+ 
Sbjct: 488 VEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRVIAGIMVG 547

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           ++ + G+ +++ ++L  M+      D   Y   +N     G 
Sbjct: 548 IFSKSGRVDELVKLLQDMKTEGTGLDERLYRSALNALRDAGL 589


>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
          Length = 616

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 5/192 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-----LKPDTF 110
           S A  V   M   GI PT  ++ ++L  + + G +        QM K G      KPD  
Sbjct: 216 SRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVV 275

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
              +M++  G  GQ EK  +V   M K   A  ++TYN LI +  + G +E    +F  +
Sbjct: 276 SYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGM 335

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
             K   P+VVT+T  +          R L++ E M + GC P   T  VLI     E ++
Sbjct: 336 LVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEM 395

Query: 231 EQVTTLVRTMHK 242
           E+   L   M K
Sbjct: 396 EKGLDLFEKMSK 407



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 16/205 (7%)

Query: 41  QHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           Q  P+L V +F +    +H V +++      P   S   LL A SK+ +  K   ++  +
Sbjct: 142 QRRPDLAVRLF-LSLHRSHRVAQDL------PLFNS---LLDALSKSRHAGKAASLVRAL 191

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            +    PD    N++ + + R+    +  +VL  M +   A   +TYNI++  + R G +
Sbjct: 192 EQR-FTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQL 250

Query: 161 EKMEGLFQSLPAK-----RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
                 F  +  +       KPDVV++T+ +          +  ++F+EM   GC P   
Sbjct: 251 RHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVA 310

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   LI     +  +E   T+   M
Sbjct: 311 TYNALIQVICKKGNVEDAVTVFDGM 335



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 11/147 (7%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEV-----LTAMEKGSYAADISTYNILINIYG 155
           H+    P TF I     L+ RL   ++  ++     L+       A D+  +N L++   
Sbjct: 122 HRLAFTPRTFPI-----LFERLAVSQRRPDLAVRLFLSLHRSHRVAQDLPLFNSLLDALS 176

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +     K   L ++L  +R  PDVVT+ +    + R K   R L++   M+++G  P   
Sbjct: 177 KSRHAGKAASLVRAL-EQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKT 235

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  +++       Q+         M K
Sbjct: 236 TYNIILKGFFRAGQLRHAWDFFLQMKK 262


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EM + G+     ++ +L+    + G+    + +  +M   G+ P+    N++L+   
Sbjct: 418 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ EK   V   +++      I TYNI+I    + G +E    LF +L  K +KPDVV
Sbjct: 478 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVV 537

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + ++ + RK        +F+EM + G  P+ G    LI A   +   E    L++ M
Sbjct: 538 AYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597

Query: 241 H 241
            
Sbjct: 598 R 598



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 91/190 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  +F+EM+  GI P + ++  L++     G  +    +++ M +  + PD F  +
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + + G+  + E++   M K S    I TY+ LIN +     +++ + +F+ + +K
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDVVT+ + +  + + K     +E+F EM   G   +  T  +LI         +  
Sbjct: 391 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 450

Query: 234 TTLVRTMHKD 243
             + + M  D
Sbjct: 451 QEIFKEMVSD 460



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/197 (17%), Positives = 89/197 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M++  + P +  +  ++    K  ++     +  +M   G++P+    +S+++
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++     +L+ M +     D+ T++ LI+ + + G + + E L+  +  + + P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            +VT++S +  +          ++FE M+   C+PD  T   LI       ++E+   + 
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419

Query: 238 RTMHKDMKTALPIYFNL 254
           R M +       + +N+
Sbjct: 420 REMSQRGLVGNTVTYNI 436



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/185 (18%), Positives = 83/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A A+ + M   G  P + ++ +++    K G+      ++N+M +  L+P   + N++
Sbjct: 203 SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTI 262

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +    +    +   ME      ++ TY+ LI+     G       L   +  +++
Sbjct: 263 IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 322

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+++ + A+ ++       ++++EM+     P   T   LI+     D++++   
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 382

Query: 236 LVRTM 240
           +   M
Sbjct: 383 MFEFM 387



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 35/220 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AV  +M +LG  P + +   LL  Y  +  +++   +++QM  +G +P+T   N++++
Sbjct: 135 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 194

Query: 118 ----------------------------LYG-------RLGQFEKMEEVLTAMEKGSYAA 142
                                        YG       + G  +    +L  ME+G    
Sbjct: 195 GLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEP 254

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
            +  YN +I+   +   ++    LF+ +  K ++P+VVT++S ++       +     + 
Sbjct: 255 GVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLL 314

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +MI+    PD  T   LI A   E ++ +   L   M K
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 75/188 (39%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA A+F EM +    P++     LL+A +K         +  QM   G+  + +  + 
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + R  Q      VL  M K  Y  +I T + L+N Y     I +   L   +    
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +P+ VT+ + +            + + + M+  GC PD  T  V+++        +   
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 235 TLVRTMHK 242
            L+  M +
Sbjct: 242 NLLNKMEQ 249



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/203 (17%), Positives = 86/203 (42%), Gaps = 9/203 (4%)

Query: 39  LLQHTPNLFVFIFSIYFS---------DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           +++   N  VF FS             +A  +++EM +  I P++ ++  L+  +     
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           + + + +   M      PD    N+++  + +  + E+  EV   M +     +  TYNI
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           LI    + G  +  + +F+ + +  + P+++T+ + L    +     + + +FE +  + 
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496

Query: 210 CYPDGGTAKVLISACSSEDQIEQ 232
             P   T  ++I       ++E 
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVED 519


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P+ F +   I       + + AH +F EM   G  P + ++ +++   +K  N      
Sbjct: 481 SPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALE 540

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M  +G +PD    + ++ + G  G  E+ E + T M++ ++  D   Y +L++++G
Sbjct: 541 LYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWG 600

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +EK    +Q++    L P+V T  S L+A+ R         + + M+  G  P   
Sbjct: 601 KVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQ 660

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 661 TYTLLLSCCT 670



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 101/209 (48%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + +  EM R G  P + ++  L+ +Y +   + +   V ++M ++G +PD     +
Sbjct: 395 FGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCT 454

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +    +   M++   + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 455 LIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQG 514

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +A  ++ + Y   LE++ +M +AG  PD  T  +++        +E+  
Sbjct: 515 CVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAE 574

Query: 235 TLVRTM-HKDMKTALPIY---FNLYGEKG 259
            +   M  K+     P+Y    +L+G+ G
Sbjct: 575 AIFTEMKRKNWVPDEPVYGLLVDLWGKVG 603



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 35/222 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y ++A +VF+ M+  G  P   ++  L+  ++K G +     +  +M ++ L PDTF  +
Sbjct: 429 YLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYS 488

Query: 114 SMLNLYGRLGQFEKME-----------------------------------EVLTAMEKG 138
            ++N  G+ G                                         E+   M+  
Sbjct: 489 VIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNA 548

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            +  D  TY+I++ + G  G +E+ E +F  +  K   PD   +   +  + +     + 
Sbjct: 549 GFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKS 608

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            E ++ M++AG  P+  T   L+SA     ++     L+++M
Sbjct: 609 WEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSM 650



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 62/121 (51%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           ++G K D     +M+ + GR  QF  + ++L  M +     ++ TYN LI+ YGR  ++ 
Sbjct: 372 QTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLN 431

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F  +     +PD VT+ + +  +++       L ++++M +A   PD  T  V+I
Sbjct: 432 EAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVII 491

Query: 222 S 222
           +
Sbjct: 492 N 492


>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
 gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
          Length = 731

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 43  TPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           TP+L+  +   Y     F+DA  VFE M++ G +P   S   L+    K   +   + V+
Sbjct: 437 TPSLYNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSLIQLLCKGRLLEILQRVL 496

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
             +  +G KP     +S+++ YG +G+  + E V   M      AD+  Y+ L+N Y   
Sbjct: 497 VLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEA 556

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           GF  + +    SL A    PD + +TS +  YS   L     +I+EE+  +   PD   A
Sbjct: 557 GFAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLTAEAEKIYEEI--SRLSPDVFAA 614

Query: 218 KVLISACSSEDQIEQVTTLVRTMHKDM----KTALPIYFNLYGEKG 259
             +++         +   L R M +      + A  +   LY E G
Sbjct: 615 NTMLNLYIKSGMFTEAEQLFRAMQRGKPGLNEVACTMMLKLYREAG 660



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 2/163 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A    + +K  G  P    +  ++  YS  G  A+ E +  ++ +  L PD F  N
Sbjct: 558 FAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLTAEAEKIYEEISR--LSPDVFAAN 615

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +MLNLY + G F + E++  AM++G    +     +++ +Y   G IE+   + + +  +
Sbjct: 616 TMLNLYIKSGMFTEAEQLFRAMQRGKPGLNEVACTMMLKLYREAGKIEQGLDVARVMSRR 675

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            L  D   +   +A Y +  L R  LE  +EM  AG  P   T
Sbjct: 676 FLITDARAFNGVIAMYVKAGLMREALEALKEMRRAGLVPSRST 718



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           E +++   K    P+TF  N+M++ YG   +F +  +V   M K        T+N +I++
Sbjct: 216 ENLVDGTTKRPENPETF--NTMISFYGEHAKFAEASKVFAEMMKAGVELTTVTFNAMIHV 273

Query: 154 YGRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           YG+ G   + E L   +  ++   PDV T+ S +  Y +           E M D+G  P
Sbjct: 274 YGKAGRTREAELLVTKMKQRKDCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSP 333

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           D  T + LISA ++ + + +   LV+ M 
Sbjct: 334 DQVTFRTLISAYAANNVVWKAEALVQEME 362



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 95/253 (37%), Gaps = 43/253 (16%)

Query: 42  HTPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE-- 94
             P  F  + S Y     F++A  VF EM + G+  T  +   ++  Y K G   + E  
Sbjct: 227 ENPETFNTMISFYGEHAKFAEASKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAELL 286

Query: 95  ----------------------------------GVINQMHKSGLKPDTFVINSMLNLYG 120
                                             G + +M  SG+ PD     ++++ Y 
Sbjct: 287 VTKMKQRKDCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSPDQVTFRTLISAYA 346

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
                 K E ++  ME   +  D + Y ++I +Y R   + K E +F+ L + R   +V 
Sbjct: 347 ANNVVWKAEALVQEMEGSGFFIDQAMYTVMIAMYVRARDVSKAESVFRFLHS-RGGLEVS 405

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  Y+  K   +  E+FE   +AG         V++ A  + D+     T+   M
Sbjct: 406 TYVGVMDVYAEHKCLDQAREVFELAKNAGL-KTPSLYNVMMKAYGACDRFTDAVTVFEAM 464

Query: 241 HKDMKTALPIYFN 253
            KD  +     FN
Sbjct: 465 EKDGASPNEASFN 477



 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 39/77 (50%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           + +Y A++  YNIL+   GR    E ++  +  +  +R+ P + T++  +  + R  +  
Sbjct: 110 QDNYEANVFLYNILLRTLGRAAKWELLQKYWSEMLGERVPPTIFTYSILVDVHGRAGMKD 169

Query: 197 RCLEIFEEMIDAGCYPD 213
             +  +  MI++G  PD
Sbjct: 170 EAIRFYRHMIESGVEPD 186


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 90/180 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F +MK+  I P + +  +L+  + K G V   + V+  M K  +KPD    NS+++ Y 
Sbjct: 258 LFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYC 317

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            + +  K +++  +M  G   A++  Y  ++N + +   +++   LF+ +  +++ P+VV
Sbjct: 318 SINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVV 377

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T++S +    +       L++ +EM D G  P+  T   ++ A      +++   L+  +
Sbjct: 378 TYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNL 437



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 89/185 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +FEEM+   I P + ++  L+    K G +     ++++MH  G  P+    +S+
Sbjct: 358 DEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSI 417

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +    +K   +LT ++      D+ TY ILI    + G +E  + +F+ L  K  
Sbjct: 418 LDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGY 477

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             DV  +T  +  +  K  + + L +  +M D GC P+  T +++I +   +D+ +    
Sbjct: 478 NLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEK 537

Query: 236 LVRTM 240
           L+R M
Sbjct: 538 LLREM 542



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 85/186 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  ++ +M    I P + ++  L++ +S    +     + N+M K  + P+ +  N +
Sbjct: 218 NDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNIL 277

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+    + VL  M K     D+ TYN L++ Y     + K + +F S+ +  +
Sbjct: 278 VDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGV 337

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             +V  +T+ +  + + K+    + +FEEM      P+  T   LI       +I     
Sbjct: 338 IANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALK 397

Query: 236 LVRTMH 241
           LV  MH
Sbjct: 398 LVDEMH 403



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/184 (17%), Positives = 79/184 (42%), Gaps = 3/184 (1%)

Query: 60  AVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  + +KR+    + P    + +++    K   V     + +QM    + PD F  N+++
Sbjct: 184 AALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALI 243

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +  + +     ++   M+K +   ++ T+NIL++ + + G +   + +   +    +K
Sbjct: 244 SGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIK 303

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+ S +  Y       +  +IF+ M   G   +      +++       +++   L
Sbjct: 304 PDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINL 363

Query: 237 VRTM 240
              M
Sbjct: 364 FEEM 367



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/184 (17%), Positives = 80/184 (43%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++F ++ + G  PT  +   L+      G++ +     +++   G   D     +++N  
Sbjct: 117 SIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGL 176

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++G+     ++L  ++      +   YN++I+   +   +     L+  + AKR+ PDV
Sbjct: 177 CKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDV 236

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+ + ++ +S        +++F +M      P+  T  +L+     E ++     ++  
Sbjct: 237 FTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAI 296

Query: 240 MHKD 243
           M KD
Sbjct: 297 MMKD 300



 Score = 37.0 bits (84), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 1/155 (0%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +HK+   P TF  N +L+   +         +   ME     +D  T+NILIN + + G 
Sbjct: 53  LHKNPTPP-TFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGL 111

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
                 +F  +  K   P  +T+ + +     K    + L   ++++  G + D  +   
Sbjct: 112 NSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGT 171

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           LI+      +I     L++ +   +     + +N+
Sbjct: 172 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNM 206


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  +K  G+  ++ +   LL    K G V     +  ++ +SG++ + + +N M+N   +
Sbjct: 311 FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCK 370

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
             + E  +  L+ ME+     D+ TYN LIN Y R G +E+   L  S+  K LKP V T
Sbjct: 371 NQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFT 430

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           + + +    +   Y R   + +EM+  G  PD  T  +L+  C   D +
Sbjct: 431 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 479



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 87/167 (52%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  +   +M+  G+ P + ++  L+ AY + G + +   +++ M   GLKP  F  N+++
Sbjct: 376 NTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAII 435

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   + G++ + + VL  M K   + D +TYNIL+    R   +   E +F  +P++ + 
Sbjct: 436 NGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVV 495

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD+V++++ +   S+     + L+ F +M +AG  PD     +LI  
Sbjct: 496 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGG 542



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 83/187 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +F EM   G+ P   +   L+  Y K GN+ K   +   M +  LKPD    N+
Sbjct: 584 LSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 643

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + +  + EK+ E+   M       +  +Y ILIN Y   G + +   L+  +  K 
Sbjct: 644 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 703

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +  ++T  + +  Y R     +  E    M+  G  PDG T   LI+    E+ +++  
Sbjct: 704 FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAF 763

Query: 235 TLVRTMH 241
            LV  M 
Sbjct: 764 ALVNKME 770



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM   G+ P + S   L+   SK G + +       M  +GL PD  +   ++
Sbjct: 481 DAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 540

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R G   +  +V   M +     D+ TYN ++N   +   + + + LF  +  + + 
Sbjct: 541 GGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 600

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+T+ +  Y +     + + +FE MI     PD  T   LI       ++E+V  L
Sbjct: 601 PDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 660

Query: 237 VRTM 240
              M
Sbjct: 661 WNDM 664



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + + M   G+ P + ++  ++    KTG   + +GV+++M K G+ PDT   N 
Sbjct: 409 LEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNI 468

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    R       E +   M       D+ +++ LI +  + G +++    F+ +    
Sbjct: 469 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 528

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD V +T  +  + R  +    L++ +EM++ GC  D  T   +++    E  + +  
Sbjct: 529 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEAD 588

Query: 235 TLVRTM 240
            L   M
Sbjct: 589 ELFTEM 594



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 5/171 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +MK  G+ P    + +L+  + + G +++   V ++M + G   D    N++LN   +
Sbjct: 521 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCK 580

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
                + +E+ T M +     D  T+  LIN Y + G + K   LF+ +  + LKPDVVT
Sbjct: 581 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVT 640

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-----ACSSE 227
           + + +  + +     +  E++ +MI    YP+  +  +LI+      C SE
Sbjct: 641 YNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSE 691



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 78/158 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +++EM   G   T+ +   ++  Y + GN  K +  ++ M   G+ PD    N++
Sbjct: 690 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 749

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + +    ++   ++  ME      D+ TYN+++N + R G +++ E +   +  + +
Sbjct: 750 INGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGV 809

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            PD  T+TS +  +  +   +    + +EM+  G  PD
Sbjct: 810 NPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 4/190 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++E+ R G+   + +  +++ A  K   +   +  ++ M + G+ PD    N+++N
Sbjct: 342 AWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLIN 401

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  E+  E++ +M        + TYN +IN   + G   + +G+   +    + P
Sbjct: 402 AYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSP 461

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+   L    R         IF+EM   G  PD  +   LI   S    ++Q     
Sbjct: 462 DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYF 521

Query: 238 RTMHKDMKTA 247
           R    DMK A
Sbjct: 522 R----DMKNA 527



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            + ++ +M    I P   S+ +L+  Y   G V++   + ++M + G +      N+++ 
Sbjct: 657 VNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVK 716

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K +E L+ M       D  TYN LIN + +   +++   L   +    L P
Sbjct: 717 GYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLP 776

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           DV+T+   L  +SR+   +    I  +MI+ G  PD  T   LI+   +++ +++
Sbjct: 777 DVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKE 831



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 76/154 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  V +EM   G    + ++  +L    K   +++ + +  +M + G+ PD +   ++
Sbjct: 550 SEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 609

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y + G   K   +   M + +   D+ TYN LI+ + +G  +EK+  L+  + ++R+
Sbjct: 610 INGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 669

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P+ +++   +  Y           +++EM++ G
Sbjct: 670 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 703


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M R    P + ++  L+   SK+G V     V++ M K G+ P+    + +++
Sbjct: 238 AKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLID 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + ++ + ++  ++L  M     A  + TYNIL+N   R   +E    LF+ +  +R  P
Sbjct: 298 GFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHP 357

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            VVT+ + L A    K       ++ EMI  GC PD  T   L    +   ++ +   L+
Sbjct: 358 TVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELM 417

Query: 238 RTM 240
             M
Sbjct: 418 EKM 420



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 81/174 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F+EM   G  PT  S+  L+  + K  ++   + V ++M +S   P+     ++++
Sbjct: 203 AYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLID 262

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ +   EVL  M K     +++TY+ LI+ + +   +++   L + +  + + P
Sbjct: 263 GLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAP 322

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            VVT+   L +  R        ++F  M    C+P   T   L+ A     Q++
Sbjct: 323 TVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 376



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 7/190 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  + E+M R    P   ++  ++    KT  +      + +M   G+KPD F+ N +
Sbjct: 97  EEARELIEKMARYA-PPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFV 155

Query: 116 LNLYGRLGQFEKMEE---VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           L+    L Q EK+EE   +   M K     ++ TYN LIN   +   IE    LF+ +  
Sbjct: 156 LS---GLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAG 212

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           K   P  V++ + +  + +KK      ++F++M+ + C P+  T   LI   S   +++ 
Sbjct: 213 KGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQA 272

Query: 233 VTTLVRTMHK 242
              ++  M K
Sbjct: 273 AAEVLDGMVK 282



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 78/186 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA A  EEM   GI P    +  +L+   +   V +   +  +M K  + P+    N+
Sbjct: 130 IDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNT 189

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   +  + E   E+   M    Y     +YN LI+ + +   +   + +F  +    
Sbjct: 190 LINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSN 249

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+VVT+T+ +   S+    +   E+ + M+  G  P+  T   LI       ++++  
Sbjct: 250 CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAH 309

Query: 235 TLVRTM 240
            L+  M
Sbjct: 310 KLLEQM 315



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/204 (18%), Positives = 88/204 (43%), Gaps = 7/204 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+ F++ F +          +A  +FE+M +  I P + ++  L+    K   +     +
Sbjct: 147 PDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYEL 206

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M   G  P     N++++ + +       ++V   M + +   ++ TY  LI+   +
Sbjct: 207 FKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSK 266

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G ++    +   +  K + P+V T++  +  + + +      ++ E+M+  G  P   T
Sbjct: 267 SGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVT 326

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
             +L+++    D++E    L R M
Sbjct: 327 YNILLNSLCRADKLEDAFKLFRGM 350



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/173 (19%), Positives = 71/173 (41%), Gaps = 1/173 (0%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P   +   +   ++K G + + + V   M ++G          +++   ++G F++  
Sbjct: 6   VIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAY 65

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           ++L  M    +      Y+ +IN   +   +E+   L + + A+   PD +T+   +   
Sbjct: 66  KLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTYGPIVERL 124

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + K     L   EEM   G  PD      ++S    E+++E+   L   M K
Sbjct: 125 CKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVK 177


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F DA  +F+EM    +     S   +++ Y + G   K   +  +M  SG KPD+  + +
Sbjct: 349 FEDAIKLFDEMPERDVA----SWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTT 404

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   RL   E+ +E+   + +  +A D    + L+++YG+ G +E  + +F+ +  K 
Sbjct: 405 VISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRK- 463

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
              +VV+W S +A YS K   + C+E+F  M + G  P   T   ++ ACS
Sbjct: 464 ---NVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M +  +     S  ++++ Y K G+  +   +   M K+G+KPD     S+L 
Sbjct: 554 AENVFQNMPKTNVV----SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLP 609

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +L   EK +E+   + +     +      L+++Y + G +++   +F  LP +    
Sbjct: 610 ACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER---- 665

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           D V+WTS +AAY         L++FE+M  +   PD  T   ++SACS    +++
Sbjct: 666 DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDE 720



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +H   LKPD F   S+L     LG+    + V T + K  +A D+   +  + +Y +   
Sbjct: 289 LHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNV 348

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            E    LF  +P +    DV +W + ++ Y +     + LE+FEEM  +G  PD  T   
Sbjct: 349 FEDAIKLFDEMPER----DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTT 404

Query: 220 LISACSSEDQIEQ 232
           +IS+C+    +E+
Sbjct: 405 VISSCARLLDLER 417



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 80/149 (53%), Gaps = 6/149 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  M   GI PT+ +   +L A S++ N+   + +   + ++ ++ D FV +S+++LY 
Sbjct: 487 LFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYF 546

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDV 179
           + G     E V   M K     ++ ++N++I+ Y + G ++E +  +F  +    +KPD 
Sbjct: 547 KCGNIGSAENVFQNMPK----TNVVSWNVMISGYVKVGSYLEALV-IFTDMRKAGVKPDA 601

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           +T+TS L A S+  +  +  EI   +I++
Sbjct: 602 ITFTSVLPACSQLAVLEKGKEIHNFIIES 630



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 77/147 (52%), Gaps = 9/147 (6%)

Query: 50  IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + S Y+ D     A  +FEEMK  G  P   +   ++++ ++  ++ + + +  ++ +SG
Sbjct: 370 VISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSG 429

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
              D FV ++++++YG+ G  E  +EV   +++     ++ ++N +I  Y   G  +   
Sbjct: 430 FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQR----KNVVSWNSMIAGYSLKGDSKSCI 485

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            LF+ +  + ++P + T +S L A SR
Sbjct: 486 ELFRRMDEEGIRPTLTTLSSILMACSR 512



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M++ G+ P   +   +L A S+   + K + + N + +S L+ +  V+ ++L
Sbjct: 584 EALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALL 643

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++Y + G  ++   +   + +     D  ++  +I  YG  G   +   LF+ +     K
Sbjct: 644 DMYAKCGAVDEALHIFNQLPE----RDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAK 699

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           PD VT+ + L+A S   L           +D GCY
Sbjct: 700 PDKVTFLAILSACSHAGL-----------VDEGCY 723


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F DA  +F+EM    +     S   +++ Y + G   K   +  +M  SG KPD+  + +
Sbjct: 157 FEDAIKLFDEMPERDVA----SWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTT 212

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   RL   E+ +E+   + +  +A D    + L+++YG+ G +E  + +F+ +  K 
Sbjct: 213 VISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRK- 271

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
              +VV+W S +A YS K   + C+E+F  M + G  P   T   ++ ACS
Sbjct: 272 ---NVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 319



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M +  +     S  ++++ Y K G+  +   +   M K+G+KPD     S+L 
Sbjct: 362 AENVFQNMPKTNVV----SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLP 417

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +L   EK +E+   + +     +      L+++Y + G +++   +F  LP +    
Sbjct: 418 ACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER---- 473

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           D V+WTS +AAY         L++FE+M  +   PD  T   ++SACS    +++
Sbjct: 474 DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDE 528



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +H   LKPD F   S+L     LG+    + V T + K  +A D+   +  + +Y +   
Sbjct: 97  LHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNV 156

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            E    LF  +P +    DV +W + ++ Y +     + LE+FEEM  +G  PD  T   
Sbjct: 157 FEDAIKLFDEMPER----DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTT 212

Query: 220 LISACS 225
           +IS+C+
Sbjct: 213 VISSCA 218



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 80/149 (53%), Gaps = 6/149 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  M   GI PT+ +   +L A S++ N+   + +   + ++ ++ D FV +S+++LY 
Sbjct: 295 LFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYF 354

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDV 179
           + G     E V   M K     ++ ++N++I+ Y + G ++E +  +F  +    +KPD 
Sbjct: 355 KCGNIGSAENVFQNMPK----TNVVSWNVMISGYVKVGSYLEALV-IFTDMRKAGVKPDA 409

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           +T+TS L A S+  +  +  EI   +I++
Sbjct: 410 ITFTSVLPACSQLAVLEKGKEIHNFIIES 438



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 77/147 (52%), Gaps = 9/147 (6%)

Query: 50  IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + S Y+ D     A  +FEEMK  G  P   +   ++++ ++  ++ + + +  ++ +SG
Sbjct: 178 VISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSG 237

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
              D FV ++++++YG+ G  E  +EV   +++     ++ ++N +I  Y   G  +   
Sbjct: 238 FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQR----KNVVSWNSMIAGYSLKGDSKSCI 293

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            LF+ +  + ++P + T +S L A SR
Sbjct: 294 ELFRRMDEEGIRPTLTTLSSILMACSR 320



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M++ G+ P   +   +L A S+   + K + + N + +S L+ +  V+ ++L
Sbjct: 392 EALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALL 451

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++Y + G  ++   +   + +     D  ++  +I  YG  G   +   LF+ +     K
Sbjct: 452 DMYAKCGAVDEALHIFNQLPE----RDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAK 507

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           PD VT+ + L+A S   L           +D GCY
Sbjct: 508 PDKVTFLAILSACSHAGL-----------VDEGCY 531


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 95/187 (50%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A ++F++M    + P   +  +L+   SK G + + + V   M + G++P+    N++
Sbjct: 169 NEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNAL 228

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y    Q ++ +++   M +   A  + +YNILI  + + G I++ +GL   +  K L
Sbjct: 229 MDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKAL 288

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD VT+++ +  + +    +   ++ EEM   G  PD  T  +++     +  +++   
Sbjct: 289 TPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFE 348

Query: 236 LVRTMHK 242
           L++ M +
Sbjct: 349 LLKAMQE 355



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 79/169 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +  EM    +TP   ++  L+  + + G     + ++ +M   GL PD    + 
Sbjct: 273 IDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSI 332

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   + G  ++  E+L AM++     +I  Y ILI      G +E    LF +L  K 
Sbjct: 333 VLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKG 392

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++PDVVT+T  ++   +  L     E+F +M   GC P+  T  V+I  
Sbjct: 393 IQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQG 441



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 88/184 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM ++G  P + ++  ++    K G+      ++ +M + G KP+  V ++++
Sbjct: 65  DAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTII 124

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +     +  E L+ M     + ++ TY+ +++ +   G   +   LF+ +  + + 
Sbjct: 125 DSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVM 184

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+   +   S++ +      +FE MI+ G  P+  T   L+    S+ Q+++   L
Sbjct: 185 PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKL 244

Query: 237 VRTM 240
              M
Sbjct: 245 FNIM 248



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 82/187 (43%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F  A +V   M +LG+ P   +   LL   S    +     + ++M K G +PD    +
Sbjct: 27  HFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYS 86

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N   ++G      ++L  ME+     ++  Y+ +I+   +   I +       +  +
Sbjct: 87  TIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNR 146

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + P+VVT++S L  +           +F++M++    PD  T  +L+   S E  I + 
Sbjct: 147 GISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEA 206

Query: 234 TTLVRTM 240
             +  TM
Sbjct: 207 QCVFETM 213



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 1/174 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  + EEM+  G+ P + ++ ++L    K G++ +   ++  M +S ++P+ F+   ++
Sbjct: 310 DAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILI 369

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 G+ E   E+ + +       D+ TY ++I+   +GG   +   LF+ +      
Sbjct: 370 QGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCL 429

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           P+  T+   +  + R         + EEM+  G   D  T ++L S   S D+I
Sbjct: 430 PNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQML-SDLESRDEI 482



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 92/198 (46%), Gaps = 1/198 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M+  G  P +  +  ++ +  K   + +    +++M   G+ P+    +S+L+
Sbjct: 101 AIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILH 160

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  LG+  +   +   M + +   D  T+NIL++   + G I + + +F+++  K ++P
Sbjct: 161 GFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEP 220

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V T+ + +  Y  +       ++F  M+  GC P   +  +LI       +I++   L+
Sbjct: 221 NVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLL 280

Query: 238 RTM-HKDMKTALPIYFNL 254
             M HK +      Y  L
Sbjct: 281 AEMSHKALTPDTVTYSTL 298


>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
 gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 87/185 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +FEEM++  + P   ++  L+T + K G        + +M +  +  D  + ++++ 
Sbjct: 174 AHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIE 233

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           L  +L  + K   + + +++   + D+  YN +IN++G+     +   L   + A  + P
Sbjct: 234 LSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMP 293

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++++ L+ Y     Y   L +F EM +  C  D  T  V+I      D  ++   L 
Sbjct: 294 DTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLF 353

Query: 238 RTMHK 242
            +M K
Sbjct: 354 WSMRK 358



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 94/187 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR GI+P + ++  ++  + K     +   ++ +M   G+ PDT   ++
Sbjct: 241 YSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYST 300

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++Y   G++ +   V + M +     D++T N++I++YG+    ++ + LF S+    
Sbjct: 301 LLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMG 360

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P +V++ + L  Y   +L+   + +F  M       +  T   +I       + E+ T
Sbjct: 361 IEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKAT 420

Query: 235 TLVRTMH 241
            LV+ M 
Sbjct: 421 NLVQEMQ 427



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 96/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A  +  EM+  G+ P   S+  LL+ Y + G   +   V +
Sbjct: 260 LVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFS 319

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M++     D    N M+++YG+L   ++ + +  +M K      I +YN L+ +YG   
Sbjct: 320 EMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAE 379

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ + +  Y +   + +   + +EM + G  P+  T  
Sbjct: 380 LFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYS 439

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 440 TIISIWDKAGKLDRAAMLFQKLR 462



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 86/182 (47%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y +     +   +   M +  ++ +    N+M+
Sbjct: 348 EADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMI 407

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+ + G +++   LFQ L +  ++
Sbjct: 408 KIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIE 467

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD    +  I+  +   +IE+ T +
Sbjct: 468 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRETAITILAGAGRIEEATWV 523

Query: 237 VR 238
            R
Sbjct: 524 FR 525



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 106/224 (47%), Gaps = 12/224 (5%)

Query: 43  TPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N  + I+  S+    A  + +EM+  GI P   ++  +++ + K G + +   +  ++
Sbjct: 402 TYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKL 461

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             SG++ D  +  +M+  Y R G     + +L  +++     D       I I    G I
Sbjct: 462 RSSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRETAITILAGAGRI 517

Query: 161 EKMEGLF-QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           E+   +F Q+  A  +K D+  +   +  +SR + +   +E+F++M  AG +PD     +
Sbjct: 518 EEATWVFRQAFDAGEVK-DITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIAL 576

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKT-ALPIYF---NLYGEKG 259
           +++AC    + E+   + + M ++    +  ++F   +LYG +G
Sbjct: 577 VLNACGKLREFEKADAIYKEMEEEGCVFSDEVHFQMLSLYGARG 620



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 81/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A +VF EM  +     + +  +++  Y +     + + +   M K G++P     N+
Sbjct: 311 YVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNT 370

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++     ++ TYN +I IYG+    EK   L Q +  + 
Sbjct: 371 LLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRG 430

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 431 IEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVA 479



 Score = 43.9 bits (102), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 2/114 (1%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            ++   P  F  N ++    R  Q+E    +   M + + A D  TY+ LI  +G+ G  
Sbjct: 147 EEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMF 206

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPD 213
           +      Q +   R+  D+V + S L   SRK   Y + + IF  +  +G  PD
Sbjct: 207 DSALSWLQKMEQDRVSGDLVLY-SNLIELSRKLCDYSKAISIFSRLKRSGISPD 259



 Score = 41.6 bits (96), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 42/77 (54%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V ++M  +G  PD+ VI  +LN  G+L +FEK + +   ME+         +  ++++YG
Sbjct: 558 VFDKMRGAGYFPDSNVIALVLNACGKLREFEKADAIYKEMEEEGCVFSDEVHFQMLSLYG 617

Query: 156 RGGFIEKMEGLFQSLPA 172
             G  + ++ LF+ L +
Sbjct: 618 ARGDFQMVDSLFERLDS 634



 Score = 40.4 bits (93), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 37/207 (17%), Positives = 82/207 (39%), Gaps = 11/207 (5%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN   +  I SI+        A  +F++++  GI      +  ++ AY + G VA  + +
Sbjct: 433 PNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRL 492

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++++ +    PD     + + +    G+ E+   V           DI+ +  +I+++ R
Sbjct: 493 LHELKR----PDNIPRETAITILAGAGRIEEATWVFRQAFDAGEVKDITVFGCMIDLFSR 548

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
                 +  +F  +      PD       L A  + + + +   I++EM + GC      
Sbjct: 549 NRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKLREFEKADAIYKEMEEEGCVFSDEV 608

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              ++S   +    + V +L   +  D
Sbjct: 609 HFQMLSLYGARGDFQMVDSLFERLDSD 635



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKG 138
           LL + S+T N  +   ++     S  K     I  M++L  R   +++   +L  + E+ 
Sbjct: 95  LLASISQTSNEQELYSLM-----SPYKGRQLSIRFMVSLLSREPDWQRSLALLDWINEEA 149

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           SY+  +  YN++I    R    E   GLF+ +  + L PD  T+++ +  + ++ ++   
Sbjct: 150 SYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSA 209

Query: 199 LEIFEEM 205
           L   ++M
Sbjct: 210 LSWLQKM 216


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 6/208 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+EM   G+ P + +    + A  +   + + + + + M   G KP+    +++L+ Y 
Sbjct: 156 VFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYA 215

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G F  M  ++  M       +   +NILIN Y R G ++K   +F+ +  K + PD V
Sbjct: 216 AEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTV 275

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-RT 239
           T+ + +++  R       L  F  M+D G  P     + LI  C +  ++ +   L+   
Sbjct: 276 TFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEM 335

Query: 240 MHKDMKTALPIYF-----NLYGEKGVAR 262
           M+KD+      YF     NL+ E  VA 
Sbjct: 336 MNKDIPPPGVKYFSSIINNLFKEGRVAE 363



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AVF  + R G+ P + S+  L+  +SK G V K   +  +M +  + PD    NS+++
Sbjct: 48  ALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLID 107

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +  K E VL  M       +  TYN LI  Y   G  ++   +F+ + +  L P
Sbjct: 108 GLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIP 167

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            VV   S + A  R    +   +IF+ M+  G  P+  +   L+   ++E     + +LV
Sbjct: 168 CVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLV 227

Query: 238 RTM 240
             M
Sbjct: 228 NLM 230



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           +  V E+M   GI P  K++  L+  YS  G   +   V  +M  SGL P     NS ++
Sbjct: 118 SERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIH 177

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R  + ++ +++  +M       +I +Y+ L++ Y   G    M  L   + +K + P
Sbjct: 178 ALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVP 237

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +   +   + AY+R  +  + + IFE+M + G  PD  T   +IS+
Sbjct: 238 NHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISS 283



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 79/166 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F +M    ++P + ++  L+    KT  + K E V+ QM  +G++P+    NS++ 
Sbjct: 83  AYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIY 142

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G +++   V   M        +   N  I+   R   I++ + +F S+  K  KP
Sbjct: 143 GYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKP 202

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +++++++ L  Y+ +  +     +   M+  G  P+     +LI+A
Sbjct: 203 NIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINA 248



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 88/212 (41%), Gaps = 27/212 (12%)

Query: 58  AHAVFEEMKRLGITPT-MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +  EM    I P  +K    ++    K G VA+ + +++ M ++G +P+    NS++
Sbjct: 328 AKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLM 387

Query: 117 NLYGRLGQFEK------------MEEVLTAMEKGSYAA--------------DISTYNIL 150
             Y  +G  E+            +  ++T M + + AA               I TY ++
Sbjct: 388 EGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVSIQTYGVV 447

Query: 151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
           +    R    ++   L + L A  +K D++T+   ++A  +    +   E+F  +   G 
Sbjct: 448 LGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGL 507

Query: 211 YPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            P   T  ++IS    E+  E+   L  ++ K
Sbjct: 508 VPTVHTYNLMISNLIKEESYEEADNLFISVEK 539



 Score = 41.2 bits (95), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++ +++   M   GI P  +   +L+ AY++ G + K   +   M   G+ PDT    +
Sbjct: 220 FANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 279

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADI------STYNILINIYGRGGFIEKMEGLFQ 168
           +++   R+G+ +       A+ K ++  DI      + Y  LI      G + K + L  
Sbjct: 280 VISSLCRIGRLDD------ALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELIS 333

Query: 169 SLPAKRLKPDVVTWTSRL 186
            +  K + P  V + S +
Sbjct: 334 EMMNKDIPPPGVKYFSSI 351



 Score = 40.8 bits (94), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/100 (19%), Positives = 53/100 (53%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  +   G+ PT+ ++ L+++   K  +  + + +   + KSG  PD+ ++N ++
Sbjct: 494 EAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIV 553

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            +  +  +  K    L+ +++ +   + ST ++L +++ R
Sbjct: 554 RMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSR 593



 Score = 38.5 bits (88), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 35  INFLLLQH--TPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           +++L+L H    N  V   +   + A  +F EM   G T +++++ ++L    +     +
Sbjct: 400 LHYLMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDE 459

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              ++ ++    +K D    N +++   ++G+ ++ +E+  A+        + TYN++I+
Sbjct: 460 ANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMIS 519

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
              +    E+ + LF S+      PD     SRL  +  + L ++
Sbjct: 520 NLIKEESYEEADNLFISVEKSGRAPD-----SRLLNHIVRMLLKK 559


>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
           [Burroughsia fastigiata]
          Length = 348

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EMK  G+TP   S+  LLT Y +     +   V +
Sbjct: 22  LVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTLLTMYVENKKFLEALSVFS 81

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 82  EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLVRVYGDAE 141

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM   G  P+  T  
Sbjct: 142 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 201

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 202 TIISIWGKVGKLDRAAMLFQKLR 224



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 80/151 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +K  G  P + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 3   YSKAISIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYST 62

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V + M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + +  Y   +L+   + +F  M
Sbjct: 123 IEPNVVSYNTLVRVYGDAELFGEAIHLFRLM 153



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 94/188 (50%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 54  TPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 113

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N+++ +YG    F +   +   M++ +   ++ TYN +I IYG
Sbjct: 114 LFWGMRKMGIEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYG 173

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q + ++ ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 174 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQI 233

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 234 LFQTMIVA 241



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  L+  Y       +   +   M +  ++ +    NSM+
Sbjct: 110 EADKLFWGMRKMGIEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMI 169

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +   +
Sbjct: 170 MIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXE 229

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D + + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 230 IDQILFQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDTAIHILAGAGRIEEATYV 285

Query: 237 VR 238
            R
Sbjct: 286 FR 287



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/200 (18%), Positives = 83/200 (41%), Gaps = 31/200 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 143 FGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 202

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP--- 171
           +++++G++G+ ++   +   +       D   +  +I  Y R G +   + L   L    
Sbjct: 203 IISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPD 262

Query: 172 -------------AKRLKP---------------DVVTWTSRLAAYSRKKLYRRCLEIFE 203
                        A R++                D+  +   +   S+ K Y   +E+F+
Sbjct: 263 NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFD 322

Query: 204 EMIDAGCYPDGGTAKVLISA 223
           +M   G +PD     ++++A
Sbjct: 323 KMRGLGYFPDSDVIAIVLNA 342



 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/100 (20%), Positives = 43/100 (43%)

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            + K   + + ++   Y  D+  YN +I ++G+     +   L   +    + P+  +++
Sbjct: 2   DYSKAISIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYS 61

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + L  Y   K +   L +F EM +  C  D  T  ++I  
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDV 101


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 8/184 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+E++       + S  +++T Y++ G   +   + +QM ++G++PD     S+ 
Sbjct: 234 DARDLFQEIR----CRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVF 289

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                L   E+  +    + K  + +D+S  N LI ++ + G I   E +F  +      
Sbjct: 290 IACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQIS----H 345

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+V+W + +AA+++  LY +    F++M+     PDG T   L+SAC    ++ +   L
Sbjct: 346 PDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNL 405

Query: 237 VRTM 240
              M
Sbjct: 406 FSLM 409



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 78/185 (42%), Gaps = 5/185 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M R G+ P   + + +  A +   ++ +       + K G   D  V N+++
Sbjct: 265 EALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALI 324

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++ + G     E V   +       D+ ++N +I  + + G  +K    F  +    ++
Sbjct: 325 TVHSKCGGIVDSELVFGQISH----PDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQ 380

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTT 235
           PD +T+ S L+A  R       + +F  M+D  G  P       L+   S   Q+++   
Sbjct: 381 PDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACK 440

Query: 236 LVRTM 240
           ++  M
Sbjct: 441 IINEM 445


>gi|224068256|ref|XP_002302689.1| predicted protein [Populus trichocarpa]
 gi|222844415|gb|EEE81962.1| predicted protein [Populus trichocarpa]
          Length = 640

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +F+     S A  +FE    +G+ P   ++  +++++ K G   +   V N+M +   
Sbjct: 441 LSIFLAKGKLSLACKLFEIFTDMGVDPVSYTYNSIMSSFVKKGYFNRAWDVFNEMGEKVC 500

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            PD    N ++   G++G+ +    VL  + K     DI  YN LI+  G+ G I++   
Sbjct: 501 PPDIATYNLVIQGLGKMGRADLASSVLDKLMKQGGYLDIVMYNTLIDALGKAGRIDEANN 560

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           LF+ +    L PDVVT+   +  +S+    +   +  + M+DAGC P+  T   L
Sbjct: 561 LFEQMKISGLNPDVVTYNIMIEVHSKTGRLKDAYKFLKMMLDAGCLPNHVTDTTL 615



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V+EE+K  G  P   ++ +L+    K+  +     + ++M  +G  PDT V NS+L
Sbjct: 138 DAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDATKIFSEMQYNGFLPDTVVYNSLL 197

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  +  +  ++   M +    A   TYNILI+   + G  E    LF  L  K   
Sbjct: 198 DGMFKARKVMEACQLFEKMVQDGVRASCWTYNILIDGLCKNGRAEAGYNLFCGLKKKGQF 257

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            D VT++  +    RK      L + EEM + G   D
Sbjct: 258 VDAVTYSIVVLLLCRKGHLEEALHLVEEMEERGFVVD 294



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 5/110 (4%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQ-----SLPAKRLKPDVVTWTSRLAAYSR 191
           KG +  +   YNI I+ +G  G +     LF+     SL +  L PD+ T+ S +     
Sbjct: 73  KGGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDLCTYNSLIHVLCL 132

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
               +  + ++EE+  +G  PD  T ++LI  C    Q+E  T +   M 
Sbjct: 133 AGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDATKIFSEMQ 182



 Score = 40.4 bits (93), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 59/132 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FE+M + G+  +  ++ +L+    K G       +   + K G   D    + ++
Sbjct: 208 EACQLFEKMVQDGVRASCWTYNILIDGLCKNGRAEAGYNLFCGLKKKGQFVDAVTYSIVV 267

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            L  R G  E+   ++  ME+  +  D+ T   L+  + + G  +  E L + +    L 
Sbjct: 268 LLLCRKGHLEEALHLVEEMEERGFVVDLITITSLLIAFHKQGRWDCTERLMKHIRDVNLL 327

Query: 177 PDVVTWTSRLAA 188
           P+V+ W + + A
Sbjct: 328 PNVLKWRADMEA 339



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/106 (21%), Positives = 50/106 (47%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           KG+ + DI   N  ++I+   G +     LF+      + P   T+ S ++++ +K  + 
Sbjct: 427 KGAGSFDIDMVNTFLSIFLAKGKLSLACKLFEIFTDMGVDPVSYTYNSIMSSFVKKGYFN 486

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           R  ++F EM +  C PD  T  ++I       + +  ++++  + K
Sbjct: 487 RAWDVFNEMGEKVCPPDIATYNLVIQGLGKMGRADLASSVLDKLMK 532



 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 9/149 (6%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQ-------FEKMEEVLTAMEKGSYAADISTYNILINIY 154
           K G + +T+  N  ++ +G  G        F++M+E   ++  GS   D+ TYN LI++ 
Sbjct: 73  KGGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKE--KSLASGSLDPDLCTYNSLIHVL 130

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
              G ++    +++ L     +PD  T+   +    +        +IF EM   G  PD 
Sbjct: 131 CLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDATKIFSEMQYNGFLPDT 190

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKD 243
                L+       ++ +   L   M +D
Sbjct: 191 VVYNSLLDGMFKARKVMEACQLFEKMVQD 219



 Score = 38.1 bits (87), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 50/127 (39%)

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           L PD    NS++++    G+ +    V   ++   +  D  TY ILI    +   +E   
Sbjct: 116 LDPDLCTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDAT 175

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            +F  +      PD V + S L    + +      ++FE+M+  G      T  +LI   
Sbjct: 176 KIFSEMQYNGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQDGVRASCWTYNILIDGL 235

Query: 225 SSEDQIE 231
               + E
Sbjct: 236 CKNGRAE 242


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 6/186 (3%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FEEM+    +P + ++ +L+ A  K G V K   V   M   G +P+ F   SM++  G
Sbjct: 146 LFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLG 205

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  +K   +   M      A    YN LI+  GR G  +    LF+ + +K L+PD V
Sbjct: 206 KSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHV 265

Query: 181 TWTS---RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           T+TS    L    R    RR   IF+E  D GC  D     VLI       ++++   + 
Sbjct: 266 TFTSLVYGLGVAGRASEARR---IFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIF 322

Query: 238 RTMHKD 243
             + +D
Sbjct: 323 GELEED 328



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 5/202 (2%)

Query: 44  PNLFVFIFSIYFSDA--HAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +F+ +   Y S        E +KR+       T  ++  L+ A+ K G   K   V  
Sbjct: 54  PRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYR 113

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M +SGL+PDT+  N ++N + +  + + + ++   M+  + + ++ TY+ILI+   + G
Sbjct: 114 VMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCG 173

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            +EK   +F  + ++  +P++ T+TS +    +     +   +FEEM   G         
Sbjct: 174 GVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYN 233

Query: 219 VLISACSSEDQIEQVTTLVRTM 240
            LI       + +    L R M
Sbjct: 234 SLIHGLGRSGRADAAAKLFREM 255



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 7/205 (3%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+F +   I       +   A  +FEEM   G+  T   +  L+    ++G       +
Sbjct: 192 PNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKL 251

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M   GL+PD     S++   G  G+  +   +         A D++ YN+LI+   +
Sbjct: 252 FREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCK 311

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +++   +F  L    L PDV T+ + +    +         +  +M  AGC PD   
Sbjct: 312 SKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTV 371

Query: 217 AKVLISACSSEDQIEQVTTLVRTMH 241
              LI       ++E+   L+  M 
Sbjct: 372 YNTLIDGLRKSGRVEEAGQLLLEMQ 396



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 5/186 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F E++  G+ P + +   L+    K+G +     ++  M ++G  PD  V N+
Sbjct: 315 LDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNT 374

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G+ E+  ++L  M+   Y  D+ TYN LI+   +GG IE    LF+ + AK 
Sbjct: 375 LIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKG 434

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIF----EEMIDAGCYPDGGTAKVLISACSSEDQI 230
              + VT+ + L             ++F    +E +D    PD  T   L++        
Sbjct: 435 F-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLS 493

Query: 231 EQVTTL 236
           E   +L
Sbjct: 494 ELANSL 499



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/188 (19%), Positives = 88/188 (46%), Gaps = 1/188 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +F+E + +G    +  + +L+    K+  + +   +  ++ + GL PD +  N++
Sbjct: 281 SEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNAL 340

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+      +L  M++     D++ YN LI+   + G +E+   L   + +   
Sbjct: 341 MDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGY 400

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDVVT+ + +    +       L +FEE I A  + +  T   +++      ++++   
Sbjct: 401 EPDVVTYNTLIDESCKGGRIEDALRLFEE-ISAKGFANTVTYNTILNGLCMAGRVDEAYK 459

Query: 236 LVRTMHKD 243
           L   M ++
Sbjct: 460 LFNGMKQE 467



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 3/207 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+ + Y   A AV+  M + G+ P   +  +L+ A+ K   V     +  +M      P+
Sbjct: 99  FVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPN 158

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               + +++   + G  EK  +V   M+      +I TY  +I+  G+ G ++K   LF+
Sbjct: 159 VITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFE 218

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            + ++ L    V + S +    R        ++F EM+  G  PD  T   L+       
Sbjct: 219 EMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAG 278

Query: 229 QIEQVTTLVRTMHKDMKTALPIYFNLY 255
           +  +   + +   +D+  AL +  NLY
Sbjct: 279 RASEARRIFQE-ARDVGCALDV--NLY 302



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 78/176 (44%), Gaps = 4/176 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQM--HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           L   Y+  G + K    + +M  H+  L    +  NS+++ + + G  +K   V   M +
Sbjct: 60  LARGYASAGLLEKSVEALKRMEGHRCALTASAY--NSLIDAFVKAGYTQKALAVYRVMGQ 117

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                D  T+N+L+N + +   ++ +  LF+ +  +   P+V+T++  + A  +     +
Sbjct: 118 SGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEK 177

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            L++F +M   GC P+  T   +I        +++   L   M  +   A  + +N
Sbjct: 178 ALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYN 233



 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 69/182 (37%), Gaps = 1/182 (0%)

Query: 56  SDAHA-VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +DA A +F EM   G+ P   +   L+      G  ++   +  +    G   D  + N 
Sbjct: 245 ADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNV 304

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  + ++  E+   +E+     D+ T+N L++   + G I     L   +    
Sbjct: 305 LIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAG 364

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV  + + +    +        ++  EM   G  PD  T   LI       +IE   
Sbjct: 365 CTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDAL 424

Query: 235 TL 236
            L
Sbjct: 425 RL 426


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M   G +P + ++ L++    K G ++   G++N     G  PD F  N++++
Sbjct: 410 ALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLID 469

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +    +K  E+L  M       D+ TYN L+N   +   ++ +   F+++  K   P
Sbjct: 470 GYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTP 529

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+   + ++ + +     +E+F+EM   G  PD  T   LI    S  ++++   L 
Sbjct: 530 NIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELF 589

Query: 238 RTMHKDMK----TAL-PIYFNLYGEK 258
            T+ K+ K    TA+  I  N + EK
Sbjct: 590 VTIEKEYKFSYSTAIFNIMINAFCEK 615



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 95/188 (50%), Gaps = 9/188 (4%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNLF F   I          +A  + E +   G+TP + S+  L+  + K   + + E  
Sbjct: 249 PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECY 308

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL-TAMEKGSYAADISTYNILINIYG 155
           +++M  SG++P+ F  N+++N + + G  +  +++L  AM KG +  D  TY+ LIN   
Sbjct: 309 LHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKG-FIPDEFTYSSLINGLC 367

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             G + +   +F     K  K  ++ + + +   S++ L  + L++ ++M++ GC PD  
Sbjct: 368 NDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIW 427

Query: 216 TAKVLISA 223
           T  ++++ 
Sbjct: 428 TYNLVVNG 435



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 95/220 (43%), Gaps = 35/220 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN--------------------VAKC 93
           YFS AH V+  MK +GI P + +H + + ++  TG                     V+ C
Sbjct: 126 YFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYC 185

Query: 94  EGV---------------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
             +                ++M K G+ PD    N ++++  + G  ++ E++ + + K 
Sbjct: 186 AVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR 245

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               ++ T+NI I    R G I++   L +S+ ++ L PDV+++ + +  + +       
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
                +M+++G  P+  T   +I+       ++    ++R
Sbjct: 306 ECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILR 345



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 2/184 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AVF E    G   ++  +  L+   SK G V +   ++  M + G  PD +  N ++N
Sbjct: 375 AMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVN 434

Query: 118 LYGRLGQFEKMEEVLT-AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
              ++G       +L  A+ KG    DI T+N LI+ Y +   ++K   +  ++ +  + 
Sbjct: 435 GLCKMGCLSDANGILNDAIAKGC-IPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT 493

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV+T+ + L    + +     ++ F+ M++ GC P+  T  +LI +   + ++ +   L
Sbjct: 494 PDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMEL 553

Query: 237 VRTM 240
            + M
Sbjct: 554 FKEM 557



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 96/210 (45%), Gaps = 3/210 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A+ +F+EM + GI P + +   L+    K GNV + E + +++ K G+ P+ F  N  +
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R G  ++   +L ++       D+ +YN LI  + +   + + E     +    ++
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE 318

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTT 235
           P+  T+ + +  + +  + +   +I  + +  G  PD  T   LI+  C+  D    +  
Sbjct: 319 PNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAV 378

Query: 236 LVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
               M K  K ++ +Y  L   KG+++  L
Sbjct: 379 FYEAMEKGFKHSIILYNTLV--KGLSKQGL 406



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 67/148 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA+ +  +    G  P + +   L+  Y K  N+ K   +++ M   G+ PD    N+
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNT 501

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN   +  + + + +   AM +     +I TYNILI  + +   + +   LF+ +  + 
Sbjct: 502 LLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRG 561

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           L PD+VT  + +          +  E+F
Sbjct: 562 LTPDIVTLCTLICGLCSNGELDKAYELF 589



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/201 (19%), Positives = 87/201 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  +    G  P   ++  L+      G++ +   V  +  + G K    + N+++
Sbjct: 339 NADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               + G   +  +++  M +   + DI TYN+++N   + G +    G+     AK   
Sbjct: 399 KGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCI 458

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+ T+ + +  Y +++   + +EI + M+  G  PD  T   L++      +++ V   
Sbjct: 459 PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDT 518

Query: 237 VRTMHKDMKTALPIYFNLYGE 257
            + M +   T   I +N+  E
Sbjct: 519 FKAMLEKGCTPNIITYNILIE 539



 Score = 43.9 bits (102), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 79/192 (41%), Gaps = 8/192 (4%)

Query: 59  HAVFEEMKRL--GITPTMKSHML------LLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           H  FE M+ +   +   + S ML      ++  Y + G V +   V  +M     +P   
Sbjct: 53  HGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQ 112

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N+++N+    G F +  +V   M+      D+ T+ I +  +   G       L  ++
Sbjct: 113 SYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNM 172

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           P +  + + V++ + ++ + ++        +F+EM+  G  PD  T   LI     +  +
Sbjct: 173 PGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNV 232

Query: 231 EQVTTLVRTMHK 242
           ++   L   + K
Sbjct: 233 QESEKLFSKVMK 244



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 1/113 (0%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS-TYNILINIYGRGGFI 160
           + G K        M+   G  G+FE ME+VL  M K   +  +   Y  ++  YGR G +
Sbjct: 33  EDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKV 92

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           ++   +F+ +     +P V ++ + +        + +  +++  M D G YPD
Sbjct: 93  QEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPD 145



 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 8/179 (4%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+  +   I         S+A  +F+EMK  G+TP + +   L+      G + K   
Sbjct: 528 TPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYE 587

Query: 96  VINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           +   + K       T + N M+N +         E++   M     A D  TY ++I+ Y
Sbjct: 588 LFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSY 647

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            + G I+          +K L P   T    L            + I   M+  G  P+
Sbjct: 648 CKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 7/180 (3%)

Query: 57  DAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK---SGLKPDTFVI 112
           +A  +F ++K   G   T++++  ++      G     E V+ +M K   S +    ++ 
Sbjct: 22  NALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYI- 80

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
             ++  YGR G+ ++   V   M+       + +YN ++NI    G+  +   ++  +  
Sbjct: 81  -GIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKD 139

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED-QIE 231
             + PDV T T R+ ++         L +   M   GC  +  +   +IS    E+ QIE
Sbjct: 140 IGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIE 199


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 1/200 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F +MK  G+ P +      L +  K G   +   + + M   G KPD     +
Sbjct: 351 LKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCT 410

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ Y   G F  M  +  +M+    AAD   +NILI+ Y + G ++    +F  +  + 
Sbjct: 411 LLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDVVT+++ ++A+SR       +E F +M+  G  P+      +I        + +  
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAK 530

Query: 235 TLVRTM-HKDMKTALPIYFN 253
            LV  M +K +     ++FN
Sbjct: 531 ELVSEMINKGIPRPDIVFFN 550



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 39/219 (17%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F EM R G+ P + ++ L++ A  K   + K E V+ QM  +G +PDT   N M++
Sbjct: 284 ACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIH 343

Query: 118 LYGRLGQ-------FEKME----------------------------EVLTAMEKGSYAA 142
            Y  LG+       F KM+                            E+  +M    +  
Sbjct: 344 GYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKP 403

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           DI +Y  L++ Y   G+   M GLF S+ +  +  D   +   + AY+++ +    + IF
Sbjct: 404 DIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIF 463

Query: 203 EEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLV 237
            EM   G  PD  T   +ISA S      D +E+   +V
Sbjct: 464 TEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMV 502



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 26/265 (9%)

Query: 11  LCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSD---------AHAV 61
           LC A R   + N          +L     L   PN  VF +SI             A  +
Sbjct: 202 LCYANRTEEAVNV---------LLHRMSELGCVPN--VFSYSIILKGLCDNSMSQRALDL 250

Query: 62  FEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           F+ M + G   +P + ++  ++  + K G   K   + ++M + G+KPD    N +++  
Sbjct: 251 FQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDAL 310

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +    +K E VL  M       D  TYN +I+ Y   G +++   +F+ + ++ L P++
Sbjct: 311 CKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNI 370

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           V   S LA+  +    +   EIF+ M   G  PD  +   L+   +SE     +  L  +
Sbjct: 371 VICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNS 430

Query: 240 MHKDMKTALPIYFNL----YGEKGV 260
           M  +   A    FN+    Y ++G+
Sbjct: 431 MKSNGIAADCRVFNILIHAYAKRGM 455



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 1/153 (0%)

Query: 58  AHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +  EM   GI  P +     ++ +  K G V     + + +   G +PD     S++
Sbjct: 529 AKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLI 588

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y  +G+ +K  ++L AME      DI TY+ L++ Y + G I     LF+ +  K +K
Sbjct: 589 DGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVK 648

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           P+ VT+   LA   R        + F EMI++G
Sbjct: 649 PNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F+D   +F  MK  GI    +   +L+ AY+K G V     +  +M + G+ PD    +
Sbjct: 420 WFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYS 479

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + R+G+     E    M       + + Y+ +I  +   G + K + L   +  K
Sbjct: 480 TVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINK 539

Query: 174 RL-KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            + +PD+V + S + +  +        +IF+ + D G  PD  T   LI  
Sbjct: 540 GIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDG 590



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 75/185 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + M+ +G+   + ++  LL  Y K G +     +  +M + G+KP+T     ML 
Sbjct: 600 AFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLA 659

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G+     +    M +      +S Y I++    R    ++   LFQ L    +K 
Sbjct: 660 GLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKF 719

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            +    + + A  + +      E+F  +  +G  P+  T  V+I     +  +E    + 
Sbjct: 720 SITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMF 779

Query: 238 RTMHK 242
            +M K
Sbjct: 780 SSMEK 784



 Score = 38.5 bits (88), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 46/236 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---------- 104
            +D   +F EM+R G+ P   ++ ++L    + G         ++M +SG          
Sbjct: 632 INDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGI 691

Query: 105 -------------------------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                                    +K    ++N+M+N   ++ + E+ +E+   +    
Sbjct: 692 ILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASG 751

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              + STY ++I    + G +E    +F S+    + P      SRL      ++ R  L
Sbjct: 752 LLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPG-----SRLL----NRIIRMLL 802

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
           E   E+  AG Y      K ++   S+   +  + +     H+DMK  LP  +N +
Sbjct: 803 EK-GEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYHEDMKL-LPAKYNFF 856


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 37/230 (16%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK--CEGVINQMHKSGL 105
           V+  S  F DA  + + M   GI P + S   L+ A SK+G +A      ++ ++ +SGL
Sbjct: 230 VYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGL 289

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    N++++   +    E    V   M       D+ TYN +++++GR G  E+ E 
Sbjct: 290 RPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAER 349

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRK----KLYRRCLE--------------------- 200
           LF+ L  K   PD +T+ S L A++++    K+   C +                     
Sbjct: 350 LFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYG 409

Query: 201 ----------IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                     +++EM   GC PD  T  V+I +    ++I +   ++  M
Sbjct: 410 KMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDM 459



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 89/187 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F E+   G  P   ++  LL A++K GNV K E    Q+ K+G K +    N+M+
Sbjct: 346 EAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMI 405

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++YG++G+ +    +   M       D  TY ++I+  G+   I +   + + +    LK
Sbjct: 406 HMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLK 465

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P ++ +++ + AY++          F+ MI +G  PD     V++   +     E++  L
Sbjct: 466 PTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCL 525

Query: 237 VRTMHKD 243
            R M  D
Sbjct: 526 YRKMMND 532



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  VFE+M      P + ++  +++ + + G   + E +  ++ + G  PD    NS
Sbjct: 309 LEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNS 368

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + + G  +K+E     + K  +  +  TYN +I++YG+ G ++   GL+  + A  
Sbjct: 369 LLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMG 428

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
             PD VT+T  + +  +        ++ E+M DAG  P
Sbjct: 429 CTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKP 466



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 89/194 (45%)

Query: 48   VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
              I      + + V EE++ +    +  + +LLL A++K G+V +   + N M  +G  P
Sbjct: 824  ALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLP 883

Query: 108  DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
            +  +  SM++L     +F  +E ++  ME   +  D++  N L+N+Y   G  ++   ++
Sbjct: 884  NMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVY 943

Query: 168  QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
            +S+    L+PD  T+ + +  Y R         +  EM   G  P   + K L++A +  
Sbjct: 944  RSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKA 1003

Query: 228  DQIEQVTTLVRTMH 241
            +  EQ   +   M 
Sbjct: 1004 ELREQADQIFEEMR 1017



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 98/219 (44%), Gaps = 8/219 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  VF  ++  G   T++    ++  Y+++G       +++ MH  G+ PD    N++
Sbjct: 205 SIAEEVF--LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTL 262

Query: 116 LNLYGRLGQFEK--MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +N   + G        ++L  + +     D+ TYN LI+   +   +E    +F+ + A 
Sbjct: 263 INARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIAS 322

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PD+ T+ + ++ + R         +F E+++ G  PD  T   L+ A + E  +++V
Sbjct: 323 ECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKV 382

Query: 234 ----TTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY 268
                 LV+   K  +       ++YG+ G     +G Y
Sbjct: 383 EHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLY 421



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 17/182 (9%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EM+ +G TP   ++ +++ +  K   +A+   V+  M  +GLKP     ++++ 
Sbjct: 417 AVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALIC 476

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+    E     M       D   Y ++++++ R G  EKM  L++ +     +P
Sbjct: 477 AYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRP 536

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM---------------IDAGCYPDGGTAKVLIS 222
           D   +   L A +++       E+ ++M               I A C   G  AK+L  
Sbjct: 537 DDDMYQVLLVALAKEDKCEEIEEVIQDMELLCRMNLGIISTMLIKARCVSQG--AKLLKK 594

Query: 223 AC 224
           AC
Sbjct: 595 AC 596



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  V E+M   G+ PT+ +   L+ AY+K G  A  E   + M  SG+KPD      
Sbjct: 449 IAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLV 508

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           ML+++ R G  EKM  +   M   +Y  D   Y +L+    +    E++E + Q +
Sbjct: 509 MLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDM 564



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +FEEM+          + +++  Y   GN +K E ++  M + G++P    ++ ++ 
Sbjct: 1009 ADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMT 1068

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--L 175
             YG  GQ  + E VL  ++  S       Y+ + + Y + G  +   G  + L  KR  +
Sbjct: 1069 SYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNG--DYNHGTTKLLEMKRDGV 1126

Query: 176  KPDVVTWTSRLAAYS 190
            +PD   WT  + A S
Sbjct: 1127 EPDHQVWTCFIRAAS 1141



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/186 (18%), Positives = 78/186 (41%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            F D   +  EM+  G  P +     LL  Y+  GN  +   V   + ++GL+PD    N+
Sbjct: 901  FRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNT 960

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++ +Y R  + E+   +L  M K      + +Y  L+    +    E+ + +F+ + +K 
Sbjct: 961  LIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKS 1020

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             + +   +   +  Y     + +   +   M + G  P   T  +L+++  +  Q  +  
Sbjct: 1021 YQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAE 1080

Query: 235  TLVRTM 240
             ++  +
Sbjct: 1081 NVLNNL 1086



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 75/161 (46%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AY+++G   K   V + M K+G  P    +N M+      G+ +++  V+  ++  +
Sbjct: 786 LIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMN 845

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +    ST  +L++ + + G + ++  ++  + A    P++  + S ++       +R   
Sbjct: 846 FKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVE 905

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +  EM  AG  PD      L++  ++    ++ T + R++
Sbjct: 906 LMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSI 946



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
            I + +FS+A  VF +M+ +GI  +   +  +++ Y K G       +++   +SG+  +
Sbjct: 685 LIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGIPLN 744

Query: 109 TFVINS-MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++  YG++  +++ E ++  + + S   D   +N LI+ Y   G  EK   +F
Sbjct: 745 ILSCRVIIIEAYGKIKLWQQAEILVKGLRQAS-GIDRRIWNALIHAYAESGLYEKARAVF 803

Query: 168 QSL 170
            ++
Sbjct: 804 DNM 806



 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 43/96 (44%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            S A  +   MK  GI PT+ +  +L+T+Y   G   + E V+N +  S L+  T   +++
Sbjct: 1042 SKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTV 1101

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
             + Y + G +      L  M++     D   +   I
Sbjct: 1102 FDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFI 1137



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT-AMEKGSYAADISTYNILINIY 154
           V   M   G++    +  S+++ Y +LG  E    ++  A++ G     +S   I+I  Y
Sbjct: 697 VFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGIPLNILSCRVIIIEAY 756

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           G+    ++ E L + L  +    D   W + + AY+   LY +   +F+ MI  G  P  
Sbjct: 757 GKIKLWQQAEILVKGL-RQASGIDRRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTV 815

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
            +   ++ A   + +++++  +V  + +DM
Sbjct: 816 DSVNGMMRALIVDGRLDELYVVVEEL-QDM 844


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 93/195 (47%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM   G+ P + +  +L+ A  K G + +   ++  M + G  PDTF  N++++
Sbjct: 292 AKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLID 351

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G+ +   ++  +ME      D  +YN+LIN Y + G + + + L++ +  K + P
Sbjct: 352 GFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMP 411

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V+T+ + L    R+   R    +F EM      P+  T  +L+      + + +   L 
Sbjct: 412 TVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELF 471

Query: 238 RTM-HKDMKTALPIY 251
             + + D + ++ I+
Sbjct: 472 HYLENHDFQPSIQIF 486



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 9/155 (5%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EMK  GI+P + ++  ++     TG     +G+ N+M   G+ P+    N +++   
Sbjct: 260 LFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALC 319

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ E+   +L  M +   + D  TYN LI+ +   G I+    LF S+ +K ++ D V
Sbjct: 320 KAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAV 379

Query: 181 TWTSRLAAYSR-------KKLYRR--CLEIFEEMI 206
           ++   +  Y +       KKLYR   C EI   +I
Sbjct: 380 SYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVI 414



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 82/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  ++ EM    I PT+ ++  LLT   + G V     +  +M    L P++   N +L
Sbjct: 396 EAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILL 455

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +     +  E+   +E   +   I  +N LI+   +   IE    LF  L  + L+
Sbjct: 456 DGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLE 515

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V+T+T  +    +        ++F  M + GC P+  T   L+      D++++V  L
Sbjct: 516 PNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVEL 575

Query: 237 VRTM 240
           ++ M
Sbjct: 576 LQEM 579



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 86/183 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F EMK   +TP   ++ +LL    K  ++++   + + +     +P   + N ++
Sbjct: 431 DAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLI 490

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  + E   E+   +       ++ TY ++I+   + G +E  + LF  +  K   
Sbjct: 491 DGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCA 550

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++VT+ + +  + +    ++ +E+ +EM +    PD  T  +++   S +++  +   L
Sbjct: 551 PNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHL 610

Query: 237 VRT 239
           + T
Sbjct: 611 LPT 613



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 68/149 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + S+A  +F  ++     P+++    L+    K   +     + N++   GL+P+     
Sbjct: 463 HLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYT 522

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M++   + GQ E  +++   ME+   A ++ T+N L+  + +   ++K+  L Q +  K
Sbjct: 523 VMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEK 582

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
              PD  T +  +   S+ + YR  L + 
Sbjct: 583 DFSPDASTISIVVDLLSKDEKYREYLHLL 611



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 74/194 (38%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F       DA  +F  M+  GI     S+ +L+  Y K+G + + + +  +M    + P 
Sbjct: 353 FCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPT 412

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N++L    R G+      +   M+      +  TYNIL++   +   + +   LF 
Sbjct: 413 VITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFH 472

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            L     +P +  +   +    + +      E+F  +   G  P+  T  V+I       
Sbjct: 473 YLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSG 532

Query: 229 QIEQVTTLVRTMHK 242
           Q+E    L   M +
Sbjct: 533 QLENAKDLFLGMEE 546



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 95/264 (35%), Gaps = 76/264 (28%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           I  S+A +VF  +  +  TP + S   LL A +K         +  +M   GL PD   +
Sbjct: 71  IKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITL 130

Query: 113 NSMLNLYGRLGQFEKMEEVL---------------TAMEKG------------------- 138
           N ++N Y  L + +    VL               T++ KG                   
Sbjct: 131 NILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVR 190

Query: 139 -SYAADISTYNILIN------------------IYGRGGF-------------------- 159
             Y  ++ TY  L+N                  + G GGF                    
Sbjct: 191 MGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCK 250

Query: 160 ---IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              I+K + LF  +  + + PDVV ++S +        +     +F EM+D G +P+  T
Sbjct: 251 DGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVT 310

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
             VLI A     ++E+   L++ M
Sbjct: 311 FNVLIDALCKAGKMEEANHLLKLM 334



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 74/171 (43%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           I P +  +  ++ +  K G + K + +  +M   G+ PD    +S+++     G++E  +
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAK 293

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            +   M       ++ T+N+LI+   + G +E+   L + +  +   PD  T+ + +  +
Sbjct: 294 GLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGF 353

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             +       ++F  M   G   D  +  VLI+      ++ +   L R M
Sbjct: 354 CLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREM 404


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 92/181 (50%), Gaps = 1/181 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFEE+K  G  PT++++  L+  + K G     + ++N+M+  GL  +  V NS+++
Sbjct: 259 ATRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIID 318

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  +K  E++  M +     DI+TYNILIN    GG I++ E   +    + L P
Sbjct: 319 AKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLP 378

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  ++T  + AY ++  Y    ++  ++ + G  PD  +    I    +  +I+ V  +V
Sbjct: 379 NKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEID-VALMV 437

Query: 238 R 238
           R
Sbjct: 438 R 438



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 95/204 (46%), Gaps = 3/204 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           FI +     A  +FE +   GI P +  + +++    K G +      +N+M  +   PD
Sbjct: 495 FIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPD 554

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            +  +++++ Y +    +   ++   M K  Y  ++  Y  LIN + +   + + E +F+
Sbjct: 555 EYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFR 614

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
           ++ +  L+P+VVT+T  +  +S+     +    FE M+   C P+  T   LI+  ++  
Sbjct: 615 AMQSFNLEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLTN-- 672

Query: 229 QIEQVTTLVRTMHKDMKTALPIYF 252
            I   T L+    ++ ++ +  +F
Sbjct: 673 -ITNTTLLIEKNEENDRSLILDFF 695



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 78/178 (43%), Gaps = 2/178 (1%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           S ++++      G V +   +I+    +G  P+    N +++ Y + G  ++   V   +
Sbjct: 207 SIVIVVKGLCDVGKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEEL 266

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
           +   +   + TY  LI+ + + G  + ++ L   +    L  +V  + S + A  +  L 
Sbjct: 267 KLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLV 326

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            +  E+   M + GC PD  T  +LI+   S  +I++    +    +  +T LP  F+
Sbjct: 327 DKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKE--RTLLPNKFS 382



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 2/195 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  EM  L + P    +  L+  + +   + K   +   +   G+ P     N 
Sbjct: 466 FPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNV 525

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+    + G+       +  M+  ++A D  T++ +I+ Y +   ++    +F  +  ++
Sbjct: 526 MIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQK 585

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+VV +TS +  + +     R  ++F  M      P+  T  +LI   S   + E+  
Sbjct: 586 YKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAA 645

Query: 235 TLVRTMHKDMKTALP 249
           +    M   M   LP
Sbjct: 646 SFFELML--MNNCLP 658



 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/172 (17%), Positives = 72/172 (41%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M  +G  P + ++ +L+      G + + E  + +  +  L P+ F    +++ Y + G 
Sbjct: 336 MTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGD 395

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           +    ++L  + +     D+ +Y   I+    GG I+    + + +  K + PD   +  
Sbjct: 396 YVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNV 455

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            ++   +K  +     +  EM+D    PD      L+      +++++ T L
Sbjct: 456 LMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATEL 507



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 7/194 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVIN 113
           FS+   V E+MK     PT+++   ++  Y++ G V K   +   + +     P     N
Sbjct: 109 FSEIEIVLEDMKNRNFKPTLEALNSVICVYAEYGFVDKAVKMFYMVCELYNCFPCVVANN 168

Query: 114 SMLNLYGRLGQFEKMEEVLTAM--EKGSYAAD--ISTYNILINIYG--RGGFIEKMEGLF 167
           S+LN   + G+ +   E+   M    G +  D  +  Y+I+I + G    G +E+   L 
Sbjct: 169 SLLNCLVKNGKVDVACELYDKMLERGGDHGLDLVVDNYSIVIVVKGLCDVGKVEEGRKLI 228

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
                    P+VV +   +  Y +K   +R   +FEE+   G  P   T   LI      
Sbjct: 229 DDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKA 288

Query: 228 DQIEQVTTLVRTMH 241
            + + V  L+  M+
Sbjct: 289 GKFQVVDQLLNEMN 302



 Score = 43.5 bits (101), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 2/185 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    E  K   + P   S+  L+ AY K G+      ++ ++ ++G KPD     + +
Sbjct: 363 EAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFI 422

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +     G+ +    V   M EKG +  D   YN+L++   + G     + L   +    L
Sbjct: 423 HGSVAGGEIDVALMVREKMMEKGVFP-DAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNL 481

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PD   + + +  + R     +  E+FE ++  G  P      V+I       ++    +
Sbjct: 482 QPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVS 541

Query: 236 LVRTM 240
            V  M
Sbjct: 542 YVNKM 546



 Score = 37.4 bits (85), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 69/174 (39%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P + S+   +      G +     V  +M + G+ PD  + N +++   + G+F   
Sbjct: 410 GDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAA 469

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           + +L+ M   +   D   Y  L++ + R   ++K   LF+ + +K + P VV +   +  
Sbjct: 470 KLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKG 529

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             +       +    +M  A   PD  T   +I     +  ++    +   M K
Sbjct: 530 LCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMK 583


>gi|449457967|ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
           chloroplastic-like [Cucumis sativus]
          Length = 894

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 1/184 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V+  S  F+ A  +F   ++ G+   + S+  +++ Y K  +       + +M  +G 
Sbjct: 696 LDVYGKSKLFTKARNLFGLAQKRGLVDAI-SYNTMISVYGKNKDFKNMSSTVQKMKFNGF 754

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
                  N ML+ YG+  Q E    VL  M++ S   D  TYNI+INIYG  G+I+++  
Sbjct: 755 SVSLEAYNCMLDAYGKECQMENFRSVLQRMQETSSECDHYTYNIMINIYGEQGWIDEVAE 814

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +   L A  L+PD+ ++ + + AY    +     ++ +EM +    PD  T   +I A  
Sbjct: 815 VLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITYINMIRALQ 874

Query: 226 SEDQ 229
             DQ
Sbjct: 875 RNDQ 878



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 9/204 (4%)

Query: 41  QHTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           Q  PN+  F  +  +Y       ++   F +M+  GI     ++  ++T Y +     K 
Sbjct: 230 QVQPNVATFGMLMGLYQKKCDIKESEFAFNQMRNFGIVCET-AYASMITIYIRMNLYDKA 288

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           E VI  M +  + P+      MLN Y + G+ E+ E V  +ME+  ++++I  YN LI  
Sbjct: 289 EEVIQLMQEDKVIPNLENWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITG 348

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           YG+   ++  + LF  +    ++PD  T+ S +  + R   Y+     ++E+   G  P+
Sbjct: 349 YGKASNMDTAQRLFLGIKNSGVEPDETTYRSMIEGWGRAGNYKMAEWYYKELKRRGYMPN 408

Query: 214 GGTAKVLIS-ACSSEDQIEQVTTL 236
                 LI+     ED+   + TL
Sbjct: 409 SSNLFTLINLQAKHEDEAGTLKTL 432



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 1/182 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM + G  P   +  ++L  Y K+    K   +     K GL  D    N+M+++YG
Sbjct: 676 LFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGL-VDAISYNTMISVYG 734

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +   F+ M   +  M+   ++  +  YN +++ YG+   +E    + Q +     + D  
Sbjct: 735 KNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGKECQMENFRSVLQRMQETSSECDHY 794

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  Y  +       E+  E+   G  PD  +   LI A      +E+   LV+ M
Sbjct: 795 TYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEM 854

Query: 241 HK 242
            +
Sbjct: 855 RE 856



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 41  QHTPNL-----FVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           ++ PNL      + I+SI   FSD   ++  ++  GI   + ++ +++  Y K G++   
Sbjct: 543 ENKPNLHITCTMIDIYSIMGRFSDGEKLYLSLRSSGIPLDLIAYNVVVRMYVKAGSLEDA 602

Query: 94  EGVINQM-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
             V++ M  +  + PD +++  ML +Y R G   K+ ++   + K   + D   YN +IN
Sbjct: 603 CSVLDLMAEQQDIVPDIYLLRDMLRIYQRCGMVHKLADLYYRILKSGVSWDQEMYNCVIN 662

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
              R   ++++  LF  +      P+ VT    L  Y + KL+ +   +F
Sbjct: 663 CCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLF 712



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 77/162 (47%), Gaps = 1/162 (0%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  M    + P + +  +L+  Y K  ++ + E   NQM   G+  +T    SM+ +Y R
Sbjct: 223 FRMMLECQVQPNVATFGMLMGLYQKKCDIKESEFAFNQMRNFGIVCET-AYASMITIYIR 281

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +  ++K EEV+  M++     ++  + +++N Y + G +E+ E +F S+       +++ 
Sbjct: 282 MNLYDKAEEVIQLMQEDKVIPNLENWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIA 341

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + + +  Y +         +F  + ++G  PD  T + +I  
Sbjct: 342 YNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMIEG 383



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/163 (18%), Positives = 77/163 (47%), Gaps = 1/163 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           LL+ +  + G++     +  Q+ K   KP+  +  +M+++Y  +G+F   E++  ++   
Sbjct: 518 LLICSCKELGHLENAIKIYTQLPKRENKPNLHITCTMIDIYSIMGRFSDGEKLYLSLRSS 577

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRR 197
               D+  YN+++ +Y + G +E    +   +  ++ + PD+      L  Y R  +  +
Sbjct: 578 GIPLDLIAYNVVVRMYVKAGSLEDACSVLDLMAEQQDIVPDIYLLRDMLRIYQRCGMVHK 637

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             +++  ++ +G   D      +I+ CS    +++++ L   M
Sbjct: 638 LADLYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEM 680



 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 41  QHTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
            +T N+ + I+    +  +   V  E+K  G+ P + S+  L+ AY   G V +   ++ 
Sbjct: 793 HYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVK 852

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQF 125
           +M +  ++PD     +M+    R  QF
Sbjct: 853 EMREKRIEPDRITYINMIRALQRNDQF 879


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++ + M   G  P    + +++   S++ N+     V+ ++ K+GL PD  + +S+++  
Sbjct: 616 SILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGL 675

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++   EK   +L  M K      I  YN LI+ + R G I +   +F S+ AK L P+ 
Sbjct: 676 CKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNC 735

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+T+ +    +        +++++M+D G  PD     VL + CS    +EQ   L   
Sbjct: 736 VTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEE 795

Query: 240 M 240
           M
Sbjct: 796 M 796



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 3/200 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA-KCEGVINQMHKSGLKPDTFVINSM 115
           +A  + EEM   G+ P    +  L+  +SK G+++  CE + N M K+ + PD F  NS+
Sbjct: 473 EAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLEN-MTKANVLPDLFCYNSL 531

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +     +G+ E+ EE    ++K     D  TY+ LI+ Y +   +EK + L Q +    L
Sbjct: 532 IKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGL 591

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+  T+T  L  Y +   + +   I + M+ +G  PD     ++I   S  + +E    
Sbjct: 592 KPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFM 651

Query: 236 LVRTMHKD-MKTALPIYFNL 254
           ++  + K+ +   L IY +L
Sbjct: 652 VLTEVEKNGLVPDLHIYSSL 671



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 99/215 (46%), Gaps = 7/215 (3%)

Query: 33  MLINFLLLQHTPNLFVFI------FSIYFSD-AHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L   + + H P+ F +       F  Y  D A  +  EM+  GI P   ++ +++    
Sbjct: 407 LLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLC 466

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           + G   +   ++ +M   GLKP+ F+   ++  + + G      E L  M K +   D+ 
Sbjct: 467 QNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLF 526

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            YN LI      G IE+ E  +  +  + L PD  T++  +  Y + +   +  ++ ++M
Sbjct: 527 CYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQM 586

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +++G  P+  T   L+      +  E+V++++++M
Sbjct: 587 LNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSM 621



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 7/207 (3%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN F++   I       + S A    E M +  + P +  +  L+   S  G + + E  
Sbjct: 488 PNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEY 547

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             Q+ K GL PD F  + +++ Y +    EK +++L  M       +  TY  L+  Y +
Sbjct: 548 YAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFK 607

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
               EK+  + QS+     KPD   +   +   SR +       +  E+   G  PD   
Sbjct: 608 SNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHI 667

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LIS       +E+   L+  M K+
Sbjct: 668 YSSLISGLCKMADMEKAVGLLDEMAKE 694



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 8/182 (4%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +  EM   G+ P    +  L+    K G + +   ++N+M K G +PDTF  + +
Sbjct: 367 AEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPL 426

Query: 116 L----NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +      Y + G F    E+L  M       +  TY I+IN   + G  ++   L + + 
Sbjct: 427 MQGHFQHYDKDGAF----ELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMI 482

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           ++ LKP+   +   +  +S++       E  E M  A   PD      LI   S+  +IE
Sbjct: 483 SEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIE 542

Query: 232 QV 233
           + 
Sbjct: 543 EA 544



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 75/178 (42%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  GI P + ++   L A+ K  +    + V  +M +     +    N M++   R G 
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 295

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E+       M     + D  TY  L+N   +GG +++ + L   +    LKP+VV + +
Sbjct: 296 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYAT 355

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  + ++       +I  EMI AG  P+      LI       Q+ + + L+  M K
Sbjct: 356 LVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIK 413



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 10/202 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A A+ +EM   G+ P +  +  L+  + K G  A+   ++N+M  +G++P+  + ++
Sbjct: 331 LKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDN 390

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI----NIYGRGGFIEKMEGLFQSL 170
           ++    ++GQ  +  ++L  M K  +  D  TY+ L+      Y + G  E    L   +
Sbjct: 391 LIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFE----LLNEM 446

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
               + P+  T+   +    +    +    + EEMI  G  P+      LI   S E  I
Sbjct: 447 RNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHI 506

Query: 231 EQVTTLVRTMHKDMKTALPIYF 252
                 +  M K     LP  F
Sbjct: 507 SLACESLENMTK--ANVLPDLF 526



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 82/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    EEM   G++P   ++  L+    K G + + + ++++M  SGLKP+  V  +++
Sbjct: 298 EAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLV 357

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G+  +  ++L  M       +   Y+ LI    + G + +   L   +     +
Sbjct: 358 DGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHR 417

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+   +  + +        E+  EM ++G  P+  T  ++I+      + ++   L
Sbjct: 418 PDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNL 477

Query: 237 VRTM 240
           +  M
Sbjct: 478 LEEM 481



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 4/214 (1%)

Query: 28  YPSHFMLINFLLLQHT-PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           +P    L++ ++L H  P L +        D+ A          T  +    +L+  Y K
Sbjct: 131 FPQANGLLHQMILAHPHPPLVLASIQRAIQDSDARSPSPSPSHSTAVLD---VLVDTYKK 187

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
            G+V     V+  M   GL P     N +L    R    E + ++   ME      D+ T
Sbjct: 188 NGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYT 247

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           Y+  +  + +    +  + +F+ +  +    + VT+   ++   R           EEM+
Sbjct: 248 YSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMV 307

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           D G  PD  T   L++      ++++   L+  M
Sbjct: 308 DYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEM 341



 Score = 41.6 bits (96), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 1/157 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S   S A  VF+ +   G+ P   ++  L+    K G++     +   M   G+ PD
Sbjct: 710 FCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPD 769

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            FV N +          E+   +   M    Y A +S ++ L+  + + G +++ E L  
Sbjct: 770 AFVYNVLATGCSDAADLEQALFLTEEMFNRGY-AHVSLFSTLVRGFCKRGRLQETEKLLH 828

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            +  + + P+  T  + +  + +         +F E+
Sbjct: 829 VMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAEL 865


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 86/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +FE M      P  +++ +++  +   G + K   + +QM K+G  P+    N 
Sbjct: 393 FETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNI 452

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y + G       +L  M+      D  TY  LI+ + RGG +E    LF  +    
Sbjct: 453 IIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHG 512

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+VVT+ + +  Y         L +F +M+++G  P  GT  ++IS  S  ++I +  
Sbjct: 513 ISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAE 572

Query: 235 TLVRTMHK 242
                M K
Sbjct: 573 NFCGKMVK 580



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 90/202 (44%), Gaps = 7/202 (3%)

Query: 43  TPNLFVF--IFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN+  +  I  IYF     ++A  + E MK  G+     ++  L++ +S+ G +     
Sbjct: 444 SPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFS 503

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + N+M + G+ P+    N+++N Y  + + +    +   M +        TYN++I+ + 
Sbjct: 504 LFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFS 563

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   I + E     +  + L P+V+T+TS +    +        +IF EM     +P+  
Sbjct: 564 KTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLC 623

Query: 216 TAKVLISACSSEDQIEQVTTLV 237
           T   LI     E Q E    L+
Sbjct: 624 TYSSLIDGLCQEGQAEDAERLL 645



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 81/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  +MK+ G  P ++++  L++  S+ G      GV ++M   GL P     ++++
Sbjct: 325 EAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALI 384

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N     G+FE    +   M       +  TYN++I  +   G+I+K   +F  +      
Sbjct: 385 NQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPS 444

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V+T+   +  Y ++      + + E M   G   D  T   LIS  S   ++E   +L
Sbjct: 445 PNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSL 504

Query: 237 VRTM 240
              M
Sbjct: 505 FNEM 508



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 80/186 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  V+ +M   G+ PT  ++  L+      G       +   M      P+T   N 
Sbjct: 358 FEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNV 417

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  +  +G  +K   +   M K   + ++ TYNI+I+IY + G++     L + +    
Sbjct: 418 IIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNG 477

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LK D  T+ + ++ +SR         +F EM++ G  P+  T   +I+   +  +++   
Sbjct: 478 LKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDAL 537

Query: 235 TLVRTM 240
            L   M
Sbjct: 538 ALFWKM 543



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 83/197 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+ M + G  P   ++  L+      G + +   ++ +M   G++P        + 
Sbjct: 256 AFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIV 315

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+  +  ++L  M+K     ++ TY  LI+   R G  E   G++  + A  L P
Sbjct: 316 SLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVP 375

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             VT+++ +     +  +   L IFE M+     P+  T  V+I    S   I++ T + 
Sbjct: 376 TAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIF 435

Query: 238 RTMHKDMKTALPIYFNL 254
             M K   +   I +N+
Sbjct: 436 DQMLKAGPSPNVITYNI 452



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 31/218 (14%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA A+F +M   G  P+  ++ ++++ +SKT  +++ E    +M K GL P+     S 
Sbjct: 534 DDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSF 593

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-------- 167
           ++   + G+     ++   M+K  Y  ++ TY+ LI+   + G  E  E L         
Sbjct: 594 IDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNV 653

Query: 168 -----------------------QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
                                  +S+  K L+P    + + L    +       L+IF+ 
Sbjct: 654 DTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDS 713

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           M+  G  P     K LI A    +  ++   + +TM K
Sbjct: 714 MVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLK 751



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 77/183 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ EM   GI P + +   ++      G V + E ++  +   G  PDTF   S++  + 
Sbjct: 189 VYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHC 248

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  +   E+   M K     +  TY+ LIN     G +E+   + + +  K ++P V 
Sbjct: 249 KNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +T  + +          +++  +M   GC P+  T   LIS  S + + E    +   M
Sbjct: 309 AYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKM 368

Query: 241 HKD 243
             D
Sbjct: 369 LAD 371



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 9/205 (4%)

Query: 44  PNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNLF F   I          +A  +   +   G  P   ++  L+  + K GN+     +
Sbjct: 200 PNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEM 259

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI-LINIYG 155
            ++M K G  P++   ++++N     G+ E+  ++L  M        +  Y I ++++  
Sbjct: 260 FDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCD 319

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
            G   E ++ L   +  +   P+V T+T+ ++  SR   +   + ++ +M+  G  P   
Sbjct: 320 AGRSCEAVK-LLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAV 378

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   LI+    E + E   T+   M
Sbjct: 379 TYSALINQLYVEGRFETALTIFEWM 403



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 2/168 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + EEM   GI PT+ ++ + + +    G   +   ++ +M K G  P+     +
Sbjct: 288 LEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTA 347

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAK 173
           +++   R G+FE    V   M          TY+ LIN +Y  G F E    +F+ + + 
Sbjct: 348 LISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRF-ETALTIFEWMLSH 406

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
              P+  T+   +  +      ++   IF++M+ AG  P+  T  ++I
Sbjct: 407 DSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIII 454



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 6/178 (3%)

Query: 63  EEMKRL---GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           E+ +RL   G  P + ++  L+      G   + + ++  M K GL+P   +  ++L   
Sbjct: 639 EDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQ 698

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +  + E   ++  +M    +   +S Y  LI    +  F +K + +FQ++  K    D 
Sbjct: 699 CKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDE 758

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL---ISACSSEDQIEQVT 234
           V WT  L    ++      LE+   M    C  +  T  +L   +SA     +I Q++
Sbjct: 759 VVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQTRVMLARELSALGCSIEIPQIS 816


>gi|357135236|ref|XP_003569217.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic-like [Brachypodium distachyon]
          Length = 644

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 94/200 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A   F+++K  G  P +  +  LL AYS+  N  K E ++  +  S L P+  ++ 
Sbjct: 234 YCEEAEVYFQKLKDEGHNPNLFHYSSLLNAYSENSNYEKAELLMKDLRSSKLIPNKVILT 293

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L +Y + G FEK +E+LT +E   +A D   Y ILI+   +GG I +   LF  +  K
Sbjct: 294 TLLKVYSKGGLFEKAKELLTELEASGFAQDEMPYCILIDALAKGGKIWEATMLFNEMKEK 353

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +K D   ++  ++A  R        ++ +E  D     D       + A  + +  E V
Sbjct: 354 GVKSDGYAFSIMISALHRAGYREEAKQLAKEFEDQNTTYDLVILNTSLRAYCNTNDTESV 413

Query: 234 TTLVRTMHKDMKTALPIYFN 253
             +++ M +   +   I FN
Sbjct: 414 MRMLKKMDELNISPDHITFN 433



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGN-VAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +++EM R G++P + ++  LL+   K     AK   +IN+++  GL+ D+ +  ++L + 
Sbjct: 170 LYDEMIRGGLSPDLFTYSTLLSGCIKLKQGYAKAMELINELNYRGLQMDSVIYGTLLAIC 229

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
                 E+ E     ++   +  ++  Y+ L+N Y      EK E L + L + +L P+ 
Sbjct: 230 ASHNYCEEAEVYFQKLKDEGHNPNLFHYSSLLNAYSENSNYEKAELLMKDLRSSKLIPNK 289

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           V  T+ L  YS+  L+ +  E+  E+  +G   D     +LI A +   +I + T L   
Sbjct: 290 VILTTLLKVYSKGGLFEKAKELLTELEASGFAQDEMPYCILIDALAKGGKIWEATMLFNE 349

Query: 240 MHK 242
           M +
Sbjct: 350 MKE 352



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 8/179 (4%)

Query: 92  KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           + E    ++   G  P+ F  +S+LN Y     +EK E ++  +       +      L+
Sbjct: 237 EAEVYFQKLKDEGHNPNLFHYSSLLNAYSENSNYEKAELLMKDLRSSKLIPNKVILTTLL 296

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
            +Y +GG  EK + L   L A     D + +   + A ++         +F EM + G  
Sbjct: 297 KVYSKGGLFEKAKELLTELEASGFAQDEMPYCILIDALAKGGKIWEATMLFNEMKEKGVK 356

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKD--------MKTALPIYFNLYGEKGVAR 262
            DG    ++ISA       E+   L +             + T+L  Y N    + V R
Sbjct: 357 SDGYAFSIMISALHRAGYREEAKQLAKEFEDQNTTYDLVILNTSLRAYCNTNDTESVMR 415



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 79/187 (42%), Gaps = 7/187 (3%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H PNLF +  + + Y     +  A  + ++++   + P       LL  YSK G   K +
Sbjct: 250 HNPNLFHYSSLLNAYSENSNYEKAELLMKDLRSSKLIPNKVILTTLLKVYSKGGLFEKAK 309

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ ++  SG   D      +++   + G+  +   +   M++    +D   ++I+I+  
Sbjct: 310 ELLTELEASGFAQDEMPYCILIDALAKGGKIWEATMLFNEMKEKGVKSDGYAFSIMISAL 369

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            R G+ E+ + L +    +    D+V   + L AY         + + ++M +    PD 
Sbjct: 370 HRAGYREEAKQLAKEFEDQNTTYDLVILNTSLRAYCNTNDTESVMRMLKKMDELNISPDH 429

Query: 215 GTAKVLI 221
            T   LI
Sbjct: 430 ITFNTLI 436



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/155 (19%), Positives = 68/155 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  E++  G       + +L+ A +K G + +   + N+M + G+K D +  + 
Sbjct: 305 FEKAKELLTELEASGFAQDEMPYCILIDALAKGGKIWEATMLFNEMKEKGVKSDGYAFSI 364

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++   R G  E+ +++    E  +   D+   N  +  Y      E +  + + +    
Sbjct: 365 MISALHRAGYREEAKQLAKEFEDQNTTYDLVILNTSLRAYCNTNDTESVMRMLKKMDELN 424

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           + PD +T+ + +  + + K+Y    +  E+M   G
Sbjct: 425 ISPDHITFNTLIRYFCKGKVYHLVYKTIEDMHTKG 459



 Score = 38.1 bits (87), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 15/201 (7%)

Query: 74  MKSH-MLLLTAYSK-------TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           M+ H ML + +YS        + N A+   V   +    ++    V NS+L    + G++
Sbjct: 105 MQEHEMLNVASYSSYFKYLGLSRNAARALQVYGSIQDQSIRVHVSVCNSVLGCLVKNGRY 164

Query: 126 EKMEEVLTAMEKGSYAADISTYNILIN--IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           +   ++   M +G  + D+ TY+ L++  I  + G+ + ME L   L  + L+ D V + 
Sbjct: 165 DSTFKLYDEMIRGGLSPDLFTYSTLLSGCIKLKQGYAKAME-LINELNYRGLQMDSVIYG 223

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + LA  +           F+++ D G  P+      L++A S     E+   L++ +   
Sbjct: 224 TLLAICASHNYCEEAEVYFQKLKDEGHNPNLFHYSSLLNAYSENSNYEKAELLMKDLRSS 283

Query: 244 M----KTALPIYFNLYGEKGV 260
                K  L     +Y + G+
Sbjct: 284 KLIPNKVILTTLLKVYSKGGL 304


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPDTFVINSM 115
           +V  EM  +G  PT   H  LL AYS++    K + ++ Q+HK     GL  +  V N++
Sbjct: 641 SVLHEMLAVGYVPTPIIHKFLLKAYSRS---RKADAIL-QIHKKLVDMGLNLNQMVYNTL 696

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + +  RLG  +K   VLT M     +ADI TYN LI  Y  G  +EK    +  +    +
Sbjct: 697 ITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGI 756

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            P++ T+ + L   S   L R   ++  EM + G  P+  T  +L+S 
Sbjct: 757 SPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSG 804



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 21/203 (10%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +  EM + G+     +  +L+  Y + G V   E ++  +   G+  D   +N++++ Y
Sbjct: 96  GLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGY 155

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR----- 174
             +G   +  +++    K     DI TYN L+N + + G + K E +   +   R     
Sbjct: 156 CEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDES 215

Query: 175 ----------------LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
                           L+P VVTWT+ +AAY + +       ++E+MI +G  PD  T  
Sbjct: 216 GVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCS 275

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            ++       ++ +   L+R M+
Sbjct: 276 SILYGLCRHGKLTEAAMLLREMY 298



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 83/159 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  +  EM  +G+ P   S+  +++A  K+G V +     +QM   G+  D  +  +
Sbjct: 287 LTEAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTT 346

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++   + G+ ++ EE+   + K +   +  TY  L++ + + G +E  E + Q +  + 
Sbjct: 347 MMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEH 406

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + P+VVT++S +  Y++K +  + +E+  +M+     P+
Sbjct: 407 VLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPN 445



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 87/207 (42%), Gaps = 7/207 (3%)

Query: 43  TPNLFVF--IFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP+   +  + + YF      +A  +  EMK  G+ P M ++ +L+    KTG + K   
Sbjct: 582 TPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVIS 641

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V+++M   G  P   +   +L  Y R  + + + ++   +       +   YN LI +  
Sbjct: 642 VLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLC 701

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R G  +K   +   +  K +  D+VT+ + +  Y       +    + +M+ +G  P+  
Sbjct: 702 RLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNIT 761

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T   L+   S+   +     LV  M +
Sbjct: 762 TYNALLEGLSTNGLMRDADKLVSEMRE 788



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ V  EM   GI+  + ++  L+  Y    +V K     +QM  SG+ P+    N++L 
Sbjct: 709 ANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLE 768

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G     +++++ M +     + +TYNIL++ +GR G       L+  +  K   P
Sbjct: 769 GLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIP 828

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
              T+   +  Y++    R+  E+  EM+  G  P+  T  VLI
Sbjct: 829 TTGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLI 872



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 8/204 (3%)

Query: 44  PNLFVF--IFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+FV+  +   YF       A   ++EMK  G+        +LL    ++G + + + +
Sbjct: 444 PNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSL 503

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           I  +   G+  D F  +S+++ Y + G       V+  M +     D+  YN L     R
Sbjct: 504 IKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLR 563

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  E  + +F  +    L PD VT+ S +  Y  +      L++  EM   G  P+  T
Sbjct: 564 LGKYEP-KSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVT 622

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
             +LI        IE+V +++  M
Sbjct: 623 YNILIGGLCKTGAIEKVISVLHEM 646



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 73/150 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V ++M++  + P + +   ++  Y+K G + K   V+ +M +  + P+ FV   +L+
Sbjct: 395 AETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLD 454

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R GQ E        M+      +   ++IL+N   R G +++ + L + + +K +  
Sbjct: 455 GYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYL 514

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           DV  ++S +  Y ++      L + +EM +
Sbjct: 515 DVFNYSSLMDGYFKEGNESAALSVVQEMTE 544



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%)

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           + V ++M + GL PD    NS++N Y   G+ E   ++L  M+      ++ TYNILI  
Sbjct: 570 KSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGG 629

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
             + G IEK+  +   + A    P  +     L AYSR +     L+I ++++D G
Sbjct: 630 LCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMG 685



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 79/177 (44%), Gaps = 1/177 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A ++ +++   GI   + ++  L+  Y K GN +    V+ +M +  ++ D    N++ 
Sbjct: 499 EAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALT 558

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               RLG++E  + V + M +     D  TYN ++N Y   G  E    L   + +  + 
Sbjct: 559 KGLLRLGKYEP-KSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVM 617

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           P++VT+   +    +     + + +  EM+  G  P     K L+ A S   + + +
Sbjct: 618 PNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAI 674



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 15/193 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A  V  +M ++ I P +  + +LL  Y +TG      G   +M   GL+ +  + + 
Sbjct: 427 LNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDI 486

Query: 115 MLNLYGRLGQFEKMEEVL-TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +LN   R G  ++ + ++   + KG Y  D+  Y+ L++ Y + G       + Q +  K
Sbjct: 487 LLNNLKRSGGMKEAQSLIKDILSKGIY-LDVFNYSSLMDGYFKEGNESAALSVVQEMTEK 545

Query: 174 RLKPDVVTWTS------RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
            ++ DVV + +      RL  Y  K        +F  MI+ G  PD  T   +++    +
Sbjct: 546 DMQFDVVAYNALTKGLLRLGKYEPK-------SVFSRMIELGLTPDCVTYNSVMNTYFIQ 598

Query: 228 DQIEQVTTLVRTM 240
            + E    L+  M
Sbjct: 599 GKTENALDLLNEM 611



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 45/95 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  EM+  G+ P   ++ +L++ + + GN      +  +M   G  P T   N ++
Sbjct: 778 DADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLI 837

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
             Y + G+  +  E+L  M       + STY++LI
Sbjct: 838 QDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLI 872



 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 79/191 (41%), Gaps = 30/191 (15%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK------------- 92
           L+ F  S + S    ++ EM   G+ P + S  LL+ +  K G++               
Sbjct: 17  LYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGYLRNSVFDHV 76

Query: 93  ---------CE--------GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
                    C+        G++++M K G+  D+   N ++  Y ++G  +  E ++  +
Sbjct: 77  TYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIMGNL 136

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
             G    D    N L++ Y   G + +   L +      +KPD+VT+ + + A+ ++   
Sbjct: 137 VGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDL 196

Query: 196 RRCLEIFEEMI 206
            +   +  E++
Sbjct: 197 AKAESVVNEIL 207



 Score = 37.4 bits (85), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 38/195 (19%), Positives = 79/195 (40%), Gaps = 4/195 (2%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + PT+ +   L+ AY K   +     +  QM  SG+ PD    +S+L    R G+  +  
Sbjct: 232 LQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAA 291

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            +L  M       +  +Y  +I+   + G + +       +  + +  D+V  T+ +   
Sbjct: 292 MLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGL 351

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
            +    +   E+F+ ++     P+  T   L+        +E   T+++ M K+      
Sbjct: 352 FKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNV 411

Query: 250 IYF----NLYGEKGV 260
           + F    N Y +KG+
Sbjct: 412 VTFSSIINGYAKKGM 426


>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 426

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 98/203 (48%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TPT  S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 80/151 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 85/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y + G   + + +   M K G++P+    N+
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   L Q +  + 
Sbjct: 190 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG 249

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 250 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 74/174 (42%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P   ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F++M   G +PD     ++++A
Sbjct: 376 EVFDKMRGLGYFPDSNVIALILNA 399



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 8/175 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +F     LG    +    L+L AY +  ++AK   +  QM  +G+ P+ F    +L 
Sbjct: 299 AHDIFN----LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILR 354

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                GQ E  E++ +   K  + +D+    +LI++Y + G ++K   + + L     K 
Sbjct: 355 TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE----KR 410

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           DVV+WTS +A Y +       L  F+EM D G +PD        SAC+    + Q
Sbjct: 411 DVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQ 465



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M   G+ PD   + S  +    +    +  ++   +    YAADIS +N L+N+Y R G
Sbjct: 437 EMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCG 496

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             E+   LF+ +  K    D +TW   ++ + + +LY++ L +F +M  AG   +  T  
Sbjct: 497 RSEEAFSLFREIEHK----DEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFI 552

Query: 219 VLISACSSEDQIEQVTTL----VRTMHKDMKTALPIYFNLYGEKG 259
             ISA ++   I+Q   +    V+T H           +LYG+ G
Sbjct: 553 SAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCG 597



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 4/152 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L++ +++ G+      + ++M  SGL+PD   + S+L     +G  +K +++ + + K  
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG 275

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + D  T   L+++Y + G IE    +F        + +VV W   L AY +     +  
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIETAHDIFNLGD----RTNVVLWNLMLVAYGQISDLAKSF 331

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           EIF +M   G +P+  T   ++  C+   QIE
Sbjct: 332 EIFGQMQATGIHPNQFTYPCILRTCTCTGQIE 363



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 4/151 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  VF +M + G    + + +  ++A +   ++ + + V  +  K+G   +T V N+
Sbjct: 529 YKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANA 588

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++LYG+ G  E  + + + M   S   ++S   I+ +    G  +E ++ LF  +  + 
Sbjct: 589 LISLYGKCGSIEDAKMIFSEM---SLRNEVSWNTIITSCSQHGRGLEALD-LFDQMKQEG 644

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           LKP+ VT+   LAA S   L    L  F+ M
Sbjct: 645 LKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 675



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 4/153 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  ++ +M    + PT      +L+A +K    A+   +  Q++K     +TFV N+++
Sbjct: 127 EAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALI 186

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            LY   G F+  E V   M       D  T+N LI+ + + G  E    +F  +    L+
Sbjct: 187 ALYLGFGSFKLAERVFCDM----LFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           PD VT  S LAA +     ++  ++   ++ AG
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAG 275



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 88/175 (50%), Gaps = 8/175 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+E+     +    S + +L+ Y+++G   +   + +QMH + + P  +V++S+L+
Sbjct: 97  ARQVFKELS----SRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLS 152

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +   F +   +   + K ++ ++    N LI +Y   G  +  E +F  +    L  
Sbjct: 153 ACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDM----LFC 208

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           D VT+ + ++ +++       L+IF+EM  +G  PD  T   L++AC+S   +++
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  +K  G+  ++ +   LL    K G V     +  ++ +SG++ + + +N M+N   +
Sbjct: 207 FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCK 266

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
             + E  +  L+ ME+     D+ TYN LIN Y R G +E+   L  S+  K LKP V T
Sbjct: 267 NQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFT 326

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           + + +    +   Y R   + +EM+  G  PD  T  +L+  C   D +
Sbjct: 327 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 375



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 87/167 (52%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  +   +M+  G+ P + ++  L+ AY + G + +   +++ M   GLKP  F  N+++
Sbjct: 272 NTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAII 331

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   + G++ + + VL  M K   + D +TYNIL+    R   +   E +F  +P++ + 
Sbjct: 332 NGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVV 391

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD+V++++ +   S+     + L+ F +M +AG  PD     +LI  
Sbjct: 392 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGG 438



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +F EM   G+ P   +   L+  YSK GN+ K   +   M +  LKPD    N+
Sbjct: 480 LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 539

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + +  + EK+ E+   M       +  +Y ILIN Y   G + +   L+  +  K 
Sbjct: 540 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 599

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +  ++T  + +  Y R     +  E    M+  G  PDG T   LI+    E+ +++  
Sbjct: 600 FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAF 659

Query: 235 TLVRTMH 241
            LV  M 
Sbjct: 660 ALVNKME 666



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 82/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM   G+ P + S   L+   SK G + +       M  +GL PD  +   ++
Sbjct: 377 DAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 436

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R G   +  +V   M +     D+ TYN ++N   +   + + + LF  +  + + 
Sbjct: 437 GGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 496

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+T+ +  YS+     + + +FE MI     PD  T   LI       ++E+V  L
Sbjct: 497 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 556

Query: 237 VRTM 240
              M
Sbjct: 557 WNDM 560



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + + M   G+ P + ++  ++    KTG   + +GV+++M K G+ PDT   N 
Sbjct: 305 LEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNI 364

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    R       E +   M       D+ +++ LI +  + G +++    F+ +    
Sbjct: 365 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 424

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD V +T  +  + R  +    L++ +EM++ GC  D  T   +++    E  + +  
Sbjct: 425 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEAD 484

Query: 235 TLVRTM 240
            L   M
Sbjct: 485 ELFTEM 490



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 5/171 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +MK  G+ P    + +L+  + + G +++   V ++M + G   D    N++LN   +
Sbjct: 417 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 476

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
                + +E+ T M +     D  T+  LIN Y + G + K   LF+ +  + LKPDVVT
Sbjct: 477 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 536

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-----ACSSE 227
           + + +  + +     +  E++ +MI    YP+  +  +LI+      C SE
Sbjct: 537 YNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSE 587



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 78/158 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +++EM   G   T+ +   ++  Y + GN  K +  ++ M   G+ PD    N++
Sbjct: 586 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 645

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + +    ++   ++  ME      D+ TYN+++N + R G +++ E +   +  + +
Sbjct: 646 INGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGV 705

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            PD  T+TS +  +  +   +    + +EM+  G  PD
Sbjct: 706 NPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 4/190 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++E+ R G+   + +  +++ A  K   +   +  ++ M + G+ PD    N+++N
Sbjct: 238 AWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLIN 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  E+  E++ +M        + TYN +IN   + G   + +G+   +    + P
Sbjct: 298 AYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSP 357

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+   L    R         IF+EM   G  PD  +   LI   S    ++Q     
Sbjct: 358 DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYF 417

Query: 238 RTMHKDMKTA 247
           R    DMK A
Sbjct: 418 R----DMKNA 423



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            + ++ +M    I P   S+ +L+  Y   G V++   + ++M + G +      N+++ 
Sbjct: 553 VNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVK 612

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K +E L+ M       D  TYN LIN + +   +++   L   +    L P
Sbjct: 613 GYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLP 672

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           DV+T+   L  +SR+   +    I  +MI+ G  PD  T   LI+   +++ +++
Sbjct: 673 DVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKE 727



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 76/154 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  V +EM   G    + ++  +L    K   +++ + +  +M + G+ PD +   ++
Sbjct: 446 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 505

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y + G   K   +   M + +   D+ TYN LI+ + +G  +EK+  L+  + ++R+
Sbjct: 506 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 565

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P+ +++   +  Y           +++EM++ G
Sbjct: 566 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 599


>gi|414881861|tpg|DAA58992.1| TPA: hypothetical protein ZEAMMB73_732512 [Zea mays]
          Length = 642

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 97/200 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A   F++MK  G +P +  +  LL AYS+  +  K E ++  +  SGL P+  ++ 
Sbjct: 235 YCEEAEVYFQKMKDEGHSPNLFHYSSLLNAYSENSDYGKAELLMKDLRSSGLTPNKVMLT 294

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L +Y + G FEK + +LT +E   +A D   Y ILI+   +GG I++   LF  +  K
Sbjct: 295 TLLKVYSKGGLFEKAKGLLTELEASGFAQDEMPYCILIDGLVKGGKIQEANILFNEMKEK 354

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +K D   ++  ++A  R   ++   ++ +E        D       +    S + +E V
Sbjct: 355 GVKSDGYAFSIMISALHRGGHHQESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESV 414

Query: 234 TTLVRTMHKDMKTALPIYFN 253
             +++ M +   +   I FN
Sbjct: 415 MRMLKKMDESNISPDNITFN 434



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 85/187 (45%), Gaps = 7/187 (3%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H+PNLF +  + + Y     +  A  + ++++  G+TP       LL  YSK G   K +
Sbjct: 251 HSPNLFHYSSLLNAYSENSDYGKAELLMKDLRSSGLTPNKVMLTTLLKVYSKGGLFEKAK 310

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           G++ ++  SG   D      +++   + G+ ++   +   M++    +D   ++I+I+  
Sbjct: 311 GLLTELEASGFAQDEMPYCILIDGLVKGGKIQEANILFNEMKEKGVKSDGYAFSIMISAL 370

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            RGG  ++ + L +   ++    D+V   + L  Y         + + ++M ++   PD 
Sbjct: 371 HRGGHHQESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESVMRMLKKMDESNISPDN 430

Query: 215 GTAKVLI 221
            T   LI
Sbjct: 431 ITFNTLI 437



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 1/181 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSK-TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +++EM R G++P   ++  LL    K      K  G+IN+M   GL+ D  +  ++L + 
Sbjct: 171 LYDEMIREGLSPDPFTYSTLLAGCMKLKQGYTKAMGLINEMKSRGLQMDIVIYGTLLAIC 230

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
                 E+ E     M+   ++ ++  Y+ L+N Y       K E L + L +  L P+ 
Sbjct: 231 ASHNYCEEAEVYFQKMKDEGHSPNLFHYSSLLNAYSENSDYGKAELLMKDLRSSGLTPNK 290

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           V  T+ L  YS+  L+ +   +  E+  +G   D     +LI       +I++   L   
Sbjct: 291 VMLTTLLKVYSKGGLFEKAKGLLTELEASGFAQDEMPYCILIDGLVKGGKIQEANILFNE 350

Query: 240 M 240
           M
Sbjct: 351 M 351



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 68/169 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           ++ A  +  EMK  G+   +  +  LL   +      + E    +M   G  P+ F  +S
Sbjct: 201 YTKAMGLINEMKSRGLQMDIVIYGTLLAICASHNYCEEAEVYFQKMKDEGHSPNLFHYSS 260

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN Y     + K E ++  +       +      L+ +Y +GG  EK +GL   L A  
Sbjct: 261 LLNAYSENSDYGKAELLMKDLRSSGLTPNKVMLTTLLKVYSKGGLFEKAKGLLTELEASG 320

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              D + +   +    +    +    +F EM + G   DG    ++ISA
Sbjct: 321 FAQDEMPYCILIDGLVKGGKIQEANILFNEMKEKGVKSDGYAFSIMISA 369



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 1/129 (0%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVLTAMEKGSYAADI 144
           K G +     + ++M + GL PD F  +++L    +L Q + K   ++  M+      DI
Sbjct: 161 KNGRLDSSFKLYDEMIREGLSPDPFTYSTLLAGCMKLKQGYTKAMGLINEMKSRGLQMDI 220

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
             Y  L+ I     + E+ E  FQ +  +   P++  ++S L AYS    Y +   + ++
Sbjct: 221 VIYGTLLAICASHNYCEEAEVYFQKMKDEGHSPNLFHYSSLLNAYSENSDYGKAELLMKD 280

Query: 205 MIDAGCYPD 213
           +  +G  P+
Sbjct: 281 LRSSGLTPN 289



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/174 (17%), Positives = 73/174 (41%), Gaps = 7/174 (4%)

Query: 43  TPN--LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN  +   +  +Y     F  A  +  E++  G       + +L+    K G + +   
Sbjct: 287 TPNKVMLTTLLKVYSKGGLFEKAKGLLTELEASGFAQDEMPYCILIDGLVKGGKIQEANI 346

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + N+M + G+K D +  + M++   R G  ++ +++    E  + + D+   N  +  Y 
Sbjct: 347 LFNEMKEKGVKSDGYAFSIMISALHRGGHHQESKQLAKEFESENASYDLVMLNTSLRTYC 406

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
               +E +  + + +    + PD +T+ + +  +   K+     +  E+M   G
Sbjct: 407 STNDMESVMRMLKKMDESNISPDNITFNTLIRYFCNAKVCHLAYKTVEDMHAKG 460


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 2/172 (1%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           ITP   S  +++  + K G +     ++++M + G+K +    N +L+ Y R     ++ 
Sbjct: 131 ITPLSAS--VVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVA 188

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           EVL  ME G     + TY IL++     G I K+E +F  +  K +  DV  +++ + AY
Sbjct: 189 EVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAY 248

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            R    RR  E+F+E +  G  P+  T   LI+      QIE    L+  M 
Sbjct: 249 CRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQ 300



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 83/179 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +   M   G+     S+  L++ +SK G++ +   +   M   G +P     N 
Sbjct: 359 MEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNV 418

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ Y + G   + E     MEK     D+ TY  L++ +   G ++    LF+ +  + 
Sbjct: 419 MIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRG 478

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            KP+VV +T+ ++  +++       + ++ M+ AG  PD     +L+ +  ++ + +++
Sbjct: 479 AKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTDKRKDEI 537



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V +EM+  G+ PT+ ++ +L+   S  G+++K E V +++ +  +  D +  ++++N Y 
Sbjct: 190 VLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYC 249

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G   +  EV           +  TY  LIN + + G IE  E L   +  + +  + +
Sbjct: 250 RAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQI 309

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + +  Y R  +  + LEI   M   G   D  T   L       +++E    L+  M
Sbjct: 310 IFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIM 369

Query: 241 HKD 243
            ++
Sbjct: 370 TEN 372



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 81/185 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+E    GI P  +++  L+  + K G +   E ++  M   G+  +  + N+M++
Sbjct: 257 ASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMID 316

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  +K  E+   ME+     D+ TYN L     R   +E  + L   +    ++ 
Sbjct: 317 GYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVES 376

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V++T+ ++ +S++        +F +M   G  P   T  V+I        I +     
Sbjct: 377 NYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFK 436

Query: 238 RTMHK 242
           + M K
Sbjct: 437 KEMEK 441



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 85/187 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S   +VF+E+KR  +   +  +  ++ AY + GNV +   V ++   +G++P+     +
Sbjct: 219 ISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGA 278

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + ++GQ E  E +LT M+      +   +N +I+ Y R G ++K   +   +    
Sbjct: 279 LINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMG 338

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ DV T+ +      R        ++   M + G   +  +   LIS  S E  + +  
Sbjct: 339 IQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEAR 398

Query: 235 TLVRTMH 241
            L R M 
Sbjct: 399 RLFRDME 405



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 63/137 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  + +EM R G+      +  LL  Y++  N A+   V+ +M   G++P       
Sbjct: 149 MDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGTYTI 208

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++     G   K+E V   +++ + A D+  Y+ +IN Y R G + +   +F       
Sbjct: 209 LVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNG 268

Query: 175 LKPDVVTWTSRLAAYSR 191
           ++P+  T+ + +  + +
Sbjct: 269 IEPNERTYGALINGFCK 285



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 78/169 (46%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+R+GI   + ++  L     +   +   + +++ M ++G++ +     ++++++ + G 
Sbjct: 334 MERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGD 393

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   +   ME       + TYN++I+ Y + G I + E   + +  K L PDV T+ +
Sbjct: 394 MVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAA 453

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +  +         L +FEEM   G  P+      LIS  + E + E+ 
Sbjct: 454 LVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEA 502


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 88/185 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A ++F EM+  GITP   ++  L+    K+  ++    +++QMH  G   D     S 
Sbjct: 327 DEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSF 386

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +  Q +K   ++  ++      +I+TYNILI+   + G  E  + +FQ L  K  
Sbjct: 387 LHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGY 446

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           K  V T+   +     + L+   + + E+M D GC PD  T + +I A    D+  +   
Sbjct: 447 KVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEK 506

Query: 236 LVRTM 240
           L+R M
Sbjct: 507 LLREM 511



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 68/155 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  + ++M   G    + ++   L A  K   V K   ++ ++   G++P+    N 
Sbjct: 361 ISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNI 420

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G+FE  + +   +    Y   + TYNI+IN     G  ++   L + +    
Sbjct: 421 LIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNG 480

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
             PDVVT+ + + A  +     +  ++  EMI  G
Sbjct: 481 CTPDVVTYETIIRALFKNDENHKAEKLLREMIARG 515



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 18/186 (9%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A+ ++ +M    ++P + +   L+  +   G   +  G+ ++M  + + PD    N +
Sbjct: 205 TEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNIL 264

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G  ++ + VL  M K     +++  N             K + +F  +  +R+
Sbjct: 265 VDALCKEGSTKETKNVLAVMMK-----EVNQVN-------------KAKHVFNIIGKRRV 306

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV ++T  +    + K+    L +F EM   G  PD  T   LI      ++I     
Sbjct: 307 TPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWE 366

Query: 236 LVRTMH 241
           L+  MH
Sbjct: 367 LLDQMH 372



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 24/222 (10%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++  F   IY       F +A  +F EM    I P + +  +L+ A  K G+  + + 
Sbjct: 220 SPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKN 279

Query: 96  V-------INQMHKS-------GLKPDTFVINSMLNLYGRLGQFEKMEEVLT---AMEKG 138
           V       +NQ++K+       G +  T  ++S   +  RL + + ++E L+    M   
Sbjct: 280 VLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCK 339

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               D  TY+ LI+   +   I     L   + A+    DV+T+TS L A  +     + 
Sbjct: 340 GITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKA 399

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + + +++ D G  P+  T  +LI     E + E    + + +
Sbjct: 400 VALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDL 441



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/206 (17%), Positives = 88/206 (42%), Gaps = 2/206 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +V  ++ ++G  P   +   L+      G V +     + +   G + +      ++N
Sbjct: 102 AFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILIN 161

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G+     +VL  ++      ++  Y+ +I+   +   + +   L+  +  K++ P
Sbjct: 162 GLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSP 221

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+++ +  +     ++    +F EM+     PD  T  +L+ A   E   ++   ++
Sbjct: 222 DVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVL 281

Query: 238 RTMHKDMKTALPI--YFNLYGEKGVA 261
             M K++         FN+ G++ V 
Sbjct: 282 AVMMKEVNQVNKAKHVFNIIGKRRVT 307



 Score = 44.3 bits (103), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 3/165 (1%)

Query: 11  LCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGI 70
           LC ++R  H+W    L    H       ++ +T  L     +     A A+ +++K  GI
Sbjct: 355 LCKSERISHAWE---LLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGI 411

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P + ++ +L+    K G     + +   +   G K   +  N M+N     G F++   
Sbjct: 412 QPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMT 471

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +L  ME      D+ TY  +I    +     K E L + + A+ L
Sbjct: 472 LLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREMIARGL 516


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 88/184 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM + G  P   ++  L+  Y K G + K   + NQM + GL P+     ++ 
Sbjct: 268 EADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALA 327

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+ +   E+L  M +     +ISTYN ++N   + G I +   L + +    L 
Sbjct: 328 DGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLH 387

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD +T+T+ + AY +     +  E+  EM+D G  P   T  VL++      ++E    L
Sbjct: 388 PDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERL 447

Query: 237 VRTM 240
           ++ M
Sbjct: 448 LKWM 451



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 6/188 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +  EM R G+   + ++  ++    K GN+ +   ++ +M ++GL PDT    ++++
Sbjct: 339 ANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMD 398

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+  K  E+L  M        + T+N+L+N     G +E  E L + +  K + P
Sbjct: 399 AYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMP 458

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTL 236
           +  T+ S +  Y  +   R   EI+  M   G  PD  T  +LI   C + +  E     
Sbjct: 459 NAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKE----- 513

Query: 237 VRTMHKDM 244
              +HK+M
Sbjct: 514 AWFLHKEM 521



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +   M+  G  P + S+  ++  Y   G + K   ++ +M   GLKP+ +  +S++
Sbjct: 128 EAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSII 187

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            L  + G+  + E+VL  M K     D   Y  LI+ + + G  +    LF  + A+ + 
Sbjct: 188 LLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIV 247

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD + +++ +   S         ++F EMI  G  PD  T   LI  
Sbjct: 248 PDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDG 294



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 87/183 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F EM+   I P   +   L+   S +G V + + + N+M K G +PD     ++++
Sbjct: 234 AYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALID 293

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +LG+ +K   +   M +     ++ TY  L +   + G ++    L   +  K L+ 
Sbjct: 294 GYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQL 353

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++ T+ + +    +     + +++ EEM +AG +PD  T   L+ A     ++ +   L+
Sbjct: 354 NISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELL 413

Query: 238 RTM 240
           R M
Sbjct: 414 REM 416



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 84/180 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM+  G+ P + ++  ++    K+G V + E V+ +M K G+ PD  +  ++++ + 
Sbjct: 167 LVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFC 226

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +LG  +   ++ + ME      D   ++ LI      G + + + LF  +  K  +PD V
Sbjct: 227 KLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEV 286

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T+ +  Y +    ++   +  +M+  G  P+  T   L        +++    L+  M
Sbjct: 287 TYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEM 346



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 89/208 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + EEMK  G+ P   ++  L+ AY KTG + K   ++ +M   GL+P     N ++N
Sbjct: 374 AVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMN 433

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ E  E +L  M +     + +TYN ++  Y     +     +++ + A+ + P
Sbjct: 434 GLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVP 493

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+   +  + + +  +    + +EM++        +   LI       ++ +   L 
Sbjct: 494 DSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLF 553

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSNL 265
             M ++   A    +NL+ +      N+
Sbjct: 554 EEMRREGLVASAEIYNLFVDMNYEEGNM 581



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 85/182 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF E  +LG+    +S+ +L+ +  + G + +   ++ +M   G  PD     ++++ Y 
Sbjct: 97  VFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYC 156

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            +G+ +K+ +++  M+      ++ TY+ +I +  + G + + E + + +  + + PD V
Sbjct: 157 HVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHV 216

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +T+ +  + +    +   ++F EM      PD      LI   S   ++ +   L   M
Sbjct: 217 IYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEM 276

Query: 241 HK 242
            K
Sbjct: 277 IK 278



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 7/206 (3%)

Query: 44  PNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL+ +   I          +   V  EM + G+ P    +  L+  + K GN      +
Sbjct: 178 PNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKL 237

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M    + PD+   ++++      G+  + +++   M K  +  D  TY  LI+ Y +
Sbjct: 238 FSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCK 297

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G ++K   L   +    L P+VVT+T+      +        E+  EM   G   +  T
Sbjct: 298 LGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNIST 357

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK 242
              +++       I Q   L+  M +
Sbjct: 358 YNTIVNGLCKAGNILQAVKLMEEMKE 383


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 89/187 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F E+   G  P   ++  LL A++K GNV K E    Q+ K+G K +    N+M+
Sbjct: 346 EAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMI 405

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++YG++G+ +    +   M       D  TY ++I+  G+   I +   + + +    LK
Sbjct: 406 HMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLK 465

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P ++ +++ + AY++          F+ MI +G  PD     V++   +     E++  L
Sbjct: 466 PTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCL 525

Query: 237 VRTMHKD 243
            R M  D
Sbjct: 526 YRKMMND 532



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 37/230 (16%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK--CEGVINQMHKSGL 105
           V+  S  F DA  + + M   GI P + S   L+ A SK+G +A      ++ ++ +SGL
Sbjct: 230 VYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGL 289

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    N++++   +    E    V   M       D+ TYN +++++GR G  E+ E 
Sbjct: 290 RPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAER 349

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRK----KLYRRCLE--------------------- 200
           LF+ L  K   PD +T+ S L A++++    K+   C +                     
Sbjct: 350 LFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYG 409

Query: 201 ----------IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                     +++EM   GC PD  T  V+I +    ++I +   ++  M
Sbjct: 410 KMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDM 459



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  VFE+M      P + ++  +++ + + G   + E +  ++ + G  PD    NS
Sbjct: 309 LEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNS 368

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + + G  +K+E     + K  +  +  TYN +I++YG+ G ++   GL+  + A  
Sbjct: 369 LLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMG 428

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
             PD VT+T  + +  +        ++ E+M DAG  P
Sbjct: 429 CTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKP 466



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 89/194 (45%)

Query: 48   VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
              I      + + V EE++ +    +  + +LLL A++K G+V +   + N M  +G  P
Sbjct: 824  ALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLP 883

Query: 108  DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
            +  +  SM++L     +F  +E ++  ME   +  D++  N L+N+Y   G  ++   ++
Sbjct: 884  NMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVY 943

Query: 168  QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
            +S+    L+PD  T+ + +  Y R         +  EM   G  P   + K L++A +  
Sbjct: 944  RSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKA 1003

Query: 228  DQIEQVTTLVRTMH 241
            +  EQ   +   M 
Sbjct: 1004 ELREQADQIFEEMR 1017



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 98/219 (44%), Gaps = 8/219 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  VF  ++  G   T++    ++  Y+++G       +++ MH  G+ PD    N++
Sbjct: 205 SIAEEVF--LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTL 262

Query: 116 LNLYGRLGQFEK--MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +N   + G        ++L  + +     D+ TYN LI+   +   +E    +F+ + A 
Sbjct: 263 INARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIAS 322

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PD+ T+ + ++ + R         +F E+++ G  PD  T   L+ A + E  +++V
Sbjct: 323 ECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKV 382

Query: 234 ----TTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY 268
                 LV+   K  +       ++YG+ G     +G Y
Sbjct: 383 EHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLY 421



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 17/182 (9%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++EM+ +G TP   ++ +++ +  K   +A+   V+  M  +GLKP     ++++ 
Sbjct: 417 AVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALIC 476

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+    E     M       D   Y ++++++ R G  EKM  L++ +     +P
Sbjct: 477 AYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRP 536

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM---------------IDAGCYPDGGTAKVLIS 222
           D   +   L A +++       E+ ++M               I A C   G  AK+L  
Sbjct: 537 DDDMYQVLLVALAKEDKCEEIEEVIQDMELLCRMNLGIISTMLIKARCVSQG--AKLLKK 594

Query: 223 AC 224
           AC
Sbjct: 595 AC 596



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  V E+M   G+ PT+ +   L+ AY+K G  A  E   + M  SG+KPD      
Sbjct: 449 IAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLV 508

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           ML+++ R G  EKM  +   M   +Y  D   Y +L+    +    E++E + Q +
Sbjct: 509 MLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDM 564



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +FEEM+          + +++  Y   GN +K E ++  M + G++P    ++ ++ 
Sbjct: 1009 ADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMT 1068

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--L 175
             YG  GQ  + E VL  ++  S       Y+ + + Y + G  +   G  + L  KR  +
Sbjct: 1069 SYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNG--DYNHGTTKLLEMKRDGV 1126

Query: 176  KPDVVTWTSRLAAYS 190
            +PD   WT  + A S
Sbjct: 1127 EPDHQVWTCFIRAAS 1141



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/186 (18%), Positives = 78/186 (41%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            F D   +  EM+  G  P +     LL  Y+  GN  +   V   + ++GL+PD    N+
Sbjct: 901  FRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNT 960

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++ +Y R  + E+   +L  M K      + +Y  L+    +    E+ + +F+ + +K 
Sbjct: 961  LIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKS 1020

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             + +   +   +  Y     + +   +   M + G  P   T  +L+++  +  Q  +  
Sbjct: 1021 YQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAE 1080

Query: 235  TLVRTM 240
             ++  +
Sbjct: 1081 NVLNNL 1086



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 75/161 (46%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AY+++G   K   V + M K+G  P    +N M+      G+ +++  V+  ++  +
Sbjct: 786 LIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMN 845

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +    ST  +L++ + + G + ++  ++  + A    P++  + S ++       +R   
Sbjct: 846 FKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVE 905

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +  EM  AG  PD      L++  ++    ++ T + R++
Sbjct: 906 LMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSI 946



 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
            I + +FS+A  VF +M+ +GI  +   +  +++ Y K G       +++   +SG+  +
Sbjct: 685 LIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGIPLN 744

Query: 109 TFVINS-MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
                  ++  YG++  +++ E ++  + + S   D   +N LI+ Y   G  EK   +F
Sbjct: 745 ILSCRVIIIEAYGKIKLWQQAEILVKGLRQAS-GIDRRIWNALIHAYAESGLYEKARAVF 803

Query: 168 QSL 170
            ++
Sbjct: 804 DNM 806



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 43/96 (44%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            S A  +   MK  GI PT+ +  +L+T+Y   G   + E V+N +  S L+  T   +++
Sbjct: 1042 SKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTV 1101

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
             + Y + G +      L  M++     D   +   I
Sbjct: 1102 FDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFI 1137



 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 2/147 (1%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT-AMEKGSYAADISTYNILINIY 154
           V   M   G++    +  S+++ Y +LG  E    ++  A++ G     +S   I+I  Y
Sbjct: 697 VFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGIPLNILSCRVIIIEAY 756

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           G+    ++ E L + L  +    D   W + + AY+   LY +   +F+ MI  G  P  
Sbjct: 757 GKIKLWQQAEILVKGL-RQASGIDRRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTV 815

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMH 241
            +   ++ A   + +++++  +V  + 
Sbjct: 816 DSVNGMMRALIVDGRLDELYVVVEELQ 842


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 7/193 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  VFE+   +G    + S   LLTA  +     +   +   M  S +KPD   + +
Sbjct: 453 LNDALQVFED---IGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTN 509

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L   G++  +E   ++   + K     DIS  N LIN+Y + G +E    +F S+    
Sbjct: 510 VLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIG--- 566

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD+++W+S +  Y++    +   E+F  M   G  P+  T   +++ACS    +E+  
Sbjct: 567 -NPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGL 625

Query: 235 TLVRTMHKDMKTA 247
            L RTM +D + +
Sbjct: 626 KLYRTMQEDYRIS 638



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +  +   S LK  T+    ++N    L   E   ++   M   +Y  D+   N ++++YG
Sbjct: 87  IFQKCSSSPLKSVTYT--HLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYG 144

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +++   +F S+P K    +VV+WTS ++ YSR       + ++ +M+ +G  PD  
Sbjct: 145 KCGSLKEARNMFDSMPLK----NVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHF 200

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
           T   ++ +CS  D  +    L R +H
Sbjct: 201 TFGSIVKSCSGLDDFK----LARQLH 222



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++ YS+ G       +  QM +SG  PD F   S++     L  F+   ++   + K  
Sbjct: 170 MISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSE 229

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           + AD+   N LI++Y +   +     +F  +  K    D+++W S +A +S+       L
Sbjct: 230 FGADLIAQNALISMYTKFSQMADAINVFSRIIIK----DLISWGSMIAGFSQLGYELEAL 285

Query: 200 EIFEEMIDAGCY-PDGGTAKVLISACS 225
             F EM+    Y P+        SACS
Sbjct: 286 CHFREMLSQSVYQPNEFVFGSAFSACS 312



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           + +S  +P+ FV  S  +   +L + +   ++     K    +D+     L ++Y + GF
Sbjct: 292 LSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGF 351

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E    +F  +     KPD+V W + +A ++     +     F +M   G  P+  T   
Sbjct: 352 LESARTVFYHIE----KPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLS 407

Query: 220 LISACS 225
           L+ ACS
Sbjct: 408 LLCACS 413



 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  VF  +++    P + +   ++  ++   N  +     +QM  +GL P+   + 
Sbjct: 351 FLESARTVFYHIEK----PDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVL 406

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+L             +V + + K  +  DI   N L+++Y +   +     +F+ +   
Sbjct: 407 SLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGN- 465

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISA 223
             K D+V+W + L A  ++      L + + M  +   PD  T   VL+S+
Sbjct: 466 --KADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSS 514



 Score = 38.9 bits (89), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P + S   L+  Y++ G   +   +   M   G+KP+      +L     +G  E+  +
Sbjct: 567 NPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLK 626

Query: 131 VLTAMEKGSYAADISTY-NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           +   M++    +    + + ++++  R G ++  E   + +P     PDVV W + LAA
Sbjct: 627 LYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMP---FVPDVVVWKTLLAA 682


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  +K  G+  ++ +   LL    K G V     +  ++ +SG++ + + +N M+N   +
Sbjct: 50  FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCK 109

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
             + E  +  L+ ME+     D+ TYN LIN Y R G +E+   L  S+  K LKP V T
Sbjct: 110 NQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFT 169

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           + + +    +   Y R   + +EM+  G  PD  T  +L+  C   D +
Sbjct: 170 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 218



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 87/169 (51%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +  +   +M+  G+ P + ++  L+ AY + G + +   +++ M   GLKP  F  N+
Sbjct: 113 IENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNA 172

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G++ + + VL  M K   + D +TYNIL+    R   +   E +F  +P++ 
Sbjct: 173 IINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 232

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + PD+V++++ +   S+     + L+ F +M +AG  PD     +LI  
Sbjct: 233 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGG 281



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +F EM   G+ P   +   L+  YSK GN+ K   +   M +  LKPD    N+
Sbjct: 323 LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 382

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + +  + EK+ E+   M       +  +Y ILIN Y   G + +   L+  +  K 
Sbjct: 383 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 442

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +  ++T  + +  Y R     +  E    M+  G  PDG T   LI+    E+ +++  
Sbjct: 443 FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAF 502

Query: 235 TLVRTMH 241
            LV  M 
Sbjct: 503 ALVNKME 509



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 82/184 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM   G+ P + S   L+   SK G + +       M  +GL PD  +   ++
Sbjct: 220 DAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 279

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R G   +  +V   M +     D+ TYN ++N   +   + + + LF  +  + + 
Sbjct: 280 GGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 339

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+T+ +  YS+     + + +FE MI     PD  T   LI       ++E+V  L
Sbjct: 340 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 399

Query: 237 VRTM 240
              M
Sbjct: 400 WNDM 403



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + + M   G+ P + ++  ++    KTG   + +GV+++M K G+ PDT   N 
Sbjct: 148 LEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNI 207

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    R       E +   M       D+ +++ LI +  + G +++    F+ +    
Sbjct: 208 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 267

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD V +T  +  + R  +    L++ +EM++ GC  D  T   +++    E  + +  
Sbjct: 268 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEAD 327

Query: 235 TLVRTM 240
            L   M
Sbjct: 328 ELFTEM 333



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 5/178 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A   F +MK  G+ P    + +L+  + + G +++   V ++M + G   D    N+
Sbjct: 253 LDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNT 312

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN   +     + +E+ T M +     D  T+  LIN Y + G + K   LF+ +  + 
Sbjct: 313 ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN 372

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-----ACSSE 227
           LKPDVVT+ + +  + +     +  E++ +MI    YP+  +  +LI+      C SE
Sbjct: 373 LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSE 430



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 78/158 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +++EM   G   T+ +   ++  Y + GN  K +  ++ M   G+ PD    N++
Sbjct: 429 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 488

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + +    ++   ++  ME      D+ TYN+++N + R G +++ E +   +  + +
Sbjct: 489 INGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGV 548

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            PD  T+TS +  +  +   +    + +EM+  G  PD
Sbjct: 549 NPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 4/190 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +++E+ R G+   + +  +++ A  K   +   +  ++ M + G+ PD    N+++N
Sbjct: 81  AWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLIN 140

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  E+  E++ +M        + TYN +IN   + G   + +G+   +    + P
Sbjct: 141 AYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSP 200

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+   L    R         IF+EM   G  PD  +   LI   S    ++Q     
Sbjct: 201 DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYF 260

Query: 238 RTMHKDMKTA 247
           R    DMK A
Sbjct: 261 R----DMKNA 266



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            + ++ +M    I P   S+ +L+  Y   G V++   + ++M + G +      N+++ 
Sbjct: 396 VNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVK 455

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K +E L+ M       D  TYN LIN + +   +++   L   +    L P
Sbjct: 456 GYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLP 515

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           DV+T+   L  +SR+   +    I  +MI+ G  PD  T   LI+   +++ +++
Sbjct: 516 DVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKE 570



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 76/154 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  V +EM   G    + ++  +L    K   +++ + +  +M + G+ PD +   ++
Sbjct: 289 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 348

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y + G   K   +   M + +   D+ TYN LI+ + +G  +EK+  L+  + ++R+
Sbjct: 349 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 408

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P+ +++   +  Y           +++EM++ G
Sbjct: 409 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 442


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 7/193 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  VFE+   +G    + S   LLTA  +     +   +   M  S +KPD   + +
Sbjct: 453 LNDALQVFED---IGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTN 509

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L   G++  +E   ++   + K     DIS  N LIN+Y + G +E    +F S+    
Sbjct: 510 VLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIG--- 566

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD+++W+S +  Y++    +   E+F  M   G  P+  T   +++ACS    +E+  
Sbjct: 567 -NPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGL 625

Query: 235 TLVRTMHKDMKTA 247
            L RTM +D + +
Sbjct: 626 KLYRTMQEDYRIS 638



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +  +   S LK  T+    ++N    L   E   ++   M   +Y  D+   N ++++YG
Sbjct: 87  IFQKCSSSPLKSVTYT--HLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYG 144

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +++   +F S+P K    +VV+WTS ++ YSR       + ++ +M+ +G  PD  
Sbjct: 145 KCGSLKEARNMFDSMPLK----NVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHF 200

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
           T   ++ +CS  D  +    L R +H
Sbjct: 201 TFGSIVKSCSGLDDFK----LARQLH 222



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++ YS+ G       +  QM +SG  PD F   S++     L  F+   ++   + K  
Sbjct: 170 MISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSE 229

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           + AD+   N LI++Y +   +     +F  +  K    D+++W S +A +S+       L
Sbjct: 230 FGADLIAQNALISMYTKFSQMADAINVFSRIIIK----DLISWGSMIAGFSQLGYELEAL 285

Query: 200 EIFEEMIDAGCY-PDGGTAKVLISACS 225
             F EM+    Y P+        SACS
Sbjct: 286 CHFREMLSQSVYQPNEFVFGSAFSACS 312



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           + +S  +P+ FV  S  +   +L + +   ++     K    +D+     L ++Y + GF
Sbjct: 292 LSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGF 351

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E    +F  +     KPD+V W + +A ++     +     F +M   G  P+  T   
Sbjct: 352 LESARTVFYHIE----KPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLS 407

Query: 220 LISACS 225
           L+ ACS
Sbjct: 408 LLCACS 413



 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  VF  +++    P + +   ++  ++   N  +     +QM  +GL P+   + 
Sbjct: 351 FLESARTVFYHIEK----PDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVL 406

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+L             +V + + K  +  DI   N L+++Y +   +     +F+ +   
Sbjct: 407 SLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGN- 465

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISA 223
             K D+V+W + L A  ++      L + + M  +   PD  T   VL+S+
Sbjct: 466 --KADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSS 514



 Score = 38.9 bits (89), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P + S   L+  Y++ G   +   +   M   G+KP+      +L     +G  E+  +
Sbjct: 567 NPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLK 626

Query: 131 VLTAMEKGSYAADISTY-NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           +   M++    +    + + ++++  R G ++  E   + +P     PDVV W + LAA
Sbjct: 627 LYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMP---FVPDVVVWKTLLAA 682


>gi|414868297|tpg|DAA46854.1| TPA: hypothetical protein ZEAMMB73_384018 [Zea mays]
          Length = 504

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 86/178 (48%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           E M+R G+ P   ++  ++    K G + +   ++N+M   G+ P+T   N++++ Y  L
Sbjct: 271 ERMEREGLVPNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVTPNTITFNTLIHSYVTL 330

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  E   ++   M K   +AD+ TYN LI      G   K   L Q L A +L+P+  T+
Sbjct: 331 GDNEVAMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQLVQELCAAKLEPNASTF 390

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ +    +K+   R L++   M  AG  P+  T  +LIS  S     E    +++ M
Sbjct: 391 SALIIGQCKKQNPERALDLLNAMKKAGFQPNYYTYSILISTFSKNKDFEGAIDVLKDM 448



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A + F EM+R  ++P + +  +++ A    G V     ++++M   G        N+++ 
Sbjct: 195 AISFFREMRRCRVSPNVYTVNMVMRAKCALGRVVDAAQLLDEMPCWGFSRTAASFNTLIA 254

Query: 118 LYGR-LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            Y    G  E +  +   ME+     +  TYN +++   + G + +   +   +  K + 
Sbjct: 255 AYCHDSGGMETVLRLKERMEREGLVPNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVT 314

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ +T+ + + +Y         +++ EEM+ AG   D  T   LI    +E +  + + L
Sbjct: 315 PNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQL 374

Query: 237 VRTM 240
           V+ +
Sbjct: 375 VQEL 378



 Score = 40.4 bits (93), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/121 (19%), Positives = 58/121 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + EEM + G++  + ++  L+      G   K   ++ ++  + L+P+    ++++ 
Sbjct: 336 AMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQLVQELCAAKLEPNASTFSALII 395

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +    E+  ++L AM+K  +  +  TY+ILI+ + +    E    + + +  + + P
Sbjct: 396 GQCKKQNPERALDLLNAMKKAGFQPNYYTYSILISTFSKNKDFEGAIDVLKDMLMRCIAP 455

Query: 178 D 178
           D
Sbjct: 456 D 456


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 1/186 (0%)

Query: 57  DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           DA    +EM  + G  P   +   L+    K G+V     +++ M + G  PD +  NS+
Sbjct: 277 DALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV 336

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +LG+ ++  E L  M     + +  TYN LI+   +   +E+   L + L +K +
Sbjct: 337 ISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+ S +      + +R  +E+FEEM   GC PD  T  +LI +  S+ ++++   
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 236 LVRTMH 241
           +++ M 
Sbjct: 457 MLKQME 462



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 84/184 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEM+  G  P   ++ +L+ +    G + +   ++ QM  SG        N++++
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  +  + EE+   ME    + +  TYN LI+   +   +E    L   +  +  KP
Sbjct: 479 GFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKP 538

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+ S L  + R    ++  +I + M   GC PD  T   LIS      ++E  + L+
Sbjct: 539 DKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598

Query: 238 RTMH 241
           R++ 
Sbjct: 599 RSIQ 602



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 1/187 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVIN 113
           F D   + E+MK  G        ++L+ +Y++     +  GV++ M    GLKPDT   N
Sbjct: 99  FDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYN 158

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            MLNL       + +E     M       D+ST+N+LI    R   +     + + +P+ 
Sbjct: 159 RMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY 218

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD  T+T+ +  Y  +      L I E+M++ GC     +  V++     E ++E  
Sbjct: 219 GLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDA 278

Query: 234 TTLVRTM 240
              ++ M
Sbjct: 279 LNFIQEM 285



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM+  G++    ++  L+    K+  V     +++QM   G KPD F  NS+L
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLL 547

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R G  +K  +++ AM       DI TY  LI+   + G +E    L +S+  K + 
Sbjct: 548 THFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIA 607

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISA-CSSEDQI-EQV 233
                +   +    RK+     + +F EM++     PD  + +++    C+    I E V
Sbjct: 608 LTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAV 667

Query: 234 TTLVRTMHKDMKTALPIYFNLY 255
             LV  + K     +P + +LY
Sbjct: 668 DFLVELLEKGF---VPEFSSLY 686



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/137 (18%), Positives = 68/137 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + ++M+  G   ++ ++  L+  + K   + + E + ++M   G+  ++   N+
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  + E   +++  M       D  TYN L+  + RGG I+K   + Q++ +  
Sbjct: 511 LIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query: 175 LKPDVVTWTSRLAAYSR 191
            +PD+VT+ + ++   +
Sbjct: 571 CEPDIVTYGTLISGLCK 587


>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
 gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
          Length = 846

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 3/215 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y ++A+  F EM   GI P   ++  +++A  + GN+ +   +   M ++GL PD +  N
Sbjct: 545 YVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTSN 604

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++   R G+ E ++ +L  M       D  TYN +IN Y R   +         + A 
Sbjct: 605 ILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAA 664

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE--DQIE 231
             +PD+ T+   + +     +  +  ++ +E++  GC PD  T   L+    S+  D+  
Sbjct: 665 GCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVAMGCPPDSVTYNTLMDGICSDVLDRAM 724

Query: 232 QVT-TLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            +T  L++   +     L ++ + + ++G  +  L
Sbjct: 725 ILTGRLIKMAFQPNTITLNVFLSHFCKQGFGKRAL 759



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 98/236 (41%), Gaps = 23/236 (9%)

Query: 17  APHSWNFNYLPYPSHFMLINF-------LLLQHT-------PNLFVFIFSIYFSDAHAV- 61
           AP S  FNYL       L N        LLL+H           F       F + +AV 
Sbjct: 458 APSSSTFNYLI----MGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDASFREGNAVC 513

Query: 62  ----FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
               +++M +LG+ P   +    +    +   V +      +M   G+ P+ F  NS+++
Sbjct: 514 ALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIIS 573

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G   +  ++   M +     DI T NILI+   R G +E ++ L   + +  L P
Sbjct: 574 ALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGLTP 633

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           D VT+ + + AY R K     +    +M+ AGC PD  T  + + +  S   + Q 
Sbjct: 634 DTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPDIFTYNIWMHSLCSNHMLNQA 689



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 91/216 (42%), Gaps = 32/216 (14%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +FEEM R G  PT+ ++ +L+      G + +   + ++M + G++ +T   N ++
Sbjct: 272 DAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLI 331

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI----------------NIYGRGGFI 160
           + Y + G+ ++       M+      D  T+NI+                 +++G     
Sbjct: 332 DGYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAGAYKFGHAAQLVHDHDMFGSHMLA 391

Query: 161 EKMEGLFQSL---------------PAKRLKPDVVT-WTSRLAAYSRKKLYRRCLEIFEE 204
           + M+ L   L                 ++  P  VT + + +AAYS++ L+    E++  
Sbjct: 392 DGMDMLVCRLCWDCRLDDAWELLRGAIEQGAPLSVTGFNALIAAYSKEGLHEEAFELYRI 451

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           M   G  P   T   LI    ++ ++++   L+  M
Sbjct: 452 MNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHM 487



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/163 (19%), Positives = 69/163 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VFEEM   G  P++ +   ++  +   G V    G++  M + G+ P+    N ++  + 
Sbjct: 206 VFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHC 265

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G      ++   M +      + TYNIL+++    G + +   LF  +    ++ + +
Sbjct: 266 VFGWSRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTI 325

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           T+   +  Y++     +    + EM   G  PD  T  ++ + 
Sbjct: 326 TFNVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAG 368



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L  F+ +   ++A  V   ++R G TP++ +   LL    ++G V     V  +M   G 
Sbjct: 156 LHAFLAAGMAAEALDVLTRVRRSGKTPSLSALAALLRLLFRSGEVHAAWNVFEEMAARGP 215

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P     N+M+  +   G       +L  M +     ++ +YNILI  +   G+      
Sbjct: 216 RPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDAFK 275

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           LF+ +     +P VVT+   +     +        +F+EM   G   +  T  VLI   +
Sbjct: 276 LFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDGYA 335

Query: 226 SEDQIEQVTTLVRTM 240
              +++Q     R M
Sbjct: 336 KTGRMDQACAAYREM 350



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 73/176 (41%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           L L A+   G  A+   V+ ++ +SG  P    + ++L L  R G+      V   M   
Sbjct: 154 LALHAFLAAGMAAEALDVLTRVRRSGKTPSLSALAALLRLLFRSGEVHAAWNVFEEMAAR 213

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                ++T+N +I  +   G +    GL   +    + P+V ++   +  +      R  
Sbjct: 214 GPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDA 273

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
            ++FEEM  +GC P   T  +L+     E ++ +   L   M +    A  I FN+
Sbjct: 274 FKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNV 329



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 3/198 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-FVINSM 115
           +A  ++  M +LG+ P+  +   L+      G + + + ++  M   G    T F I   
Sbjct: 444 EAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTI--C 501

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   R G      +    M K     D   ++  IN   R  ++ +    F  + A+ +
Sbjct: 502 LDASFREGNAVCALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGI 561

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+  T+ S ++A  R       L++ + M   G  PD  T+ +LI     E ++E V  
Sbjct: 562 VPNNFTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDN 621

Query: 236 LVRTMHKDMKTALPIYFN 253
           L+  M  +  T   + +N
Sbjct: 622 LLLDMCSNGLTPDTVTYN 639



 Score = 40.8 bits (94), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 1/164 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AYSK G   +   +   M+K GL P +   N ++      G+ ++ + +L  M    
Sbjct: 432 LIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKG 491

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y    S + I ++   R G        +  +    L+PD + +++ +    R        
Sbjct: 492 YCLSTS-FTICLDASFREGNAVCALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAY 550

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + F EM   G  P+  T   +ISA      + +   L + M ++
Sbjct: 551 QAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMRQN 594


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EM + G+     ++ +L+    + G+    + +  +M   G+ P+    N++L+   
Sbjct: 213 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 272

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ EK   V   +++      I TYNI+I    + G +E    LF +L  K +KPDVV
Sbjct: 273 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVV 332

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + ++ + RK        +F+EM + G  P+ G    LI A   +   E    L++ M
Sbjct: 333 AYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 392

Query: 241 H 241
            
Sbjct: 393 R 393



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 91/190 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  +F+EM+  GI P + ++  L++     G  +    +++ M +  + PD F  +
Sbjct: 66  HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 125

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + + G+  + E++   M K S    I TY+ LIN +     +++ + +F+ + +K
Sbjct: 126 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 185

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDVVT+ + +  + + K     +E+F EM   G   +  T  +LI         +  
Sbjct: 186 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 245

Query: 234 TTLVRTMHKD 243
             + + M  D
Sbjct: 246 QEIFKEMVSD 255



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/197 (17%), Positives = 89/197 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M++  + P +  +  ++    K  ++     +  +M   G++P+    +S+++
Sbjct: 35  AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 94

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++     +L+ M +     D+ T++ LI+ + + G + + E L+  +  + + P
Sbjct: 95  CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 154

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            +VT++S +  +          ++FE M+   C+PD  T   LI       ++E+   + 
Sbjct: 155 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 214

Query: 238 RTMHKDMKTALPIYFNL 254
           R M +       + +N+
Sbjct: 215 REMSQRGLVGNTVTYNI 231



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/181 (17%), Positives = 80/181 (44%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A+ + M   G  P + ++ +++    K G+      ++N+M +  L+P   + N++++  
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +    +    +   ME      ++ TY+ LI+     G       L   +  +++ PDV
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+++ + A+ ++       ++++EM+     P   T   LI+     D++++   +   
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 181

Query: 240 M 240
           M
Sbjct: 182 M 182



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 66/148 (44%)

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            +I++M   G +PD      ++N   + G  +    +L  ME+G     +  YN +I+  
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            +   ++    LF+ +  K ++P+VVT++S ++       +     +  +MI+    PD 
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHK 242
            T   LI A   E ++ +   L   M K
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVK 149



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/203 (17%), Positives = 86/203 (42%), Gaps = 9/203 (4%)

Query: 39  LLQHTPNLFVFIFSIYFS---------DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           +++   N  VF FS             +A  +++EM +  I P++ ++  L+  +     
Sbjct: 112 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 171

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           + + + +   M      PD    N+++  + +  + E+  EV   M +     +  TYNI
Sbjct: 172 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 231

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           LI    + G  +  + +F+ + +  + P+++T+ + L    +     + + +FE +  + 
Sbjct: 232 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 291

Query: 210 CYPDGGTAKVLISACSSEDQIEQ 232
             P   T  ++I       ++E 
Sbjct: 292 MEPTIYTYNIMIEGMCKAGKVED 314


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 92/187 (49%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      ++E+   G   ++    +++  + K G + + + V + + K GL+P     N
Sbjct: 116 YFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFN 175

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + +AM       D+ TY++LIN   +   +++   LF  +  +
Sbjct: 176 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDR 235

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + +  +    +EI+++M+  G  PD  T   LI     +  ++QV
Sbjct: 236 GLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQV 295

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 296 RALIDEM 302



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 91/186 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +VF+ + + G+ P++ S   L+  Y + G++ +   + + MH SG++PD +  + ++N
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 214

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + ++  E+   M       +  T+  LI+++ + G ++    +++ + ++   P
Sbjct: 215 GLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSP 274

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++T+ + +    +K   ++   + +EM   G  PD  T   LI  C  E  +E      
Sbjct: 275 DLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFR 334

Query: 238 RTMHKD 243
           + M K+
Sbjct: 335 KRMIKE 340



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 83/188 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A+ +F EM   G+ P   +   L+  + K G V     +  QM   G  PD    N++
Sbjct: 223 DEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTL 282

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G  +++  ++  M       D  TY  LI+   + G +E      + +  + +
Sbjct: 283 IYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESI 342

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D V +T+ ++   ++       ++F EM+  G  PD GT  ++I+    +  +   + 
Sbjct: 343 RLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASR 402

Query: 236 LVRTMHKD 243
           L++ M +D
Sbjct: 403 LLKEMQRD 410



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M   G +P + ++  L+    K G++ +   +I++M  +GLKPD     ++++
Sbjct: 260 AMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLID 319

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  E   E    M K S   D   Y  L++   + G  +  E +F+ + +  LKP
Sbjct: 320 GCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKP 379

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           D  T+T  +  + +K   R    + +EM   G  P
Sbjct: 380 DNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414


>gi|255540253|ref|XP_002511191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550306|gb|EEF51793.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 538

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DAH VF+EM    I     +   ++  Y+  G   +   ++ +M  SG++ D F  + ++
Sbjct: 324 DAHCVFDEMPERNIV----AWNTIIAGYALHGYSEEALDMVYEMRNSGVRMDHFTFSIVV 379

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +  RL      ++   ++ +  + +DI   + L++ Y + G +E    +F  +P K   
Sbjct: 380 RICARLASLNYAKQAHASLLRHGFGSDIVANSALVDFYSKWGRVETARHVFDQMPCK--- 436

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +V++W + +A Y         +E+FE+M+     P+  T   ++SACS     E    +
Sbjct: 437 -NVISWNALIAGYGNHGKGDDAIELFEQMLQERIRPNHVTFLAVLSACSYSGLSEHGWEI 495

Query: 237 VRTMHKDMKTALPIY 251
            R+M +D K   P +
Sbjct: 496 FRSMDRDYKIYNPKF 510


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 93/197 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+ +EM   GI P   ++ +L+  + K  NV+    V  +M + GL+P+    N ++N
Sbjct: 212 ADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILIN 271

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ ++   +   M       ++ T+N+LIN + +   + +   LF  +  + + P
Sbjct: 272 GLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDP 331

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +T+T+ + AY +         ++  MID G +P+  T   LI+    +  ++   +L+
Sbjct: 332 NAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLM 391

Query: 238 RTMHKDMKTALPIYFNL 254
             M     +A  + +N+
Sbjct: 392 NEMVSKKLSADVVTYNI 408



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 89/199 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A A+ ++M    + P + +H +L+  + K   V +   + N M K G+ P+     ++
Sbjct: 280 DEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTL 339

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y + G+ E    +   M       ++STYN LI    R G ++    L   + +K+L
Sbjct: 340 IDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKL 399

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             DVVT+   + +  +K   R+ +++ +EM + G  P   T   L+     E  +     
Sbjct: 400 SADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALI 459

Query: 236 LVRTMHKDMKTALPIYFNL 254
           +   M +  K A  +  N+
Sbjct: 460 VRTRMERKGKQANVVTHNV 478



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 3/186 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK---CEGVINQMHKSGLKPDTFVINS 114
           A  V E+MK  G++P + ++  L+  Y K G + K    + ++ +M   G+ P+    N 
Sbjct: 174 AGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNI 233

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + +         V   M++     ++ TYNILIN     G +++   L   + +  
Sbjct: 234 LIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSD 293

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P+VVT    +  + + K     + +F +M   G  P+  T   LI A   + ++E   
Sbjct: 294 LEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAF 353

Query: 235 TLVRTM 240
            L   M
Sbjct: 354 ALYNMM 359



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 11/211 (5%)

Query: 30  SHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           +H +LIN      T N           +A  +F +M++ G+ P   ++  L+ AY K G 
Sbjct: 300 THNVLINGFCKNKTVN-----------EAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGR 348

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           +     + N M   G+ P+    N ++    R G  +    ++  M     +AD+ TYNI
Sbjct: 349 MEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNI 408

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           LI+   + G   K   L   +  K L P  VT+ + +  Y R+   R  L +   M   G
Sbjct: 409 LIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKG 468

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              +  T  VLI     + ++E    L+  M
Sbjct: 469 KQANVVTHNVLIKGFCLKGRLEDANGLLNEM 499



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  VF EM+R G+ P + ++ +L+      G V +   + +QM  S L+P+    N +
Sbjct: 245 SGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVL 304

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + +     +   +   MEK     +  TY  LI+ Y + G +E    L+  +  + +
Sbjct: 305 INGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGI 364

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+V T+   +A   RK   +    +  EM+      D  T  +LI +   + +  +   
Sbjct: 365 FPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVK 424

Query: 236 LVRTM 240
           L+  M
Sbjct: 425 LLDEM 429



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 16/156 (10%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++  EM    ++  + ++ +L+ +  K G   K   ++++M + GL P     N++++
Sbjct: 387 ARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMD 446

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G       V T ME+    A++ T+N+LI  +   G +E   GL   +  + L P
Sbjct: 447 GYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVP 506

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +  T+                  I EEM++ G  PD
Sbjct: 507 NRTTYEI----------------IKEEMMEKGFVPD 526



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 2/165 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA A++  M   GI P + ++  L+    + G+V     ++N+M    L  D    N ++
Sbjct: 351 DAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILI 410

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +   + G+  K  ++L  M EKG   + + TYN L++ Y R G +     +   +  K  
Sbjct: 411 DSLCKKGESRKAVKLLDEMFEKGLNPSHV-TYNTLMDGYCREGNLRAALIVRTRMERKGK 469

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           + +VVT    +  +  K        +  EM++ G  P+  T +++
Sbjct: 470 QANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514



 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 48/108 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   G+ P+  ++  L+  Y + GN+     V  +M + G + +    N ++ 
Sbjct: 422 AVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIK 481

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            +   G+ E    +L  M +     + +TY I+       GF+  +EG
Sbjct: 482 GFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVPDIEG 529


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 87/183 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VFE +++ G+   + +++ L+    K     + + V  Q+   GL  + F  N ++N + 
Sbjct: 381 VFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFC 440

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R    +   E    M+      ++ T+N LIN + + G I+K   L +SL    LKPD+ 
Sbjct: 441 RAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIF 500

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T++S +    + K     LE F EMI+ G  P+     +LI +  +   + +   L+R M
Sbjct: 501 TFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRM 560

Query: 241 HKD 243
            K+
Sbjct: 561 QKE 563



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 87/188 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A   F +M+  G+ P + +   L+  + K G + K   ++  + ++GLKPD F  +S+
Sbjct: 446 DNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSI 505

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   ++ + E+  E  T M +     +   YNILI      G + +   L + +  + +
Sbjct: 506 VDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGI 565

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD  ++ + +  + R     +  ++F+ M  +G  PD  T    I A S   ++E+   
Sbjct: 566 SPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKK 625

Query: 236 LVRTMHKD 243
           +  +M  +
Sbjct: 626 MFYSMEAN 633



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F EM   GI P    + +L+ +    G+VA+   ++ +M K G+ PDT+  N+++
Sbjct: 517 EALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALI 576

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++ R+ + EK +++  +M +     D  TY+  I      G +E+ + +F S+ A    
Sbjct: 577 QIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCS 636

Query: 177 PD 178
           PD
Sbjct: 637 PD 638



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 69/161 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  E++ LG   T      LL ++ + G       V  Q+   GL P T + N++++   
Sbjct: 131 LLRELRNLGFRVTEDLLCALLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALV 190

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +    +        M   +  AD  TYN LI+   + G +++   L + +  K   P+V 
Sbjct: 191 KSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVF 250

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           T+T  +  +           +FE M D+G YP+  T + L+
Sbjct: 251 TYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALV 291



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/108 (21%), Positives = 55/108 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +   M++ GI+P   S+  L+  + +   V K + + + M +SGL PD +  ++ +    
Sbjct: 556 LLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALS 615

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
             G+ E+ +++  +ME    + D    N++I I  +  ++E+ + + +
Sbjct: 616 ESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIE 663



 Score = 40.8 bits (94), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 8/230 (3%)

Query: 19  HSWNFNYLPYPSHFMLINFLLLQHT----PNLFVFIFSIYFSDAHAVFEEMKRLGITPTM 74
           H +    L  P   +L+N  L   T    P+  V IF    + +HA+        + PT+
Sbjct: 46  HLYISQLLSRPDWAVLLNHDLSSKTLLLNPSYAVSIFQNQQNPSHAIKFHSWLSHVNPTL 105

Query: 75  KSHMLLLTAYSKT----GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            +H  +  A   T    G       ++ ++   G +    ++ ++L  +GRLG       
Sbjct: 106 AAHNSVHRALRNTLHRKGPALLSVDLLRELRNLGFRVTEDLLCALLASWGRLGLANYSAH 165

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           V   +     +     YN LI+   +   I+     FQ + A     D  T+ + +    
Sbjct: 166 VFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVC 225

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +  +    L +  +M D G +P+  T  +LI       ++++   +  TM
Sbjct: 226 KVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETM 275


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 90/186 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F +M    I P + +  +L+  + K G V + + V+  M   G+KP     NS
Sbjct: 158 LKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNS 217

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  + Q  K + +   M +   + DI +Y+ILIN + +   +++   L + +  K+
Sbjct: 218 LMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQ 277

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+VVT++S +    +       L++ +EM D G  P+  T   ++ A     Q++   
Sbjct: 278 IIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAI 337

Query: 235 TLVRTM 240
            L+  M
Sbjct: 338 ALLTQM 343



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 88/185 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  + +EM    I P + ++  L+    K+G ++    ++++MH  G  P+    +S+
Sbjct: 264 DEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSI 323

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +  Q +    +LT M+      ++ TY ILI    + G +E    +F+ L  K  
Sbjct: 324 LDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGH 383

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             +V T+T  +  +  K L+   L +  +M D GC P+  T +++I +   +D+ E    
Sbjct: 384 NLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEK 443

Query: 236 LVRTM 240
           L+  M
Sbjct: 444 LLCEM 448



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 93/189 (49%), Gaps = 10/189 (5%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM---LNLY 119
           ++M+  GI P + +  +L+ ++ + G++     V+ ++ K G KP+T  +N++   L L 
Sbjct: 86  QKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLN 145

Query: 120 GRL-------GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           G++       G+ +   ++   M   +   D+ T+ IL++ + + G +++ + +   +  
Sbjct: 146 GKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMI 205

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + +KP VVT+ S +  Y   K   +   IF  M   G  PD  +  +LI+       +++
Sbjct: 206 QGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDE 265

Query: 233 VTTLVRTMH 241
              L++ MH
Sbjct: 266 AMELLKEMH 274



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 90/207 (43%), Gaps = 8/207 (3%)

Query: 34  LINFLLLQH-TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           L N ++L++  P+++ F   +          +A  V   M   GI P + ++  L+  Y 
Sbjct: 164 LFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYF 223

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
               V K + + N M + G+ PD    + ++N + ++   ++  E+L  M       ++ 
Sbjct: 224 LVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVV 283

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TY+ LI+   + G I     L   +  +   P++VT++S L A  +       + +  +M
Sbjct: 284 TYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQM 343

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQ 232
            + G  P+  T  +LI       ++E 
Sbjct: 344 KNQGIQPNMYTYTILIKGLCQSGKLED 370



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 67/155 (43%)

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
            G +     + N+M    + PD +    +++ + + G+ ++ + VL  M        + T
Sbjct: 155 VGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVT 214

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           YN L++ Y     + K + +F ++    + PD+ +++  +  + + K+    +E+ +EM 
Sbjct: 215 YNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMH 274

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
                P+  T   LI       +I     LV  MH
Sbjct: 275 HKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMH 309


>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 499

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 31/230 (13%)

Query: 10  DLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAV--FEEMKR 67
           DL  AQR      F+ +P P+ F            N  +  ++   S ++ V  F +M++
Sbjct: 65  DLPYAQRL-----FDQMPQPNTFFY----------NTIIRGYAKSSSPSYCVNLFNQMRQ 109

Query: 68  LGITPTMKSHMLLLTAYSKTGNV------AKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
             + P   +   L+ A S+   V       +C+ +   + K G     FV N+++NLY  
Sbjct: 110 NHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINLYAV 169

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G       V       +   D+ +++ L+  + RGG +E    +F  +P K    DVV+
Sbjct: 170 KGSPAAAWRVFNE----TVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEK----DVVS 221

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           WT+ ++ YS+    R  LE+F EM DAG  PD  T   +ISAC++   +E
Sbjct: 222 WTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNLGDVE 271



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 8/186 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M    +     S   +++ YSK     +   +  +M  +G++PD   I S+++
Sbjct: 207 ARQVFDDMPEKDVV----SWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVIS 262

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               LG  E    V + + +  +   +S  N LIN+Y + G +++   +F ++  K L  
Sbjct: 263 ACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSL-- 320

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             +TW S ++A +         E+F  M+++G  PDG T   L+ A + +  +++   L 
Sbjct: 321 --ITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRLF 378

Query: 238 RTMHKD 243
           + M +D
Sbjct: 379 QIMERD 384



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 9/206 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F EM   GI P   + + +++A +  G+V     V + ++++G      + N+++
Sbjct: 237 EALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNALI 296

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N+Y + G  ++   V   M++ S    + T+N +I+     G+ E    LF  +    + 
Sbjct: 297 NMYAKCGCVDRAWRVFNNMKRKS----LITWNSMISACANHGYAEDAFELFSCMLNSGIA 352

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEM-----IDAGCYPDGGTAKVLISACSSEDQIE 231
           PD +T+ + L AY+ K L      +F+ M     I+A     G    +L  A   E+  E
Sbjct: 353 PDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAYE 412

Query: 232 QVTTLVRTMHKDMKTALPIYFNLYGE 257
            + T+    +  +  AL     +YG+
Sbjct: 413 LIVTMPIPSNDIVWGALLAACRIYGD 438


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VFE M   G  P + S  +L+  Y K   + + + + ++M   GL PDT   N+++
Sbjct: 354 EARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLI 413

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  +  + EE+   M    Y  ++ TY+IL++   + G++++  GLF+++    LK
Sbjct: 414 SGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLK 473

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+VT+   +    +   ++   E+F E+   G  P+       I        +++    
Sbjct: 474 PDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKA 533

Query: 237 VRTMHKD 243
            R M KD
Sbjct: 534 FRQMEKD 540



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 89/188 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F +MK  GI PT+ ++  L+      G   +  G++N+M    + PD    + +
Sbjct: 248 NEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVL 307

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +++  + G+  +   +L  M +     D++TYN L+N Y     + +   +F+ + +K  
Sbjct: 308 IDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGR 367

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV +++  +  Y + K      ++F+EM   G  PD  +   LIS      +  +   
Sbjct: 368 MPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEE 427

Query: 236 LVRTMHKD 243
           L + MH +
Sbjct: 428 LFKDMHSN 435



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 90/186 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +  EMK   I P + +  +L+    K G V++   ++  M + G++PD    N+
Sbjct: 282 WKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNT 341

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y    +  +  +V   M       D+ +++IL+N Y +   I++ + LF  +  + 
Sbjct: 342 LMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRG 401

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD V++ + ++   + +      E+F++M   G  P+  T  +L+   S +  ++Q  
Sbjct: 402 LIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAM 461

Query: 235 TLVRTM 240
            L R M
Sbjct: 462 GLFRAM 467



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 9/177 (5%)

Query: 48  VFIFSIY---------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           VF FSI            +A  +F+EM   G+ P   S+  L++   +     + E +  
Sbjct: 371 VFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFK 430

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            MH +G  P+    + +L+   + G  ++   +  AME      D+ TYNI+I+   + G
Sbjct: 431 DMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYG 490

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             +    LF  L  K L+P+    T  +    +  L     + F +M    C P  G
Sbjct: 491 KFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQG 547



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 85/180 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + E MK +G  P +  +  ++    K   V +   +  +M  +G+ P      S+++   
Sbjct: 218 LLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLR 277

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            LG++++   +L  M+ G+   D+  +++LI+I  + G + +   + +++    ++PDV 
Sbjct: 278 NLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVA 337

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + +  Y  +       ++FE MI  G  PD  +  +L++      +I++   L   M
Sbjct: 338 TYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEM 397



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/181 (18%), Positives = 79/181 (43%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V  ++ +LG+ P + +   L+  +   G + +   + + M   G KP+    + ++   
Sbjct: 147 SVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGL 206

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            R+G+  ++ ++L  M+      D+  YN +++   +   + +   +F  +    + P V
Sbjct: 207 CRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTV 266

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+TS +        ++    +  EM      PD     VLI     E ++ +   +++T
Sbjct: 267 VTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKT 326

Query: 240 M 240
           M
Sbjct: 327 M 327



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 75/159 (47%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           ++M+  GI+  + S  +L+  + +  +V     V+ ++ K GL+P+    ++++N +   
Sbjct: 115 KQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIE 174

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G+  +  E+   M    Y  ++ +Y+I+I    R G   ++  L + +     +PDVV +
Sbjct: 175 GKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIY 234

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            + +    + +L    + IF +M   G  P   T   LI
Sbjct: 235 NTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLI 273



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 68/159 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA + F  M      P++     L +A  +  +      +  QM  +G+  D   +  
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + RL   +    VL  + K     ++ T++ LIN +   G I +   LF  + A+ 
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            KP+V +++  +    R       +++ E M   GC PD
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPD 230


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  F     +S A A FE MK   + P   +  +++    K G   +   + N
Sbjct: 258 LITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFN 317

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   ++   PD     S++  Y   GQ E  + V   M       +I +YN L+  Y  
Sbjct: 318 SMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYAS 377

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +    F+ L    L+PD+V++TS L AY R     +  E+F EM    C P+  +
Sbjct: 378 HGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVS 437

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   +++  +L+  M +D
Sbjct: 438 YNALIDAYGSAGMLKEAISLLHEMEQD 464



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +  AVF+ M   G+ P + S+  LL AY+  G   +       + ++GL+PD     S+L
Sbjct: 348 NCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLL 407

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N YGR  Q EK  EV   M K +   +  +YN LI+ YG  G +++   L   +    ++
Sbjct: 408 NAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQ 467

Query: 177 PDVVTWTSRLAAYSRKK 193
           PDV++ ++ L A  R K
Sbjct: 468 PDVISISTLLTACGRCK 484



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 2/185 (1%)

Query: 55  FSDAHAVFEEMK--RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           + +A  +F  M+  R    P + ++  ++ +YS  G    C+ V + M   G++P+    
Sbjct: 309 YGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSY 368

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++L  Y   G   +  E    +++     DI +Y  L+N YGR    EK   +F  +  
Sbjct: 369 NALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRK 428

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
              KP+ V++ + + AY    + +  + +  EM   G  PD  +   L++AC    Q+ +
Sbjct: 429 NACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTK 488

Query: 233 VTTLV 237
           +  ++
Sbjct: 489 IDIIL 493



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 36/236 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A ++  EM++ GI P + S   LLTA  +   + K + ++      G++ +T   NS
Sbjct: 451 LKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNS 510

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI----------------------N 152
            +  Y  LG ++K   + T+M  G+   D  TYNILI                      N
Sbjct: 511 GIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLN 570

Query: 153 I-------------YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           I             Y + G + +    F S+      PDV+T+T+ + AYS    +RR  
Sbjct: 571 IHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAW 630

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNL 254
           ++F+EM + G  PD      L+ A +   Q E+V  L+  M  K ++     YF +
Sbjct: 631 DLFKEMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQKAYFEI 686



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 35/221 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM++    P   S+  L+ AY   G + +   ++++M + G++PD   I+++L 
Sbjct: 419 AREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLT 478

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             GR  Q  K++ +L A +      +   YN  I  Y   G  +K   L+ S+ A  +KP
Sbjct: 479 ACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKP 538

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID------------------------------ 207
           D VT+   ++   +   Y   L+ FE+M+D                              
Sbjct: 539 DAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTF 598

Query: 208 -----AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
                 GC+PD  T   LI A S +    +   L + M  +
Sbjct: 599 NSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENN 639



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 84/168 (50%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A   F+ +K+ G+ P + S+  LL AY ++    K   V N+M K+  KP+    N++
Sbjct: 382 TEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNAL 441

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ YG  G  ++   +L  ME+     D+ + + L+   GR   + K++ +  +  ++ +
Sbjct: 442 IDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGI 501

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + + V + S + +Y     Y++ L ++  M      PD  T  +LIS 
Sbjct: 502 QLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISG 549



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 2/158 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+     P   ++  L+ A+++ G       +++ M ++ + P     N+++N
Sbjct: 172 ARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVIN 231

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G  G ++K  E+   M +     D+ T+NI+++ +  G    K    F+ + + ++ P
Sbjct: 232 ACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAP 291

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPD 213
           D  T    +    +  LY   +E+F  M +    C+PD
Sbjct: 292 DTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPD 329



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 70/143 (48%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   V +  G+  +M +   KP+T   NS+++ + R GQ+     ++  M++ 
Sbjct: 158 MMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRA 217

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     +TYN +IN  G  G  +K   L + +    + PD++T    L+A+     Y + 
Sbjct: 218 AIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKA 277

Query: 199 LEIFEEMIDAGCYPDGGTAKVLI 221
           +  FE M  +   PD  T  ++I
Sbjct: 278 IAYFEIMKSSKVAPDTCTMNIVI 300



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 35/193 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A + F  MK  G  P + ++  L+ AYS  G+  +   +  +M  +G +PD  V +S
Sbjct: 591 LTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSS 650

Query: 115 MLNLYGRLGQFEKMEEVLTAMEK---------------------------------GSYA 141
           ++    + GQ E++ +++  M++                                  S  
Sbjct: 651 LMEALNKGGQPERVLQLIEFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLDSSL 710

Query: 142 ADIS--TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           + IS  T N ++N  G+ G  E M  LF  +        + T+T  L        +R+ +
Sbjct: 711 SSISFGTLNHILNFLGKCGRTESMMKLFYKMVTSCSTVGLSTYTILLRNLLIVGKWRKYV 770

Query: 200 EIFEEMIDAGCYP 212
           E+ + M DAG  P
Sbjct: 771 EVLQWMEDAGVCP 783



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 51/105 (48%)

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +Y A    Y ++I ++ R   +++  GLF  +   R KP+  T+ S + A++R   +   
Sbjct: 148 NYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWA 207

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + I ++M  A   P   T   +I+AC +    ++   L + M ++
Sbjct: 208 INIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTEN 252



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 14/200 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  ++  M+   + P   ++ +L++   K G   +       M    +     V +S
Sbjct: 521 YKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSS 580

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + G+  +      +M++     D+ TY  LI  Y   G   +   LF+ +    
Sbjct: 581 VICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNG 640

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PD +  +S + A ++     R L++ E M       +      +IS+C          
Sbjct: 641 TQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQKAYFEIISSC---------- 690

Query: 235 TLVRTMHKDMKTALPIYFNL 254
               TM +D KTA  I  +L
Sbjct: 691 ----TMLRDWKTASQIIEHL 706



 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/109 (21%), Positives = 50/109 (45%)

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+ L+ R  + ++   +   M++     +  TYN LI+ + R G       +   +    
Sbjct: 159 MIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAA 218

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + P   T+ + + A      +++ LE+ ++M + G  PD  T  +++SA
Sbjct: 219 IPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSA 267


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 3/187 (1%)

Query: 57  DAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +A  VF++M  LG  +P ++S+  L+ A+    N+ +   V N+M + G+KPD  V N+M
Sbjct: 313 EARQVFDKM--LGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTM 370

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    R  +  +  ++   M+      ++ TY +LI  + + G ++     F+ +   R 
Sbjct: 371 IEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARC 430

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDV T+T  L  Y   K   R   + EEM   GC PD  T   LI   ++    +    
Sbjct: 431 QPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAAR 490

Query: 236 LVRTMHK 242
           + + M K
Sbjct: 491 IYKKMIK 497



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 2/192 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FE MK  G  P + ++ +L+  + K G +        +M ++  +PD      +L
Sbjct: 382 EAVKMFELMKAKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLL 441

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG   + +++  VL  M +     D  TYN LI +       +    +++ +  K L 
Sbjct: 442 VGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLD 501

Query: 177 PDVVTWTSRLAAY-SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           P + T+   + +Y    + Y     ++EEM   G  PD  +  V IS      + E+   
Sbjct: 502 PTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYK 561

Query: 236 LVRTM-HKDMKT 246
            +  M +K MK 
Sbjct: 562 YIEEMINKGMKA 573



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 7/151 (4%)

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK-GSYAADISTYNILINIYGRGGFIEK 162
           G    T     ML + G+  QFE M  +L  M K G+ + D   + + I  +   G I+ 
Sbjct: 221 GFTHTTITYCKMLLILGKTRQFESMVALLQEMGKAGTLSMD--AFKVAIKSFAAAGEIKN 278

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLI 221
             G+F+ +        V ++   L A + + L R   ++F++M+  G Y PD  +   L+
Sbjct: 279 AVGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDKML--GQYSPDLRSYTALM 336

Query: 222 SA-CSSEDQIEQVTTLVRTMHKDMKTALPIY 251
            A C++ + +E        + K MK  + ++
Sbjct: 337 LAWCNARNLVEAGRVWNEMLEKGMKPDVVVH 367


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 42/234 (17%)

Query: 30  SHFMLINFLLLQHT----PNLFV-------FIFSIYFSDAHAVFEEMKRLGITPTMKSHM 78
           S F  +++ +L +T    PN+FV       F+ S     A  ++ +M R  ++PT  +  
Sbjct: 25  STFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFP 84

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EK 137
            L+ A      +   E V   + ++G     FV  S+++ Y  +G+ E+   V   M E+
Sbjct: 85  SLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPER 144

Query: 138 GSYA--------------------------ADISTYNILINIYGRGGFIEKMEGLFQSLP 171
             +A                           +++T+N LI+ Y R   ++  E LF  +P
Sbjct: 145 DVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMP 204

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           A+    D+++WT+ +  YS+ K +R  L +F EM   G  PD  T   +ISAC+
Sbjct: 205 AR----DIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACA 254



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++  YS+     +  GV N+M K G+ PD   + ++++    LG  +  +E+   + +  
Sbjct: 214 MINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHG 273

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +  D+   + LI++Y + G +++   +F  L  K L      W S +   +        L
Sbjct: 274 FNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNL----FCWNSVIEGLAVHGYAEEAL 329

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +F++M      P+G T   ++SAC+    IE+      +M +D
Sbjct: 330 AMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRD 373



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 86/187 (45%), Gaps = 5/187 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  VF EM + GI+P   +   +++A +  G +   + +   + + G   D ++ ++
Sbjct: 224 FREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSA 283

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y + G  ++   +   + +     ++  +N +I      G+ E+   +F  +  ++
Sbjct: 284 LIDMYAKCGSLDRSLLMFFKLRE----KNLFCWNSVIEGLAVHGYAEEALAMFDKMEREK 339

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA-KVLISACSSEDQIEQV 233
           +KP+ VT+ S L+A +   L     + F  M      P G      ++   S    +E+ 
Sbjct: 340 IKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEA 399

Query: 234 TTLVRTM 240
             L+RTM
Sbjct: 400 LQLIRTM 406


>gi|387191507|gb|AFJ68617.1| pentatricopeptide repeat-containing protein, partial
           [Nannochloropsis gaditana CCMP526]
          Length = 646

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 36/218 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----------- 103
           +  A  V +EM+R+G+ P + +H  ++ A ++ G   +   ++ QM  S           
Sbjct: 422 WRQALQVLQEMRRVGLVPNVVNHNTVMDAIAEAGEAGEALALLKQMKVSRVPADKRTYTA 481

Query: 104 ------------------------GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKG 138
                                   G+ PD     +++ LYG+ G  E+MEE++  M  K 
Sbjct: 482 AIKAMIKSADVLQGRELFEEMCAAGITPDAVTYTTLMELYGQAGNKEQMEELVQQMSRKR 541

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            +  D+  +  +I  YGR G   +   L  ++ A+ +KP VV++ + +AA +    +   
Sbjct: 542 GFPRDVRAFTAVIRAYGRAGLWREALELLGTMKARNVKPTVVSYGTAMAALAASGRHVEA 601

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            E+ E M   G  P+    +    AC +  ++++V  L
Sbjct: 602 FELLEAMKREGVEPNQVVLEWATEACRTAGRLDKVVQL 639



 Score = 43.9 bits (102), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 21/211 (9%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +FE MK +  T   +          K G   K EG   +   S L       N++L    
Sbjct: 372 LFERMKAMQATQEKR----------KGGKERKGEGESEEDRLSVL----IAYNAVLEALK 417

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
              ++ +  +VL  M +     ++  +N +++     G   +   L + +   R+  D  
Sbjct: 418 TDKEWRQALQVLQEMRRVGLVPNVVNHNTVMDAIAEAGEAGEALALLKQMKVSRVPADKR 477

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T+ + A  +     +  E+FEEM  AG  PD  T   L+         EQ+  LV+ M
Sbjct: 478 TYTAAIKAMIKSADVLQGRELFEEMCAAGITPDAVTYTTLMELYGQAGNKEQMEELVQQM 537

Query: 241 H------KDMKTALPIYFNLYGEKGVARSNL 265
                  +D++ A       YG  G+ R  L
Sbjct: 538 SRKRGFPRDVR-AFTAVIRAYGRAGLWREAL 567


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 82/158 (51%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA    +EM   GI P + ++  ++  Y ++GNV+K +  + +M  + + PD    N++
Sbjct: 173 EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 232

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y +  +     ++L  MEK     D+ TYN+LIN +   G +++   +F+ + AK +
Sbjct: 233 IHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 292

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +PD  T+ S +  +      +   ++ +EM+  G  PD
Sbjct: 293 EPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  V +EM   G  P + ++  LL    K   +   EG++N+M + G+ PD     ++
Sbjct: 33  SDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTL 92

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y   G+ +K  ++   M       DI TYN LI+   R G ++K   L+  + ++ +
Sbjct: 93  IHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI 152

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSS 226
            P+ VT++  + ++  K          +EMI+ G  P+  T   +I   C S
Sbjct: 153 FPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRS 204



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 86/198 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  EM+  G+ P + +   L+  Y   G + K   + + M    L+PD    N+++
Sbjct: 69  DAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLI 128

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G  +K  ++   M       +  TY+ILI+ +   G +E   G    +  K + 
Sbjct: 129 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 188

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+++T+ S +  Y R     +  +  ++M+     PD  T   LI     ED++     L
Sbjct: 189 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 248

Query: 237 VRTMHKDMKTALPIYFNL 254
           +  M K+      + +N+
Sbjct: 249 LNMMEKEKVQPDVVTYNM 266



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 86/181 (47%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A   EM+  G+ P    + +++  + + G ++    V ++M   G  PD    N++LN  
Sbjct: 2   AYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 61

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +  +    E +L  M +     D+ T+  LI+ Y   G ++K   LF ++  +RL+PD+
Sbjct: 62  CKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDI 121

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+ + +    R+    +  +++++M     +P+  T  +LI +   + Q+E     +  
Sbjct: 122 VTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDE 181

Query: 240 M 240
           M
Sbjct: 182 M 182



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ ++++M    I P   ++ +L+ ++ + G V    G +++M   G+ P+    NS++ 
Sbjct: 140 ANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 199

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G   K ++ L  M     + D+ TYN LI+ Y +   +     L   +  ++++P
Sbjct: 200 GYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQP 259

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           DVVT+   +  +S     +    IFE+M   G  PD  T   +I+ 
Sbjct: 260 DVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMING 305



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 84/204 (41%), Gaps = 7/204 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L  F   I+          A  +F+ M    + P + ++  L+    + G++ K   +
Sbjct: 84  PDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDL 143

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            + MH   + P+    + +++ +   GQ E     L  M       +I TYN +I  Y R
Sbjct: 144 WDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCR 203

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G + K +   Q +   ++ PD++T+ + +  Y ++       ++   M      PD  T
Sbjct: 204 SGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVT 263

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
             +LI+  S    +++   +   M
Sbjct: 264 YNMLINGFSVHGNVQEAGWIFEKM 287


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF+ M R   TP ++S+  L+ A+    N+ +   V N M + G+KPD  V N+M+
Sbjct: 325 EAARVFDRM-RDQYTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMI 383

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R  +  +  ++   M+      ++ TY +LI  + + G ++     F+ +     +
Sbjct: 384 DGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQ 443

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V T+T  L  Y   K   R   + EEM   GC PDG T   LI   ++ +  +    +
Sbjct: 444 PEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRI 503

Query: 237 VRTM 240
            + M
Sbjct: 504 YKKM 507



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 1/167 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FE MK  G  P + ++ +L+  + K G +        +M  +G +P+      +L
Sbjct: 394 EAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLL 453

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG   + +++  +L  M +     D  TYN LI +       +    +++ +  K L+
Sbjct: 454 VGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLE 513

Query: 177 PDVVTWTSRLAAY-SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           P + T+   + +Y    + Y     ++EEM   G  PD  +  V I+
Sbjct: 514 PTIHTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFIN 560



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 1/149 (0%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           FEEM+  G  P + ++  LL  Y     + +   ++ +M + G  PD    N+++ L   
Sbjct: 434 FEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTN 493

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME-GLFQSLPAKRLKPDVV 180
               +    +   M        I TYN+++  Y  GG    M   +++ +  K + PDV 
Sbjct: 494 RNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVN 553

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           ++T  +  + R        +  EEMI  G
Sbjct: 554 SYTVFINGHIRHGRPAEACKFLEEMIQKG 582



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML++ G+  QFE M  ++  M K   A  +  + I I  +   G I+   G+F+ +    
Sbjct: 244 MLHILGKARQFETMVALVQEMGKAG-ALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRVHG 302

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
               V ++   L A +++ L +    +F+ M D           ++++ C++ + +E   
Sbjct: 303 FDDGVESFNCLLVALAQEGLGKEAARVFDRMRDQYTPDLRSYTALMLAWCNARNLVEAGR 362

Query: 235 TLVRTMHKDMKTALPIY 251
                + K MK  + ++
Sbjct: 363 VWNDMLEKGMKPDVVVH 379


>gi|297738294|emb|CBI27495.3| unnamed protein product [Vitis vinifera]
          Length = 552

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 98/189 (51%), Gaps = 4/189 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V++E+   G  P   ++  ++  Y +    +K E V ++M K G        +SM+ 
Sbjct: 321 AAKVYDELILQGCEPGQVTYASIINVYCRMELYSKAEMVFSEMEKKGFNKCVVAYSSMVV 380

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YG+ G+  +   ++  M++     ++  YN L++++GR   + ++E L++ +  K++ P
Sbjct: 381 MYGKTGRLREAMRLVAKMKERGCEPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVP 440

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++TS ++AYS+   +  C+  + E    G   D   A +++   S   +++++  L+
Sbjct: 441 DRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRVIAGIMVGIFSKSGRVDELVKLL 500

Query: 238 RTMHKDMKT 246
               +DMKT
Sbjct: 501 ----QDMKT 505



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 60/107 (56%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A  VF EM++ G    + ++  ++  Y KTG + +   ++ +M + G +P+ +V NS
Sbjct: 353 YSKAEMVFSEMEKKGFNKCVVAYSSMVVMYGKTGRLREAMRLVAKMKERGCEPNVWVYNS 412

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           +++++GR+    ++E++   M++     D  +Y  +I+ Y + G  E
Sbjct: 413 LMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFE 459



 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/207 (18%), Positives = 83/207 (40%), Gaps = 38/207 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK---------------------- 92
           FS   AV++ MK  G+ P  +S+  ++ AY K  +  K                      
Sbjct: 140 FSSTIAVYDRMKSAGVVPNSESYYRIMEAYIKIRDYEKVVTLFQEFESRKIDSSPFSTQI 199

Query: 93  ----CEGV------------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
               CE +               M K G+  D+ V +S++  +  + + +  EE+    E
Sbjct: 200 YRILCESLGKMGRAFEALEFFRDMTKKGILEDSAVYSSLICSFASIREVKVAEELFREAE 259

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           +     D   +  L+ +Y   G +E+   + +++    ++     + + +  +++K+  R
Sbjct: 260 EKKILRDPEVFLKLVLMYVEEGLMERTLEIVKAMKNVEIRVSDCIFCAIVNGFAKKRGLR 319

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISA 223
              ++++E+I  GC P   T   +I+ 
Sbjct: 320 AAAKVYDELILQGCEPGQVTYASIINV 346



 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 47/102 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
              +++EMKR  + P   S+  +++AYSK G+   C    ++   +G   D  +   M+ 
Sbjct: 426 VEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRVIAGIMVG 485

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           ++ + G+ +++ ++L  M+      D   Y   +N     G 
Sbjct: 486 IFSKSGRVDELVKLLQDMKTEGTGLDERLYRSALNALRDAGL 527



 Score = 40.8 bits (94), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 64/153 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F +M + GI      +  L+ +++    V   E +  +  +  +  D  V   ++
Sbjct: 215 EALEFFRDMTKKGILEDSAVYSSLICSFASIREVKVAEELFREAEEKKILRDPEVFLKLV 274

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +Y   G  E+  E++ AM+          +  ++N + +   +     ++  L  +  +
Sbjct: 275 LMYVEEGLMERTLEIVKAMKNVEIRVSDCIFCAIVNGFAKKRGLRAAAKVYDELILQGCE 334

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           P  VT+ S +  Y R +LY +   +F EM   G
Sbjct: 335 PGQVTYASIINVYCRMELYSKAEMVFSEMEKKG 367


>gi|255641788|gb|ACU21163.1| unknown [Glycine max]
          Length = 481

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 6/173 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  DAH +F++M +   +    +   L++ Y++ G+  +   +  QM + G++ D F   
Sbjct: 140 YLDDAHDLFDQMAKRDTSAFPWNS--LISGYAQVGHYDEAIALYFQMVEEGVEADLFTFP 197

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L +   +G  +  EEV     +  +AAD    N L+++Y + G I K   +F  +P +
Sbjct: 198 RVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHR 257

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
               D V+W S L AY    L  + + IF +M+  GC PD  +   +++  SS
Sbjct: 258 ----DPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSS 306



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 17/189 (8%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +LTAY   G   +   +  QM   G +PD+  I+++L     LG   ++   + +     
Sbjct: 265 MLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSLGLGVQIHGWVISQ---G 321

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +  ++S  N LI +Y   G +EK   +F  +P +    DVV+W S ++A+ ++   R  L
Sbjct: 322 HEWNLSIANSLIMMYSNHGRLEKARWVFNLMPER----DVVSWNSIISAHCKR---REAL 374

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI------YFN 253
             FE+M  AG  PD  T   ++SAC+    ++    L   M    K   PI        N
Sbjct: 375 AFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGERLFALMCGKYKIK-PIMEHYGCMVN 433

Query: 254 LYGEKGVAR 262
           LYG  G+ +
Sbjct: 434 LYGRAGLIK 442


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 83/193 (43%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S    D   +F EM   G+     ++  L+      G+    + V  QM   G+ PD
Sbjct: 334 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 393

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               + +L+     G+ EK  EV   M+K     DI  Y  +I    + G ++    LF 
Sbjct: 394 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 453

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
           SL  K +KP+VVT+ + ++    K+L +    + ++M + G  PD GT   LI A   + 
Sbjct: 454 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 513

Query: 229 QIEQVTTLVRTMH 241
                  L+R M 
Sbjct: 514 DKAASAELIREMR 526



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 90/190 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  +F+EM+  GI P + ++  L++     G  +    +++ M +  + P+    N
Sbjct: 199 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 258

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + + G+F + E++   M K S   DI TYN LIN +     ++K + +F+ + +K
Sbjct: 259 ALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK 318

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PD+ T+ + +  + + K      E+F EM   G   D  T   LI     +   +  
Sbjct: 319 DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 378

Query: 234 TTLVRTMHKD 243
             + + M  D
Sbjct: 379 QKVFKQMVSD 388



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 93/220 (42%), Gaps = 35/220 (15%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A A+ + M + G  P + ++ +++    K G++     ++N+M  + ++ D  + N++
Sbjct: 131 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 190

Query: 116 -------------LNLYGRL----------------------GQFEKMEEVLTAMEKGSY 140
                        LNL+  +                      G++    ++L+ M +   
Sbjct: 191 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 250

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             ++ T+N LI+ + + G   + E L   +  + + PD+ T+ S +  +       +  +
Sbjct: 251 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 310

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +FE M+   C+PD  T   LI       ++E  T L R M
Sbjct: 311 MFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREM 350



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 84/190 (44%), Gaps = 4/190 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA A+ ++M  +G  P   +   L+         ++   ++++M + G +P+      
Sbjct: 95  ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 154

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G  +    +L  ME     AD+  +N +I+   +   ++    LF+ +  K 
Sbjct: 155 VVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 214

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VVT++S ++       +    ++  +MI+    P+  T   LI A   E +  +  
Sbjct: 215 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 274

Query: 235 TLVRTMHKDM 244
            L    H DM
Sbjct: 275 KL----HDDM 280



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 92/214 (42%), Gaps = 6/214 (2%)

Query: 27  PYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86
           P PS F     L        F  + S+      A+  +M +LG  P++ +   LL  Y  
Sbjct: 38  PLPSIFEFNKLLSAIAKMKKFDLVISL------ALLGKMMKLGYEPSIVTLSSLLNGYCH 91

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
              ++    +++QM + G +PDT    ++++      +  +   ++  M +     ++ T
Sbjct: 92  GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 151

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           Y +++N   + G I+    L   + A +++ DVV + + + +  + +     L +F+EM 
Sbjct: 152 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 211

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             G  P+  T   LIS   S  +    + L+  M
Sbjct: 212 TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 245



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 35/186 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +  +M    I P + +   L+ A+ K G   + E + + M K  + PD F  NS
Sbjct: 235 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNS 294

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK------------ 162
           ++N +    + +K +++   M       D+ TYN LI  + +   +E             
Sbjct: 295 LINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG 354

Query: 163 -----------MEGLF------------QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                      ++GLF            + + +  + PD++T++  L          + L
Sbjct: 355 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 414

Query: 200 EIFEEM 205
           E+F+ M
Sbjct: 415 EVFDYM 420



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 2/184 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P  +  + +  ++ K   +    G+   M KS   P  F  N +L+   ++ +F+ +  +
Sbjct: 5   PRRRDCLFVGISWGKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISL 64

Query: 132 --LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
             L  M K  Y   I T + L+N Y  G  I     L   +     +PD +T+T+ +   
Sbjct: 65  ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGL 124

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
                    + + + M+  GC P+  T  V+++       I+    L+  M      A  
Sbjct: 125 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADV 184

Query: 250 IYFN 253
           + FN
Sbjct: 185 VIFN 188


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 88/187 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      +EE+   G   ++    +L+  + K G++   + V N + K GL+P     N
Sbjct: 116 YFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFN 175

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + TAM       D+ TY++LIN   +   ++    LF  +  K
Sbjct: 176 TLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 235

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + +       +EI+++M+     PD  T   LI     +  ++Q 
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQA 295

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 296 RDLIDEM 302



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           YP+     N L+ +   +  + +       A +VF  + + G+ P++ S   L+  Y + 
Sbjct: 132 YPASLYFFNILMHKFCKDGDIRV-------AQSVFNAITKWGLRPSVVSFNTLMNGYIRL 184

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G++ +   +   MH SG++PD +  + ++N   +  + +   E+   M       +  T+
Sbjct: 185 GDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTF 244

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
             LI+ + + G ++    +++ + ++ L PD++T+ + +    RK   ++  ++ +EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSM 304

Query: 208 AGCYPDGGTAKVLISACSSEDQIE 231
            G  PD  T   LI     E  +E
Sbjct: 305 KGLKPDKITYTTLIDGXCKEGDLE 328



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 83/188 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA+ +F+EM   G+ P   +   L+  + K G V     +  QM    L PD    N++
Sbjct: 223 DDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    R G  ++  +++  M       D  TY  LI+   + G +E      + +  + +
Sbjct: 283 IYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENI 342

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D V +T+ ++   ++  Y    ++  EM+  G  PD  T  ++I+    +  +   + 
Sbjct: 343 QLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSK 402

Query: 236 LVRTMHKD 243
           L++ M +D
Sbjct: 403 LLKEMQRD 410



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 74/172 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P + ++ +L+    K   +     + ++M   GL P+     ++++ + + G+ +  
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            E+   M   S + D+ TYN LI    R G +++   L   +  K LKPD +T+T+ +  
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             ++       E  + MI      D      LIS    E +      ++R M
Sbjct: 321 XCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREM 372


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 2/185 (1%)

Query: 55  FSDAHAVFEEMK--RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           + +A  +F  M+  R    P + ++  ++ +YS  G    C+ V + M   G++P+    
Sbjct: 309 YGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSY 368

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++L  Y   G   +  E    +++  +  DI +Y  L+N YGR    EK   +F  +  
Sbjct: 369 NALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRK 428

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
              KP+ V++ + + AY    + +  + +  EM   G  PD  +   L++AC    Q  +
Sbjct: 429 NACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTK 488

Query: 233 VTTLV 237
           +  ++
Sbjct: 489 IGIIL 493



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 2/207 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ H   L  F     +S A A FE MK   + P   +  +++    K     +   + N
Sbjct: 258 LITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFN 317

Query: 99  QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            M   ++   PD     S++  Y   GQ E  + V   M       +I +YN L+  Y  
Sbjct: 318 SMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYAS 377

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   +    F+ L     KPD+V++TS L AY R  L  +  E+F EM    C P+  +
Sbjct: 378 HGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVS 437

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI A  S   +++  +L+  M +D
Sbjct: 438 YNALIDAYGSAGMLKEAISLLHEMEQD 464



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A   F+ +K+ G  P + S+  LL AY ++    K   V N+M K+  KP+    N++
Sbjct: 382 TEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNAL 441

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ YG  G  ++   +L  ME+     D+ + + L+   GR     K+  +  +  ++ +
Sbjct: 442 IDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGI 501

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           + + V + S + +Y     Y++ LE++  M      PD  T  +LIS
Sbjct: 502 QLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNILIS 548



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 70/143 (48%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++  +++   V +  G+  +M +   KPDT   NS+++ + R GQ+     ++  M++ 
Sbjct: 158 MMIRLHARHNQVDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRA 217

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +     +TYN +IN  G  G  +K   L + +    + PD++T    L+A+     Y + 
Sbjct: 218 AIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKA 277

Query: 199 LEIFEEMIDAGCYPDGGTAKVLI 221
           +  FE M  +   PD  T  ++I
Sbjct: 278 IAYFEIMKSSKVAPDTCTMNIVI 300



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 2/158 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM+     P   ++  L+ A+++ G       +++ M ++ + P     N+++N
Sbjct: 172 ARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVIN 231

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G  G ++K  E+   M +     D+ T+NI+++ +  G    K    F+ + + ++ P
Sbjct: 232 ACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAP 291

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG--CYPD 213
           D  T    +    +  LY   +E+F  M +    C PD
Sbjct: 292 DTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPD 329



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +T  L  +  S     A  VF EM++    P   S+  L+ AY   G + +   +++
Sbjct: 400 IVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLH 459

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M + G++PD   I+++L   GR  Q  K+  +L A +      +   YN  I  Y   G
Sbjct: 460 EMEQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLG 519

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWT 183
             +K   L+ S+    +KPD VT+ 
Sbjct: 520 DYKKALELYTSMRTGNVKPDAVTYN 544



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 52/105 (49%)

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           +Y A    Y ++I ++ R   +++  GLF  +   R KPD  T+ S + A++R   +R  
Sbjct: 148 NYCARNDIYGMMIRLHARHNQVDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWA 207

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + I ++M  A   P   T   +I+AC +    ++   L + M ++
Sbjct: 208 INIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTEN 252



 Score = 43.5 bits (101), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 50/109 (45%)

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+ L+ R  Q ++   +   M++     D  TYN LI+ + R G       +   +    
Sbjct: 159 MIRLHARHNQVDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAA 218

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + P   T+ + + A      +++ LE+ ++M + G  PD  T  +++SA
Sbjct: 219 IPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSA 267


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 91/188 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M   G +P + ++ L++    K G ++   G++N     G  PD F  N++++
Sbjct: 410 ALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLID 469

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +    +K  E+L  M       D+ TYN L+N   +   ++ +   F+++  K   P
Sbjct: 470 GYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTP 529

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++T+   + ++ + +     +E+F+EM   G  PD  T   LI    S  ++++   L 
Sbjct: 530 NIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELF 589

Query: 238 RTMHKDMK 245
            T+ K+ K
Sbjct: 590 VTIEKEYK 597



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 95/188 (50%), Gaps = 9/188 (4%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNLF F   I          +A  + E +   G+TP + S+  L+  + K   + + E  
Sbjct: 249 PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECY 308

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL-TAMEKGSYAADISTYNILINIYG 155
           +++M  SG++P+ F  N+++N + + G  +  +++L  AM KG +  D  TY+ LIN   
Sbjct: 309 LHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKG-FIPDEFTYSSLINGLC 367

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             G + +   +F     K  K  ++ + + +   S++ L  + L++ ++M++ GC PD  
Sbjct: 368 NDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIW 427

Query: 216 TAKVLISA 223
           T  ++++ 
Sbjct: 428 TYNLVVNG 435



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 95/220 (43%), Gaps = 35/220 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN--------------------VAKC 93
           YFS AH V+  MK +GI P + +H + + ++  TG                     V+ C
Sbjct: 126 YFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYC 185

Query: 94  EGV---------------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
             +                ++M K G+ PD    N ++++  + G  ++ E++ + + K 
Sbjct: 186 AVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR 245

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               ++ T+NI I    R G I++   L +S+ ++ L PDV+++ + +  + +       
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
                +M+++G  P+  T   +I+       ++    ++R
Sbjct: 306 ECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILR 345



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 2/184 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AVF E    G   ++  +  L+   SK G V +   ++  M + G  PD +  N ++N
Sbjct: 375 AMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVN 434

Query: 118 LYGRLGQFEKMEEVLT-AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
              ++G       +L  A+ KG    DI T+N LI+ Y +   ++K   +  ++ +  + 
Sbjct: 435 GLCKMGCLSDANGILNDAIAKGC-IPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT 493

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV+T+ + L    + +     ++ F+ M++ GC P+  T  +LI +   + ++ +   L
Sbjct: 494 PDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMEL 553

Query: 237 VRTM 240
            + M
Sbjct: 554 FKEM 557



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 96/210 (45%), Gaps = 3/210 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A+ +F+EM + GI P + +   L+    K GNV + E + +++ K G+ P+ F  N  +
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R G  ++   +L ++       D+ +YN LI  + +   + + E     +    ++
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE 318

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTT 235
           P+  T+ + +  + +  + +   +I  + +  G  PD  T   LI+  C+  D    +  
Sbjct: 319 PNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAV 378

Query: 236 LVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
               M K  K ++ +Y  L   KG+++  L
Sbjct: 379 FYEAMEKGFKHSIILYNTLV--KGLSKQGL 406



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 67/148 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA+ +  +    G  P + +   L+  Y K  N+ K   +++ M   G+ PD    N+
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNT 501

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN   +  + + + +   AM +     +I TYNILI  + +   + +   LF+ +  + 
Sbjct: 502 LLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRG 561

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           L PD+VT  + +          +  E+F
Sbjct: 562 LTPDIVTLCTLICGLCSNGELDKAYELF 589



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 87/202 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +  +    G  P   ++  L+      G++ +   V  +  + G K    + N++
Sbjct: 338 QNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTL 397

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G   +  +++  M +   + DI TYN+++N   + G +    G+     AK  
Sbjct: 398 VKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGC 457

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+ T+ + +  Y +++   + +EI + M+  G  PD  T   L++      +++ V  
Sbjct: 458 IPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVD 517

Query: 236 LVRTMHKDMKTALPIYFNLYGE 257
             + M +   T   I +N+  E
Sbjct: 518 TFKAMLEKGCTPNIITYNILIE 539



 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 79/192 (41%), Gaps = 8/192 (4%)

Query: 59  HAVFEEMKRL--GITPTMKSHML------LLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           H  FE M+ +   +   + S ML      ++  Y + G V +   V  +M     +P   
Sbjct: 53  HGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQ 112

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N+++N+    G F +  +V   M+      D+ T+ I +  +   G       L  ++
Sbjct: 113 SYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNM 172

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           P +  + + V++ + ++ + ++        +F+EM+  G  PD  T   LI     +  +
Sbjct: 173 PGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNV 232

Query: 231 EQVTTLVRTMHK 242
           ++   L   + K
Sbjct: 233 QESEKLFSKVMK 244



 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 1/113 (0%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS-TYNILINIYGRGGFI 160
           + G K        M+   G  G+FE ME+VL  M K   +  +   Y  ++  YGR G +
Sbjct: 33  EDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKV 92

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           ++   +F+ +     +P V ++ + +        + +  +++  M D G YPD
Sbjct: 93  QEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPD 145



 Score = 40.4 bits (93), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 8/179 (4%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+  +   I         S+A  +F+EMK  G+TP + +   L+      G + K   
Sbjct: 528 TPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYE 587

Query: 96  VINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           +   + K       T + N M+N +         E++   M     A D  TY ++I+ Y
Sbjct: 588 LFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSY 647

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            + G I+          +K L P   T    L            + I   M+  G  P+
Sbjct: 648 CKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 3/178 (1%)

Query: 57  DAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINS 114
           +A  +F ++K   G   T++++  ++      G     E V+ +M K+   K    V   
Sbjct: 22  NALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG 81

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  YGR G+ ++   V   M+       + +YN ++NI    G+  +   ++  +    
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED-QIE 231
           + PDV T T R+ ++         L +   M   GC  +  +   +IS    E+ QIE
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIE 199


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 53  IYFSDAH---AVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           ++ SDA+   A+F +M  R  ++P + S + +L A +      +   V     +SGL  D
Sbjct: 339 MWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDD 398

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            FV N+++++Y + G+ E+  +V   M+      D+ ++N ++  Y + G +E    LF+
Sbjct: 399 VFVGNAVVDMYAKCGKMEEANKVFQRMK----FKDVVSWNAMVTGYSQAGRLEHALSLFE 454

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
            +  + ++ DVVTWT+ +  Y+++      L++F +M D G  P+  T   L+SAC S
Sbjct: 455 RMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVS 512



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 7/168 (4%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHK--SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
           +++  Y++ G+      + + M K    +KP+ F ++  L    RL       +V   + 
Sbjct: 581 VMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVL 640

Query: 137 KGSYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
           +  Y +  +   N LI++Y + G ++  + +F ++P +    + V+WTS +  Y      
Sbjct: 641 RNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQR----NAVSWTSLMTGYGMHGRG 696

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
              L +F+EM      PDG T  V++ ACS    ++        M KD
Sbjct: 697 EDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKD 744



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 12/178 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++FE M    I   + +   ++T Y++ G   +   V  QM   G +P+   + S+L+
Sbjct: 449 ALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLS 508

Query: 118 --------LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
                   L+G+      ++ +L        A D+   N LI++Y +    E    +F S
Sbjct: 509 ACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDS 568

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM--IDAGCYPDGGTAKVLISACS 225
           +  K    DVVTWT  +  Y++       L++F  M  +D    P+  T    + AC+
Sbjct: 569 VSPK--DRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACA 624



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 6/184 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVINSML 116
           AH +F+++   GI   + S   +++AY    +      + ++M    L  PD   + ++L
Sbjct: 313 AHNMFDDLCHRGIQ-DLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNIL 371

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                L    +  +V     +     D+   N ++++Y + G +E+   +FQ +  K   
Sbjct: 372 PACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFK--- 428

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DVV+W + +  YS+       L +FE M +     D  T   +I+  +   Q  +   +
Sbjct: 429 -DVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDV 487

Query: 237 VRTM 240
            R M
Sbjct: 488 FRQM 491



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/186 (18%), Positives = 79/186 (42%), Gaps = 4/186 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   ++ +MK LG TP   +   +  A +   +++    +   + +SG   + FV N+++
Sbjct: 242 DVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVV 301

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++YG+ G       +   +  +G    D+ ++N +++ Y           LF  +  + L
Sbjct: 302 SMYGKCGALRHAHNMFDDLCHRG--IQDLVSWNSVVSAYMWASDANTALALFHKMTTRHL 359

Query: 176 -KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV++  + L A +      R  ++    I +G   D      ++   +   ++E+  
Sbjct: 360 MSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEAN 419

Query: 235 TLVRTM 240
            + + M
Sbjct: 420 KVFQRM 425


>gi|145358679|ref|NP_198856.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171831|sp|Q9FND8.1|PP409_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g40400
 gi|10178151|dbj|BAB11596.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|110742507|dbj|BAE99171.1| hypothetical protein [Arabidopsis thaliana]
 gi|332007160|gb|AED94543.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 610

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 77/148 (52%)

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           C  V + M + G+ P+T+  N + N++     F ++++ L  ME+  +  D+ TYN L++
Sbjct: 220 CWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVS 279

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            Y R G +++   L++ +  +R+ PD+VT+TS +    +    R   + F  M+D G  P
Sbjct: 280 SYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKP 339

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           D  +   LI A   E  ++Q   L+  M
Sbjct: 340 DCMSYNTLIYAYCKEGMMQQSKKLLHEM 367



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 89/193 (46%), Gaps = 1/193 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   V+  M R+GI P   +  +L   +    N  + +  + +M + G +PD    N+++
Sbjct: 219 DCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLV 278

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G+ ++   +   M +     D+ TY  LI    + G + +    F  +  + +K
Sbjct: 279 SSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIK 338

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD +++ + + AY ++ + ++  ++  EM+     PD  T KV++     E ++      
Sbjct: 339 PDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNF 398

Query: 237 VRTMHKDMKTALP 249
           V  + + +K  +P
Sbjct: 399 VVELRR-LKVDIP 410



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/145 (19%), Positives = 61/145 (42%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF     F +     E+M+  G  P + ++  L+++Y + G + +   +   M++  + P
Sbjct: 245 VFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVP 304

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D     S++    + G+  +  +    M       D  +YN LI  Y + G +++ + L 
Sbjct: 305 DLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLL 364

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRK 192
             +    + PD  T    +  + R+
Sbjct: 365 HEMLGNSVVPDRFTCKVIVEGFVRE 389


>gi|356529889|ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
           chloroplastic-like [Glycine max]
          Length = 526

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 6/173 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  DAH +F++M +   +    +   L++ Y++ G+  +   +  QM + G++ D F   
Sbjct: 140 YLDDAHDLFDQMAKRDTSAFPWNS--LISGYAQVGHYDEAIALYFQMVEEGVEADLFTFP 197

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L +   +G  +  EEV     +  +AAD    N L+++Y + G I K   +F  +P +
Sbjct: 198 RVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHR 257

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
               D V+W S L AY    L  + + IF +M+  GC PD  +   +++  SS
Sbjct: 258 ----DPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSS 306



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 17/189 (8%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +LTAY   G   +   +  QM   G +PD+  I+++L     LG   ++   + +     
Sbjct: 265 MLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSLGLGVQIHGWVISQ---G 321

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +  ++S  N LI +Y   G +EK   +F  +P +    DVV+W S ++A+ ++   R  L
Sbjct: 322 HEWNLSIANSLIMMYSNHGRLEKARWVFNLMPER----DVVSWNSIISAHCKR---REAL 374

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI------YFN 253
             FE+M  AG  PD  T   ++SAC+    ++    L   M    K   PI        N
Sbjct: 375 AFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGERLFALMCGKYKIK-PIMEHYGCMVN 433

Query: 254 LYGEKGVAR 262
           LYG  G+ +
Sbjct: 434 LYGRAGLIK 442


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 25/218 (11%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++++M +LG+   +  + +LL A  K+G+V K E V+++M    + PD F  N++++LY 
Sbjct: 193 IYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYC 252

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G   +   V   ME    + DI TYN LI  + R G + +   LF+ +  K + P+ V
Sbjct: 253 KKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDI--KDVTPNHV 310

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP-------------DGG---TAKVLISAC 224
           T+TS +  Y R       L + E M + G YP             +GG    A +L++  
Sbjct: 311 TYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNE- 369

Query: 225 SSEDQIE----QVTTLVRTMHK--DMKTALPIYFNLYG 256
            SE +IE       TL+    K  DM++AL +   + G
Sbjct: 370 MSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVG 407



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 9/233 (3%)

Query: 22  NFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSD---AHAVFEEMKRLGITPTMKSHM 78
           N+ +    S  ML      +H      F+ +I F D     +V   + ++   P + SH+
Sbjct: 79  NYKHSLQSSWTMLYILTKHKHFKTAHAFLENIAFKDFLSTQSVLSSLVKIHDDPDVNSHV 138

Query: 79  L--LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
           L  L+  Y  +    +   V   M  +G +P       +LN   +    + + ++   M 
Sbjct: 139 LSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMV 198

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           K    A+I  YN+L++   + G +EK E +   +  K + PD+ T+ + ++ Y +K ++ 
Sbjct: 199 KLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHY 258

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
             L + + M  AG  PD  T   LI     E ++ +   L R    D+K   P
Sbjct: 259 EALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFR----DIKDVTP 307



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 2/184 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VFE M+  G  P + +  +LL + +K         +  +M K G+  +  V N +L
Sbjct: 154 EAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLL 213

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  EK E+VL+ ME      D+ TYN LI++Y + G   +   +   +    + 
Sbjct: 214 HACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGIS 273

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+ T+ S +  + R+   R  +++F ++ D    P+  T   LI      + +++   L
Sbjct: 274 PDIFTYNSLIYGFCREGRMREAVQLFRDIKDVT--PNHVTYTSLIDGYCRVNDLDEALRL 331

Query: 237 VRTM 240
              M
Sbjct: 332 KEVM 335



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 100/207 (48%), Gaps = 15/207 (7%)

Query: 44  PNLFVF--IFSIYFS-----DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+LF +  + S+Y       +A +V + M+  GI+P + ++  L+  + + G + +   +
Sbjct: 239 PDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQL 298

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFE---KMEEVLTAMEKGSYAADISTYNILINI 153
              +    + P+     S+++ Y R+   +   +++EV++  EKG Y   I TYN ++  
Sbjct: 299 FRDI--KDVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMS--EKGLYPTVI-TYNSILRK 353

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
              GG +     L   +  ++++PD VT  + + AY +    R  L++ ++M+ AG   D
Sbjct: 354 LCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLD 413

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTM 240
             T K LI       +I++   L+  M
Sbjct: 414 QFTYKALIHGFCKAKEIDKAKELLFGM 440



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 72/159 (45%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           E M   G+ PT+ ++  +L    + G +     ++N+M +  ++PD    N+++N Y ++
Sbjct: 333 EVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKI 392

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G      +V   M       D  TY  LI+ + +   I+K + L   +      P   T+
Sbjct: 393 GDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTY 452

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +  + +Y +++     +++ +E++  G   D    + LI
Sbjct: 453 SWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALI 491



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 9/201 (4%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++F +   IY         +A  +F ++K   +TP   ++  L+  Y +  ++ +   
Sbjct: 273 SPDIFTYNSLIYGFCREGRMREAVQLFRDIK--DVTPNHVTYTSLIDGYCRVNDLDEALR 330

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M + GL P     NS+L      G+      +L  M +     D  T N LIN Y 
Sbjct: 331 LKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYC 390

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +     +   +    LK D  T+ + +  + + K   +  E+   M+DAG  P   
Sbjct: 391 KIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYC 450

Query: 216 TAKVLISACSSEDQIEQVTTL 236
           T   L+ +   +   E V  L
Sbjct: 451 TYSWLVDSYCKQQNEEAVIKL 471



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA+ +  EM    I P   +   L+ AY K G++     V ++M  +GLK D F   +++
Sbjct: 362 DANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALI 421

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + +  + +K +E+L  M    ++    TY+ L++ Y +    E +  L   L  + L 
Sbjct: 422 HGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLC 481

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            DV  + + +  + + +       +   M D G + D 
Sbjct: 482 VDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDS 519


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 100/210 (47%), Gaps = 17/210 (8%)

Query: 11  LCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVF--IFSIYFSD-----AHAVFE 63
           LC  +    +WN  Y    S             P++  F  I + Y  +     A A+  
Sbjct: 223 LCKMENISEAWNVVYKMTASGMQ----------PDVVTFNTIATAYAQNGKTAQAEAMIL 272

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+R  + P  ++  ++++ Y + G V +    + +M   G++P+  V+NS++N +  + 
Sbjct: 273 EMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMM 332

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             + ++EVL  ME+     D+ TY+ ++N + + GF+EK + ++ ++    +KPD   ++
Sbjct: 333 DRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYS 392

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
                Y R +   +  E+   M  +G +P+
Sbjct: 393 ILAKGYVRAQEMEKAEEMLTVMTKSGVHPN 422



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  V  +M   G+ P + +   + TAY++ G  A+ E +I +M ++ LKP+      
Sbjct: 229 ISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTI 288

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM-----EGLFQS 169
           +++ Y R G+ ++    +  M+      ++   N L+N     GF++ M     + + + 
Sbjct: 289 IISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVN-----GFVDMMDRDGVDEVLKL 343

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +   +++PDV+T+++ + A+S+     +C EI+  M+ +G  PD     +L        +
Sbjct: 344 MEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQE 403

Query: 230 IEQVTTLVRTMHK 242
           +E+   ++  M K
Sbjct: 404 MEKAEEMLTVMTK 416



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 116/257 (45%), Gaps = 16/257 (6%)

Query: 3   KPQCTTC----DLCVAQRAPHSWNF---NYLPYPSHFMLINFLLLQHTPNLFVFIFSI-- 53
           +P CT C    D  + +      N    +  P  +  +  N +   H P+L  +   +  
Sbjct: 57  QPSCTFCMGKNDCQIVRSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNA 116

Query: 54  -----YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
                YF   H++   ++   + P       L+ A++++GN+   + V+ +M +SGLKP 
Sbjct: 117 LTTQKYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPS 176

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLF 167
               N+++  YG  G+ ++  ++L  M  +G+   ++ TYN+LI    +   I +   + 
Sbjct: 177 ACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVV 236

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             + A  ++PDVVT+ +   AY++     +   +  EM      P+  T  ++IS    E
Sbjct: 237 YKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCRE 296

Query: 228 DQIEQVTTLVRTMHKDM 244
            ++++    V  M KD+
Sbjct: 297 GKVQEALRFVYRM-KDL 312



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 2/216 (0%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           M  N ++L    N FV +      D   V + M+   I P + ++  ++ A+S+ G + K
Sbjct: 314 MQPNLIVLNSLVNGFVDMMDRDGVDE--VLKLMEEFQIRPDVITYSTIMNAWSQAGFLEK 371

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           C+ + N M KSG+KPD    + +   Y R  + EK EE+LT M K     ++  +  +I+
Sbjct: 372 CKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVIS 431

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            +   G ++    +F  +    + P++ T+ + +  Y+  K   +   + + M +    P
Sbjct: 432 GWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQP 491

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248
              T  ++  A       E+  TL+RT+   M  ++
Sbjct: 492 KKSTILLVAEAWRFAGFKERAKTLLRTVKAKMANSI 527


>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
 gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ EM   G+TP   ++  L+    + G + + + +   MHK+G  PD F  + +L+
Sbjct: 48  AKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLD 107

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G   K   +  AM+  S   D+  YNIL++   + G ++    LF  L  K L+P
Sbjct: 108 GLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQP 167

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +V  +T+ +    ++ L    LE F  M + GC PD  +  V+I  
Sbjct: 168 NVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRG 213



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 90/187 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ M   G  P +  + +L+  Y K   + K + + N+M   GL PD    N+++
Sbjct: 12  EARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLI 71

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +LG+  + +++   M K     D+  Y+IL++   + G++ K   LF+++ +  LK
Sbjct: 72  HGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLK 131

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+V +   + A  +    +   E+F E+   G  P+      +I+    E  +++    
Sbjct: 132 PDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEA 191

Query: 237 VRTMHKD 243
            R M +D
Sbjct: 192 FRNMEED 198



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 71/161 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ M + G  P + ++ +LL    K G + K   +   M  S LKPD  + N ++
Sbjct: 82  EAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILV 141

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  +   E+ + +       ++  Y  +IN   + G +++    F+++      
Sbjct: 142 DAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCP 201

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           PD  ++   +  + + K   R + +  EM D G   D GT 
Sbjct: 202 PDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFIADVGTT 242



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 1/123 (0%)

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           ++   M    Y  D+  YNILIN Y +   I+K + L+  +  + L PD VT+ + +   
Sbjct: 15  KLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGL 74

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KDMKTAL 248
            +    R   ++F+ M   G  PD     +L+     +  + +   L R M    +K  L
Sbjct: 75  CQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDL 134

Query: 249 PIY 251
            +Y
Sbjct: 135 VMY 137



 Score = 44.7 bits (104), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+LF +   +       Y   A  +F  M+   + P +  + +L+ A  K+GN+     +
Sbjct: 97  PDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDAREL 156

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
            +++   GL+P+  +  +++N   + G  ++  E    ME+     D  +YN++I
Sbjct: 157 FSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVII 211


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 1/186 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF++M     +P ++S+  L+ A+    N+ +   V N+M + G+KPD  V N+M+
Sbjct: 317 EARQVFDKMHGQ-YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMI 375

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  +  +  ++   M+      ++ TY +LI  + + G ++     F+ +   R +
Sbjct: 376 EGLLRGQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQ 435

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV T+T  L  Y   K   R   + EEM   GC PD  T   LI   ++    +    +
Sbjct: 436 PDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARI 495

Query: 237 VRTMHK 242
            + M K
Sbjct: 496 YKKMIK 501



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 1/201 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FE MK  G  P + ++ +L+  + K G +        +M ++  +PD      +L
Sbjct: 386 EALKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLL 445

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG   + +++  VL  M +     D  TYN LI +       +    +++ +  K L+
Sbjct: 446 VGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLE 505

Query: 177 PDVVTWTSRLAAY-SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           P + T+   + +Y    + Y     ++EEM   G  PD  +  V I+      + E+   
Sbjct: 506 PTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTVFINGHIRHGRPEEAYK 565

Query: 236 LVRTMHKDMKTALPIYFNLYG 256
            +  M     TA  I +N + 
Sbjct: 566 YIEEMINKGMTAPQIDYNKFA 586



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 5/150 (3%)

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G    T     ML++ G+  QFE M  ++  M K   A  +  + + I  +   G I+  
Sbjct: 225 GFTHTTITYCKMLHILGKTRQFEMMVAIIQEMGKVG-ALSMDAFKVAIKSFAAAGEIKNA 283

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLIS 222
            G+F+ +        V ++   L A + + L R   ++F++M   G Y PD  +   L+ 
Sbjct: 284 VGVFELMKKNGFDDGVESFNCLLVALANEGLGREARQVFDKM--HGQYSPDLRSYTALML 341

Query: 223 A-CSSEDQIEQVTTLVRTMHKDMKTALPIY 251
           A C++ + +E        + K MK  + ++
Sbjct: 342 AWCNARNLVEAGRVWNEMLEKGMKPDVVVH 371


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 81/167 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM + GI P   ++ ++++   ++  V     + ++M  SG+ PD    N++L
Sbjct: 214 DALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALL 273

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N +  L + ++   +L   EK  Y  D+  Y+ LI    R    E ++ L++ +    +K
Sbjct: 274 NGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVK 333

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PDV  +T  +   +     R  LE+  EM ++G  PD     VLI  
Sbjct: 334 PDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKG 380



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 80/182 (43%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E +K  GI     +  +L+  Y K G   K       M      PD +  N +L++  +
Sbjct: 114 LEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQ 173

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
                    V T M K +   +++T++ILI+   + G ++    LF  +  + + PD  T
Sbjct: 174 KNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFT 233

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   ++   R K       +F++M D+G  PD  T   L++     D++++  +L+R   
Sbjct: 234 YCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFE 293

Query: 242 KD 243
           KD
Sbjct: 294 KD 295



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 22/217 (10%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV----- 111
           DA  +F EM++LG  P+  +   L+    KTG + K   +  +M + G  P  F+     
Sbjct: 424 DAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM-EIGRNPSLFLRLSQG 482

Query: 112 ---------INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
                    +  M+      G   K   +L  +     A  I TYNIL+N + + G    
Sbjct: 483 PSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNG 542

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              LF+ +  K L PD VT+ + +    R +      ++F++M   GC PD    + +++
Sbjct: 543 AYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMT 602

Query: 223 ACSSEDQIEQVTTL-------VRTMHKDMKTALPIYF 252
                 ++ +  +L       +R+   +   A+  YF
Sbjct: 603 WMCRRMELPRAFSLWLKYLRNIRSQEDEAIKAIEGYF 639



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 80/221 (36%), Gaps = 35/221 (15%)

Query: 56  SDAHAVFEEMKRLGITPT----------------MKSHMLLLTAYSKTGNVAKCEG---- 95
            DA+ +F++MK  G+ P                 +     LL  + K G V    G    
Sbjct: 248 DDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCL 307

Query: 96  ---------------VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
                          +  +M +  +KPD ++   M+      G+     E+L  M +   
Sbjct: 308 IRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGV 367

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             D   YN+LI  +   G + +   L   +      P+V T++  ++   R  L R   E
Sbjct: 368 VPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQE 427

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           IF EM   GCYP   T   LI       Q+E+   L   M 
Sbjct: 428 IFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKME 468



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 13/202 (6%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A ++  E+ R    P +K++ +L++   + G     + + N+M K G  P     NS
Sbjct: 387 LSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNS 446

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKG-------------SYAADISTYNILINIYGRGGFIE 161
           +++   + GQ EK   +   ME G             S+  D ++   ++      G I 
Sbjct: 447 LIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIH 506

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           K   +   L      P + T+   +  + +   +    ++F EM   G  PD  T   LI
Sbjct: 507 KAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLI 566

Query: 222 SACSSEDQIEQVTTLVRTMHKD 243
           +      + E    +   M K+
Sbjct: 567 NGLLRFQREEDAYKVFDQMEKN 588



 Score = 40.4 bits (93), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 43/111 (38%)

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           + L A++ G        + +LI +Y + G  +K    F S+      PDV T+   L   
Sbjct: 112 QTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVL 171

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +K      L ++  M+   C P+  T  +LI        ++    L   M
Sbjct: 172 IQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEM 222


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  ++  GI P + S+ +L+  Y K  N+AK   +  ++ + GLKPDT   +++L+
Sbjct: 327 ARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILH 386

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               +G+    +++   M +     DI  ++ L+  Y + G +E+   LF  L   R   
Sbjct: 387 GLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDT 446

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++  +T  +    +    R    IFE++   G  PD  T  V+I+    E   ++V  ++
Sbjct: 447 NISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGIL 506

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSN 264
           R M  +   A  I +N+  + G  RSN
Sbjct: 507 RKMEDNGCPANNITYNVIMQ-GFFRSN 532



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 88/159 (55%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M++    P ++++ +++ A  K  N+     ++N+M +  + P+ F  NS+++   +LGQ
Sbjct: 194 MEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQ 253

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           +EK++ +L+ M   +   ++ T++ILI+   + G +E  + + + +  K ++PD++T+++
Sbjct: 254 WEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSA 313

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +  Y  +    R   +F  + D G  P+  +  +LI+ 
Sbjct: 314 IMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILING 352



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 81/165 (49%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
            I    A  +  EMK+  I P + ++  L+    K G   K + ++++M    + P+   
Sbjct: 216 DINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHT 275

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            + +++   + G+ E  +EV+  M +     DI TY+ +++ Y   G +++   +F  L 
Sbjct: 276 FSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLR 335

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            K +KP++ +++  +  Y +KK   + +++F E+   G  PD  T
Sbjct: 336 DKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVT 380



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 64/135 (47%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+  +  +++N   + G  EK   +L  ME+G+   D+ TY+I+I+   +   ++    
Sbjct: 165 EPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAIN 224

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L   +  K + P++ T+ S +    +   + +   +  EM++    P+  T  +LI    
Sbjct: 225 LLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLC 284

Query: 226 SEDQIEQVTTLVRTM 240
            E ++E    ++R M
Sbjct: 285 KEGKVEDADEVMRHM 299



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 74/174 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM R+G TP +  H  LL  Y K G V +   + +++ ++    +      ++
Sbjct: 396 DAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVI 455

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   +  +  +   +   +       D+ TYN++I  + R G  ++++G+ + +      
Sbjct: 456 NGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCP 515

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
            + +T+   +  + R       +   +EM   G   D  T  VLI+       I
Sbjct: 516 ANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKENPSI 569



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 1/178 (0%)

Query: 56  SDAHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +DA  +F+++ R  I  P    +  ++   SK G+  K   ++  M +   KPD    + 
Sbjct: 149 TDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSI 208

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +    +    +L  M++ +   +I TYN LI+   + G  EK++ L   +    
Sbjct: 209 VIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLN 268

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + P+V T++  +    ++       E+   MI+ G  PD  T   ++       Q+++
Sbjct: 269 INPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDR 326


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 79/159 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VF+EMK  GI P + S+ +L+  + + G V +   V  +M  SG+ P+ +  + 
Sbjct: 296 LDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSI 355

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ +K  EV   M+      D+ +Y+ILI+ + R G ++     ++ + +  
Sbjct: 356 LIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNN 415

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             P    + S +  Y + K +   L+ F  M   G +PD
Sbjct: 416 FSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPD 454



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 13/200 (6%)

Query: 35  INFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           I F +  +T  + +FI       A+ +F+ MK   + P   ++  L+  +  TG + +  
Sbjct: 556 ITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRAR 615

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINI 153
            + ++M + G  P+       +N Y +L +  +  ++   M E+G Y   I  Y +LI  
Sbjct: 616 ALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQI-LYTMLIAA 674

Query: 154 YGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +   G + + E LF  +  + R  P+VV +T  + +Y +     +  +++EEM       
Sbjct: 675 FCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEM------- 727

Query: 213 DGGTAKVLISACSSEDQIEQ 232
               AK L   CSSE  + +
Sbjct: 728 ---RAKGLSRLCSSEGSVSE 744



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 83/181 (45%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +EEM     +P+  ++  L+  Y K+   A        M K G+ PDT   N +L++Y R
Sbjct: 408 WEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCR 467

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
              F K   +    ++     +  +YN  I+   RG   EK   L   +  + + PDVV 
Sbjct: 468 KPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVN 527

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +++ ++ ++++    + + +F +M   G   +  T  +LI+   S+ +++    L + M 
Sbjct: 528 YSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMK 587

Query: 242 K 242
           +
Sbjct: 588 E 588



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 68/155 (43%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G + +   V  +M  SG+ PD +  + +++ + R G+ ++  EV   M       +I +Y
Sbjct: 294 GILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSY 353

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           +ILI+ + + G ++K   +F+ +    + PDV +++  +  + RK      ++ +EEM  
Sbjct: 354 SILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTS 413

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
               P       LI       Q        R M K
Sbjct: 414 NNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQK 448



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S+    A  +  ++   G TP + ++   +    K G       +I  + +     +   
Sbjct: 223 SVDIRRASEILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHC 282

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N+++    + G  ++  EV   M+      D+ +Y+ILI+ + R G +++   +F+ + 
Sbjct: 283 FNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMR 342

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
              + P++ +++  +  + ++    + LE+FEEM ++G  PD  +  +LI   C   D
Sbjct: 343 NSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGD 400



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 81/185 (43%), Gaps = 1/185 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F +M ++GIT  +K++ +L+  +     +     +   M +S + PD     S++ 
Sbjct: 544 AVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVA 603

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G+  +   +   M +   + ++ TY   IN Y +     +   L++ +  + + P
Sbjct: 604 GFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYP 663

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIEQVTTL 236
           D + +T  +AA+       R   +F+EM   G C P+      LI++    ++ +Q   L
Sbjct: 664 DQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKL 723

Query: 237 VRTMH 241
              M 
Sbjct: 724 YEEMR 728



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/184 (15%), Positives = 88/184 (47%), Gaps = 4/184 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +FE + + G  P + ++ +++  + +    + ++ +   ++ +++ SG  P+     + +
Sbjct: 193 LFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYI 252

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               ++G F     ++  + + +   +   +N +I    +GG +++   +F+ +    + 
Sbjct: 253 KGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGIL 312

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV +++  +  + RK    +  E+F+EM ++G  P+  +  +LI     E ++++   +
Sbjct: 313 PDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEV 372

Query: 237 VRTM 240
              M
Sbjct: 373 FEEM 376



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 80/179 (44%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M +  + P + ++  L++ ++K  N  K   +  +M K G+  +      ++NL+    +
Sbjct: 516 MLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCK 575

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +    +   M++     D   Y  L+  +   G + +   LF  +  +   P+VVT+T 
Sbjct: 576 MDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTC 635

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +  Y +     +  +++E+M + G YPD     +LI+A  +  ++ +   L   M ++
Sbjct: 636 FINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQE 694


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 89/185 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+F EM  L I P + +  +L+    K G +++ +G+I  M + G++P+    NS++
Sbjct: 277 EASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLM 336

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y    +  +   V  AM       ++ +YNILIN Y +   I++   LF  +  + L 
Sbjct: 337 NGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLI 396

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+   + + ++   +   +    E+F++M   GC PD  T  +L+ +      ++    L
Sbjct: 397 PNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRL 456

Query: 237 VRTMH 241
            R M 
Sbjct: 457 FRAMQ 461



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+  +S+   V     V+ ++ K G +PD    +S++N      +F +  E    M   
Sbjct: 124 ILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVAS 183

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            Y  ++ TYN +I  + + G      GL + +     +PD+V + + +    + +L    
Sbjct: 184 GYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEA 243

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           L+IF E+   G  PD  T  +L+    + DQ E+ + L   M
Sbjct: 244 LDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEM 285



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 98/238 (41%), Gaps = 37/238 (15%)

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           F   F+ A   F+EM   G  P + ++  ++  + K G      G++ +M K+G +PD  
Sbjct: 166 FEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIV 225

Query: 111 VINSM-------------LNLYGRL----------------------GQFEKMEEVLTAM 135
           + N++             L+++  +                       Q E+   +   M
Sbjct: 226 IYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEM 285

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
              +   D+ T+NIL++   + G + + +G+ + +  K ++P+  T+ S +  Y  +   
Sbjct: 286 MSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKV 345

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
                +F+ MI  GC P+  +  +LI+      +I++   L   M    +  +P  FN
Sbjct: 346 FEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEM--SFRGLIPNTFN 401



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 1/141 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF+ M   G  P + S+ +L+  Y K   + +   + ++M   GL P+TF  N+++
Sbjct: 347 EARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLI 406

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+  +  E+   M+    + D+ T  IL++   + G+++    LF+++    LK
Sbjct: 407 SGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLK 466

Query: 177 PDVVTWTSRL-AAYSRKKLYR 196
           P++VT+   + A Y   K+YR
Sbjct: 467 PNLVTYDILIRAMYKSGKIYR 487



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +F E+K  G+ P + ++ +L+     +    +   + N+M    + PD    N +
Sbjct: 241 SEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNIL 300

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G   + + ++  M +     + +TYN L+N Y     + +   +F ++  K  
Sbjct: 301 VDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGC 360

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVT 234
            P+VV++   +  Y + +      E+F+EM   G  P+      LIS  C +    E   
Sbjct: 361 MPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCE--- 417

Query: 235 TLVRTMHKDMKT 246
              R + KDM+ 
Sbjct: 418 --ARELFKDMQA 427



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 77/183 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +V  ++ +LG  P   +   L+         A+     ++M  SG +P+    N+++ 
Sbjct: 138 AFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIK 197

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + ++G+      +L  M+K     DI  YN +I+   +   + +   +F  +  K ++P
Sbjct: 198 GFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRP 257

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV T++  +              +F EM+     PD  T  +L+     E  + +   ++
Sbjct: 258 DVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGII 317

Query: 238 RTM 240
           + M
Sbjct: 318 KIM 320



 Score = 40.8 bits (94), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 1/143 (0%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +HK  L P     + +L+   R+  +  +  +   +E      D+  +NILIN + R   
Sbjct: 76  IHKHPL-PCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQR 134

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           ++    +   +     +PD VT++S +     +  + R +E F+EM+ +G  P+  T   
Sbjct: 135 VDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNT 194

Query: 220 LISACSSEDQIEQVTTLVRTMHK 242
           +I       +      L++ M K
Sbjct: 195 IIKGFCKIGKTTVAVGLLKKMDK 217


>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 878

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 85/182 (46%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           HA+  EM    I P + ++  L+  YSK         + ++M    ++ D    N+++ L
Sbjct: 352 HAIDVEMPAKNIWPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGL 411

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           Y  LG FE+       ME      D+ TYN LI  YGR     +++ LF  + A+R+ P+
Sbjct: 412 YANLGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPN 471

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
            +T+++ +  Y++ ++Y   ++++ E+   G   D      LI A      IE    L+ 
Sbjct: 472 DLTYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLLD 531

Query: 239 TM 240
            M
Sbjct: 532 VM 533



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 87/185 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F DA  +++EMK L I     S+  L+  Y+  G   +  G   +M   G+K D    N+
Sbjct: 383 FEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTYNA 442

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  YGR  ++ +++++   M+      +  TY+ LI IY +G    +   +++ L  + 
Sbjct: 443 LIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEG 502

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +K DVV +++ + A  +  L    L + + M + G  P+  T   +I A     Q+  + 
Sbjct: 503 MKTDVVFYSALIDALCKNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFKIGQQLPALE 562

Query: 235 TLVRT 239
             V T
Sbjct: 563 CAVDT 567



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 2/153 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVIN 113
           FS+A ++   M + G+ P + ++  ++ A +K           + +M  +G  PD    N
Sbjct: 241 FSEAVSLLRSMGKFGLEPNLVTYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYN 300

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE-KMEGLFQSLPA 172
           S+L      G+++   ++L  ME      D+ TYN  ++   +GG ++     +   +PA
Sbjct: 301 SLLKTCVAKGRWKLCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPA 360

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           K + P+VVT+++ +A YS+ + +   L I++EM
Sbjct: 361 KNIWPNVVTYSTLMAGYSKAERFEDALNIYDEM 393



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 4/138 (2%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG---SYAADISTYNILINIYGRGGFIEKME 164
           +TF+     N+   LG+ +K+E  L   E+     Y   + +++ +I+  GR     +  
Sbjct: 186 NTFMGKLTSNMIRTLGRLKKIELALDLFEESRTRGYGNTVYSFSAMISALGRNNRFSEAV 245

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            L +S+    L+P++VT+ + + A ++ +L +   ++  EEMI AGC PD  T   L+  
Sbjct: 246 SLLRSMGKFGLEPNLVTYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKT 305

Query: 224 CSSEDQIEQVTTLVRTMH 241
           C ++ + +    L+  M 
Sbjct: 306 CVAKGRWKLCRDLLAEME 323



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 66/136 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F +A   F+EM+  GI   + ++  L+  Y +     + + + ++M    + P+    +
Sbjct: 417 WFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYS 476

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++ +Y +   + +  +V   +++     D+  Y+ LI+   + G IE    L   +  K
Sbjct: 477 TLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLLDVMTEK 536

Query: 174 RLKPDVVTWTSRLAAY 189
             +P+VVT+ S + A+
Sbjct: 537 GSRPNVVTYNSIIDAF 552


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 83/193 (43%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S    D   +F EM   G+     ++  L+      G+    + V  QM   G+ PD
Sbjct: 335 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 394

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               + +L+     G+ EK  EV   M+K     DI  Y  +I    + G ++    LF 
Sbjct: 395 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 454

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
           SL  K +KP+VVT+ + ++    K+L +    + ++M + G  PD GT   LI A   + 
Sbjct: 455 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 514

Query: 229 QIEQVTTLVRTMH 241
                  L+R M 
Sbjct: 515 DKAASAELIREMR 527



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 90/190 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  +F+EM+  GI P + ++  L++     G  +    +++ M +  + P+    N
Sbjct: 200 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 259

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + + G+F + E++   M K S   DI TYN LIN +     ++K + +F+ + +K
Sbjct: 260 ALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK 319

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PD+ T+ + +  + + K      E+F EM   G   D  T   LI     +   +  
Sbjct: 320 DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 379

Query: 234 TTLVRTMHKD 243
             + + M  D
Sbjct: 380 QKVFKQMVSD 389



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 93/220 (42%), Gaps = 35/220 (15%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A A+ + M + G  P + ++ +++    K G++     ++N+M  + ++ D  + N++
Sbjct: 132 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 191

Query: 116 -------------LNLYGRL----------------------GQFEKMEEVLTAMEKGSY 140
                        LNL+  +                      G++    ++L+ M +   
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 251

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             ++ T+N LI+ + + G   + E L   +  + + PD+ T+ S +  +       +  +
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 311

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +FE M+   C+PD  T   LI       ++E  T L R M
Sbjct: 312 MFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREM 351



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 84/190 (44%), Gaps = 4/190 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA A+ ++M  +G  P   +   L+         ++   ++++M + G +P+      
Sbjct: 96  ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 155

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G  +    +L  ME     AD+  +N +I+   +   ++    LF+ +  K 
Sbjct: 156 VVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 215

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VVT++S ++       +    ++  +MI+    P+  T   LI A   E +  +  
Sbjct: 216 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 275

Query: 235 TLVRTMHKDM 244
            L    H DM
Sbjct: 276 KL----HDDM 281



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 2/184 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+  +M +LG  P++ +   LL  Y     ++    +++QM + G +PDT    ++++
Sbjct: 64  ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 123

Query: 118 -LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            L+      E +  V   +++G    ++ TY +++N   + G I+    L   + A +++
Sbjct: 124 GLFLHNKASEAVALVDRMVQRGC-QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 182

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            DVV + + + +  + +     L +F+EM   G  P+  T   LIS   S  +    + L
Sbjct: 183 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 242

Query: 237 VRTM 240
           +  M
Sbjct: 243 LSDM 246



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 35/186 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +  +M    I P + +   L+ A+ K G   + E + + M K  + PD F  NS
Sbjct: 236 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNS 295

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK------------ 162
           ++N +    + +K +++   M       D+ TYN LI  + +   +E             
Sbjct: 296 LINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG 355

Query: 163 -----------MEGLF------------QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                      ++GLF            + + +  + PD++T++  L          + L
Sbjct: 356 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 415

Query: 200 EIFEEM 205
           E+F+ M
Sbjct: 416 EVFDYM 421



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M KS   P  F  N +L+   ++ +F+ +  +   M++   + ++ TYNILIN + R   
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           I     L   +     +P +VT +S L  Y   K     + + ++M++ G  PD  T   
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI      ++  +   LV  M
Sbjct: 121 LIHGLFLHNKASEAVALVDRM 141



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 69/174 (39%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           LL+A +K         +  +M + G+  + +  N ++N + R  Q      +L  M K  
Sbjct: 16  LLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLG 75

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y   I T + L+N Y  G  I     L   +     +PD +T+T+ +            +
Sbjct: 76  YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 135

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            + + M+  GC P+  T  V+++       I+    L+  M      A  + FN
Sbjct: 136 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%)

Query: 61   VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            VF EM + G+     ++ +L+    + G+    + +  +M   G+ P+    N++L+   
Sbjct: 1032 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 1091

Query: 121  RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            + G+ EK   V   +++      I TYNI+I    + G +E    LF +L  K +KPDVV
Sbjct: 1092 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVV 1151

Query: 181  TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             + + ++ + RK        +F+EM + G  P+ G    LI A   +   E    L++ M
Sbjct: 1152 AYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 1211

Query: 241  H 241
             
Sbjct: 1212 R 1212



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +F EM + G+     ++  L+  + + G+V K +   +QM   G+ PD +  N +L
Sbjct: 451 DGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILL 510

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 G+ EK   +   M+K     DI TY  +I    + G +E+   LF SL  K LK
Sbjct: 511 GGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLK 570

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           PD+VT+T+ ++    K L      ++ +M   G
Sbjct: 571 PDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 603



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 6/194 (3%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S  +SDA  +  +M +  ITP + ++  LL A+ K G V + + +  +M +  + PD   
Sbjct: 341 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 400

Query: 112 INSMLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            +S++N   L+ R+ +  +M +++ +  KG  A D+ +YN LIN + +   +E    LF+
Sbjct: 401 YSSLINGLCLHDRIDEANQMFDLMVS--KGCLA-DVVSYNTLINGFCKAKRVEDGMKLFR 457

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +  + L  + VT+ + +  + +     +  E F +M   G  PD  T  +L+       
Sbjct: 458 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 517

Query: 229 QIEQVTTLVRTMHK 242
           ++E+   +   M K
Sbjct: 518 ELEKALVIFEDMQK 531



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 91/190 (47%)

Query: 54   YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            +  DA  +F+EM+  GI P + ++  L++     G  +    +++ M +  + PD F  +
Sbjct: 885  HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 944

Query: 114  SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++++ + + G+  + E++   M K S    I TY+ LIN +     +++ + +F+ + +K
Sbjct: 945  ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 1004

Query: 174  RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
               PDVVT+ + +  + + K     +E+F EM   G   +  T  +LI         +  
Sbjct: 1005 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 1064

Query: 234  TTLVRTMHKD 243
              + + M  D
Sbjct: 1065 QEIFKEMVSD 1074



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 87/187 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA ++ ++M  +G  P + ++  ++ +  KT  V        ++ + G++P+     ++
Sbjct: 275 SDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTAL 334

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N      ++     +L+ M K     ++ TY+ L++ + + G + + + LF+ +    +
Sbjct: 335 VNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI 394

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+VT++S +             ++F+ M+  GC  D  +   LI+      ++E    
Sbjct: 395 DPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMK 454

Query: 236 LVRTMHK 242
           L R M +
Sbjct: 455 LFREMSQ 461



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 85/189 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A+ +F+ M   G    + S+  L+  + K   V     +  +M + GL  +T   N+
Sbjct: 414 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 473

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + G  +K +E  + M+    + DI TYNIL+      G +EK   +F+ +  + 
Sbjct: 474 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 533

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +  D+VT+T+ +    +         +F  +   G  PD  T   ++S   ++  + +V 
Sbjct: 534 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVE 593

Query: 235 TLVRTMHKD 243
            L   M ++
Sbjct: 594 ALYTKMKQE 602



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/197 (17%), Positives = 89/197 (45%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A  +  +M++  + P +  +  ++    K  ++     +  +M   G++P+    +S+++
Sbjct: 854  AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 913

Query: 118  LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 G++     +L+ M +     D+ T++ LI+ + + G + + E L+  +  + + P
Sbjct: 914  CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 973

Query: 178  DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             +VT++S +  +          ++FE M+   C+PD  T   LI       ++E+   + 
Sbjct: 974  SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 1033

Query: 238  RTMHKDMKTALPIYFNL 254
            R M +       + +N+
Sbjct: 1034 REMSQRGLVGNTVTYNI 1050



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/185 (18%), Positives = 83/185 (44%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            S+A A+ + M   G  P + ++ +++    K G+      ++N+M +  L+P   + N++
Sbjct: 817  SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTI 876

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            ++   +    +    +   ME      ++ TY+ LI+     G       L   +  +++
Sbjct: 877  IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 936

Query: 176  KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             PDV T+++ + A+ ++       ++++EM+     P   T   LI+     D++++   
Sbjct: 937  NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 996

Query: 236  LVRTM 240
            +   M
Sbjct: 997  MFEFM 1001



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 7/210 (3%)

Query: 40  LQHTPNLFV-------FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           L + PN+         +  S   S+A A+ ++M   G  P   +   L+         ++
Sbjct: 759 LGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASE 818

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              +I++M   G +PD      ++N   + G  +    +L  ME+G     +  YN +I+
Sbjct: 819 AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIID 878

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              +   ++    LF+ +  K ++P+VVT++S ++       +     +  +MI+    P
Sbjct: 879 GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 938

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           D  T   LI A   E ++ +   L   M K
Sbjct: 939 DVFTFSALIDAFVKEGKLVEAEKLYDEMVK 968



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 77/178 (43%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           ++M+ LGI   + +  +++  +     V+    ++ +M K G +PD   I S++N + R 
Sbjct: 212 KKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRR 271

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
            +      ++  M +  Y  DI  YN +I+   +   +      F+ +  K ++P+VVT+
Sbjct: 272 NRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTY 331

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ +        +     +  +MI     P+  T   L+ A     ++ +   L   M
Sbjct: 332 TALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 389



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/203 (17%), Positives = 86/203 (42%), Gaps = 9/203 (4%)

Query: 39   LLQHTPNLFVFIFSIYFS---------DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
            +++   N  VF FS             +A  +++EM +  I P++ ++  L+  +     
Sbjct: 931  MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 990

Query: 90   VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
            + + + +   M      PD    N+++  + +  + E+  EV   M +     +  TYNI
Sbjct: 991  LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 1050

Query: 150  LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            LI    + G  +  + +F+ + +  + P+++T+ + L    +     + + +FE +  + 
Sbjct: 1051 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 1110

Query: 210  CYPDGGTAKVLISACSSEDQIEQ 232
              P   T  ++I       ++E 
Sbjct: 1111 MEPTIYTYNIMIEGMCKAGKVED 1133



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 76/190 (40%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +   DA A+F EM +    P++     LL+A +K         +  QM   G+  + +  
Sbjct: 674 LKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTY 733

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           + ++N + R  Q      VL  M K  Y  +I T + L+N Y     I +   L   +  
Sbjct: 734 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 793

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
              +P+ VT+ + +            + + + M+  GC PD  T  V+++        + 
Sbjct: 794 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 853

Query: 233 VTTLVRTMHK 242
              L+  M +
Sbjct: 854 AFNLLNKMEQ 863



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 75/191 (39%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
            I  +DA  +F +M +    P++     LL+A  K         +  +M   G++ D + 
Sbjct: 166 DIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYT 225

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N ++N +    Q      +L  M K  Y  D  T   L+N + R   +     L   + 
Sbjct: 226 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 285

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               KPD+V + + + +  + K      + F+E+   G  P+  T   L++   +  +  
Sbjct: 286 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 345

Query: 232 QVTTLVRTMHK 242
               L+  M K
Sbjct: 346 DAARLLSDMIK 356


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 100/217 (46%), Gaps = 7/217 (3%)

Query: 44   PNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
            P++F +       + S    DA  + E+M   G +P + ++  LL    K G + +   +
Sbjct: 946  PDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATAL 1005

Query: 97   INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            + +M +SG  P+    N++++ + +LG+ ++   +L  M  G    ++ TY +L++ + +
Sbjct: 1006 LQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCK 1065

Query: 157  GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
             G  E   GL + +  K   P++ T+ S L  + +K    R  ++   MI  GC P+  +
Sbjct: 1066 CGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVS 1125

Query: 217  AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
               +I+      ++ +   L+  M  +      + FN
Sbjct: 1126 YNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 1162



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 44  PNLFVFIFSIY-FSDAHAV------FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+F +   ++ F  A+ V       E+M   G  P + S+  ++    K   V +   V
Sbjct: 263 PNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRV 322

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           +++M + G +P+     ++++ + R+G  +   E++  M +  Y  +  TYN +++++ R
Sbjct: 323 MDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCR 382

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +E+   + Q +      PD + +++ ++ + +    R   ++ E+MI  GC PD   
Sbjct: 383 RNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVAC 442

Query: 217 AKVLISACSSEDQIEQVTTLVR 238
              LI A      I+    L+R
Sbjct: 443 LSTLIDALCKAAAIDSAQELLR 464



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 86/187 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA  +F+ M+  G+ P + ++ +++ ++ K  N+     ++ +M ++   PD    ++
Sbjct: 526 INDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSA 585

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G  +K  +V   M     A ++ TYN LI+   +   +E+   + + +  + 
Sbjct: 586 LINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQS 645

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD +T+T  +              +  EM D GC PD  T   L+ A    + +E V 
Sbjct: 646 CTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVE 705

Query: 235 TLVRTMH 241
            L++ M 
Sbjct: 706 QLLKEME 712



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 88/197 (44%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           + VF        AH V + M + G  P   ++  +++ + K G + +   ++ QM + G 
Sbjct: 377 MHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGC 436

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD   ++++++   +    +  +E+L        A D+  Y+ILI+   +   + + E 
Sbjct: 437 RPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAES 496

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
               +   R  PDVVT+ S +    + +       +F+ M  AG  PD  T  ++I +  
Sbjct: 497 WLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFC 556

Query: 226 SEDQIEQVTTLVRTMHK 242
            ++ ++    ++  M +
Sbjct: 557 KDNNLDSAFKMLERMKE 573



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 2/165 (1%)

Query: 58   AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            A+ +F +M   G+ P   ++ +++++  K   + +   V+  M K+G  P      ++++
Sbjct: 1248 AYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLID 1307

Query: 118  LYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + + G  +K  E+L  +  KGSY  D+ T++I I+   + G + +   L +++    L 
Sbjct: 1308 GFCKTGNLDKALEILQLLLSKGSYP-DVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLV 1366

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            PD VT+ + L  +    L    +++FE M   GC PD  T   L+
Sbjct: 1367 PDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV 1411



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S    DA  + EEM   G  P + S+  +L  + K   V     ++ QM   G  PD   
Sbjct: 243 SDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVS 302

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
             +++N   +L Q ++   V+  M +     ++ TY  L++ + R G ++    L + + 
Sbjct: 303 YTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMT 362

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            +  +P+ +T+ + +  + R+    R  ++ + MI  GC PD      +IS      ++ 
Sbjct: 363 ERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLR 422

Query: 232 QVTTLVRTM 240
           +   L+  M
Sbjct: 423 EAHDLLEQM 431



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 82/169 (48%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              +A A+ + M R G +P + ++  ++  + K G + +   ++ +M   G +P+      
Sbjct: 999  LDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTV 1058

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +L+ + + G+ E    ++  M +  Y  ++ TYN L++++ +   +E+   L  S+  K 
Sbjct: 1059 LLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKG 1118

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              P+VV++ + +A   +       + + E+M+   C PD  T   +I A
Sbjct: 1119 CVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 1167



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 91/206 (44%), Gaps = 8/206 (3%)

Query: 43   TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            +PN+F F   I+          A+ + +EM R G+   +  H +++        +     
Sbjct: 874  SPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALE 933

Query: 96   VINQMHKSG-LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            +  +M +SG   PD F  +++++   + G+ +    ++  M     + ++ TY+ L++  
Sbjct: 934  LFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGL 993

Query: 155  GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
             + G +++   L Q +      P++VT+ + +  + +         + EEM+D GC P+ 
Sbjct: 994  CKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNV 1053

Query: 215  GTAKVLISACSSEDQIEQVTTLVRTM 240
             T  VL+ A     + E    LV  M
Sbjct: 1054 VTYTVLLDAFCKCGKAEDAIGLVEVM 1079



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 1/157 (0%)

Query: 54   YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
            +  +A+ V E M + G  P   ++  L+  + KTGN+ K   ++  +   G  PD    +
Sbjct: 1279 FMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFS 1338

Query: 114  SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
              ++   + G+  +  E+L  M +     D  TYN L+  +      E    LF+ +   
Sbjct: 1339 IFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQC 1398

Query: 174  RLKPDVVTWTSRLAAYSRKKLYRRCL-EIFEEMIDAG 209
              +PD  T+T+ +     KK Y+  L E+ + M+D G
Sbjct: 1399 GCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTG 1435



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 11/217 (5%)

Query: 37   FLLLQH---TPNLFVFIFSIY-------FSDAHAVFEEMKR-LGITPTMKSHMLLLTAYS 85
            F L+Q    TPNL  +   ++       F  A  +  EM R  G +P + ++  ++    
Sbjct: 1181 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 1240

Query: 86   KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
            K+  V +   +  QM   GL PD    + +++   +    ++   VL  M K  +     
Sbjct: 1241 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAI 1300

Query: 146  TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            TY  LI+ + + G ++K   + Q L +K   PDVVT++  +   S++   R+  E+ E M
Sbjct: 1301 TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 1360

Query: 206  IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + AG  PD  T   L+         E    L   M +
Sbjct: 1361 LRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQ 1397



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 55   FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
               A  +F+EM+  G   P + ++  ++ +  K+G V     ++  M   G  P+    +
Sbjct: 928  LDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYS 987

Query: 114  SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            S+L+   + G+ ++   +L  M +   + +I TYN +I+ + + G I++   L + +   
Sbjct: 988  SLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDG 1047

Query: 174  RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              +P+VVT+T  L A+ +       + + E M++ G  P+  T   L+     +D++E+ 
Sbjct: 1048 GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERA 1107

Query: 234  TTLVRTM 240
              L+ +M
Sbjct: 1108 CQLLSSM 1114



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 1/192 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           FI +     A+ +F+EM R G+      H  +L      G  +       +M K+   PD
Sbjct: 171 FIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPD 229

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           +   N+M+N   +  + +    +L  M    +A ++ +YN +++ + +   +E    L +
Sbjct: 230 SVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLE 289

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +  +   PDVV++T+ +    +         + ++MI  GC P+  T   L+       
Sbjct: 290 QMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVG 349

Query: 229 QIEQVTTLVRTM 240
            ++    LVR M
Sbjct: 350 DLDGAVELVRKM 361



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 85/188 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  V ++M + G  P + ++  L+  + + G++     ++ +M + G +P+    N++
Sbjct: 317 DEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNI 376

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++++ R    E+  +VL  M +     D   Y+ +I+ + + G + +   L + +  +  
Sbjct: 377 MHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGC 436

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDV   ++ + A  +        E+    I   C PD     +LI A     ++ +  +
Sbjct: 437 RPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAES 496

Query: 236 LVRTMHKD 243
            +  M K+
Sbjct: 497 WLDVMVKN 504



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 35/233 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMK-----------------------------------SHML 79
             +AH + E+M R G  P +                                    ++ +
Sbjct: 421 LREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSI 480

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ A  K   + + E  ++ M K+   PD    NS+++   +  +      +   M    
Sbjct: 481 LIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAG 540

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+ TY+I+I+ + +   ++    + + +   +  PDVVT+++ +    +     +  
Sbjct: 541 VMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAF 600

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
           ++F+EM+  GC P+  T   LI      +++EQ   ++  M K   T   I +
Sbjct: 601 DVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITY 653



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 89/193 (46%), Gaps = 2/193 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +  + M +    P + ++  ++    K+  +     + ++M  +G+ PD    + ++
Sbjct: 493 EAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVI 552

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + +    +   ++L  M++     D+ TY+ LIN   + G ++K   +FQ +      
Sbjct: 553 HSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCA 612

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++VT+ + +    +     +  E+ E M    C PD  T   LI+   +  ++E+   +
Sbjct: 613 PNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRV 672

Query: 237 VRTMHKDMKTALP 249
           +R M KD K  LP
Sbjct: 673 LREM-KD-KGCLP 683



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/210 (18%), Positives = 94/210 (44%), Gaps = 8/210 (3%)

Query: 42   HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
            + PNLF +  +  ++        A  +   M + G  P + S+  ++    K   V +  
Sbjct: 1084 YVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGV 1143

Query: 95   GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
             ++ QM  +   PD    N++++   +  + +   E+   +++     ++ TYN L++  
Sbjct: 1144 LLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 1203

Query: 155  GRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             +    ++ E L + +  K+   PD++T+ + +    + K   R  ++F +M+  G  PD
Sbjct: 1204 CKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPD 1263

Query: 214  GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
              T  ++IS+      +++   ++  M K+
Sbjct: 1264 DVTYSIVISSLCKWRFMDEANNVLELMLKN 1293



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/156 (17%), Positives = 68/156 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M   G  P   ++  ++  + +  ++ +   V+  M ++G  PD    +++++
Sbjct: 354 AVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIIS 413

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+  +  ++L  M +     D++  + LI+   +   I+  + L +        P
Sbjct: 414 GFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAP 473

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           DVV ++  + A  + K         + M+   CYPD
Sbjct: 474 DVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPD 509



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 8/148 (5%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            DA  VFE M +  +   + S ML +  + K    A   G+   M   G++PD     S+L
Sbjct: 1474 DARKVFEGMDQRNVV--LWSAMLGVYVFHKQEEQAF--GLWRVMGLEGVEPDAVTFLSLL 1529

Query: 117  NLYGRLGQFEK-MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
             +    G  +  ++E ++          +  ++ +I++ GR G + + E L   +P K  
Sbjct: 1530 TMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDLMLGMPCK-- 1587

Query: 176  KPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
             P   TW   L+AY     + R L + E
Sbjct: 1588 -PSAATWNCLLSAYKICGDFERALRVAE 1614



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 1/139 (0%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G + + F  N +LN+  +  Q+ +  ++  +  +G +  D  TY+ LI+ + R G I 
Sbjct: 119 RDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKIL 178

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
               LF  +  K LK       S L            +  F EM    C PD  T   +I
Sbjct: 179 PAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMI 237

Query: 222 SACSSEDQIEQVTTLVRTM 240
           +  S  D+++    L+  M
Sbjct: 238 NGLSKSDRLDDAIRLLEEM 256



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 47/115 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+EM   G  P + ++  L+    K   V +   ++  M K    PD+     ++N
Sbjct: 599 AFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLIN 658

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
                 + E+   VL  M+      D  TY  L+    +   +E +E L + + A
Sbjct: 659 GLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEA 713



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 3/140 (2%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G   DT+  N +L    RL + +   +V     K   + ++ T+ ILI+   R G I 
Sbjct: 837 QEGYNHDTYTCNCLLQALLRLKRPKDALQVYR--NKLCCSPNMFTFTILIHGLCRAGDIG 894

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVL 220
               L + +P   +  +V+     +      +     LE+F+EM ++G C PD  T   +
Sbjct: 895 TAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTI 954

Query: 221 ISACSSEDQIEQVTTLVRTM 240
           + +     +++    LV  M
Sbjct: 955 VDSLVKSGKVDDACRLVEDM 974


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 89/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++ +++K  G++P++ ++ +L+  YSK GN      +  +M   G+ P       +++
Sbjct: 356 ASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLID 415

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y RL + EK  ++ ++MEK     D+  Y +LI+     G +++   LF+S+    ++P
Sbjct: 416 AYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEP 475

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             V + + +  Y ++    R L +  EM   G  P+  +   +I     + + E+   L+
Sbjct: 476 SDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLL 535

Query: 238 RTM 240
             M
Sbjct: 536 DKM 538



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 88/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM+  G+   + ++  L+    +   V + E +++QM K+ + P+    N+++ 
Sbjct: 286 AFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIG 345

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  +G  +K   +L  ++    +  + TYNILI  Y + G  + +  L + +  + + P
Sbjct: 346 GFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISP 405

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             VT T  + AY R +   +  +I+  M   G  PD     VLI     +  +++ + L 
Sbjct: 406 SKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLF 465

Query: 238 RTM 240
           R+M
Sbjct: 466 RSM 468



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 90/186 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   +FE+MK  G+ P + ++  L+  Y   G + +   + ++M + G++ +    N+++
Sbjct: 250 DGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLI 309

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  +  + E+++  M+K + + ++ TYN LI  +   G ++K   L   L +  L 
Sbjct: 310 GGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLS 369

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P +VT+   +  YS+   ++   ++  EM   G  P   T  VLI A     ++E+   +
Sbjct: 370 PSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQI 429

Query: 237 VRTMHK 242
             +M K
Sbjct: 430 YSSMEK 435



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 6/215 (2%)

Query: 44  PNLF-----VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           PN+F       + S  F  A   F E+K   +   + S  +++    + GN+ K   ++ 
Sbjct: 128 PNIFNSLLGSLVRSNCFEKAWLFFNELKE-RVKFDVYSFGIMIKGCCENGNLDKSFQLLG 186

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +   GL P+  +  ++++   + G  E+       M +    A+  T+ +LIN   + G
Sbjct: 187 LLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKG 246

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             +    LF+ +    L P++ T+   +  Y  +    R  ++F+EM + G   +  T  
Sbjct: 247 LKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYN 306

Query: 219 VLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            LI     E+++ +   LV  M K   +   I +N
Sbjct: 307 TLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYN 341



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/205 (18%), Positives = 92/205 (44%), Gaps = 8/205 (3%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           ++ +G++P +  +  L+    K G++ +     ++M + GL  + +    ++N   + G 
Sbjct: 188 LQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGL 247

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +   ++   M+      ++ TYN L+N Y   G I +   LF  +  + ++ +VVT+ +
Sbjct: 248 KKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNT 307

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
            +    R++      ++ ++M  A   P+  T   LI        +++ ++L+  +  + 
Sbjct: 308 LIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNG 367

Query: 245 KTALPIYFNLYGE--------KGVA 261
            +   + +N+  E        KGVA
Sbjct: 368 LSPSLVTYNILIEGYSKAGNWKGVA 392



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 72/160 (45%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  GI+P+  +  +L+ AY +   + K   + + M K GL PD +V   +++     G
Sbjct: 397 EMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKG 456

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             ++  ++  +M +         YN +I+ Y +     +   L + + AK L P+V +++
Sbjct: 457 NMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYS 516

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           S +    +   +     + ++MI+    P      ++  A
Sbjct: 517 SIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMISKA 556



 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 26/139 (18%), Positives = 65/139 (46%), Gaps = 2/139 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++  M++ G+ P +  + +L+      GN+ +   +   M +  ++P   + N+M++
Sbjct: 426 AFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIH 485

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +     +   +L  ME      ++++Y+ +I +  + G  E+ E L   +   +LKP
Sbjct: 486 GYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKP 545

Query: 178 --DVVTWTSRLAAYSRKKL 194
              ++   S+   ++  K+
Sbjct: 546 SASILNMISKAKNFTELKI 564


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 4/154 (2%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++L AY + GN+++   +  QM   GL P+ +   S+L     LG  +  E++ T + K 
Sbjct: 385 VMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS 444

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            +  ++   ++LI++Y + G ++   G+ Q L     + DVV+WT+ +A Y++  L+   
Sbjct: 445 GFQFNVYVCSVLIDMYAKHGELDTARGILQRLR----EEDVVSWTAMIAGYTQHDLFAEA 500

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           L++F+EM + G   D       ISAC+    + Q
Sbjct: 501 LKLFQEMENQGIRSDNIGFSSAISACAGIQALNQ 534



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFE   RL +  ++ S + +++  S+ G   +   +  QMHKS + P  +V +S+L+
Sbjct: 166 AKLVFE---RLFLKDSV-SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLS 221

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++  F+  E++   + K   +++    N L+ +Y R G +   E +F    +K  + 
Sbjct: 222 ACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIF----SKMHRR 277

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           D +++ S ++  +++    R L++FE+M      PD  T   L+SAC+S
Sbjct: 278 DRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACAS 326



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M +  + PT      +L+A +K       E +   + K GL  +TFV N+++
Sbjct: 196 EAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALV 255

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            LY R G     E++ + M +     D  +YN LI+   + GF ++   LF+ +    +K
Sbjct: 256 TLYSRWGNLIAAEQIFSKMHR----RDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311

Query: 177 PDVVTWTSRLAA 188
           PD VT  S L+A
Sbjct: 312 PDCVTVASLLSA 323



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++  Y++    A+   +  +M   G++ D    +S ++    +    + +++        
Sbjct: 487 MIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISG 546

Query: 140 YAADIS-----TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           Y+ D+S       N+LI +Y + G IE  +  F  +P K    +VV+W + +  YS+   
Sbjct: 547 YSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEK----NVVSWNAMITGYSQHGY 602

Query: 195 YRRCLEIFEEMIDAGCY-------------PDGGTAKVLISACSSEDQIE 231
               + +FEEM   G               PD    + L+SAC+    IE
Sbjct: 603 GSEAVSLFEEMKQLGLMPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNIE 652



 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 38/192 (19%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHK----------SGL---------------------KPD 108
           L+T YS+ GN+   E + ++MH+          SGL                     KPD
Sbjct: 254 LVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPD 313

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
              + S+L+    +G   K +++ + + K   ++D+     L+++Y +   IE     F 
Sbjct: 314 CVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFL 373

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS-- 226
           +   +    +VV W   L AY +         IF +M   G  P+  T   ++  C+S  
Sbjct: 374 TTETE----NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429

Query: 227 -EDQIEQVTTLV 237
             D  EQ+ T V
Sbjct: 430 ALDLGEQIHTQV 441



 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           LI+IY   G ++    LF  +P+     +V  W   ++    KKL  + L +F  MI   
Sbjct: 51  LIDIYLAHGEVDNAIKLFDDIPS----SNVSFWNKVISGLLAKKLASQVLGLFSLMITEN 106

Query: 210 CYPDGGTAKVLISACSSEDQIEQVT 234
             PD  T   ++ ACS      QVT
Sbjct: 107 VTPDESTFASVLRACSGGKAPFQVT 131


>gi|297805650|ref|XP_002870709.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316545|gb|EFH46968.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 608

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 77/148 (52%)

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           C  V N M + G+ P+T+  N + N++     + ++++ L  ME+  +  D+ TYN L++
Sbjct: 218 CWQVYNVMCRVGIHPNTYTFNILTNVFCNNSNYGEVDDFLEKMEEEGFEPDLVTYNTLVS 277

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            Y R G +++   L++ +  +R+ PD+VT+TS +    +    R   + F  M+D G  P
Sbjct: 278 SYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKP 337

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           D  +   LI A   E  ++Q   L+  M
Sbjct: 338 DCMSYNTLIYAYCKEGMMQQSKKLLHEM 365



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 90/194 (46%), Gaps = 1/194 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   V+  M R+GI P   +  +L   +    N  + +  + +M + G +PD    N+++
Sbjct: 217 DCWQVYNVMCRVGIHPNTYTFNILTNVFCNNSNYGEVDDFLEKMEEEGFEPDLVTYNTLV 276

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G+ ++   +   M +     D+ TY  LI    + G + +    F  +  + +K
Sbjct: 277 SSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIK 336

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD +++ + + AY ++ + ++  ++  EM+     PD  T KV++     E ++      
Sbjct: 337 PDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLAAVNF 396

Query: 237 VRTMHKDMKTALPI 250
           V  + + +K  +PI
Sbjct: 397 VVELRR-LKVIIPI 409



 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/145 (18%), Positives = 62/145 (42%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF  +  + +     E+M+  G  P + ++  L+++Y + G + +   +   M++  + P
Sbjct: 243 VFCNNSNYGEVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVP 302

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D     S++    + G+  +  +    M       D  +YN LI  Y + G +++ + L 
Sbjct: 303 DLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLL 362

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRK 192
             +    + PD  T    +  + R+
Sbjct: 363 HEMLGNSVVPDRFTCKVIVEGFVRE 387



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
           +K++  L+    + G   + E ++ +M  S +KPD+ +  +++N Y +   F+K E +L+
Sbjct: 480 VKTYRALIGCLCRIGRNREAESLMAEMLDSEVKPDSIICGALVNRYCKELDFDKAESLLS 539

Query: 134 AMEKGSYAADISTYNILINIYGRGG 158
                    D  +YN L+N     G
Sbjct: 540 FFAMEFRIFDTLSYNSLVNALCETG 564


>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 426

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 91/187 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A ++  EM+  G+TP   S+  LLT Y +     +   V  +M +     D    N 
Sbjct: 95  FREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNI 154

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG      +   LF+ +  K 
Sbjct: 155 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 214

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T   +IS  S   ++++  
Sbjct: 215 IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAA 274

Query: 235 TLVRTMH 241
            L + + 
Sbjct: 275 MLFQKLR 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 94/188 (50%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ +S+     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+ + G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY +  L      +  E+      P      +L+ A     +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYEKAGLVAHAKRLLHELKRPDNIPRDIAIHILVGA----GRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  DI  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ +SK G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y + G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYEKAGLVAHAKRLLHELKR----PDNIPRDIAIHILVGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            D+  +   +  +S+ K Y   +E+F++M   G +PD     ++++A
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALILNA 399


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 89/186 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  ++ EM   GI+P + ++  L+  +   G++ +   ++N+M    + PD    N+
Sbjct: 219 LGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNT 278

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G+ G+ +  + VL  M K     D+ TYN LI+ Y     ++  + +F S+    
Sbjct: 279 LIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSG 338

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+V T+T+ +    ++K+    + +FEEM      PD  T   LI        +E+  
Sbjct: 339 VTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAI 398

Query: 235 TLVRTM 240
            L + M
Sbjct: 399 ALCKKM 404



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 7/211 (3%)

Query: 43  TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N  V+ F I  +  +A ++  EMK   I P + +   L+ A  K G +   + V+  M
Sbjct: 240 TYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVM 299

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
            K+ +KPD    NS+++ Y  L + +  + V  +M +     ++ TY  +I+   +   +
Sbjct: 300 MKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMV 359

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++   LF+ +  K + PD+VT+TS +    +     R + + ++M + G  PD  +  +L
Sbjct: 360 DEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTIL 419

Query: 221 ISACSSEDQIEQVTT-----LVRTMHKDMKT 246
           + A     ++E         LV+  H +++T
Sbjct: 420 LDALCKGGRLENAKEFFQRLLVKGYHLNVQT 450



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 87/183 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M ++G+TP ++ + +++    K   V +   +  +M    + P+     S+++
Sbjct: 560 AKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLID 619

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +    E+   +L  M++     D+ +Y IL++   + G +E  + +FQ L  K    
Sbjct: 620 ALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHL 679

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V  +T+ +    +  L+   L++  +M D GC PD  T  ++I A   +D+ ++   ++
Sbjct: 680 NVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKIL 739

Query: 238 RTM 240
             M
Sbjct: 740 XEM 742



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF  M + G+TP ++++  ++    K   V +   +  +M    + PD     S++
Sbjct: 326 NAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLI 385

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +    E+   +   M++     D+ +Y IL++   +GG +E  +  FQ L  K   
Sbjct: 386 DGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYH 445

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +V T+   +    +  L+   +++  +M   GC PD  T K +I A   +D+ ++   +
Sbjct: 446 LNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKI 505

Query: 237 VRTM 240
           +R M
Sbjct: 506 LREM 509



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A ++FEEMK   + P + ++  L+    K  ++ +   +  +M + G++PD +    +
Sbjct: 360 DEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTIL 419

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   + G+ E  +E    +    Y  ++ TYN++IN   +     +   L   +  K  
Sbjct: 420 LDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGC 479

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            PD +T+ + + A   K    +  +I  EMI  G
Sbjct: 480 MPDAITFKTIICALFEKDENDKAEKILREMIARG 513



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 72/154 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A ++FEEMK   + P + ++  L+ A  K  ++ +   ++ +M + G++PD +    +
Sbjct: 593 DEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTIL 652

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   + G+ E  +E+   +    Y  ++  Y  +IN   + G  ++   L   +  K  
Sbjct: 653 LDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGC 712

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            PD VT+   + A   K    +  +I  EMI  G
Sbjct: 713 MPDAVTFDIIIWALFEKDENDKAEKILXEMIARG 746



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 67/136 (49%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V+  M K+ +KPD     ++++ Y  + + +  + V  +M +     ++  Y I+I+   
Sbjct: 528 VLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLC 587

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   +++   LF+ +  K + P++VT+TS + A  +     R + + +EM + G  PD  
Sbjct: 588 KKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVY 647

Query: 216 TAKVLISACSSEDQIE 231
           +  +L+       ++E
Sbjct: 648 SYTILLDGLCKSGRLE 663



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 1/158 (0%)

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
           ++M   G+ P+    N+++  +  +G  ++   +L  M+  +   D+ T+N LI+  G+ 
Sbjct: 227 SEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKE 286

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G ++  + +   +    +KPDVVT+ S +  Y      +    +F  M  +G  P+  T 
Sbjct: 287 GKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTY 346

Query: 218 KVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNL 254
             +I     E  +++  +L   M +K+M   +  Y +L
Sbjct: 347 TTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSL 384



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 12/186 (6%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +  +M+  G  P   +   ++ A  +     K E ++ +M   GL+        
Sbjct: 464 FGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQE------- 516

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
                 R  + ++ + VL  M K     D+ TY  L++ Y     ++  + +F S+    
Sbjct: 517 -----ARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMG 571

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+V  +T  +    +KK     + +FEEM     +P+  T   LI A      +E+  
Sbjct: 572 VTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAI 631

Query: 235 TLVRTM 240
            L++ M
Sbjct: 632 ALLKEM 637



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 2/198 (1%)

Query: 45  NLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           N F  +  I F  A +V   + + G  P   +   L+      G + K     +Q+   G
Sbjct: 106 NCFCHLTHITF--AFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQG 163

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            + +     +++N   + G+ + +  +L  +E  S   D+  YN +I+   +   +    
Sbjct: 164 FQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDAC 223

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            L+  +  K + P+VVT+ + +  +      +    +  EM      PD  T   LI A 
Sbjct: 224 DLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDAL 283

Query: 225 SSEDQIEQVTTLVRTMHK 242
             E +++    ++  M K
Sbjct: 284 GKEGKMKAAKIVLAVMMK 301


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 90/187 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +   MK  G+ P +  +   ++A  K G       ++ +M   GL PD    ++
Sbjct: 237 WKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYST 296

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + GQ+E    +L  M      A+I TY+I+I    + G  E+   L + +    
Sbjct: 297 VIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENG 356

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDV+T++S ++A ++K  +   + +  EM   G  P+  +  ++ISAC+   +  +  
Sbjct: 357 VAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAI 416

Query: 235 TLVRTMH 241
            L++ M 
Sbjct: 417 DLLQEMQ 423



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 103/217 (47%), Gaps = 7/217 (3%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+ V+  +I        +  A  + +EM  +G+ P + ++  ++ A +K G       +
Sbjct: 254 PNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRL 313

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M   G+  +    + ++    + GQ+E+   +L  M++   A D+ TY+  I+   +
Sbjct: 314 LMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAK 373

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  E+  GL + +P + + P+ +++   ++A +++  +R  +++ +EM   G  PD   
Sbjct: 374 KGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVIN 433

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
               I AC+   + EQ   L+R M     T   I +N
Sbjct: 434 YSAAIDACAQASRWEQALWLLREMPATGLTPNVISYN 470



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 89/186 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +  EM   G+TP + S+   + A +KTG       ++ +M   GL PD    ++
Sbjct: 447 WEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSA 506

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++       Q+E+  ++   M++     D+ + N  IN   +GG+ E+   +   +P   
Sbjct: 507 VIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMG 566

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PD +++ + + A ++   ++  +++  EM   G  PD  + +  +SACS +   ++  
Sbjct: 567 LVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEAL 626

Query: 235 TLVRTM 240
            L+R M
Sbjct: 627 VLLRDM 632



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 92/188 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A A+  EM+  G+ P + ++   ++A +K G   +  G++ +M   G+ P+      
Sbjct: 342 WEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGI 401

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G++ +  ++L  M+      D+  Y+  I+   +    E+   L + +PA  
Sbjct: 402 VISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATG 461

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+V+++ S + A ++    +  +E+  EM   G  PD  T   +I++C+   Q E+  
Sbjct: 462 LTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEAL 521

Query: 235 TLVRTMHK 242
            L R M +
Sbjct: 522 DLFREMQR 529



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 91/186 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +  EM   G+TP   S+ ++++A +K G   +   ++ +M   G+ PD    ++
Sbjct: 377 WEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSA 436

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   +  ++E+   +L  M       ++ +YN  I+   + G  +    L + +PA  
Sbjct: 437 AIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHG 496

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L PDV+T+++ +A+ +  + +   L++F EM   G  PD  +    I+AC+     E+  
Sbjct: 497 LAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEAL 556

Query: 235 TLVRTM 240
            ++  M
Sbjct: 557 DVLGEM 562



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 7/205 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN   +   I        + +A  + +EM+  G+ P + ++   + A ++     +   
Sbjct: 393 TPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALW 452

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M  +GL P+    NS ++   + G+ +   E+L  M     A D+ TY+ +I    
Sbjct: 453 LLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCA 512

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
            G   E+   LF+ +  + + PDVV+  + + A ++   +   L++  EM   G  PD  
Sbjct: 513 MGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAI 572

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           + +  I AC+  D+ +++  L+R M
Sbjct: 573 SYRTAIDACAKGDRWKEIIDLLREM 597



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 92/200 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +   M   G  P + ++   + A +K     +  G++  M   G+KP+  V ++
Sbjct: 202 WERAVELLASMAARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSA 261

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   + GQ+E   ++L  M     A D+ TY+ +I+   + G  E    L   +P K 
Sbjct: 262 AISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKG 321

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +  +++T++  + A ++   +   + +  EM + G  PD  T    ISAC+ + Q E+  
Sbjct: 322 VVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAV 381

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            L+R M  +  T   I + +
Sbjct: 382 GLLREMPMEGVTPNAISYGI 401



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 77/153 (50%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G+  K   V+++M + G+KPD+   +S +   G   Q+E+  E+L +M       D+ TY
Sbjct: 165 GDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTY 224

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           +  I    +    ++  GL +S+  + +KP+V+ +++ ++A  +   +   +++ +EM  
Sbjct: 225 SSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPA 284

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            G  PD  T   +I AC+   Q E    L+  M
Sbjct: 285 VGLAPDVITYSTVIDACAKRGQWEPAFRLLMEM 317



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 84/183 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V + M+  G+ P  +++   + A        +   ++  M   G  PD    +S +    
Sbjct: 173 VLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACA 232

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           ++ ++++   +L +M+      ++  Y+  I+   +GG  E    L + +PA  L PDV+
Sbjct: 233 KVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVI 292

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+++ + A +++  +     +  EM   G   +  T  ++I AC+   Q E+   L+R M
Sbjct: 293 TYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREM 352

Query: 241 HKD 243
            ++
Sbjct: 353 QEN 355



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 13/208 (6%)

Query: 43  TPNLFVFIFSIYFSDAHA----------VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           TPN+  +  +I   DA A          +  EM   G+ P + ++  ++ + +      +
Sbjct: 463 TPNVISYNSAI---DACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEE 519

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
              +  +M + G+ PD    N+ +N   + G +E+  +VL  M       D  +Y   I+
Sbjct: 520 ALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAID 579

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              +G   +++  L + +    L PD +++   ++A S   L++  L +  +M+  G  P
Sbjct: 580 ACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSP 639

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           D  T    I+AC+   + ++ T L+R M
Sbjct: 640 DVVTYNSAINACAKGGRWKEATVLLRQM 667



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 87/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +  EM   G+   + ++ +++ A +K G   +   ++ +M ++G+ PD    +S
Sbjct: 307 WEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSS 366

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   + GQ+E+   +L  M       +  +Y I+I+   + G   +   L Q + A  
Sbjct: 367 TISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHG 426

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDV+ +++ + A ++   + + L +  EM   G  P+  +    I AC+   + +   
Sbjct: 427 VPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAV 486

Query: 235 TLVRTM 240
            L+R M
Sbjct: 487 ELLREM 492



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 81/175 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +F EM+R GITP + S    + A ++ G   +   V+ +M   GL PD     +
Sbjct: 517 WEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRT 576

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   +  +++++ ++L  M       D  +Y   ++     G  ++   L + + A  
Sbjct: 577 AIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVG 636

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           L PDVVT+ S + A ++   ++    +  +M   G  PD  +    I AC + DQ
Sbjct: 637 LSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGDQ 691



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 74/171 (43%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++ +A  V  EM  +G+ P   S+   + A +K     +   ++ +M   GL PD     
Sbjct: 551 WWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYR 610

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
             ++     G +++   +L  M     + D+ TYN  IN   +GG  ++   L + +P  
Sbjct: 611 FAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTF 670

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            L PDV ++ + + A      +   +E+  EM   G  P+  T    + AC
Sbjct: 671 GLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYAC 721


>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 458

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 83/159 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F++M    I P + +   L+ A+ K G + + + V+N M +  LK D    +S
Sbjct: 223 LEEALGLFKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSS 282

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y  + +  K + +   M +   + D+ +YNI+IN + +   +++   LF+ +P K+
Sbjct: 283 LMNGYCLVNEVFKAQSIFKTMAERELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQ 342

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + PDVVT+ + +    +       +E+ +EM D G  P+
Sbjct: 343 IFPDVVTYHTLIDGLCKSGRLSYAMELVDEMDDRGEPPN 381



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 90/187 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + +DA  ++ EM   GI+P + ++  L+  +   G + +  G+  +M    + P+ +  N
Sbjct: 187 FVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFN 246

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ + + G+ E+ + VL  M +    +D+  Y+ L+N Y     + K + +F+++  +
Sbjct: 247 GLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAER 306

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L  DV ++   +  + + K+    +++FEEM     +PD  T   LI       ++   
Sbjct: 307 ELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDGLCKSGRLSYA 366

Query: 234 TTLVRTM 240
             LV  M
Sbjct: 367 MELVDEM 373



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           + ++  D+  Y  +I+   +  F+     L+  + A  + P+VVT+T+ +  +       
Sbjct: 165 RQAFEPDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLE 224

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT-MHKDMKTALPIYFNL 254
             L +F++MI     P+  T   L+ A   E +IE+   ++ T M KD+K+ +  Y +L
Sbjct: 225 EALGLFKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSL 283


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 92/196 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   G  P + ++ +L+    K G + +    +N M   G +P+    N +L 
Sbjct: 35  AMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILR 94

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++   E++LT M +   +  + T+NILIN   R G + +   + + +P     P
Sbjct: 95  SMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTP 154

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +++   L  + ++K   R ++  E M+  GCYPD  T   +++A   + +++    L+
Sbjct: 155 NSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELL 214

Query: 238 RTMHKDMKTALPIYFN 253
             +     + + I +N
Sbjct: 215 NQLSSKGCSPVLITYN 230



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 2/212 (0%)

Query: 29  PSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG 88
           P+H    N L   + P L  F        A    E M   G  P + ++  +LTA  K G
Sbjct: 148 PTHGCTPNSL--SYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDG 205

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
            V     ++NQ+   G  P     N++++   ++G+ ++  E+L  M       D+ TY+
Sbjct: 206 KVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYS 265

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            LI    R G +E+    F  +    +KP+  T+ S +    + +   R ++    MI  
Sbjct: 266 SLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISK 325

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           GC P   +  +LI   ++E   ++   L+  +
Sbjct: 326 GCKPTEVSYTILIEGIANEGLAKEALELLNEL 357



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 10/233 (4%)

Query: 43  TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++  F   I F         A  + E+M   G TP   S+  LL  + K   + +   
Sbjct: 118 SPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQ 177

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            +  M   G  PD    N+ML    + G+ +   E+L  +     +  + TYN +I+   
Sbjct: 178 YLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 237

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  ++   L   +  K LKPDV+T++S +A  SR+      ++ F ++   G  P+  
Sbjct: 238 KVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAF 297

Query: 216 T-AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
           T   ++   C ++     +  L   + K  K     Y  L   +G+A   L +
Sbjct: 298 TYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILI--EGIANEGLAK 348



 Score = 37.4 bits (85), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           ME L + L  K   PDV+T+T  + A   +    + +++ +EM   GC PD  T  VL++
Sbjct: 1   MEVLDRQL-EKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVN 59

Query: 223 ACSSEDQIEQVTTLVRTM 240
               E ++++    + +M
Sbjct: 60  GMCKEGRLDEAIKFLNSM 77


>gi|219363531|ref|NP_001137052.1| uncharacterized protein LOC100217224 [Zea mays]
 gi|194698168|gb|ACF83168.1| unknown [Zea mays]
          Length = 338

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 86/178 (48%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           E M+R G+ P   ++  ++    K G + +   ++N+M   G+ P+T   N++++ Y  L
Sbjct: 105 ERMEREGLVPNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVTPNTITFNTLIHSYVTL 164

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  E   ++   M K   +AD+ TYN LI      G   K   L Q L A +L+P+  T+
Sbjct: 165 GDNEVAMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQLVQELCAAKLEPNASTF 224

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ +    +K+   R L++   M  AG  P+  T  +LIS  S     E    +++ M
Sbjct: 225 SALIIGQCKKQNPERALDLLNAMKKAGFQPNYYTYSILISTFSKNKDFEGAIDVLKDM 282



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A + F EM+R  ++P + +  +++ A    G V     ++++M   G        N+++ 
Sbjct: 29  AISFFREMRRCRVSPNVYTVNMVMRAKCALGRVVDAAQLLDEMPCWGFSRTAASFNTLIA 88

Query: 118 LYGR-LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            Y    G  E +  +   ME+     +  TYN +++   + G + +   +   +  K + 
Sbjct: 89  AYCHDSGGMETVLRLKERMEREGLVPNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVT 148

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ +T+ + + +Y         +++ EEM+ AG   D  T   LI    +E +  + + L
Sbjct: 149 PNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQL 208

Query: 237 VRTM 240
           V+ +
Sbjct: 209 VQEL 212



 Score = 40.4 bits (93), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/143 (20%), Positives = 65/143 (45%), Gaps = 7/143 (4%)

Query: 43  TPNLFVFIFSIY----FSD---AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN   F   I+      D   A  + EEM + G++  + ++  L+      G   K   
Sbjct: 148 TPNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQ 207

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ ++  + L+P+    ++++    +    E+  ++L AM+K  +  +  TY+ILI+ + 
Sbjct: 208 LVQELCAAKLEPNASTFSALIIGQCKKQNPERALDLLNAMKKAGFQPNYYTYSILISTFS 267

Query: 156 RGGFIEKMEGLFQSLPAKRLKPD 178
           +    E    + + +  + + PD
Sbjct: 268 KNKDFEGAIDVLKDMLMRCIAPD 290


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 1/188 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  V E M+   + P  +++  L+  Y K  NV K  GV+N+M +  + PD    NS
Sbjct: 409 IEDALDVVELMESRNLRPNTRTYNELIKGYCKR-NVHKAMGVLNKMLERKVLPDVVTYNS 467

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R G F+    +L+ M       D  TY  +I+   +   +E+   LF SL  K 
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKD 527

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+VV +T+ +  Y +         + E+M+   C P+  T   LI    ++ ++++ T
Sbjct: 528 VIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEAT 587

Query: 235 TLVRTMHK 242
            L   M K
Sbjct: 588 LLEEKMVK 595



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 85/173 (49%), Gaps = 2/173 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F +MK     PT++++ +L+ A   +   ++   ++ +M + G+KP+      
Sbjct: 304 IDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTV 363

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++      + EK  E+L  M +     ++ TYN LIN Y + G IE    + + + ++ 
Sbjct: 364 LIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRN 423

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSS 226
           L+P+  T+   +  Y ++ ++ + + +  +M++    PD  T   LI   C S
Sbjct: 424 LRPNTRTYNELIKGYCKRNVH-KAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 1/173 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           LL + ++ G V + + V  +M +  + P+ +  N M+N Y ++G  E+  + ++ + +  
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAG 248

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TY  LI  Y +   ++    +F+ +P K  + + V +T  +     ++     +
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAM 308

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVRTMHKDMKTALPIY 251
           ++F +M D  CYP   T  VLI A C SE + E +  +     K +K  +  Y
Sbjct: 309 DLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTY 361



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N++LN   R G  ++M++V   M +     +I TYN ++N Y + G +E+       +  
Sbjct: 187 NTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVE 246

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             L PD  T+TS +  Y ++K      ++F+EM   GC  +      LI     E +I++
Sbjct: 247 AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDE 306

Query: 233 VTTLVRTMHKD 243
              L   M  D
Sbjct: 307 AMDLFVKMKDD 317



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 1/181 (0%)

Query: 44  PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-K 102
           P + V    + F     + E+M   G+TP  KS+  L+    + GN+   E V + M  K
Sbjct: 730 PGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQK 789

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            G+ P   V N++L+   +L +  +  +V+  M    +   + +  ILI    + G  E+
Sbjct: 790 EGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKER 849

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
              +FQ+L       D + W   +    ++ L     E+F  M   GC     T  +LI 
Sbjct: 850 GTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIE 909

Query: 223 A 223
            
Sbjct: 910 G 910



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 81/185 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+ +++  + P +  +  L+  Y K G V +   ++ +M      P++   N+++
Sbjct: 515 EACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALI 574

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +     G+ ++   +   M K      +ST  ILI+   + G  +     FQ + +   K
Sbjct: 575 HGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTK 634

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD  T+T+ +  Y R+   +   ++  +M + G  PD  T   LI       +      +
Sbjct: 635 PDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVV 694

Query: 237 VRTMH 241
           ++ MH
Sbjct: 695 LKRMH 699



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 2/181 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ EM    + P + ++  ++  Y K GNV +    ++ + ++GL PD F   S++  Y 
Sbjct: 205 VYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYC 264

Query: 121 RLGQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           +    +   +V   M  KG    +++ Y  LI+       I++   LF  +      P V
Sbjct: 265 QRKDLDSAFKVFKEMPLKGCRRNEVA-YTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTV 323

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+T  + A    +     L + +EM + G  P+  T  VLI +  S+ ++E+   L+  
Sbjct: 324 RTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQ 383

Query: 240 M 240
           M
Sbjct: 384 M 384



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 8/170 (4%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP----DTFV 111
           ++AH + E+M      P   +   L+      G + +   +  +M K  L+P    DT +
Sbjct: 549 NEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTIL 608

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           I+ +L    + G F+        M       D  TY   I  Y R G ++  E +   + 
Sbjct: 609 IHRLL----KDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMK 664

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
              + PD+ T++S +  Y           + + M D GC P   T   LI
Sbjct: 665 ENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLI 714



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/164 (18%), Positives = 73/164 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M    + P + ++  L+    ++GN      +++ M+  GL PD +   SM++
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMID 505

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + E+  ++  ++E+     ++  Y  LI+ Y + G + +   + + + +K   P
Sbjct: 506 SLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLP 565

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + +T+ + +         +    + E+M+     P   T  +LI
Sbjct: 566 NSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILI 609



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 102/232 (43%), Gaps = 23/232 (9%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD--TFV- 111
             DA  +  +MK  G++P + ++  L+  Y   G       V+ +MH +G +P   TF+ 
Sbjct: 653 LQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLS 712

Query: 112 -INSMLNL-YGRLG-------------QFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            I  +L + YG++              +F+ + E+L  M +     +  +Y  L+     
Sbjct: 713 LIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICE 772

Query: 157 GGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
            G +   E +F  +  K  + P  + + + L+   + + +    ++ ++MI  G  P   
Sbjct: 773 IGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLE 832

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM----HKDMKTALPIYFNLYGEKGVARS 263
           + K+LI     + + E+ T++ + +    + D + A  I  +  G++G+  +
Sbjct: 833 SCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEA 884



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 40/81 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A+  F++M   G  P   ++   +  Y + G +   E ++ +M ++G+ PD F  +S
Sbjct: 618 FDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSS 677

Query: 115 MLNLYGRLGQFEKMEEVLTAM 135
           ++  YG LG+      VL  M
Sbjct: 678 LIKGYGDLGRTNSAFVVLKRM 698



 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/189 (17%), Positives = 81/189 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A+ +   M   G+ P   ++  ++ +  K+  V +   + + + +  + P+  +  +
Sbjct: 478 FDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTA 537

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y + G+  +   +L  M   +   +  T+N LI+     G +++   L + +    
Sbjct: 538 LIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKID 597

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P V T T  +    +   +      F++M+ +G  PD  T    I     E +++   
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAE 657

Query: 235 TLVRTMHKD 243
            +V  M ++
Sbjct: 658 DMVAKMKEN 666


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 25/243 (10%)

Query: 5   QCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIY-------FSD 57
           Q     L    R+P +     LP  S  +  + + L+  PN + F   ++        +D
Sbjct: 172 QAANAVLSALSRSPST-----LPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLAD 226

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A    M+  G++P   ++  LL A+ + G + +   ++ +M + G+ P     N++++
Sbjct: 227 ALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVS 286

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI-------EKMEGLFQSL 170
            + RLG  ++  +V+ +M    +  D+ TYN+L     + G +       ++ME L  +L
Sbjct: 287 AFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTAL 346

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
                 PDVVT+ + + A  + +     L + EEM D G  P   T  +++ +   E ++
Sbjct: 347 ------PDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKL 400

Query: 231 EQV 233
           E+ 
Sbjct: 401 EEA 403



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 89/179 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A    E++   G+ P + ++  L+ AY K GNVAK   ++++M   GLK DTF +N+
Sbjct: 400 LEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNT 459

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    ++ ++E  EE+L +  +  +  D  +Y  ++  Y +    E    L+  +  ++
Sbjct: 460 VLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERK 519

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           L P + T+ + +    R +  +  ++   E+++ G  PD  T  ++I A   E  +E  
Sbjct: 520 LIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENA 578



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 90/196 (45%), Gaps = 5/196 (2%)

Query: 50  IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + + YF +     A  ++++M    + P++ ++  L+    +   + +    +N++ + G
Sbjct: 495 VMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKG 554

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           L PD    N +++ Y + G  E        M + S+  D+ T N L+N     G ++K  
Sbjct: 555 LVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKAL 614

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            LF+S   K  K DV+T+ + + +  +       L  F++M   G  PD  T  V++SA 
Sbjct: 615 KLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSAL 674

Query: 225 SSEDQIEQVTTLVRTM 240
           S   + E+   ++  +
Sbjct: 675 SEAGRSEEAHNMLHKL 690



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 6/174 (3%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN---L 118
             E+   G+ P   ++ +++ AY K G++       N+M ++  KPD    N+++N   L
Sbjct: 547 LNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCL 606

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           +G+L +  K+ E  + +EKG    D+ TYN LI    + G ++     F  +  K L+PD
Sbjct: 607 HGKLDKALKLFE--SWVEKGK-KVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPD 663

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             T+   L+A S          +  ++ D+G         +L  + + E  +++
Sbjct: 664 AFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKE 717



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 3/186 (1%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNV--AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +R G+ P++++   +L+A S++ +        V   + +  L P+ +  N +++ +   G
Sbjct: 163 RRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKG 222

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
                   L+ M+    + D  TYN L+N + R G + +   L   +    + P   T+ 
Sbjct: 223 TLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYN 282

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + ++A++R    ++  ++ E M   G  PD  T  VL        ++++   L   M + 
Sbjct: 283 TLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMER- 341

Query: 244 MKTALP 249
           + TALP
Sbjct: 342 LSTALP 347



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 1/175 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +     + G  P   S+  ++ AY K  N      + +QM +  L P     N+
Sbjct: 470 YEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    R+ + ++  + L  + +     D +TYNI+I+ Y + G +E        +    
Sbjct: 530 LIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENS 589

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSSED 228
            KPDVVT  + +          + L++FE  ++ G   D  T   LI S C   D
Sbjct: 590 FKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGD 644


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 93/176 (52%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P ++++ +L++     G   + E +  +M   G+ P+T   +SM+N   +  + ++ 
Sbjct: 500 GVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEA 559

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            ++  +M   S++ D+ T+N L++ Y + G ++    LF  +  + +  D +T+ + +  
Sbjct: 560 TQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHG 619

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
           + +       L+IF+EMI +G YPD  T + +++   S++++++   ++  +   M
Sbjct: 620 FRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQMSM 675



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 10/216 (4%)

Query: 44  PNLFV-------FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+LF        F  S  +S+A  + +EM    I P + ++  L+ AY K     + E +
Sbjct: 282 PDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEEL 341

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M   G+ P+T   NSM++ + +  + +  E +   M     + D+ T+N LI+ Y  
Sbjct: 342 YDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCG 401

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              I+    L   +    L  D  T+ + +  +         L++ ++MI +G  PD  T
Sbjct: 402 AKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 461

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK---DMKTALP 249
              L+       +++    + + M K   D+  + P
Sbjct: 462 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRP 497



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 80/166 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDAH ++ EM+  GI P + ++  ++  +  +G  ++ + ++ +M +  + P+    +++
Sbjct: 266 SDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSAL 325

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y +  +F + EE+   M       +  TYN +I+ + +   ++  E +F  +  K  
Sbjct: 326 INAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGC 385

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            PDV T+ + +  Y   K      E+  EM + G   D  T   LI
Sbjct: 386 SPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLI 431



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++F F   I          D   +  EM   G+     ++  L+  +   G++     
Sbjct: 386 SPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALD 445

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----------SYAADI 144
           +  QM  SG+ PD    N++L+     G+ +   E+  AM+K                D+
Sbjct: 446 LSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDV 505

Query: 145 STYNILIN-IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
            TYNILI+ +   G F+E  E L++ +P + + P+ +T++S +    ++       ++F+
Sbjct: 506 QTYNILISGLINEGKFLEA-EELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFD 564

Query: 204 EMIDAGCYPDGGTAKVLISA 223
            M      PD  T   L+S 
Sbjct: 565 SMGSKSFSPDVVTFNTLVSG 584



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 2/178 (1%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EEM    I P +  +  ++    K G  +    +  +M + G+ PD F  N M++ +   
Sbjct: 240 EEMSH--IKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSS 297

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G++ + + +L  M +     ++ TY+ LIN Y +     + E L+  +  + + P+ +T+
Sbjct: 298 GRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITY 357

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            S +  + ++        +F  M   GC PD  T   LI       +I+  T L+  M
Sbjct: 358 NSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEM 415



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 69/151 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +++EM   GI P   ++  ++    K   + +   + + M      PD    N+
Sbjct: 521 FLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNT 580

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y + G+ +   E+   M +    AD  TY  LI+ + + G I     +FQ + +  
Sbjct: 581 LVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSG 640

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           + PD +T  S L     K+  +R + + E++
Sbjct: 641 VYPDTITIRSMLTVLWSKEELKRAVAMLEDL 671



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/212 (19%), Positives = 95/212 (44%), Gaps = 40/212 (18%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +F +M R    P + +   L+    + G V +   ++++M + GL+P+     ++
Sbjct: 164 SEALDLFHQMCR----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTI 219

Query: 116 LNLYGRLGQ-------FEKMEE-----------------------------VLTAMEKGS 139
           ++   ++G          KMEE                             + T M++  
Sbjct: 220 VDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKG 279

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+ TYN +I+ +   G   + + L Q +  +++ P+VVT+++ + AY +++ +    
Sbjct: 280 IFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAE 339

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           E+++EM+  G  P+  T   +I     +++++
Sbjct: 340 ELYDEMLPRGIIPNTITYNSMIDGFCKQNRLD 371



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 46/245 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +++EM   GI P   ++  ++  + K   +   E +   M   G  PD F  N+
Sbjct: 335 FFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNT 394

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ------ 168
           +++ Y    + +   E+L  M +    AD +TYN LI+ +   G +     L Q      
Sbjct: 395 LIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSG 454

Query: 169 ----------------------------------------SLPAKRLKPDVVTWTSRLAA 188
                                                   S P   ++PDV T+   ++ 
Sbjct: 455 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISG 514

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248
              +  +    E+++EM   G  P+  T   +I+    + ++++ T +  +M     +  
Sbjct: 515 LINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPD 574

Query: 249 PIYFN 253
            + FN
Sbjct: 575 VVTFN 579



 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + + M +S   P     N ++ +  R+ + + +  +   ME+     D+ ++NILI  + 
Sbjct: 64  LFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFC 123

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
               +      F  +     +PDVVT+++ L     +      L++F +M    C P+  
Sbjct: 124 SCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVV 179

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKD 243
           T   L++    E ++ +   L+  M +D
Sbjct: 180 TFTTLMNGLCREGRVVEAVALLDRMVED 207


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 102/211 (48%), Gaps = 3/211 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM R    PT+ ++  ++ AY +   + +   V  +M ++G +PD     ++++++ 
Sbjct: 382 LLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHA 441

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  +   ++   M++   + D  TY+ ++N  G+GG +     LF  +      P++V
Sbjct: 442 KAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLV 501

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +A  ++ + Y   ++++++M  AG  PD  T  +++        +++   +   M
Sbjct: 502 TYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEM 561

Query: 241 HKDMKTALPIY---FNLYGEKGVARSNLGQY 268
            +D     P+Y    +L+G+ G     LG Y
Sbjct: 562 RRDWAPDEPVYGLLVDLWGKAGNVDKALGWY 592



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 85/168 (50%), Gaps = 1/168 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F EM   G TP + ++ +++   +K  N      +   M  +G +PD    + ++ 
Sbjct: 484 AYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVME 543

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           + G  G  ++ E V   M +  +A D   Y +L++++G+ G ++K  G +Q++    L+P
Sbjct: 544 VLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQP 602

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +V T  S L+A+ +   ++    + + M+  G  P   T  +L+S C+
Sbjct: 603 NVPTCNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLLSCCT 650



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 66/130 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  VFEEM+  G  P   ++  L+  ++K G +     +  +M + GL PDTF  +
Sbjct: 410 YLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYS 469

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M+N  G+ GQ     ++   M +     ++ TYNI+I +  +    E +  L++ +   
Sbjct: 470 AMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVA 529

Query: 174 RLKPDVVTWT 183
             +PD +T++
Sbjct: 530 GFRPDKITYS 539



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 72/153 (47%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+ + G+  QF  ++++L  M +      + TYN +I+ YGR  +++
Sbjct: 353 QPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLK 412

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F+ +     +PD VT+ + +  +++       ++++  M + G  PD  T   ++
Sbjct: 413 EAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMV 472

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           +      Q+     L   M ++  T   + +N+
Sbjct: 473 NCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNI 505



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A AVF EM+R    P    + LL+  + K GNV K  G    M + GL+P+    N
Sbjct: 550 HLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCN 608

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           S+L+ + ++ +F+    VL  M        + TY +L++
Sbjct: 609 SLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLLS 647


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 86/181 (47%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V  ++ +LG+ PT+ +   L+    K G  A+   + + M   G +PD +  N+++N  
Sbjct: 149 SVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGL 208

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++G+      +L  ME+     ++ TY+ LI+   R   + +   +F  + AK + PD+
Sbjct: 209 CKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDI 268

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+TS +    +   ++    +  EM      PD  T  VL+     E ++ +   +++T
Sbjct: 269 FTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKT 328

Query: 240 M 240
           M
Sbjct: 329 M 329



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 91/187 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M   G  P + S+ +L+  Y K   + +   + N+M   GL P+    N+++
Sbjct: 356 EARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLI 415

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + +LG+  + +++   M       D+ TY+IL++ + + G++ K   LF+++ +  LK
Sbjct: 416 HGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLK 475

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++V +T  + A  +   ++   ++F E+   G  P       +I+    E  +++    
Sbjct: 476 PNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEA 535

Query: 237 VRTMHKD 243
            R M  D
Sbjct: 536 FRNMEAD 542



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 89/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M+  G  P M ++  L+ +  +   V +   + + M   G+ PD F   S++ 
Sbjct: 217 AAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQ 276

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  ++++   +L  M   +   DI T+N+L++ + + G + +  G+ +++    ++P
Sbjct: 277 GLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEP 336

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVT++S +  YS         ++F  MI  GC P+  +  +LI+      +I++   L 
Sbjct: 337 NVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLF 396

Query: 238 RTM 240
             M
Sbjct: 397 NEM 399



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 7/206 (3%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++F +   I        + +A A+  EM  L I P + +  +L+  + K G V++  G
Sbjct: 265 SPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALG 324

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V+  M + G++P+    +S++  Y       +  ++   M       +I +YNILIN Y 
Sbjct: 325 VLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYC 384

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   I++   LF  +  + L P+ V++ + +  + +    R   ++F  M   G  PD  
Sbjct: 385 KAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLF 444

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
           T  +L+     +  + +   L R M 
Sbjct: 445 TYSILLDGFCKQGYLGKAFRLFRAMQ 470



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 88/187 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y+    ++ ++M+ +G++P + +  + +  + +   V     V+ ++ K GL+P      
Sbjct: 108 YYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFT 167

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N   ++G+F +  E+   M       D+ TYN +IN   + G      GL + +   
Sbjct: 168 TLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEA 227

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +P++VT+++ + +  R +L    L+IF  M   G  PD  T   LI       + ++ 
Sbjct: 228 GCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEA 287

Query: 234 TTLVRTM 240
           + L+  M
Sbjct: 288 SALLNEM 294



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 7/185 (3%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+F +   I          +A  +F EM   G+TP   S+  L+  + + G + + + +
Sbjct: 371 PNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDL 430

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M  +G  PD F  + +L+ + + G   K   +  AM+      ++  Y IL++   +
Sbjct: 431 FRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCK 490

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  +    LF  L  + L+P V  +T+ +    ++ L    LE F  M   GC PD  +
Sbjct: 491 SGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEIS 550

Query: 217 AKVLI 221
             V+I
Sbjct: 551 YNVII 555



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 82/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F  MK  GI+P + ++  L+    K     +   ++N+M    + PD    N +
Sbjct: 250 NEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVL 309

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+  +   VL  M +     ++ TY+ L+  Y     + +   LF  +  K  
Sbjct: 310 VDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGC 369

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP++ ++   +  Y + K     +++F EMI  G  P+  +   LI       ++ +   
Sbjct: 370 KPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQD 429

Query: 236 LVRTM 240
           L R M
Sbjct: 430 LFRNM 434



 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/157 (19%), Positives = 67/157 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M   G  P + ++ +LL  + K G + K   +   M  + LKP+  +   ++
Sbjct: 426 EAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILV 485

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G  +   ++ + +        +  Y  +IN   + G +++    F+++ A    
Sbjct: 486 HAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCP 545

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           PD +++   +    + K   R L +  EM D G   D
Sbjct: 546 PDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIAD 582



 Score = 40.4 bits (93), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 69/161 (42%), Gaps = 1/161 (0%)

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT-AMEKGSYA 141
           A S   N+       N M      P       +L+   ++GQ+  +   L+  ME    +
Sbjct: 66  ASSSFRNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLS 125

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            +I T +I +N + +   ++    +   +    L+P +VT+T+ +    +   + + +E+
Sbjct: 126 PNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVEL 185

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           F++M+  GC PD  T   +I+      +      L++ M +
Sbjct: 186 FDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEE 226


>gi|302819136|ref|XP_002991239.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
 gi|300140950|gb|EFJ07667.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
          Length = 561

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 6/192 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS---GLKPDTFV 111
           F  A AVF+ +   G +PT +++  ++ +YS+ G +   + +   +  S    +KPD  +
Sbjct: 205 FDKAEAVFQRLLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARM 264

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N M++ YG+ G+ E+   V  +M++   A  I T+N L+         +  E +F+ L 
Sbjct: 265 YNLMIHTYGKQGKVEQAMSVYQSMKRERVALTIVTFNSLLACQKT---WKDAEDVFRKLQ 321

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           A +L PDV ++T+ + AY++ +        F++MI AG  P       LI+A +     E
Sbjct: 322 AAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPE 381

Query: 232 QVTTLVRTMHKD 243
               +++ M ++
Sbjct: 382 GARAVLKQMKQN 393



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 94/197 (47%), Gaps = 6/197 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AHA F++M   GI PT  ++  L+ AY+K  +      V+ QM ++G  P      S+++
Sbjct: 348 AHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLIS 407

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y  +    K E+ +  M++     ++ T+ +L+  Y  G  ++ M   F+++    L+P
Sbjct: 408 AYVSVNLMAKAEQTVLRMKEADLQPNLQTFCVLMTGYANGNKLDNMMRSFETMKLAGLEP 467

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +   +T  + AY     +   +  +++M+  G  PD     VL+    S +Q E++  L+
Sbjct: 468 NRHVYTVLVNAYGSNDDFDSAIIWYKQMLGTGYKPDPILRTVLLKIAKSHEQTEEIHELL 527

Query: 238 ------RTMHKDMKTAL 248
                 R++ + + T L
Sbjct: 528 GMQKPARSLEEGLDTGL 544



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
             +F+ M  LG+   ++ + L +  Y +  +  K E V  ++  +G  P      +M+  
Sbjct: 174 EGIFQRMAELGVVANIEMYTLQIEGYGRRRSFDKAEAVFQRLLTTGPSPTAQTYQTMMKS 233

Query: 119 Y---GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           Y   GRL   +++ +++T     +   D   YN++I+ YG+ G +E+   ++QS+  +R+
Sbjct: 234 YSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRERV 293

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              +VT+ S LA    +K ++   ++F ++  A   PD  +   L++A +   + E
Sbjct: 294 ALTIVTFNSLLAC---QKTWKDAEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAE 346



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 78/186 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  VF +++   + P + S+  L+ AY+K           + M  +G++P     N+
Sbjct: 310 WKDAEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNA 369

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y +    E    VL  M++      + +Y  LI+ Y     + K E     +    
Sbjct: 370 LINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEAD 429

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P++ T+   +  Y+        +  FE M  AG  P+     VL++A  S D  +   
Sbjct: 430 LQPNLQTFCVLMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSAI 489

Query: 235 TLVRTM 240
              + M
Sbjct: 490 IWYKQM 495



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 3/138 (2%)

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           Y + GQ +K E +   M +    A+I  Y + I  YGR    +K E +FQ L      P 
Sbjct: 164 YCKDGQVDKTEGIFQRMAELGVVANIEMYTLQIEGYGRRRSFDKAEAVFQRLLTTGPSPT 223

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA---GCYPDGGTAKVLISACSSEDQIEQVTT 235
             T+ + + +YS          IF+ + D+      PD     ++I     + ++EQ  +
Sbjct: 224 AQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQGKVEQAMS 283

Query: 236 LVRTMHKDMKTALPIYFN 253
           + ++M ++      + FN
Sbjct: 284 VYQSMKRERVALTIVTFN 301



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/104 (20%), Positives = 54/104 (51%)

Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194
           ME+G Y  +   Y +++  Y + G ++K EG+FQ +    +  ++  +T ++  Y R++ 
Sbjct: 145 MEQGWYNFNQKDYFLVLLAYCKDGQVDKTEGIFQRMAELGVVANIEMYTLQIEGYGRRRS 204

Query: 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           + +   +F+ ++  G  P   T + ++ + S   +++ V  + +
Sbjct: 205 FDKAEAVFQRLLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFK 248


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 25/243 (10%)

Query: 5   QCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIY-------FSD 57
           Q     L    R+P +     LP  S  +  + + L+  PN + F   ++        +D
Sbjct: 172 QAANAVLSALSRSPST-----LPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLAD 226

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A    M+  G++P   ++  LL A+ + G + +   ++ +M + G+ P     N++++
Sbjct: 227 ALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVS 286

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI-------EKMEGLFQSL 170
            + RLG  ++  +V+ +M    +  D+ TYN+L     + G +       ++ME L  +L
Sbjct: 287 AFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTAL 346

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
                 PDVVT+ + + A  + +     L + EEM D G  P   T  +++ +   E ++
Sbjct: 347 ------PDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKL 400

Query: 231 EQV 233
           E+ 
Sbjct: 401 EEA 403



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 88/179 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A    E++   G+ P + ++  L+ AY K GNVAK   ++++M   GLK DTF +N+
Sbjct: 400 LEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNT 459

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    ++ ++E  EE+L +  +  +  D  +Y  ++  Y +    E    L+  +  ++
Sbjct: 460 VLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERK 519

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           L P + T+ + +    R +  +  ++   E ++ G  PD  T  ++I A   E  +E  
Sbjct: 520 LIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENA 578



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 4/208 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  + EEM+  G+ PT+ +H +++ +  K G + +  G + ++ + GL PD    N++
Sbjct: 366 SDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTL 425

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y + G   K   ++  M       D  T N ++    +    E  E L  S P +  
Sbjct: 426 IDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGF 485

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVT 234
            PD V++ + +AAY ++      L ++++MI+    P   T   LI   C  E   E + 
Sbjct: 486 VPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAID 545

Query: 235 TLVRTMHKDM---KTALPIYFNLYGEKG 259
            L   + K +   +T   I  + Y ++G
Sbjct: 546 KLNEFVEKGLVPDETTYNIIIHAYCKEG 573



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 5/196 (2%)

Query: 50  IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + + YF +     A  ++++M    + P++ ++  L+    +   + +    +N+  + G
Sbjct: 495 VMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKG 554

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           L PD    N +++ Y + G  E        M + S+  D+ T N L+N     G ++K  
Sbjct: 555 LVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKAL 614

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            LF+S   K  K DV+T+ + + +  +       L  F++M   G  PD  T  V++SA 
Sbjct: 615 KLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSAL 674

Query: 225 SSEDQIEQVTTLVRTM 240
           S   + E+   ++  +
Sbjct: 675 SEAGRSEEAHNMLHKL 690



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN---LYGRLGQF 125
           G+ P   ++ +++ AY K G++       N+M ++  KPD    N+++N   L+G+L + 
Sbjct: 554 GLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKA 613

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
            K+ E  + +EKG    D+ TYN LI    + G ++     F  +  K L+PD  T+   
Sbjct: 614 LKLFE--SWVEKGK-KVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVV 670

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           L+A S          +  ++ D+G         +L  + + E  +++
Sbjct: 671 LSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKE 717



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 3/186 (1%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNV--AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +R G+ P++++   +L+A S++ +        V   + +  L P+ +  N +++ +   G
Sbjct: 163 RRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKG 222

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
                   L+ M+    + D  TYN L+N + R G + +   L   +    + P   T+ 
Sbjct: 223 TLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYN 282

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           + ++A++R    ++  ++ E M   G  PD  T  VL        ++++   L   M + 
Sbjct: 283 TLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMER- 341

Query: 244 MKTALP 249
           + TALP
Sbjct: 342 LGTALP 347



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 1/175 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +     + G  P   S+  ++ AY K  N      + +QM +  L P     N+
Sbjct: 470 YEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    R+ + ++  + L    +     D +TYNI+I+ Y + G +E        +    
Sbjct: 530 LIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENS 589

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSSED 228
            KPDVVT  + +          + L++FE  ++ G   D  T   LI S C   D
Sbjct: 590 FKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGD 644


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 1/169 (0%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVINSMLNLYGRLGQFEKMEEVL 132
           ++S  L++    + G V K + ++++M   G+ KP+ F  N++LN Y      + ++E+L
Sbjct: 216 VQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEIL 275

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
             MEK      ++TY+ILI  Y   G IE+ E +F+ +  K ++ DV  ++S ++   R 
Sbjct: 276 KLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRL 335

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
              +R   +F+EM      P+  T   LI       Q+E    L+  M 
Sbjct: 336 GNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQ 384



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+F+EM +  I P   ++  L+    K G +   E ++ +M   G+  +  + N+ ++
Sbjct: 341 AFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMD 400

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN------------------------- 152
            Y R G+ ++   +   MEK    AD+ TYNIL N                         
Sbjct: 401 GYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKP 460

Query: 153 ----------IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
                     IY + G + + E LF+ +  K   P+++T+ + + AY +K+  ++  +I 
Sbjct: 461 NVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIK 520

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            EMI+ G  PD  T   LI       ++++   L   M
Sbjct: 521 SEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEM 558



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 81/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  +   M   G+ P + +  + +  Y K GN+A+ E +   M K G  P+    N+
Sbjct: 443 YDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNT 502

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y +  + ++  ++ + M       D+ TY+ LI+     G +++   LF  +  K 
Sbjct: 503 LIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKG 562

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +  +V T+TS ++  S++       ++++EM+  G  PD      L+ +
Sbjct: 563 ITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGS 611



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 37/247 (14%)

Query: 55  FSDAHAVFEEM-------------------KRLG----------------ITPTMKSHML 79
             +A  +FEEM                   +RLG                I P   ++  
Sbjct: 303 IEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGA 362

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+    K G +   E ++ +M   G+  +  + N+ ++ Y R G+ ++   +   MEK  
Sbjct: 363 LIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKG 422

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
             AD+ TYNIL N   +    ++ + +  S+  K +KP+VVT+T  +  Y ++       
Sbjct: 423 INADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAE 482

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNL-YGE 257
            +F +M   G  P+  T   LI A   +++++Q   +   M +K +   L  Y +L +GE
Sbjct: 483 RLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGE 542

Query: 258 KGVARSN 264
             V R +
Sbjct: 543 CIVGRVD 549



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/207 (18%), Positives = 92/207 (44%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + + M++  +  ++ ++ +L+  YS +G++ + E +  +M +  ++ D +V +SM++   
Sbjct: 274 ILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSR 333

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           RLG  ++   +   M +     +  TY  LI    + G +E  E L   + +K +  ++V
Sbjct: 334 RLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLV 393

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + +  Y R+      L +   M   G   D  T  +L +      + ++   ++ +M
Sbjct: 394 IFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSM 453

Query: 241 HKDMKTALPIYFNLYGEKGVARSNLGQ 267
            +       + F ++ E      NL +
Sbjct: 454 VEKGVKPNVVTFTMFIEIYCKEGNLAE 480



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 74/155 (47%), Gaps = 7/155 (4%)

Query: 44  PNL--FVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  F     IY      ++A  +F +M++ G  P + ++  L+ AY K   V +   +
Sbjct: 460 PNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKI 519

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            ++M   GL PD +  +S+++    +G+ ++  ++   M       +++TY  +I+   +
Sbjct: 520 KSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSK 579

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            G  ++   L+  +    L PD   +TS + ++ +
Sbjct: 580 EGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSFHK 614


>gi|297844892|ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336169|gb|EFH66586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 903

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VFE +    + P    H +L+  Y + G +     V + M + G++ +T + NS
Sbjct: 312 MEEAEQVFELVTEKKLVPDQHMHGVLIDGYCRNGRICDAVRVHDYMIEMGVRTNTTICNS 371

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y + GQ  + E++LT M   S   D  TYN L++ Y R G +++   L   +  K 
Sbjct: 372 LINGYCKSGQLVEAEQILTRMNDWSLKPDHHTYNTLVDGYCRAGHVDEALKLCGRMCQKE 431

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + P V+T+   L  YSR   +   L +++ M+  G   +  +   L+ A
Sbjct: 432 VVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVTANEISCSTLLEA 480



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 2/180 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLY 119
           V+++M    ++P + +  +++ AY + G V K      +M  S GL+ +    NS++N Y
Sbjct: 212 VYDQMISFEVSPDVFTCSIVVNAYCRCGKVDKAMAFAKEMDNSLGLELNVVTCNSLINGY 271

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
             +G  E M  VL  M +   + ++ T+  LI  Y + G +E+ E +F+ +  K+L PD 
Sbjct: 272 AMIGDVEGMTRVLRLMSERGVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTEKKLVPDQ 331

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVR 238
                 +  Y R       + + + MI+ G   +      LI+  C S   +E    L R
Sbjct: 332 HMHGVLIDGYCRNGRICDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEAEQILTR 391



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 6/187 (3%)

Query: 43  TPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           +P +F  I  +Y       +A  VF+ M + G  P++ S   LL+   K G       V 
Sbjct: 154 SPTVFDMILKVYAEKGMVKNALHVFDNMGKYGRIPSLLSCNSLLSNLVKKGENFVALHVY 213

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGR 156
           +QM    + PD F  + ++N Y R G+ +K       M+       ++ T N LIN Y  
Sbjct: 214 DQMISFEVSPDVFTCSIVVNAYCRCGKVDKAMAFAKEMDNSLGLELNVVTCNSLINGYAM 273

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +E M  + + +  + +  +VVT+TS + +Y +K L     ++FE + +    PD   
Sbjct: 274 IGDVEGMTRVLRLMSERGVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTEKKLVPDQHM 333

Query: 217 AKVLISA 223
             VLI  
Sbjct: 334 HGVLIDG 340



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 88/185 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V + M  +G+         L+  Y K+G + + E ++ +M+   LKPD    N+++
Sbjct: 349 DAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEAEQILTRMNDWSLKPDHHTYNTLV 408

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G  ++  ++   M +      + TYNIL+  Y R G    +  L++ +  + + 
Sbjct: 409 DGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVT 468

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            + ++ ++ L A  +   +   ++++E ++  G   D  T  V+IS     +++ +   +
Sbjct: 469 ANEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEI 528

Query: 237 VRTMH 241
           +  ++
Sbjct: 529 LDNVN 533



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 2/165 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +   M    + P   ++  L+  Y + G+V +   +  +M +  + P     N +L
Sbjct: 384 EAEQILTRMNDWSLKPDHHTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILL 443

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
             Y R+G F  +  +   M ++G  A +IS   +L  ++  G F E M+ L++++ A+ L
Sbjct: 444 KGYSRIGAFHDVLSLWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMK-LWENVLARGL 502

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
             D +T    ++   + +      EI + +    C PD  T + L
Sbjct: 503 LTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPDVQTYQAL 547



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 76/190 (40%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V   M   G++  + +   L+ +Y K G + + E V   + +  L PD  +   +++ Y 
Sbjct: 283 VLRLMSERGVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTEKKLVPDQHMHGVLIDGYC 342

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+      V   M +     + +  N LIN Y + G + + E +   +    LKPD  
Sbjct: 343 RNGRICDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEAEQILTRMNDWSLKPDHH 402

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + +  Y R       L++   M      P   T  +L+   S       V +L + M
Sbjct: 403 TYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMM 462

Query: 241 HKDMKTALPI 250
            K   TA  I
Sbjct: 463 LKRGVTANEI 472



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 82/199 (41%), Gaps = 2/199 (1%)

Query: 41  QHTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
            HT N  V  +  + +  +A  +   M +  + PT+ ++ +LL  YS+ G       +  
Sbjct: 401 HHTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWK 460

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M K G+  +    +++L    +LG F++  ++   +       D  T N++I+   +  
Sbjct: 461 MMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTDTITLNVMISGLCKME 520

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            + + + +  ++   R KPDV T+ +    Y      +    + + M   G +P      
Sbjct: 521 KVNEAKEILDNVNIFRCKPDVQTYQALSHGYYNVGNLKEAFAVKDFMEKKGIFPTIEMYN 580

Query: 219 VLISACSSEDQIEQVTTLV 237
            LIS       + +V  LV
Sbjct: 581 TLISGAFKYKHLNKVADLV 599



 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 4/156 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  ++E +   G+     +  ++++   K   V + + +++ ++    KPD     +
Sbjct: 487 FDEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPDVQTYQA 546

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           + + Y  +G  ++   V   MEK      I  YN LI+   +   + K+  L   L A+ 
Sbjct: 547 LSHGYYNVGNLKEAFAVKDFMEKKGIFPTIEMYNTLISGAFKYKHLNKVADLVIELRARG 606

Query: 175 LKPDVVTWTSRLAAYSR----KKLYRRCLEIFEEMI 206
           L P V T+ + +  +       K Y  C E+ E+ I
Sbjct: 607 LTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGI 642



 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 73/169 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F D  ++++ M + G+T    S   LL A  K G+  +   +   +   GL  DT  +N 
Sbjct: 452 FHDVLSLWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTDTITLNV 511

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++   ++ +  + +E+L  +       D+ TY  L + Y   G +++   +   +  K 
Sbjct: 512 MISGLCKMEKVNEAKEILDNVNIFRCKPDVQTYQALSHGYYNVGNLKEAFAVKDFMEKKG 571

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + P +  + + ++   + K   +  ++  E+   G  P   T   LI+ 
Sbjct: 572 IFPTIEMYNTLISGAFKYKHLNKVADLVIELRARGLTPTVATYGALITG 620



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 22/190 (11%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           E++  G+TPT+ ++  L+T +   G + K      +M + G+  +  + + + N   RL 
Sbjct: 601 ELRARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLD 660

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIY-GRGGFIEK-----------MEGLFQSLP 171
           +F   +E    ++K      I  +++L+  Y     F+E             E +  S P
Sbjct: 661 KF---DEACLLLQK------IVDFDLLLPGYQSLKEFLEPSATTCLKTQKIAESVENSTP 711

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSEDQI 230
            K L P+ + +   +A   +        ++F +++ +  + PD  T  +LI  C+ +  I
Sbjct: 712 KKLLVPNNIVYNVAIAGLCKAGKLTDAQKLFSDLLSSDRFIPDEYTYTILIHGCAIDGDI 771

Query: 231 EQVTTLVRTM 240
            +   L   M
Sbjct: 772 NKAFNLRDEM 781


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 89/198 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+     GITP + S+ +L+  Y K   + +   + N+M+   L P+    +S++
Sbjct: 341 EARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLI 400

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+     E+ +A+  G  + ++ TYNI+++   +   ++K   LF  +  + L 
Sbjct: 401 DGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLT 460

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V ++   +  Y + K     + +FEEM      PD  T   LI       +I     L
Sbjct: 461 PNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWEL 520

Query: 237 VRTMHKDMKTALPIYFNL 254
              MH        I +N+
Sbjct: 521 FNVMHDGGPPVDVITYNI 538



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 78/170 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A ++F +M    + P + ++  L+    K+G ++    + + +H  G  P+    N M
Sbjct: 375 DEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIM 434

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   ++   +K  E+   M +     ++S+YNILIN Y +   I++   LF+ +  + L
Sbjct: 435 LDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNL 494

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            PD VT+   +    +        E+F  M D G   D  T  +L  A S
Sbjct: 495 VPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFS 544



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 83/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +   M   G  P + +   L++ Y    +V +   + +   + G+ PD +  N ++ 
Sbjct: 307 AHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILII 366

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +  + ++   +   M     A +I TY+ LI+   + G I     LF ++      P
Sbjct: 367 GYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSP 426

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+T+   L A  + +L  + +E+F  M + G  P+  +  +LI+      +I++   L 
Sbjct: 427 NVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLF 486

Query: 238 RTMHK 242
             MH+
Sbjct: 487 EEMHR 491



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 87/185 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  +M+   + P +  + +++    K G V +   + + +   G+ PD F    ++
Sbjct: 201 EAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLI 260

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +  LGQ+ ++  +L  M   +   ++ TYNILI+   + G + K   +   +  +  +
Sbjct: 261 HGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQR 320

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+VT+ + ++ Y          ++F+   + G  PD  +  +LI      ++I++  +L
Sbjct: 321 PDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSL 380

Query: 237 VRTMH 241
              M+
Sbjct: 381 FNKMN 385



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 89/204 (43%), Gaps = 7/204 (3%)

Query: 44  PNLFVFIFSIYFSDAHAVFEEMKRL-------GITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P++F +   I+       + E+ RL        +   + ++ +L+ A  K G + K   +
Sbjct: 251 PDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDM 310

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            N M + G +PD    N++++ Y       +  ++     +     D+ +YNILI  Y +
Sbjct: 311 RNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCK 370

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              I++   LF  +  K+L P++VT++S +    +        E+F  + D G  P+  T
Sbjct: 371 NNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVIT 430

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
             +++ A      +++   L   M
Sbjct: 431 YNIMLDALCKIQLVDKAIELFNLM 454



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  M   G+TP + S+ +L+  Y K+  + +   +  +MH+  L PD+   N +++
Sbjct: 447 AIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLID 506

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              + G+     E+   M  G    D+ TYNIL + + +
Sbjct: 507 GLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSK 545



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 93/215 (43%), Gaps = 2/215 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++  A ++ ++M   GITP++ +  +L+  Y   G++     V+  + K G + +   + 
Sbjct: 93  HYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLT 152

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++      G+  K  E   ++    +  D  TY  LIN   + G   +   L   +  +
Sbjct: 153 TIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQ 212

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++P+VV +   +    +  L     +++ +++  G  PD  T   LI       Q  +V
Sbjct: 213 VVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREV 272

Query: 234 TTLVRTMHKDMKTALPIY-FNLYGEKGVARSNLGQ 267
           T L+  M  D    L +Y +N+  +    +  LG+
Sbjct: 273 TRLLCDM-VDRNVNLNVYTYNILIDALCKKGMLGK 306



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +F  +   G +P + ++ ++L A  K   V K   + N M + GL P+    N +
Sbjct: 410 SYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNIL 469

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y +  + ++   +   M + +   D  TYN LI+   + G I     LF  +     
Sbjct: 470 INGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGP 529

Query: 176 KPDVVTWTSRLAAYSR 191
             DV+T+     A+S+
Sbjct: 530 PVDVITYNILFDAFSK 545



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/199 (17%), Positives = 78/199 (39%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  ++ ++   GI P + ++  L+  +   G   +   ++  M    +  + +  N +
Sbjct: 235 TEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNIL 294

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G   K  ++   M +     D+ T+N L++ Y     + +   LF +     +
Sbjct: 295 IDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGI 354

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV ++   +  Y +       L +F +M      P+  T   LI       +I     
Sbjct: 355 TPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWE 414

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L   +H    +   I +N+
Sbjct: 415 LFSAIHDGGPSPNVITYNI 433


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 4/154 (2%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           ++L AY + GN+++   +  QM   GL P+ +   S+L     LG  +  E++ T + K 
Sbjct: 385 VMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS 444

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            +  ++   ++LI++Y + G ++   G+ Q L     + DVV+WT+ +A Y++  L+   
Sbjct: 445 GFQFNVYVCSVLIDMYAKHGELDTARGILQRLR----EEDVVSWTAMIAGYTQHDLFAEA 500

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           L++F+EM + G   D       ISAC+    + Q
Sbjct: 501 LKLFQEMENQGIRSDNIGFSSAISACAGIQALNQ 534



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 92/187 (49%), Gaps = 8/187 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA+  FE++          S   L++ ++++G+  +   V +QM+++G++ + F   S +
Sbjct: 569 DAYLAFEKID----AKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAV 624

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +        ++ +++   M K  Y ++    N+LI +Y + G IE  +  F  +P K   
Sbjct: 625 SATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEK--- 681

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +VV+W + +  YS+       + +FEEM   G  P+  T   ++SACS    + +  + 
Sbjct: 682 -NVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSY 740

Query: 237 VRTMHKD 243
            R+M K+
Sbjct: 741 FRSMSKE 747



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFE   RL +  ++ S + +++  S+ G   +   +  QMHKS + P  +V +S+L+
Sbjct: 166 AKLVFE---RLFLKDSV-SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLS 221

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++  F+  E++   + K   +++    N L+ +Y R G +   E +F    +K  + 
Sbjct: 222 ACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIF----SKMHRR 277

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           D +++ S ++  +++    R L++FE+M      PD  T   L+SAC+S
Sbjct: 278 DRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACAS 326



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M +  + PT      +L+A +K       E +   + K GL  +TFV N+++
Sbjct: 196 EAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALV 255

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            LY R G     E++ + M +     D  +YN LI+   + GF ++   LF+ +    +K
Sbjct: 256 TLYSRWGNLIAAEQIFSKMHR----RDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311

Query: 177 PDVVTWTSRLAA 188
           PD VT  S L+A
Sbjct: 312 PDCVTVASLLSA 323



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 4/157 (2%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S +  +A  VF +M + G+   + +    ++A + T N+ + + +   M K+G   +
Sbjct: 592 FAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSE 651

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           T   N ++ LY + G  E  +     M +     ++ ++N +I  Y + G+  +   LF+
Sbjct: 652 TEASNVLITLYSKCGSIEDAKREFFEMPE----KNVVSWNAMITGYSQHGYGSEAVSLFE 707

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            +    L P+ VT+   L+A S   L    L  F  M
Sbjct: 708 EMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSM 744



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/184 (18%), Positives = 81/184 (44%), Gaps = 8/184 (4%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++  Y++    A+   +  +M   G++ D    +S ++    +    + +++        
Sbjct: 487 MIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISG 546

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y+ D+S  N L+++Y R G  +     F+ + AK    D ++W + ++ +++       L
Sbjct: 547 YSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAK----DNISWNALISGFAQSGHCEEAL 602

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV----TTLVRTMHKDMKTALPIYFNLY 255
           ++F +M  AG   +  T    +SA ++   I+Q       +++T +     A  +   LY
Sbjct: 603 QVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLY 662

Query: 256 GEKG 259
            + G
Sbjct: 663 SKCG 666



 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 38/192 (19%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHK----------SGL---------------------KPD 108
           L+T YS+ GN+   E + ++MH+          SGL                     KPD
Sbjct: 254 LVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPD 313

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
              + S+L+    +G   K +++ + + K   ++D+     L+++Y +   IE     F 
Sbjct: 314 CVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFL 373

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS-- 226
           +   +    +VV W   L AY +         IF +M   G  P+  T   ++  C+S  
Sbjct: 374 TTETE----NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429

Query: 227 -EDQIEQVTTLV 237
             D  EQ+ T V
Sbjct: 430 ALDLGEQIHTQV 441



 Score = 37.7 bits (86), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           LI+IY   G ++    LF  +P+     +V  W   ++    KKL  + L +F  MI   
Sbjct: 51  LIDIYLAHGEVDNAIKLFDDIPS----SNVSFWNKVISGLLAKKLASQVLGLFSLMITEN 106

Query: 210 CYPDGGTAKVLISACSSEDQIEQVT 234
             PD  T   ++ ACS      QVT
Sbjct: 107 VTPDESTFASVLRACSGGKAPFQVT 131


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 91/185 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +FEEMK  G+ P++ S+  L+  +   G   + + ++++M   GL+PD    N +
Sbjct: 232 DEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVL 291

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+  + +++L  M +     D+ TYN LI  +   G +     LF S+P+K  
Sbjct: 292 IDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGC 351

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDV+++   +  YS+       ++++ EM+  G  P+  T   L+       +++    
Sbjct: 352 EPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKK 411

Query: 236 LVRTM 240
           L   M
Sbjct: 412 LFSVM 416



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 66/132 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + ++  + +EM   G+ P M +  +L+    K G V + + ++  M +SG+ PD    NS
Sbjct: 266 WEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNS 325

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  +  +G      E+  +M       D+ +YN+LIN Y +   +E+   L+  +    
Sbjct: 326 LIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVG 385

Query: 175 LKPDVVTWTSRL 186
            +P+V+T+ S L
Sbjct: 386 KRPNVITYDSLL 397



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 78/169 (46%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + ++ +++    K G   + + +  +M   G+ P     NS+++ +   G++E+ + +
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRL 272

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           L  M       D+ T+N+LI+   + G + + + L   +    + PD+VT+ S +  +  
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM 332

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                   E+F  M   GC PD  +  VLI+  S   ++E+   L   M
Sbjct: 333 VGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEM 381



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/208 (18%), Positives = 90/208 (43%), Gaps = 7/208 (3%)

Query: 37  FLLLQHTPNLFVF---IFSIYFS----DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
            LL+   PN+  +   +  I+ +    DA  +F  MK  GI     ++ + L    K   
Sbjct: 381 MLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDC 440

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           + +   +  ++  S  K +   +N +++   + G+ E   E+   +    +  ++ TY I
Sbjct: 441 LFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTI 500

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +I+ + R G ++K   L Q + A    PD++T+ + +  +         +++   M    
Sbjct: 501 MIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKD 560

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLV 237
             PD  T  +++   S +++ ++   L+
Sbjct: 561 VSPDAITCSIVVDMLSKDEKYQECLHLL 588



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 36/226 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A  +F  M   G  P + S+ +L+  YSKT  V +   + N+M   G +P+    +S
Sbjct: 336 LNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDS 395

Query: 115 MLN---LYGRLGQFEKMEEVL--------------------------------TAMEKGS 139
           +L    L G++   +K+  V+                                T ++  +
Sbjct: 396 LLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSN 455

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           +  +I   N LI+   + G +E    LF+ L  +  +P+VVT+T  +  + R+    +  
Sbjct: 456 FKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKAN 515

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDM 244
            + ++M   GC PD  T   L+      +++E+V  L+  M  KD+
Sbjct: 516 VLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDV 561



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM------HKSGLKPD 108
            S+A  +F  M++LG TP + ++  L+     TGN+     +  +M      ++   KP+
Sbjct: 155 ISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPN 214

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N +++   ++G+ ++ +++   M+       I +YN LI+ +   G  E+ + L  
Sbjct: 215 VITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLD 274

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +  + L+PD+VT+   +    ++       ++   MI++G  PD  T   LI  
Sbjct: 275 EMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEG 329



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 11/193 (5%)

Query: 58  AHAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            HA+  F  M R   TP++ S   LL+  +K  + ++   + NQM  SGL  D   +N +
Sbjct: 51  THALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNIL 110

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LN    + +  +       + +  Y+ +I TYN LI        I +   LF  +     
Sbjct: 111 LNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGC 170

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI------DAGCYPDGGTAKVLISA---CSS 226
            PDVVT+ + +            L++ +EM+      +  C P+  T  +++        
Sbjct: 171 TPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGR 230

Query: 227 EDQIEQVTTLVRT 239
           ED+ +Q+   ++T
Sbjct: 231 EDEAKQLFEEMKT 243



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 2/175 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGV--INQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           P+    +     + KTGNV     +   + M +S   P     N +L+   ++  + ++ 
Sbjct: 30  PSPNPQIAFFLRHCKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVF 89

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
            +   M     ++D  T NIL+N       + +    F  +  +   P++VT+ + +   
Sbjct: 90  SLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGL 149

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
             +        +F  M   GC PD  T   LI        I     L + M  D+
Sbjct: 150 CMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDI 204



 Score = 41.6 bits (96), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 35/232 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +   M   GI P + ++  L+  +   G++     +   M   G +PD    N ++
Sbjct: 303 EAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLI 362

Query: 117 NLYGRL-----------------------------------GQFEKMEEVLTAMEKGSYA 141
           N Y +                                    G+ +  +++ + M+    A
Sbjct: 363 NGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIA 422

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            +  TY I ++   +   + +   LF  L +   K ++      +    +        E+
Sbjct: 423 ENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWEL 482

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           FE++ + G  P+  T  ++I     E Q+++   L++ M  +  T   I +N
Sbjct: 483 FEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYN 534


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 8/188 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA   F+ +    +   + S  ++++ Y++T    K      QM + G+KP+ + + S
Sbjct: 304 LEDAGVAFDRL----VNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLAS 359

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L+    +   E   ++     K  +  DI   + L+++YG+ G +E  E +F+ L ++ 
Sbjct: 360 CLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISR- 418

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              D+V+W + ++ YS+     + LE F  M+  G  PD  T   ++SACS    +E+  
Sbjct: 419 ---DIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGK 475

Query: 235 TLVRTMHK 242
               +M K
Sbjct: 476 KRFDSMSK 483



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF +++     P + +   ++T   + G+  +   + + M + G +P+ F ++S++
Sbjct: 104 DALKVFTKIR----NPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLV 159

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +    +G     + +   + K  + +D    N LI +Y +   +E    +F+++      
Sbjct: 160 STATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT----N 215

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           PD+V+W + L+ +   +   R   IF +M+  G  P+  T   ++ +CSS
Sbjct: 216 PDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSS 265


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 33  MLINFLLLQHTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           + +N +    TPN+ V+  +   Y      S+A A+F E++R  ++P + ++ +L+    
Sbjct: 309 LFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLC 368

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
                 +   +  +M K G+  ++   NS+++   + G+ +K  E+ + M +     ++ 
Sbjct: 369 SVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVI 428

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           T++ LI+ Y +   ++   G++  +  K L PDVVT+T+ +  + +    +  L+++ +M
Sbjct: 429 TFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDM 488

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +D G  P+  T   L+     + +I     L
Sbjct: 489 LDNGITPNCYTISCLLDGLCKDGKISDALEL 519



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 80/189 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A ++   M+ +G+ P + ++  L+  Y K  N  +   +   M   GL PD      
Sbjct: 233 IEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGI 292

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G+ +    +   M K S   +I+ YN LI+ Y + G + +   LF  L    
Sbjct: 293 LIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFE 352

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDV T++  +              IFE+M   G   +  T   LI  C  E ++++  
Sbjct: 353 VSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKAL 412

Query: 235 TLVRTMHKD 243
            +   M ++
Sbjct: 413 EICSQMTEN 421



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 88/196 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM+  GI PT+  + +L+        + + E +   M + G+ P+ +  N++++
Sbjct: 201 AQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMD 260

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y +L   ++   +   M       D+ T+ ILI+   + G ++    LF ++    + P
Sbjct: 261 GYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTP 320

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++  + S + AY +       + +F E+      PD  T  +LI    S  + E+   + 
Sbjct: 321 NIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIF 380

Query: 238 RTMHKDMKTALPIYFN 253
             M K+   A  + +N
Sbjct: 381 EKMTKEGILANSVTYN 396



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 5/153 (3%)

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
           S LK   F  N    L   L + E +EE L+   K   A  I   N+L+ +  + G  E 
Sbjct: 106 SRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKVGAALTIQACNVLLYVLVKTGRFEL 165

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +  +++ + +  L P V+T+ + +    R+    R  E+F+EM   G  P      +LI 
Sbjct: 166 LWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIR 225

Query: 223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
              S+++IE+      +MH+ M+  + +Y N+Y
Sbjct: 226 GLCSDNKIEE----AESMHRAMR-EVGVYPNVY 253



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 78/165 (47%), Gaps = 3/165 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +FE+M + GI     ++  L+    K G + K   + +QM ++G++P+    ++++
Sbjct: 375 EAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLI 434

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y ++   +    + + M   S + D+ TY  +I+ + + G +++   L+  +    + 
Sbjct: 435 DGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGIT 494

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMID---AGCYPDGGTAK 218
           P+  T +  L    +       LE+F E I+     C  D G +K
Sbjct: 495 PNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSK 539



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 76/176 (43%)

Query: 67  RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE 126
           ++G   T+++  +LL    KTG       +  +M  +GL P      ++++   R G   
Sbjct: 140 KVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLL 199

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
           + +E+   M        +  Y ILI        IE+ E + +++    + P+V T+ + +
Sbjct: 200 RAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLM 259

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             Y +    ++ L ++++M+  G  PD  T  +LI       +++    L   M K
Sbjct: 260 DGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIK 315



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 80/178 (44%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L+V + +  F     ++EEM   G++P++ +   L+    + G++ + + + ++M   G+
Sbjct: 154 LYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGI 213

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P   V   ++       + E+ E +  AM +     ++ TYN L++ Y +    ++   
Sbjct: 214 VPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALR 273

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L+Q +  + L PDVVT+   +    +    +    +F  MI     P+      LI A
Sbjct: 274 LYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDA 331



 Score = 38.1 bits (87), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 8/182 (4%)

Query: 62  FEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           F E+ RL     TP +   ++++        +   E  ++  HK G        N +L +
Sbjct: 102 FSELSRLKSSKFTPNVYGELIIVLC-----KMELVEEALSMYHKVGAALTIQACNVLLYV 156

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
             + G+FE +  +   M     +  + T+  LI+   R G + + + +F  +  K + P 
Sbjct: 157 LVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPT 216

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           V+ +T  +              +   M + G YP+  T   L+         +Q   L +
Sbjct: 217 VIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQ 276

Query: 239 TM 240
            M
Sbjct: 277 DM 278


>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 875

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           HA+  EM    I P + ++  L+  YSK         + ++M    ++ D    N+++ L
Sbjct: 351 HAIDVEMPAKNILPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGL 410

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           Y  LG FE+       ME      D+ TYN LI  YGR     ++  LF  + A+R+ P+
Sbjct: 411 YANLGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPN 470

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
            +T+++ +  Y++ ++Y   ++++ E+   G   D      LI A      IE    L+ 
Sbjct: 471 DLTYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLLD 530

Query: 239 TM 240
            M
Sbjct: 531 VM 532



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 86/185 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F DA  +++EMK L I     S+  L+  Y+  G   +  G   +M   G+K D    N+
Sbjct: 382 FEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTYNA 441

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  YGR  ++ ++ ++   M+      +  TY+ LI IY +G    +   +++ L  + 
Sbjct: 442 LIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEG 501

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +K DVV +++ + A  +  L    L + + M + G  P+  T   +I A     Q+  + 
Sbjct: 502 MKTDVVFYSALIDALCKNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFRIGQQLPALE 561

Query: 235 TLVRT 239
             V T
Sbjct: 562 CAVDT 566



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 81/155 (52%), Gaps = 6/155 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI---NQMHKSGLKPDTFV 111
           FS+A ++   M   G+ P + ++  ++ A +K G +   E V+    +M  +G  PD   
Sbjct: 240 FSEAVSLLRSMGNFGLEPNLVTYNAIIDAGAK-GELP-FEIVVKFLEEMIAAGCLPDRLT 297

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE-KMEGLFQSL 170
            NS+L      G+++   ++L  ME      D+ TYN  ++   +GG ++     +   +
Sbjct: 298 YNSLLKTCVAKGRWQLCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEM 357

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           PAK + P+VVT+++ +A YS+ + +   L I++EM
Sbjct: 358 PAKNILPNVVTYSTLMAGYSKAERFEDALNIYDEM 392



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 5/171 (2%)

Query: 75  KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA 134
           + ++ LL  ++ TG++       N    S    +TF+     N+   LG+ +K+E  L  
Sbjct: 153 EDYVYLLKEFANTGDLLLATRTYN-FAMSRATDNTFMGKLTSNMIRTLGRLKKIELALNL 211

Query: 135 MEKG---SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            E+     Y   + +++ +I+  GR     +   L +S+    L+P++VT+ + + A ++
Sbjct: 212 FEESRNRGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGNFGLEPNLVTYNAIIDAGAK 271

Query: 192 KKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            +L +   ++  EEMI AGC PD  T   L+  C ++ + +    L+  M 
Sbjct: 272 GELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDLLAEME 322



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 65/136 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F +A   F+EM+  GI   + ++  L+  Y +     +   + ++M    + P+    +
Sbjct: 416 WFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYS 475

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++ +Y +   + +  +V   +++     D+  Y+ LI+   + G IE    L   +  K
Sbjct: 476 TLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLLDVMTEK 535

Query: 174 RLKPDVVTWTSRLAAY 189
             +P+VVT+ S + A+
Sbjct: 536 GSRPNVVTYNSIIDAF 551


>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           citrodora]
          Length = 435

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 97/202 (48%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A A+  EMK  G+ P   S+  LLT Y +     +   V +
Sbjct: 86  LVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVFS 145

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 146 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIETNVVSYNTLLRVYGDAE 205

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 206 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 265

Query: 219 VLISACSSEDQIEQVTTLVRTM 240
            +IS      ++++   L + +
Sbjct: 266 TIISIWGKVGKLDRAAMLFQKL 287



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 77/164 (46%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H +F+EM+   ++P   ++  L+T + K G        + +M +  +  D  + ++++ L
Sbjct: 1   HGLFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIEL 60

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
             +L  + K   + + +++  +  D+  YN +IN++G+     +   L   +    + P+
Sbjct: 61  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPN 120

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
             ++++ L  Y   K +   L +F EM +  C  D  T  ++I 
Sbjct: 121 TASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMID 164



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 67  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYST 126

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V + M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 127 LLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 186

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++ +VV++ + L  Y   +L+   + +F  M
Sbjct: 187 IETNVVSYNTLLRVYGDAELFGEAIHLFRLM 217



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI   + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 174 EADKLFWGMRKMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 233

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 234 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVE 293

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 294 IDQVLYQTMIVAYERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEATYV 349

Query: 237 VR 238
            R
Sbjct: 350 FR 351



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y + G   + + +   M K G++ +    N+
Sbjct: 137 FIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIETNVVSYNT 196

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   L Q +  + 
Sbjct: 197 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG 256

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 257 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 305



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/219 (17%), Positives = 91/219 (41%), Gaps = 31/219 (14%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 207 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 266

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP--- 171
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 267 IISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPD 326

Query: 172 -------------AKRLKP---------------DVVTWTSRLAAYSRKKLYRRCLEIFE 203
                        A R++                D+  +   +  +S+ K Y   +E+F+
Sbjct: 327 NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANAVEVFD 386

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +M   G +PD     ++++A     ++++   +   M +
Sbjct: 387 KMRGLGYFPDSNVIALVLNAYGKLHELDKANDVYMEMQE 425


>gi|168055626|ref|XP_001779825.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668737|gb|EDQ55338.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 734

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 102/239 (42%), Gaps = 43/239 (17%)

Query: 39  LLQHTP---NLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           LL   P   NL +  FS +        V + MK LG+ P + ++ +L+ +  +    +K 
Sbjct: 272 LLSRNPWHYNLIIREFSRHGNLRSCFKVLDFMKELGVMPDVFTYRVLIDSCGRHKEPSKA 331

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL--- 150
             V  +M   G +P+ FV NS++N+   +G   ++      M+    AAD+++YNIL   
Sbjct: 332 TIVFEKMLNDGFEPNRFVYNSIMNV--NVGNLSEVRRYFQHMQGAGIAADVTSYNILLKA 389

Query: 151 ---------------------------------INIYGRGGFIEKMEGLFQSLPAKRLKP 177
                                            IN++G+    E+   +   +    + P
Sbjct: 390 YAASGRADLAGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRVKADMLEAGVTP 449

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +VVTWTS + A +   L  +    F+EM++AGC P+     +L+ AC    Q ++   L
Sbjct: 450 NVVTWTSIIGACATAGLVDQSFREFDEMLNAGCRPNVNCYNMLLQACIMASQFDRAFLL 508



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 92  KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           K   ++ +M   GL PD    + +L+ YG  G  E   E L  M+   +  D+  Y  LI
Sbjct: 583 KVRSLMREMRALGLVPDVKSWSILLDSYGSKGDVEGASEALEEMKAAGFKPDVVAYTSLI 642

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS---RLAAYSRKKLYRRCLEIFEEMIDA 208
               + G +EK    F  + A  ++P+ VT+ S   R   Y      +R L ++EEM +A
Sbjct: 643 QACVQAGHLEKAFDYFSKMKAAGVRPNAVTYNSLLRRHRNYGTLPEVQRALALYEEMREA 702

Query: 209 G 209
           G
Sbjct: 703 G 703



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 13/183 (7%)

Query: 50  IFSIYFSDAHAVFEEMKRLG-----------ITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           I +  F  A  +FEE K  G             P  K+H L+             E +  
Sbjct: 497 IMASQFDRAFLLFEEWKTTGRMRSYSEIFNYSAPLAKTHELITVIPGSLLQSNLGEKIDE 556

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +  +  +P+    N M+   G     EK+  ++  M       D+ +++IL++ YG  G
Sbjct: 557 DVRLACCRPNIITYNCMMKACGSAS--EKVRSLMREMRALGLVPDVKSWSILLDSYGSKG 614

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            +E      + + A   KPDVV +TS + A  +     +  + F +M  AG  P+  T  
Sbjct: 615 DVEGASEALEEMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDYFSKMKAAGVRPNAVTYN 674

Query: 219 VLI 221
            L+
Sbjct: 675 SLL 677



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 51/106 (48%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            ++  EM+ LG+ P +KS  +LL +Y   G+V      + +M  +G KPD     S++  
Sbjct: 585 RSLMREMRALGLVPDVKSWSILLDSYGSKGDVEGASEALEEMKAAGFKPDVVAYTSLIQA 644

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
             + G  EK  +  + M+      +  TYN L+  +   G + +++
Sbjct: 645 CVQAGHLEKAFDYFSKMKAAGVRPNAVTYNSLLRRHRNYGTLPEVQ 690


>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 95/187 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR GITP + ++  ++  + K     +   +I++M ++G+ PDT   ++
Sbjct: 60  YSKAISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+    ++ + LF S+    
Sbjct: 120 LLTMYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VV++ + L  Y   +L+   + +F  M       +  T   ++       + E+  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 235 TLVRTMH 241
            L++ MH
Sbjct: 240 NLIQEMH 246



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 96/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+ P   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+L   ++ +++  +M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ + +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPNAITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    N+M+
Sbjct: 167 EADKLFWSMRKVGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M       +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 227 MIYGKTLEHEKANNLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVE 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 287 IDHVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDTAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 77/174 (44%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++     D+  YN +IN++G+     +   L   +    + PD V++++ L  
Sbjct: 64  ISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   + +   L +F EM +  C  D  T  ++I      D  ++   L  +M K
Sbjct: 124 YVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRK 177



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 83/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y +     + + +   M K G++P+    N+
Sbjct: 130 FLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNT 189

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++     ++ TYN ++ IYG+    EK   L Q +  + 
Sbjct: 190 LLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRG 249

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 250 IEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVA 298



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +MH  G++P+    ++
Sbjct: 200 FGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPNAITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYPNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+FE+M   G +PD     ++++A
Sbjct: 376 EVFEKMRGLGYFPDSNVISLVLNA 399


>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 426

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 98/203 (48%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A A+  EM+  G+ P   S+  LLT Y +     +   + +
Sbjct: 79  LVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLFS 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++  +M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM D G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 83/151 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR GI P + ++  ++  + K     +   ++++M  +G+ PDT    +
Sbjct: 60  YSRAISIFSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCT 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   + + M +   + D++T NI+I++YG+ G  ++ + LF S+    
Sbjct: 120 LLTMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L    ++
Sbjct: 227 VIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIE 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      + +E+      PD       I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLQEL----KRPDNIPRDTAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 97/197 (49%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +++ +  F +A ++F EM+ +  +  + +  +++  Y + G   + + +   M K G+
Sbjct: 121 LTMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGI 180

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANN 240

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A  
Sbjct: 241 LIQEMQDRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYE 300

Query: 226 SEDQIEQVTTLVRTMHK 242
               +     L++ + +
Sbjct: 301 RAGLVAHAKRLLQELKR 317



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 76/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++   A D+  YN +IN++G+     +   L   +    + PD V++ + L  
Sbjct: 64  ISIFSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   + +   L +F EM +  C  D  T  ++I         ++   L  +M K
Sbjct: 124 YVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRK 177



 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 72/174 (41%), Gaps = 11/174 (6%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN   +  I SI+        A  +F++++  GI      +  ++ AY + G VA  + +
Sbjct: 252 PNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRL 311

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + ++ +    PD    ++ +++    G+ E+   V     +     DI+ +  +IN++ +
Sbjct: 312 LQELKR----PDNIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVKDITVFERMINLFSK 367

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
                 +  +F  +      P        L AY +   + +   ++ EM D GC
Sbjct: 368 HKKYPNVVEVFDKMRGLGYFPHSNVIALVLNAYGKLHEFDKANSVYMEMQDEGC 421


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 83/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  + E+MK + I      +  LL  Y K G  A+   V ++M + G++ DT   NS
Sbjct: 138 YEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNS 197

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+ G+ + +  ++  M K   A  + TY+ LI+IY + G       ++       
Sbjct: 198 LINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESG 257

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LKPDVV ++S +   ++  L    L +  +M + G  P+  T   +I A
Sbjct: 258 LKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDA 306



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 7/159 (4%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            V E MK  G+ PT  S+  ++ A  K G ++    G   QM K GL PD    NS+L  
Sbjct: 2   GVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAA 61

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
             R+G  E    V   M       DI TYN  I+   + G +E    +   + AK +KP+
Sbjct: 62  CSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPN 121

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEM------IDAGCY 211
           VVT+++ +  YS+ + Y   L++ E+M      +D  CY
Sbjct: 122 VVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCY 160



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 35/222 (15%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP------ 107
           +  DA AVF+EM  LGI   + ++   + A  K GN+     V+  M   G+KP      
Sbjct: 67  HLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYS 126

Query: 108 -----------------------------DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
                                        D    N++L +Y + G++ ++  V   ME+ 
Sbjct: 127 TLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEEL 186

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               D  TYN LIN YG+ G ++ +  L Q +  + + P V+T+++ +  YS+  ++   
Sbjct: 187 GIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDA 246

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             ++ +  ++G  PD       I   +    IE   +L+  M
Sbjct: 247 FNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDM 288



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 45/190 (23%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + ++M++ G+ P++ ++  L+  YSK G       V     +SGLKPD  + +S ++   
Sbjct: 214 LVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLA 273

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR--------------------GGFI 160
           + G  E    +L  M +     ++ TYN +I+ +G+                    GG I
Sbjct: 274 KNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQI 333

Query: 161 EKMEG-------------------------LFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
            ++                           LFQ +  + ++P+VVT+++ L A SR   +
Sbjct: 334 VRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSF 393

Query: 196 RRCLEIFEEM 205
                + E++
Sbjct: 394 EDAALLLEQL 403



 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKME-GLFQSLPAKRLKPDVVTWTSRLAAY 189
           VL +M+         +YN +I+  G+GG   +   G F+ +    L PD  T+ S LAA 
Sbjct: 3   VLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAAC 62

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           SR         +F+EMI  G   D  T    I A
Sbjct: 63  SRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDA 96


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 4/154 (2%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           L+L AY +  ++AK   +  +M  +G++P+ F    ML      G+    E++ +   K 
Sbjct: 315 LMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKN 374

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            + +D+    +LI++Y + G+++K + +   +  K    DVV+WTS +A Y + +  +  
Sbjct: 375 GFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEK----DVVSWTSMIAGYVQHEFCKEA 430

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           LE F+EM   G +PD       ISAC+    + Q
Sbjct: 431 LETFKEMQACGIWPDNIGLASAISACAGIKAVHQ 464



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 7/160 (4%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L++ +++ G+  +  G+ ++M  SGL PD+  I S+L     +G   K +++ + + K  
Sbjct: 215 LISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAG 274

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            + D      L+++Y + G IE+   +F S      + +VV W   L AY +     +  
Sbjct: 275 MSLDYIMEGSLLDLYVKSGDIEEALQIFDSGD----RTNVVLWNLMLVAYGQIDDLAKSF 330

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQI---EQVTTL 236
           +IF  M+ AG  P+  T   ++  C+   +I   EQ+ +L
Sbjct: 331 DIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSL 370



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  ++ EM R G+ PT      +L+A +KT        +  Q++K G   +TFV N+++
Sbjct: 126 EAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALI 185

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +LY R   F   + V   M       D  T+N LI+ + + G  ++  G+F  +    L 
Sbjct: 186 SLYLRCRSFRLADRVFCDM----LYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLS 241

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           PD VT  S LAA S     R+  ++   ++ AG
Sbjct: 242 PDSVTIASLLAACSAVGDLRKGKQLHSYLLKAG 274



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 8/169 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFEE+          S + +L+ Y++ G   +   +  +MH+SG+ P  +V++S+L+
Sbjct: 96  ARRVFEELS----VRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILS 151

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +   F+    +   + K  + ++    N LI++Y R       + +F  +    L  
Sbjct: 152 ACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDM----LYC 207

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           D VT+ + ++ +++     R L IF+EM  +G  PD  T   L++ACS+
Sbjct: 208 DSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSA 256



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 4/134 (2%)

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M   G+ PD   + S ++    +    +  ++   +    Y+AD+S +N L+ +Y R G
Sbjct: 436 EMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCG 495

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             ++    F+++  K    + +TW   ++ +++  LY   L++F +M  AG   +  T  
Sbjct: 496 ISKEAFSSFEAIEHK----EGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFV 551

Query: 219 VLISACSSEDQIEQ 232
             ISA ++   I+Q
Sbjct: 552 SSISASANLADIKQ 565



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 67/125 (53%), Gaps = 4/125 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM+  G++P   +   LL A S  G++ K + + + + K+G+  D  +  S+L+
Sbjct: 228 ALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLD 287

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           LY + G  E+  ++  + ++     ++  +N+++  YG+   + K   +F  + A  ++P
Sbjct: 288 LYVKSGDIEEALQIFDSGDR----TNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRP 343

Query: 178 DVVTW 182
           +  T+
Sbjct: 344 NKFTY 348



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 11/196 (5%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S  + +A  VF +M + G    + + +  ++A +   ++ + + +  ++ K+G   +
Sbjct: 522 FAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSE 581

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI---YGRGGFIEKMEG 165
           T + N++++LYG+ G  E  +     M K +      ++N +I     +GRG  +E ++ 
Sbjct: 582 TEISNALISLYGKCGSIEDAKMDFFEMTKRNEV----SWNTIITCCSQHGRG--LEALD- 634

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISAC 224
           LF  +  + LKP  VT+   L A S   L    L  F+ M +  G +P       ++   
Sbjct: 635 LFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDIL 694

Query: 225 SSEDQIEQVTTLVRTM 240
               Q+++    V  M
Sbjct: 695 GRAGQLDRAKRFVEEM 710



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           N+LI++Y + GF+ +   +F+ L  +    D V+W + L+ Y++  L    + ++ EM  
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVR----DNVSWVAVLSGYAQNGLGEEAVRLYREMHR 136

Query: 208 AGCYPDGGTAKVLISACSSED 228
           +G  P       ++SAC+  +
Sbjct: 137 SGVVPTPYVLSSILSACTKTE 157


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 8/180 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+E +    +  + S   ++TA S+  +      +  QM + GL+PD+FV++S+LN   
Sbjct: 466 VFKESR----SDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACT 521

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            L  +E+ ++V   + K  + +D+   N L+  Y + G IE  +  F  LP +     +V
Sbjct: 522 SLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPER----GIV 577

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +W++ +   ++    +R L++F  M+D G  P+  T   ++SAC+    ++       +M
Sbjct: 578 SWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESM 637



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 4/169 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+E   +G      S   +++AY K        GV  +M  SG +P+ F  + ++
Sbjct: 153 EARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVV 212

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N        E   +V  A+ +  Y  D+ T N L+++Y + G IE    +F+ +PA    
Sbjct: 213 NACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPA---- 268

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            DVV+W + ++         R LE+  +M  +G  P+  T   ++ AC+
Sbjct: 269 ADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACA 317



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A AVF+E+      P   S   L+TAYS  G           M   G+  + F +  +
Sbjct: 54  SAARAVFDEIP----DPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVV 109

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L     + +F      L    +     D+   N L+ +YG  G +++   +F        
Sbjct: 110 LKCAPDV-RFGAQVHALAVATR--LVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGG 166

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE---Q 232
           + + V+W + ++AY +       + +F EM+ +G  P+      +++AC+    +E   Q
Sbjct: 167 ERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQ 226

Query: 233 V-TTLVRTMH-KDMKTA 247
           V   +VRT + KD+ TA
Sbjct: 227 VHGAVVRTGYEKDVFTA 243



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           QM  SGL P+ F ++S+L      G F    ++   M K     D      L+++Y + G
Sbjct: 296 QMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHG 355

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-- 216
           F++    +F  +P    + D++ W + ++  S    +   L +F  M   G   D     
Sbjct: 356 FLDDARKVFDFMP----RRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTT 411

Query: 217 -AKVLISACSSE 227
            A VL S  SSE
Sbjct: 412 LASVLKSTASSE 423



 Score = 40.4 bits (93), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 10/181 (5%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT--FV 111
           +  DA  VF+ M R  +         L++  S  G   +   + ++M K GL  D     
Sbjct: 356 FLDDARKVFDFMPRRDLILWNA----LISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTT 411

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           + S+L             +V    EK    +D    N LI+ Y + G ++    +F+   
Sbjct: 412 LASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFK--- 468

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            +    D+++ T+ + A S+       +++F +M+  G  PD      L++AC+S    E
Sbjct: 469 -ESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYE 527

Query: 232 Q 232
           Q
Sbjct: 528 Q 528


>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Glycine max]
          Length = 626

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 7/219 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y     AV+EEM RLGI     +  ++     K G+  K    +++M + G +PD    N
Sbjct: 228 YIGQCWAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYN 287

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y +  + E    +   M       ++ T+ +L+N     G +++   LF  +  +
Sbjct: 288 TLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMVHR 347

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + PDVV++ + ++ Y R+   + C  +  EMI  G  PD  T ++++   + + ++   
Sbjct: 348 GIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVTCRLIVEGFARDGKLLSA 407

Query: 234 TTLVRTMHK-------DMKTALPIYFNLYGEKGVARSNL 265
              V  + +       D+   L +   + G    ARS L
Sbjct: 408 LNTVVELKRFRIKIPEDLYDYLIVALCIEGRPFAARSFL 446



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 83/181 (45%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           A F         P + +   LL+  S+   + +C  V  +M + G+  + +  N M ++ 
Sbjct: 199 ATFRRNIEACFIPNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHVL 258

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G  +K+   L  ME+  +  D+ TYN L+N Y +   +E    L++ +  + + P++
Sbjct: 259 CKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNL 318

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +T T  +     +   +   ++F +M+  G  PD  +   L+S    E +++   +L+  
Sbjct: 319 ITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHE 378

Query: 240 M 240
           M
Sbjct: 379 M 379



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/217 (18%), Positives = 92/217 (42%), Gaps = 35/217 (16%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +F +M   GI P + S+  L++ Y + G +  C  ++++M  +G+ PD+     ++
Sbjct: 336 EAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVTCRLIV 395

Query: 117 NLYGRLGQF------------------EKMEEVLTA-----------------MEKGSYA 141
             + R G+                   E + + L                   + +  Y 
Sbjct: 396 EGFARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGRPFAARSFLLRISQDGYM 455

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
             I+TYN L+    +   +E+   L   +  + +  ++V + + ++   R         +
Sbjct: 456 PKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNRTLEAEGL 515

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
            EEM+ +G  PD   ++ LI+    E+++++  +L++
Sbjct: 516 LEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLK 552



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 87/200 (43%), Gaps = 7/200 (3%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ AY K G V K      +  ++   P+    N +L+   R     +   V   M + 
Sbjct: 183 MLIKAYVKAGMVEKGLATFRRNIEACFIPNVIACNCLLSGLSRFNYIGQCWAVYEEMGRL 242

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               +  T+NI+ ++  + G  +K+      +  +  +PD+VT+ + + +Y +K+     
Sbjct: 243 GIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDA 302

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNLY-- 255
             +++ M   G  P+  T  VL++    E ++++   L   M H+ +   +  Y  L   
Sbjct: 303 FYLYKIMYIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSG 362

Query: 256 ----GEKGVARSNLGQYIGN 271
               G+  + RS L + IGN
Sbjct: 363 YCREGKMQMCRSLLHEMIGN 382



 Score = 40.8 bits (94), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 10/143 (6%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI----------STYNILINIYGRGGFI 160
           V +  +NL   L Q  ++E V      G Y   +          + +++LI  Y + G +
Sbjct: 135 VFSHAMNLLSELIQLVEVEGVCVPPNDGIYENLVECTEDCNWNPAIFDMLIKAYVKAGMV 194

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           EK    F+        P+V+     L+  SR     +C  ++EEM   G + +  T  ++
Sbjct: 195 EKGLATFRRNIEACFIPNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIM 254

Query: 221 ISACSSEDQIEQVTTLVRTMHKD 243
                 +   ++VT  +  M ++
Sbjct: 255 THVLCKDGDTDKVTRFLDKMEEE 277


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 88/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   GI PT+ ++  L+    K   + + + + +++ + GL PD  V N++++
Sbjct: 410 AFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALID 469

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  ++  ++L  M+      D  TYN L+  Y R G +E+   L   +  + +KP
Sbjct: 470 GHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKP 529

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +++ + ++ YS++   +    + +EM+  G  P   T   LI       + E    L+
Sbjct: 530 DHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELL 589

Query: 238 RTM 240
           + M
Sbjct: 590 KEM 592



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 91/185 (49%), Gaps = 2/185 (1%)

Query: 43  TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T NLF+    +     DA  + +EM+  G+ P   +H +L+  Y + G+  +  G++++M
Sbjct: 358 TYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEM 417

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
              G++P      S++ + G+  + ++ + + + +++     DI  +N LI+ +   G I
Sbjct: 418 VGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNI 477

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++   L + +   ++ PD +T+ + +  Y R+       ++ +EM   G  PD  +   L
Sbjct: 478 DRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTL 537

Query: 221 ISACS 225
           IS  S
Sbjct: 538 ISGYS 542



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 90/193 (46%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +T  ++V        +A A+F ++++ G+ P +     L+  +   GN+ +   ++ 
Sbjct: 426 LVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLK 485

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M    + PD    N+++  Y R G+ E+  ++L  M++     D  +YN LI+ Y + G
Sbjct: 486 EMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRG 545

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            ++    +   +      P ++T+ + +    + +      E+ +EM+  G  PD  T  
Sbjct: 546 DMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYL 605

Query: 219 VLISACSSEDQIE 231
            +I A  + D +E
Sbjct: 606 SIIEAMETVDDLE 618



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 85/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+A  +EM   GI  ++ ++ L + A    G +   + +I +M + G+ PD    N ++N
Sbjct: 340 AYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILIN 399

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R G  ++   +L  M        + TY  LI + G+   +++ + LF  +  + L P
Sbjct: 400 GYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLP 459

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++ + + +  +       R  ++ +EM +    PD  T   L+     E ++E+   L+
Sbjct: 460 DIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLL 519

Query: 238 RTMHK 242
             M +
Sbjct: 520 DEMKR 524



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +F+ MK  G+ P   ++   ++   K G + +  G+I +M + GL P+    N+
Sbjct: 267 FQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNA 326

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y   G  +K       M      A + TYN+ I+     G +   + + + +  K 
Sbjct: 327 LIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKG 386

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PD VT    +  Y R    +R   + +EM+  G  P   T   LI      +++++  
Sbjct: 387 MMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEAD 446

Query: 235 TLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
            L   + ++      I FN   +   A  N+ +
Sbjct: 447 ALFSKIQQEGLLPDIIVFNALIDGHCANGNIDR 479



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 8/215 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ EM R+ I  ++ +  +++    K G + K +  I  M   G+KP+    N++++
Sbjct: 200 AWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIH 259

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G+F++   +   M+      D  TYN  I+   + G +E+  GL   +    L P
Sbjct: 260 GHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVP 319

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + VT+ + +  Y  K    +     +EMI  G      T  + I A   E ++     ++
Sbjct: 320 NAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMI 379

Query: 238 RTMHKDMKTALP------IYFNLYGEKGVARSNLG 266
           + M +  K  +P      I  N Y   G A+   G
Sbjct: 380 KEMRE--KGMMPDAVTHNILINGYCRCGDAKRAFG 412



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 81/174 (46%), Gaps = 1/174 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A   F  +K  G  P +++   +L+ + K         +  +M +  ++   +  N M
Sbjct: 163 NEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIM 222

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N+  + G+ +K +E +  ME      ++ TYN +I+ +   G  ++   +FQ++  K L
Sbjct: 223 INVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGL 282

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
           +PD  T+ S ++   ++        +  +M++ G  P+  T   LI   C+  D
Sbjct: 283 EPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGD 336


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 2/200 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      +EE+   G   ++    +L+  + K G++   + V + + K GL+P     N
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + +AM       D+ TY++LIN   +   ++   GLF  +  K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVK 241

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + +       +EI+++M+     PD  T   LI     +  ++Q 
Sbjct: 242 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 234 TTLVRTMHKDMKTALPIYFN 253
             L+  M   MK   P  F 
Sbjct: 302 HDLIDEM--SMKGLKPDKFT 319



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/197 (19%), Positives = 87/197 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F+EM   G+ P   +   L+  + K G V     +  QM    L PD    N+++ 
Sbjct: 231 ANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 290

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  ++  +++  M       D  TY  LI+   + G ++      + +  + ++ 
Sbjct: 291 GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V +T+ ++   ++       ++  EM+  G  PD GT  ++++    +  + + + L+
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLL 410

Query: 238 RTMHKDMKTALPIYFNL 254
           + M +D      + +N+
Sbjct: 411 KEMQRDGHAPSVVTYNV 427



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 76/166 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M    + P + ++  L+    K G++ +   +I++M   GLKPD F   ++++
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 325

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  +   E    M + +   D   Y  LI+   + G     E + + + +  LKP
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP 385

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D  T+T  +  + +K    +  ++ +EM   G  P   T  VL++ 
Sbjct: 386 DTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M  LG+ P   +   LL + +K+    + + +  Q+ K G   D ++  S++++Y + G+
Sbjct: 94  MVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGR 153

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E  ++V    +K S+  D+ +Y  LI  Y   G IE    +F  +P K    DVV+W +
Sbjct: 154 LEDAQKV---XDKSSHR-DVVSYTALITGYASRGXIESAHKMFDEIPVK----DVVSWNA 205

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            ++ Y+    Y+  LE+F++M+     PD  T   ++SAC+    IE
Sbjct: 206 XISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIE 252



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +F+E+        + S    ++ Y++TGN  +   +  +M K+ ++PD   + ++L+
Sbjct: 188 AHKMFDEIP----VKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLS 243

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  E   +V + +    +  ++   N LI++Y + G +E   GLFQ L  K    
Sbjct: 244 ACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNK---- 299

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           DV++W + +  Y+   LY+  L +F++M+ +G  P+  T   ++SAC+    I+
Sbjct: 300 DVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAID 353



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 10/154 (6%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG----SYAADISTYNILI 151
           +   M +SG KP+   + S+L+    LG  +    +   ++K     + A+ + T   LI
Sbjct: 323 LFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LI 380

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           ++Y + G IE  + +F S+    L   + +W + +  ++         +IF  M   G  
Sbjct: 381 DMYAKCGDIEAAQQVFDSM----LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIE 436

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
           PD  T   L+SACS    ++    + R+M +D K
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYK 470



 Score = 40.4 bits (93), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M    +  ++ S   ++  ++  G       + ++M K+G++PD      +L+
Sbjct: 392 AQQVFDSM----LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLS 447

Query: 118 LYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                G  +    +  +M +       +  Y  +I++ G  G  ++ E +  ++    ++
Sbjct: 448 ACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTM---EME 504

Query: 177 PDVVTWTSRLAA 188
           PD V W S L A
Sbjct: 505 PDGVIWCSLLKA 516


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 90/196 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+  G  P + ++ +L+    K G + +    +N M   G +P+    N +L 
Sbjct: 266 AMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILR 325

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++   E+ L  M +   +  + T+NILIN   R G I +   + + +P     P
Sbjct: 326 SMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTP 385

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +++   L A  + K   R +E  + M+  GCYPD  T   L++A   + +++    ++
Sbjct: 386 NSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 445

Query: 238 RTMHKDMKTALPIYFN 253
             +     + + I +N
Sbjct: 446 NQLGSKGCSPVLITYN 461



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 5/180 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E+M   G  P + +   L+    KTG   K   V+  +  SG  PD    N +++ Y +
Sbjct: 133 LEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCK 192

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYN-ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            G+     ++L  M   S + D+ TYN IL  +   G   E ME L + +  +   PDV+
Sbjct: 193 TGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQM-QRECYPDVI 248

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T  + A  ++    + +++ +EM D GC PD  T  VLI+    E ++++    +  M
Sbjct: 249 TYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHM 308



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 85/201 (42%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L + P L           A    + M   G  P + ++  LLTA  K G V     ++NQ
Sbjct: 388 LSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 447

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +   G  P     N++++   ++G+ +   ++L  M+      DI TY+ L+    R G 
Sbjct: 448 LGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGK 507

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++    F  L    +KP+ +T+ S +    + +   R ++    M+  GC P   +  +
Sbjct: 508 VDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMI 567

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI   + E   ++   L+  +
Sbjct: 568 LIEGLAYEGLAKEALELLNEL 588



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 80/176 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA     EM R G +P++ +  +L+    + G + +   V+ +M + G  P++   N +L
Sbjct: 335 DAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLL 394

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  + E+  E L  M       DI TYN L+    + G ++    +   L +K   
Sbjct: 395 HALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCS 454

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           P ++T+ + +   S+       +++ +EM   G  PD  T   L+   S E ++++
Sbjct: 455 PVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDE 510



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 98/233 (42%), Gaps = 10/233 (4%)

Query: 43  TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++  F   I F         A  V E+M + G TP   S+  LL A  K   + +   
Sbjct: 349 SPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIE 408

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            ++ M   G  PD    N++L    + G+ +   E+L  +     +  + TYN +I+   
Sbjct: 409 YLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLS 468

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  +    L   +  K LKPD++T+++ +   SR+      +  F ++ + G  P+  
Sbjct: 469 KVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAI 528

Query: 216 T-AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
           T   +++  C +   +  +  L   + +  K     Y  L   +G+A   L +
Sbjct: 529 TYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILI--EGLAYEGLAK 579



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 5/198 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V E ++  G  P + ++ +L++ Y KTG +     ++++M  S   PD    N++L 
Sbjct: 164 ATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVS---PDVVTYNTILR 220

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ ++  EVL    +     D+ TY ILI    +   + +   L   +  K  KP
Sbjct: 221 TLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKP 280

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSSEDQIEQVTTL 236
           DVVT+   +    ++      +     M   GC P+  T  +++ S CS+   ++    L
Sbjct: 281 DVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFL 340

Query: 237 VRTMHKDMKTALPIYFNL 254
              + K    ++ + FN+
Sbjct: 341 AEMIRKGCSPSV-VTFNI 357



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 3/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A      M   G  P + +H ++L +   TG     E  + +M + G  P     N 
Sbjct: 298 LDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNI 357

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   R G   +  +VL  M +     +  +YN L++   +   +E+       + ++ 
Sbjct: 358 LINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRG 417

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD+VT+ + L A  +       +EI  ++   GC P   T   +I   S   + +   
Sbjct: 418 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAI 477

Query: 235 TLVRTMH-KDMKTALPIYFNLYGEKGVAR 262
            L+  M  K +K  +  Y  L G  G++R
Sbjct: 478 KLLDEMKGKGLKPDIITYSTLVG--GLSR 504


>gi|359484961|ref|XP_002273494.2| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Vitis vinifera]
          Length = 609

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 98/189 (51%), Gaps = 4/189 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V++E+   G  P   ++  ++  Y +    +K E + ++M K G        +SM+ 
Sbjct: 384 AAKVYDELILQGCEPGQVTYASIINVYCRMELYSKAEMMFSEMEKKGFNKCVVAYSSMVV 443

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YG+ G+  +   ++  M++     ++  YN L++++GR   + ++E L++ +  K++ P
Sbjct: 444 MYGKTGRLREAMRLVAKMKERGCKPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVP 503

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++TS ++AYS+   +  C+  + E    G   D   A +++   S   +++++  L+
Sbjct: 504 DRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRVIAGIMVGIFSKSGRVDELVKLL 563

Query: 238 RTMHKDMKT 246
               +DMKT
Sbjct: 564 ----QDMKT 568



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 60/107 (56%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A  +F EM++ G    + ++  ++  Y KTG + +   ++ +M + G KP+ +V NS
Sbjct: 416 YSKAEMMFSEMEKKGFNKCVVAYSSMVVMYGKTGRLREAMRLVAKMKERGCKPNVWVYNS 475

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           +++++GR+    ++E++   M++     D  +Y  +I+ Y + G  E
Sbjct: 476 LMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFE 522



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 8/206 (3%)

Query: 42  HTPNLFVFIFSIYFSDAH-----AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
             P +F+ +  +Y  +        + + MK + I  +      ++  ++K   +     V
Sbjct: 328 RDPEVFLKLVLMYVEEGLMERTIEIVKAMKNVKIRVSDCIFCAIVNGFAKKRGLRAAAKV 387

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            +++   G +P      S++N+Y R+  + K E + + MEK  +   +  Y+ ++ +YG+
Sbjct: 388 YDELILQGCEPGQVTYASIINVYCRMELYSKAEMMFSEMEKKGFNKCVVAYSSMVVMYGK 447

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G + +   L   +  +  KP+V  + S +  + R K  R+  ++++EM      PD  +
Sbjct: 448 TGRLREAMRLVAKMKERGCKPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVS 507

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK 242
              +ISA S     E   T +R  H+
Sbjct: 508 YTSVISAYSKAGDFE---TCMRFYHE 530



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/207 (18%), Positives = 84/207 (40%), Gaps = 38/207 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK---------------------- 92
           FS   AV++ MK  G+ P  +S+  ++ AY K  +  K                      
Sbjct: 203 FSSTIAVYDRMKSAGVVPNSESYYRIMEAYIKIRDYEKVVTLFQEFESRKIDSSPFSTQI 262

Query: 93  ----CEGV------------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
               CE +               M K G+  D+ V +S++  +  + + +  EE+    E
Sbjct: 263 YRILCESLGKMGRAFEALEFFRDMTKKGILEDSAVYSSLICSFASIREVKVAEELFREAE 322

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           +     D   +  L+ +Y   G +E+   + +++   +++     + + +  +++K+  R
Sbjct: 323 EKKILRDPEVFLKLVLMYVEEGLMERTIEIVKAMKNVKIRVSDCIFCAIVNGFAKKRGLR 382

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISA 223
              ++++E+I  GC P   T   +I+ 
Sbjct: 383 AAAKVYDELILQGCEPGQVTYASIINV 409



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 52/116 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
              +++EMKR  + P   S+  +++AYSK G+   C    ++   +G   D  +   M+ 
Sbjct: 489 VEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRVIAGIMVG 548

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++ + G+ +++ ++L  M+      D   Y   +N     G   +   L +S   K
Sbjct: 549 IFSKSGRVDELVKLLQDMKTEGTGLDERLYRSALNALRDAGLQMQARWLQESFDTK 604



 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 64/153 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F +M + GI      +  L+ +++    V   E +  +  +  +  D  V   ++
Sbjct: 278 EALEFFRDMTKKGILEDSAVYSSLICSFASIREVKVAEELFREAEEKKILRDPEVFLKLV 337

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +Y   G  E+  E++ AM+          +  ++N + +   +     ++  L  +  +
Sbjct: 338 LMYVEEGLMERTIEIVKAMKNVKIRVSDCIFCAIVNGFAKKRGLRAAAKVYDELILQGCE 397

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           P  VT+ S +  Y R +LY +   +F EM   G
Sbjct: 398 PGQVTYASIINVYCRMELYSKAEMMFSEMEKKG 430


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 90/188 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F++M   G  P   ++ ++L+ + + GN+A+C  +  +M +    PD  + N+
Sbjct: 238 MDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNA 297

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++  +  + +   +VL  M K     D+ TYNIL++   +   ++K   LF ++    
Sbjct: 298 VIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 357

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD+V+++  L    +         +F+ MI+    PD  T  +L+       ++++  
Sbjct: 358 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAK 417

Query: 235 TLVRTMHK 242
            L+  M +
Sbjct: 418 DLLDVMSE 425



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 85/187 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DAH V EEM ++G  P + ++ +LL    KT  V K   + + M  +G  PD    + +
Sbjct: 309 DDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVV 368

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LN   +  +      +   M +     D+ T+NIL++   + G +++ + L   +    +
Sbjct: 369 LNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNV 428

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD VT T+ +    R K     + +F+ M++ G   D     ++++    E ++ Q   
Sbjct: 429 LPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALL 488

Query: 236 LVRTMHK 242
             ++M K
Sbjct: 489 FFKSMVK 495



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 98/212 (46%), Gaps = 3/212 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK--PDTFVIN 113
           S+A   F+ M   G +P + ++  LL A  K G VA+  G+   M  +  K  PD    N
Sbjct: 132 SEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYN 191

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + R+ + ++  ++   +    Y  D  TYN ++    R   +++ E +F+ +   
Sbjct: 192 TLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDS 251

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P+  T++  L+ + R     RCLE++EEM +    PD      +I       +++  
Sbjct: 252 GCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDA 311

Query: 234 TTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
             ++  M K       + +N+  + G+ ++NL
Sbjct: 312 HKVLEEMSKIGAVPDVVTYNILLD-GLCKTNL 342



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 1/184 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G  P + ++  +++   KTG V +   ++ +M + G+ PD      +++   R G+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            ++ +E+   M +   +A+   YN LIN   +   IE+   L + + +K  +PD +T+ +
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KD 243
            L+   R        + F+ M   G  PD      L+ A   E ++ +   L +TM   D
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 244 MKTA 247
            K A
Sbjct: 181 RKVA 184



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 87/187 (46%), Gaps = 2/187 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  + EEM   G+ P + ++ +++    + G V + + + ++M + G   +T   N++
Sbjct: 27  TEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNAL 86

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +    E+  ++L  M    Y  D  TYN +++   R G + + +  F S+P++  
Sbjct: 87  INGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGY 146

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFE--EMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            PDVV +   L A  ++        +F+  +M D    PD  T   LI      ++ ++ 
Sbjct: 147 SPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEA 206

Query: 234 TTLVRTM 240
             L + +
Sbjct: 207 MKLFKDV 213



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 89/199 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+++   G  P   ++  +L   ++  N+ + E +  +M  SG  P+    + +
Sbjct: 204 DEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIV 263

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ + R+G   +  E+   M +  ++ D+   N +I++  +   ++    + + +     
Sbjct: 264 LSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGA 323

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDVVT+   L    +  L  +  E+F  M+D GC PD  +  V+++     +++     
Sbjct: 324 VPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARV 383

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L   M +       + FN+
Sbjct: 384 LFDRMIERKLVPDVVTFNI 402



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 77/177 (43%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +M    + P + ++  L+  + +     +   +   +   G  PDT   NS+L    R  
Sbjct: 177 DMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKS 236

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             ++ EE+   M     A + +TY+I+++ + R G + +   L++ +  KR  PDV+   
Sbjct: 237 NMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCN 296

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + +    + K      ++ EEM   G  PD  T  +L+      + +++   L  TM
Sbjct: 297 AVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTM 353



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 85/188 (45%), Gaps = 2/188 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+ M    + P + +  +L+    K G + + + +++ M +  + PD     +++
Sbjct: 380 DARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLM 439

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK--R 174
           +   R  + ++   +   M +    AD+  +NI++    R G + +    F+S+      
Sbjct: 440 HGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGE 499

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDVVT+T+ + A        + ++ F++M  +GC PD      L++    + +  Q  
Sbjct: 500 FSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQAD 559

Query: 235 TLVRTMHK 242
            L + M +
Sbjct: 560 RLTQAMKE 567


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 74/156 (47%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G   K   VI +M   G  PDT   + ++       + EK  ++   M++   A D+  Y
Sbjct: 201 GKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVY 260

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
             LI+ + + GFIE+    F  +      P+VVT+T+ + AY + +   +  E++E M+ 
Sbjct: 261 TTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLS 320

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            GC P+  T   LI       +IE+ + + + M K+
Sbjct: 321 KGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKE 356



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 101/219 (46%), Gaps = 9/219 (4%)

Query: 31  HFMLINFLLLQHTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA 83
           HF +++     + PN+F +         +    +A  + + M   G  P    +  L+  
Sbjct: 366 HFRVVDGA--SNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDG 423

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
             K G + + + V   M + G  P+ +  +S+++   +  + +   +VL+ M + S A +
Sbjct: 424 CCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPN 483

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           +  Y  +I+   + G  ++   L   +  K   P+VVT+T+ +  + +     +CLE+ +
Sbjct: 484 VVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQ 543

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +M   GC P+  T +VLI+ C S   +++   L+  M +
Sbjct: 544 QMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQ 582



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 85/200 (42%), Gaps = 17/200 (8%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EMKR GI P +  +  L+ ++ K G + +     ++M + G  P+     ++++
Sbjct: 241 AFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIH 300

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-- 175
            Y +  +  K  EV   M       +I TY  LI+   + G IEK   +++ +  + +  
Sbjct: 301 AYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEI 360

Query: 176 ---------------KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
                          +P+V T+ + +    +    +   ++ + M   GC P+      L
Sbjct: 361 PDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDAL 420

Query: 221 ISACSSEDQIEQVTTLVRTM 240
           I  C    ++++   +  TM
Sbjct: 421 IDGCCKAGKLDEAQEVFTTM 440



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 71/151 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A+ V  EM   G  P   ++  ++        V K   +  +M ++G+ PD +V  +
Sbjct: 203 FEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTT 262

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G  E+       ME+   A ++ TY  LI+ Y +   + K   +++ + +K 
Sbjct: 263 LIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKG 322

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             P++VT+T+ +    +     +  +I++ M
Sbjct: 323 CTPNIVTYTALIDGLCKAGKIEKASQIYKIM 353



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 10/191 (5%)

Query: 43  TPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK----- 92
           +P +F  +   Y     ++ A+ + ++M + G  P    + +L+     +    K     
Sbjct: 111 SPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDL 170

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            E    +M ++G+  +   I++       +G+FEK   V+  M    +  D STY+ +I 
Sbjct: 171 AEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIG 230

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
                  +EK   LFQ +    + PDV  +T+ + ++ +     +    F+EM   GC P
Sbjct: 231 YLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAP 290

Query: 213 DGGTAKVLISA 223
           +  T   LI A
Sbjct: 291 NVVTYTALIHA 301



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 24/204 (11%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            P+++V+   I       +   A   F+EM+R G  P + ++  L+ AY K+  V+K   
Sbjct: 254 APDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANE 313

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK-----------------G 138
           V   M   G  P+     ++++   + G+ EK  ++   M+K                  
Sbjct: 314 VYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGA 373

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           S   ++ TY  L++   +   +++   L +S+  +  +P+ V + + +    +       
Sbjct: 374 SNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEA 433

Query: 199 LEIFEEMIDAGCYPDGGTAKVLIS 222
            E+F  M++ G  P+  T   LI 
Sbjct: 434 QEVFTTMLECGYDPNVYTYSSLID 457



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/192 (18%), Positives = 84/192 (43%), Gaps = 17/192 (8%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ +T  +  ++ S   S A+ V+E M   G TP + ++  L+    K G + K   +  
Sbjct: 292 VVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYK 351

Query: 99  QMHKSGLK-----------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141
            M K  ++                 P+ F   ++++   +  Q ++  ++L +M      
Sbjct: 352 IMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCE 411

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            +   Y+ LI+   + G +++ + +F ++      P+V T++S +    + K     L++
Sbjct: 412 PNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKV 471

Query: 202 FEEMIDAGCYPD 213
             +M++  C P+
Sbjct: 472 LSKMLENSCAPN 483



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 15/199 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A      M+     P + ++ +LL        + +C+ +++ M   G  P   + NS
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME------GLFQ 168
           +++ Y R G +    ++L  M +         YNILI     GG     E       L +
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILI-----GGICSSEEPGKDVLDLAE 172

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKL----YRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               + L+  VV     ++ +SR       + +   +  EM+  G  PD  T   +I   
Sbjct: 173 KAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYL 232

Query: 225 SSEDQIEQVTTLVRTMHKD 243
            +  ++E+   L + M ++
Sbjct: 233 CNASKVEKAFQLFQEMKRN 251



 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G + D F +    +   + G   K  E L+ +EK  +  D   Y  +I+       
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSG---KWREALSLLEKEEFVPDTVLYTKMISGLCEASL 57

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
            E+       + A    P+V+T+   L     K+   RC  I   MI  GCYP       
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 220 LISA-CSSED 228
           L+ A C S D
Sbjct: 118 LVHAYCRSGD 127



 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 1/152 (0%)

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++ + K    PDT +   M++       FE+  + LT M   S   ++ TY IL+     
Sbjct: 30  LSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLN 89

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              + + + +   +  +   P    + S + AY R   Y    ++ ++M+  GC P    
Sbjct: 90  KEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVV 149

Query: 217 AKVLISA-CSSEDQIEQVTTLVRTMHKDMKTA 247
             +LI   CSSE+  + V  L    + +M  A
Sbjct: 150 YNILIGGICSSEEPGKDVLDLAEKAYGEMLEA 181



 Score = 40.8 bits (94), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/101 (19%), Positives = 47/101 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A+ +   M+  G  P + ++  ++  + K+G V KC  ++ QM   G  P+      +
Sbjct: 501 DEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVL 560

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           +N     G  ++  ++L  M++  +   ++ Y  +I  + R
Sbjct: 561 INHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNR 601


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 26/223 (11%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P   VF   IY         +A   F +M++ G  P + ++  ++    K G +      
Sbjct: 425 PGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSR 484

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             QM   GL PD    N++++ +   G++EK EE+   M       +++T+N +I+   +
Sbjct: 485 FCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFK 544

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY-------SRKKLYRRCLEI-------- 201
            G + +   LF  +P    KP+VV++ + +  Y          KL    L I        
Sbjct: 545 EGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVT 604

Query: 202 ----FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                + M+  G  PD  T K LI +C  + +IE + TL R M
Sbjct: 605 FNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREM 647



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 85/187 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F  M + G  P   ++  LL  Y+  GN+     V + M ++G++P   V N  
Sbjct: 374 AEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIE 433

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y + G+ ++       M++  +  DI  Y  +I+   + G ++     F  +    L
Sbjct: 434 IYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGL 493

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD++T+ + +  ++    + +  E+F EM+D G  P+  T   +I     E ++ +   
Sbjct: 494 SPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARK 553

Query: 236 LVRTMHK 242
           L   M +
Sbjct: 554 LFDLMPR 560



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 3/207 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           ++ S  +++A  + +EM R G  P + ++ +L+    K+G  A+   + N M +SG KP+
Sbjct: 332 YLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPN 391

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
                S+L+ Y   G    M  V   M +         +NI I  Y + G +++    F 
Sbjct: 392 ASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFN 451

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +  +   PD+V +T+ +    +       +  F +MID G  PD  T   LI   +   
Sbjct: 452 KMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHG 511

Query: 229 QIEQVTTLVRTMHKDMKTALPIYFNLY 255
           + E+   L   M   M   +P   N +
Sbjct: 512 KWEKAEELFYEM---MDRGIPPNVNTF 535



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 93/229 (40%), Gaps = 18/229 (7%)

Query: 11  LCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRL-- 68
           LC  +R   + N      P          L  TP++F +   +    A    EE   L  
Sbjct: 189 LCAEKRTSDAMNIVLRRMPE---------LGCTPDVFSYTTLLKGLCAEKKCEEAAELIH 239

Query: 69  -------GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
                     P + S+  ++  + K G+V K   +  +M   G+ P+    NS+++   +
Sbjct: 240 MMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCK 299

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +   +K E VL  M       + +TYN LI+ Y   G   +   + + +     +P+VVT
Sbjct: 300 VQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVT 359

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           ++  +    +  L+    EIF  MI +G  P+  T   L+   ++E  +
Sbjct: 360 YSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNL 408



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 19/171 (11%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA + F +M   G++P + +   L+  ++  G   K E +  +M   G+ P+    NS
Sbjct: 478 LDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNS 537

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN---IYGRGGFIEKM-------- 163
           M++   + G+  +  ++   M +     ++ +YN +I+   I G  G + K+        
Sbjct: 538 MIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIG 597

Query: 164 --------EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
                     L   + +  LKPDVVT  + + +          L +F EM+
Sbjct: 598 LKPTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREML 648



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 2/150 (1%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKGSYAA-DISTYNILINI 153
           V+ +M + G  PD F   ++L       + E+  E++  M E G     ++ +Y  +I+ 
Sbjct: 202 VLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHG 261

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + + G + K   LF  +    + P+VVT  S +    + +   +   + ++MID    P+
Sbjct: 262 FFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPN 321

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             T   LI    S  Q  +   +++ M +D
Sbjct: 322 CTTYNSLIHGYLSSGQWTEAVRILKEMSRD 351


>gi|357140210|ref|XP_003571663.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Brachypodium distachyon]
          Length = 841

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 101/215 (46%), Gaps = 3/215 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + ++A+  F EM   G  P   ++  L++A+ + G V++   +  +M +SGL PD F  N
Sbjct: 540 HVNEAYQAFVEMTGRGFVPNNITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVFTSN 599

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ + + G+ + M +    M       D+ TYN +IN Y     +         + A 
Sbjct: 600 ILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKMLAD 659

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE--DQIE 231
             +PD+ T+   + +     L  R +++ +E++  GC P+  T   L+    S+  D+  
Sbjct: 660 GCEPDIFTYNIWMHSLCNNHLLNRAVKMLDELVAMGCMPNSVTYNTLMDGICSDVLDRAM 719

Query: 232 QVT-TLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            +T  L++   +     + ++F+ + ++G  +  L
Sbjct: 720 ILTGKLIKMAFQPNTVTVNVFFSHFCKQGFGKRAL 754



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 71/152 (46%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +++M ++G+ P   +    ++   +  +V +      +M   G  P+    NS+++ + R
Sbjct: 513 WDDMVKVGVQPDFIAFSAYISGLCRLDHVNEAYQAFVEMTGRGFVPNNITYNSLISAFCR 572

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G   +  ++   M +     D+ T NILI+ + + G ++ M   F  +    L PDVVT
Sbjct: 573 VGYVSEALKLEKKMRQSGLIPDVFTSNILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVT 632

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + + + AY   +     +    +M+  GC PD
Sbjct: 633 YNTIINAYCGAQDMSSAMIFMNKMLADGCEPD 664



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 106/280 (37%), Gaps = 53/280 (18%)

Query: 21  WNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHM 78
           W FN +P    +            N+ +  +S++    DA  + +EM+  G  PT+ ++ 
Sbjct: 237 WRFNVIPDACSY------------NILIKGYSVFGQAGDAFQLLDEMRESGCQPTVVTYN 284

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+      GN+     + ++M K G++ +T   N +++ Y + G+ ++       M+  
Sbjct: 285 ILVNVLCHDGNMVDARRLFDEMVKVGIEANTITFNVLVDGYAKAGRMDEAYAACREMKAR 344

Query: 139 SYAADISTYNIL-INIYGRGGFIEKMEGL--FQSLPAKRLKPDVV-------TWTSRL-- 186
               D  T+NIL    Y  G  ++   G      +   R+  D V        W  RL  
Sbjct: 345 GLVPDCCTFNILSAGAYKFGKAVQLAHGQQELHEMFGSRISADSVDMVVCRLCWDGRLDD 404

Query: 187 ------------------------AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
                                   AAYS++    + LE++  M   G  P   T   LI 
Sbjct: 405 AWKLVCSAIEQGVPVSVAGFNALVAAYSKEGFDEQALEVYSVMNKIGLVPSSPTFNYLIM 464

Query: 223 ACSSEDQIEQVTTLVRTMHKD---MKTALPIYFNLYGEKG 259
              ++ +++    L+  M      + T+  IY + Y   G
Sbjct: 465 GLCNQGRLDDAQLLLEHMICKGYCVGTSFTIYMDSYFRSG 504



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 55/118 (46%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M R  + P   S+ +L+  YS  G       ++++M +SG +P     N ++N+    G 
Sbjct: 236 MWRFNVIPDACSYNILIKGYSVFGQAGDAFQLLDEMRESGCQPTVVTYNILVNVLCHDGN 295

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
                 +   M K    A+  T+N+L++ Y + G +++     + + A+ L PD  T+
Sbjct: 296 MVDARRLFDEMVKVGIEANTITFNVLVDGYAKAGRMDEAYAACREMKARGLVPDCCTF 353



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 2/175 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  + E M   G      S  + + +Y ++GNV       + M K G++PD    ++
Sbjct: 472 LDDAQLLLEHMICKGYC-VGTSFTIYMDSYFRSGNVEGALKCWDDMVKVGVQPDFIAFSA 530

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   RL    +  +    M    +  +  TYN LI+ + R G++ +   L + +    
Sbjct: 531 YISGLCRLDHVNEAYQAFVEMTGRGFVPNNITYNSLISAFCRVGYVSEALKLEKKMRQSG 590

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
           L PDV T    +  + ++       + F +M ++G  PD  T   +I+A C ++D
Sbjct: 591 LIPDVFTSNILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQD 645



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 65/163 (39%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF EM   G  P++     ++  +   G V    G++  M +  + PD    N ++ 
Sbjct: 194 AWKVFVEMTARGPRPSLAIFNAMILGFCHRGLVHIGLGLLGVMWRFNVIPDACSYNILIK 253

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ     ++L  M +      + TYNIL+N+    G +     LF  +    ++ 
Sbjct: 254 GYSVFGQAGDAFQLLDEMRESGCQPTVVTYNILVNVLCHDGNMVDARRLFDEMVKVGIEA 313

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           + +T+   +  Y++            EM   G  PD  T  +L
Sbjct: 314 NTITFNVLVDGYAKAGRMDEAYAACREMKARGLVPDCCTFNIL 356



 Score = 43.5 bits (101), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 68/176 (38%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           L L A+   G  ++   V+  +   G  P    I ++L L  R G+     +V   M   
Sbjct: 145 LALHAFLAAGMASEALVVLAHIRCGGNTPSLSAIAALLRLLFRAGEVRPAWKVFVEMTAR 204

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                ++ +N +I  +   G +    GL   +    + PD  ++   +  YS        
Sbjct: 205 GPRPSLAIFNAMILGFCHRGLVHIGLGLLGVMWRFNVIPDACSYNILIKGYSVFGQAGDA 264

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
            ++ +EM ++GC P   T  +L++    +  +     L   M K    A  I FN+
Sbjct: 265 FQLLDEMRESGCQPTVVTYNILVNVLCHDGNMVDARRLFDEMVKVGIEANTITFNV 320



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 80/197 (40%), Gaps = 3/197 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-FVINSML 116
           A  V+  M ++G+ P+  +   L+      G +   + ++  M   G    T F I   +
Sbjct: 440 ALEVYSVMNKIGLVPSSPTFNYLIMGLCNQGRLDDAQLLLEHMICKGYCVGTSFTI--YM 497

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G  E   +    M K     D   ++  I+   R   + +    F  +  +   
Sbjct: 498 DSYFRSGNVEGALKCWDDMVKVGVQPDFIAFSAYISGLCRLDHVNEAYQAFVEMTGRGFV 557

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ +T+ S ++A+ R       L++ ++M  +G  PD  T+ +LI     E +++ +   
Sbjct: 558 PNNITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVFTSNILIDGFCKEGRLDMMNKR 617

Query: 237 VRTMHKDMKTALPIYFN 253
              M+    T   + +N
Sbjct: 618 FLDMYNSGLTPDVVTYN 634


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  V E+MK  G +P++ ++  ++  Y K G + K + ++ +M    + P+    N 
Sbjct: 245 FQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNI 304

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + R       ++V   M++     ++ TYN LIN     G +++  GL   +    
Sbjct: 305 LIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMG 364

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKP+VVT+ + +  + +KK+ +   E+ +++   G  P+  T   LI A     +++   
Sbjct: 365 LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDD-A 423

Query: 235 TLVRTMHKD 243
            L+R+M  D
Sbjct: 424 FLLRSMMLD 432



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 93/200 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + ++M  +G+ P + ++  L+  + K   + +   +++ + K GL P+    N+
Sbjct: 350 LDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ YG+ G+ +    + + M       ++STYN LI  + R G +++   L + +    
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LK D+VT+   + A  +K   R+ + + +EM + G  P   T   LI     E       
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAAL 529

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            +   M K  + A  + +N+
Sbjct: 530 NVRTLMEKKGRRANIVTYNV 549



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 80/161 (49%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +L +  K G +   E V  +M +  +  +    + ++N   ++G+F+K  +V+  M+   
Sbjct: 200 MLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWG 259

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           ++  + TYN +I+ Y + G + K + L + + AKR+ P+ +T+   +  + R +      
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAK 319

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++FEEM   G  P+  T   LI+   S  ++++   L   M
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKM 360



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 4/224 (1%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L   P L   +         +V++EM R  I   + +  +++    K G   K   V+  
Sbjct: 195 LSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVED 254

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G  P     N++++ Y + G+  K + +L  M       +  T+NILI+ + R   
Sbjct: 255 MKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDEN 314

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +   + +F+ +  + L+P+VVT+ S +            L + ++M   G  P+  T   
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNA 374

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEKG 259
           LI+    +  +++   ++  + K       I FN     YG+ G
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAG 418



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 16/157 (10%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + +EM+  G+   + ++ +L+ A  K G   K   ++++M + GL P     N+++
Sbjct: 457 EARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALI 516

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G       V T MEK    A+I TYN+LI  +   G +E+   L   +  K L 
Sbjct: 517 DGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLI 576

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           P+  T+                  + +EM++ G  PD
Sbjct: 577 PNRTTYDI----------------LRDEMMEKGFIPD 597



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 82/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + +++ + G+ P + +   L+ AY K G +     + + M  +G+ P+    N 
Sbjct: 385 LKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNC 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R G  ++  ++   ME     AD+ TYNIL++   + G   K   L   +    
Sbjct: 445 LIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVG 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P  +T+ + +  Y R+      L +   M   G   +  T  VLI    ++ ++E+  
Sbjct: 505 LNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEAN 564

Query: 235 TLVRTM 240
            L+  M
Sbjct: 565 RLLNEM 570



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 70/165 (42%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA  +   M   G+ P + ++  L+  + + GNV +   +  +M  +GLK D    N +
Sbjct: 421 DDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNIL 480

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+  K   +L  M +        TYN LI+ Y R G       +   +  K  
Sbjct: 481 VDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGR 540

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           + ++VT+   +  +  K        +  EM++ G  P+  T  +L
Sbjct: 541 RANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585



 Score = 43.9 bits (102), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/164 (18%), Positives = 68/164 (41%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ AY K G +       ++    G +      N ML    + G+   +E V   M + 
Sbjct: 164 MLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRR 223

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               ++ T++++IN   + G  +K   + + + A    P V+T+ + +  Y +     + 
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             + +EM+    +P+  T  +LI     ++ +     +   M +
Sbjct: 284 DALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQR 327



 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM  +G+ P+  ++  L+  Y + GN      V   M K G + +    N ++ 
Sbjct: 493 AVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIK 552

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            +   G+ E+   +L  M +     + +TY+IL +     GFI  ++G
Sbjct: 553 GFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDIDG 600


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 7/186 (3%)

Query: 45  NLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           NLF F   I         S A ++ + + R G+TP + ++  L+    K  NV + E  +
Sbjct: 250 NLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYL 309

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
           +++   GL+PD F  N++++ Y ++G  +  E++L       +  D  TY  LIN   + 
Sbjct: 310 HKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQN 369

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
             I++   LF +   K LKP V+ +   +    ++ L  + L++  EM + GC  D  T 
Sbjct: 370 DEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTY 429

Query: 218 KVLISA 223
            ++I+ 
Sbjct: 430 NLVING 435



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 1/199 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A+ +F +M R+GI P + +   LL    K G V + E ++N++ K G+  + F  N
Sbjct: 196 YRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFN 255

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
             +    R G       +L ++ +     D+ TYN LI    +   + + E     L   
Sbjct: 256 IFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNG 315

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L+PD  T+ + +  Y +  + +   +I +  I  G  PD  T   LI+     D+I++ 
Sbjct: 316 GLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRA 375

Query: 234 TTLVR-TMHKDMKTALPIY 251
             L    + K +K  + +Y
Sbjct: 376 LALFNAALGKGLKPTVILY 394



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 83/180 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+F      G+ PT+  + +L+    + G + +   ++N+M ++G   D +  N ++N
Sbjct: 375 ALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVIN 434

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G       ++       Y  D+ T+N LI+ Y +   +E    +   + +  + P
Sbjct: 435 GLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTP 494

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV+T+ S L   S+       +E FE M++ GC P+  T  +L  +     ++ +   LV
Sbjct: 495 DVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLV 554



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 35/220 (15%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT----------- 87
           +L +   + + + S YF  AH VF  MK +GI P + +  + + ++ +T           
Sbjct: 111 VLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLN 170

Query: 88  ---------GNVAKCEGV---------------INQMHKSGLKPDTFVINSMLNLYGRLG 123
                      VA C  V                N M + G+ PD    N +L+   + G
Sbjct: 171 NMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKG 230

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           + ++ E +L  + K    +++ T+NI I    R G +     +  S+  + L PDVVT+ 
Sbjct: 231 EVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYN 290

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + +    +        +   ++++ G  PDG T   LI  
Sbjct: 291 TLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDG 330



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 4/174 (2%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P   ++  L+    +   + +   + N     GLKP   + N ++    + G   + 
Sbjct: 351 GFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQA 410

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            +++  M +   ++DI TYN++IN   + G +     L     AK   PDV T+ + +  
Sbjct: 411 LQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDG 470

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS----ACSSEDQIEQVTTLVR 238
           Y ++      ++I  +M   G  PD  T   +++    A  +ED +E   T+V 
Sbjct: 471 YCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVE 524



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA+ +  +    G  P + +   L+  Y K   +     ++N+M   G+ PD    NS+
Sbjct: 443 SDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSV 502

Query: 116 LNLYGRLGQFEK-MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           LN   +  + E  ME   T +EKG     I TYNIL     + G + +   L   +  K 
Sbjct: 503 LNGLSKAVKNEDLMETFETMVEKGCVPNKI-TYNILTESLCKAGKVNEALDLVDEILNKG 561

Query: 175 LKPDVVTWTSRLAAYSRK-------KLYRRCLE--------------------------- 200
           + PD V++ + ++ ++         +L+RR  E                           
Sbjct: 562 ITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMG 621

Query: 201 --IFEEMIDAGCYPDGGTAKVLISA 223
             +F EM   GC PD  T +V+I  
Sbjct: 622 EKLFLEMGAGGCAPDTYTYRVMIDG 646



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 77/185 (41%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D    FE M   G  P   ++ +L  +  K G V +   +++++   G+ PDT    +++
Sbjct: 514 DLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATII 573

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + +   G  +   ++   M E+   +   +TYNI+IN +     +   E LF  + A   
Sbjct: 574 SGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGC 633

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD  T+   +  +          +   EMI+ G  P   T   +I+    + ++ +   
Sbjct: 634 APDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVD 693

Query: 236 LVRTM 240
           ++  M
Sbjct: 694 IIHFM 698



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 2/176 (1%)

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
           + +Y + G V +   V  +M     +P     N+++N+    G F++  +V   M+    
Sbjct: 83  MKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGI 142

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             D+ T+ I I  + R         L  ++ ++  + + V + + +A +  +       E
Sbjct: 143 VPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYE 202

Query: 201 IFEEMIDAGCYPDGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
           +F +M+  G +PD  T  K+L + C   +  E    L + + K M + L   FN++
Sbjct: 203 LFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNL-FTFNIF 257


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  V E+MK  G +P++ ++  ++  Y K G + K + ++ +M    + P+    N 
Sbjct: 245 FQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNI 304

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + R       ++V   M++     ++ TYN LIN     G +++  GL   +    
Sbjct: 305 LIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMG 364

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKP+VVT+ + +  + +KK+ +   E+ +++   G  P+  T   LI A     +++   
Sbjct: 365 LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDD-A 423

Query: 235 TLVRTMHKD 243
            L+R+M  D
Sbjct: 424 FLLRSMMLD 432



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 92/189 (48%), Gaps = 3/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + ++M  +G+ P + ++  L+  + K   + +   +++ + K GL P+    N+
Sbjct: 350 LDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ YG+ G+ +    + + M       ++STYN LI  + R G +++   L + +    
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI---DAGCYPDGGTAKVLISACSSEDQIE 231
           LK D+VT+   + A  +K   R+ + + +EM      G   +  T  VLI    ++ ++E
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLE 529

Query: 232 QVTTLVRTM 240
           +   L+  M
Sbjct: 530 EANRLLNEM 538



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 80/161 (49%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +L +  K G +   E V  +M +  +  +    + ++N   ++G+F+K  +V+  M+   
Sbjct: 200 MLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWG 259

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           ++  + TYN +I+ Y + G + K + L + + AKR+ P+ +T+   +  + R +      
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAK 319

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++FEEM   G  P+  T   LI+   S  ++++   L   M
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKM 360



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 4/224 (1%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L   P L   +         +V++EM R  I   + +  +++    K G   K   V+  
Sbjct: 195 LSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVED 254

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G  P     N++++ Y + G+  K + +L  M       +  T+NILI+ + R   
Sbjct: 255 MKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDEN 314

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +   + +F+ +  + L+P+VVT+ S +            L + ++M   G  P+  T   
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNA 374

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEKG 259
           LI+    +  +++   ++  + K       I FN     YG+ G
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAG 418



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 19/161 (11%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA  +   M   G+ P + ++  L+  + + GNV +   +  +M  +GLK D    N +
Sbjct: 421 DDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNIL 480

Query: 116 LNLYGRLGQFEKMEEVL---TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++   + G+  K   +L   T MEK    A+I TYN+LI  +   G +E+   L   +  
Sbjct: 481 VDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLE 540

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           K L P+  T+                  + +EM++ G  PD
Sbjct: 541 KGLIPNRTTYDI----------------LRDEMMEKGFIPD 565



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 3/169 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + +++ + G+ P + +   L+ AY K G +     + + M  +G+ P+    N 
Sbjct: 385 LKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNC 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL---P 171
           ++  + R G  ++  ++   ME     AD+ TYNIL++   + G   K   L   +    
Sbjct: 445 LIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLME 504

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            K  + ++VT+   +  +  K        +  EM++ G  P+  T  +L
Sbjct: 505 KKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 553



 Score = 43.9 bits (102), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 30/164 (18%), Positives = 68/164 (41%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+ AY K G +       ++    G +      N ML    + G+   +E V   M + 
Sbjct: 164 MLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRR 223

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               ++ T++++IN   + G  +K   + + + A    P V+T+ + +  Y +     + 
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             + +EM+    +P+  T  +LI     ++ +     +   M +
Sbjct: 284 DALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQR 327


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 94/192 (48%), Gaps = 2/192 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S    +A  +F+EM +  + PT+ ++  L+    K+G ++    +I++MH  G+  D
Sbjct: 255 FCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPAD 314

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               NS+++   + G  ++   +   M+   +  D  T+ IL++   +GG ++  + +FQ
Sbjct: 315 VITYNSLIDGLCKNGHLDRAIALFNKMKDXRF--DRLTFTILLDGLCKGGRLKDAQEVFQ 372

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            L  K    DV  +   +  Y ++ L    L +  +M D GC P   T +++I+A   +D
Sbjct: 373 DLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPSAVTFEIIINALFEKD 432

Query: 229 QIEQVTTLVRTM 240
           + ++   L+  M
Sbjct: 433 ENDKAEKLLHEM 444



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 88/218 (40%), Gaps = 2/218 (0%)

Query: 36  NFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +F  L    N F  +  I F    +V  ++ + G  P   +   L+      G V K   
Sbjct: 104 DFFTLNILMNCFCHMGQINF--GFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALH 161

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
             +++   G+K D     +++N   ++G      +++  ++      ++  YN +I+   
Sbjct: 162 FHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALC 221

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   + +  GLF  + AK +  +VV++   +  + + K+    L +F+EM      P   
Sbjct: 222 KYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIV 281

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           T   L+       +I  V  L+  MH     A  I +N
Sbjct: 282 TYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYN 319



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/177 (19%), Positives = 75/177 (42%), Gaps = 1/177 (0%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           GI     S+  L+    K G+      ++ ++     KP+  + N++++   +     + 
Sbjct: 170 GIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEA 229

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + M     +A++ +YNI+I  + +   +++   LF+ +  K + P +VT+ S +  
Sbjct: 230 YGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDG 289

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
             +        E+ +EM D G   D  T   LI        +++   L   M KD +
Sbjct: 290 LCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAIALFNKM-KDXR 345



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 10/242 (4%)

Query: 36  NFLLLQHTPNLF-------VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG 88
           + L ++HTP +         F    ++S A ++   ++  GI P   +  +L+  +   G
Sbjct: 60  SMLCMRHTPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNILMNCFCHMG 119

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
            +     V+ ++ K G +P T    +++      GQ  K       +       D  +Y 
Sbjct: 120 QINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYG 179

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            LIN   + G       L + +  +  KP+V  + + + A  + +L      +F EM   
Sbjct: 180 TLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAK 239

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KDMKTALPIYFNLYGEKGVARSNLGQ 267
           G   +  +  ++I        +++   L + MH K+M   +  Y +L    G+ +S    
Sbjct: 240 GISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLM--DGLCKSGRIS 297

Query: 268 YI 269
           Y+
Sbjct: 298 YV 299


>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g48730, chloroplastic; Flags: Precursor
 gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 38/188 (20%)

Query: 42  HTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           HT ++ +  F+    F     +  +M+R GI P   ++  L+ AY K     + E  + Q
Sbjct: 222 HTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQ 281

Query: 100 M------------------------------------HKSGLKPDTFVINSMLNLYGRLG 123
           M                                      SG++P+    N +L+ YG+ G
Sbjct: 282 MLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSG 341

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            ++KM  V+  M+K  Y+  I TYN++I+ +GR G +++ME LF+ + ++R+ P  VT  
Sbjct: 342 NYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLC 401

Query: 184 SRLAAYSR 191
           S + AY R
Sbjct: 402 SLVRAYGR 409



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 4/180 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +E+ +  GI P +++  +LL +Y K+GN  K   V+  M K          N +++ +GR
Sbjct: 315 YEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGR 374

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  ++ME +   M+         T   L+  YGR    +K+ G+ + +    ++ D+V 
Sbjct: 375 AGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVF 434

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +   + AY R + +     + E M   G  PD  T + ++ A     +I  +TT V+ +H
Sbjct: 435 FNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAY----RISGMTTHVKELH 490



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 40  LQHTPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           L + PN+ +++  I           AH +F+EM   G     + +  L++AYS++G    
Sbjct: 144 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 203

Query: 93  CEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
              ++ +M  S   +PD    + ++  + ++  F+K++++L+ M +     +  TYN LI
Sbjct: 204 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 263

Query: 152 NIYGRGG-FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY---SRKKLYRRCLEIFEEMID 207
           + YG+   F+E    L Q L     KPD  T  S L A+    + ++   C E F+    
Sbjct: 264 DAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQ---S 320

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +G  P+  T  +L+ +       ++++ ++  M K
Sbjct: 321 SGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQK 355



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 88/191 (46%), Gaps = 2/191 (1%)

Query: 55  FSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           F  A  + E MK      P + ++ +L+ ++ +     K + +++ M + G++P+T   N
Sbjct: 201 FDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYN 260

Query: 114 SMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++++ YG+   F +ME  L  M  +     D  T N  +  +G  G IE ME  ++   +
Sbjct: 261 TLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQS 320

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             ++P++ T+   L +Y +   Y++   + E M          T  V+I A      ++Q
Sbjct: 321 SGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQ 380

Query: 233 VTTLVRTMHKD 243
           +  L R M  +
Sbjct: 381 MEYLFRLMQSE 391



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 69/130 (53%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AV E M++   + T+ ++ +++ A+ + G++ + E +   M    + P    + S++  Y
Sbjct: 348 AVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAY 407

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           GR  + +K+  VL  +E      D+  +N L++ YGR     +M+G+ + +  K  KPD 
Sbjct: 408 GRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDK 467

Query: 180 VTWTSRLAAY 189
           +T+ + + AY
Sbjct: 468 ITYRTMVKAY 477



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 50  IFSIYFSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           I ++ +  A  VFE ++ +L   P +  ++ L+    K     K   +  +M   G   +
Sbjct: 125 ITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVN 184

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLF 167
             V  ++++ Y R G+F+    +L  M+   +   D+ TY+ILI  + +    +K++ L 
Sbjct: 185 HEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLL 244

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSS 226
             +  + ++P+ +T+ + + AY + K++        +M+ +  C PD  T    + A   
Sbjct: 245 SDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGG 304

Query: 227 EDQIE 231
             QIE
Sbjct: 305 NGQIE 309



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  M+   I P+  +   L+ AY +     K  GV+  +  S ++ D    N +++ YG
Sbjct: 384 LFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYG 443

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF---IEKMEGLFQSLPAKRL-- 175
           R+ +F +M+ VL  MEK  +  D  TY  ++  Y   G    ++++ G+ +S+   ++  
Sbjct: 444 RMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVGEAQVVV 503

Query: 176 -KPD 178
            KPD
Sbjct: 504 KKPD 507


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 100/203 (49%), Gaps = 4/203 (1%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F++M    +  T+ S  +++    K G V + + ++ +M   G+KP+    N+++N Y +
Sbjct: 203 FKKMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIK 262

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +  FE + E+L  ME      + +TY +LI  YG  G I + E +F+ +  + ++ D+  
Sbjct: 263 IMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHV 322

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +TS ++   +    +R   +F+E+ + G   +  T   LI    +  Q++    LV  M 
Sbjct: 323 FTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQ 382

Query: 242 -KDMKTALPIY---FNLYGEKGV 260
            + +   L I+    N Y +KG+
Sbjct: 383 SQGLDMNLVIFNTLINGYCKKGM 405



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P   S  +++  + K GN+ + E V   M K G KP+    N++++ Y + G+ ++ 
Sbjct: 455 GVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEA 514

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             +   ME     +DI TY  L++     G +E+   L   +  K L   +VT+T+ ++ 
Sbjct: 515 YRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISG 574

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            S++        +++EM+ AG  PD      L++
Sbjct: 575 LSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVA 608



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 35/215 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+F+E+   G+     ++  L+     +G +   E ++N+M   GL  +  + N+++N
Sbjct: 339 AFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLIN 398

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYN----------------------------- 148
            Y + G  ++   +   MEK  +  DI TYN                             
Sbjct: 399 GYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDP 458

Query: 149 ------ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
                 I+I+I+ + G + + E +FQ +  K  KP+VVT+ + +  YS+K   +    + 
Sbjct: 459 NAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLK 518

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +EM   G   D  T   L+       ++E+  TL+
Sbjct: 519 DEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLL 553



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 65/131 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF++MK+ G  P + ++  L+  YSK G + +   + ++M   G+  D +   +++
Sbjct: 478 EAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLV 537

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +     G+ E+   +L  + +   A  I TY  +I+   + G  E+   L+  + A  L 
Sbjct: 538 HGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLT 597

Query: 177 PDVVTWTSRLA 187
           PD   +TS +A
Sbjct: 598 PDDRVYTSLVA 608



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 65/138 (47%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           ++ LL+  Y  +G +A+ E V  +M + G++ D  V  S+++   +LG  ++   +   +
Sbjct: 287 TYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDEL 346

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
            +    A+  TY  LI+     G ++  E L   + ++ L  ++V + + +  Y +K + 
Sbjct: 347 NERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMI 406

Query: 196 RRCLEIFEEMIDAGCYPD 213
              L + + M   G   D
Sbjct: 407 DEALRMQDVMEKKGFEND 424


>gi|186478651|ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g19290
 gi|332191705|gb|AEE29826.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 904

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VFE +K   +      + +L+  Y +TG +     V + M + G++ +T + NS
Sbjct: 312 MEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNS 371

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y + GQ  + E++ + M   S   D  TYN L++ Y R G++++   L   +  K 
Sbjct: 372 LINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKE 431

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + P V+T+   L  YSR   +   L +++ M+  G   D  +   L+ A
Sbjct: 432 VVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEA 480



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 2/173 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLY 119
           V+++M    ++P + +  +++ AY ++GNV K      +   S GL+ +    NS++N Y
Sbjct: 212 VYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGY 271

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
             +G  E M  VL  M +   + ++ TY  LI  Y + G +E+ E +F+ L  K+L  D 
Sbjct: 272 AMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQ 331

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
             +   +  Y R    R  + + + MI+ G   +      LI+  C S   +E
Sbjct: 332 HMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVE 384



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 88/185 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V + M  +G+         L+  Y K+G + + E + ++M+   LKPD    N+++
Sbjct: 349 DAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLV 408

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G  ++  ++   M +      + TYNIL+  Y R G    +  L++ +  + + 
Sbjct: 409 DGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVN 468

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D ++ ++ L A  +   +   ++++E ++  G   D  T  V+IS     +++ +   +
Sbjct: 469 ADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEI 528

Query: 237 VRTMH 241
           +  ++
Sbjct: 529 LDNVN 533



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 6/196 (3%)

Query: 43  TPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           +P +F  I  +Y       +A  VF+ M   G  P++ S   LL+   + G       V 
Sbjct: 154 SPTVFDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVY 213

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGR 156
           +QM    + PD F  + ++N Y R G  +K        E       ++ TYN LIN Y  
Sbjct: 214 DQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAM 273

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +E M  + + +  + +  +VVT+TS +  Y +K L      +FE + +     D   
Sbjct: 274 IGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHM 333

Query: 217 AKVLISACSSEDQIEQ 232
             VL+       QI  
Sbjct: 334 YGVLMDGYCRTGQIRD 349



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 75/182 (41%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V   M   G++  + ++  L+  Y K G + + E V   + +  L  D  +   +++ Y 
Sbjct: 283 VLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYC 342

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R GQ      V   M +     + +  N LIN Y + G + + E +F  +    LKPD  
Sbjct: 343 RTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHH 402

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + +  Y R       L++ ++M      P   T  +L+   S       V +L + M
Sbjct: 403 TYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMM 462

Query: 241 HK 242
            K
Sbjct: 463 LK 464



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M    + P   ++  L+  Y + G V +   + +QM +  + P     N +L
Sbjct: 384 EAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILL 443

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
             Y R+G F  +  +   M ++G  A +IS   +L  ++  G F E M+ L++++ A+ L
Sbjct: 444 KGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMK-LWENVLARGL 502

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
             D +T    ++   + +      EI + +    C P   T + L
Sbjct: 503 LTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQAL 547



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 2/199 (1%)

Query: 41  QHTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
            HT N  V  +  + Y  +A  + ++M +  + PT+ ++ +LL  YS+ G       +  
Sbjct: 401 HHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWK 460

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M K G+  D    +++L    +LG F +  ++   +       D  T N++I+   +  
Sbjct: 461 MMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKME 520

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            + + + +  ++   R KP V T+ +    Y +    +    + E M   G +P      
Sbjct: 521 KVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYN 580

Query: 219 VLISACSSEDQIEQVTTLV 237
            LIS       + +V  LV
Sbjct: 581 TLISGAFKYRHLNKVADLV 599



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 2/186 (1%)

Query: 57  DAHAVF--EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           D   VF  E    LG+   + ++  L+  Y+  G+V     V+  M + G+  +     S
Sbjct: 242 DKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTS 301

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + G  E+ E V   +++    AD   Y +L++ Y R G I     +  ++    
Sbjct: 302 LIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIG 361

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ +     S +  Y +        +IF  M D    PD  T   L+        +++  
Sbjct: 362 VRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEAL 421

Query: 235 TLVRTM 240
            L   M
Sbjct: 422 KLCDQM 427



 Score = 38.1 bits (87), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 87/200 (43%), Gaps = 1/200 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++A  ++E +   G+     +  ++++   K   V + + +++ ++    KP      +
Sbjct: 487 FNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQA 546

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           + + Y ++G  ++   V   ME+      I  YN LI+   +   + K+  L   L A+ 
Sbjct: 547 LSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARG 606

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P V T+ + +  +    +  +      EMI+ G   +      + ++    D+I++  
Sbjct: 607 LTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEAC 666

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            L++ +  D    LP Y +L
Sbjct: 667 LLLQKI-VDFDLLLPGYQSL 685



 Score = 37.0 bits (84), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 3/156 (1%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKGSYAADI 144
           KT  +A  E V N   K  L P+  V N  +    + G+ E   ++ + +     +  D 
Sbjct: 698 KTQKIA--ESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDE 755

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
            TY ILI+     G I K   L   +  K + P++VT+ + +    +     R   +  +
Sbjct: 756 YTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHK 815

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +   G  P+  T   LI        + +   L   M
Sbjct: 816 LPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKM 851


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 2/160 (1%)

Query: 65  MKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           ++R+G  + P + ++  L+    K   V +    + +M   G  PD F  N++++ Y + 
Sbjct: 269 VERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKS 328

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G  ++  E+L       +  D  TY  LIN     G IE+   LF    AK LKPD+V +
Sbjct: 329 GMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVY 388

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            S +    R+ L    L++  EM++ GC+PD  T  ++I+
Sbjct: 389 NSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIIN 428



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 87/193 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F E +   + P +  +  L+    + G +     V+N+M + G  PD +  N ++N   
Sbjct: 372 LFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLC 431

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           ++G       V+       Y  D+ T+N LI+ Y +   ++    L + +    + PDV+
Sbjct: 432 KMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVI 491

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ S L    +    +   E FEEMI  GC P+  T  +LI      +Q+E+ + ++  M
Sbjct: 492 TYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRM 551

Query: 241 HKDMKTALPIYFN 253
            +D      + FN
Sbjct: 552 CQDGLVPDAVSFN 564



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 83/184 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           + +  FEEM   G  P   ++ +L+  + K   + +  GVI +M + GL PD    N+++
Sbjct: 508 EVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLI 567

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R G  +    +   +++  Y+A   T+NILI  Y     ++  E +F  + +K  K
Sbjct: 568 HGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYK 627

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+ T+   +    +     R      EMI  G  P   T   +++  +   ++ +   +
Sbjct: 628 PDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAI 687

Query: 237 VRTM 240
           +  M
Sbjct: 688 IHIM 691



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 7/198 (3%)

Query: 42  HTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + P++F F          +    A  + E M   GI P + ++  +L    K G   +  
Sbjct: 451 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVN 510

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
               +M   G +P+    N ++  + ++ Q E+   V+  M +     D  ++N LI+ +
Sbjct: 511 ETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGF 570

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            R G ++    LFQ L  K       T+   + AYS K   +   +IF EMI  G  PD 
Sbjct: 571 CRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDL 630

Query: 215 GTAKVLISACSSEDQIEQ 232
            T ++L+        +++
Sbjct: 631 YTYRILVDGLCKAANVDR 648



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 82/194 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V  EM   G  P + ++ +++    K GN++    V+N     G  PD F  N++++ Y 
Sbjct: 407 VMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYC 466

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +  + +   +++  M     A D+ TYN ++N   + G  +++   F+ +  K  +P+ +
Sbjct: 467 KRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAI 526

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +  + +         +   M   G  PD  +   LI        ++    L + +
Sbjct: 527 TYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKL 586

Query: 241 HKDMKTALPIYFNL 254
            +   +A    FN+
Sbjct: 587 DEKGYSATADTFNI 600



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 75/173 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA  V  +    G  P + +   L+  Y K   +     ++ +M   G+ PD    NS
Sbjct: 436 ISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNS 495

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN   + G+ +++ E    M       +  TYNILI  + +   +E+  G+   +    
Sbjct: 496 VLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDG 555

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           L PD V++ + +  + R         +F+++ + G      T  +LI A SS+
Sbjct: 556 LVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSK 608



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 36/225 (16%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN------------------- 89
            + + Y   AH V+  M   G+ P  ++H + L ++  TG                    
Sbjct: 116 LVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAK 175

Query: 90  -VAKCEGV---------------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
             A C  V                ++M    + PD    N++L+   + G   +   +L 
Sbjct: 176 PAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLA 235

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            + K   +A+  T NI I      G +E+   L + + A  + PDVVT+ + +    +  
Sbjct: 236 KVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDS 294

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
             +   +    M++ GC PD  T   +I        +++ T L++
Sbjct: 295 KVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLK 339



 Score = 38.1 bits (87), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/123 (17%), Positives = 54/123 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F+++   G + T  +  +L+ AYS   N+   E +  +M   G KPD +    +++
Sbjct: 579 AYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVD 638

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +    ++    L  M    +   ++T+  ++N+      + +   +   +    + P
Sbjct: 639 GLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVP 698

Query: 178 DVV 180
           +VV
Sbjct: 699 EVV 701


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 96/199 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + E+MK +G+ PT  ++  L+  Y   GN+       ++M + GL P     N 
Sbjct: 277 LEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNM 336

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++      + ++ + ++  M +     D  TYNILIN Y R G ++K   L   + +K 
Sbjct: 337 LIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKG 396

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P  VT+TS +   S++   ++  ++FE+++  G +PD      LI    +   +++  
Sbjct: 397 IQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAF 456

Query: 235 TLVRTMHKDMKTALPIYFN 253
            +++ M +       + FN
Sbjct: 457 AMLKEMDQMKVVPDEVTFN 475



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 89/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   GI PT  ++  L+   SK G + + + +  ++ + G+ PD  + N++++
Sbjct: 385 AFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALID 444

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  ++   +L  M++     D  T+N L+    R G +E    L + + ++ +KP
Sbjct: 445 GHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKP 504

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +++ + ++ YS++   +    + +EM+  G  P   T   LI      ++ +    L+
Sbjct: 505 DHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLL 564

Query: 238 RTM 240
           + M
Sbjct: 565 KEM 567



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 4/212 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+ MK  G+ P   ++   ++   K G + +  G++ +M + GL+P     N++++
Sbjct: 245 ARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLID 304

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G  E   +    M +      +STYN+LI+       +++ +G+ + +  K L P
Sbjct: 305 GYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVP 364

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+   +  Y R    ++   + +EMI  G  P   T   LI   S   +++Q   L 
Sbjct: 365 DSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLF 424

Query: 238 RTMHKDMKTALP--IYFNLYGEKGVARSNLGQ 267
             + +  K   P  I FN   +   A  N+ +
Sbjct: 425 EKIVR--KGIFPDLIMFNALIDGHCANGNMDR 454



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 83/178 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + +EM   G+ P   ++ +L+  Y + GNV K   + ++M   G++P      S
Sbjct: 347 MDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTS 406

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ +  + G+ ++ +++   + +     D+  +N LI+ +   G +++   + + +   +
Sbjct: 407 LIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMK 466

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + PD VT+ + +    R+       E+ EEM   G  PD  +   LIS  S    ++ 
Sbjct: 467 VVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKD 524



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 80/176 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA   F+ MK  G+ P + +   +L+ + K+    K   +  +M +  +K      N M
Sbjct: 138 DDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIM 197

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N+  + G+ +K +E +  ME      ++ TYN +I+ Y   G +E    +F  +  + +
Sbjct: 198 INVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGV 257

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           KPD  T+ S ++   ++        + E+M + G  P   T   LI    ++  +E
Sbjct: 258 KPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLE 313



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 93/209 (44%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +F+ S     A  ++ EM R+ I  ++ +  +++    K G + K +  I  M   G+
Sbjct: 163 LSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGI 222

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           KP+    N++++ Y   G+ E    +   M+      D  TY   I+   + G +E+  G
Sbjct: 223 KPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASG 282

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           + + +    L+P  VT+ + +  Y  K       +  ++M+  G  P   T  +LI A  
Sbjct: 283 MLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALF 342

Query: 226 SEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
            + ++++   +++ M +       + +N+
Sbjct: 343 LDCKMDEADGIIKEMSEKGLVPDSVTYNI 371



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 75/166 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE++ R GI P +     L+  +   GN+ +   ++ +M +  + PD    N+++ 
Sbjct: 420 ADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQ 479

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G+ E   E++  M+      D  +YN LI+ Y + G ++    +   + +    P
Sbjct: 480 GRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNP 539

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            ++T+ + +    + +      ++ +EMI  G  P+  T   LI  
Sbjct: 540 TLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEG 585



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%)

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
           + M   G+ P     N ML+L+ +  + EK   +   M +    + + T+NI+IN+  + 
Sbjct: 145 DMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKE 204

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G ++K +     + A  +KP+VVT+ + +  Y  +        IF+ M   G  PD  T 
Sbjct: 205 GKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTY 264

Query: 218 KVLISACSSEDQIEQVTTLVRTM 240
              IS    E ++E+ + ++  M
Sbjct: 265 GSFISGMCKEGKLEEASGMLEKM 287



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + EEMK  GI P   S+  L++ YSK G++     V ++M   G  P     N+++ 
Sbjct: 490 ARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQ 549

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
              +  + +  E++L  M       + +TY  LI   G
Sbjct: 550 GLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIG 587


>gi|15231160|ref|NP_187922.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75311241|sp|Q9LK58.1|PP225_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13150
 gi|10172602|dbj|BAB01406.1| unnamed protein product [Arabidopsis thaliana]
 gi|66792658|gb|AAY56431.1| At3g13150 [Arabidopsis thaliana]
 gi|332641781|gb|AEE75302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 551

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 3/178 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVINSML 116
           AH +F+EM  L    T+KS   LL+AY  +  + +      ++  K G+ PD    N+M+
Sbjct: 141 AHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMI 200

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-NIYGRGGFIEKMEGLFQSLPAKRL 175
               R G  + +  +   +EK  +  D+ ++N L+   Y R  F+E  + ++  + +K L
Sbjct: 201 KALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG-DRIWDLMKSKNL 259

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            P++ ++ SR+   +R K +   L + + M   G  PD  T   LI+A   ++ +E+V
Sbjct: 260 SPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEV 317



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 83/177 (46%), Gaps = 1/177 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           L  ++ S    +A   F+E+ ++LGITP + ++  ++ A  + G++     +  ++ K+G
Sbjct: 164 LSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNG 223

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            +PD    N++L  + R   F + + +   M+  + + +I +YN  +    R        
Sbjct: 224 FEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDAL 283

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            L   +  + + PDV T+ + + AY         ++ + EM + G  PD  T  +LI
Sbjct: 284 NLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLI 340



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 78/182 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D  ++FEE+++ G  P + S   LL  + +     + + + + M    L P+    NS +
Sbjct: 211 DILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRV 270

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  +F     ++  M+    + D+ TYN LI  Y     +E++   +  +  K L 
Sbjct: 271 RGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLT 330

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+   +    +K    R +E+ EE I           K ++       +I++ T L
Sbjct: 331 PDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQL 390

Query: 237 VR 238
           V+
Sbjct: 391 VK 392



 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F+DA  + + MK  GI+P + ++  L+TAY    N+ +     N+M + GL PDT     
Sbjct: 279 FTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCM 338

Query: 115 MLNLYGRLGQFEKMEEV 131
           ++ L  + G  ++  EV
Sbjct: 339 LIPLLCKKGDLDRAVEV 355


>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           herrerae]
          Length = 433

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A A+  EMK  G+ P   S+  LLT Y +     +   V +
Sbjct: 82  LVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVFS 141

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 142 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 201

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 202 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 261

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 262 TIISIWGKVGKLDRAAMLFQKLR 284



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G  P + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 63  YSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYST 122

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V + M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 123 LLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 182

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 183 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 213



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 170 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 229

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 230 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVE 289

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 290 IDQVLYQTMIVAYERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEATYV 345

Query: 237 VR 238
            R
Sbjct: 346 FR 347



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/180 (18%), Positives = 79/180 (43%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +EM+   ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
             + K   + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++
Sbjct: 61  CDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           ++ L  Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 85/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y + G   + + +   M K G++P+    N+
Sbjct: 133 FIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 192

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   L Q +  + 
Sbjct: 193 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG 252

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 253 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/219 (17%), Positives = 91/219 (41%), Gaps = 31/219 (14%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 203 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 262

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP--- 171
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 263 IISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPD 322

Query: 172 -------------AKRLKP---------------DVVTWTSRLAAYSRKKLYRRCLEIFE 203
                        A R++                D+  +   +  +S+ K Y   +E+F+
Sbjct: 323 NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVVEVFD 382

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +M   G +PD     ++++A     ++++   +   M +
Sbjct: 383 KMRGLGYFPDSNVIALVLNAYGKLHELDKANDVYMEMQE 421


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 2/200 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      +EE+   G   ++    +L+  + K G++   + V + + K GL+P     N
Sbjct: 103 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 162

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + +AM       D+ TY++LIN   +   ++   GLF  +  K
Sbjct: 163 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVK 222

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + +       +EI+++M+     PD  T   LI     +  ++Q 
Sbjct: 223 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 282

Query: 234 TTLVRTMHKDMKTALPIYFN 253
             L+  M   MK   P  F 
Sbjct: 283 HDLIDEM--SMKGLKPDKFT 300



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/197 (19%), Positives = 87/197 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F+EM   G+ P   +   L+  + K G V     +  QM    L PD    N+++ 
Sbjct: 212 ANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 271

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  ++  +++  M       D  TY  LI+   + G ++      + +  + ++ 
Sbjct: 272 GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 331

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V +T+ ++   ++       ++  EM+  G  PD GT  ++++    +  + + + L+
Sbjct: 332 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLL 391

Query: 238 RTMHKDMKTALPIYFNL 254
           + M +D      + +N+
Sbjct: 392 KEMQRDGHAPSVVTYNV 408



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 76/166 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M    + P + ++  L+    K G++ +   +I++M   GLKPD F   ++++
Sbjct: 247 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 306

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  +   E    M + +   D   Y  LI+   + G     E + + + +  LKP
Sbjct: 307 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP 366

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D  T+T  +  + +K    +  ++ +EM   G  P   T  VL++ 
Sbjct: 367 DTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF  M   G +P + S+ +L+    +   V +   ++N+M   G +P+     S
Sbjct: 68  FEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGS 127

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   ++G+ ++  ++ + M       D   YN+LI+ + + G + +   LF+ +  K 
Sbjct: 128 LLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG 187

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
             P V T+ S L+ +SRK  + R   +F++M+  GC P+  T   L+   C   D +E
Sbjct: 188 CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVE 245



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F    ++F++M R G  P + +   LL  + K G++ +   +  +M   G  PD    N+
Sbjct: 208 FGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNT 267

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G+  + + +L  M +     DI +YNILI+ Y + G ++    LF  +P   
Sbjct: 268 LIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSG 327

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+PD  ++++ +    R         +F++MI  G  PD      L+      +++ +  
Sbjct: 328 LEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESC 387

Query: 235 TLVRTMHK 242
            L + M K
Sbjct: 388 ELFQAMVK 395



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 2/177 (1%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           S+  LL   +K+G      G  N M  +G  P+T+    +L    +  +FE+   V   M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
                + ++ +Y+ILI    RG  +++   L   +     +P+VVT+ S L+   +    
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
           +  +++F  M+  GC PDG    VLI   S +  + +   L   M +  K  +P  F
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLE--KGCIPTVF 193



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 85/186 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M   G  P    + +L+  +SK G++ +   +  +M + G  P  F  NS+L
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL 199

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R G+F +++ +   M +     +I T+N L++ + + G + +   LF  + +    
Sbjct: 200 SGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCP 259

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVV++ + +     K        +  EMI +G  PD  +  +LI   S    ++    L
Sbjct: 260 PDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKL 319

Query: 237 VRTMHK 242
              + K
Sbjct: 320 FYEIPK 325



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 80/182 (43%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           +  + +M   G  P   ++  LL +  +     +   V   M   G  P+ F  + ++  
Sbjct: 37  YGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAG 96

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
             R  + ++  E+L  M  G +  ++ TY  L++   + G +++   LF  +  +   PD
Sbjct: 97  LCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPD 156

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
            V +   +  +S+K        +FEEM++ GC P   T   L+S  S + +  +V +L +
Sbjct: 157 GVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFK 216

Query: 239 TM 240
            M
Sbjct: 217 DM 218



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 69/156 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +F EM+ LG  P + S+  L+      G   + + ++ +M +SG+ PD    N ++
Sbjct: 245 EAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILI 304

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y + G  +   ++   + K     D  +Y+ +I+   R G +     +F+ + A    
Sbjct: 305 DGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSA 364

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           PD       +    R +      E+F+ M+   C P
Sbjct: 365 PDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVP 400



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  EM R G+ P + S+ +L+  YSK+G +     +  ++ KSGL+PD F  ++++
Sbjct: 280 EAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTII 339

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G+      V   M     A D +    L+    RG  + +   LFQ++      
Sbjct: 340 DCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECV 399

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           P +  +   +    + K      EIF E+ + G  PD   +KV++      D 
Sbjct: 400 PLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDD 452



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 54/132 (40%)

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           T   N +L +  + G+ + +      M       +  TY  L+    +    E+   +F+
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            + A+   P+V +++  +A   R +      E+  EMID G  P+  T   L+S      
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 229 QIEQVTTLVRTM 240
           ++++   L   M
Sbjct: 137 KLKEAVDLFSRM 148


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 1/187 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F ++    I P   +  +L+  + K   + + + V   M K G+ PD    NS++
Sbjct: 248 DAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLM 307

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y  + +    + +   M +G    DI +YNILIN + +   ++K   LF  +  K + 
Sbjct: 308 DGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNII 367

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VVT+ S +   S+       L++ ++M D G  P+  T   +I A     Q+++   L
Sbjct: 368 PNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIAL 427

Query: 237 VRTMHKD 243
           + T  KD
Sbjct: 428 I-TKFKD 433



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 86/188 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + +DA  ++ EM   GI+P + ++  L++ +   G +     + N++    +KPD +  N
Sbjct: 210 HVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFN 269

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ + +  + ++ + V   M K     D+ TYN L++ Y     +   + +F ++   
Sbjct: 270 ILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQG 329

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + PD+ ++   +  + + K   + + +F EM      P+  T   LI   S   +I   
Sbjct: 330 GVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYA 389

Query: 234 TTLVRTMH 241
             LV  MH
Sbjct: 390 LQLVDQMH 397



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 1/193 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   VF  M + GI P + ++  L+  Y     V   + + N M + G+ PD    N ++
Sbjct: 283 EGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILI 342

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + ++ + +K   +   M   +   ++ TYN LI+   + G I     L   +  + + 
Sbjct: 343 NGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVP 402

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTT 235
           P+++T+ S + A  +     + + +  +  D G  P   T  +LI   C  E     V T
Sbjct: 403 PNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVNT 462

Query: 236 LVRTMHKDMKTAL 248
               +H   K  L
Sbjct: 463 YNVMIHGFCKKGL 475



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 26/201 (12%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM    I P + ++  L+   SK+G ++    +++QMH  G+ P+    NS+++
Sbjct: 354 AMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIID 413

Query: 118 LYGRLGQFEKMEEVLTAMEKGS--------------------YAADISTYNILINIYGRG 157
              +  Q +K   ++T  +                       Y   ++TYN++I+ + + 
Sbjct: 414 ALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKK 473

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G  ++   L   +      P+ VT+   + +        +  ++F EMI  G      + 
Sbjct: 474 GLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGLLNRSASY 533

Query: 218 KVLISACSSEDQIEQVTTLVR 238
                 CSS  +I Q  T+V+
Sbjct: 534 -----PCSSM-KIHQSLTMVQ 548



 Score = 40.4 bits (93), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 102/227 (44%), Gaps = 24/227 (10%)

Query: 34  LINFLLLQH-TPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           L N LL Q+ TP  F F       + S ++    ++ ++M+  GI P + +  +L+  + 
Sbjct: 73  LFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCFC 132

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVI----------NSMLNLYGRLGQFEKMEEVLTAM 135
           + G +  C     Q+H++ L  D  V            ++++   ++G+     ++L  +
Sbjct: 133 QLG-LIPC-----QIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRV 186

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
           +      +   YN +I    +   +     L+  + +K + P+VVT+++ ++ +      
Sbjct: 187 DGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKL 246

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +  +++F ++I     PDG T  +L+     + ++++  T+   M K
Sbjct: 247 KDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMK 293



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 18/208 (8%)

Query: 30  SHFMLINFLLLQHTPNLF-------VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLT 82
           +HF LI+FL+L    N          F  +    DA ++F  + R   TP       +L 
Sbjct: 36  THF-LISFLILLTKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILG 94

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG-------QFEKMEEVLTAM 135
           +  K+ +      +  +M   G+KP+ F  N ++  + +LG       Q     + L A+
Sbjct: 95  SLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVAL 154

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
               +  D  +Y  LI+   + G       L Q +  K ++ + V + + +    + K  
Sbjct: 155 ---GFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHV 211

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISA 223
               +++ EM+  G  P+  T   LIS 
Sbjct: 212 NDAFDLYSEMVSKGISPNVVTYSALISG 239


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 5/192 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-----PDTF 110
           S A  +  +M   G+TPT  ++ ++L  + + G +        QM K G K     PD  
Sbjct: 214 SRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIV 273

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
              ++++  G  GQ +K  ++   M K      ++TYN LI +  + G +E    +F  +
Sbjct: 274 SYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDM 333

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
             K   P+VVT+T  +          R +++ E M   GC P   T  VLI     E +I
Sbjct: 334 VRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEI 393

Query: 231 EQVTTLVRTMHK 242
           E+   L   M K
Sbjct: 394 EKALCLFERMSK 405



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 19/223 (8%)

Query: 26  LPY-PSHFMLI--NFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLT 82
           LP+ P  F ++   F   Q  P++ V +F +    +H V +++      P   S   LL 
Sbjct: 122 LPFTPRTFPILFERFAASQRRPDIAVRLF-LSLHRSHRVVQDL------PLFNS---LLD 171

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
           A  K+ + +K   ++  + +    PD    N++ + + R     +  ++L  M +     
Sbjct: 172 ALGKSRHASKAASLVRALERR-FPPDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTP 230

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAK-----RLKPDVVTWTSRLAAYSRKKLYRR 197
             +TYNI++  + R G I+     F  +  +       KPD+V++T+ +          +
Sbjct: 231 TKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDK 290

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             ++F+EM   GC P   T   LI     +  +E   T+   M
Sbjct: 291 ARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDM 333



 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 11/141 (7%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEV-----LTAMEKGSYAADISTYNILINIYGRGGFIE 161
           P TF I     L+ R    ++  ++     L+         D+  +N L++  G+     
Sbjct: 126 PRTFPI-----LFERFAASQRRPDIAVRLFLSLHRSHRVVQDLPLFNSLLDALGKSRHAS 180

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           K   L ++L  +R  PDVVT+ +    + R K   R L++  +M ++G  P   T  +++
Sbjct: 181 KAASLVRAL-ERRFPPDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIIL 239

Query: 222 SACSSEDQIEQVTTLVRTMHK 242
                  QI+        M K
Sbjct: 240 KGFFRAGQIQHAWNFFLQMKK 260


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 1/197 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ-MHKSGLKPDTFVINSML 116
           A   F+ M   G  P + S+  L+  + +   ++K   ++ + M   G+ PD     S++
Sbjct: 233 AFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSII 292

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +LG  +   E+   M       +  T+N+LI+ +G+ G +     +++ +      
Sbjct: 293 SGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCL 352

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+TS +  Y R+    + L+++EEM      P+  T  VLI+A   E++I +    
Sbjct: 353 PDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNF 412

Query: 237 VRTMHKDMKTALPIYFN 253
           +R +        P  +N
Sbjct: 413 LRHLKSSEVVPKPFIYN 429



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 36/202 (17%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M+  GI P      LL+++Y++ G +   +  +N++H  G+K   FV N++LN
Sbjct: 128 AKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLN 187

Query: 118 L-----------------------------------YGRLGQFEKMEEVLTAMEKGSYAA 142
           +                                     R+G+ +K  E    M       
Sbjct: 188 MLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFP 247

Query: 143 DISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
           DI +YN LIN + R   I K   L  + +  K + PDV+T+TS ++ Y +    +   E+
Sbjct: 248 DIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASEL 307

Query: 202 FEEMIDAGCYPDGGTAKVLISA 223
           F+EM+ +G  P+  T  VLI  
Sbjct: 308 FDEMVSSGIKPNDFTFNVLIDG 329



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 81/180 (45%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           E+M   G++P + ++  +++ Y K G++     + ++M  SG+KP+ F  N +++ +G++
Sbjct: 274 EDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKV 333

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G       +   M       D+ T+  LI+ Y R G + +   L++ +  + L P+V T+
Sbjct: 334 GNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTY 393

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
              + A  ++   R        +  +   P       +I       ++++   +V  M +
Sbjct: 394 AVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQE 453



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 6/181 (3%)

Query: 62  FEEMKR--LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           F E  R  L I  T  ++ LL+    K G     + V + M   G+ PD+ ++  +++ Y
Sbjct: 95  FFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSY 154

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADIS--TYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            R+G+ +  +  L   E   Y   +S   YN L+N+  +   +++   LF+        P
Sbjct: 155 ARMGKLDSAKNFLN--EVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVP 212

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++   +    R     +  E F+ M + GC+PD  +   LI+     ++I +   L+
Sbjct: 213 DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLL 272

Query: 238 R 238
           +
Sbjct: 273 K 273



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 71/165 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++E+M  LG  P + +   L+  Y + G V +   +  +M    L P+ +    ++N
Sbjct: 339 AMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLIN 398

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +  +    L  ++          YN +I+ + + G +++   +   +  K+ +P
Sbjct: 399 ALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRP 458

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           D +T+T  +     K      +  F +MI+  C PD  T   LIS
Sbjct: 459 DKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLIS 503


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF  M   G +P + S+ +L+    +   V +   ++N+M   G +P+     S
Sbjct: 68  FEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGS 127

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   ++G+ ++  ++ + M       D   YN+LI+ + + G + +   LF+ +  K 
Sbjct: 128 LLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG 187

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
             P V T+ S L+ +SRK  + R   +F++M+  GC P+  T   L+   C   D +E
Sbjct: 188 CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVE 245



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F    ++F++M R G  P + +   LL  + K G++ +   +  +M   G  PD    N+
Sbjct: 208 FGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNT 267

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G+  + + +L  M +     DI +YNILI+ Y + G ++    LF  +P   
Sbjct: 268 LMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSG 327

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+PD  ++++ +    R         +F++MI  G  PD      L+      +++ +  
Sbjct: 328 LEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESC 387

Query: 235 TLVRTMHK 242
            L + M K
Sbjct: 388 ELFQAMVK 395



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 2/177 (1%)

Query: 76  SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135
           S+  LL   +K+G      G  N M  +G  P+T+    +L    +  +FE+   V   M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
                + ++ +Y+ILI    RG  +++   L   +     +P+VVT+ S L+   +    
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
           +  +++F  M+  GC PDG    VLI   S +  + +   L   M +  K  +P  F
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLE--KGCIPTVF 193



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 85/186 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M   G  P    + +L+  +SK G++ +   +  +M + G  P  F  NS+L
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL 199

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R G+F +++ +   M +     +I T+N L++ + + G + +   LF  + +    
Sbjct: 200 SGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCP 259

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVV++ + +     K        +  EMI +G  PD  +  +LI   S    ++    L
Sbjct: 260 PDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKL 319

Query: 237 VRTMHK 242
              + K
Sbjct: 320 FYEIPK 325



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 80/182 (43%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           +  + +M   G  P   ++  LL +  +     +   V   M   G  P+ F  + ++  
Sbjct: 37  YGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAG 96

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
             R  + ++  E+L  M  G +  ++ TY  L++   + G +++   LF  +  +   PD
Sbjct: 97  LCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPD 156

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
            V +   +  +S+K        +FEEM++ GC P   T   L+S  S + +  +V +L +
Sbjct: 157 GVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFK 216

Query: 239 TM 240
            M
Sbjct: 217 DM 218



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 78/175 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  EM R G+ P + S+ +L+  YSK+G +     +  ++ KSGL+PD F  ++++
Sbjct: 280 EAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTII 339

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G+      V   M     A D +    L+    RG  + +   LFQ++      
Sbjct: 340 DCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECV 399

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           P +  +   +    + K      EIF E+ + G  PD   +KV++      D  E
Sbjct: 400 PLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKE 454



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 69/156 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +F EM+ LG  P + S+  L+      G   + + ++ +M +SG+ PD    N ++
Sbjct: 245 EAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILI 304

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y + G  +   ++   + K     D  +Y+ +I+   R G +     +F+ + A    
Sbjct: 305 DGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSA 364

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           PD       +    R +      E+F+ M+   C P
Sbjct: 365 PDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVP 400



 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 54/132 (40%)

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           T   N +L +  + G+ + +      M       +  TY  L+    +    E+   +F+
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            + A+   P+V +++  +A   R +      E+  EMID G  P+  T   L+S      
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 229 QIEQVTTLVRTM 240
           ++++   L   M
Sbjct: 137 KLKEAVDLFSRM 148


>gi|449458793|ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g19280-like [Cucumis sativus]
 gi|449503522|ref|XP_004162044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g19280-like [Cucumis sativus]
          Length = 532

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 91/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE+M   G+ P +  + +L+ AY K G + K   +++ M  + + PD    N+++N
Sbjct: 298 AEVMFEKMIVEGLKPDVVVYNILMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTLIN 357

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G  ++ +++L  + +  ++ D+ TY  +I+ Y   G  E+   L+  +    + P
Sbjct: 358 GLVMRGFLQEAKDILDELIRRGFSVDVVTYTNIIHGYSTRGNFEEAFLLWYHMAENCVTP 417

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT ++ L+ Y R+K       +F +M+D G  PD      LI    S   +++   LV
Sbjct: 418 DVVTCSALLSGYCREKRMDEANALFCKMLDIGLKPDLILYNTLIHGFCSVGNVDEGCNLV 477

Query: 238 RTM 240
           + M
Sbjct: 478 KKM 480



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 9/203 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTG--------NVAKCEGVINQMHKSGLKPDTFVI 112
           V  E++  G  P +  +  ++ +  K          +V   E +  +M   GLKPD  V 
Sbjct: 258 VLLELRNFGSKPDVVDYTTVINSLCKVSLLKEATALDVEMAEVMFEKMIVEGLKPDVVVY 317

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +++ YG+ G   K  ++L  M   +   D+ TYN LIN     GF+++ + +   L  
Sbjct: 318 NILMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEAKDILDELIR 377

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +    DVVT+T+ +  YS +  +     ++  M +    PD  T   L+S    E ++++
Sbjct: 378 RGFSVDVVTYTNIIHGYSTRGNFEEAFLLWYHMAENCVTPDVVTCSALLSGYCREKRMDE 437

Query: 233 VTTL-VRTMHKDMKTALPIYFNL 254
              L  + +   +K  L +Y  L
Sbjct: 438 ANALFCKMLDIGLKPDLILYNTL 460



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 25/202 (12%)

Query: 56  SDAHAVFEEMKRLGITPTM--------------KSHM---LLLTAYSKTGNVAKCEGVIN 98
           + A  + ++MK L I P++              +S M   LL   + + GN+ K   V+ 
Sbjct: 201 TSALILIDQMKHLNIFPSIWVYKSVIKALLQTNQSGMAWDLLEEMHRQEGNLGKGWKVLL 260

Query: 99  QMHKSGLKPD----TFVINSMLNLY----GRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150
           ++   G KPD    T VINS+  +           E  E +   M       D+  YNIL
Sbjct: 261 ELRNFGSKPDVVDYTTVINSLCKVSLLKEATALDVEMAEVMFEKMIVEGLKPDVVVYNIL 320

Query: 151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
           ++ YG+ G++ K   L   + +  + PDVVT+ + +     +   +   +I +E+I  G 
Sbjct: 321 MDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEAKDILDELIRRGF 380

Query: 211 YPDGGTAKVLISACSSEDQIEQ 232
             D  T   +I   S+    E+
Sbjct: 381 SVDVVTYTNIIHGYSTRGNFEE 402



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/141 (18%), Positives = 66/141 (46%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  + +E+ R G +  + ++  ++  YS  GN  +   +   M ++ + PD    +
Sbjct: 364 FLQEAKDILDELIRRGFSVDVVTYTNIIHGYSTRGNFEEAFLLWYHMAENCVTPDVVTCS 423

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L+ Y R  + ++   +   M       D+  YN LI+ +   G +++   L + +   
Sbjct: 424 ALLSGYCREKRMDEANALFCKMLDIGLKPDLILYNTLIHGFCSVGNVDEGCNLVKKMIES 483

Query: 174 RLKPDVVTWTSRLAAYSRKKL 194
            + P+ VT  + +  + +K++
Sbjct: 484 SIIPNNVTHRALVLGFQKKRV 504


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 1/197 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ-MHKSGLKPDTFVINSML 116
           A   F+ M   G  P + S+  L+  + +   ++K   ++ + M   G+ PD     S++
Sbjct: 233 AFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSII 292

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y +LG  +   E+   M       +  T+N+LI+ +G+ G +     +++ +      
Sbjct: 293 SGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCL 352

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVT+TS +  Y R+    + L+++EEM      P+  T  VLI+A   E++I +    
Sbjct: 353 PDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNF 412

Query: 237 VRTMHKDMKTALPIYFN 253
           +R +        P  +N
Sbjct: 413 LRHLKSSEVVPKPFIYN 429



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 36/202 (17%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M+  GI P      LL+++Y++ G +   +  +N++H  G+K   FV N++LN
Sbjct: 128 AKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLN 187

Query: 118 L-----------------------------------YGRLGQFEKMEEVLTAMEKGSYAA 142
           +                                     R+G+ +K  E    M       
Sbjct: 188 MLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFP 247

Query: 143 DISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
           DI +YN LIN + R   I K   L  + +  K + PDV+T+TS ++ Y +    +   E+
Sbjct: 248 DIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASEL 307

Query: 202 FEEMIDAGCYPDGGTAKVLISA 223
           F+EM+ +G  P+  T  VLI  
Sbjct: 308 FDEMVSSGIKPNDFTFNVLIDG 329



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 81/180 (45%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           E+M   G++P + ++  +++ Y K G++     + ++M  SG+KP+ F  N +++ +G++
Sbjct: 274 EDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKV 333

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G       +   M       D+ T+  LI+ Y R G + +   L++ +  + L P+V T+
Sbjct: 334 GNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTY 393

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
              + A  ++   R        +  +   P       +I       ++++   +V  M +
Sbjct: 394 AVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQE 453



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 6/181 (3%)

Query: 62  FEEMKR--LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           F E  R  L I  T  ++ LL+    K G     + V + M   G+ PD+ ++  +++ Y
Sbjct: 95  FFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSY 154

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADIS--TYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            R+G+ +  +  L   E   Y   +S   YN L+N+  +   +++   LF+        P
Sbjct: 155 ARMGKLDSAKNFLN--EVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVP 212

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV ++   +    R     +  E F+ M + GC+PD  +   LI+     ++I +   L+
Sbjct: 213 DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLL 272

Query: 238 R 238
           +
Sbjct: 273 K 273



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 71/166 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++E+M  LG  P + +   L+  Y + G V +   +  +M    L P+ +    ++N
Sbjct: 339 AMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLIN 398

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +  +    L  ++          YN +I+ + + G +++   +   +  K+ +P
Sbjct: 399 ALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRP 458

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D +T+T  +     K      +  F +MI+  C PD  T   LIS 
Sbjct: 459 DKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISC 504


>gi|242044488|ref|XP_002460115.1| hypothetical protein SORBIDRAFT_02g022950 [Sorghum bicolor]
 gi|241923492|gb|EER96636.1| hypothetical protein SORBIDRAFT_02g022950 [Sorghum bicolor]
          Length = 511

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 42/228 (18%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVA-------------------KCEGVINQMHKSG 104
           EM+ LGI P+  S+  L++AY +   ++                   K   +   M + G
Sbjct: 270 EMQDLGIRPSAGSYNCLISAYGRQKKMSGKAEDAFLRMKREVNGLHEKAHTIYVDMKREG 329

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAM--EKG----------SYAADISTYNILIN 152
           LKP      ++LN   R G  EK+ E    M  EK                + TYNIL+N
Sbjct: 330 LKPTLETYTALLNTLRRAGDTEKLMETWKTMIDEKARDVIYEFGKIGLKPTVMTYNILMN 389

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            YGRGG   K+  L + + A  LKPD +T+++ + AY+R + + R     ++M+ +G  P
Sbjct: 390 AYGRGGQHYKLPQLLKEMAALELKPDSITYSTVIYAYARVRDFSRAFYYHKQMVRSGQIP 449

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGV 260
           D  + + L++           T  V+   K++K    I   + G+ G+
Sbjct: 450 DPRSYRKLLN-----------TLDVKAARKNIKDKSAIQGMIRGKSGL 486



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 19/179 (10%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           +F F     +A  +  EM++ GI      +  L+ AY K+  + + EG+  +M + GL+ 
Sbjct: 184 IFCFDGLKKEALIIQLEMEKRGIASNTSIYETLMKAYCKSNQIEEAEGLFVEMKEKGLQA 243

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR----------- 156
            T   N +++ Y R  Q E +E +L  M+         +YN LI+ YGR           
Sbjct: 244 TTTTYNILMDAYSRRLQTEVVESLLFEMQDLGIRPSAGSYNCLISAYGRQKKMSGKAEDA 303

Query: 157 --------GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
                    G  EK   ++  +  + LKP + T+T+ L    R     + +E ++ MID
Sbjct: 304 FLRMKREVNGLHEKAHTIYVDMKREGLKPTLETYTALLNTLRRAGDTEKLMETWKTMID 362



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 12/212 (5%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
           +  A  VFE M++  + P  ++  ++L    K+   AK       +M++ G+     V  
Sbjct: 120 YDGAWEVFELMEKNNVQPDHRTSAIMLNIMKKSKASAKDAWEFFQRMNRKGVNWSFDVGA 179

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N++   G  ++   +   MEK   A++ S Y  L+  Y +   IE+ EGLF  +  K
Sbjct: 180 ALINIFCFDGLKKEALIIQLEMEKRGIASNTSIYETLMKAYCKSNQIEEAEGLFVEMKEK 239

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA--------CS 225
            L+    T+   + AYSR+        +  EM D G  P  G+   LISA          
Sbjct: 240 GLQATTTTYNILMDAYSRRLQTEVVESLLFEMQDLGIRPSAGSYNCLISAYGRQKKMSGK 299

Query: 226 SEDQIEQVTTLVRTMHKDMKTALPIYFNLYGE 257
           +ED   ++   V  +H+   T   IY ++  E
Sbjct: 300 AEDAFLRMKREVNGLHEKAHT---IYVDMKRE 328



 Score = 43.5 bits (101), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 46/95 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  E  ++G+ PT+ ++ +L+ AY + G   K   ++ +M    LKPD+   ++++ 
Sbjct: 365 ARDVIYEFGKIGLKPTVMTYNILMNAYGRGGQHYKLPQLLKEMAALELKPDSITYSTVIY 424

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            Y R+  F +       M +     D  +Y  L+N
Sbjct: 425 AYARVRDFSRAFYYHKQMVRSGQIPDPRSYRKLLN 459


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 3/214 (1%)

Query: 43  TPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N  +  +SI   + +   +F EM R G+ P + +    +++  K G   +     + M
Sbjct: 299 TYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSM 358

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
              G KPD    + +L+ Y   G    M  +  +ME     AD S YNILI+ YG+ G +
Sbjct: 359 AAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMM 418

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++   +F  +  + + PD  T+ + +AA+SR       ++ F +MI  G  PD      L
Sbjct: 419 DEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSL 478

Query: 221 ISA-CSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           I   C   + ++    +   M + +     ++FN
Sbjct: 479 IQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFN 512



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M   G  P   ++  ++  YS  G   +  G+  +M + GL PD F  NS ++
Sbjct: 281 AELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMS 340

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  E   +M    +  D+ TY++L++ Y   G++  M  LF S+    +  
Sbjct: 341 SLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVA 400

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           D   +   + AY ++ +    + IF +M + G  PD  T   +I+A S
Sbjct: 401 DHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFS 448



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 3/212 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +F EM + G+ P + ++   + A  K   + K E V+ QM  +G +PD    N M
Sbjct: 244 SKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCM 303

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y  LGQ+++   +   M +     DI T N  ++   + G  ++    F S+ AK  
Sbjct: 304 IHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGH 363

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPD+VT++  L  Y+ +      L +F  M   G   D     +LI A      +++   
Sbjct: 364 KPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAML 423

Query: 236 LVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
           +   M +  +  +P  +  YG    A S +G+
Sbjct: 424 IFTQMQE--RGVMPDAWT-YGTVIAAFSRMGR 452



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 4/199 (2%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           K  G +P + S+  ++  + + G V+K   + ++M + G+ PD    +S ++   +    
Sbjct: 219 KSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAM 278

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
           +K E VL  M    +  D  TYN +I+ Y   G  ++  G+F+ +  + L PD+ T  S 
Sbjct: 279 DKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSY 338

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
           +++  +    +   E F+ M   G  PD  T  VL+   ++E  +  +  L  +M  +  
Sbjct: 339 MSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGI 398

Query: 246 TALPIYFNL----YGEKGV 260
            A    +N+    YG++G+
Sbjct: 399 VADHSVYNILIDAYGKRGM 417



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 6/198 (3%)

Query: 58  AHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +  EM   GI  P       ++ +  K G V + + + + +   G +PD    NS++
Sbjct: 491 AKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLI 550

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + YG +G+ EK   VL AM       D+ TY+ L++ Y R G I+    LF+ + +K +K
Sbjct: 551 DGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVK 610

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P  +T+   L             ++  EMI++G   D  T  +++      +  ++   L
Sbjct: 611 PTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAL 670

Query: 237 VRTMHKDMKTALPIYFNL 254
            + +      A+ + FN+
Sbjct: 671 FKKL-----GAMNVKFNI 683



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 79/185 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V + M  +GI P + ++  LL  Y + G +     +  +M   G+KP T     +L+
Sbjct: 562 AFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILH 621

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+    +++   M +     DIST  I++    R    ++   LF+ L A  +K 
Sbjct: 622 GLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKF 681

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++    + + A  + +      E+F+ +   G  P+  T  V+I+    E  +E+   + 
Sbjct: 682 NIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMF 741

Query: 238 RTMHK 242
             M K
Sbjct: 742 SLMEK 746



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 75/149 (50%), Gaps = 2/149 (1%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--GSYAADISTYNILINI 153
           ++++M + G++PDT   +++L       + ++  ++L  M K  G  + ++ +YN +I+ 
Sbjct: 177 LLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHG 236

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + R G + K   LF  +  + + PDVVT++S + A  + +   +   +  +MI  G  PD
Sbjct: 237 FFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPD 296

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             T   +I   S   Q ++   + R M +
Sbjct: 297 KVTYNCMIHGYSILGQWKETAGMFREMTR 325



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 64/116 (55%), Gaps = 3/116 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A+ +F+ +   G+ P   ++ +++T   K G+V + + + + M KSG  P + ++N+++
Sbjct: 701 EANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNII 760

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            +    G+  K    L+ ++  + + + ST +++++++ R G   K     +SLPA
Sbjct: 761 RVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKG---KYREQIKSLPA 813


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 87/173 (50%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           + R+ +TP + S+  ++    K+G++     +++QM   G  PD    +S+++ + + G+
Sbjct: 173 LARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGE 232

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E+   +L +M K     ++  YN L+    R G I K E +   +  +   PDVV++ +
Sbjct: 233 VERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 292

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            +    + +  ++   +F+ M++ GC P+  +  +L+     + +++   TLV
Sbjct: 293 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLV 345



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 73/150 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A  + ++M   G TP + ++  L+  + K G V +  G+++ M K G +P+    NS
Sbjct: 198 LDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNS 257

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    RLG   K E++L  ME+  +  D+ +YN  I+   +   ++K + +F  +  + 
Sbjct: 258 LLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERG 317

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
             P+  +++  +    +KK     + + E+
Sbjct: 318 CTPNASSYSMLVEELCKKKELDDAITLVEQ 347



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 93/191 (48%), Gaps = 8/191 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +  EM+R G TP + S+   +    K   V K + V ++M + G  P+    +
Sbjct: 267 HIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNA---S 323

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGS---YAADISTYNILINIYGRGGFIEKMEGLF-QS 169
           S   L   L + +++++ +T +E+        DI  Y +L++   +GG  ++   LF + 
Sbjct: 324 SYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKV 383

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           L  K  +PDV  +   L ++ +++   + L+I ++M++  C  +  T  +L+     +D+
Sbjct: 384 LDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC-NVVTWNILVHGLCVDDR 442

Query: 230 IEQVTTLVRTM 240
           +    T++ TM
Sbjct: 443 LSDAETMLLTM 453



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 79/188 (42%), Gaps = 3/188 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A     EM +    PT+ ++  ++    K G       ++++M   G  P+ +  N 
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++       + ++ +++L  M    Y  D+ TYN  I    +   +++       +P   
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP--- 177

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDVV++T+ +    +         + ++M + GC PD  T   LI       ++E+  
Sbjct: 178 VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAM 237

Query: 235 TLVRTMHK 242
            L+ +M K
Sbjct: 238 GLLDSMLK 245



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 84/215 (39%), Gaps = 37/215 (17%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK--------------S 103
           A AVF+ M   G TP   S+ +L+    K   +     ++ Q  +               
Sbjct: 306 AKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLD 365

Query: 104 GL----------------------KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141
           GL                      +PD F  N ML+ + +  Q +K  ++   M + +  
Sbjct: 366 GLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERN-C 424

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            ++ T+NIL++       +   E +  ++  +   PD VT+ + + A  +       LE+
Sbjct: 425 CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALEL 484

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           FEE +  GC PD  T   LI+    E+  E+   L
Sbjct: 485 FEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLL 519



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/169 (18%), Positives = 69/169 (40%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P   +  +LL    ++  + K   ++ +M + G  PD  + N++++ Y +   F +  + 
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           L  M K      + TY  +++   + G  +    L   +  K   P++ T+   +     
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++      ++ EEM   G +PD  T    I      D++++    +  M
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM 176


>gi|302791627|ref|XP_002977580.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
 gi|300154950|gb|EFJ21584.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
          Length = 555

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 1/179 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM   G+ P+  +  +L+  Y+K G + K   V + + +   K D  V N++L 
Sbjct: 184 AKGMFDEMATYGLEPSEITLSILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNTLLK 243

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G  ++ E ++  ME      D  TY IL+N+Y   G + ++  +F  L    + P
Sbjct: 244 SCVESGNIQRAESLIAEMEMEKQWPDHMTYGILMNVYATKGMVAEVRAMFDKLKNLAVFP 303

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
               +T  + A  +   + R   IF+EM+  GC  +   + +L+S C+S  QI   T L
Sbjct: 304 KAAFYTMLIKASKQAGDFDRIPGIFDEMVANGCSVNERMSGMLVS-CASSSQISDETRL 361



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 17/227 (7%)

Query: 49  FIFSIYFS---------DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + FSI+ S         DA A F  ++  G++    ++  ++  Y K G  A+   +   
Sbjct: 61  YTFSIFVSCSKRCDRAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQT 120

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M K+  KPD      + N+Y R+G ++ +  +   ME+     ++  +N LI   GR G 
Sbjct: 121 MRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGK 180

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +   +G+F  +    L+P  +T +  +  Y++     + L++++ +       D      
Sbjct: 181 VTLAKGMFDEMATYGLEPSEITLSILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNT 240

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALP------IYFNLYGEKGV 260
           L+ +C     I++  +L+  M  +M+   P      I  N+Y  KG+
Sbjct: 241 LLKSCVESGNIQRAESLIAEM--EMEKQWPDHMTYGILMNVYATKGM 285



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 78/168 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S +  + +EM    I P   +  + ++   +           +++ ++G+  D    ++
Sbjct: 41  WSLSEVLLKEMLEERIMPDNYTFSIFVSCSKRCDRAEDAIAWFHRLRETGVSFDGVTYSA 100

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++LYG+ G+  +  ++   M K ++  D+ ++ ++ N+Y R G  + +  LF+ +    
Sbjct: 101 MIDLYGKAGRTAEAMDLYQTMRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAE 160

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +KP+VV + + +    R         +F+EM   G  P   T  +LI 
Sbjct: 161 IKPNVVLFNTLIGTLGRAGKVTLAKGMFDEMATYGLEPSEITLSILID 208



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 86/181 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +++ M++    P + S  ++   YS+ G+      +   M ++ +KP+  + N++
Sbjct: 112 AEAMDLYQTMRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTL 171

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +   GR G+    + +   M          T +ILI++Y + G ++K   ++ ++  K+ 
Sbjct: 172 IGTLGRAGKVTLAKGMFDEMATYGLEPSEITLSILIDMYTKVGALDKALDVYDTIKQKKW 231

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           K DV+ + + L +       +R   +  EM     +PD  T  +L++  +++  + +V  
Sbjct: 232 KLDVLVYNTLLKSCVESGNIQRAESLIAEMEMEKQWPDHMTYGILMNVYATKGMVAEVRA 291

Query: 236 L 236
           +
Sbjct: 292 M 292


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 86/181 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A ++F  M    + P ++++  L+    + G +     ++++  + GL PD F  NS+
Sbjct: 603 TEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSI 662

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G   K  ++   M +   + +I TYN LIN   + G IE+   LF  +P K L
Sbjct: 663 ISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGL 722

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             + VT+ + +  Y +     +   +F+EM   G  PD      LI  C  E   E+  +
Sbjct: 723 AHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALS 782

Query: 236 L 236
           L
Sbjct: 783 L 783



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 96/196 (48%), Gaps = 1/196 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V EEM   G+   + ++  L+    K G++ K + ++N+M   G+KPDT   N+M+
Sbjct: 359 EAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMI 418

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y +     +++++L+ M+K +      T  ++IN   R G IE    +F+ + +  +K
Sbjct: 419 EGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVK 478

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSSEDQIEQVTT 235
           P+ V +T+ +  + ++  ++  + I + M   G  PD      V+I  C S    E    
Sbjct: 479 PNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDY 538

Query: 236 LVRTMHKDMKTALPIY 251
           LV  + + +K  +  Y
Sbjct: 539 LVEMIERGLKPNVYTY 554



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 34/219 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV------ 111
           A  +F+ +   G+     ++  ++  Y K+GN++K   + ++M   G+ PD+FV      
Sbjct: 710 ARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALID 769

Query: 112 ----------------------------INSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                                       +N++++ + + G+  +  ++L  M       D
Sbjct: 770 GCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPD 829

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
             TY ILI+ + + GF+++ E  F  +  + L P+ +T+T+ L+ Y+          +F+
Sbjct: 830 HVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFD 889

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           EMI     PDG T  V+I A   E    +   LV  M K
Sbjct: 890 EMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLK 928



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 87/196 (44%), Gaps = 5/196 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S    +  EMK+  + PT  +  +++    + G++     V   M   G+KP+  +  ++
Sbjct: 428 SRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTL 487

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  + + G+F++   +L  M+K     D+  YN +I    +   +E+ +     +  + L
Sbjct: 488 IKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGL 547

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+V T+ + +  Y +    +     F+EM+  G  P+      LI     E    + T+
Sbjct: 548 KPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATS 607

Query: 236 LVRTM-----HKDMKT 246
           + R M     H D++T
Sbjct: 608 IFRCMLGRSVHPDVRT 623



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 20/204 (9%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F E  + G   T  S   L+  + K+G V +   ++  M    +KPD      +++
Sbjct: 780 ALSLFLESVQKGFAST-SSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILID 838

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G  ++ E+    M+K +   +  TY  L++ Y   G   +M  LF  + AK ++P
Sbjct: 839 YHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEP 898

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV---- 233
           D VTW+  + A+ ++  + + L++ ++M+  G         VLI     ++ + +V    
Sbjct: 899 DGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVL 958

Query: 234 ---------------TTLVRTMHK 242
                          +TLVR  HK
Sbjct: 959 EKIEEQGLNLSLATCSTLVRCFHK 982



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A     EM   G+ P + ++  L+  Y K+G +   +    +M   G+ P+  V  +++
Sbjct: 534 EAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALI 593

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y + G   +   +   M   S   D+ TY+ LI+   R G ++    L      K L 
Sbjct: 594 DGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLV 653

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV T+ S ++ + ++    +  ++ E M   G  P+  T   LI+      +IE+   L
Sbjct: 654 PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAREL 713



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 75/165 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VFE M  LG+ P    +  L+  + + G   +   ++  M K G++PD    NS++
Sbjct: 464 DASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVI 523

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               +  + E+ ++ L  M +     ++ TY  LI+ Y + G ++  +  F+ +    + 
Sbjct: 524 IGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIA 583

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           P+ V  T+ +  Y ++        IF  M+    +PD  T   LI
Sbjct: 584 PNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALI 628



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 76/161 (47%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ A+ + GN  + + ++ +M + G  P     N ++    R G+ ++  E+   M+K  
Sbjct: 242 LINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKG 301

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
             AD+ TY+ILI+ +G+     + + + + + +K LKP  V +T+ +  + R+       
Sbjct: 302 LVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAF 361

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + EEM+  G   +  T   L+        +E+   L+  M
Sbjct: 362 RVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEM 402



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/169 (19%), Positives = 78/169 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  + + M + G+ P +  +  ++    K+  + + +  + +M + GLKP+ +   +
Sbjct: 497 FQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGA 556

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y + G+ +  +     M     A +      LI+ Y + G   +   +F+ +  + 
Sbjct: 557 LIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRS 616

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + PDV T+++ +    R    +  +E+  E ++ G  PD  T   +IS 
Sbjct: 617 VHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISG 665



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 76/176 (43%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M + G+   + ++ +L+  + K     + + ++ +M   GLKP      ++++ + R G 
Sbjct: 297 MDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGD 356

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   V   M       ++ TYN L+    + G +EK + L   +    +KPD  T+ +
Sbjct: 357 SGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNN 416

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +  Y +++   R  ++  EM  +   P   T  ++I+       IE  + +   M
Sbjct: 417 MIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIM 472



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A + F   KR G    +     LL+   K   +       N M ++ +  D +    
Sbjct: 182 FDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTH 241

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + R G  ++ + +L  ME+   +  + TYN++I    R G +++   L + +  K 
Sbjct: 242 LINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKG 301

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLE---IFEEMIDAGCYP 212
           L  DV T++  +  + ++K   RC E   + EEM   G  P
Sbjct: 302 LVADVFTYSILIDGFGKQK---RCTEAKLMLEEMFSKGLKP 339


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 86/168 (51%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            D    F++M   G  PT+ ++ +++    K G+V    G+  +M   GL PDT   NSM
Sbjct: 112 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 171

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ +G++G+ +        M+      D+ TYN LIN + + G +      ++ +    L
Sbjct: 172 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 231

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           KP+VV++++ + A+ ++ + ++ ++ + +M   G  P+  T   LI A
Sbjct: 232 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 279



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 5/202 (2%)

Query: 46  LFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           +F  +FS+        +A   F +MKR  + P  +S   LL  ++K G     +     M
Sbjct: 62  VFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDM 121

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             +G +P  F  N M++   + G  E    +   M+      D  TYN +I+ +G+ G +
Sbjct: 122 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRL 181

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           +     F+ +     +PDV+T+ + +  + +       LE + EM   G  P+  +   L
Sbjct: 182 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTL 241

Query: 221 ISACSSEDQIEQVTTLVRTMHK 242
           + A   E  ++Q       M +
Sbjct: 242 VDAFCKEGMMQQAIKFYVDMRR 263



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F +M   G+ P + S+  L+  + K  N+ +   ++N++   G+KPD  +  + +
Sbjct: 323 EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 382

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                L + E  + V+  M++    A+   Y  L++ Y + G   +   L   +    ++
Sbjct: 383 WGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIE 442

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             VVT+   +    + KL  + ++ F  +  D G   +      +I     ++Q+E  TT
Sbjct: 443 VTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATT 502

Query: 236 LVRTM 240
           L   M
Sbjct: 503 LFEQM 507



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 79/181 (43%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           + EMK  G+ P + S+  L+ A+ K G + +       M + GL P+ +   S+++   +
Sbjct: 223 YREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCK 282

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G       +   M +     ++ TY  LI+       +++ E LF  +    + P++ +
Sbjct: 283 IGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS 342

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + + +  + + K   R LE+  E+   G  PD       I    S ++IE    ++  M 
Sbjct: 343 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 402

Query: 242 K 242
           +
Sbjct: 403 E 403



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 80/192 (41%), Gaps = 2/192 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEMK  G+ P   ++  ++  + K G +        +M     +PD    N+++N
Sbjct: 149 ARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 208

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+     E    M+      ++ +Y+ L++ + + G +++    +  +    L P
Sbjct: 209 CFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVP 268

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+TS + A  +         +  EM+  G   +  T   LI      +++++   L 
Sbjct: 269 NEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELF 328

Query: 238 RTMHKDMKTALP 249
             M  D    +P
Sbjct: 329 GKM--DTAGVIP 338



 Score = 44.7 bits (104), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 1/154 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLY 119
           + +EMK L I  T+ +  +L+    K   V+K     N++    GL+ +  +  +M++  
Sbjct: 432 LLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGL 491

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +  Q E    +   M +     D + Y  L++   + G + +   L   +    +K D+
Sbjct: 492 CKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDL 551

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + +TS +   S     ++     EEMI  G +PD
Sbjct: 552 LAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 585


>gi|449533905|ref|XP_004173911.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like, partial [Cucumis sativus]
          Length = 299

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AVFEEM   GI PT K++ +LL A++ +G V + + V   M +    PD     +ML
Sbjct: 50  EALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTML 109

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y      E  E     +++  +  ++ TY  LI  Y +   +EKM   ++ +    ++
Sbjct: 110 SAYVNASDMEGAEIFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIR 169

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +    T+ + AY + K +   +  F E+   G  PD     +L+S   + +++++   L
Sbjct: 170 VNQTILTTIMDAYGKNKDFGSAVIWFNEIESCGLRPDQKAKNILLSLAKTAEELDEANQL 229

Query: 237 V 237
           V
Sbjct: 230 V 230



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 80/155 (51%)

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           F   + +   ++++M+R G+ P + S+ LL++AY K     +   V  +M  +G++P   
Sbjct: 9   FETNYKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHK 68

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N +L+ +   G  E+ + V  +M++   + DI +Y  +++ Y     +E  E  F+ L
Sbjct: 69  AYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAEIFFRRL 128

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
                +P+VVT+ + +  Y++     + ++ +EEM
Sbjct: 129 KQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEM 163



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN L++       + K   ++  +    L+PDVV++   ++AY + +     L +FEEM
Sbjct: 2   TYNSLMSFETNYKEVSK---IYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEM 58

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           +DAG  P      +L+ A +    +EQ   + ++M +D
Sbjct: 59  LDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRD 96



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/119 (18%), Positives = 55/119 (46%)

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           ++++ ++   M++     D+ +Y +LI+ YG+    E+   +F+ +    ++P    +  
Sbjct: 13  YKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNI 72

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            L A++   +  +   +F+ M    C PD  +   ++SA  +   +E      R + +D
Sbjct: 73  LLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAEIFFRRLKQD 131


>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           diamantinensis]
          Length = 284

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      +EE+   G   ++    +L+  + K G++   + V + + K GL+P     N
Sbjct: 67  YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 126

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + +AM       D+ +Y++LIN   +   ++    LF  +  K
Sbjct: 127 TLMNGYXRLGDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFDEMLVK 186

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + +K      +EI++ M+     PD  T   LI     +  ++Q 
Sbjct: 187 GLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQA 246

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 247 NDLIDEM 253



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           YP+     N L+ +   +  + +       A +VF+ + + G+ P++ S+  L+  Y + 
Sbjct: 83  YPASLYFFNILMHRFCKDGDIRV-------AQSVFDAITKWGLRPSVVSYNTLMNGYXRL 135

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G++ +   + + M  SG++PD +  + ++N   +  + +   E+   M     A +  T+
Sbjct: 136 GDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTF 195

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
             LI+ + + G ++    +++ + ++ L PD++T+ + +    +K   ++  ++ +EM  
Sbjct: 196 TTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGM 255

Query: 208 AGCYPDGGTAKVLISACSSEDQIE 231
            G  PD  T   LI  C  E  ++
Sbjct: 256 KGLKPDKITYTTLIDGCCKEGNLD 279


>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 553

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 87/182 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A AVFEEM   G+ PT K++ +LL A+S +G V + + V   M +    PD     +M
Sbjct: 327 EEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTM 386

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ Y      E  E+    + +  +  ++ TY  LI  Y +   +E +   ++ +  + +
Sbjct: 387 LSAYVNADDMEGAEKFFKRLIQDDFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLVRGI 446

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           K +    T+ + AY +   +   +  F+EM   G  PD     VL+S   ++++ E+   
Sbjct: 447 KANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAKNVLLSLPKTDEEREEANE 506

Query: 236 LV 237
           LV
Sbjct: 507 LV 508



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 17/229 (7%)

Query: 41  QHTPNLFVFIF--SIYFSDAHAVFEEMKRLGI---TPTMKSHMLLLTAYSKTGNVAKCEG 95
           Q   N+ ++++  +  +  A   F  M   GI   T T  S M   T Y +  N+     
Sbjct: 243 QKMFNMMIYMYKKAGSYEKARKTFALMAERGIQQTTVTYNSLMSFETDYKEVSNI----- 297

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
             +QM ++ L+PD      +++ YG+  + E+   V   M           YNIL++ + 
Sbjct: 298 -YDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFS 356

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             G +E+ + +F+S+   R  PD+ ++T+ L+AY          + F+ +I     P+  
Sbjct: 357 ISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVV 416

Query: 216 TAKVLISACSSEDQIEQVTT-----LVRTMHKDMKTALPIYFNLYGEKG 259
           T   LI   +  + +E V       LVR + K  +T L    + YG+ G
Sbjct: 417 TYGTLIKGYAKINDLEMVMKKYEEMLVRGI-KANQTILTTIMDAYGKSG 464



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 7/188 (3%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+TAY K G+    E V+  M+K+G  P+     +++  YG+ G++   E +   M+K 
Sbjct: 140 MLITAYGKLGDFNGAEKVLGLMNKNGYVPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKW 199

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR---LKPDVVTWTSRLAAYSRKKLY 195
                  TY I++  + +G    + E LF +L       LKPD   +   +  Y +   Y
Sbjct: 200 GPEPSAFTYQIILKTFVQGNKYREAEELFDNLLNDENSPLKPDQKMFNMMIYMYKKAGSY 259

Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIYFNL 254
            +  + F  M + G      T   L+S    E   ++V+ +   M + D++  +  Y  L
Sbjct: 260 EKARKTFALMAERGIQQTTVTYNSLMSF---ETDYKEVSNIYDQMQRADLRPDVVSYALL 316

Query: 255 YGEKGVAR 262
               G AR
Sbjct: 317 VSAYGKAR 324


>gi|326511196|dbj|BAJ87612.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 725

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 90/192 (46%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           +T  +  +  S  +  AH  + +MKR G+ P+++++  LL  + + GN  K       M 
Sbjct: 487 YTSLICAYAVSGQYEKAHIAYLDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMT 546

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
              +       + +L+   + G F +  +V+    K        TYNIL+N Y +GG   
Sbjct: 547 DEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHY 606

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           K+  L + +    LKPD VT+++ + AY+R + + R     ++M+  G  PD  + + L+
Sbjct: 607 KLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLL 666

Query: 222 SACSSEDQIEQV 233
           +    +   E +
Sbjct: 667 NTLDVKSARENI 678



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +++  I ++Y       +A  +F EMK  G+ PT  ++ +L+ AYS+       E ++ +
Sbjct: 379 SIYNTIMNVYCKCSQIEEAEGLFAEMKEKGLKPTKVTYNILMDAYSRRLQPEVVESLLLE 438

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQF-EKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           MH  G +P+    N +++ YGR  +  EK E+    M+KG   A  S+Y  LI  Y   G
Sbjct: 439 MHDLGFQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVSG 498

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGC 210
             EK    +  +  + LKP + T+T+ L  + R     + +E ++ M D   GC
Sbjct: 499 QYEKAHIAYLDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTDEKVGC 552



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 1/179 (0%)

Query: 55  FSDAHAVFEEMKRLGITPT-MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + DA  +FE M++  + P  + S ++LL    +  +         +M++ G+K    V  
Sbjct: 288 YDDAWKIFESMEKNNVQPDHVTSSIMLLVMKRRKASAKDSWKFFQRMNRKGVKWSLGVSA 347

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++ ++   G  ++     + M K    ++ S YN ++N+Y +   IE+ EGLF  +  K
Sbjct: 348 SLIKIFCDEGMKKEALIFQSEMGKRGIPSNTSIYNTIMNVYCKCSQIEEAEGLFAEMKEK 407

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            LKP  VT+   + AYSR+        +  EM D G  P+  +   LISA   + ++ +
Sbjct: 408 GLKPTKVTYNILMDAYSRRLQPEVVESLLLEMHDLGFQPNARSYNCLISAYGRQKKMSE 466



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 2/203 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM + GI      +  ++  Y K   + + EG+  +M + GLKP     N +++ Y R  
Sbjct: 368 EMGKRGIPSNTSIYNTIMNVYCKCSQIEEAEGLFAEMKEKGLKPTKVTYNILMDAYSRRL 427

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI-EKMEGLFQSLPAKRLKPDVVTW 182
           Q E +E +L  M    +  +  +YN LI+ YGR   + EK E  F  +    +K    ++
Sbjct: 428 QPEVVESLLLEMHDLGFQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSY 487

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           TS + AY+    Y +    + +M   G  P   T   L+         E++    ++M  
Sbjct: 488 TSLICAYAVSGQYEKAHIAYLDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTD 547

Query: 243 DMKTALPIYFNLYGEKGVARSNL 265
           +      + F++  + G+A+  L
Sbjct: 548 EKVGCTRVTFHMVLD-GLAKHGL 569



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 1/178 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVA-KCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EM  LG  P  +S+  L++AY +   ++ K E    +M K G+K  +    S++  Y   
Sbjct: 438 EMHDLGFQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVS 497

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           GQ+EK       M++      + TY  L++I+ R G  EK+   ++S+  +++    VT+
Sbjct: 498 GQYEKAHIAYLDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTF 557

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              L   ++  L+ +  ++  E    G  P   T  +L++A +   Q  ++  L++ M
Sbjct: 558 HMVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEM 615


>gi|226493958|ref|NP_001147934.1| fertility restorer [Zea mays]
 gi|195614680|gb|ACG29170.1| fertility restorer [Zea mays]
          Length = 563

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG-RLGQFEK 127
           G+ P++  +  LL A  + G   +   V + M  +G+ P+    N ++ LY  R   F  
Sbjct: 90  GVPPSVLCYNTLLNALVEAGRAVEARSVFDGMLAAGVAPNASSFNILVKLYAWRTADFHL 149

Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
             + + AM +     D+ T++ L+    R G +++  G+   +  +  +P V T+T  + 
Sbjct: 150 AYDQIHAMRRHGLLPDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIVQ 209

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQVTTLVRTMHKDM 244
            Y R+        +   M +AGC P+  T  VLI A   +    ++EQV   + T   ++
Sbjct: 210 GYCRQGQIEEATNLIGFMEEAGCPPNAVTYNVLIRALCDDARFAEVEQVLAEIETKGHEL 269

Query: 245 KTAL-PIYFNLYGEKGVARSNLGQY 268
            T    IY +  G+KG+A+  L Q+
Sbjct: 270 STVTYNIYMDALGKKGMAKEALKQF 294



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 97/211 (45%), Gaps = 4/211 (1%)

Query: 45  NLFVFIFSIYFSDAHAVFEE---MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           N+ V +++   +D H  +++   M+R G+ P + +   L+T   + G + +  GV++ M 
Sbjct: 134 NILVKLYAWRTADFHLAYDQIHAMRRHGLLPDVGTFSTLVTGLCRAGKLDEAWGVLDWML 193

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G +P       ++  Y R GQ E+   ++  ME+     +  TYN+LI          
Sbjct: 194 QEGCRPMVHTYTPIVQGYCRQGQIEEATNLIGFMEEAGCPPNAVTYNVLIRALCDDARFA 253

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           ++E +   +  K  +   VT+   + A  +K + +  L+ FE +   G +P   T  +++
Sbjct: 254 EVEQVLAEIETKGHELSTVTYNIYMDALGKKGMAKEALKQFEALQCKGLHPTAFTLSIIL 313

Query: 222 SA-CSSEDQIEQVTTLVRTMHKDMKTALPIY 251
           +  C +    + ++ L R+   +   A+  Y
Sbjct: 314 NCLCCTSRFSQAISILERSTDLNFCAAVVAY 344


>gi|255556669|ref|XP_002519368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541435|gb|EEF42985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 524

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 8/185 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  +F  M RLG+ P   +   ++++ S  G+  + E  +  + K  +K + FV  
Sbjct: 167 FVEEALKLFNHMIRLGVQPNETTWATVISSCSSCGDPCRAESFVKLLDKRKIKMNYFVKT 226

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L++  + G  E    +   +     + + ST+N +I+ Y R G +     LF  +P +
Sbjct: 227 ALLDMNAKCGNLEAARGIFNEL---GVSRNSSTWNAMISAYTRVGDLLSARDLFDKMPER 283

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQ 232
               D V+W + ++ Y++       +E+F+EMIDA    PD  T   +ISAC     +E 
Sbjct: 284 ----DAVSWNTMISGYAQNGQSAMAIELFKEMIDAKDSQPDEVTMVSIISACGHLGALEL 339

Query: 233 VTTLV 237
            T +V
Sbjct: 340 GTWIV 344



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 5/157 (3%)

Query: 80  LLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++ Y++ G  A    +  +M      +PD   + S+++  G LG  E    ++  + + 
Sbjct: 291 MISGYAQNGQSAMAIELFKEMIDAKDSQPDEVTMVSIISACGHLGALELGTWIVNFISEY 350

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                IS YN LI +Y + G +++ + +FQ +  +    DVV++ S +  ++        
Sbjct: 351 RIELTISGYNALIFMYSKCGNMKEAQRIFQEMETR----DVVSYNSLIGGFAAHGEGNEA 406

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +++   M + G  PD  T   +++ACS    +E+ +T
Sbjct: 407 IKLLLSMKEEGVDPDHVTYIGVLTACSHAGLVEEGST 443



 Score = 40.4 bits (93), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 41/182 (22%)

Query: 94  EGVINQMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +G++   H  K G + D ++ N +L++Y +    E   ++   M + S A     +N +I
Sbjct: 42  DGILFHAHILKLGHQSDPYIRNVILDMYAKHSLIENARKLFDEMTERSLA----DWNSMI 97

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK------------------ 193
             Y + G   +   LF   P +    +V+TWT+ +  +S+ K                  
Sbjct: 98  CGYWKCGNETEACSLFSMTPER----NVITWTAMVTGFSKIKELDSARKYFDDMPVKNIV 153

Query: 194 -------------LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                             L++F  MI  G  P+  T   +IS+CSS     +  + V+ +
Sbjct: 154 SWNAIISGYAQNGFVEEALKLFNHMIRLGVQPNETTWATVISSCSSCGDPCRAESFVKLL 213

Query: 241 HK 242
            K
Sbjct: 214 DK 215


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +   +F EM  L I P + +   ++    K G V   E ++  M + G+ PD    N 
Sbjct: 264 WENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNM 323

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ YG  GQ ++  E+  +M   S   +I +YNILIN Y R   I++   + + +  K 
Sbjct: 324 IIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKG 383

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           LKP +VT    L         +     F+EM+ AG  PD
Sbjct: 384 LKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPD 422



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 82/164 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++  EMK+  I P + ++  L+ A  K         +  +M    + P+    NS+++
Sbjct: 232 ATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVID 291

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ E  EE++  M +     D+ TYN++I+ YG  G +++   +F S+  K ++P
Sbjct: 292 GLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEP 351

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +++++   +  Y+R+K     +++  E+   G  P   T  VL+
Sbjct: 352 NIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLL 395



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 86/185 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  V  E+ + G+ P++ +  +LL    + G     +   ++M  +G  PD +   ++
Sbjct: 370 DEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTL 429

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L  Y + G  E+       +E+     +I  Y  +I+   + G ++K    F+ LP   L
Sbjct: 430 LGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGL 489

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV+T+T+ ++ Y ++ L     ++  +M D GC  D  T  V++      +++ ++  
Sbjct: 490 HPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKA 549

Query: 236 LVRTM 240
            +  +
Sbjct: 550 FLEEI 554



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 89/178 (50%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M++    P    + +++ A+ K G +     ++N+M +  + PD F  +++++   +L Q
Sbjct: 204 MEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQ 263

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           +E +  +   M   +   ++ T+N +I+   + G +E  E + + +  K + PDV+T+  
Sbjct: 264 WENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNM 323

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +  Y  +    R  EIF+ MI+    P+  +  +LI+  + + +I++   + R + +
Sbjct: 324 IIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQ 381



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+  +  +++N   + G  +K  ++L  ME+GS   +   Y+I+I+ + + G ++    
Sbjct: 175 EPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATS 234

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L   +  K + PD+ T+++ + A  +   +     +F EMI    YP+  T   +I    
Sbjct: 235 LLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLC 294

Query: 226 SEDQIEQVTTLVRTMHKDMKTALPIYFNL----YGEKG 259
            E ++E    ++R M +       I +N+    YG +G
Sbjct: 295 KEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRG 332



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           DA  +F+++ R  I  P    +  ++    K G+  K   ++  M +   KP+T + + +
Sbjct: 160 DAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIV 219

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G  +    +L  M++ S   DI TY+ LI+   +    E +  LF  +    +
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNI 279

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+V T+ S +    ++       EI   MI+ G  PD  T  ++I       Q+++   
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRARE 339

Query: 236 LVRTM 240
           +  +M
Sbjct: 340 IFDSM 344



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 95/243 (39%), Gaps = 36/243 (14%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +   M   G+ P + ++ +++  Y   G V +   + + M    ++P+    N ++
Sbjct: 301 DAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILI 360

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N Y R  + ++  +V   + +      I T N+L++     G  +  +  F  + +    
Sbjct: 361 NGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHI 420

Query: 177 PDVVTWTSRLAAYSRK-----------KLYRR----CLEIFEEMIDAGC----------- 210
           PD+ T  + L  Y +            KL RR     ++I+  +ID  C           
Sbjct: 421 PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHAT 480

Query: 211 ---------YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVA 261
                    +PD  T   +IS    E  +++   ++R M  +   A    +N+   +G  
Sbjct: 481 FEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVI-VRGFL 539

Query: 262 RSN 264
           RSN
Sbjct: 540 RSN 542



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 42  HTPNLFVF--IFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P+L+    +   YF      +A + F +++R      ++ +  ++    K G + K  
Sbjct: 419 HIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAH 478

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
               ++   GL PD     +M++ Y + G  ++ +++L  ME     AD  TYN+++  +
Sbjct: 479 ATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGF 538

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            R   + +M+   + +  K    +  T
Sbjct: 539 LRSNKVSEMKAFLEEIAGKSFSFEAAT 565



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/96 (20%), Positives = 52/96 (54%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AHA FE++  +G+ P + ++  +++ Y + G + + + ++ +M  +G   D    N ++ 
Sbjct: 477 AHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVR 536

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
            + R  +  +M+  L  +   S++ + +T  +L++I
Sbjct: 537 GFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDI 572



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/188 (16%), Positives = 74/188 (39%), Gaps = 3/188 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+EM   G  P + +H  LL  Y K G V +     +++ +     +  +  ++++
Sbjct: 407 AQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVID 466

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ +K       +       D+ TY  +I+ Y + G +++ + + + +       
Sbjct: 467 GLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLA 526

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+   +  + R           EE+       +  T ++L+   + +  +     ++
Sbjct: 527 DNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAEDPSL---LNMI 583

Query: 238 RTMHKDMK 245
              H+D K
Sbjct: 584 PEFHRDNK 591


>gi|326532582|dbj|BAK05220.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 697

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 90/192 (46%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           +T  +  +  S  +  AH  + +MKR G+ P+++++  LL  + + GN  K       M 
Sbjct: 487 YTSLICAYAVSGQYEKAHIAYLDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMT 546

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
              +       + +L+   + G F +  +V+    K        TYNIL+N Y +GG   
Sbjct: 547 DEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHY 606

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           K+  L + +    LKPD VT+++ + AY+R + + R     ++M+  G  PD  + + L+
Sbjct: 607 KLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLL 666

Query: 222 SACSSEDQIEQV 233
           +    +   E +
Sbjct: 667 NTLDVKSARENI 678



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 45  NLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +++  I ++Y       +A  +F EMK  G+ PT  ++ +L+ AYS+       E ++ +
Sbjct: 379 SIYNTIMNVYCKCSQIEEAEGLFAEMKEKGLKPTKVTYNILMDAYSRRLQPEVVESLLLE 438

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQF-EKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           MH  G +P+    N +++ YGR  +  EK E+    M+KG   A  S+Y  LI  Y   G
Sbjct: 439 MHDLGFQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVSG 498

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGC 210
             EK    +  +  + LKP + T+T+ L  + R     + +E ++ M D   GC
Sbjct: 499 QYEKAHIAYLDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTDEKVGC 552



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 1/179 (0%)

Query: 55  FSDAHAVFEEMKRLGITPT-MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + DA  +FE M++  + P  + S ++LL    +  +         +M++ G+K    V  
Sbjct: 288 YDDAWKIFESMEKNNVQPDHVTSSIMLLVMKRRKASAKDSWKFFQRMNRKGVKWSLGVSA 347

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++ ++   G  ++     + MEK    ++ S YN ++N+Y +   IE+ EGLF  +  K
Sbjct: 348 SLIKIFCDEGMKKEALIFQSEMEKRGIPSNTSIYNTIMNVYCKCSQIEEAEGLFAEMKEK 407

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            LKP  VT+   + AYSR+        +  EM D G  P+  +   LISA   + ++ +
Sbjct: 408 GLKPTKVTYNILMDAYSRRLQPEVVESLLLEMHDLGFQPNARSYNCLISAYGRQKKMSE 466



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 2/203 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM++ GI      +  ++  Y K   + + EG+  +M + GLKP     N +++ Y R  
Sbjct: 368 EMEKRGIPSNTSIYNTIMNVYCKCSQIEEAEGLFAEMKEKGLKPTKVTYNILMDAYSRRL 427

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI-EKMEGLFQSLPAKRLKPDVVTW 182
           Q E +E +L  M    +  +  +YN LI+ YGR   + EK E  F  +    +K    ++
Sbjct: 428 QPEVVESLLLEMHDLGFQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSY 487

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           TS + AY+    Y +    + +M   G  P   T   L+         E++    ++M  
Sbjct: 488 TSLICAYAVSGQYEKAHIAYLDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTD 547

Query: 243 DMKTALPIYFNLYGEKGVARSNL 265
           +      + F++  + G+A+  L
Sbjct: 548 EKVGCTRVTFHMVLD-GLAKHGL 569



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 1/178 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVA-KCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EM  LG  P  +S+  L++AY +   ++ K E    +M K G+K  +    S++  Y   
Sbjct: 438 EMHDLGFQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVS 497

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           GQ+EK       M++      + TY  L++I+ R G  EK+   ++S+  +++    VT+
Sbjct: 498 GQYEKAHIAYLDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTF 557

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              L   ++  L+ +  ++  E    G  P   T  +L++A +   Q  ++  L++ M
Sbjct: 558 HMVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEM 615


>gi|218189272|gb|EEC71699.1| hypothetical protein OsI_04200 [Oryza sativa Indica Group]
          Length = 338

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F D  A+F+ M+  G+     + + +++A ++ G+ +  + ++  +    ++ D ++ N+
Sbjct: 147 FKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNT 206

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +GR GQ +  E+V   M+      +I T N +I  Y +G  I     +F  +P   
Sbjct: 207 LVDYFGRRGQLQSAEKVFFNMK----VRNIVTMNAMIAAYAKGQDIVSARKIFDQIP--- 259

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            K D+++W+S ++ YS+   +   LEIF +M  A   PD      ++S+C+
Sbjct: 260 -KKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCA 309



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 14/211 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH VF+++K     PT     +L+   +++   A       +    G+ PD      +L 
Sbjct: 18  AHKVFDQIK----APTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 73

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R+    + E++   + K    +DI   N LI++Y   G +     +F  +  K    
Sbjct: 74  ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK---- 129

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV+W S +  YS+   ++  L +F+ M + G   D  T   ++SAC+          +V
Sbjct: 130 DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMV 189

Query: 238 RTMHKDMKTALPIYF-----NLYGEKGVARS 263
           R + +D    + +Y      + +G +G  +S
Sbjct: 190 RYI-EDYCIEVDVYLGNTLVDYFGRRGQLQS 219


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++T Y+K+G       + N M +S + PD +V++S+LN    LG  +  +++   + +  
Sbjct: 214 IITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSE 273

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+STYN+LI+ Y + G ++  + LF  L  K    ++++WT+ +A Y +       +
Sbjct: 274 TKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVK----NIISWTTMIAGYMQNSYDWEAV 329

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           E+  EM   G  PD      ++++C S D ++ 
Sbjct: 330 ELVGEMFRMGWKPDEYACSSVLTSCGSVDALQH 362



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 80/156 (51%), Gaps = 4/156 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  ++ +++     P   +   L TA S   ++   +   NQ+ K GL+ D F+ N+++
Sbjct: 529 EAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALV 588

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           ++Y + G  E+ E++ ++    S   D + +N +I++Y + G +E+   +F+++ +  + 
Sbjct: 589 DMYAKCGSVEEAEKIFSS----SVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNIN 644

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           P+ VT+ S L+A S        L+ +  M   G  P
Sbjct: 645 PNYVTFVSVLSACSHVGFVEDGLQHYNSMARYGIEP 680



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+ F   ++      L      ++    + K    +D    N L+++Y + G +E+ E 
Sbjct: 543 RPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEK 602

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +F S   K    D   W S ++ Y++       L +FE M+     P+  T   ++SACS
Sbjct: 603 IFSSSVWK----DTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACS 658

Query: 226 S----EDQIEQVTTLVR 238
                ED ++   ++ R
Sbjct: 659 HVGFVEDGLQHYNSMAR 675



 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 7/175 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  +  EM R+G  P   +   +LT+      +     + + + K  L+ D FV N
Sbjct: 324 YDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTN 383

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++++Y +    +  + V   +   S    +  YN +I  Y R G++     +FQ +  K
Sbjct: 384 ALIDMYSKCNALDDAKRVFDVVTCHS----VVYYNAMIEGYSRQGYLCGALEVFQEMRLK 439

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI---SACS 225
            + P  +T+ S L   +     +   +I   +I  G   D  T+  LI   S CS
Sbjct: 440 HVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCS 494



 Score = 41.6 bits (96), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           K + +++ S++    +    E   +V + + K  +  D+     L+ +Y + G I+K   
Sbjct: 139 KLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARL 198

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +F  L  K   P  VTWT+ +  Y++       L++F  M+++   PD      +++ACS
Sbjct: 199 VFDGLVLK--TP--VTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACS 254


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 100/235 (42%), Gaps = 1/235 (0%)

Query: 19  HSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHM 78
           H  N +    P H  L NF  ++   NL   + +    +     E M   G  P +    
Sbjct: 65  HLGNGHVSLSPIH-SLTNFEEIESNNNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCT 123

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
            L+  + K G   K   ++  +  SG  PD    N +++     G++   E++L  M + 
Sbjct: 124 SLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRR 183

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
             +  + T+NILIN   R G + +   + + +P     P+ +++   L  + ++K   R 
Sbjct: 184 GCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERA 243

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           +E   +M   GCYPD  T   L++A   + +++    L+  +     + + I +N
Sbjct: 244 IEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYN 298



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 86/201 (42%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L + P L  F        A     +M   G  P + ++  LLTA  K G V     ++NQ
Sbjct: 225 LSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQ 284

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +   G  P     N++++   ++G+ ++  ++L  M       DI TY+ L+    R G 
Sbjct: 285 LSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGK 344

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++    F  L    +KP+ +T+ + +    + +   R ++    M+  GC P   +  +
Sbjct: 345 VDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTI 404

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI   + E   ++   L+  +
Sbjct: 405 LIEGLAYEGLAKEALELLNEL 425



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 82/176 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +M R G +P++ +  +L+    + G + +   V+ +M K G  P++   N +L
Sbjct: 172 DAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLL 231

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + +  + E+  E L  M       DI TYN L+    + G ++    L   L +K   
Sbjct: 232 HGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCS 291

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           P ++T+ + +   S+     +  ++ +EM   G  PD  T   L+   S E ++++
Sbjct: 292 PVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDE 347



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 101/234 (43%), Gaps = 11/234 (4%)

Query: 43  TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++  F   I F         A  V E+M + G TP   S+  LL  + K   + +   
Sbjct: 186 SPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIE 245

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            + +M   G  PD    N++L    + G+ +   E+L  +     +  + TYN +I+   
Sbjct: 246 YLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 305

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  ++   L   + AK LKPD++T++S +   SR+      ++ F ++   G  P+  
Sbjct: 306 KVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAI 365

Query: 216 TAKV----LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
           T       L  A  ++  I+ +  +V+   K  + +  I       +G+A+  L
Sbjct: 366 TYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEAL 419



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 3/206 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E ++  G  P + ++ +L++    TG     E ++  M + G  P     N ++N
Sbjct: 138 ATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILIN 197

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G   +  +VL  M K     +  +YN L++ + +   +E+       + ++   P
Sbjct: 198 FLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYP 257

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+VT+ + L A  +       +E+  ++   GC P   T   +I   S   + +Q   L+
Sbjct: 258 DIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLL 317

Query: 238 RTMH-KDMKTALPIYFNLYGEKGVAR 262
             M  K +K  +  Y +L G  G++R
Sbjct: 318 DEMRAKGLKPDIITYSSLVG--GLSR 341


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 4/213 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + EM   G+     +           G   K   VI +M   G  PDT   + +LN
Sbjct: 432 AEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLN 491

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 + E    +   M++G   AD+ TY I+++ + + G IE+    F  +      P
Sbjct: 492 YLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTP 551

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVT+T+ + AY + K      E+FE M+  GC P+  T   LI       Q+E+   + 
Sbjct: 552 NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF 611

Query: 238 RTM--HKDMKTALPIYFNLYGEKGVARSNLGQY 268
             M   KD+   + +YF  Y +    R N+  Y
Sbjct: 612 ERMCGSKDVPD-VDMYFKQYDDNS-ERPNVVTY 642



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 85/186 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + + M   G  P    +  L+    K G + + + V  +M + G     +  +S++
Sbjct: 657 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 716

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y ++ + +   +VL+ M + S A ++  Y  +I+   + G  ++   L Q +  K  +
Sbjct: 717 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 776

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VVT+T+ +  +        CLE+ E M   G  P+  T +VLI  C     ++    L
Sbjct: 777 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 836

Query: 237 VRTMHK 242
           +  M +
Sbjct: 837 LEEMKQ 842



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 4/176 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS A      +K     P+  ++  L+ A+ K   +     +  +M  + L+ D F +  
Sbjct: 216 FSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRC 275

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
                 ++G   K  E LT +E  ++  D   Y  LI+        E+       + A  
Sbjct: 276 FAYSLCKVG---KWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATS 332

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQ 229
             P+VVT+++ L     KK   RC  +   M+  GCYP       L+ A C+S D 
Sbjct: 333 CLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDH 388



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 69/159 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A +V  EM   G  P   ++  +L        +     +  +M + GL  D +    
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ + + G  E+  +    M +     ++ TY  LI+ Y +   +     LF+++ ++ 
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             P++VT+++ +  + +     +  +IFE M  +   PD
Sbjct: 584 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 7/179 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A      M+     P + ++  LL        + +C+ V+N M   G  P   + NS
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-NIYGRGGFIE-KMEGLFQSLPA 172
           +++ Y   G      ++L  M K  +      YNILI +I G    +   +  L +   +
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYS 437

Query: 173 KRLKPDVVTWTSRLAAYSR----KKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSS 226
           + L   VV     +++++R       Y +   +  EMI  G  PD  T +KVL   C++
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA 496


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 91/189 (48%), Gaps = 6/189 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+ M  +G  P +  +  ++    K+  V     ++N+M   G++PD    NS++
Sbjct: 169 DALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLI 228

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +     G+++    +++ M K     D+ T+N LI+   + G I + E L++ +  + L 
Sbjct: 229 SGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLD 288

Query: 177 PDVVTWT---SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           PD+VT++     L  YSR        ++F  M+  GC+PD  T  +LI+      ++E  
Sbjct: 289 PDIVTYSLLIYGLCMYSR---LDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHG 345

Query: 234 TTLVRTMHK 242
             L   M +
Sbjct: 346 MKLFCEMSQ 354



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 73/153 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM + G+     ++ +L+  Y + G +   E +   M   G+ P+    N +L+   
Sbjct: 348 LFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLC 407

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+ EK   +L  M+K    ADI TYNI+I    + G +     L+ SL  K L PD+ 
Sbjct: 408 DNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIW 467

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           T+T+ +    +K L      +F +M + G  P+
Sbjct: 468 TYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 6/203 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +   M +  I P + +   L+ A  K G +++ E +  +M +  L PD    + 
Sbjct: 237 WDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSL 296

Query: 115 M---LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +   L +Y RL + E+M   + +  KG +  D+ TY+ILIN Y +   +E    LF  + 
Sbjct: 297 LIYGLCMYSRLDEAEQMFGFMVS--KGCFP-DVVTYSILINGYCKSKKVEHGMKLFCEMS 353

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            + +  + VT+T  +  Y R        EIF+ M+  G  P+  T  VL+       +IE
Sbjct: 354 QRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIE 413

Query: 232 QVTTLVRTMHKDMKTALPIYFNL 254
           +   ++  M K    A  + +N+
Sbjct: 414 KALVILADMQKSGMDADIVTYNI 436



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 76/180 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++E+M+ LGI   + +  +LL  + +   ++     + +M K G +PD     S+LN + 
Sbjct: 103 LWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFC 162

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R  +      +   M +  Y  ++  YN +I+   +   ++    L   +    ++PD V
Sbjct: 163 RGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAV 222

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ S ++       +     +   M     YPD  T   LI AC  E +I +   L   M
Sbjct: 223 TYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEM 282



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 75/188 (39%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D+  +F  M +    P++     LL+A SK         +  QM   G+  +    N 
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN + R  Q       L  M K  +  DI T+  L+N + RG  I     +F  +    
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMG 181

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +P+VV + + +    + K     L++   M   G  PD  T   LIS   +  + +  T
Sbjct: 182 YEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDAT 241

Query: 235 TLVRTMHK 242
            +V  M K
Sbjct: 242 RMVSCMTK 249



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A +   +M +LG  P + +   LL  + +   +     + ++M + G +P+  + N+
Sbjct: 132 LSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNT 191

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  Q +   ++L  ME      D  TYN LI+     G  +    +   +  + 
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKRE 251

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SAC--SSEDQIE 231
           + PDV T+ + + A  ++       E++EEMI     PD  T  +LI   C  S  D+ E
Sbjct: 252 IYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAE 311

Query: 232 QV 233
           Q+
Sbjct: 312 QM 313



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 7/214 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  ++EEM R  + P + ++ LL+        + + E +   M   G  PD    + 
Sbjct: 272 ISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSI 331

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y +  + E   ++   M +     +  TY +LI  Y R G +   E +F+ +    
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCG 391

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+++T+   L          + L I  +M  +G   D  T  ++I       ++    
Sbjct: 392 VPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAW 451

Query: 235 TL-----VRTMHKDMKTALPIYFNLY--GEKGVA 261
            L     ++ +  D+ T   +   LY  G +G A
Sbjct: 452 DLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEA 485



 Score = 37.4 bits (85), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/137 (18%), Positives = 56/137 (40%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           P     + +L+   ++ +++ +  +   M+      ++ T NIL+N + R   +      
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
              +     +PD+VT+ S L  + R       L +F+ M++ G  P+      +I     
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 227 EDQIEQVTTLVRTMHKD 243
             Q++    L+  M  D
Sbjct: 199 SKQVDNALDLLNRMEVD 215


>gi|8778411|gb|AAF79419.1|AC025808_1 F18O14.1 [Arabidopsis thaliana]
          Length = 689

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VFE +K   +      + +L+  Y +TG +     V + M + G++ +T + NS
Sbjct: 97  MEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNS 156

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y + GQ  + E++ + M   S   D  TYN L++ Y R G++++   L   +  K 
Sbjct: 157 LINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKE 216

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + P V+T+   L  YSR   +   L +++ M+  G   D  +   L+ A
Sbjct: 217 VVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEA 265



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 2/164 (1%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKM 128
           ++P + +  +++ AY ++GNV K      +   S GL+ +    NS++N Y  +G  E M
Sbjct: 6   VSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGM 65

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             VL  M +   + ++ TY  LI  Y + G +E+ E +F+ L  K+L  D   +   +  
Sbjct: 66  TRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDG 125

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
           Y R    R  + + + MI+ G   +      LI+  C S   +E
Sbjct: 126 YCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVE 169



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 88/185 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V + M  +G+         L+  Y K+G + + E + ++M+   LKPD    N+++
Sbjct: 134 DAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLV 193

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G  ++  ++   M +      + TYNIL+  Y R G    +  L++ +  + + 
Sbjct: 194 DGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVN 253

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D ++ ++ L A  +   +   ++++E ++  G   D  T  V+IS     +++ +   +
Sbjct: 254 ADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEI 313

Query: 237 VRTMH 241
           +  ++
Sbjct: 314 LDNVN 318



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 75/182 (41%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V   M   G++  + ++  L+  Y K G + + E V   + +  L  D  +   +++ Y 
Sbjct: 68  VLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYC 127

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R GQ      V   M +     + +  N LIN Y + G + + E +F  +    LKPD  
Sbjct: 128 RTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHH 187

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ + +  Y R       L++ ++M      P   T  +L+   S       V +L + M
Sbjct: 188 TYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMM 247

Query: 241 HK 242
            K
Sbjct: 248 LK 249



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M    + P   ++  L+  Y + G V +   + +QM +  + P     N +L
Sbjct: 169 EAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILL 228

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
             Y R+G F  +  +   M ++G  A +IS   +L  ++  G F E M+ L++++ A+ L
Sbjct: 229 KGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMK-LWENVLARGL 287

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
             D +T    ++   + +      EI + +    C P   T + L
Sbjct: 288 LTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQAL 332



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 2/199 (1%)

Query: 41  QHTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
            HT N  V  +  + Y  +A  + ++M +  + PT+ ++ +LL  YS+ G       +  
Sbjct: 186 HHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWK 245

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M K G+  D    +++L    +LG F +  ++   +       D  T N++I+   +  
Sbjct: 246 MMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKME 305

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            + + + +  ++   R KP V T+ +    Y +    +    + E M   G +P      
Sbjct: 306 KVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYN 365

Query: 219 VLISACSSEDQIEQVTTLV 237
            LIS       + +V  LV
Sbjct: 366 TLISGAFKYRHLNKVADLV 384



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 2/186 (1%)

Query: 57  DAHAVF--EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           D   VF  E    LG+   + ++  L+  Y+  G+V     V+  M + G+  +     S
Sbjct: 27  DKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTS 86

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y + G  E+ E V   +++    AD   Y +L++ Y R G I     +  ++    
Sbjct: 87  LIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIG 146

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ +     S +  Y +        +IF  M D    PD  T   L+        +++  
Sbjct: 147 VRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEAL 206

Query: 235 TLVRTM 240
            L   M
Sbjct: 207 KLCDQM 212



 Score = 37.4 bits (85), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 87/200 (43%), Gaps = 1/200 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++A  ++E +   G+     +  ++++   K   V + + +++ ++    KP      +
Sbjct: 272 FNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQA 331

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           + + Y ++G  ++   V   ME+      I  YN LI+   +   + K+  L   L A+ 
Sbjct: 332 LSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARG 391

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P V T+ + +  +    +  +      EMI+ G   +      + ++    D+I++  
Sbjct: 392 LTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEAC 451

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            L++ +  D    LP Y +L
Sbjct: 452 LLLQKI-VDFDLLLPGYQSL 470


>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
 gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
          Length = 626

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ EM R+G+ P   +  +L   + K G++ K    + +M + G +PD    N+++N Y 
Sbjct: 239 VYGEMGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYC 298

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+      +   M +     D+ +Y  L+N   + G + +   L   +  + L PDVV
Sbjct: 299 GRGRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVV 358

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++ + +  Y ++        +  EMI  G +PD  T +VLI     E  +     LV  +
Sbjct: 359 SYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVEL 418

Query: 241 HK 242
            K
Sbjct: 419 EK 420



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 54/245 (22%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH +   M   G+ P + S+  L+  Y K G + + + ++ +M  +G+ PD+F    ++
Sbjct: 340 EAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLI 399

Query: 117 NLYGRLG----------QFEKM-------------------------EEVLTAMEKGSYA 141
             Y + G          + EK                          + +L  M +  Y 
Sbjct: 400 QGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMSQRGYI 459

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
             +  YN LI    +G  +     L   +    + P+++T+ + +    R        ++
Sbjct: 460 PHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINPNLLTYKALIRCLCRMGRSIEAEKL 519

Query: 202 FEEMIDAGCYP----------------DGGTAKVLISACSSEDQI---EQVTTLVRTMHK 242
            EEM+  G  P                D G A+ L+   + E QI   E  +TLVR + +
Sbjct: 520 MEEMLHFGLQPDPEICRAMIHGYCREKDAGKAESLLVLFAKEFQIFDSESYSTLVRIVCE 579

Query: 243 DMKTA 247
           D   A
Sbjct: 580 DGDVA 584



 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA ++  E+    I P + ++  L+    + G   + E ++ +M   GL+PD  +  +M
Sbjct: 479 ADALSLKAEIVVGNINPNLLTYKALIRCLCRMGRSIEAEKLMEEMLHFGLQPDPEICRAM 538

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y R     K E +L    K     D  +Y+ L+ I    G + K   L + +     
Sbjct: 539 IHGYCREKDAGKAESLLVLFAKEFQIFDSESYSTLVRIVCEDGDVAKFMELQERMLKVGF 598

Query: 176 KPDVVT 181
            P+ +T
Sbjct: 599 APNSLT 604


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S AH +F EM   G  P + ++ +L+   +K  N      +   M  +G KPD    + 
Sbjct: 507 LSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSI 566

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ + G  G  E+ E V   M++ ++  D   Y +LI+++G+ G +EK    + ++    
Sbjct: 567 VMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAG 626

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L P+V T  S L+A+ R         + + M+  G  P   T  +L+S C+
Sbjct: 627 LLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCT 677



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 102/209 (48%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + + E+M + G  P + ++  L+ +Y +   + +   V NQM + G +PD     +
Sbjct: 402 FGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCT 461

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +    +   M++   + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 462 LIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQG 521

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +A  ++ + Y+  L+++ +M +AG  PD  T  +++        +E+  
Sbjct: 522 CVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAE 581

Query: 235 TLVRTMHKDMKTA-LPIY---FNLYGEKG 259
            +   M ++      P+Y    +L+G+ G
Sbjct: 582 AVFFEMKQNNWVPDEPVYGLLIDLWGKAG 610



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 74/180 (41%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  VF +M+ +G  P   ++  L+  ++K G +     +  +M + GL PDTF  +
Sbjct: 436 YLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYS 495

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M+N  G+ G       +   M       +I TYNILI +  +    +    L++ +   
Sbjct: 496 VMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNA 555

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KPD VT++  +              +F EM      PD     +LI        +E+ 
Sbjct: 556 GFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKA 615



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 59/121 (48%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G   D     +M+ + GR  +F  + ++L  M K     ++ TYN LI+ YGR  ++ 
Sbjct: 379 QPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLG 438

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F  +     +PD VT+ + +  +++       + ++E M + G  PD  T  V+I
Sbjct: 439 EALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMI 498

Query: 222 S 222
           +
Sbjct: 499 N 499



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           V  +  Y  +A AVF EMK+    P    + LL+  + K GNV K     + M ++GL P
Sbjct: 570 VLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLP 629

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           +    NS+L+ + R+ +      +L  M        + TY +L++
Sbjct: 630 NVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLS 674


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 3/209 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   GI PT K++  LL   SK   + + + +  ++   G+ PD  + N++++
Sbjct: 415 AFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALID 474

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +      +   E+L  M++     D  T+N ++  + R G +E+   LF  +  + +KP
Sbjct: 475 GHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKP 534

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +++ + ++ YSR+   +    +  EM+D G  P   T   L+       + +    L+
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELL 594

Query: 238 RTM-HKDMKTALPIYFNLYGEKGVARSNL 265
           + M  K M      YF L   +G+A+ N+
Sbjct: 595 KEMVSKGMTPDDTTYFTLI--EGIAKVNI 621



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 87/188 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +FEEM + G+ P+   +  L+  +   GN+       ++M K G+ P     NS
Sbjct: 307 LEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNS 366

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++      + ++ E ++  +++   + D  TYNILIN Y R    +K   L   + A  
Sbjct: 367 LIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASG 426

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP   T+TS L   S+K   +   ++F+++   G  PD      LI    S   ++   
Sbjct: 427 IKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAF 486

Query: 235 TLVRTMHK 242
            L++ M +
Sbjct: 487 ELLKDMDR 494



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F  MK  G+ PT+++   LL+ + K         +  +M +  +K   +  N M+
Sbjct: 169 EAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMI 228

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N+  + G+ +K ++ +  ME      +I TYN +++ Y   G +E  + +  ++  ++++
Sbjct: 229 NVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIE 288

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD  T+ S ++   ++       +IFEEM+  G  P       LI  
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDG 335



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 93/208 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+   MKR  I P   ++  L++   K G + +   +  +M + GL+P   + N++++
Sbjct: 275 ADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID 334

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  +        M K   +  +STYN LI+        ++ E + + +  K + P
Sbjct: 335 GFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP 394

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+   +  Y R    ++   + +EM+ +G  P   T   L+   S ++++++   L 
Sbjct: 395 DAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLF 454

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSNL 265
           + +  +      I FN   +   + SN+
Sbjct: 455 KKITSEGVLPDAIMFNALIDGHCSNSNV 482


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 8/209 (3%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRL-------GITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PNL  +   I  S     FE+ K L       G+ P + S+  L+ A +K+GN+     
Sbjct: 146 SPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVE 205

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIY 154
           + ++M   G+ PD    N +++ + R G F K  E+   +  + S    + TYNI+IN  
Sbjct: 206 LFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGL 265

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G +++   ++  +      PD+ T++S +   S+   +    ++F+EMI++G  PD 
Sbjct: 266 CKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDV 325

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            T   ++S      ++ +   L   M K+
Sbjct: 326 RTYNAMLSGLFRTGKLNKCFELWNVMSKN 354



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 2/187 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVINSM 115
           DA  +F+EM   G+ P +  + +L+  + + G+  K   +  ++  +S + P     N M
Sbjct: 202 DAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIM 261

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   +LG+ ++  E+   M+K   + D+ T++ +I+   + G     E +FQ +    L
Sbjct: 262 INGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGL 321

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+ + L+   R     +C E++  M    C  +  +  +LI       ++EQ   
Sbjct: 322 SPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC-NIVSYNMLIQGLLDNKKVEQAIC 380

Query: 236 LVRTMHK 242
             + +H+
Sbjct: 381 YWQLLHE 387



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 1/199 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             ++  ++  MK+   +P + +   ++   SK GN    E V  +M +SGL PD    N+
Sbjct: 271 LDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNA 330

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+   R G+  K  E+   M K +   +I +YN+LI        +E+    +Q L  + 
Sbjct: 331 MLSGLFRTGKLNKCFELWNVMSKNN-CCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERG 389

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LK D  T+   +    +     + L I EE  + G   D      ++     +  +EQ  
Sbjct: 390 LKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAV 449

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M K+ +      FN
Sbjct: 450 ELIHQMKKNRRKLNSHVFN 468



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 90/191 (47%), Gaps = 2/191 (1%)

Query: 58  AHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +F+ M  + G  P ++S   +L A+ ++    + E        +G+ P+    N ++
Sbjct: 97  ALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILI 156

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +  +  QFEK + +LT M +     DI +Y  LIN   + G +     LF  +  + + 
Sbjct: 157 KISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVN 216

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           PDV+ +   +  + RK  + +  EI++ ++ ++  YP   T  ++I+      ++++   
Sbjct: 217 PDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESME 276

Query: 236 LVRTMHKDMKT 246
           +   M K+ K+
Sbjct: 277 MWNRMKKNEKS 287



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+     ++ LL+    K G + K   ++ +    G   DTF  +SM++   + G  E+ 
Sbjct: 389 GLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQA 448

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            E++  M+K     +   +N LIN Y R   +E+   + + + +K   P VV++ + +  
Sbjct: 449 VELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIING 508

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-RTMHKDMKTA 247
             + + +       +EM++ G  PD  T  +LI      ++++    L  + ++K +K  
Sbjct: 509 LCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPD 568

Query: 248 LPIY 251
           L ++
Sbjct: 569 LQMH 572



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 83/189 (43%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y + A  + EE +  G      ++  ++    K G + +   +I+QM K+  K ++ V N
Sbjct: 409 YLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFN 468

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++N Y R  + E+   VL  M+    A  + +YN +IN   +           + +  +
Sbjct: 469 SLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEE 528

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            LKPD++T++  +    R +     L ++ + I+    PD     ++I    +  +++  
Sbjct: 529 GLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVA 588

Query: 234 TTLVRTMHK 242
             +   M +
Sbjct: 589 LEIFTQMRQ 597



 Score = 44.7 bits (104), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 10/190 (5%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           ++ +    +A +V  EMK     PT+ S+  ++    K    +     + +M + GLKPD
Sbjct: 474 YVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPD 533

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEK---GSYAADISTYNILINIYGRGGFIEKMEG 165
               + +++    L + EK++  L    +        D+  +NI+I+       ++    
Sbjct: 534 MITYSLLID---GLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALE 590

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD----GGTAKVLI 221
           +F  +      PD+VT  + +    +       L+I++ +++AG  PD      T K L 
Sbjct: 591 IFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLC 650

Query: 222 SACSSEDQIE 231
           S     D IE
Sbjct: 651 SCARVSDAIE 660


>gi|297834130|ref|XP_002884947.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330787|gb|EFH61206.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 528

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 92/189 (48%), Gaps = 1/189 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSG 104
           + ++ +S     AH +F+EM  L    T+KS   LL+AY  +  + + +    ++  K G
Sbjct: 132 MLLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSRKLDEAKKAFKELPEKLG 191

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           + PD    N+M+    R G  + +  +   +EK  +  D+ ++N L+  + R     + +
Sbjct: 192 ITPDLVTYNTMIKALCRTGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGD 251

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            ++  + +K L P++ ++ SR+   +R K +   +++   M   G  PD  T    I+A 
Sbjct: 252 RIWDLMKSKNLAPNIRSYNSRVRGLTRNKKFTDAIDLINVMKTEGISPDVHTYNAFITAY 311

Query: 225 SSEDQIEQV 233
             ++ +E+V
Sbjct: 312 RGDNNLEEV 320



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 84/177 (47%), Gaps = 1/177 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           L  ++ S    +A   F+E+ ++LGITP + ++  ++ A  +TG++     +  ++ K+G
Sbjct: 167 LSAYVNSRKLDEAKKAFKELPEKLGITPDLVTYNTMIKALCRTGSMDDILSIFEELEKNG 226

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            +PD    N++L  + R   F + + +   M+  + A +I +YN  +    R        
Sbjct: 227 FEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLAPNIRSYNSRVRGLTRNKKFTDAI 286

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            L   +  + + PDV T+ + + AY         ++ + EM + G  PD  T  +LI
Sbjct: 287 DLINVMKTEGISPDVHTYNAFITAYRGDNNLEEVMKWYNEMKEKGLTPDTVTYCLLI 343



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 78/182 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D  ++FEE+++ G  P + S   LL  + +     + + + + M    L P+    NS +
Sbjct: 214 DILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLAPNIRSYNSRV 273

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  +F    +++  M+    + D+ TYN  I  Y     +E++   +  +  K L 
Sbjct: 274 RGLTRNKKFTDAIDLINVMKTEGISPDVHTYNAFITAYRGDNNLEEVMKWYNEMKEKGLT 333

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+   +    +K    R +EI EE I           K ++       +I++ T L
Sbjct: 334 PDTVTYCLLIPLLCKKGDLDRAVEISEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQL 393

Query: 237 VR 238
           V+
Sbjct: 394 VK 395


>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           micromera]
          Length = 434

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EMK  G+ P   S+  LLT Y +     +   V +
Sbjct: 85  LVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYXENKKFLEALSVFS 144

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 145 EMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 204

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM   G  P+  T  
Sbjct: 205 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 264

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 265 TIISIWGKXGKLDRAAMLFQKLR 287



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 82/151 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 66  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 125

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V + M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 126 LLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 185

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 186 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 216



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 76/164 (46%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F+EM++  ++P   ++  L+T + K G        + +M +  +  D  + ++++ L 
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 60

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +   + K   + + +++  +  D+  YN +IN++G+     +   L   +    + P+ 
Sbjct: 61  RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            ++++ L  Y   K +   L +F EM +  C  D  T  ++I  
Sbjct: 121 TSYSTLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDV 164



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 173 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMI 232

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 233 MIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVE 292

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D + + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 293 IDQILFQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDTAIHILAGAGRIEEATYV 348

Query: 237 VR 238
            R
Sbjct: 349 FR 350



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 86/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y + G   + + +   M K G++P+    N+
Sbjct: 136 FLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 195

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN +I IYG+    EK   L Q + ++ 
Sbjct: 196 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG 255

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 256 IEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 304



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 6/173 (3%)

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           G+ ++M +  L PD +  ++++  +G+ G F+     L  ME+     D+  Y+ LI + 
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 60

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            +     K   +F  L      PD+V + + +  + + KL+R    +  EM  AG  P+ 
Sbjct: 61  RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP-----IYFNLYGEKGVAR 262
            +   L++      +  +  ++   M +++K  L      I  ++YG+ G+A+
Sbjct: 121 TSYSTLLTMYXENKKFLEALSVFSEM-REIKCXLDLTTCNIMIDVYGQLGMAK 172



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 95/203 (46%), Gaps = 8/203 (3%)

Query: 43  TPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N  + I+  ++    A+ + +EM+  GI P   ++  +++ + K G + +   +  ++
Sbjct: 227 TYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKL 286

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             SG++ D  +  +M+  Y R G     + +L  +++     D    +  I+I    G I
Sbjct: 287 RSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRI 342

Query: 161 EKMEGLF-QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           E+   +F Q++ A  +K D+  +   +   S+ K Y   +E+F++M   G +PD     V
Sbjct: 343 EEATYVFRQAIDAGEVK-DITVFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSNVIAV 401

Query: 220 LISACSSEDQIEQVTTLVRTMHK 242
           +++A     + ++   +   M +
Sbjct: 402 VLNAYGKLQEFDKANDVYMEMQE 424


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 1/190 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           ++  A  +F+EMK  G+ PT K +  LL  Y K   V K   VI +M   G     F   
Sbjct: 249 HYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYT 308

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
             +   G+ G+ +    V   M K     D+   N LINI G+ G +E    LF+ + + 
Sbjct: 309 EWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESW 368

Query: 174 RLKPDVVTWTSRLAA-YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + KP+VVT+ + + A +  K         FE+M   G  P   T  +LI      ++IE+
Sbjct: 369 QCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEK 428

Query: 233 VTTLVRTMHK 242
              L+  M +
Sbjct: 429 ALLLLEEMDE 438



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 80/151 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A+ +F E+K      + + + +++  + K G +++   + N+M K G KPD +  N+
Sbjct: 461 YEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNA 520

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R G  ++ + +L  M++   + D++++NI++N   R G  ++   +F  + +  
Sbjct: 521 LMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSI 580

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +KPD V++ + L   S   L+    ++  EM
Sbjct: 581 IKPDAVSYNTVLGCLSHAGLFEEAAKLMREM 611



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 81/168 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A + FE+MK  GI P+  ++ +L+  + KT  + K   ++ +M + G  P      S+
Sbjct: 392 SEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSL 451

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N  G++ ++E   E+   +++    +    Y ++I  +G+ G + +   LF  +     
Sbjct: 452 INSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGS 511

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           KPDV  + + ++   R  +      +   M + GC PD  +  ++++ 
Sbjct: 512 KPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNG 559



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 1/171 (0%)

Query: 54  YFSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +    H ++ EM   G   P   ++  L++A+ K G+      + ++M ++GL P   + 
Sbjct: 213 HLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIY 272

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            ++L +Y +L + EK  +V+  M+       + TY   I   G+ G ++    +F  +  
Sbjct: 273 TTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIK 332

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              KPDVV   S +    +       L++F +M    C P+  T   +I A
Sbjct: 333 DGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKA 383



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 1/185 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSML 116
           A +VF ++K     P   ++  ++    + G++ K   + N+M   G   PDT   ++++
Sbjct: 182 ALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALI 241

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +G+LG ++    +   M++         Y  L+ IY +   +EK   + + +  K   
Sbjct: 242 SAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCT 301

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             V T+T  +    +         +F +MI  GC PD      LI+      ++E    L
Sbjct: 302 LTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKL 361

Query: 237 VRTMH 241
            R M 
Sbjct: 362 FRKME 366



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 99/277 (35%), Gaps = 76/277 (27%)

Query: 43  TPNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           T  ++  +  IYF       A  V +EMK  G T T+ ++   +    K G V     V 
Sbjct: 268 TAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVF 327

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN--------- 148
             M K G KPD  +INS++N+ G++G+ E   ++   ME      ++ TYN         
Sbjct: 328 LDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFEC 387

Query: 149 ---------------------------ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
                                      ILI+ + +   IEK   L + +  K   P    
Sbjct: 388 KAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAA 447

Query: 182 WTSRLAAYSRKKLYR-----------------------------RC------LEIFEEMI 206
           + S + +  + K Y                              +C      +++F EM 
Sbjct: 448 YCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEME 507

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             G  PD      L+S       I++  +L+RTM ++
Sbjct: 508 KLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDEN 544



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKGSYAADI 144
           K   V K   V  Q+     KP     NSM+ +  + G  EK+ E+   M   G+   D 
Sbjct: 175 KAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDT 234

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
            TY+ LI+ +G+ G  +    LF  +    L P    +T+ L  Y +     + L++ +E
Sbjct: 235 VTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKE 294

Query: 205 MIDAGC 210
           M D GC
Sbjct: 295 MKDKGC 300



 Score = 42.0 bits (97), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY-NILINIYGRGGFIEKMEGL 166
           D+    ++++     G + +M + +  M + S     S Y + ++ + G+   + K   +
Sbjct: 126 DSSSFMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSV 185

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACS 225
           F  +  ++ KP   T+ S +    ++    +  EI+ EM  D  C+PD  T   LISA  
Sbjct: 186 FYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFG 245

Query: 226 SEDQIEQVTTLVRTMHKD--------MKTALPIYFNL 254
                +    L   M ++          T L IYF L
Sbjct: 246 KLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKL 282


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 3/209 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   GI PT K++  LL   SK   + + + +  ++   G+ PD  + N++++
Sbjct: 415 AFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALID 474

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +      +   E+L  M++     D  T+N ++  + R G +E+   LF  +  + +KP
Sbjct: 475 GHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKP 534

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +++ + ++ YSR+   +    +  EM+D G  P   T   L+       + +    L+
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELL 594

Query: 238 RTM-HKDMKTALPIYFNLYGEKGVARSNL 265
           + M  K M      YF L   +G+A+ N+
Sbjct: 595 KEMVSKGMTPDDTTYFTLI--EGIAKVNI 621



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 87/188 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +FEEM + G+ P+   +  L+  +   GN+       ++M K G+ P     NS
Sbjct: 307 LEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNS 366

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++      + ++ E ++  +++   + D  TYNILIN Y R    +K   L   + A  
Sbjct: 367 LIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASG 426

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KP   T+TS L   S+K   +   ++F+++   G  PD      LI    S   ++   
Sbjct: 427 IKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAF 486

Query: 235 TLVRTMHK 242
            L++ M +
Sbjct: 487 ELLKDMDR 494



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F  MK  G+ PT+++   LL+ + K         +  +M +  +K   +  N M+
Sbjct: 169 EAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMI 228

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N+  + G+ +K ++ +  ME      +I TYN +++ Y   G +E  + +  ++  ++++
Sbjct: 229 NVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIE 288

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD  T+ S ++   ++       +IFEEM+  G  P       LI  
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDG 335



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 93/208 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+   MKR  I P   ++  L++   K G + +   +  +M + GL+P   + N++++
Sbjct: 275 ADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID 334

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  +        M K   +  +STYN LI+        ++ E + + +  K + P
Sbjct: 335 GFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP 394

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+   +  Y R    ++   + +EM+ +G  P   T   L+   S ++++++   L 
Sbjct: 395 DAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLF 454

Query: 238 RTMHKDMKTALPIYFNLYGEKGVARSNL 265
           + +  +      I FN   +   + SN+
Sbjct: 455 KKITSEGVLPDVIMFNALIDGHCSNSNV 482



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 72/159 (45%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  G+ P + ++  ++  Y  +G V   + ++  M +  ++PD+F   S+++   + G+
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGR 306

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E+  ++   M +         YN LI+ +   G ++        +  K + P + T+ S
Sbjct: 307 LEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNS 366

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            + A   ++       + +E+ + G  PD  T  +LI+ 
Sbjct: 367 LIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILING 405


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM   G+     +   +++ YS+ G       +  QM  SG+ PD F + S+L+   
Sbjct: 213 LFDEMPVKGLI----TWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCA 268

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            LG  +   EV   +E   +  ++   N  I++Y R G + K   +F  +P K L    V
Sbjct: 269 HLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSL----V 324

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +WT+ +  Y    +    L +F++MI  G  PDG    +++SACS     ++   L R M
Sbjct: 325 SWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAM 384

Query: 241 HKDMK 245
            ++ K
Sbjct: 385 KREYK 389



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 21/192 (10%)

Query: 44  PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P +   + S+Y      +DA  VFEE  +   +     +  L++ Y+    V     +  
Sbjct: 88  PFVLTALISMYCKCGLVADARKVFEENPQ--SSQLSVCYNALISGYTANSKVTDAAYMFR 145

Query: 99  QMHKSGLKPDTFVINSMLNL-----YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M ++G+  D+  +  ++ L     Y  LG+    + V     KG   ++++  N  I +
Sbjct: 146 RMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCV-----KGGLDSEVAVLNSFITM 200

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           Y + G +E    LF  +P K L    +TW + ++ YS+  L    LE++E+M  +G  PD
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGL----ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPD 256

Query: 214 GGTAKVLISACS 225
             T   ++S+C+
Sbjct: 257 PFTLVSVLSSCA 268



 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 37/164 (22%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV--------------------- 96
            H V + ++  G  P +      ++ Y++ GN+AK   V                     
Sbjct: 276 GHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGM 335

Query: 97  ----------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
                      + M K G++PD  V   +L+     G  +K  E+  AM++  Y  +   
Sbjct: 336 HGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKR-EYKLEPGP 394

Query: 147 --YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             Y+ L+++ GR G +++     +S+P   ++PD   W + L A
Sbjct: 395 EHYSCLVDLLGRAGRLDEAMEFIESMP---VEPDGAVWGALLGA 435


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M  LG+ P   +   LL A +K+    + + +   + K G   D +V  S++ +Y + G+
Sbjct: 94  MISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGR 153

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E   +V       S   D+ +Y  LI  Y   G+I   + +F  +P K    DVV+W +
Sbjct: 154 XEDARKVFDQ----SSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVK----DVVSWNA 205

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            ++ Y+    Y+  LE+F+EM+     PD  T   ++SAC+    IE
Sbjct: 206 LISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIE 252



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 91/178 (51%), Gaps = 8/178 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  +F+E+        + S   L++ Y++TGN  +   +  +M K+ +KPD   + 
Sbjct: 184 YIXSAQKMFDEIP----VKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMV 239

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L+   +    E   +V + ++   + +++   N LI++Y + G +E   GLF+ L  K
Sbjct: 240 TVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYK 299

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               DV++W + +  Y+   LY+  L +F+EM+ +G  P+  T   ++ AC+    I+
Sbjct: 300 ----DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAID 353



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 6/152 (3%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--GSYAADISTYNILINI 153
           +  +M +SG  P+   + S+L     LG  +    +   ++K     +   S    LI++
Sbjct: 323 LFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDM 382

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           Y + G IE  + +F S+  + L     +W + +  ++         +IF  M   G  PD
Sbjct: 383 YAKCGDIEAAQQVFDSMLNRSLS----SWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPD 438

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
             T   L+SACS    ++    + R+M +D K
Sbjct: 439 DITFVGLLSACSHSGMLDLGRHIFRSMTEDYK 470



 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M    +  ++ S   ++  ++  G       + ++M K G++PD      +L+
Sbjct: 392 AQQVFDSM----LNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLS 447

Query: 118 LYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                G  +    +  +M E       +  Y  +I++ G  G  ++ E +  S+    + 
Sbjct: 448 ACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSM---EMD 504

Query: 177 PDVVTWTSRLAA 188
           PD V W S L A
Sbjct: 505 PDGVIWCSLLKA 516


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 86/169 (50%), Gaps = 3/169 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A   F+EMK  G+ P ++S+ +LL+A S +G +A+   + + M  S   PD    N 
Sbjct: 157 LEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNV 213

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y ++GQ  + + ++  + K  Y  ++ TY+I+IN Y +   +E+   +F  +    
Sbjct: 214 LMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESN 273

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             P+ VT+ + +A + +  +    +++F EM   GC     T   LI +
Sbjct: 274 CVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDS 322



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++AHA+F  M     +P + ++ +L+  Y K G   + + ++ ++ K+G +P+ F  + +
Sbjct: 193 AEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSII 249

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y +L + E+  EV   M + +   +  T+N LI  + + G +E    LF  +     
Sbjct: 250 INCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGC 309

Query: 176 KPDVVTWTSRLAAYSRKK--LYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           K  +VT+ + + +  +K+  +Y   +++F ++  AG  P   T   LI
Sbjct: 310 KATIVTYNTLIDSLCKKRGGVYTA-VDLFNKLEGAGLTPTIVTYNSLI 356



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 2/190 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT-GNVAKCEGVINQMHKSGLKPDTFVIN 113
             DA  +F EM+++G   T+ ++  L+ +  K  G V     + N++  +GL P     N
Sbjct: 294 LEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYN 353

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++  +    +  +  +    ME G  A ++ TY+ILI+   +   +++     + + A 
Sbjct: 354 SLIQGFCDARRLSEAMQYFDEME-GKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAH 412

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P VVT+   +  + +    +  L  FE+M  AGC P+      LI      ++    
Sbjct: 413 GYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDG 472

Query: 234 TTLVRTMHKD 243
             L+  MH +
Sbjct: 473 LRLLCHMHAE 482



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 7/217 (3%)

Query: 41  QHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAY---SKTGN-VAKCEGV 96
            H   L  F  +    DA A  ++M++   +    ++ L+L      +K+ N + +    
Sbjct: 104 SHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEF 163

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M  SG++PD    + +L+     G+  +   + +AM   + + DI TYN+L++ Y +
Sbjct: 164 FKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAM---TCSPDIMTYNVLMDGYCK 220

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G   + + L + +     +P+V T++  +  Y +        E+F +MI++ C P+  T
Sbjct: 221 IGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVT 280

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
              LI+       +E    L   M K    A  + +N
Sbjct: 281 FNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYN 317



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 8/186 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+E+      P   ++ +L+  + K G + +   V + M  SGL P+   +N++L    
Sbjct: 19  LFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLC 78

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            +GQ     ++   M+ G +    +++NIL+  +   G +       Q +  ++    V 
Sbjct: 79  EIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDM--RKSSSSVA 136

Query: 181 TWTSRLA----AYSRKKLYR--RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           T T  L      +  K   R  + +E F+EM  +G  PD  +  +L+SA S   ++ +  
Sbjct: 137 TGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAH 196

Query: 235 TLVRTM 240
            L   M
Sbjct: 197 ALFSAM 202



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    E+MK  G TPT+ ++  L+  + K G +        +M  +G  P+T + N+++
Sbjct: 401 EAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLI 460

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +  +      +L  M       D+ TYN LI+       +E  + LF  +      
Sbjct: 461 DGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMAC---A 517

Query: 177 PDVVTW 182
           P+V T+
Sbjct: 518 PNVTTF 523



 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 81/207 (39%), Gaps = 9/207 (4%)

Query: 42  HTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           HT N+ +  F        A +VF +MK  G+ P   +   LL    + G ++    +  +
Sbjct: 33  HTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFRE 92

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY----G 155
           M      P +   N +L  +   G+       L  M K S +    TYN+++        
Sbjct: 93  MQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENK 152

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
               +E+    F+ + A  ++PD+ ++   L+A S          +F  M    C PD  
Sbjct: 153 SANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIM 209

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  VL+       Q  +  +L++ + K
Sbjct: 210 TYNVLMDGYCKIGQTYEAQSLMKEILK 236



 Score = 37.0 bits (84), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 24/117 (20%), Positives = 47/117 (40%)

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
           G +A +  TYN+LI  + +GG + +   +F  + +  L P+  T  + L           
Sbjct: 26  GLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSS 85

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
            L++F EM      P   +  +L+       ++      ++ M K   +     +NL
Sbjct: 86  ALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNL 142


>gi|297736068|emb|CBI24106.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 98/189 (51%), Gaps = 4/189 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V++E+   G  P   ++  ++  Y +    +K E + ++M K G        +SM+ 
Sbjct: 307 AAKVYDELILQGCEPGQVTYASIINVYCRMELYSKAEMMFSEMEKKGFNKCVVAYSSMVV 366

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YG+ G+  +   ++  M++     ++  YN L++++GR   + ++E L++ +  K++ P
Sbjct: 367 MYGKTGRLREAMRLVAKMKERGCKPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVP 426

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V++TS ++AYS+   +  C+  + E    G   D   A +++   S   +++++  L+
Sbjct: 427 DRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRVIAGIMVGIFSKSGRVDELVKLL 486

Query: 238 RTMHKDMKT 246
               +DMKT
Sbjct: 487 ----QDMKT 491



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 60/107 (56%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A  +F EM++ G    + ++  ++  Y KTG + +   ++ +M + G KP+ +V NS
Sbjct: 339 YSKAEMMFSEMEKKGFNKCVVAYSSMVVMYGKTGRLREAMRLVAKMKERGCKPNVWVYNS 398

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           +++++GR+    ++E++   M++     D  +Y  +I+ Y + G  E
Sbjct: 399 LMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFE 445



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/207 (18%), Positives = 84/207 (40%), Gaps = 38/207 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK---------------------- 92
           FS   AV++ MK  G+ P  +S+  ++ AY K  +  K                      
Sbjct: 126 FSSTIAVYDRMKSAGVVPNSESYYRIMEAYIKIRDYEKVVTLFQEFESRKIDSSPFSTQI 185

Query: 93  ----CEGV------------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
               CE +               M K G+  D+ V +S++  +  + + +  EE+    E
Sbjct: 186 YRILCESLGKMGRAFEALEFFRDMTKKGILEDSAVYSSLICSFASIREVKVAEELFREAE 245

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
           +     D   +  L+ +Y   G +E+   + +++   +++     + + +  +++K+  R
Sbjct: 246 EKKILRDPEVFLKLVLMYVEEGLMERTIEIVKAMKNVKIRVSDCIFCAIVNGFAKKRGLR 305

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISA 223
              ++++E+I  GC P   T   +I+ 
Sbjct: 306 AAAKVYDELILQGCEPGQVTYASIINV 332



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 52/113 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +++EMKR  + P   S+  +++AYSK G+   C    ++   +G   D  +   M+ ++ 
Sbjct: 415 LWKEMKRKKVVPDRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRVIAGIMVGIFS 474

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           + G+ +++ ++L  M+      D   Y   +N     G   +   L +S   K
Sbjct: 475 KSGRVDELVKLLQDMKTEGTGLDERLYRSALNALRDAGLQMQARWLQESFDTK 527



 Score = 40.4 bits (93), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 64/153 (41%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F +M + GI      +  L+ +++    V   E +  +  +  +  D  V   ++
Sbjct: 201 EALEFFRDMTKKGILEDSAVYSSLICSFASIREVKVAEELFREAEEKKILRDPEVFLKLV 260

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +Y   G  E+  E++ AM+          +  ++N + +   +     ++  L  +  +
Sbjct: 261 LMYVEEGLMERTIEIVKAMKNVKIRVSDCIFCAIVNGFAKKRGLRAAAKVYDELILQGCE 320

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           P  VT+ S +  Y R +LY +   +F EM   G
Sbjct: 321 PGQVTYASIINVYCRMELYSKAEMMFSEMEKKG 353


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 92/171 (53%), Gaps = 8/171 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  A+FE M+   +     + + +++A +  G+ +  + ++  + ++ ++ D ++ N+
Sbjct: 492 FKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNT 551

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y R+GQ +  E+V + M+      +  T N +I+ Y +GG +   + +F  +P K 
Sbjct: 552 LIDYYCRIGQLQSAEKVFSQMKD----KNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNK- 606

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
              D+++W+S + AYS+   +   LE+F +M  A   PD      ++SAC+
Sbjct: 607 ---DLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACA 654



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 81/152 (53%), Gaps = 4/152 (2%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +FSD+  +F +M+R  + P       +L+A +  G +   + + + + ++ +K DT + N
Sbjct: 623 HFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMEN 682

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++++ + G  ++  +V T ME+     D  ++N +I      GF ++   +F S+  +
Sbjct: 683 SLIDMFAKCGCMQEALQVFTEMEE----KDTLSWNSIILGLANNGFEDEALNIFYSMLTE 738

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             +P+ VT+   L A + K+L +  L+ FE M
Sbjct: 739 GPRPNEVTFLGVLIACANKRLVQEGLDHFERM 770



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+  Y++    A+   +   M   G+ P    + +++     LG     E +     K  
Sbjct: 43  LIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKG 102

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
             +D    N LI++Y + G ++    +F  +  +R   ++V+WTS ++ ++   L    L
Sbjct: 103 IMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRR---NLVSWTSIISGFAMHGLSVEAL 159

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           E+F EM  AG  P+  T   +I+ACS    +EQ     ++M
Sbjct: 160 ELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSM 200



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 8/186 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH VFE+++    +PT      LL   +++           +  + G+KPD      +L 
Sbjct: 363 AHKVFEQIE----SPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLK 418

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +    ++ E++ + + K  +  DI   N LI++Y   G +     +F  +  K    
Sbjct: 419 ACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVK---- 474

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV+W S +  YS++  ++  L +FE M       D  T   +ISAC+          +V
Sbjct: 475 DVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMV 534

Query: 238 RTMHKD 243
           R + ++
Sbjct: 535 RYIERN 540



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ AYS+  + +    +  QM ++ +KPD  VI S+L+    LG  +  + +   + + +
Sbjct: 614 MICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNN 673

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D    N LI+++ + G +++   +F  +  K    D ++W S +   +        L
Sbjct: 674 IKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEK----DTLSWNSIILGLANNGFEDEAL 729

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            IF  M+  G  P+  T   ++ AC+++  +++
Sbjct: 730 NIFYSMLTEGPRPNEVTFLGVLIACANKRLVQE 762



 Score = 44.3 bits (103), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           ++ ++N++I  +   G IE    LF  +P +    +VV+WT  +  Y+R  LY   + +F
Sbjct: 5   NVVSWNVVITGFAGWGEIEYARLLFDQMPCR----NVVSWTGLIDGYTRACLYAEAVALF 60

Query: 203 EEMIDAGCYPDGGTAKVLISACSS 226
             M+  G  P   T   ++ A S+
Sbjct: 61  RHMMAGGISPSEITVLAVVPAISN 84


>gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 712

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 5/203 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           FE M + G+ P   ++  +L  Y++ G V +   +  +   +G KPD    + +  ++G 
Sbjct: 247 FERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGE 306

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G ++ +  V   ME      ++  YN L+   G+ G      GLF+ +    + P+  T
Sbjct: 307 AGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKT 366

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            T+ +  Y + +  R  LE+++ M + G   D      L++ C+    +E+  TL R M 
Sbjct: 367 LTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMK 426

Query: 242 KDMKTALPIY-----FNLYGEKG 259
           + +      +      N+YG +G
Sbjct: 427 QSVHCKPDSWSYTAMLNIYGSQG 449



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+EM+ +G+ P +  +  LL A  K G      G+  +M +SG+ P+   + +++ +YG
Sbjct: 316 VFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYG 375

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDV 179
           +        E+   M++  +  D   YN L+N+    G +E+ E LF+ +      KPD 
Sbjct: 376 KARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCKPDS 435

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            ++T+ L  Y  +    + +++F+EM   G
Sbjct: 436 WSYTAMLNIYGSQGDVDKAMKLFDEMCKLG 465



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 1/169 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEM   GI P  K+   ++  Y K         +  +M ++G   D  + N++LN
Sbjct: 348 ARGLFEEMIESGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLN 407

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +G  E+ E +   M++  +   D  +Y  ++NIYG  G ++K   LF  +    ++
Sbjct: 408 MCADVGLVEEAETLFRDMKQSVHCKPDSWSYTAMLNIYGSQGDVDKAMKLFDEMCKLGVE 467

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            +V+ +T  +    R   +   + +F+  ++ G  PD      L+S  S
Sbjct: 468 LNVMGFTCLIQCLGRAMEFDDLVRVFDISVERGIKPDDRLCGCLLSVVS 516



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVI 112
           +  DA  +++ MK  G       +  LL   +  G V + E +   M +S   KPD++  
Sbjct: 379 WSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCKPDSWSY 438

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            +MLN+YG  G  +K  ++   M K     ++  +  LI   GR    + +  +F     
Sbjct: 439 TAMLNIYGSQGDVDKAMKLFDEMCKLGVELNVMGFTCLIQCLGRAMEFDDLVRVFDISVE 498

Query: 173 KRLKPD 178
           + +KPD
Sbjct: 499 RGIKPD 504



 Score = 44.7 bits (104), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 59/130 (45%)

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           E + +QM  +G+  D    +++++   +   ++K       M K     D  TY+ ++++
Sbjct: 209 EDLAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTGLMPDEVTYSAILDV 268

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           Y R G +E++  L++   A   KPD +T++     +     Y     +F+EM   G  P+
Sbjct: 269 YARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPN 328

Query: 214 GGTAKVLISA 223
                 L+ A
Sbjct: 329 LVVYNTLLEA 338


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 86/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A+ + + M + G TP + ++  ++    K G   +   ++ +  KSGL  D      
Sbjct: 420 FGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTI 479

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + R    ++   + + M K     D+ TYN+LI  + R   +E+ E LF+      
Sbjct: 480 LISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLG 539

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P   T+TS +  Y R       ++ F +M D GC PD  T   LIS   +E ++++  
Sbjct: 540 LLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEAC 599

Query: 235 TLVRTM 240
            L  TM
Sbjct: 600 QLYETM 605



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 75/173 (43%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  G+    +    ++      G V   E V ++M    + PD+     M+  Y R+G
Sbjct: 183 EMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMG 242

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           +   ++  L  M +  YA D +T  ++I+ +   GF+ +    F+      L P+++ ++
Sbjct: 243 RISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFS 302

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           S +    +    ++  E+ EEM+  G  P+  T   LI     +   E+   L
Sbjct: 303 SLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRL 355



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 38/216 (17%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSML 116
           A  + EEM R G  P + +H  L+    K G   K   +  ++ +S   KP+ +    M+
Sbjct: 317 AFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMI 376

Query: 117 NLY-----------------------------------GRLGQFEKMEEVLTAMEKGSYA 141
           N Y                                    + G F +  E++  M K  + 
Sbjct: 377 NGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFT 436

Query: 142 ADISTYNILIN-IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
            +I TYN +I+ +  +G F E  + L + L +  L  D VT+T  ++ + R+   ++ L 
Sbjct: 437 PNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSG-LHADKVTYTILISEFCRQTDNKQALA 495

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           IF  M   G  PD  T  VLI+    + ++E+   L
Sbjct: 496 IFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKL 531



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 1/189 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SD     ++M   G      +  L+++ +S+ G V +      +  + GL P+    +S+
Sbjct: 245 SDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSL 304

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL-PAKR 174
           +N   ++G  ++  E+L  M +  +  ++ T+  LI+   + G+ EK   LF  L  +  
Sbjct: 305 INGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDN 364

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+V T+T  +  Y +++   R   +   M + G  P+  T   LI          +  
Sbjct: 365 YKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAY 424

Query: 235 TLVRTMHKD 243
            L+  M K+
Sbjct: 425 ELMDLMGKE 433



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 51/211 (24%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+F  M ++G+ P M ++ +L+  + +   V + E +  +    GL P          
Sbjct: 493 ALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTK-------- 544

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                                       TY  +I  Y R G I      F  +     KP
Sbjct: 545 ---------------------------ETYTSMICGYCRDGHISSAIKFFHKMRDYGCKP 577

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP----------------DGGTAKVLI 221
           D +T+ + ++    +       +++E MID G  P                D  TA +++
Sbjct: 578 DSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIIL 637

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
                +  I  V TL+R +  + K  +   F
Sbjct: 638 ERLEKKLWIRTVNTLIRKLCSEKKVGVAALF 668



 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/128 (18%), Positives = 54/128 (42%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           ++   L   T V+  M+  +  +G+ ++   ++  M+           N +I++    GF
Sbjct: 149 LNNDNLDRATEVMQCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGF 208

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           ++  E +F  +  + + PD  ++   +  Y R           ++MI+ G   D  T  +
Sbjct: 209 VDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTL 268

Query: 220 LISACSSE 227
           +IS  S +
Sbjct: 269 MISTFSEK 276


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 107/228 (46%), Gaps = 18/228 (7%)

Query: 51  FSIYFS---------DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
           F+IY S         DA  VF+ M++ G  P   ++  LL+     G ++  + +  +M 
Sbjct: 53  FNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMI 112

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           K+G  PD    N++L+ + ++G+ ++  ++     K  +  D+ TYN LIN + +   ++
Sbjct: 113 KAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLD 172

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + + + Q + ++ L PDVVT+ S +    +     R  E    ++D G  P+  T   LI
Sbjct: 173 EAQRILQRMVSESLVPDVVTYNSLVNGLCKNG---RVDEARMLIVDKGFSPNVITYSTLI 229

Query: 222 SA-CSSEDQIEQVTTLVRTM-----HKDMKTALPIYFNLYGEKGVARS 263
           S  C    ++E    L+  M       D+ +   +   L  E+GV+ +
Sbjct: 230 SGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEA 277



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 5/214 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +   M+  G +P   S   L+    + G   K      +M K G+KP     N +
Sbjct: 380 DEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNIL 439

Query: 116 LNLYGRLGQFEKMEEVLT---AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           ++   +  Q  +++E +T   AM +     D+ TY+ LI+  G+ G ++    L  ++ A
Sbjct: 440 VDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEA 499

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           K   P+V T+ S ++           LE+F  M++ GC PD  T   +ISA   ++ +++
Sbjct: 500 KGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDK 559

Query: 233 VTTLVR-TMHKDMKTALPIYFNLY-GEKGVARSN 264
              L   ++   +     +YF+L  G   VAR +
Sbjct: 560 ALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVD 593



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 94/185 (50%), Gaps = 5/185 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKT---GNVAKCEGVINQMHKSGLKPDTFVINS 114
           A   F+EM + G+ PT+ ++ +L+    K    G + +   + + M + G  PD    ++
Sbjct: 417 AMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSA 476

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAK 173
           +++  G+ G+ +    +L AME      ++ TYN LI+ + G     E +E LF ++  K
Sbjct: 477 LIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALE-LFVAMVEK 535

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PD +T+ + ++A  ++++  + L +F+  ++AG  P  G    LI    +  ++++ 
Sbjct: 536 GCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEA 595

Query: 234 TTLVR 238
             L++
Sbjct: 596 LKLLQ 600



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 3/187 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  + ++M   G  P + SH  ++    K   V + E +++ M   G  P+    N+++
Sbjct: 346 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 405

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG---GFIEKMEGLFQSLPAK 173
               R G+++K       M K      + TYNIL++   +    G I++   LF ++  K
Sbjct: 406 CGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEK 465

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDVVT+++ +    +         +   M   GC P+  T   LIS     D++++ 
Sbjct: 466 GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEA 525

Query: 234 TTLVRTM 240
             L   M
Sbjct: 526 LELFVAM 532



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 88/188 (46%), Gaps = 3/188 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +F  + R G  P + ++ +L+    K   V +   + + + K GL+PD       
Sbjct: 275 SEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVF 334

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+ E    +L  M++     D+ ++N +IN   +   +++ E L   + AK  
Sbjct: 335 IDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGC 394

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSS--EDQIEQ 232
            P+ +++ + +    R   +++ +  F+EM+  G  P   T  +L+   C +  E +I++
Sbjct: 395 SPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 454

Query: 233 VTTLVRTM 240
             TL   M
Sbjct: 455 AITLFDAM 462



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 2/182 (1%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H V++++ R+  +P   +  +LL +  K+G + K    + Q+   GL  D    N  ++ 
Sbjct: 2   HTVYDKLVRI-YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISG 59

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
             R  +    + V   M K  +  +  TYN L++    GG +   + L++ +      PD
Sbjct: 60  LCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPD 119

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
           VVT+ + L  + +       L+IF+  +  G  PD  T   LI+     D++++   +++
Sbjct: 120 VVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQ 179

Query: 239 TM 240
            M
Sbjct: 180 RM 181



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 84/186 (45%), Gaps = 1/186 (0%)

Query: 69  GITPTMKSHMLLLTAYSKT-GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127
           G +P + ++  L++   +    +     ++ +M  +G KPD    N++++   R     +
Sbjct: 217 GFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSE 276

Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
             ++  ++ +  Y  ++ TYNILI+   +   + +   LF  L    L+PD +T+T  + 
Sbjct: 277 ALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 336

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247
              +       L + ++M + GC PD  +   +I+    E ++++   L+  M     + 
Sbjct: 337 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSP 396

Query: 248 LPIYFN 253
             I FN
Sbjct: 397 NAISFN 402



 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/198 (18%), Positives = 81/198 (40%), Gaps = 1/198 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A  + E+M   G  P + S+  L+   ++   V++   +   + + G +P+    N 
Sbjct: 239 LESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNI 298

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  +  +  E+ + + K     D  TY + I+   + G +E    + + +  K 
Sbjct: 299 LIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG 358

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQV 233
             PDVV+  + +    ++K       +   M   GC P+  +   LI   C +    + +
Sbjct: 359 CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAM 418

Query: 234 TTLVRTMHKDMKTALPIY 251
           TT    + + +K  +  Y
Sbjct: 419 TTFKEMLKRGVKPTVVTY 436


>gi|242042129|ref|XP_002468459.1| hypothetical protein SORBIDRAFT_01g046280 [Sorghum bicolor]
 gi|241922313|gb|EER95457.1| hypothetical protein SORBIDRAFT_01g046280 [Sorghum bicolor]
          Length = 790

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 1/181 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+  Y K G++ K     NQM + G+ P     NSM++++G+  + E++  ++  ME+  
Sbjct: 256 LIDTYGKAGHLEKVSDTFNQMLREGVAPSVVTFNSMIHVWGKHHRMEQVASLVRMMEEFQ 315

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TYNILI +Y     I+  E  +  +  + L PDVV+  + L  YS + +  +  
Sbjct: 316 CFPDTRTYNILIALYRESNDIDIAEYYYCKMKGENLVPDVVSCRTLLYGYSIRGMVTKAE 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT-ALPIYFNLYGEK 258
            + +EM + G   D  T   L     +   +EQ        H  M +       + +GEK
Sbjct: 376 ALLKEMDERGFVVDEYTQSALTRMYVNVGMLEQAWRWFDRFHHHMNSECFSANIDAFGEK 435

Query: 259 G 259
           G
Sbjct: 436 G 436



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 9/179 (5%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++ EM   G+ P   ++  L+    + G  +     +  M K GL PD   +N ++  + 
Sbjct: 160 LWHEMHSFGVAPDNSTYGTLINVCCQGGRESVALLWLGDMCKRGLMPDEVTMNIVMQAHK 219

Query: 121 RLGQFEKM--------EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           + G++E           + +  ME GS    + TYN LI+ YG+ G +EK+   F  +  
Sbjct: 220 KAGEYETAGLFFERWSSDSIRRME-GSSHYSLYTYNTLIDTYGKAGHLEKVSDTFNQMLR 278

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           + + P VVT+ S +  + +     +   +   M +  C+PD  T  +LI+     + I+
Sbjct: 279 EGVAPSVVTFNSMIHVWGKHHRMEQVASLVRMMEEFQCFPDTRTYNILIALYRESNDID 337



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 74/144 (51%), Gaps = 4/144 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E+MK + +      + +++++++K G++   E +  +M  SG++PD FV + +++ Y  
Sbjct: 514 LEKMKVVKLLSDCIPYSVVISSFAKIGDLRMAEYLFREMVMSGVRPDVFVYSILIDAYAE 573

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G  ++       M+K     +++ YN LI +Y + G++ +    ++ L  K L  + + 
Sbjct: 574 VGNVQQASAYFGLMKKDGLCENVTIYNSLIKLYTKVGYVAEARETYKLL--KSLDANAIL 631

Query: 182 WTSR--LAAYSRKKLYRRCLEIFE 203
           + S   +  YS   + +   E+FE
Sbjct: 632 YASNCMIDLYSDHCMVKEACEVFE 655



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 56/116 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM   G+ P +  + +L+ AY++ GNV +       M K GL  +  + NS++ 
Sbjct: 545 AEYLFREMVMSGVRPDVFVYSILIDAYAEVGNVQQASAYFGLMKKDGLCENVTIYNSLIK 604

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           LY ++G   +  E    ++     A +   N +I++Y     +++   +F+ L  +
Sbjct: 605 LYTKVGYVAEARETYKLLKSLDANAILYASNCMIDLYSDHCMVKEACEVFEGLKVR 660



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 58/131 (44%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N M+  YG + + ++  E+   ME+     D  TY  LI +       +K     + +  
Sbjct: 460 NVMIKAYGLVEKLDEACEIADGMERYGILPDYVTYASLIQLLSTAKLPKKAIYYLEKMKV 519

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            +L  D + ++  ++++++    R    +F EM+ +G  PD     +LI A +    ++Q
Sbjct: 520 VKLLSDCIPYSVVISSFAKIGDLRMAEYLFREMVMSGVRPDVFVYSILIDAYAEVGNVQQ 579

Query: 233 VTTLVRTMHKD 243
            +     M KD
Sbjct: 580 ASAYFGLMKKD 590



 Score = 40.8 bits (94), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 4/163 (2%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           +MK   + P + S   LL  YS  G V K E ++ +M + G   D +  +++  +Y  +G
Sbjct: 345 KMKGENLVPDVVSCRTLLYGYSIRGMVTKAEALLKEMDERGFVVDEYTQSALTRMYVNVG 404

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
               +E+     ++  +  +   ++  I+ +G  G+I   E  F     K++   V    
Sbjct: 405 M---LEQAWRWFDRFHHHMNSECFSANIDAFGEKGYIVLAEKAFIYCIKKKM-LSVSACN 460

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
             + AY   +      EI + M   G  PD  T   LI   S+
Sbjct: 461 VMIKAYGLVEKLDEACEIADGMERYGILPDYVTYASLIQLLST 503



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VFE +K  GI     SH +++  Y K G       +  +M   GL       NS++
Sbjct: 649 EACEVFEGLKVRGIANEF-SHAMMVCMYKKVGRYDVAHRICKEMQALGLLTQLLSYNSVI 707

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +Y   G+ E+  ++   M   + A + +T+  L  I  R G
Sbjct: 708 QMYASGGRMEEALKIFKKMLASNTAPNDATFQALKVILVRSG 749



 Score = 38.9 bits (89), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y ++A   ++ +K L     + +   ++  YS    V +   V   +   G+  + F   
Sbjct: 611 YVAEARETYKLLKSLDANAILYASNCMIDLYSDHCMVKEACEVFEGLKVRGI-ANEFSHA 669

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            M+ +Y ++G+++    +   M+       + +YN +I +Y  GG +E+   +F+ + A 
Sbjct: 670 MMVCMYKKVGRYDVAHRICKEMQALGLLTQLLSYNSVIQMYASGGRMEEALKIFKKMLAS 729

Query: 174 RLKPDVVTWTS 184
              P+  T+ +
Sbjct: 730 NTAPNDATFQA 740


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 25/239 (10%)

Query: 6   CTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEM 65
           CTT D C   R             S   L+NFL+ +  P            +A ++F  +
Sbjct: 4   CTTKDSCRTVR-------------SRTKLMNFLVEKGKPQ-----------EAESIFYSL 39

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
              G  P++ S+  LL A +          +I+Q+ ++G+ PD+   N+++N +   G  
Sbjct: 40  IEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNM 99

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTS 184
           E   E    M++       STYN LI  YG  G  E+   L + +  +  +KP++ T+  
Sbjct: 100 ESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNV 159

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            + A+  KK       +  +MI +G  PD  T   + +A + +  ++Q   ++  M  +
Sbjct: 160 LVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNN 218



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 96/193 (49%), Gaps = 8/193 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++A  V  +M   GI P + ++  + TAY++ G + + EGVI +M  +G++P+      
Sbjct: 170 ITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGI 229

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN----IYGRGGFIEKMEGLFQSL 170
           +++ Y + G+  +       M++     ++  +N LI     I  R G ++++  L +  
Sbjct: 230 IMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDG-VDEVLNLMEEF 288

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
               +KPDV+T+++ + A+S      +C EIF++M+ AG  PD     +L        + 
Sbjct: 289 G---VKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEP 345

Query: 231 EQVTTLVRTMHKD 243
           E+   L+ TM K 
Sbjct: 346 EKAEELLTTMIKS 358



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 17/227 (7%)

Query: 12  CVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVF--IFSIY-----FSDAHAVFEE 64
           C  +R   +WN  Y    S             P++  +  I + Y        A  V  E
Sbjct: 165 CNKKRITEAWNVVYKMIASGIQ----------PDVVTYNTIATAYAQKGALDQAEGVILE 214

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  G+ P  ++  ++++ Y K G + +      +M + G+ P+  + NS++  +  +  
Sbjct: 215 MQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMD 274

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            + ++EVL  ME+     D+ T++ ++N +   GF+EK   +F  +    ++PD   ++ 
Sbjct: 275 RDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSI 334

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               Y R +   +  E+   MI +G  P+      +IS   S  +++
Sbjct: 335 LAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMD 381



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 79/176 (44%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           MK LGI P +     L+  +    +    + V+N M + G+KPD    ++++N +   G 
Sbjct: 250 MKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGF 309

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            EK  E+   M K     D   Y+IL   Y R    EK E L  ++     +P+VV +T+
Sbjct: 310 MEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTT 369

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            ++ +         + +F++M   G  P+  T + LI   +   Q  +   +++ M
Sbjct: 370 VISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEEILQIM 425



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 95/206 (46%), Gaps = 7/206 (3%)

Query: 44  PNLFVF------IFSIYFSDA-HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL +F        +I   D    V   M+  G+ P + +   ++ A+S  G + KC  +
Sbjct: 257 PNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREI 316

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            + M K+G++PD    + +   Y R  + EK EE+LT M K  +  ++  +  +I+ +  
Sbjct: 317 FDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCS 376

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G ++    +F  +  + + P++ T+ + +  ++  +   +  EI + M +    P+  T
Sbjct: 377 AGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEEILQIMTEFEVQPEKST 436

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK 242
             ++  A  +    ++   L+ T ++
Sbjct: 437 MLLVAEAWRATGMTKEANRLLGTRNR 462


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 93/196 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+  G  P + ++ +L+    K G + +    +N M   G +P+    N +L 
Sbjct: 213 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 272

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++   E++L+ M +   +  + T+NILIN   R G + +   + + +P     P
Sbjct: 273 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 332

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +++   L  + ++K   R +E  + M+  GCYPD  T   L++A   + +++    ++
Sbjct: 333 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 392

Query: 238 RTMHKDMKTALPIYFN 253
             +     + + I +N
Sbjct: 393 NQLSSKGCSPVLITYN 408



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 87/201 (43%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L + P L  F        A    + M   G  P + ++  LLTA  K G V     ++NQ
Sbjct: 335 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 394

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +   G  P     N++++   ++G+ E+  ++L  M +     DI TY+ L++   R G 
Sbjct: 395 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 454

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++    F  L    ++P+ +T+ S +    + +   R ++    MI   C P   T  +
Sbjct: 455 VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTI 514

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI   + E   ++   L+  +
Sbjct: 515 LIEGIAYEGLAKEALDLLNEL 535



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 5/187 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D     E M   G  P +     L+  + + G   K   V+  + +SG  PD    N 
Sbjct: 73  LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNV 132

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN-ILINIYGRGGFIEKMEGLFQSLPAK 173
           +++ Y + G+ +   +VL  M   + A D+ TYN IL  +   G   + ME L + L  K
Sbjct: 133 LISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL-QK 188

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDV+T+T  + A  ++    + +++ +EM + G  PD  T  VLI+    E ++++ 
Sbjct: 189 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 248

Query: 234 TTLVRTM 240
              +  M
Sbjct: 249 IKFLNNM 255



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 83/176 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +M R G +P++ +  +L+    + G + +   ++ +M   G  P++   N +L
Sbjct: 282 DAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLL 341

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + +  + ++  E L  M       DI TYN L+    + G ++    +   L +K   
Sbjct: 342 HGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS 401

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           P ++T+ + +   S+     R +++ +EM   G  PD  T   L+S  S E ++++
Sbjct: 402 PVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDE 457



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 14/236 (5%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           +LINFL  Q                A  + E+M   G TP   S+  LL  + K   + +
Sbjct: 304 ILINFLCRQG-----------LLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 352

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
               ++ M   G  PD    N++L    + G+ +   E+L  +     +  + TYN +I+
Sbjct: 353 AIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVID 412

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              + G  E+   L   +  K LKPD++T++S ++  SR+      ++ F ++   G  P
Sbjct: 413 GLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRP 472

Query: 213 DGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
           +  T   +++  C S      +  L   + K  K     Y  L   +G+A   L +
Sbjct: 473 NAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILI--EGIAYEGLAK 526



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 87/197 (44%), Gaps = 3/197 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V E +++ G  P + ++ +L++ Y K+G +     V+++M+   + PD    N++L 
Sbjct: 111 ATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILR 167

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ ++  EVL    +     D+ TY ILI    +   + +   L   +  K  KP
Sbjct: 168 TLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKP 227

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+   +    ++      ++    M   GC P+  T  +++ +  S  +      L+
Sbjct: 228 DVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLL 287

Query: 238 RTMHKDMKTALPIYFNL 254
             M +   +   + FN+
Sbjct: 288 SDMLRKGCSPSVVTFNI 304


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 4/213 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + EM   G+     +           G   K   VI +M   G  PDT   + +LN
Sbjct: 391 AEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLN 450

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 + E    +   M++G   AD+ TY I+++ + + G IE+    F  +      P
Sbjct: 451 YLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTP 510

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVT+T+ + AY + K      E+FE M+  GC P+  T   LI       Q+E+   + 
Sbjct: 511 NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF 570

Query: 238 RTM--HKDMKTALPIYFNLYGEKGVARSNLGQY 268
             M   KD+   + +YF  Y +    R N+  Y
Sbjct: 571 ERMCGSKDVPD-VDMYFKQYDDNS-ERPNVVTY 601



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 85/186 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + + M   G  P    +  L+    K G + + + V  +M + G     +  +S++
Sbjct: 616 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 675

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y ++ + +   +VL+ M + S A ++  Y  +I+   + G  ++   L Q +  K  +
Sbjct: 676 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 735

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VVT+T+ +  +        CLE+ E M   G  P+  T +VLI  C     ++    L
Sbjct: 736 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 795

Query: 237 VRTMHK 242
           +  M +
Sbjct: 796 LEEMKQ 801



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 4/176 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS A      +K     P+  ++  L+ A+ K   +     +  +M  + L+ D F +  
Sbjct: 175 FSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRC 234

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
                 ++G   K  E LT +E  ++  D   Y  LI+        E+       + A  
Sbjct: 235 FAYSLCKVG---KWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATS 291

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQ 229
             P+VVT+++ L     KK   RC  +   M+  GCYP       L+ A C+S D 
Sbjct: 292 CLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDH 347



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 69/159 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A +V  EM   G  P   ++  +L        +     +  +M + GL  D +    
Sbjct: 423 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 482

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ + + G  E+  +    M +     ++ TY  LI+ Y +   +     LF+++ ++ 
Sbjct: 483 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 542

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             P++VT+++ +  + +     +  +IFE M  +   PD
Sbjct: 543 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 581



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 7/179 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A      M+     P + ++  LL        + +C+ V+N M   G  P   + NS
Sbjct: 277 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 336

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-NIYGRGGFIE-KMEGLFQSLPA 172
           +++ Y   G      ++L  M K  +      YNILI +I G    +   +  L +   +
Sbjct: 337 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYS 396

Query: 173 KRLKPDVVTWTSRLAAYSR----KKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSS 226
           + L   VV     +++++R       Y +   +  EMI  G  PD  T +KVL   C++
Sbjct: 397 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA 455


>gi|224073298|ref|XP_002304067.1| predicted protein [Populus trichocarpa]
 gi|222841499|gb|EEE79046.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 98/199 (49%), Gaps = 3/199 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A + F +MK  G +P +  +  LL AY+  GN  K E ++  M  SGL P+  ++ + L
Sbjct: 44  EAQSYFNQMKDEGHSPNIYHYSSLLNAYASGGNYKKAEELVQDMKSSGLVPNKVMLTTQL 103

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +Y R   FEK  ++L  ++   +A D   Y +L++   + G I++   +F  +  K +K
Sbjct: 104 KVYVRGRLFEKSRDLLVELDTLGFAKDEMPYCLLMDGLAKTGCIDEARSVFNEMKEKCVK 163

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P   +++  ++++ R  L+    E+ EE        D   +  ++ A     ++E V   
Sbjct: 164 PGGYSYSIMISSFCRGGLFEEAKELAEEFEAKYDKYDVAISNAILCAYCRAGEMESV--- 220

Query: 237 VRTMHKDMKTALPIYFNLY 255
           +RTM K  + A+   +N +
Sbjct: 221 MRTMRKMDELAISPDYNTF 239



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 77/170 (45%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           T  L V++    F  +  +  E+  LG       + LL+   +KTG + +   V N+M +
Sbjct: 100 TTQLKVYVRGRLFEKSRDLLVELDTLGFAKDEMPYCLLMDGLAKTGCIDEARSVFNEMKE 159

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
             +KP  +  + M++ + R G FE+ +E+    E      D++  N ++  Y R G +E 
Sbjct: 160 KCVKPGGYSYSIMISSFCRGGLFEEAKELAEEFEAKYDKYDVAISNAILCAYCRAGEMES 219

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +    + +    + PD  T+   +  + ++KLY    +  E+M   G  P
Sbjct: 220 VMRTMRKMDELAISPDYNTFHILIKYFCKEKLYMLAYQTMEDMHRKGHQP 269



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 73/150 (48%)

Query: 91  AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150
           +K   ++ +++ +GL+ D+ +  ++L +     + E+ +     M+   ++ +I  Y+ L
Sbjct: 8   SKALDLVQELNYNGLQMDSVMYGTLLAVCASNNRCEEAQSYFNQMKDEGHSPNIYHYSSL 67

Query: 151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
           +N Y  GG  +K E L Q + +  L P+ V  T++L  Y R +L+ +  ++  E+   G 
Sbjct: 68  LNAYASGGNYKKAEELVQDMKSSGLVPNKVMLTTQLKVYVRGRLFEKSRDLLVELDTLGF 127

Query: 211 YPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             D     +L+   +    I++  ++   M
Sbjct: 128 AKDEMPYCLLMDGLAKTGCIDEARSVFNEM 157



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 67/169 (39%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A  + +E+   G+      +  LL   +      + +   NQM   G  P+ +  +S
Sbjct: 7   YSKALDLVQELNYNGLQMDSVMYGTLLAVCASNNRCEEAQSYFNQMKDEGHSPNIYHYSS 66

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN Y   G ++K EE++  M+      +       + +Y RG   EK   L   L    
Sbjct: 67  LLNAYASGGNYKKAEELVQDMKSSGLVPNKVMLTTQLKVYVRGRLFEKSRDLLVELDTLG 126

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              D + +   +   ++         +F EM +    P G +  ++IS+
Sbjct: 127 FAKDEMPYCLLMDGLAKTGCIDEARSVFNEMKEKCVKPGGYSYSIMISS 175


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      +EE+   G   ++    +L+  + K G++   + V + + K GL+P     N
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + +AM       D+ TY++LIN   +   ++    LF  +  K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEK 241

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + +       +EI+++M+     PD  T   LI     +  ++Q 
Sbjct: 242 GLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQA 301

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 302 HDLIDEM 308



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 89/174 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +VF+ + + G+ P++ S+  L+  Y + G++ +   + + MH SG+ PD +  + ++N
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLIN 220

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + +   ++   M +     +  T+  LI+ + + G+++    +++ + ++ L P
Sbjct: 221 GLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLP 280

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           D+VT+ + +    +K   ++  ++ +EM   G  PD  T   LI  C  E  ++
Sbjct: 281 DLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLD 334



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 87/199 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA+ +F+EM   G+ P   +   L+  + K G V     +  QM    L PD    N++
Sbjct: 229 DDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNAL 288

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G  ++  +++  M       D  TY  LI+   + G ++      + +  + +
Sbjct: 289 IYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENI 348

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D V +T+ ++   ++       ++  EM+  G  PD  T  ++I+    +  + + + 
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSK 408

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L++ M +D      + +N+
Sbjct: 409 LLKEMQRDGHVPSVVTYNV 427



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 74/176 (42%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G+ P + ++ +L+    K   +     + ++M + GL P++    ++++ + + G 
Sbjct: 203 MHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGW 262

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +   E+   M   S   D+ TYN LI    + G +++   L   +    LKPD +T+T+
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTT 322

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +    ++       E  + MI      D      LIS    E +      ++R M
Sbjct: 323 LIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 378



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 75/166 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M    + P + ++  L+    K G++ +   +I++M   GLKPD     ++++
Sbjct: 266 AMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLID 325

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  +   E    M + +   D   Y  LI+   + G     E + + + +  LKP
Sbjct: 326 GCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP 385

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D  T+T  +  + +K    +  ++ +EM   G  P   T  VL++ 
Sbjct: 386 DTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 426

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 80/151 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G  P + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 39/223 (17%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           E+F++M   G +PD     ++++A     + ++   +   M +
Sbjct: 376 EVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQE 418



 Score = 40.0 bits (92), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 93/196 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+  G  P + ++ +L+    K G + +    +N M   G +P+    N +L 
Sbjct: 270 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 329

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++   E++L+ M +   +  + T+NILIN   R G + +   + + +P     P
Sbjct: 330 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 389

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +++   L  + ++K   R +E  + M+  GCYPD  T   L++A   + +++    ++
Sbjct: 390 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 449

Query: 238 RTMHKDMKTALPIYFN 253
             +     + + I +N
Sbjct: 450 NQLSSKGCSPVLITYN 465



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 87/201 (43%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L + P L  F        A    + M   G  P + ++  LLTA  K G V     ++NQ
Sbjct: 392 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 451

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +   G  P     N++++   ++G+ E+  ++L  M +     DI TY+ L++   R G 
Sbjct: 452 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 511

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++    F  L    ++P+ +T+ S +    + +   R ++    MI   C P   T  +
Sbjct: 512 VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTI 571

Query: 220 LISACSSEDQIEQVTTLVRTM 240
           LI   + E   ++   L+  +
Sbjct: 572 LIEGIAYEGLAKEALDLLNEL 592



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 5/187 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D     E M   G  P +     L+  + + G   K   V+  + +SG  PD    N 
Sbjct: 130 LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNV 189

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN-ILINIYGRGGFIEKMEGLFQSLPAK 173
           +++ Y + G+ +   +VL  M   + A D+ TYN IL  +   G   + ME L + L  K
Sbjct: 190 LISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL-QK 245

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDV+T+T  + A  ++    + +++ +EM + G  PD  T  VLI+    E ++++ 
Sbjct: 246 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 305

Query: 234 TTLVRTM 240
              +  M
Sbjct: 306 IKFLNNM 312



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 86/177 (48%), Gaps = 2/177 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +M R G +P++ +  +L+    + G + +   ++ +M   G  P++   N +L
Sbjct: 339 DAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLL 398

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + + +  + ++  E L  M  +G Y  DI TYN L+    + G ++    +   L +K  
Sbjct: 399 HGFCKEKKMDRAIEYLDIMVSRGCYP-DIVTYNTLLTALCKDGKVDVAVEILNQLSSKGC 457

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            P ++T+ + +   S+     R +++ +EM   G  PD  T   L+S  S E ++++
Sbjct: 458 SPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDE 514



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 14/236 (5%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           +LINFL  Q                A  + E+M   G TP   S+  LL  + K   + +
Sbjct: 361 ILINFLCRQG-----------LLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 409

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
               ++ M   G  PD    N++L    + G+ +   E+L  +     +  + TYN +I+
Sbjct: 410 AIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVID 469

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              + G  E+   L   +  K LKPD++T++S ++  SR+      ++ F ++   G  P
Sbjct: 470 GLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRP 529

Query: 213 DGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
           +  T   +++  C S      +  L   + K  K     Y  L   +G+A   L +
Sbjct: 530 NAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILI--EGIAYEGLAK 583



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 87/197 (44%), Gaps = 3/197 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V E +++ G  P + ++ +L++ Y K+G +     V+++M+   + PD    N++L 
Sbjct: 168 ATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILR 224

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ ++  EVL    +     D+ TY ILI    +   + +   L   +  K  KP
Sbjct: 225 TLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKP 284

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+   +    ++      ++    M   GC P+  T  +++ +  S  +      L+
Sbjct: 285 DVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLL 344

Query: 238 RTMHKDMKTALPIYFNL 254
             M +   +   + FN+
Sbjct: 345 SDMLRKGCSPSVVTFNI 361


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 4/213 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + EM   G+     +           G   K   VI +M   G  PDT   + +LN
Sbjct: 432 AEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLN 491

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 + E    +   M++G   AD+ TY I+++ + + G IE+    F  +      P
Sbjct: 492 YLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTP 551

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVT+T+ + AY + K      E+FE M+  GC P+  T   LI       Q+E+   + 
Sbjct: 552 NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF 611

Query: 238 RTM--HKDMKTALPIYFNLYGEKGVARSNLGQY 268
             M   KD+   + +YF  Y +    R N+  Y
Sbjct: 612 ERMCGSKDVPD-VDMYFKQYDDNS-ERPNVVTY 642



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 87/194 (44%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S    +A  + + M   G  P    +  L+    K G + + + V  +M + G    
Sbjct: 649 FCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPAT 708

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            +  +S+++ Y ++ + +   +VL+ M + S A ++  Y  +I+   + G  ++   L Q
Sbjct: 709 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 768

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +  K  +P+VVT+T+ +  +        CLE+ E M   G  P+  T +VLI  C    
Sbjct: 769 MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNG 828

Query: 229 QIEQVTTLVRTMHK 242
            ++    L+  M +
Sbjct: 829 ALDVAHNLLEEMKQ 842



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 4/176 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS A      +K     P+  ++  L+ A+ K   +     +  +M  + L+ D F +  
Sbjct: 216 FSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRC 275

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
                 ++G   K  E LT +E  ++  D   Y  LI+        E+       + A  
Sbjct: 276 FAYSLCKVG---KWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATS 332

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQ 229
             P+VVT+++ L     KK   RC  +   M+  GCYP       L+ A C+S D 
Sbjct: 333 CLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDH 388



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 69/159 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A +V  EM   G  P   ++  +L        +     +  +M + GL  D +    
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ + + G  E+  +    M +     ++ TY  LI+ Y +   +     LF+++ ++ 
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             P++VT+++ +  + +     +  +IFE M  +   PD
Sbjct: 584 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 7/179 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A      M+     P + ++  LL        + +C+ V+N M   G  P   + NS
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-NIYGRGGFIE-KMEGLFQSLPA 172
           +++ Y   G      ++L  M K  +      YNILI +I G    +   +  L +   +
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYS 437

Query: 173 KRLKPDVVTWTSRLAAYSR----KKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSS 226
           + L   VV     +++++R       Y +   +  EMI  G  PD  T +KVL   C++
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA 496


>gi|356532361|ref|XP_003534742.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 646

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 10/220 (4%)

Query: 39  LLQHTPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA 91
           +L   PNL  +   +Y         DA A++EEM   G+TP   ++  LL AY +     
Sbjct: 254 VLGAKPNLVTYNALLYAMGRAKRARDAKAIYEEMINNGLTPNWPTYAALLQAYCRARFNR 313

Query: 92  KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK-GSYAADISTYNIL 150
               V  +M + G   D  + N + ++   +G   +  ++   M+  G+   D  TY  L
Sbjct: 314 DALNVYKEMKEKGKDLDILLYNMLFDMCANVGCEGEAVKIFEDMKSSGTCRPDSFTYASL 373

Query: 151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
           IN+Y   G I +ME +F  +     +P+++  TS +  Y + K     ++IF +++D G 
Sbjct: 374 INMYSSIGKISEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGI 433

Query: 211 YPDGGTAKVLISACSS--EDQIEQVTTLVRTMHKDMKTAL 248
            PDG     L+ A +   ++++ ++T  V   +  + + L
Sbjct: 434 SPDGRFCDCLLYAMTQVPKEELGKLTGCVEKANPKLGSVL 473



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +F+EM + G+ P + +   ++   S      K       M   G +PD  V +S
Sbjct: 137 FEGAEKLFDEMLQRGVNPNLITFSTMIICASVCSLPHKAVKWFEMMPSFGCEPDDNVCSS 196

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+  Y R G  +    +    +   +  D   ++ LI ++G  G  +    ++  L    
Sbjct: 197 MIYSYARTGNADMALRLYDRAKAEKWHVDTVVFSGLIKMHGMSGNYDGCLNVYNDLKVLG 256

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            KP++VT+ + L A  R K  R    I+EEMI+ G  P+  T   L+ A
Sbjct: 257 AKPNLVTYNALLYAMGRAKRARDAKAIYEEMINNGLTPNWPTYAALLQA 305



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 7/174 (4%)

Query: 43  TPNLFVFIFSIYFSDAHAV-------FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
            PNL  F   I  +   ++       FE M   G  P       ++ +Y++TGN      
Sbjct: 153 NPNLITFSTMIICASVCSLPHKAVKWFEMMPSFGCEPDDNVCSSMIYSYARTGNADMALR 212

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + ++        DT V + ++ ++G  G ++    V   ++      ++ TYN L+   G
Sbjct: 213 LYDRAKAEKWHVDTVVFSGLIKMHGMSGNYDGCLNVYNDLKVLGAKPNLVTYNALLYAMG 272

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           R       + +++ +    L P+  T+ + L AY R +  R  L +++EM + G
Sbjct: 273 RAKRARDAKAIYEEMINNGLTPNWPTYAALLQAYCRARFNRDALNVYKEMKEKG 326



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            F++NSM+N Y  L   E  ++      K  +A  +  YN+ + ++      E  E LF 
Sbjct: 92  VFILNSMVNPYTALLAVEYFKQ------KIKHARHVILYNVTLKLFREVKDFEGAEKLFD 145

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +  + + P+++T+++ +   S   L  + ++ FE M   GC PD        + CSS  
Sbjct: 146 EMLQRGVNPNLITFSTMIICASVCSLPHKAVKWFEMMPSFGCEPDD-------NVCSS-- 196

Query: 229 QIEQVTTLVRTMHKDMKTALPIYFNLYGEK 258
               + +  RT + DM  AL +Y     EK
Sbjct: 197 ---MIYSYARTGNADM--ALRLYDRAKAEK 221


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 1/210 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  +     AH +FE M   G  P   ++  LL    K     +   +  +M + G  PD
Sbjct: 237 FSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPD 296

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
                ++L  +  +G+ E+  EV   M    +  D+  YN L+  + R G   +   LFQ
Sbjct: 297 KVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQ 356

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-IDAGCYPDGGTAKVLISACSSE 227
            + ++  KPD V+    +   S+ K     +E+FE M  D GC PD  T   LI     E
Sbjct: 357 VMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGE 416

Query: 228 DQIEQVTTLVRTMHKDMKTALPIYFNLYGE 257
            ++ +   + + + +   +  P  FN+  E
Sbjct: 417 QRLSEAMKVFKEIDRLKLSPDPHAFNVLLE 446



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A A+F  M     + P + S+ +L+  + K   + + E +  QM      P+    N+ L
Sbjct: 140 AFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFL 199

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   R G+    + V   M     + D+ TY+ LI+ +      ++   LF+++ ++  +
Sbjct: 200 NGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCR 259

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT+   L    ++       E+F +M++ GC PD  T   L+    +  +IEQ   +
Sbjct: 260 PNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEV 319

Query: 237 VRTM 240
              M
Sbjct: 320 FDEM 323



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 74/156 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M  L   P + ++   L    + G +A  +GV  +M  +G  PD    +++++
Sbjct: 176 AEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIH 235

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +    + ++  E+  AM       +  TYN L++   +    ++   LF+ +  +   P
Sbjct: 236 GFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDP 295

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D VT+T+ L  +       + +E+F+EM+  G  PD
Sbjct: 296 DKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 331



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 1/169 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +AH +F +M   G  P   ++  LL  +   G + +   V ++M   G  PD    N +
Sbjct: 279 DEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCL 338

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR- 174
           L  + R G+  +  ++   M       D  ++NI+I+   +   ++    +F+ +     
Sbjct: 339 LKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHG 398

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             PD+VT+ S +     ++     +++F+E+      PD     VL+ A
Sbjct: 399 CSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 447



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--GSYAAD 143
           K G V     ++  M K G  PD    + ++N   +  + ++ +E L  M +   + A+ 
Sbjct: 61  KAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASS 120

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
             +YN L+N   +   + +   +F ++ ++R + PDVV+++  +  + +     R  +++
Sbjct: 121 CFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLY 180

Query: 203 EEMIDAGCYPDGGT 216
           ++MID  C P+  T
Sbjct: 181 KQMIDLNCVPNVTT 194



 Score = 44.7 bits (104), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 3/141 (2%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + +T  L+ F        A  VF+EM   G  P + ++  LL  + + G   +   +   
Sbjct: 298 VTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQV 357

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILI-NIYGRG 157
           M     KPDT   N M++   +  + +   EV   ME+    + D+ TYN LI  + G  
Sbjct: 358 MVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQ 417

Query: 158 GFIEKMEGLFQSLPAKRLKPD 178
              E M+ +F+ +   +L PD
Sbjct: 418 RLSEAMK-VFKEIDRLKLSPD 437


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 99/217 (45%), Gaps = 7/217 (3%)

Query: 44  PNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P++F +       + S    DA  + E M   G +P + ++  LL    K G + +   +
Sbjct: 218 PDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATAL 277

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M +SG  P+    N++++ + +LG+ ++   +L  M  G    ++ TY +L++ + +
Sbjct: 278 LQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCK 337

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G  E   GL + +  K   P++ T+ S L  + +K    R  ++   MI  GC P+  +
Sbjct: 338 CGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVS 397

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
              +I+      ++ +   L+  M  +      + FN
Sbjct: 398 YNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 434



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 82/169 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A A+ + M R G +P + ++  ++  + K G + +   ++ +M   G +P+      
Sbjct: 271 LDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTV 330

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ + + G+ E    ++  M +  Y  ++ TYN L++++ +   +E+   L  S+  K 
Sbjct: 331 LLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKG 390

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             P+VV++ + +A   +       + + E+M+   C PD  T   +I A
Sbjct: 391 CVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 439



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 81/165 (49%), Gaps = 2/165 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F +M   G+ P   ++ +++++  K   + +   V+  M K+G  P      ++++
Sbjct: 520 AYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLID 579

Query: 118 LYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            + + G  +K  E+L  +  KGSY  D+ T++I I+   + G + +   L +++    L 
Sbjct: 580 GFCKTGNLDKALEILQLLLSKGSYP-DVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLV 638

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           PD VT+ + L  +         +++FE M   GC PD  T   L+
Sbjct: 639 PDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 11/217 (5%)

Query: 37  FLLLQH---TPNLFVFIFSIY-------FSDAHAVFEEMKR-LGITPTMKSHMLLLTAYS 85
           F L+Q    TPNL  +   ++       F  A  +  EM R  G +P + ++  ++    
Sbjct: 453 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 512

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K+  V +   +  QM   GL PD    + +++   +    ++   VL  M K  +     
Sbjct: 513 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAI 572

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TY  LI+ + + G ++K   + Q L +K   PDVVT++  +   S++   R+  E+ E M
Sbjct: 573 TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 632

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           + AG  PD  T   L+       + E    L   M +
Sbjct: 633 LRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQ 669



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 55  FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
              A  +F+EM+  G   P + ++  ++ +  K+G V     ++  M   G  P+    +
Sbjct: 200 LDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYS 259

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+L+   + G+ ++   +L  M +   + +I TYN +I+ + + G I++   L + +   
Sbjct: 260 SLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDG 319

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +P+VVT+T  L A+ +       + + E M++ G  P+  T   L+     +D++E+ 
Sbjct: 320 GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERA 379

Query: 234 TTLVRTM 240
             L+ +M
Sbjct: 380 CQLLSSM 386



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 1/157 (0%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A+ V E M + G  P   ++  L+  + KTGN+ K   ++  +   G  PD    +
Sbjct: 551 FMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFS 610

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
             ++   + G+  +  E+L  M +     D  TYN L+  +      E    LF+ +   
Sbjct: 611 IFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQC 670

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCL-EIFEEMIDAG 209
             +PD  T+T+ +     KK Y+  L E+ + M+D G
Sbjct: 671 GCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTG 707



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 95/207 (45%), Gaps = 8/207 (3%)

Query: 44  PNLFVFIFSIY-FSDAHAV------FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+F +   ++ F  A+ V       E+M   G  P + S+  ++    K   V +   V
Sbjct: 77  PNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRV 136

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           +++M + G +P+     ++++ + R+G  +   E++  M +  Y  +  TYN +++    
Sbjct: 137 MDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCS 196

Query: 157 GGFIEKMEGLFQSL-PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           G  ++    LF+ +  +    PDV T+++ + +  +         + E M+  GC P+  
Sbjct: 197 GRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVV 256

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
           T   L+       ++++ T L++ M +
Sbjct: 257 TYSSLLHGLCKAGKLDEATALLQRMTR 283



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 1/176 (0%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M R G+      H  +L      G  +       +M K+   PD+   N+M+N   +  +
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDR 59

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            +    +L  M    +A ++ +YN +++ + +   +E    L + +  +   PDVV++T+
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +    +         + ++MI  GC P+  T   L+        ++    LVR M
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM 175



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/210 (18%), Positives = 94/210 (44%), Gaps = 8/210 (3%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           + PNLF +  +  ++        A  +   M + G  P + S+  ++    K   V +  
Sbjct: 356 YVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGV 415

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ QM  +   PD    N++++   +  + +   E+   +++     ++ TYN L++  
Sbjct: 416 LLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 475

Query: 155 GRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +    ++ E L + +  K+   PD++T+ + +    + K   R  ++F +M+  G  PD
Sbjct: 476 CKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPD 535

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             T  ++IS+      +++   ++  M K+
Sbjct: 536 DVTYSIVISSLCKWRFMDEANNVLELMLKN 565


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 7/218 (3%)

Query: 44  PNLFVFI--FSIYF-SD----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN  ++I     YF SD      + F+ M   G+    + + +L+   S +GN+     V
Sbjct: 465 PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 524

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++++ K+G  PD  V +S+++   +    EK   +L  M K     +I  YN LI+   +
Sbjct: 525 LSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCK 584

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G I     +F S+ AK L P+ VT+TS +    +         ++ EM+  G  PD   
Sbjct: 585 SGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFV 644

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
             VL + CSS   +EQ   L+  M      ++  + NL
Sbjct: 645 YSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNL 682



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 87/184 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  EM+  GI+P + ++ +++    ++G   K   ++ +M   GLKP+ FV   ++
Sbjct: 310 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 369

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G      E+   M K +   D+  YN LI    + G +E+    F  +  + L 
Sbjct: 370 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 429

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T++  +  Y +        ++ + M+D G  P+      L+ +    D IE+V++ 
Sbjct: 430 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 489

Query: 237 VRTM 240
            ++M
Sbjct: 490 FKSM 493



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 7/208 (3%)

Query: 43  TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN++ +   I+          A  + EEM   G+ P    +  L++ Y + GNV+    
Sbjct: 324 SPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACE 383

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + ++M K  + PD +  NS++    ++G+ E+  +    M++     +  TY+ LI+ Y 
Sbjct: 384 IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYL 443

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +E  E L Q +    LKP+ V +   L +Y +     +    F+ M+D G   D  
Sbjct: 444 KNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNR 503

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKD 243
              +LI   SS   +E    ++  + K+
Sbjct: 504 IYGILIHNLSSSGNMEAAFRVLSEIEKN 531



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 2/201 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  + +EM   G+ P   ++  L+    K G + +   ++ QM +   +PDT   N +
Sbjct: 239 DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 298

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  + R    +    +L+ ME    + ++ TY+I+I+   + G  EK   L + +  K L
Sbjct: 299 IEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 358

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP+   +   ++ Y R+       EIF++M      PD      LI   S   ++E+ T 
Sbjct: 359 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 418

Query: 236 LVRTMHKDMKTALPIYFNLYG 256
               M +  +  LP  F   G
Sbjct: 419 YFAQMQE--RGLLPNEFTYSG 437



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 35/236 (14%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V   M+  G+ P+++    LL    +   +A    V   M  +G+ PD +  ++++
Sbjct: 65  DAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLI 124

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG----------- 165
             Y ++ +F+  ++VL  M +     +  TYN+LI    R G +E+  G           
Sbjct: 125 EAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLV 184

Query: 166 ------------------------LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
                                   L   +    LKP+VV + + +  + R+       ++
Sbjct: 185 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 244

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGE 257
            +EM+ AG  P+  T   L+       Q+++ + L++ M +D      I +NL  E
Sbjct: 245 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 300



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 1/168 (0%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M+  G+ P   ++  L+  Y K G++   E ++ +M  +GLKP+  +   +L  Y +
Sbjct: 420 FAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFK 479

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
               EK+     +M       D   Y ILI+     G +E    +   +      PDV  
Sbjct: 480 SDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHV 539

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
           ++S ++   +     +   I +EM   G  P+      LI   C S D
Sbjct: 540 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGD 587



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/184 (17%), Positives = 84/184 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    ++M+  G+ P   ++  L+    K+    + + ++++M  + LKP+  V  +++
Sbjct: 170 EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLI 229

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R G  ++  +++  M       +  TY+ L+    + G +++   L + +     +
Sbjct: 230 DGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHR 289

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD +T+   +  + R    +    +  EM +AG  P+  T  ++I       + E+ + L
Sbjct: 290 PDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 349

Query: 237 VRTM 240
           +  M
Sbjct: 350 LEEM 353



 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 1/151 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  VF  +   G+ P   ++  L+    K G+++    + N+M  +G+ PD FV + 
Sbjct: 588 ISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSV 647

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +       G  E+   ++  M    +A+ IS++N L++ + + G +++   L   +  + 
Sbjct: 648 LTTGCSSAGDLEQAMFLIEEMFLRGHAS-ISSFNNLVDGFCKRGKMQETLKLLHVIMGRG 706

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           L P+ +T  + ++  S          IF E+
Sbjct: 707 LVPNALTIENIISGLSEAGKLSEVHTIFVEL 737


>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
 gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 426

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EMK  G+TP   S+  LLT Y +     +   +  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVENKKFLEALSIFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ PDT   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   +   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + PD  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L IF EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 85/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A ++F EM+ +     + +  +++  Y + G   + + +   M K G++P+    N+
Sbjct: 130 FLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   L Q +  + 
Sbjct: 190 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG 249

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 250 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 39/223 (17%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           E+F++M   G +PD     ++++A     + ++   +   M +
Sbjct: 376 EVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQE 418



 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M+ +G +PT+ S+  L+  Y   G +     +   M K+G++PD    N+++N
Sbjct: 333 AIEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLIN 392

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G+  +  ++ + M+      +  TYN LIN Y + G  E    L   +    +K 
Sbjct: 393 GFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKA 452

Query: 178 DVVTWT-----------SRLAAYSRKKLYR------------------------RCLEIF 202
           D++T+            ++ AAY  K+L R                        R  +++
Sbjct: 453 DILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLY 512

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + MI +GC+P+  T K+LIS     +  +    +VR M
Sbjct: 513 KSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREM 550



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 84/186 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + EM+R  I+P + +  +++ A+ K G + K   V  +M   G  P     N+++ 
Sbjct: 298 ALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIA 357

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G      ++   MEK     D  T+N LIN + RGG + +   +F  + A  + P
Sbjct: 358 GYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVP 417

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +T+ + +  YS+         + +EM+  G   D  T   LI     E + ++   LV
Sbjct: 418 NTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLV 477

Query: 238 RTMHKD 243
           + + ++
Sbjct: 478 KELDRE 483


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 1/186 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     + E+M+ +G+ P + S+  L+    K G + + E V+  M   G+ P+  V N 
Sbjct: 472 FDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNM 531

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++    +G+ +        M +   +  + TYN+LI+   + G + + E     + +  
Sbjct: 532 LIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSG 591

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV+T+ S ++ Y+      +CL ++E M + G  P   T   LIS CS E  IE V 
Sbjct: 592 HSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVE 650

Query: 235 TLVRTM 240
            L   M
Sbjct: 651 KLYNEM 656



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 8/207 (3%)

Query: 42  HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H+P++  +  + S Y      S    ++E MK LGI PT++++  L++  SK G +   E
Sbjct: 592 HSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVE 650

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            + N+M +  L PD  V N+M++ Y  +G  +K   +   M       D  TYN LI  +
Sbjct: 651 KLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGH 710

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            R G +  ++ L  ++ AK L P   T+   +  +   K +      + EM++    P+ 
Sbjct: 711 FREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNA 770

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMH 241
                L +    E ++++V  +   M+
Sbjct: 771 SICNELTAGLEQEGRLQEVQVICSEMN 797



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 85/183 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++E+    GI     +  +LL    K G V K E ++ +  ++GL  D  + N+ +N
Sbjct: 335 AMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVN 394

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R+G   K    +  ME      +  T+N LI+ +     ++K E   + +  K + P
Sbjct: 395 GYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTP 454

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V T+ + +  Y +   + RC +I E+M + G  P+  +   LI+    + +I +   ++
Sbjct: 455 SVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVL 514

Query: 238 RTM 240
           R M
Sbjct: 515 RDM 517



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 7/185 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A    E M+  G+ P   +   L+  +     + K E  + +M + G+ P     N++++
Sbjct: 405 AILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLID 464

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG+L  F++  ++L  ME+     ++ +Y  LIN   + G I + E + + +  + + P
Sbjct: 465 GYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLP 524

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-------CSSEDQI 230
           +   +   +         +  L  F+EM+ +   P   T  VLI           +ED +
Sbjct: 525 NAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFL 584

Query: 231 EQVTT 235
            Q+T+
Sbjct: 585 TQITS 589



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 74/169 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     +F E++  G       +   + A  K  N+      ++ M K G++P+ F+ N 
Sbjct: 157 FVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNV 216

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    R  +    E++   M   +    I TYN LI+ Y + G ++    + + +  K 
Sbjct: 217 LIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKS 276

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + P+++T+ S L+   + +  +    + +EM   G  PDG T  +L   
Sbjct: 277 VAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDG 325



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/239 (19%), Positives = 90/239 (37%), Gaps = 42/239 (17%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+F++   I          DA  +F+EM  + +  ++ ++  L+  Y K G +     +
Sbjct: 209 PNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKM 268

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL------ 150
             +M +  + P+    NS+L+   ++ + ++   +L  ME   +  D  TY+IL      
Sbjct: 269 RERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLR 328

Query: 151 --------------------INIYG---------RGGFIEKMEGLFQSLPAKRLKPDVVT 181
                               IN Y          + G +EK E + +      L  D V 
Sbjct: 329 CDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVI 388

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + + +  Y R     + +   E M   G  P+  T   LI       ++++    V+ M
Sbjct: 389 YNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKM 447



 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 81/196 (41%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V   S    +A  ++E M+R G  P++ S  LL +         K   +  ++  SG 
Sbjct: 113 LSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGF 172

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           + DTF+    +    +L   +   E L +M K     ++  YN+LI    R   I   E 
Sbjct: 173 RTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEK 232

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +F  +    L   +VT+ + +  Y +        ++ E M +    P+  T   L+S   
Sbjct: 233 MFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLC 292

Query: 226 SEDQIEQVTTLVRTMH 241
              ++++  +L++ M 
Sbjct: 293 KMRKMKEARSLLKEME 308


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 99/210 (47%), Gaps = 2/210 (0%)

Query: 36  NFLLLQHTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           + LL  HT N+ +  +  +    +A     EMK  G  P + S+  ++ AY +  +  K 
Sbjct: 252 SILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKV 311

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             V+N+M + G  P+      +++  G+  +  K  EV   M+  S   D S Y+ LI I
Sbjct: 312 NSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYI 371

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             + G ++    +F+ +  +   PDV+T+ + ++A          L++  +M ++ C PD
Sbjct: 372 LSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPD 431

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             T   L+  C   ++++ ++ L+  M K+
Sbjct: 432 LNTYSPLLKMCCRNNRMKVLSALLNHMFKN 461



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 5/196 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVIN 113
           + DA   F  M+R G+     +   L+ A  K  +V     V  +   S L  P TF  N
Sbjct: 204 WKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFKDSILLNPHTF--N 261

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ + +  + +   + +  M++  +  D+ +Y  ++  Y R     K+  +   +  K
Sbjct: 262 VLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEK 321

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              P+VVT+T  + A  + K   + LE++E+M  + C PD      LI   S   +++  
Sbjct: 322 GCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDA 381

Query: 234 TTLVRTMHKDMKTALP 249
             +   M K  + A+P
Sbjct: 382 RDVFEDMTK--QGAIP 395



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 9/181 (4%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  +   ++        S A  V+E+MK     P    +  L+   SK G +     V
Sbjct: 325 PNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDV 384

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M K G  PD    N+M++      Q E   ++L  ME+ S   D++TY+ L+ +  R
Sbjct: 385 FEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCR 444

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK-KLYRRCLEIFEEMIDAGCYPDGG 215
              ++ +  L   +    +  +V T++  +    +  KL   CL  FEEM+  G  P   
Sbjct: 445 NNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACL-FFEEMVSKGLVPKDC 503

Query: 216 T 216
           T
Sbjct: 504 T 504


>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 426

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 80/151 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR   TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERSGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 98/207 (47%), Gaps = 7/207 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242
             + +I A      +     L+  + +
Sbjct: 291 LYQTMIVAYERSGLVAHAKRLLHELKR 317



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERSGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            D+  +   +  +S+ K Y   +E+F++M   G +PD     ++++A
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVLNA 399


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 87/197 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V E +   G+ PT   +  L+  Y +  ++     +  QM    ++PD    N+++N
Sbjct: 354 AEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALIN 413

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++    + E+++  MEK      + T+N LI+ YGR G +EK   +   +  K +K 
Sbjct: 414 GLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKS 473

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+++ S + A+ +       + I ++MI     P+      +I A       EQ   LV
Sbjct: 474 NVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLV 533

Query: 238 RTMHKDMKTALPIYFNL 254
             M     +A    +NL
Sbjct: 534 EKMKSSGVSASIFTYNL 550



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 36/233 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-------- 106
            ++A  +  EM++ G+ P++++   L+ AY + G + KC  V++ M   G+K        
Sbjct: 421 ITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGS 480

Query: 107 ---------------------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
                                      P+  V NS+++ Y   G  E+   ++  M+   
Sbjct: 481 VVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSG 540

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            +A I TYN+L+    +   I++ E L  +L  + L+PDVV++ + ++A   K    R L
Sbjct: 541 VSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRAL 600

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIY 251
           E+ +EM      P   T   L+SA  S  ++  +  L + M HK+++ +  IY
Sbjct: 601 ELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIY 653



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 100/240 (41%), Gaps = 36/240 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++FE+MK   I P   ++  L+    K   + + E ++ +M KSG+ P     N++++
Sbjct: 389 AFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLID 448

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR GQ EK   VL+ M+     +++ ++  ++  + + G I +   +   +  K + P
Sbjct: 449 AYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVP 508

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM-------------------------------- 205
           +   + S + AY       +   + E+M                                
Sbjct: 509 NAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELI 568

Query: 206 ---IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIYFNLYGEKGVA 261
               + G  PD  +   +ISAC ++   ++   L++ MHK D++  L  Y  L    G A
Sbjct: 569 YNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSA 628



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 4/204 (1%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++F E  + G+     +  +LL    K G VAK E V+  +  +GL P T + N+++N Y
Sbjct: 321 SLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGY 380

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            ++   +    +   M+      D  TYN LIN   +   I + E L   +    + P V
Sbjct: 381 CQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSV 440

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVR 238
            T+ + + AY R     +C  +  +M D G   +  +   ++ A C +    E V  L  
Sbjct: 441 ETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDD 500

Query: 239 TMHKDMKTALPIY---FNLYGEKG 259
            +HKD+     +Y    + Y E G
Sbjct: 501 MIHKDVVPNAQVYNSIIDAYIESG 524



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 69/144 (47%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
            +I S     A  + E+MK  G++ ++ ++ LLL    K   + + E +I  +   GL+P
Sbjct: 519 AYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRP 578

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D    N++++     G  ++  E+L  M K      + TY+ L++  G  G +  ME L+
Sbjct: 579 DVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLY 638

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSR 191
           Q +  K ++P    + +R    S+
Sbjct: 639 QHMVHKNVEPSSSIYGTRCENESK 662



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 83/187 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +  A+ +EM    + P   ++ +L    ++TG+      +  +  K G+    +  + 
Sbjct: 281 MDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSI 340

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN   + G+  K E+VL  +         + YN LIN Y +   ++    +F+ + ++ 
Sbjct: 341 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRH 400

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++PD +T+ + +    + ++     ++  EM  +G  P   T   LI A     Q+E+  
Sbjct: 401 IRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCF 460

Query: 235 TLVRTMH 241
           T++  M 
Sbjct: 461 TVLSDMQ 467



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 35/222 (15%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  VF+EM   G+ P   ++  ++  + K G++     + +QM + G KP+    N +
Sbjct: 212 SDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVL 271

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL-------------INIYG------- 155
           L+   R G+ ++   ++  M   S   D  TY+IL             ++++G       
Sbjct: 272 LSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGV 331

Query: 156 ---------------RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
                          + G + K E + + L    L P    + + +  Y + +  +    
Sbjct: 332 IIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFS 391

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           IFE+M      PD  T   LI+     + I +   LV  M K
Sbjct: 392 IFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEK 433



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/221 (18%), Positives = 94/221 (42%), Gaps = 10/221 (4%)

Query: 44  PNLFVFIFSIYFSDAHAVFEE----MKRLGIT-----PTMKSHMLLLTAYSKTGNVAKCE 94
           P+ F +  ++    A    +E    ++R+G +     P   S+ +++    ++G  +   
Sbjct: 156 PDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 215

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            V ++M   G+ P+    N+M++ + + G  E    +   M +     ++ TYN+L++  
Sbjct: 216 KVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGL 275

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            R G +++   L   + +  + PD  T++      +R    R  L +F E +  G     
Sbjct: 276 CRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGA 335

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNL 254
            T  +L++    + ++ +   ++  + H  +     IY  L
Sbjct: 336 YTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTL 376



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 2/171 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P++ S  LLL +    G  A        +  +G +PDTF  N  +      G  ++   +
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 132 LTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           L  M   +G+   D  +YN++I    R G       +F  +  + + P+ +T+ + +  +
Sbjct: 181 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGH 240

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +         + ++M+  G  P+  T  VL+S      ++++   L+  M
Sbjct: 241 VKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEM 291


>gi|449513167|ref|XP_004164250.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g36300-like [Cucumis sativus]
          Length = 433

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 60/262 (22%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D  ++  EMKR G       +  ++  Y   G   K  G+++++ KSG+  D  + NS++
Sbjct: 165 DTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISMDKHIYNSII 224

Query: 117 NLYGR---------LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           + +G+          GQF+  E+ ++A++     A  S + I+ N + + G  E+   + 
Sbjct: 225 DTFGKYGHLSEALEYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVL 284

Query: 168 QSLPA------------------------------------KRLKPDVVTWTSRLAAYSR 191
           Q + A                                    K + PDV+T+T+ + A+ R
Sbjct: 285 QLMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVKGISPDVITYTTLMKAFIR 344

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-KDMKTALPI 250
            K + +  EI++EM  AGC PD            + + ++ VT ++   H  D     P 
Sbjct: 345 AKKFAKVPEIYKEMESAGCTPDR----------KAREMLKSVTAILEQRHFYDDINERPT 394

Query: 251 YFNLYGEKGV----ARSNLGQY 268
           +    G KG+    AR++L ++
Sbjct: 395 FNGSGGTKGIWQFLARNHLMKW 416


>gi|449458393|ref|XP_004146932.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g36300-like [Cucumis sativus]
          Length = 455

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 58/261 (22%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D  ++  EMKR G       +  ++  Y   G   K  G+++++ KSG+  D  + NS++
Sbjct: 165 DTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISMDKHIYNSII 224

Query: 117 NLYGR---------LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           + +G+          GQF+  E+ ++A++     A  S + I+ N + + G  E+   + 
Sbjct: 225 DTFGKYGHLSEALEYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVL 284

Query: 168 QSLPA------------------------------------KRLKPDVVTWTSRLAAYSR 191
           Q + A                                    K + PDV+T+T+ + A+ R
Sbjct: 285 QLMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVKGISPDVITYTTLMKAFIR 344

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY 251
            K + +  EI++EM  AGC PD    ++L S  +  +Q        R  + D+    P +
Sbjct: 345 AKKFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQ--------RHFYDDINER-PTF 395

Query: 252 FNLYGEKGV----ARSNLGQY 268
               G KG+    AR++L ++
Sbjct: 396 NGSGGTKGIWQFLARNHLMKW 416


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 91/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  E++R GI P + ++  L++A S+  N+ +   V N M     +PD +  N+M++
Sbjct: 253 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 312

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR G   +   +   +E   +  D  TYN L+  + R G ++K++ + + +       
Sbjct: 313 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 372

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y ++  +    +++ +M  +G  PD  T  VLI +    + I++   ++
Sbjct: 373 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 432

Query: 238 RTM 240
             M
Sbjct: 433 SEM 435



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 91/177 (51%), Gaps = 7/177 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y       +A  +F++++  G  P   ++  LL A+++ GNV K + +
Sbjct: 302 PDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEI 361

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M K G   D    N+++++YG+ GQ +   ++ + M+    + D  TY +LI+  G+
Sbjct: 362 CEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGK 421

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
              I++   +   +   R+KP + T+++ +  Y++        E F+ M+ +G  PD
Sbjct: 422 ANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPD 478



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 119/277 (42%), Gaps = 29/277 (10%)

Query: 2   KKPQCTTCDLCVA---------QRA--PHSW-NFNYLPYPSHFMLINFLLLQHTPNLFVF 49
           +K Q T  D C           QRA   + W N  +   P+  ML   L +    N    
Sbjct: 122 RKVQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEAL 181

Query: 50  IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
              I F+ A A            T++ +  ++  Y++TG   K + +++ M   G +PD 
Sbjct: 182 AVEI-FARAEA--------ASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDL 232

Query: 110 FVINSMLNLYGRLGQF--EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
              N+++N   + G        E+L  + +     DI TYN LI+   R   +E+   ++
Sbjct: 233 VSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVY 292

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             + A R +PD+ T+ + ++ Y R  + R    +F+++   G  PD  T   L+ A + E
Sbjct: 293 NDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFARE 352

Query: 228 DQIEQVTTLVRTM-----HKDMKTALPIYFNLYGEKG 259
             +++V  +   M      KD  T   I  ++YG++G
Sbjct: 353 GNVDKVKEICEDMVKMGFGKDEMTYNTI-IHMYGKRG 388



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V+ +M      P + ++  +++ Y + G   +   +   +   G  PD    NS
Sbjct: 285 LEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNS 344

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + R G  +K++E+   M K  +  D  TYN +I++YG+ G  +    L+  +    
Sbjct: 345 LLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSG 404

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
             PD VT+T  + +  +  + +   E+  EM++A   P   T   LI
Sbjct: 405 RSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALI 451



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 50/100 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  EM    + PT+++   L+  Y+K G   + E   + M +SG+KPD    + ML
Sbjct: 427 EAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVML 486

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++  R  +  K  ++   M   S+  D + Y +++ + G+
Sbjct: 487 DILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 526



 Score = 44.3 bits (103), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 57/121 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ +MK  G +P   ++ +L+ +  K   + +   V+++M  + +KP     ++++ 
Sbjct: 393 AFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALIC 452

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+  + EE    M +     D   Y+++++I  R     K   L+Q +     KP
Sbjct: 453 GYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKP 512

Query: 178 D 178
           D
Sbjct: 513 D 513



 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 44/96 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +   MK  G+ PT+ +  LL+ +YS +G   + E V++ +   GL   T   +S+
Sbjct: 626 SKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSV 685

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           ++ Y + G      + L  M+K     D   +   +
Sbjct: 686 IDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFV 721


>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 426

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDKAAMLFQKLR 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G ++K   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     +   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ +K   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F++M   G +P+     ++++A
Sbjct: 376 EVFDKMRGLGYFPESNVIALVLNA 399


>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 426

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 83/204 (40%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
            +F++M   G +PD     ++++A
Sbjct: 376 VVFDKMRGLGYFPDSNVIALVLNA 399


>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 426

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F++M   G +PD     ++++A
Sbjct: 376 EVFDKMRGLGYFPDSNVIALVLNA 399



 Score = 40.0 bits (92), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 84/186 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EMK+ G+ P + +    L +  K G   +     + M   G KPD F   +
Sbjct: 351 LKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCT 410

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ Y   G F  M  +  +M+    AA+   + ILI+ Y + G ++    +F  +  + 
Sbjct: 411 LLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDVVT+++ ++ +SR       +E F +M+  G  P+      +I        + +  
Sbjct: 471 VSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAK 530

Query: 235 TLVRTM 240
            LV  M
Sbjct: 531 ELVSEM 536



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 87/185 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F EM R G+ P + ++ L++ A  K   + K E V+ QM   G +PDT   + M++
Sbjct: 284 ACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIH 343

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y  LG+ ++  ++   M+K     +I T N  +    + G  ++    F S+ AK  KP
Sbjct: 344 GYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKP 403

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ ++ + L  Y+ +  +   + +F  M   G   +     +LI A +    ++    + 
Sbjct: 404 DIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIF 463

Query: 238 RTMHK 242
             M +
Sbjct: 464 TEMQQ 468



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 4/184 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M   G  P   ++  ++  Y+  G + +   +  +M K GL P+    NS L 
Sbjct: 319 AELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLA 378

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  E   +M    +  DI +Y  L++ Y   G    M GLF S+ +  +  
Sbjct: 379 SLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAA 438

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQV 233
           +   +T  + AY+++ +    + IF EM   G  PD  T   +IS  S      D +E+ 
Sbjct: 439 NCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKF 498

Query: 234 TTLV 237
             +V
Sbjct: 499 NQMV 502



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 1/153 (0%)

Query: 58  AHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +  EM   GI  P +     ++ +  K G V     + +     G +P     NS++
Sbjct: 529 AKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLI 588

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y  +G+ +K  ++L AME      DI TYN L++ Y + G I     LF+ +  K +K
Sbjct: 589 DGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVK 648

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           P+ VT+   LA   R        + F EMI++G
Sbjct: 649 PNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 4/194 (2%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           +P + ++  ++  +   G   K   + ++M + G+KPD    N +++   +    +K E 
Sbjct: 262 SPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAEL 321

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           VL  M       D  TY+ +I+ Y   G +++   +F+ +  + L P++VT  S LA+  
Sbjct: 322 VLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLC 381

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA--- 247
           +    +   E F+ M   G  PD  +   L+   +SE     +  L  +M  +   A   
Sbjct: 382 KHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCH 441

Query: 248 -LPIYFNLYGEKGV 260
              I  + Y ++G+
Sbjct: 442 VFTILIHAYAKRGM 455



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 108/246 (43%), Gaps = 41/246 (16%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F EM++ G++P + ++  +++ +S+ G +       NQM   G++P+T V +S++
Sbjct: 458 DAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSII 517

Query: 117 NLYGRLGQFEKMEEVLTAM-EKG-----------------------------SYAADIS- 145
             +   G   K +E+++ M  KG                               A DI  
Sbjct: 518 QGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGE 577

Query: 146 -----TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
                T+N LI+ Y   G ++K   +  ++    ++PD+VT+ + L  Y +       L 
Sbjct: 578 RPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLT 637

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYG--EK 258
           +F EM   G  P+  T  ++++      +  +     +  H+ +++   +  ++YG    
Sbjct: 638 LFREMQRKGVKPNTVTYGIMLAGLF---RAGRTVAARKKFHEMIESGTTVTVSIYGIILG 694

Query: 259 GVARSN 264
           G+ R+N
Sbjct: 695 GLCRNN 700



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 8/179 (4%)

Query: 42  HTPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H P++F +   ++       F+D   +F  MK  GI        +L+ AY+K G V    
Sbjct: 401 HKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAM 460

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            +  +M + G+ PD    +++++ + R+G+     E    M       + + Y+ +I  +
Sbjct: 461 LIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGF 520

Query: 155 GRGGFIEKMEGLFQSLPAKRL-KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
              G + K + L   +  K + +PD+V ++S + +  +        +IF+   D G  P
Sbjct: 521 CMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERP 579



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 76/185 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + + M+ +G+ P + ++  LL  Y K G +     +  +M + G+KP+T     ML 
Sbjct: 600 AFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLA 659

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G+     +    M +      +S Y I++    R    ++   LFQ L    +K 
Sbjct: 660 GLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKF 719

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            +    + + A  + +      E+F  +  +G  P+  T  V+I     +  +E    + 
Sbjct: 720 SITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMF 779

Query: 238 RTMHK 242
            +M K
Sbjct: 780 SSMEK 784



 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 2/149 (1%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--GSYAADISTYNILINI 153
           ++++M + G  P+    + +L         ++  ++L  M K  G+ + D+  Y+ +I+ 
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +   G   K   LF  +  + +KPDVVT+   + A  + +   +   +  +M   G  PD
Sbjct: 275 FFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPD 334

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             T   +I   ++  ++++   + R M K
Sbjct: 335 TVTYSCMIHGYATLGRLKEAAKMFREMKK 363


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 87/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F++M  +G  P +  +  ++    K+  V     ++N+M K G+ PD    NS++
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLI 228

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +     G++     +++ M K     D+ T+N LI+   + G + + E  ++ +  + L 
Sbjct: 229 SGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLD 288

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD+VT++  +             E+F  M+  GC+PD  T  +LI+      ++E    L
Sbjct: 289 PDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKL 348

Query: 237 VRTMHK 242
              M +
Sbjct: 349 FCEMSQ 354



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 75/153 (49%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM + G+     ++ +L+  Y + G +   E +  +M   G+ P+    N +L+   
Sbjct: 348 LFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLC 407

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
             G+ EK   +L  M+K    ADI TYNI+I    + G +     ++ SL  + L PD+ 
Sbjct: 408 DNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIW 467

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           T+T+ +    +K L R    +F +M + G  P+
Sbjct: 468 TYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 6/203 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +   M +  I P + +   L+ A  K G V++ E    +M +  L PD    + 
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296

Query: 115 M---LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +   L +Y RL + E+M   + +  KG +  D+ TY+ILIN Y +   +E    LF  + 
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVS--KGCFP-DVVTYSILINGYCKSKKVEHGMKLFCEMS 353

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            + +  + VT+T  +  Y R        EIF  M+  G +P+  T  VL+       +IE
Sbjct: 354 QRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413

Query: 232 QVTTLVRTMHKDMKTALPIYFNL 254
           +   ++  M K+   A  + +N+
Sbjct: 414 KALVILADMQKNGMDADIVTYNI 436



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 75/167 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A +   +M +LG  P++ +   LL  + +   V     + +QM   G KP+  + N+
Sbjct: 132 LSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNT 191

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  Q +   ++L  MEK     D+ TYN LI+     G       +   +  + 
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKRE 251

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + PDV T+ + + A  ++       E +EEMI     PD  T  +LI
Sbjct: 252 IYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 73/180 (40%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++E+M+ LGI   + +  +LL  + +   ++     + +M K G +P      S+LN + 
Sbjct: 103 LWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFC 162

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R  +      +   M    Y  ++  YN +I+   +   ++    L   +    + PDVV
Sbjct: 163 RGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVV 222

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ S ++       +     +   M     YPD  T   LI AC  E ++ +       M
Sbjct: 223 TYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 73/188 (38%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D+  +F  M +    P++     LL+A SK         +  QM   G+  +    N 
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN + R  Q       L  M K  +   I T+  L+N + RG  +     +F  +    
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+VV + + +    + K     L++   M   G  PD  T   LIS   S  +    T
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241

Query: 235 TLVRTMHK 242
            +V  M K
Sbjct: 242 RMVSCMTK 249



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 86/212 (40%), Gaps = 6/212 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A   +EEM R  + P + ++ LL+        + + E +   M   G  PD    + +
Sbjct: 273 SEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSIL 332

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N Y +  + E   ++   M +     +  TY ILI  Y R G +   E +F+ +    +
Sbjct: 333 INGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV 392

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+++T+   L          + L I  +M   G   D  T  ++I       ++     
Sbjct: 393 HPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWD 452

Query: 236 L-----VRTMHKDMKTALPIYFNLYGEKGVAR 262
           +      + +  D+ T   +   LY +KG+ R
Sbjct: 453 IYCSLNCQGLMPDIWTYTTMMLGLY-KKGLRR 483


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 87/185 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+EM    + P   ++  L+    K G ++    ++N+MH  G   D    +S+
Sbjct: 361 DEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSL 420

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   +  Q +K   ++T ++      +I TY IL++   + G ++  + ++Q L  K  
Sbjct: 421 LDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGY 480

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             DV  +   +    ++ L+   L +  +M D GC PD  T + L+ A    D+ ++   
Sbjct: 481 HLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVK 540

Query: 236 LVRTM 240
           L+R M
Sbjct: 541 LLREM 545



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 1/197 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F +M    I P + +  +L+    K G + K   V+  M K G+  +    NS
Sbjct: 255 LKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNS 314

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  + Q  K   V   M +     D+ +Y+I+IN   +   +++   LF+ + +K 
Sbjct: 315 LMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKS 374

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+ VT+ S +    +        ++  EM + G   D  T   L+ A     Q+++  
Sbjct: 375 MAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAI 434

Query: 235 TLVRTMHKDMKTALPIY 251
           TL+ T  KD      IY
Sbjct: 435 TLI-TKIKDQGIQPNIY 450



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  +  EM   G    + ++  LL A  K   V K   +I ++   G++P+ +    +
Sbjct: 396 SDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTIL 455

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+ +  + V   +    Y  D+  YN+++N   + G  ++   L   +     
Sbjct: 456 VDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGC 515

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            PD VT+ + + A        + +++  EMI  G
Sbjct: 516 IPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 86/211 (40%), Gaps = 7/211 (3%)

Query: 39  LLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA 91
           L Q  P+LF F   I       + + A +V  ++ +LG  P   +   L+      G V 
Sbjct: 92  LKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVR 151

Query: 92  KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           +     + +   G   D     +++N   + G+     +VL  ++      ++  YN +I
Sbjct: 152 EALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTII 211

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
           +   +   +     L   +  KR+ PDVVT+T+ +         +  + +F +M+     
Sbjct: 212 DSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIK 271

Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           PD  T  +L+     E ++++   ++  M K
Sbjct: 272 PDVYTFNILVDGLCKEGEMKKARNVLAVMIK 302



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/186 (18%), Positives = 80/186 (43%), Gaps = 4/186 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  ++  L + P +  +  ++ +  K   V     + ++M    + PD     +++ 
Sbjct: 188 ALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLI- 246

Query: 118 LYGRL--GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            YG L  G+ ++   +   M   +   D+ T+NIL++   + G ++K   +   +  + +
Sbjct: 247 -YGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGV 305

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             ++VT+ S +  Y   K   +   +F  M   G  PD  +  ++I+       +++   
Sbjct: 306 DSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVN 365

Query: 236 LVRTMH 241
           L + MH
Sbjct: 366 LFKEMH 371


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 3/213 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + EM   G+     +           G   K   VI +M   G  PDT   + +L 
Sbjct: 432 AEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLG 491

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 + E    +   M++G   AD+ TY I+++ + + G IE+    F  +      P
Sbjct: 492 YLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTP 551

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVT+T+ + AY + K      E+FE M+  GC P+  T   LI       Q+E+   + 
Sbjct: 552 NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIF 611

Query: 238 RTM--HKDMKTALPIYFNLYGEKGVARSNLGQY 268
             M   KD+   + +YF  Y +    R N+  Y
Sbjct: 612 ERMCGSKDVPD-VDMYFKQYDDDNSERPNVVIY 643



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 86/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + + M   G  P    +  L+    K G + + + V  +M + G     +  +S++
Sbjct: 658 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLI 717

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y ++ + +   +VL+ M + S A ++  Y  +I+   + G  ++   L Q +  K  +
Sbjct: 718 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 777

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VVT+T+ +  + R      CLE+ E M   G  P+  T +VLI  C     ++    L
Sbjct: 778 PNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 837

Query: 237 VRTMHK 242
           +  M +
Sbjct: 838 LEEMKQ 843



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 4/176 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS A      +K     P+  ++  L+ A+ K   +     V  +M  + L+ D F +  
Sbjct: 216 FSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRC 275

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
                 ++G   K  E LT ME  ++  D   Y  LI+        E+       + A  
Sbjct: 276 YAYSLCKVG---KWREALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATS 332

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQ 229
             P+VVT+++ L     KK   RC  +   M+  GCYP       L+ A C+S D 
Sbjct: 333 CLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDH 388



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 69/159 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A +V  EM   G  P   ++  +L        +     +  +M + GL  D +    
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ + + G  E+  +    M +     ++ TY  LI+ Y +   +     LF+++ ++ 
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             P++VT+++ +  + +     +  +IFE M  +   PD
Sbjct: 584 CLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPD 622



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 13/182 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A      M+     P + ++  LL        + +C+ V+N M   G  P   + NS
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-NIYGRGG-----FIEKMEGLFQ 168
           +++ Y   G      ++L  M K  +      YNILI +I G         +E  E  + 
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYS 437

Query: 169 SLPAKRL---KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISAC 224
            + A  +   K +V ++T  L +  +   Y +   +  EMI  G  PD  T +KVL   C
Sbjct: 438 EMLATGVVLNKINVSSFTRCLCSAGK---YEKAFSVIREMIGQGFIPDTSTYSKVLGYLC 494

Query: 225 SS 226
           ++
Sbjct: 495 NA 496


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM + G+     ++  L+    + G+    + +  +M   G+ P+    N++L+   
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ EK   V   +++      I TYNI+I    + G +E    LF +L  K +KPDVV
Sbjct: 478 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVV 537

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + ++ + RK        +F+EM + G  P+ G    LI A   +   E    L++ M
Sbjct: 538 AYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597

Query: 241 H 241
            
Sbjct: 598 R 598



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 91/190 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  +F+EM+  GI P + ++  L++     G  +    +++ M +  + PD F  +
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + + G+  + E++   M K S    I TY+ LIN +     +++ + +F+ + +K
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDVV++++ +  + + K     +E+F EM   G   +  T   LI         +  
Sbjct: 391 HCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMA 450

Query: 234 TTLVRTMHKD 243
             + + M  D
Sbjct: 451 QEIFKEMVSD 460



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/185 (17%), Positives = 85/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M++  + P +  +  ++    K  ++     +  +M   G++P+    +S+++
Sbjct: 240 AFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++     +L+ M +     D+ T++ LI+ + + G + + E L+  +  + + P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            +VT++S +  +          ++FE M+   C+PD  +   LI       ++++   L 
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELF 419

Query: 238 RTMHK 242
           R M +
Sbjct: 420 REMSQ 424



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 89/220 (40%), Gaps = 35/220 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A AV  +M +LG  P + +   LL  Y  +  +++   +++QM  +G +P+T   N++++
Sbjct: 135 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 194

Query: 118 ----------------------------LYG-------RLGQFEKMEEVLTAMEKGSYAA 142
                                        YG       + G  +    +L  ME+G    
Sbjct: 195 GLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEP 254

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
            +  Y  +I+   +   ++    LF+ +  K ++P+VVT++S ++       +     + 
Sbjct: 255 GVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLL 314

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +MI+    PD  T   LI A   E ++ +   L   M K
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/185 (17%), Positives = 82/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A A+ + M   G  P + ++ +++    K G+      ++N+M +  L+P   +  ++
Sbjct: 203 SEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTI 262

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +    +    +   ME      ++ TY+ LI+     G       L   +  +++
Sbjct: 263 IDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 322

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+++ + A+ ++       ++++EM+     P   T   LI+     D++++   
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 382

Query: 236 LVRTM 240
           +   M
Sbjct: 383 MFEFM 387



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 75/188 (39%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA A+F EM +    P++     LL+A +K         +  QM   G+  + +  + 
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSI 121

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + R  Q      VL  M K  Y  +I T + L+N Y     I +   L   +    
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +P+ VT+ + +            + + + M+  GC PD  T  V+++        +   
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 235 TLVRTMHK 242
            L+  M +
Sbjct: 242 ILLNKMEQ 249


>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
 gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
 gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 426

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F++M   G +PD     ++++A
Sbjct: 376 EVFDKMRGLGYFPDSNVIALILNA 399



 Score = 40.0 bits (92), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 7/205 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN+FV+   I        F +A  +F+ M ++G+ P   ++ +L+  + + G +     
Sbjct: 364 SPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALS 423

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
            + +M   GLKP  +  NS++N + + G     E ++  M        + TY  L+  Y 
Sbjct: 424 FLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYC 483

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
             G I K   L+  +  K + P + T+T+ L+   R  L R  +++F EM +    P+  
Sbjct: 484 SKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRV 543

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T  V+I     E  + +    +  M
Sbjct: 544 TYNVMIEGYCEEGNMSKAFEFLNEM 568



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 2/187 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +++ M   G  P   ++  ++    K G V + E + ++M      P+      
Sbjct: 698 FKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGC 757

Query: 115 MLNLYGR-LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            L++  + +G  +K  E+  A+ KG   A+ +TYN+LI  + R G +E+   L   +   
Sbjct: 758 FLDILTKGVGDMKKAVELHNAILKG-LLANTATYNMLIRGFCRQGRMEEASELITRMIGD 816

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + PD +T+T+ ++   R+   ++ +E++  M + G  PD      LI  C    ++ + 
Sbjct: 817 GVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKA 876

Query: 234 TTLVRTM 240
           T L   M
Sbjct: 877 TELRNEM 883



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + + +   G++P +  +  L+ +  K  N  + E + ++M K GL P+    + ++
Sbjct: 350 EALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILI 409

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +++ R G+ +     L  M        +  YN LIN + + G I   E L   +  K+L+
Sbjct: 410 DMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLE 469

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           P VVT+TS +  Y  K    + L ++ EM   G  P   T   L+S 
Sbjct: 470 PTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSG 516



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 90/202 (44%), Gaps = 7/202 (3%)

Query: 38  LLLQHTPNLFVFIFSIYFSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           LL+QH      ++ S    D   VF+ M  ++ + P +++   LL    K  +      +
Sbjct: 161 LLIQH------YVRSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMEL 214

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            + M   G++PD ++   ++     L    + +E++  ME      +I  YN+LI+   +
Sbjct: 215 FDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCK 274

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              + +  G+ + L  K LKPDVVT+ + +    + + +   LE+ +EM+     P    
Sbjct: 275 KQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAA 334

Query: 217 AKVLISACSSEDQIEQVTTLVR 238
              L+       ++E+   LV+
Sbjct: 335 VSSLVEGLRKRGKVEEALNLVK 356



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 80/187 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A     EM   GI P   S+  L+     TG  ++ +  ++ +HK   + +      
Sbjct: 558 MSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTG 617

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ + R G+ E+   V   M       D+  Y +LI+   +    +   GL + +  + 
Sbjct: 618 LLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRG 677

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKPD V +TS + A S+   ++    I++ MI+ GC P+  T   +I+       + +  
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 737

Query: 235 TLVRTMH 241
            L   M 
Sbjct: 738 ILCSKMR 744



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 84/190 (44%), Gaps = 2/190 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A +V ++M   G+   +  + +L+    K  +     G++ +MH  GLKPD  +  S
Sbjct: 628 LEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTS 687

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++   + G F++   +   M       +  TY  +IN   + GF+ + E L   +    
Sbjct: 688 MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGN 747

Query: 175 LKPDVVTWTSRLAAYSRK-KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             P+ VT+   L   ++     ++ +E+   ++  G   +  T  +LI     + ++E+ 
Sbjct: 748 SVPNQVTYGCFLDILTKGVGDMKKAVELHNAIL-KGLLANTATYNMLIRGFCRQGRMEEA 806

Query: 234 TTLVRTMHKD 243
           + L+  M  D
Sbjct: 807 SELITRMIGD 816



 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 56/128 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A ++  EM    + PT+ ++  L+  Y   G + K   + ++M   G+ P  +   +
Sbjct: 453 ISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTT 512

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+   R G      ++ T M + +   +  TYN++I  Y   G + K       +  K 
Sbjct: 513 LLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKG 572

Query: 175 LKPDVVTW 182
           + PD  ++
Sbjct: 573 IVPDTYSY 580



 Score = 43.9 bits (102), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 1/162 (0%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +I++M +    P    ++S++    + G+ E+   ++  + +   + +I  YN LI+   
Sbjct: 319 MIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLC 378

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +G   ++ E LF  +    L P+ VT++  +  + R+      L    EMID G  P   
Sbjct: 379 KGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVY 438

Query: 216 TAKVLISA-CSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYG 256
               LI+  C   D     + +   ++K ++  +  Y +L G
Sbjct: 439 PYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMG 480



 Score = 41.2 bits (95), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 1/202 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ EM   GI P++ +   LL+   + G +     +  +M +  +KP+    N M+ 
Sbjct: 491 ALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIE 550

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G   K  E L  M +     D  +Y  LI+     G   + +     L     + 
Sbjct: 551 GYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCEL 610

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + + +T  L  + R+      L + ++M   G   D     VLI         +    L+
Sbjct: 611 NEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLL 670

Query: 238 RTMH-KDMKTALPIYFNLYGEK 258
           + MH + +K    IY ++   K
Sbjct: 671 KEMHDRGLKPDDVIYTSMIDAK 692



 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 54/125 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+     ++ +L+  + + G + +   +I +M   G+ PD     +M++   R    +K 
Sbjct: 782 GLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKA 841

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            E+  +M +     D   YN LI+     G + K   L   +  + LKP+  T  + ++ 
Sbjct: 842 IELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTISN 901

Query: 189 YSRKK 193
            S  K
Sbjct: 902 DSSSK 906


>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 426

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 12/197 (6%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED-------- 228
            D V + + + AY R  L      +  E+      P      +L  A   E+        
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRXEEATWVFRQA 346

Query: 229 ----QIEQVTTLVRTMH 241
               +++ +T   R +H
Sbjct: 347 IDAGEVKDITVFERMIH 363



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRXEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F++M   G +PD     ++++A
Sbjct: 376 EVFDKMRGLGYFPDSNVIALVLNA 399



 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 76/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G  E+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRXEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
 gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 41  QHTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           +++P++F +       + +  +  AH +F+EM+   + P   ++  L+T + K G     
Sbjct: 102 RYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDAS 161

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
              + QM +  +  D  + ++++ L  +L  + K   +   +++     D+  YN +IN+
Sbjct: 162 LFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINV 221

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +G+     + + L + +    + PD V++++ L+ Y   + +   L +F EM +A C  D
Sbjct: 222 FGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLD 281

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             T  V+I      D  ++   L  +M K
Sbjct: 282 LTTCNVMIDVYGQLDMAKEADRLFWSMRK 310



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 98/203 (48%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A  + +EM+ +G+ P   S+  LL+ Y +     +   V  
Sbjct: 212 LVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFA 271

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M+++    D    N M+++YG+L   ++ + +  +M K     ++ +YN L+ +YG   
Sbjct: 272 EMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETE 331

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ + +  Y +   + +   + +EM + G  P+  T  
Sbjct: 332 LFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYS 391

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 392 TIISIWGKAGKLDRAAMLFQKLR 414



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 94/187 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR GI P + ++  ++  + K     + + ++ +M + G+ PDT   ++
Sbjct: 193 YSKAISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYST 252

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L++Y    +F +   V   M +     D++T N++I++YG+    ++ + LF S+    
Sbjct: 253 LLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMG 312

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VV++ + L  Y   +L+   + +F  M       +  T   +I       + E+ T
Sbjct: 313 IEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKAT 372

Query: 235 TLVRTMH 241
            L++ M 
Sbjct: 373 NLMQEMQ 379



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 87/182 (47%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y +T    +   +   M K  ++ +    N+M+
Sbjct: 300 EADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMI 359

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 360 KVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVE 419

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      P     K+L  A     +IE+ T +
Sbjct: 420 IDQVLYQTMIVAYERSGLVAHAKRLLHELKHPDSIPRETAIKILARAG----RIEEATWV 475

Query: 237 VR 238
            R
Sbjct: 476 FR 477



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 86/178 (48%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L V++ +  F +A +VF EM        + +  +++  Y +     + + +   M K G+
Sbjct: 254 LSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGI 313

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+    N++L +YG    F +   +   M+K     ++ TYN +I +YG+    EK   
Sbjct: 314 EPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATN 373

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 374 LMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 431



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           +P++ ++ ++L    +        G+ ++M    L PD +  ++++  +G+ G F+    
Sbjct: 104 SPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLF 163

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
            L  ME+   + D+  Y+ LI +  +     K   +F  L    + PD+V + S +  + 
Sbjct: 164 WLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFG 223

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-----DMK 245
           + KL+R    + +EM + G  PD  +   L+S     ++  +  ++   M++     D+ 
Sbjct: 224 KAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLT 283

Query: 246 TALPIYFNLYGEKGVAR 262
           T   +  ++YG+  +A+
Sbjct: 284 TC-NVMIDVYGQLDMAK 299



 Score = 44.3 bits (103), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 77/178 (43%), Gaps = 12/178 (6%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN   +  I SI+        A  +F++++  G+      +  ++ AY ++G VA  + +
Sbjct: 385 PNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRL 444

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++++      PD+    + + +  R G+ E+   V           DIS +  +++++ R
Sbjct: 445 LHELKH----PDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSR 500

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-YPD 213
                 +  +F+ +      PD       L AY +   + +   +++EM +  C +PD
Sbjct: 501 NRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEMQEEECVFPD 558



 Score = 40.8 bits (94), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++  +S+    A    V  +M  +G  PD+ VI  +LN YG+L +FEK + +   M++  
Sbjct: 494 MVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEMQEEE 553

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
                  +  ++++YG       +E LF+ L +
Sbjct: 554 CVFPDEVHFQMLSLYGARKDFMMIEALFERLDS 586


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 83/182 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+EM + G+ P + +   L+    +TG V+       +  + G+K D     +++N + 
Sbjct: 441 LFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFC 500

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            +  FEK  E+   M K   + D   Y  LI+ + + G +     +   L    ++PD V
Sbjct: 501 NVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTV 560

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            + + +  + R   + R  E+ +EM +AG  PD  T   LI+  S    ++    ++R M
Sbjct: 561 CYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKM 620

Query: 241 HK 242
            K
Sbjct: 621 IK 622



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 92/187 (49%), Gaps = 1/187 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +F EM + G +P    +  L++ +S+ G +A    V+ ++ K G++PDT   N+
Sbjct: 505 FEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNT 564

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R  +F ++ E+L  ME+     D  TYN LI    + G ++  + + + +    
Sbjct: 565 LIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAG 624

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA-KVLISACSSEDQIEQV 233
           + P V T+ + + AY         +EIF++M  A   P       +LI++    ++++  
Sbjct: 625 VVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSA 684

Query: 234 TTLVRTM 240
            +L+  M
Sbjct: 685 VSLMEDM 691



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 9/195 (4%)

Query: 57  DAHAVFEEMK--------RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKP 107
           DA  V E+M          + + P +  +  L+    K G   +  G++ +M  + G  P
Sbjct: 358 DALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAP 417

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           DT   N +++ + + G+ EK +E+   M K   A ++ T N L+    R G +      F
Sbjct: 418 DTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFF 477

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
                + +K D VT+T+ + A+     + + +E+F EM+ +GC PD      LIS  S  
Sbjct: 478 VEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQA 537

Query: 228 DQIEQVTTLVRTMHK 242
            ++   + ++  + K
Sbjct: 538 GRMADASFVLAELKK 552



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 6/193 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A   F E +R G+     ++  L+ A+    N  K   + N+M KSG  PD  V  ++
Sbjct: 471 SSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTL 530

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+      VL  ++K     D   YN LI  + R     ++  + + +    L
Sbjct: 531 ISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGL 590

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVT 234
           KPD +T+ + +A  S+    +   ++  +MI AG  P   T   +I+A C + +  E + 
Sbjct: 591 KPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAM- 649

Query: 235 TLVRTMHKDMKTA 247
                + KDMK A
Sbjct: 650 ----EIFKDMKAA 658



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 4/183 (2%)

Query: 59  HAVFE---EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           H VFE   EM+  G+ P   ++  L+   SK G++   + V+ +M K+G+ P      ++
Sbjct: 576 HRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAV 635

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +N Y   G   +  E+   M+  S    +   YNILIN   +   ++    L + +    
Sbjct: 636 INAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWG 695

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+  T+ +       +K   +  E  + MI+  C PD  T ++L    S+  +IE++ 
Sbjct: 696 VTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLK 755

Query: 235 TLV 237
             V
Sbjct: 756 KFV 758



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 10/195 (5%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM +LG      +   LLT  ++ GN  +   ++ +M +  ++P+      ++N   
Sbjct: 292 LFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMC 351

Query: 121 RLGQFEKMEEVLTAMEKG--------SYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           +  + +   EVL  M  G        S   D+  YN LI+   + G  ++  GL + + +
Sbjct: 352 KFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRS 411

Query: 173 KR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQI 230
           ++   PD +T+   +  + +     +  E+F+EM   G  P+  T   L+   C +    
Sbjct: 412 QKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVS 471

Query: 231 EQVTTLVRTMHKDMK 245
             V   V    + MK
Sbjct: 472 SAVNFFVEAQRRGMK 486



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 9/173 (5%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+T   +     +   +  +M K G   ++   NS+L    R G F +M E++  M +  
Sbjct: 276 LITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMD 335

Query: 140 YAADISTYNILIN-------IYGRGGFIEKMEGLFQSLP-AKRLKPDVVTWTSRLAAYSR 191
              ++ T+ ILIN       +      +EKM G  +S   +  ++PDVV + + +    +
Sbjct: 336 IQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCK 395

Query: 192 KKLYRRCLEIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
               +  L + E M    GC PD  T   LI       +IE+   L   M+K+
Sbjct: 396 VGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKE 448


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 1/200 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  VF++M++ G  P + ++  ++ +  K   V      +++M + G+ P+ F  NS+
Sbjct: 215 SMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSI 274

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ +  LGQ  +   +   M       +  T+ IL++   + G + +   +F+++  K +
Sbjct: 275 VHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGV 334

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVT 234
           +PD+ T+ + +  Y  ++L     ++FE MI  GC P   +  +LI+  C S    E  +
Sbjct: 335 EPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKS 394

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            L    HK +      Y  L
Sbjct: 395 LLAEMYHKALNPDTVTYSTL 414



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+F +   ++        ++A  +F+EM    + P   +  +L+    K G V++   V
Sbjct: 266 PNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLV 325

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M + G++PD    N++++ Y       + ++V   M +   A    +YNILIN Y +
Sbjct: 326 FETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCK 385

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +++ + L   +  K L PD VT+++ +    +    +  L +F+EM   G +P+  T
Sbjct: 386 SRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVT 445

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK 242
             +L+        +++   L+++M +
Sbjct: 446 YVILLDGFCKHGHLDEALKLLKSMKE 471



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 90/188 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  VFE M R G  P   S+ +L+  Y K+  + + + ++ +M+   L PDT   +++
Sbjct: 355 NEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 414

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    +LG+ ++   +   M       ++ TY IL++ + + G +++   L +S+  K+L
Sbjct: 415 MQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKL 474

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P++V +T  +             E+F ++   G  PD  T  V+I     E   ++   
Sbjct: 475 EPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYD 534

Query: 236 LVRTMHKD 243
           L R M  D
Sbjct: 535 LFRKMEDD 542



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 86/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S   ++  +M    +T  + S  +L+    +  +V     V+ +M K G+ PD    N+
Sbjct: 109 YSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNA 168

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N     G+ ++  E+   M K  +  ++ +Y  +IN   + G       +F+ +    
Sbjct: 169 LINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNG 228

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+VVT+++ + +  + +L    +E   EM++ G  P+  T   ++    +  Q+ + T
Sbjct: 229 CKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEAT 288

Query: 235 TLVRTM 240
            L + M
Sbjct: 289 RLFKEM 294



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 3/216 (1%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           ++   DA A F  M R+   P++      L +++K    +    + NQM    +  + + 
Sbjct: 71  NVCVDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYS 130

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           +N ++N   RL   +    VL  M K     D  T+N LIN     G I++   LF  + 
Sbjct: 131 LNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMV 190

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            +  +P+V+++T+ +    +       +++F++M   GC P+  T   +I +   +  + 
Sbjct: 191 KRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVN 250

Query: 232 QVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267
                +  M   ++  +P     Y        NLGQ
Sbjct: 251 DAMEFLSEM---VERGIPPNVFTYNSIVHGFCNLGQ 283



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/181 (18%), Positives = 74/181 (40%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V  +M +LGI P   +   L+      G + +   + N+M K G +P+     +++N  
Sbjct: 149 SVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGL 208

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G      +V   ME+     ++ TY+ +I+   +   +         +  + + P+V
Sbjct: 209 CKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNV 268

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+ S +  +           +F+EM+     P+  T  +L+     E  + +   +  T
Sbjct: 269 FTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFET 328

Query: 240 M 240
           M
Sbjct: 329 M 329



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/176 (18%), Positives = 80/176 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F+EM   G  P + ++++LL  + K G++ +   ++  M +  L+P+      ++
Sbjct: 426 EALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILI 485

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                 G+ E  +E+ + +       DI TY ++I    + G  ++   LF+ +      
Sbjct: 486 EGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFL 545

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           P+  ++   +  + + +     + + +EM+      +  T ++L+   S ++ I Q
Sbjct: 546 PNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQDEIISQ 601


>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M+ +G +PT+ S+  L+  Y   G +     +   M K+G++PD    N+++N
Sbjct: 200 AIEVFKKMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLIN 259

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G+  +  ++ + M+      +  TYN LIN Y + G  E    L   +    +K 
Sbjct: 260 GFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKA 319

Query: 178 DVVTWT-----------SRLAAYSRKKLYR------------------------RCLEIF 202
           D++T+            ++ AAY  K+L R                        R  +++
Sbjct: 320 DILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLY 379

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + MI +GC+P+  T K+LIS     +  +    +VR M
Sbjct: 380 KSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREM 417



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 84/186 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + EM+R  I+P + +  +++ A+ K G + K   V  +M   G  P     N+++ 
Sbjct: 165 ALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIA 224

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G      ++   MEK     D  T+N LIN + RGG + +   +F  + A  + P
Sbjct: 225 GYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVP 284

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +T+ + +  YS+         + +EM+  G   D  T   LI     E + ++   LV
Sbjct: 285 NTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLV 344

Query: 238 RTMHKD 243
           + + ++
Sbjct: 345 KELDRE 350


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +F EM   G  P + ++ +++   +K  N      + + M  +G +PD    + ++ 
Sbjct: 501 AHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVME 560

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G  G  E+ E V   M++ ++  D   Y +L++++G+ G +EK    +Q++    L P
Sbjct: 561 ALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLP 620

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +V T  S L+A+ R         + + M+  G  P   T  +L+S C+
Sbjct: 621 NVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSCCT 668



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 99/209 (47%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     + E+M + G  P + ++  L+  Y     + +   V N+M + G +PD     +
Sbjct: 393 FDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCT 452

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +    +   M++   + D  TY+++IN  G+ G +     LF  +    
Sbjct: 453 LIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHG 512

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +A  ++ + Y   L+++ +M +AG  PD  T  +++ A      +E+  
Sbjct: 513 CVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAE 572

Query: 235 TL-VRTMHKDMKTALPIY---FNLYGEKG 259
           ++ V    K+     P+Y    +L+G+ G
Sbjct: 573 SVFVEMQQKNWVPDEPVYGLLVDLWGKAG 601



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  VF EM+ +G  P   ++  L+  ++K G +     +  +M ++GL PDTF  +
Sbjct: 427 YLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYS 486

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++N  G+ G       +   M +     ++ TYNI+I +  +    E    L+  +   
Sbjct: 487 VIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNA 546

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +PD VT++  + A            +F EM      PD     +L+        +E+ 
Sbjct: 547 GFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKA 606

Query: 234 TTLVRTM 240
           +   + M
Sbjct: 607 SEWYQAM 613



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 87/183 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++++ M+  G++P   ++ +++    K GN+A    +  +M + G  P+    N M+ 
Sbjct: 466 AMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIA 525

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           L  +   +E   ++   M+   +  D  TY+I++   G  G++E+ E +F  +  K   P
Sbjct: 526 LQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVP 585

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D   +   +  + +     +  E ++ M++AG  P+  T   L+SA     ++     LV
Sbjct: 586 DEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLV 645

Query: 238 RTM 240
           ++M
Sbjct: 646 QSM 648



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 62/121 (51%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G + D     +M+ + GR  +F+ + ++L  M K     ++ TYN LI+ YG   +++
Sbjct: 370 QPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLK 429

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F  +     +PD VT+ + +  +++       + +++ M +AG  PD  T  V+I
Sbjct: 430 EALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVII 489

Query: 222 S 222
           +
Sbjct: 490 N 490



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A +VF EM++    P    + LL+  + K GNV K       M  +GL P+    N
Sbjct: 567 YLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCN 626

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           S+L+ + RL +      ++ +M        + TY +L++
Sbjct: 627 SLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLS 665



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 44/100 (44%)

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D  TY  ++ I GR    + +  L + +     +P+VVT+   +  Y      +  L +F
Sbjct: 376 DGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVF 435

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            EM + GC PD  T   LI   +    I+   ++ + M +
Sbjct: 436 NEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQE 475


>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 426

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERVGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERVGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F++M   G +PD     ++++A
Sbjct: 376 EVFDKMRGLGYFPDSXVIALVLNA 399



 Score = 41.2 bits (95), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R+G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERVGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSXVIALVLNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|414864940|tpg|DAA43497.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
          Length = 816

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 1/181 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+  Y K G++ K     NQM   G+ P     NSM++ +G+  + EK+  ++  ME+  
Sbjct: 254 LIDTYGKAGHLEKVSDTFNQMLSEGVAPSVVTFNSMIHAWGKHHRMEKVASLVRMMEEFQ 313

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TYNILI +Y     I+  E  +  +  + L PDVV+  + L  YS + +  +  
Sbjct: 314 CFPDTRTYNILIALYRESDDIDIAEYYYWKMKTENLVPDVVSCRTLLYGYSIRGMVTKAE 373

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT-ALPIYFNLYGEK 258
            + +EM + G   D  T   L     +   +EQ        H  M +       + +GEK
Sbjct: 374 ALLKEMDERGFMVDEYTQSALTRMYVNVGMLEQAWRWFDRFHHHMNSECFSANIDAFGEK 433

Query: 259 G 259
           G
Sbjct: 434 G 434



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 9/179 (5%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++ EM   G+ P   ++  L+    + G        +  M K GL PD   ++ ++  + 
Sbjct: 158 LWYEMHSFGVAPDNSTYGTLINVCCQGGREWTALLWLGDMCKRGLMPDEVTMSIVMQAHK 217

Query: 121 RLGQFEKME--------EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           + G++E  E        + +  ME  S+  ++ TYN LI+ YG+ G +EK+   F  + +
Sbjct: 218 KAGEYETAEIFFERWSSDSIRRMEGRSHY-NLYTYNTLIDTYGKAGHLEKVSDTFNQMLS 276

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           + + P VVT+ S + A+ +     +   +   M +  C+PD  T  +LI+     D I+
Sbjct: 277 EGVAPSVVTFNSMIHAWGKHHRMEKVASLVRMMEEFQCFPDTRTYNILIALYRESDDID 335



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 91/186 (48%), Gaps = 16/186 (8%)

Query: 23  FNYLP-YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLL 81
           ++ LP Y ++  LI  L     P       +IY+       E+MK + +      + +++
Sbjct: 483 YDILPDYVTYTSLIQLLSTAKLPKK-----AIYY------LEKMKVVKLLSDCIPYSVVI 531

Query: 82  TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141
           ++++K G++   E +  +M  SG++PD FV + +++ Y  +G  ++       M+K    
Sbjct: 532 SSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLY 591

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR--LAAYSRKKLYRRCL 199
            +++ YN LI +Y + G++ +  G ++ L  K L  + + + S   +  YS   + +   
Sbjct: 592 ENVTIYNSLIKLYTKVGYVPEARGAYKLL--KSLDTNAILYASNCMIDLYSDHCMVKEAC 649

Query: 200 EIFEEM 205
           E+F+ +
Sbjct: 650 EVFDSL 655



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 58/131 (44%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N M+  YG +G  ++  E+   ME+     D  TY  LI +       +K     + +  
Sbjct: 458 NVMIKAYGLVGMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKV 517

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            +L  D + ++  ++++++    R    +F EMI +G  PD     +LI A +    ++Q
Sbjct: 518 VKLLSDCIPYSVVISSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQ 577

Query: 233 VTTLVRTMHKD 243
            +     M KD
Sbjct: 578 ASAYFGLMKKD 588



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 54/113 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM   G+ P +  + +L+ AY++ GNV +       M K GL  +  + NS++ LY 
Sbjct: 546 LFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIKLYT 605

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++G   +       ++     A +   N +I++Y     +++   +F SL  +
Sbjct: 606 KVGYVPEARGAYKLLKSLDTNAILYASNCMIDLYSDHCMVKEACEVFDSLKVR 658



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 31/214 (14%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + +MK   + P + S   LL  YS  G V K E ++ +M + G   D +  +++  
Sbjct: 337 AEYYYWKMKTENLVPDVVSCRTLLYGYSIRGMVTKAEALLKEMDERGFMVDEYTQSALTR 396

Query: 118 LYGRLGQFEK----MEEVLTAMEKGSYAADISTY-------------------------- 147
           +Y  +G  E+     +     M    ++A+I  +                          
Sbjct: 397 MYVNVGMLEQAWRWFDRFHHHMNSECFSANIDAFGEKGYIVLAEKAFVCCLKKKMISVSA 456

Query: 148 -NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
            N++I  YG  G +++   +   +    + PD VT+TS +   S  KL ++ +   E+M 
Sbjct: 457 CNVMIKAYGLVGMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMK 516

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                 D     V+IS+ +    +     L R M
Sbjct: 517 VVKLLSDCIPYSVVISSFAKNGDLRMSEYLFREM 550



 Score = 40.4 bits (93), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 41/225 (18%), Positives = 96/225 (42%), Gaps = 12/225 (5%)

Query: 30  SHFMLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLT 82
           S ++    ++    P++FV+   I           A A F  MK+ G+   +  +  L+ 
Sbjct: 543 SEYLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIK 602

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
            Y+K G V +  G    +         +  N M++LY      ++  EV  +++    A 
Sbjct: 603 LYTKVGYVPEARGAYKLLKSLDTNAILYASNCMIDLYSDHCMVKEACEVFDSLKVRGIAN 662

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           + S + +++ +Y + G  +    + + + A  L   ++++ S +  Y         L+IF
Sbjct: 663 EFS-HAMMVCMYKKVGRYDVAHRVCKEMQALGLLTQLLSYNSVIQMYVSGGRTEEALKIF 721

Query: 203 EEMIDAGCYPDGGTAK----VLISACSSEDQIEQVTTLVRTMHKD 243
           ++M+ +   P+  T +    +L+ +  ++++  ++  L R    D
Sbjct: 722 KKMLASNTPPNDATFQALKVILVRSGVTKNETRKLELLRRNNSHD 766



 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/112 (20%), Positives = 52/112 (46%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++ AY   G + +   + N M +  + PD     S++ L       +K    L  M+  
Sbjct: 459 VMIKAYGLVGMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKVV 518

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
              +D   Y+++I+ + + G +   E LF+ +    ++PD+  ++  + AY+
Sbjct: 519 KLLSDCIPYSVVISSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYA 570


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 14/179 (7%)

Query: 87  TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
            G   K   ++ +M + G  PDT     ++    +  + EK   +   M++     D+ T
Sbjct: 430 VGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYT 489

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           Y ILI+ + + G IE+    F  + +    P+VVT+T+ L AY + K   +  +IF  M+
Sbjct: 490 YTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMV 549

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
           DA CYP+  T   LI       +I++              A  +Y  L G  G   S+ 
Sbjct: 550 DAACYPNAVTYSALIDGLCKAGEIQK--------------ACEVYEKLIGTSGNVESDF 594



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 87/185 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDAH + + M   G  P    +  L+  + K G +   + V  +M K G  P      S+
Sbjct: 625 SDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSL 684

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+ +   +VL+ M   S   ++ TY  +I+   + G IEK   L   +  K  
Sbjct: 685 IDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGC 744

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+VVT+T+ +    +       L++F++M   GC P+  T +VLI+ C +   +++   
Sbjct: 745 SPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHL 804

Query: 236 LVRTM 240
           L+  M
Sbjct: 805 LLDEM 809



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 80/180 (44%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           FE      I P + ++  L+    K   V+    +++ M  +G +P+  V +++++ + +
Sbjct: 596 FEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCK 655

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G+ +  +EV   M K  Y   + TY  LI+   + G ++    +   +      P+VVT
Sbjct: 656 IGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVT 715

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +T+ +   S+     + L +   M + GC P+  T   LI       + +    L + M+
Sbjct: 716 YTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMN 775



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 16/220 (7%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVI 97
           ++ +T  L  ++ S     AH +F  M      P   ++  L+    K G + K CE   
Sbjct: 522 VVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYE 581

Query: 98  NQMHKSG---------------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
             +  SG               + P+     ++++   +  +     E+L AM       
Sbjct: 582 KLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEP 641

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           +   Y+ LI+ + + G I+  + +F  +      P V T+TS +    +       +++ 
Sbjct: 642 NQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVL 701

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            EM++  C P+  T   +I   S   +IE+   L+  M +
Sbjct: 702 SEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEE 741



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 43/229 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F++A +    M+     P + ++  LL+ + K      C+ +IN M   G  P+  + NS
Sbjct: 287 FNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNS 346

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN---------------------- 152
           +++ Y   G +    ++   M           YNI I                       
Sbjct: 347 LVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYE 406

Query: 153 --------------------IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
                               + G G F EK   + + +  K   PD  T+T  +    + 
Sbjct: 407 EMLAASCVLNKVNTANFSRCLCGVGKF-EKAFQILKEMMRKGFVPDTSTYTKVITFLCQA 465

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           K   +   +F+EM  AG  PD  T  +LI +      IEQ  +    M 
Sbjct: 466 KKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMR 514



 Score = 40.0 bits (92), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 34/181 (18%), Positives = 72/181 (39%), Gaps = 5/181 (2%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+  G +P + ++  L+    KTG       +  QM+  G  P+      ++N     G 
Sbjct: 739 MEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGL 798

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            ++   +L  M+   +   +  Y+  +  + +  FI  + GL + + +    P    +  
Sbjct: 799 LDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSK-KFIASL-GLLEEMESHETVPIAPVYGM 856

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGC---YPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            + ++S+       LE+ +E+++          G    LI A     Q+E+  TL   M 
Sbjct: 857 LIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMT 916

Query: 242 K 242
           +
Sbjct: 917 R 917


>gi|414864941|tpg|DAA43498.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
          Length = 788

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 1/181 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+  Y K G++ K     NQM   G+ P     NSM++ +G+  + EK+  ++  ME+  
Sbjct: 254 LIDTYGKAGHLEKVSDTFNQMLSEGVAPSVVTFNSMIHAWGKHHRMEKVASLVRMMEEFQ 313

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D  TYNILI +Y     I+  E  +  +  + L PDVV+  + L  YS + +  +  
Sbjct: 314 CFPDTRTYNILIALYRESDDIDIAEYYYWKMKTENLVPDVVSCRTLLYGYSIRGMVTKAE 373

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT-ALPIYFNLYGEK 258
            + +EM + G   D  T   L     +   +EQ        H  M +       + +GEK
Sbjct: 374 ALLKEMDERGFMVDEYTQSALTRMYVNVGMLEQAWRWFDRFHHHMNSECFSANIDAFGEK 433

Query: 259 G 259
           G
Sbjct: 434 G 434



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 9/179 (5%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++ EM   G+ P   ++  L+    + G        +  M K GL PD   ++ ++  + 
Sbjct: 158 LWYEMHSFGVAPDNSTYGTLINVCCQGGREWTALLWLGDMCKRGLMPDEVTMSIVMQAHK 217

Query: 121 RLGQFEKME--------EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           + G++E  E        + +  ME  S+  ++ TYN LI+ YG+ G +EK+   F  + +
Sbjct: 218 KAGEYETAEIFFERWSSDSIRRMEGRSHY-NLYTYNTLIDTYGKAGHLEKVSDTFNQMLS 276

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           + + P VVT+ S + A+ +     +   +   M +  C+PD  T  +LI+     D I+
Sbjct: 277 EGVAPSVVTFNSMIHAWGKHHRMEKVASLVRMMEEFQCFPDTRTYNILIALYRESDDID 335



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 91/186 (48%), Gaps = 16/186 (8%)

Query: 23  FNYLP-YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLL 81
           ++ LP Y ++  LI  L     P       +IY+       E+MK + +      + +++
Sbjct: 483 YDILPDYVTYTSLIQLLSTAKLPKK-----AIYY------LEKMKVVKLLSDCIPYSVVI 531

Query: 82  TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141
           ++++K G++   E +  +M  SG++PD FV + +++ Y  +G  ++       M+K    
Sbjct: 532 SSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLY 591

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR--LAAYSRKKLYRRCL 199
            +++ YN LI +Y + G++ +  G ++ L  K L  + + + S   +  YS   + +   
Sbjct: 592 ENVTIYNSLIKLYTKVGYVPEARGAYKLL--KSLDTNAILYASNCMIDLYSDHCMVKEAC 649

Query: 200 EIFEEM 205
           E+F+ +
Sbjct: 650 EVFDSL 655



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 58/131 (44%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N M+  YG +G  ++  E+   ME+     D  TY  LI +       +K     + +  
Sbjct: 458 NVMIKAYGLVGMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKV 517

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            +L  D + ++  ++++++    R    +F EMI +G  PD     +LI A +    ++Q
Sbjct: 518 VKLLSDCIPYSVVISSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQ 577

Query: 233 VTTLVRTMHKD 243
            +     M KD
Sbjct: 578 ASAYFGLMKKD 588



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 54/113 (47%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F EM   G+ P +  + +L+ AY++ GNV +       M K GL  +  + NS++ LY 
Sbjct: 546 LFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIKLYT 605

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++G   +       ++     A +   N +I++Y     +++   +F SL  +
Sbjct: 606 KVGYVPEARGAYKLLKSLDTNAILYASNCMIDLYSDHCMVKEACEVFDSLKVR 658



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 31/214 (14%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   + +MK   + P + S   LL  YS  G V K E ++ +M + G   D +  +++  
Sbjct: 337 AEYYYWKMKTENLVPDVVSCRTLLYGYSIRGMVTKAEALLKEMDERGFMVDEYTQSALTR 396

Query: 118 LYGRLGQFEK----MEEVLTAMEKGSYAADISTY-------------------------- 147
           +Y  +G  E+     +     M    ++A+I  +                          
Sbjct: 397 MYVNVGMLEQAWRWFDRFHHHMNSECFSANIDAFGEKGYIVLAEKAFVCCLKKKMISVSA 456

Query: 148 -NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
            N++I  YG  G +++   +   +    + PD VT+TS +   S  KL ++ +   E+M 
Sbjct: 457 CNVMIKAYGLVGMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMK 516

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                 D     V+IS+ +    +     L R M
Sbjct: 517 VVKLLSDCIPYSVVISSFAKNGDLRMSEYLFREM 550



 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 41/225 (18%), Positives = 96/225 (42%), Gaps = 12/225 (5%)

Query: 30  SHFMLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLT 82
           S ++    ++    P++FV+   I           A A F  MK+ G+   +  +  L+ 
Sbjct: 543 SEYLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIK 602

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
            Y+K G V +  G    +         +  N M++LY      ++  EV  +++    A 
Sbjct: 603 LYTKVGYVPEARGAYKLLKSLDTNAILYASNCMIDLYSDHCMVKEACEVFDSLKVRGIAN 662

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           + S + +++ +Y + G  +    + + + A  L   ++++ S +  Y         L+IF
Sbjct: 663 EFS-HAMMVCMYKKVGRYDVAHRVCKEMQALGLLTQLLSYNSVIQMYVSGGRTEEALKIF 721

Query: 203 EEMIDAGCYPDGGTAK----VLISACSSEDQIEQVTTLVRTMHKD 243
           ++M+ +   P+  T +    +L+ +  ++++  ++  L R    D
Sbjct: 722 KKMLASNTPPNDATFQALKVILVRSGVTKNETRKLELLRRNNSHD 766



 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/112 (20%), Positives = 52/112 (46%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +++ AY   G + +   + N M +  + PD     S++ L       +K    L  M+  
Sbjct: 459 VMIKAYGLVGMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKVV 518

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
              +D   Y+++I+ + + G +   E LF+ +    ++PD+  ++  + AY+
Sbjct: 519 KLLSDCIPYSVVISSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYA 570


>gi|298710575|emb|CBJ32006.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 706

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 13/195 (6%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM  +G+ P +K +   +TA  K G   +  G++N MHK G  P+ +  N+ ++  G
Sbjct: 221 LLDEMIVMGVQPDLKCYCSAITACGKGGRWKQALGLLNIMHKDGPPPNDYCYNAAISACG 280

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF------QSLP--- 171
           + GQ+ + +E+L+ M       D+ +YN  I+  G+GG  E+   +F        +P   
Sbjct: 281 KSGQWREAKELLSTMRDRGVPPDLISYNSAIDACGKGGRWEEGLKIFVGMVKASEVPWDA 340

Query: 172 ----AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
                K   PD  T+ + + A SR K ++  L   E+M   G     G  +  ++ C+  
Sbjct: 341 DMGHPKPPTPDATTYGAAITACSRGKQWQMALRFLEDMEKKGVERTEGVFQATLAGCARM 400

Query: 228 DQIEQVTTLVRTMHK 242
            +  +    +  M K
Sbjct: 401 GRWRECIVTLDQMRK 415



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  + +EM+  GI     S+  L+ A  +     +    + +M   G+K ++FV ++
Sbjct: 74  WEEAVLLLKEMETRGIQRDAVSYACLIAACGRGMQWERALISLAEMRDVGIKANSFVYSA 133

Query: 115 MLNLYGRLGQFEKMEEVLTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++   +  Q++K   +L  ME      A++  YN   +  G+ G   +   L   +   
Sbjct: 134 AIDACAKGRQWQKALILLRDMEVVDGLPANLICYNAAADACGKAGRPGEALALLAKMQKV 193

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +KP+ V++ S ++A SR   ++R L + +EMI  G  PD       I+AC    + +Q 
Sbjct: 194 GVKPNEVSYLSVISACSRVGDWKRALLLLDEMIVMGVQPDLKCYCSAITACGKGGRWKQA 253

Query: 234 TTLVRTMHKD 243
             L+  MHKD
Sbjct: 254 LGLLNIMHKD 263



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E+M++ G+  T       L   ++ G   +C   ++QM KSGL+P     NS++   GR
Sbjct: 375 LEDMEKKGVERTEGVFQATLAGCARMGRWRECIVTLDQMRKSGLQPRAAAYNSVITACGR 434

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILI 151
            G++++   +L  M       D+ T N ++
Sbjct: 435 GGEWQRAIAILKQMSSRGATPDVITLNAVM 464



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 61/137 (44%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           TP   ++   +TA S+          +  M K G++    V  + L    R+G++ +   
Sbjct: 349 TPDATTYGAAITACSRGKQWQMALRFLEDMEKKGVERTEGVFQATLAGCARMGRWRECIV 408

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
            L  M K       + YN +I   GRGG  ++   + + + ++   PDV+T  + + + +
Sbjct: 409 TLDQMRKSGLQPRAAAYNSVITACGRGGEWQRAIAILKQMSSRGATPDVITLNAVMTSCA 468

Query: 191 RKKLYRRCLEIFEEMID 207
           + + +++   I + M D
Sbjct: 469 QSQRWKQARVILDFMRD 485



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 64/150 (42%)

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
           A  K G   +   ++ +M K G+KP+     S+++   R+G +++   +L  M       
Sbjct: 173 ACGKAGRPGEALALLAKMQKVGVKPNEVSYLSVISACSRVGDWKRALLLLDEMIVMGVQP 232

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+  Y   I   G+GG  ++  GL   +      P+   + + ++A  +   +R   E+ 
Sbjct: 233 DLKCYCSAITACGKGGRWKQALGLLNIMHKDGPPPNDYCYNAAISACGKSGQWREAKELL 292

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             M D G  PD  +    I AC    + E+
Sbjct: 293 STMRDRGVPPDLISYNSAIDACGKGGRWEE 322



 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 41/96 (42%)

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            YN ++    R G  E+   L + +  + ++ D V++   +AA  R   + R L    EM
Sbjct: 60  AYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYACLIAACGRGMQWERALISLAEM 119

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            D G   +       I AC+   Q ++   L+R M 
Sbjct: 120 RDVGIKANSFVYSAAIDACAKGRQWQKALILLRDME 155



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/92 (18%), Positives = 44/92 (47%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            ++M++ G+ P   ++  ++TA  + G   +   ++ QM   G  PD   +N+++    +
Sbjct: 410 LDQMRKSGLQPRAAAYNSVITACGRGGEWQRAIAILKQMSSRGATPDVITLNAVMTSCAQ 469

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             ++++   +L  M   +  A I   ++L  +
Sbjct: 470 SQRWKQARVILDFMRDPNNVATIECGDLLFPV 501


>gi|297799466|ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 758

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 10/171 (5%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   AH VF+ M +   +P   +   L++ Y++ G       +  QM + G+KPD F   
Sbjct: 373 YAEVAHEVFDRMSKRESSPFAWNS--LISGYAELGQYEDAMALYFQMAEDGVKPDRFTFP 430

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +L   G +G  +  E +   + K  +  D+   N L+++Y + G I K   +F  +P K
Sbjct: 431 RVLKACGGIGSVQIGEAIHRDLVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIPNK 490

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
               D V+W S L  Y    L    L+IF  M+  G  PD    KV IS+ 
Sbjct: 491 ----DYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIDPD----KVAISSV 533



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 15/186 (8%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +LT Y   G + +   +   M ++G+ PD   I+S+L    R+  F+   ++   + +  
Sbjct: 498 MLTGYLHHGLLHEALDIFRLMVQNGIDPDKVAISSVL---ARVLSFKHGRQLHGWVIRRG 554

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              ++S  N LI +Y + G + +   +F  +    L+ D V+W + ++A+SR        
Sbjct: 555 MEWELSVANALIVLYSKRGQLGQACFIFDQM----LERDTVSWNAIISAHSRDS---NGF 607

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD--MKTALPIY---FNL 254
           + FE+M  A   PDG T   ++S C++   +E    L   M K+  +   +  Y    NL
Sbjct: 608 KYFEQMQHADAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGINPKMEHYACMVNL 667

Query: 255 YGEKGV 260
           YG  G+
Sbjct: 668 YGRAGM 673



 Score = 38.9 bits (89), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++A+S+  N  K      QM  +  KPD     S+L+L    G  E  E + + M K  
Sbjct: 596 IISAHSRDSNGFK---YFEQMQHADAKPDGITFVSVLSLCANTGMVEDGERLFSLMSK-E 651

Query: 140 YAAD--ISTYNILINIYGRGGFIEK 162
           Y  +  +  Y  ++N+YGR G +E+
Sbjct: 652 YGINPKMEHYACMVNLYGRAGMMEE 676


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 8/178 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y   A  +F+E+        + S   +++ Y+ TGN  +   +  +M K+ +KPD   + 
Sbjct: 184 YIESAQKMFDEIP----VKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMV 239

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   + G  +   +V + ++     +++   N LI++Y + G +E   GLFQ L  K
Sbjct: 240 TVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK 299

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               DV++W + +  Y+   LY+  L +F+EM+ +G  P+  T   ++ AC+    I+
Sbjct: 300 ----DVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAID 353



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 26/220 (11%)

Query: 22  NFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEE----------MKRLGIT 71
           NF+ LPY      I+       PNL   I++  F   HA+  +          M  LG+ 
Sbjct: 49  NFDGLPYA-----ISVFETIQEPNLL--IWNTMFR-GHALSSDPVSAIKLYVCMISLGLL 100

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P   +   LL + +K     + + +   + K G + D +V  S++++Y + G+++   +V
Sbjct: 101 PNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKV 160

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
                 GS   D+ +Y  LI  Y   G+IE  + +F  +P K    DVV+W + ++ Y+ 
Sbjct: 161 F----DGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVK----DVVSWNAIISGYAD 212

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               +  L++F+EM+     PD  T   ++SAC+    I+
Sbjct: 213 TGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQ 252



 Score = 37.7 bits (86), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 10/173 (5%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ + +  G+T        L+  Y+K G++     V N MH   L       N+M+  + 
Sbjct: 360 VYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLS----ACNAMIFGFA 415

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDV 179
             G+     ++ + M K     D  T+  L++     G ++    +F+S+    ++ P +
Sbjct: 416 MHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKL 475

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSEDQIE 231
             +   +       L++      EEMI+     PDG     L+ AC     +E
Sbjct: 476 EHYGCMIDLLGHLGLFKEA----EEMINTMTMEPDGVIWCSLLKACKMHGNVE 524


>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 426

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENRKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/174 (17%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   + +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 39/223 (17%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIXVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           E+F++M   G +PD     ++++A     + ++   +   M +
Sbjct: 376 EVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQE 418



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 354 -DIXVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 1/180 (0%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           + +  EM+  G+ P   ++  L++   KTG+ A    V+ +M K GL+P      ++++ 
Sbjct: 553 YELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHA 612

Query: 119 YGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           Y      ++  ++   M        +   YNILI+   R   +++   L + +  KR++P
Sbjct: 613 YCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRP 672

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+ + L     KK+  +  E+ + M++  C PD  T +VL    S+  +IE++   V
Sbjct: 673 NTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEKLKHFV 732



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   FEEM   G +P    +  L++     G +     V++++  +G   D    N +++
Sbjct: 482 AMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLIS 541

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  + E++ E+LT ME+     D  TYN LI+  G+ G       + + +  + L+P
Sbjct: 542 GFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRP 601

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA-KVLISACSSEDQIEQVTTL 236
            VVT+ + + AY  KK     ++IF EM      P       +LI A    + +++  +L
Sbjct: 602 SVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISL 661

Query: 237 VRTM 240
           +  M
Sbjct: 662 MEDM 665



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 81/171 (47%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F EMK  G+     ++  L++A+    N+ +      +M  SG  PD  V  S+++    
Sbjct: 451 FNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCI 510

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+      V++ ++   ++ D S YN+LI+ + +   +E++  L   +    +KPD +T
Sbjct: 511 AGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTIT 570

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + + ++   +   +    ++ E+MI  G  P   T   +I A  S+  +++
Sbjct: 571 YNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDE 621



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 1/174 (0%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVINSMLNLYGRLGQFE 126
           +G+ P +     L+    K G       ++ +M    + +P+T   N +++ + + G F+
Sbjct: 351 VGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFD 410

Query: 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
           +  E+   M +     ++ T N L++   + G + +    F  +  K LK +  T+T+ +
Sbjct: 411 RAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALI 470

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +A+       R ++ FEEM+ +GC PD      LIS      ++   + +V  +
Sbjct: 471 SAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKL 524



 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLL--LTAYSKTGNVAKCEGVINQMHKS 103
           L V + S    DA  V +EM +     ++   ++   L    ++    +  G++ ++ + 
Sbjct: 181 LRVLLKSGRAGDALHVLDEMPQANSGFSVTGEIVFGELVRSGRSFPDGEVVGLVAKLGER 240

Query: 104 GLKPDTFVINSMLNLYGRLGQFEK---MEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
           G+ PD F    +  L G+L   +K     EVL  + +   A D ++ N L+   GRG  I
Sbjct: 241 GVFPDGF---KLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRDI 297

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           ++M  L   +  ++++P VVT+   +    + +     L++F+ +   G
Sbjct: 298 KRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKG 346


>gi|302768873|ref|XP_002967856.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
 gi|300164594|gb|EFJ31203.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
          Length = 731

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 89/172 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ V+  M++ GI    + +   + A S +GN+ +   + + M K G+KPD    +++++
Sbjct: 241 AYEVYTMMRKRGIGGCPEPYTAAVHACSSSGNLERAFSIYDDMKKDGVKPDEIFFSALID 300

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           + G   + +   +VL  +EK S       ++ L+ +    G  EK   L++++ A  ++P
Sbjct: 301 VAGHASKIDCAFDVLQEVEKYSLVPGPVIFSSLMGVCSNTGNWEKAIFLYENIQAVGIRP 360

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
            V T  + + A  R K ++  L+  EE+ +AG  P+  T  +L+ AC  E++
Sbjct: 361 SVSTLNALMTALCRGKQFQNALQSLEELKEAGVSPNQLTYSILLEACEKENE 412



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 23/202 (11%)

Query: 60  AVFEEMKRLGI--TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AV E  +  G+  +PT+ ++ +LL+     G++    G    + ++G KPD  +  ++++
Sbjct: 48  AVEEAFRYTGLIKSPTLSTYNMLLSVCCNAGDMNGAFGAFAALKRAGFKPDCMIYTTLIS 107

Query: 118 LYGRLGQFE-----------------KMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
              +  + +                  + +V   ME     A++ TY  +I+   R G +
Sbjct: 108 TCSKALKTDLVFQARNPGPILHWTNSVLAQVYREMESVGVEANLLTYGAIIDGCARTGEL 167

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-IDAGCYPDGGTAKV 219
            K  G+++ + +K++KPD V + S + A  R    +R  E+F E+  +    P+  T   
Sbjct: 168 AKAFGIYRIMLSKKIKPDRVIFNSLINACGRSGAVKRAFEVFTELKSENPINPNHVTMCS 227

Query: 220 LISACSSE---DQIEQVTTLVR 238
           LI ACS     D   +V T++R
Sbjct: 228 LIDACSKAGDGDSAYEVYTMMR 249



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 86/194 (44%), Gaps = 1/194 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ EM+ +G+   + ++  ++   ++TG +AK  G+   M    +KPD  + NS++N  G
Sbjct: 138 VYREMESVGVEANLLTYGAIIDGCARTGELAKAFGIYRIMLSKKIKPDRVIFNSLINACG 197

Query: 121 RLGQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           R G  ++  EV T ++ +     +  T   LI+   + G  +    ++  +  + +    
Sbjct: 198 RSGAVKRAFEVFTELKSENPINPNHVTMCSLIDACSKAGDGDSAYEVYTMMRKRGIGGCP 257

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
             +T+ + A S      R   I+++M   G  PD      LI       +I+    +++ 
Sbjct: 258 EPYTAAVHACSSSGNLERAFSIYDDMKKDGVKPDEIFFSALIDVAGHASKIDCAFDVLQE 317

Query: 240 MHKDMKTALPIYFN 253
           + K      P+ F+
Sbjct: 318 VEKYSLVPGPVIFS 331


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 89/184 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +  +E    G  P   ++  L+    K G+      V++ M   GL PD +  NS+++
Sbjct: 292 ALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLIS 351

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +LG+ E+  ++L  M     + +  TYN +I+   +   +++   + + L +K + P
Sbjct: 352 GLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILP 411

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV T+ S +        ++  +++FEEM   GC PD  T  +LI +  S  ++E+   L+
Sbjct: 412 DVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLL 471

Query: 238 RTMH 241
           + M 
Sbjct: 472 KEME 475



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 92/196 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEMK  G  P   ++ +L+ +   +  + +   ++ +M  +G   +  + N++++
Sbjct: 432 AMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLID 491

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  + E+ EE+   ME    + D  TYN LI+   +   +E    L   +  + L+P
Sbjct: 492 GFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRP 551

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+ S L  + +    ++  +I + M  +GC PD  T   LIS      +++  + L+
Sbjct: 552 DKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLL 611

Query: 238 RTMHKDMKTALPIYFN 253
           R++        P  +N
Sbjct: 612 RSIQMKGMVLTPHAYN 627



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 77/166 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F+EM+  G++    ++  L+    K+  V     +++QM   GL+PD F  NS
Sbjct: 499 IEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNS 558

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + + G  +K  +++  M       DI TY  LI+   + G ++    L +S+  K 
Sbjct: 559 LLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKG 618

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           +      +   + A  ++      + +F EM+D    PD  T K++
Sbjct: 619 MVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIV 664



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 1/179 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLY 119
           V EEMK  G        ++ + +Y K     +  G++  M     +KPDT   N +LN+ 
Sbjct: 119 VLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVL 178

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               + + +E   ++M +     D+ST+NILI    +   +     + + +P+  L PD 
Sbjct: 179 VDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDE 238

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
            T+T+ +  Y         L I E+M++ GC     T  VLI+    + +I+Q  + ++
Sbjct: 239 TTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQ 297



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 82/180 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + EEM   G++P   +   ++  Y + GN+     +  QM + G       +N ++N + 
Sbjct: 225 MMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFC 284

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G+ ++    +       +  D  TYN L+N   + G  +    +  ++    L PD+ 
Sbjct: 285 KQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIY 344

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+ S ++   +       ++I ++M+   C P+  T   +IS+   E+++++ T + R +
Sbjct: 345 TYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLL 404



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 64  EMKRL----GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           E+ RL    GI P + +   L+     + N      +  +M   G +PD F  N +++  
Sbjct: 399 EIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSL 458

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               + E+   +L  ME    A ++  YN LI+ + +   IE+ E +F  +  + +  D 
Sbjct: 459 CSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDS 518

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+ + +    + K      ++ ++MI  G  PD  T   L++       I++   +V+T
Sbjct: 519 VTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQT 578

Query: 240 M 240
           M
Sbjct: 579 M 579



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 2/177 (1%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M R  I   + +  +L+ A  K   V     ++ +M   GL PD     +++  Y   G 
Sbjct: 194 MVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGN 253

Query: 125 FEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            +    +   M E G    D+ T N+LIN + + G I++     Q   ++  +PD  T+ 
Sbjct: 254 LDGALRIKEQMVEYGCPCTDV-TVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYN 312

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + +    +    +  +E+ + M+  G  PD  T   LIS      +IE+   ++  M
Sbjct: 313 TLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM 369



 Score = 37.0 bits (84), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 3/173 (1%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKM 128
           + P      L+ T   +T  VA    V N   K     P + V   +L   G+ G FE M
Sbjct: 58  LPPDFTPKQLIETLRRQTDEVAALR-VFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYM 116

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTSRLA 187
             VL  M+      D   + I +  YG+    +++ G+ + +  + R+KPD   +   L 
Sbjct: 117 RRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLN 176

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                   +        M+      D  T  +LI A     Q+     ++  M
Sbjct: 177 VLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEM 229


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 91/185 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A++ + EM   GI P + ++  ++ A  K   + K   V+N M K+G+ PD    NS+L+
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 274

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ ++    L  M       D+ TY++L++   + G   +   +F S+  + LKP
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++ T+ + L  Y+ K        + + M+  G +PD     +LI A +++ +++Q   + 
Sbjct: 335 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVF 394

Query: 238 RTMHK 242
             M +
Sbjct: 395 SKMRQ 399



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 85/197 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    ++M+  G+ P + ++ LL+    K G   +   + + M K GLKP+     ++L
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y   G   +M  +L  M +     D   ++ILI  Y   G +++   +F  +  + L 
Sbjct: 344 QGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLN 403

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT+ + +    +       +  FE+MID G  P       LI    + ++ E+   L
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 463

Query: 237 VRTMHKDMKTALPIYFN 253
           +  M         I+FN
Sbjct: 464 ILEMLDRGICLNTIFFN 480



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 88/197 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF +M++ G+ P   ++  ++    K+G V        QM   GL P   V NS+++
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 ++E+ EE++  M       +   +N +I+ + + G + + E LF+ +    +KP
Sbjct: 450 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+T+ + +  Y         +++   M+  G  P+  T   LI+      ++E    L 
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 238 RTMHKDMKTALPIYFNL 254
           + M     +   I +N+
Sbjct: 570 KEMESSGVSPDIITYNI 586



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA   FE+M   G++P    +  L+          + E +I +M   G+  +T   NS++
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G+  + E++   M +     ++ TYN LIN Y   G +++   L   + +  LK
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 543

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           P+ VT+++ +  Y +       L +F+EM  +G  PD  T  +++  
Sbjct: 544 PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQG 590



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 77/175 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V   M + G+ P   ++  +L  Y  +G   +  G + +M   G++PD    + +++
Sbjct: 250 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+  +  ++  +M K     +I+TY  L+  Y   G + +M GL   +    + P
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 369

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           D   ++  + AY+ +    + + +F +M   G  P+  T   +I       ++E 
Sbjct: 370 DHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVED 424



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 6/178 (3%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P + S+  ++  + K G+  K     ++M   G+ PD    NS++    +    +K 
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            EVL  M K     D  TYN +++ Y   G  ++  G  + + +  ++PDVVT+ S L  
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY-SLLMD 309

Query: 189 YSRKKLYRRCLE---IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           Y  K    RC+E   IF+ M   G  P+  T   L+   +++  + ++  L+  M ++
Sbjct: 310 YLCKN--GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 11/152 (7%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM   GI         ++ ++ K G V + E +   M + G+KP+    N+++N
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G+ ++  ++L+ M       +  TY+ LIN Y +   +E    LF+ + +  + P
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579

Query: 178 DVVTW---------TSRLAAYSRKKLYRRCLE 200
           D++T+         T R AA   K+LY R  E
Sbjct: 580 DIITYNIILQGLFQTRRTAA--AKELYVRITE 609



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 9/179 (5%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127
           +  TP +K     L A  +T +      V+ +M + G  P+ F  N +L       + ++
Sbjct: 123 IAFTPLLKG----LCADKRTSDAMDI--VLRRMTELGCIPNVFSYNILLKGLCDENRSQE 176

Query: 128 MEEVLTAMEK---GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             E+L  M     G    D+ +Y  +IN + + G  +K    +  +  + + PDVVT+ S
Sbjct: 177 ALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +AA  + +   + +E+   M+  G  PD  T   ++    S  Q ++    ++ M  D
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD 295



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 35/222 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           ++  +FE M R+G+ P + ++  L+  Y   G + +   +++ M   GLKP+T   ++++
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADI-------------------------------- 144
           N Y ++ + E    +   ME    + DI                                
Sbjct: 554 NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQ 613

Query: 145 ---STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
              STYNI+++   +    +    +FQ+L    LK +  T+   + A  +        ++
Sbjct: 614 IELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDL 673

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           F      G  P+  T +++      +  +E++  L  +M  +
Sbjct: 674 FVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 715



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 82/181 (45%), Gaps = 4/181 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM+  G++P + ++ ++L    +T   A  + +  ++ +SG + +    N +L
Sbjct: 564 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 623

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +    +   ++   +       +  T+NI+I+   + G  ++ + LF +  +  L 
Sbjct: 624 HGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV 683

Query: 177 PDVVTWTSRLAAYS--RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           P+   WT RL A +   + L     ++F  M D GC  D G    ++       +I +  
Sbjct: 684 PNY--WTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAG 741

Query: 235 T 235
           T
Sbjct: 742 T 742



 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 8/212 (3%)

Query: 56  SDA-HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM---HKSGLKPDTFV 111
           SDA   V   M  LG  P + S+ +LL          +   +++ M      G  PD   
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
             +++N + + G  +K       M       D+ TYN +I    +   ++K   +  ++ 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              + PD +T+ S L  Y      +  +   ++M   G  PD  T  +L+       +  
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 232 QVTTLVRTMHK-DMKTALPIYFNL---YGEKG 259
           +   +  +M K  +K  +  Y  L   Y  KG
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 11/197 (5%)

Query: 55  FSDAHAVFEEMKRLGITPTM-----------KSHMLLLTAYSKTGNVAKCEGVINQMHKS 103
             DA  +F+ M   G +P +           ++   L+  + + GNV   + +  +M  +
Sbjct: 201 LEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISN 260

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G+ PD    N++L      G+ EK  E+    +K     D +T NI+IN   +G  +++ 
Sbjct: 261 GVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEA 320

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             LF SLP   ++ DVVT+   +  + ++  + R  +I+ EM+  G  P   T   ++  
Sbjct: 321 WDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDG 380

Query: 224 CSSEDQIEQVTTLVRTM 240
              ++++E+   +V +M
Sbjct: 381 FCKQNRLEEARQMVDSM 397



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 70/139 (50%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K GN  K + +  +MH+ G+ P+    N M++ Y   G++   E++L  M + +   D+ 
Sbjct: 92  KDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVV 151

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           T++ LIN + + G +   E L++ +  + + P  +T++S +  + +         +F+ M
Sbjct: 152 TFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLM 211

Query: 206 IDAGCYPDGGTAKVLISAC 224
           +  GC PD  T   LI  C
Sbjct: 212 VSKGCSPDIITLNTLIDGC 230



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 96/193 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F  +   G+   + ++ +L+  + K GN  + E +  +M   G+ P T   NSM
Sbjct: 318 DEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSM 377

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + +  + E+  +++ +M     + D+ T++ LI  Y + G ++    LF  +  + L
Sbjct: 378 VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGL 437

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             D +T+ + +  + +        +IFEEM+ +G  PD  T + +++   ++ ++++  T
Sbjct: 438 VADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLT 497

Query: 236 LVRTMHKDMKTAL 248
           ++  + K +   L
Sbjct: 498 MLEDLQKSVDHEL 510



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 11  LCVAQRAPHSWN-FNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLG 69
           +C   +   +W+ FN LP       +   ++ +   + VF+    F  A  ++ EM   G
Sbjct: 311 MCKGNKVDEAWDLFNSLPVNG----VETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKG 366

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           I P+  ++  ++  + K   + +   +++ M   G  PD    ++++  Y + G+ +   
Sbjct: 367 IIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGL 426

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           E+ + M +    AD  TYN LI+ + + G +   + +F+ + +  + PD +T+ S LA  
Sbjct: 427 ELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGL 486

Query: 190 SRKKLYRRCLEIFEEM 205
             K   ++ L + E++
Sbjct: 487 CTKAELQKGLTMLEDL 502



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 86/196 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM   G++P + +   LL    + G + K   +     KS +  DT   N ++N
Sbjct: 250 AQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIIN 309

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + ++  ++  ++       D+ TYNILI ++ + G   + E ++  +  K + P
Sbjct: 310 GMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIP 369

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             VT+ S +  + ++       ++ + M+  GC PD  T   LI       +++    L 
Sbjct: 370 STVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELF 429

Query: 238 RTMHKDMKTALPIYFN 253
             M +    A  I +N
Sbjct: 430 SEMCQRGLVADTITYN 445



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 92/204 (45%), Gaps = 14/204 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F EM   GI P + ++  ++  Y   G  +  E ++  M +  + PD    ++++N
Sbjct: 99  AQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALIN 158

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G+    EE+   M + +      TY+ +I+ + +   +E  + +F  + +K   P
Sbjct: 159 AFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSP 218

Query: 178 DVVTWTSRLAAYSRKK---LYRRC--------LEIFEEMIDAGCYPDGGTAKVLISACSS 226
           D++T  + +    R K   ++  C         ++F+EMI  G  PD  T   L++    
Sbjct: 219 DIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCE 278

Query: 227 EDQIEQVTTLVRTMHK---DMKTA 247
             ++E+   + +   K   D+ TA
Sbjct: 279 NGKLEKALEMFKVFQKSKMDLDTA 302



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 89/197 (45%), Gaps = 11/197 (5%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +  +M    I P + +   L+ A+ K G V+  E +  +M +  + P T   +S
Sbjct: 131 WSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSS 190

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN---------IYG--RGGFIEKM 163
           M++ + +  + E  + +   M     + DI T N LI+         I+G  + G +   
Sbjct: 191 MIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVA 250

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + LFQ + +  + PD+VT  + LA         + LE+F+    +    D  T  ++I+ 
Sbjct: 251 QDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIING 310

Query: 224 CSSEDQIEQVTTLVRTM 240
               +++++   L  ++
Sbjct: 311 MCKGNKVDEAWDLFNSL 327



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 77/176 (43%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G    + +   L+    + G V +   ++++M + G +PD     +++N   +LG 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                 +L  M++    A++  Y+ +++   + G   K + +F  +  K + P+V+T+  
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            +  Y     +    ++  +MI+    PD  T   LI+A   E ++     L R M
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREM 176


>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 426

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EMK  G+ P   S+  LLT Y +     +   V +
Sbjct: 79  LVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKKFLEALSVFS 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM   G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +K  G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V + M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMI 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 227 MIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVE 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D + + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 287 IDQILFQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDTAIHILAGAGRIEEATYV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 86/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y + G   + + +   M K G++P+    N+
Sbjct: 130 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN +I IYG+    EK   L Q + ++ 
Sbjct: 190 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG 249

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 250 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 298



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/158 (18%), Positives = 70/158 (44%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           ++  ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  +
Sbjct: 1   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDY 60

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
            K   + + ++   Y  D+  YN +I ++G+     +   L   +    + P+  ++++ 
Sbjct: 61  SKAISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTL 120

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L  Y   K +   L +F EM +  C  D  T  ++I  
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDV 158



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 89/184 (48%), Gaps = 8/184 (4%)

Query: 43  TPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           T N  + I+  ++    A+ + +EM+  GI P   ++  +++ + K G + +   +  ++
Sbjct: 221 TYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
             SG++ D  +  +M+  Y R G     + +L  +++     D    +  I+I    G I
Sbjct: 281 RSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRI 336

Query: 161 EKMEGLF-QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           E+   +F Q++ A  +K D+  +   +   S+ K Y   +E+F++M   G +PD     +
Sbjct: 337 EEATYVFRQAIDAGEVK-DITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAI 395

Query: 220 LISA 223
           +++A
Sbjct: 396 VLNA 399



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           LL+ Y K  NV +   V ++M   G  PD+ VI  +LN YG+L +F+K  +V   M++
Sbjct: 364 LLSKYKKYANVVE---VFDKMRGLGYFPDSNVIAIVLNAYGKLHEFDKANDVYMEMQE 418


>gi|224089585|ref|XP_002308767.1| predicted protein [Populus trichocarpa]
 gi|222854743|gb|EEE92290.1| predicted protein [Populus trichocarpa]
          Length = 454

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+   +FEEM  LGI P + S+  L+  + K         V   +    L P     N+
Sbjct: 93  LSNCMDLFEEMLELGIKPDIWSYNTLMHCFFKLERPDDAYRVFTDIILCYLSPSQATYNT 152

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN   + G  E    +   +++  +   + TYNILIN   +   ++    + + L A  
Sbjct: 153 MLNGLCKCGFVENALMLFRKLKRHGFVPSLVTYNILINGLCKAWKLKTARWMLKELGASG 212

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+V+T+T+ +    R + + + LEIFEEMID G   DG     ++ A     +IE+ +
Sbjct: 213 LVPNVITYTTVMRCCFRSRRFEQGLEIFEEMIDKGYTFDGFAYCTVVGALVKTCRIEEAS 272

Query: 235 T-LVRTMHKDMKTALPIY---FNLYGEKG 259
             + R ++ D+   +  Y    NLY + G
Sbjct: 273 HYMERMVNTDIGLDMASYNTLINLYCKGG 301



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +  T  +N  +  + +    ++ E V+    +     D+ TYN LIN Y R    +    
Sbjct: 4   RSSTRFLNICIASFCKAKHLQRAETVIIDGVRLGVLPDVVTYNTLINAYSRFVSFDAAYS 63

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +   +    +KPD+VT+ S +A   R  L   C+++FEEM++ G  PD
Sbjct: 64  VLDRMKEASIKPDIVTYNSLIAGAMRHCLLSNCMDLFEEMLELGIKPD 111



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 72/164 (43%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           + + ++ K  ++ + E VI    + G+ PD    N+++N Y R   F+    VL  M++ 
Sbjct: 12  ICIASFCKAKHLQRAETVIIDGVRLGVLPDVVTYNTLINAYSRFVSFDAAYSVLDRMKEA 71

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
           S   DI TYN LI    R   +     LF+ +    +KPD+ ++ + +  + + +     
Sbjct: 72  SIKPDIVTYNSLIAGAMRHCLLSNCMDLFEEMLELGIKPDIWSYNTLMHCFFKLERPDDA 131

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             +F ++I     P   T   +++       +E    L R + +
Sbjct: 132 YRVFTDIILCYLSPSQATYNTMLNGLCKCGFVENALMLFRKLKR 175



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 35/165 (21%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A  +F ++KR G  P++ ++ +L+    K   +     ++ ++  SGL P+     
Sbjct: 162 FVENALMLFRKLKRHGFVPSLVTYNILINGLCKAWKLKTARWMLKELGASGLVPNVITYT 221

Query: 114 SMLNLYGRLGQFEKMEEVLTAM-------------------------EKGSY-------- 140
           +++    R  +FE+  E+   M                         E+ S+        
Sbjct: 222 TVMRCCFRSRRFEQGLEIFEEMIDKGYTFDGFAYCTVVGALVKTCRIEEASHYMERMVNT 281

Query: 141 --AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
               D+++YN LIN+Y +GG +E   G+   +  +  + D  T T
Sbjct: 282 DIGLDMASYNTLINLYCKGGKLEMAHGVLDKMEKEGFERDEYTNT 326


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 89/185 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A++ + EM   GI P + ++  ++ A  K   + K   V+N M K+G+ PD    NS+L+
Sbjct: 220 AYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 279

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ ++    L  M       ++ TY+ L+N   + G   +   +F S+  + L+P
Sbjct: 280 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 339

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + L  Y+ K        + + M+  G  PD     +LI A + +++++Q   + 
Sbjct: 340 DIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVF 399

Query: 238 RTMHK 242
             M +
Sbjct: 400 SKMRQ 404



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 9/190 (4%)

Query: 33  MLINFLLLQH--TPNLF-------VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA 83
           ML+   + QH   PN+        V   S    DA   FE+M   G+TP +  +  L+  
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHG 455

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                   K E +I +M   G+  +T   NS+++ + + G+  + E++   M +     D
Sbjct: 456 LCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 515

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           I TYN LI+     G +++   L  S+ +  +KPD+VT+ + +  Y R       L +F+
Sbjct: 516 IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFK 575

Query: 204 EMIDAGCYPD 213
           EM+ +G  P+
Sbjct: 576 EMVSSGVSPN 585



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 78/154 (50%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F+ M + G+ P + ++  LL  Y+  G + +   +++ M ++G++PD  V N +
Sbjct: 323 TEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 382

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y +  + ++   V + M +     ++  Y  +I++  + G ++     F+ +  + L
Sbjct: 383 ICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGL 442

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P+++ +TS +        + +  E+  EM+D G
Sbjct: 443 TPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRG 476



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 84/197 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    ++M+  G+ P + ++  L+    K G   +   + + M K GL+PD     ++L
Sbjct: 289 EAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLL 348

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y   G   +M  +L  M +     D   +NILI  Y +   +++   +F  +    L 
Sbjct: 349 QGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 408

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VV + + +    +       +  FE+MID G  P+      LI    + D+ ++   L
Sbjct: 409 PNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEEL 468

Query: 237 VRTMHKDMKTALPIYFN 253
           +  M         I+FN
Sbjct: 469 ILEMLDRGICLNTIFFN 485



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 81/177 (45%), Gaps = 4/177 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V   M + G+ P   ++  +L  Y  +G   +  G + +M   G++P+    +S++N
Sbjct: 255 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMN 314

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+  +  ++  +M K     DI+TY  L+  Y   G + +M  L   +    ++P
Sbjct: 315 YLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQP 374

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD----GGTAKVLISACSSEDQI 230
           D   +   + AY++++   + + +F +M   G  P+    G    VL  + S +D +
Sbjct: 375 DHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P + S+  +L  + K G+  K     ++M   G+ PD    +S++    +    +K 
Sbjct: 196 GSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKA 255

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            EVL  M K     D  TYN +++ Y   G  ++  G  + + +  ++P+VVT++S +  
Sbjct: 256 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNY 315

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             +        +IF+ M   G  PD  T + L+   +++  + ++  L+  M ++
Sbjct: 316 LCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN 370



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK---GSYAADISTYNILIN 152
           V+ +M + G  PD F  N++L       + ++  E+L  M     G    D+ +YN ++N
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            + + G  +K    +  +  + + PDVVT++S +AA  + +   + +E+   M+  G  P
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP 269

Query: 213 DGGT-AKVLISACSSEDQIEQVTTLVRTMHKD 243
           D  T   +L   CSS    E + TL + M  D
Sbjct: 270 DCMTYNSILHGYCSSGQPKEAIGTL-KKMRSD 300



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 81/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF +M++ G+ P +  +  ++    K+G+V        QM   GL P+  V  S+++
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 454

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 +++K EE++  M       +   +N +I+ + + G + + E LF  +    +KP
Sbjct: 455 GLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 514

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++T+ + +             ++   M+  G  PD  T   LI+      +++    L 
Sbjct: 515 DIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALF 574

Query: 238 RTM 240
           + M
Sbjct: 575 KEM 577



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+ V+   I+       +  A  +  EM   GI         ++ ++ K G V + E 
Sbjct: 443 TPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 502

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + + M + G+KPD    N++++     G+ ++  ++L +M       DI TY  LIN Y 
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 562

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           R   ++    LF+ + +  + P+++T+
Sbjct: 563 RVSRMDDALALFKEMVSSGVSPNIITY 589



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/211 (17%), Positives = 87/211 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +   M  +G+ P + ++  L+  Y +   +     +  +M  SG+ P+    N 
Sbjct: 532 MDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 591

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L       +    +E+  ++ K     ++STYNI+++   +    ++   +FQ+L    
Sbjct: 592 ILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 651

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+ +  T+   + A  +        ++F      G  PD  T  ++      +  +E++ 
Sbjct: 652 LQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELD 711

Query: 235 TLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            L  +M ++  +A     N    K + R ++
Sbjct: 712 DLFLSMEENGCSADSRMLNSIVRKLLQRGDI 742


>gi|449445529|ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Cucumis sativus]
 gi|449523383|ref|XP_004168703.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Cucumis sativus]
          Length = 803

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 88/176 (50%), Gaps = 2/176 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +F+     + A  +FE    +G+ P   ++  +L+++ K G   +  G+ N+M ++  
Sbjct: 605 LSIFLAKGKLNLACKLFEIFSDMGVNPVKYTYNSMLSSFVKKGYFHQAWGIFNEMGENVC 664

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTA-MEKGSYAADISTYNILINIYGRGGFIEKME 164
             D    N ++   G++G+ +    VL   ME+G Y  DI  YN LIN  G+ G ++ + 
Sbjct: 665 PADIATYNVIIQGLGKMGRADLASSVLEKLMEQGGYL-DIVMYNTLINALGKAGRMDDVN 723

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            LF  +    + PDVVT+ + +  +S+    +   +  + M+D+GC P+  T   L
Sbjct: 724 KLFGQMRNSGINPDVVTFNTLIEVHSKAGRLKDAYKFLKMMLDSGCSPNHVTDTTL 779



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 87/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V+EE+K  G  P   ++ +++    K+  +     + N+M  +GL PDT V NS+L
Sbjct: 303 DALIVWEELKGSGHEPDAFTYRIIIQGCCKSCRMDDATMIFNEMEYNGLIPDTIVYNSLL 362

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   +  +  +  ++   M +    A   TYNILI+   R G  E    LF  L  K   
Sbjct: 363 NGLFKARKVTEACQLFDKMVQEDVRASPWTYNILIDGLFRNGRAEAGYTLFCDLKKKGQI 422

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D VT++  +    +++L    L++ EEM   G   D  T   L+ A   + Q + +  L
Sbjct: 423 VDAVTYSIIILQLCKERLLEEALQLVEEMEARGFVVDLITITSLLIAMHKQGQWDGLERL 482

Query: 237 VRTMHK 242
           ++ + +
Sbjct: 483 MKHIRE 488



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/263 (19%), Positives = 99/263 (37%), Gaps = 64/263 (24%)

Query: 40  LQHTPNLFVFIFSI-----YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
             H+P+ +  IF I     Y  +   + + MKR G++    +  +LL A+ ++G      
Sbjct: 86  FNHSPSTYSQIFHILCRSGYLHEVPPLLDSMKRDGVSVDSHTFKVLLDAFIRSGKYDAAL 145

Query: 95  GVINQMHKSGLK------------------------------------------------ 106
            +++ M   G                                                  
Sbjct: 146 EILDHMEDLGTSLELNTYNSVLVALLRKNQVGLALSIFFKLLDGFNNGGQVDSAATTFHF 205

Query: 107 -PDTFVINSMLNLYGRLG---QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
            P++   N +L    +L    +F+K+ + L A+E  S+   +  YNI I  +G  G+++ 
Sbjct: 206 LPNSLACNELLVALRKLDMRVEFKKVFDKLRAIE--SFEFSVYGYNICIYAFGCWGYLDT 263

Query: 163 MEGLFQSLPAKRL-----KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
              LF+ +  K L      PD+ T+ S +         +  L ++EE+  +G  PD  T 
Sbjct: 264 ALSLFKEMKEKSLVSESFSPDLCTYNSIIHVLCLVGKVKDALIVWEELKGSGHEPDAFTY 323

Query: 218 KVLISACSSEDQIEQVTTLVRTM 240
           +++I  C    +++  T +   M
Sbjct: 324 RIIIQGCCKSCRMDDATMIFNEM 346


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      +EE+   G   ++    +L+  + K G++   + V N + K GL+P     N
Sbjct: 105 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFN 164

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + +AM       D+ TY++LIN   +   ++    LF  +  K
Sbjct: 165 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 224

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + +       +EI+++M+     PD  T   LI     +  ++Q 
Sbjct: 225 GLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 284

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 285 HDLIDEM 291



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 86/174 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +VF  + + G+ P++ S   L+  Y + G++ +   + + MH SG++PD +  + ++N
Sbjct: 144 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 203

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  + +   E+   M       +  T+  LI+ + + G ++    +++ + ++ L P
Sbjct: 204 GLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSP 263

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           D++T+ + +    +K   ++  ++ +EM   G  PD  T   LI  C  E  +E
Sbjct: 264 DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLE 317



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 90/199 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA+ +F+EM   G+ P   +   L+  + K+G V     +  QM    L PD    N++
Sbjct: 212 DDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTL 271

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G  ++  +++  M       D  TY  LI+   + G +E      + +  + +
Sbjct: 272 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENI 331

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D V +T+ ++   ++  Y    ++  EM+ AG  PD GT  ++I+    +  +   + 
Sbjct: 332 RLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSK 391

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L++ M +D      + +N+
Sbjct: 392 LLKEMQRDGHVPSVVTYNV 410



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 57  DAHAVFEEMKRL---GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           D    FE  KR+    I     ++  L++   + G     E V+ +M  +GLKPDT    
Sbjct: 315 DLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYT 374

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            ++N + + G      ++L  M++  +   + TYN+L+N
Sbjct: 375 MIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMN 413


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 1/201 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +FE M   G  P   ++  LL    K     +   +  +M + G  PD     ++L 
Sbjct: 571 AHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLY 630

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +  +G+ E+  EV   M    +  D+  YN L+  + R G   + + LFQ + +++ KP
Sbjct: 631 GFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKP 690

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM-IDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           D V+    +   S+ K     +E+FE M  D GC PD  T   LI     E ++ +   +
Sbjct: 691 DTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKV 750

Query: 237 VRTMHKDMKTALPIYFNLYGE 257
            + + +   +  P  FN+  E
Sbjct: 751 FKEIDRLKLSPDPHAFNVLLE 771



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A A+F  M       P + S+ +L+  + K   + + E +  QM      P+    N+ L
Sbjct: 465 AFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFL 524

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   R G+    + V   M     + D+ TY+ LI+ +      ++   LF+++ ++  +
Sbjct: 525 NGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCR 584

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT+   L    ++       E+F +M++ GC PD  T   L+    +  +IEQ   +
Sbjct: 585 PNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEV 644

Query: 237 VRTM 240
              M
Sbjct: 645 FDEM 648



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 73/156 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M  L   P + ++   L    + G +A  +GV  +M  +G  PD    +++++
Sbjct: 501 AEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIH 560

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +    + ++  E+   M       +  TYN L++   +    ++   LF+ +  +   P
Sbjct: 561 GFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDP 620

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D VT+T+ L  +       + +E+F+EM+  G  PD
Sbjct: 621 DRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 656



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 74/169 (43%), Gaps = 1/169 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +AH +F +M   G  P   ++  LL  +   G + +   V ++M   G  PD    N +
Sbjct: 604 DEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCL 663

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR- 174
           L  + R G+  + +++   M       D  ++NI+I+   +   ++    +F+ +     
Sbjct: 664 LKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHG 723

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             PD+VT+ S +     ++     +++F+E+      PD     VL+ A
Sbjct: 724 CSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 772



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 2/200 (1%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L  F+      +A  +F  M + G  P    +  ++ A+ K  N+ +   +  +M     
Sbjct: 241 LVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESK 300

Query: 106 KP-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            P +     + L+   + G+ E+  E    M++ S ++    Y++LI +    G I+K E
Sbjct: 301 APLNNVAWTAFLSGLCKSGKIEQAFEACRTMQE-SLSSSQPVYDMLIRLLIESGRIDKAE 359

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
                +  + ++P   T  S +    +       L + E MI  G  PD  T  +LI+  
Sbjct: 360 EACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINEL 419

Query: 225 SSEDQIEQVTTLVRTMHKDM 244
              D+I++    ++ M + +
Sbjct: 420 CKADKIQEAQEFLQGMDRKI 439



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 7/198 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV---INS 114
           A  VFE+M   G+ P   ++ +L+ +     N  +      +M   G KP + +   +  
Sbjct: 148 AGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTE 207

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            L   G+ G+F ++      +EK      +    +L+N   +   IE  + LF+++    
Sbjct: 208 CLKATGKEGEFSRV--FGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASK-LFRAMVKSG 264

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA-KVLISACSSEDQIEQV 233
            KPD   ++  + A+ + +      ++F EM      P    A    +S      +IEQ 
Sbjct: 265 CKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQA 324

Query: 234 TTLVRTMHKDMKTALPIY 251
               RTM + + ++ P+Y
Sbjct: 325 FEACRTMQESLSSSQPVY 342



 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + +T  L+ F        A  VF+EM   G  P + ++  LL  + + G   + + +   
Sbjct: 623 VTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQV 682

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILI-NIYGRG 157
           M     KPDT   N M++   +  + +   EV   ME+    + D+ TYN LI  + G  
Sbjct: 683 MVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQ 742

Query: 158 GFIEKMEGLFQSLPAKRLKPD 178
              E M+ +F+ +   +L PD
Sbjct: 743 RLSEAMK-VFKEIDRLKLSPD 762



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SAC 224
            F+ L A+  K DV T+   L    R +  ++  ++FE+M+  G  P+G T  VL+ S+C
Sbjct: 116 FFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSC 175

Query: 225 SSEDQIEQVTTLVRTMHKDMKTALPIY 251
              +  E V      + K  K +  +Y
Sbjct: 176 YERNSDEAVRFFGEMVDKGFKPSSTLY 202


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 92/196 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM++ G  P + ++ +L+    K G + +    +N M   G KP+    N +L 
Sbjct: 262 AMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILR 321

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++   E +L+ M +   +  + T+NILIN   R   + +   + + +P     P
Sbjct: 322 SMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVP 381

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +++   L  + ++K   R +E  E M+  GCYPD  T   L++A   + +++    ++
Sbjct: 382 NSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEIL 441

Query: 238 RTMHKDMKTALPIYFN 253
             +     + + I +N
Sbjct: 442 NQLSSKGCSPVLITYN 457



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 2/195 (1%)

Query: 29  PSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG 88
           P H  + N L   + P L  F        A    E M   G  P + ++  LLTA  K G
Sbjct: 375 PKHGCVPNSL--SYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG 432

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
            V     ++NQ+   G  P     N++++   ++G+ E   E+L  M +     DI TY+
Sbjct: 433 KVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYS 492

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            L+   GR G +++   +F  +    +KP  VT+ + +    + +   R ++    M++ 
Sbjct: 493 TLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEK 552

Query: 209 GCYPDGGTAKVLISA 223
           GC P   T  +LI  
Sbjct: 553 GCKPTEATYTILIEG 567



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 5/180 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E M   G  P + +   L+  + ++G   K   ++  +  SG  PD    N ++  Y +
Sbjct: 129 LERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCK 188

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYN-ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            G+ +K  EVL   E+ S A D+ TYN IL ++   G   E ME L + L  +   PDV+
Sbjct: 189 SGEIDKALEVL---ERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQL-QRECYPDVI 244

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T  + A        + +++ +EM   GC PD  T  VLI+    E ++++    +  M
Sbjct: 245 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 304



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M   G  PD     S++  + R G+ +K   ++  +E      D+ TYN+LI  Y +
Sbjct: 129 LERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCK 188

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G I+K     + L    + PDVVT+ + L +       +  +E+ +  +   CYPD  T
Sbjct: 189 SGEIDKA---LEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVIT 245

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHK 242
             +LI A  ++  + Q   L+  M K
Sbjct: 246 YTILIEATCNDSGVGQAMKLLDEMRK 271



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 85/186 (45%), Gaps = 2/186 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  +M R G +P++ +  +L+    +   + +   V+ +M K G  P++   N +L
Sbjct: 331 DAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLL 390

Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + + +  + ++  E L  M  +G Y  DI TYN L+    + G ++    +   L +K  
Sbjct: 391 HGFCQEKKMDRAIEYLEIMVSRGCYP-DIVTYNTLLTALCKDGKVDAAVEILNQLSSKGC 449

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P ++T+ + +   ++       +E+ EEM   G  PD  T   L+     E ++++   
Sbjct: 450 SPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIK 509

Query: 236 LVRTMH 241
           +   M 
Sbjct: 510 IFHDME 515



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 8/227 (3%)

Query: 33  MLINFLLLQHTPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           +L + L    +P++  F   I F         A  V E+M + G  P   S+  LL  + 
Sbjct: 335 LLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFC 394

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           +   + +    +  M   G  PD    N++L    + G+ +   E+L  +     +  + 
Sbjct: 395 QEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLI 454

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN +I+   + G  E    L + +  K LKPD++T+++ L    R+      ++IF +M
Sbjct: 455 TYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDM 514

Query: 206 IDAGCYPDGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY 251
                 P   T   +++  C ++     +  L   + K  K     Y
Sbjct: 515 EGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATY 561



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 4/170 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E ++  G  P + ++ +L+  Y K+G + K   V+ +M    + PD    N++L 
Sbjct: 160 ATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILR 216

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ ++  EVL    +     D+ TY ILI        + +   L   +  K  KP
Sbjct: 217 SLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKP 276

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSS 226
           DVVT+   +    ++      ++    M   GC P+  T  +++ S CS+
Sbjct: 277 DVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCST 326


>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
 gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 609

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 44/253 (17%)

Query: 34  LINFLLLQHTPNL----FVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAY 84
           ++ +L  QH  N     F+ + + Y     FS A  V + M + G  P++ S   L+ AY
Sbjct: 128 ILEWLRTQHWWNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAY 187

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM---EKGSYA 141
            +     K E V  +M  SG +P       +L  +    ++++ E +   +   ++ S+ 
Sbjct: 188 GRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFK 247

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAK---------------------------- 173
            D   ++++I +Y + G   +   LF  +  +                            
Sbjct: 248 PDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETNYKEVSSIYDQ 307

Query: 174 ----RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
                LKPDVV+++  + AY + +     L +FEEM+DAG  P   +  +LI A +    
Sbjct: 308 MQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGL 367

Query: 230 IEQVTTLVRTMHK 242
           +E+  T+ + M +
Sbjct: 368 VEEAHTVFKAMRR 380



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 77/163 (47%)

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           F   + +  +++++M+R  + P + S+ LL+ AY K     +   V  +M  +G++P   
Sbjct: 294 FETNYKEVSSIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRK 353

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N +++ +   G  E+   V  AM +     D+ +Y  ++  Y     ++  E  F+ +
Sbjct: 354 SYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRI 413

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
               LKP+VV + + +  YS+     R + ++E M   G  P+
Sbjct: 414 KEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPN 456



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 16/218 (7%)

Query: 34  LINFLLLQHTPNLFVFIFSIY-------FSDAHAVFEEMKRLGI---TPTMKSHMLLLTA 83
           L+N       P+  +F   IY       ++ A  +F +M   GI   T T  S M   T 
Sbjct: 238 LLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETN 297

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
           Y +  ++       +QM ++ LKPD    + ++  YG+  + E+   V   M        
Sbjct: 298 YKEVSSI------YDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPT 351

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
             +YNILI+ +   G +E+   +F+++   R++PD+ ++T+ + AY          + F 
Sbjct: 352 RKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFR 411

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            + + G  P+      L+   S  + +E+V  +   M 
Sbjct: 412 RIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMR 449



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 90/182 (49%), Gaps = 2/182 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AVFEEM   G+ PT KS+ +L+ A++ +G V +   V   M +  ++PD     +M+
Sbjct: 335 EALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMV 394

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y      +  E+    +++     ++  Y  L+  Y +   +E++  +++ +  + ++
Sbjct: 395 LAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVE 454

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSEDQIEQVTT 235
           P+   +T+ +  + R   +   +  F+EM +A  YP    AK +L+S   + ++ E+   
Sbjct: 455 PNQTIYTTIMDVHGRNSDFGNAVIWFKEM-EARGYPADKKAKNILLSLAKTPEEQEEANE 513

Query: 236 LV 237
           L 
Sbjct: 514 LT 515



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 45  NLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           N+ +  F+I     +AH VF+ M+R  + P + S+  ++ AY    ++   E    ++ +
Sbjct: 356 NILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKE 415

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            GLKP+  V  +++  Y +L   E++  V   M       + + Y  +++++GR
Sbjct: 416 DGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGR 469



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 53/115 (46%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  +  ++ +     A   F  +K  G+ P +  +  L+  YSK  NV +   V  
Sbjct: 387 LCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYE 446

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M   G++P+  +  ++++++GR   F         ME   Y AD    NIL+++
Sbjct: 447 RMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILLSL 501


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 91/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE M   GI  T+ ++  L+ A S  G V + + + N   + G++PD F+ N+++N
Sbjct: 308 AMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALIN 367

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   G  ++  E++  MEK     D  TYN L+      G +++  GL + +  + ++P
Sbjct: 368 SHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQP 427

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+V++ + ++ YS K   +  +++ +EM+  G  P   T   +I       Q      LV
Sbjct: 428 DLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLV 487

Query: 238 RTM 240
           + M
Sbjct: 488 KEM 490



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 80/179 (44%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM   G++ T+ ++ L +      G  A+   ++ +M + GL PD F  N ++N Y + G
Sbjct: 244 EMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEG 303

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           + +K  ++   M      A + TY  LI+     G +++ + LF     + ++PD+  + 
Sbjct: 304 KEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYN 363

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           + + ++       R  EI  EM      PD  T   L+       ++++   L+  M K
Sbjct: 364 ALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTK 422



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 1/198 (0%)

Query: 57  DAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           DA  VF+EM   G + P    +  L+  Y   GN+        +M   G+       N  
Sbjct: 201 DATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLF 260

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++     G+  +   ++  M +   A D  TYNILIN Y + G  +K   +F+ +  K +
Sbjct: 261 VHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGI 320

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +  VVT+TS + A S K + +    +F + +  G  PD      LI++  +   +++   
Sbjct: 321 RATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFE 380

Query: 236 LVRTMHKDMKTALPIYFN 253
           ++  M K   T   + +N
Sbjct: 381 IMGEMEKKRITPDDVTYN 398



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM++  ITP   ++  L+      G + +  G+I +M K G++PD    N++++
Sbjct: 378 AFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLIS 437

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN---IYGRGGFIEKMEGLFQSLPAKR 174
            Y   G  +   +V   M    +   + TYN +I    + G+GG     E L + +    
Sbjct: 438 GYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGG---DAEDLVKEMVGNG 494

Query: 175 LKPDVVTWTS 184
           + PD  T+ S
Sbjct: 495 ITPDDSTYIS 504



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  + EEM + GI P + S+  L++ YS  G++     V ++M   G  P     N+
Sbjct: 410 LDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNA 469

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           M+      GQ    E+++  M       D STY  LI
Sbjct: 470 MIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLI 506


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 100/211 (47%), Gaps = 3/211 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +  EM R    PT+ ++  ++ AY +   + +   V  +M ++G +PD     ++++++ 
Sbjct: 386 LLHEMNRDRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVTYCTLIDIHA 445

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  E   ++   M++   + D  TY+ ++N  G+GG +     LF  +      P++V
Sbjct: 446 KAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLV 505

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   +A  ++ + Y   ++++ +M  AG  PD  T  +++        +++   +   M
Sbjct: 506 TYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEM 565

Query: 241 HKDMKTALPIY---FNLYGEKGVARSNLGQY 268
            +D     P+Y    +L+G+ G     LG Y
Sbjct: 566 RRDWAPDEPVYGLLVDLWGKAGNVDKALGWY 596



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 85/171 (49%), Gaps = 1/171 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A+ +F EM   G TP + ++ +++   +K  N      +   M  +G +PD    + 
Sbjct: 485 LAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSI 544

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ + G  G  ++ E V   M +  +A D   Y +L++++G+ G ++K  G + ++    
Sbjct: 545 VMEVLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDG 603

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L+P+V T  S L+A+ +   ++    + + M+  G  P   T  +L+S C+
Sbjct: 604 LQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCT 654



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  VFEEM+  G  P   ++  L+  ++K G +     +  +M + GL PDTF  +
Sbjct: 414 YLREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYS 473

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M+N  G+ GQ     ++   M +     ++ TYNI+I +  +    + +  L++ +   
Sbjct: 474 AMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVA 533

Query: 174 RLKPDVVTWT 183
             +PD +T++
Sbjct: 534 GFRPDKITYS 543



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 69/153 (45%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+ + G+  QF  M  +L  M +      + TYN +I+ YGR  ++ 
Sbjct: 357 QPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLR 416

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F+ +     +PD VT+ + +  +++       ++++  M + G  PD  T   ++
Sbjct: 417 EAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMV 476

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           +      Q+     L   M ++  T   + +N+
Sbjct: 477 NCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNI 509



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A AVF EM+R    P    + LL+  + K GNV K  G  + M + GL+P+    N
Sbjct: 554 HLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCN 612

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           S+L+ + ++ +F+    VL  M        + TY +L++
Sbjct: 613 SLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLS 651


>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 706

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 11/220 (5%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  + EEM R    P   +  +L+ ++ ++G V +  G++++M K G  P   V N 
Sbjct: 206 WGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDRAMGILDRMSKCGCTPGAIVYNE 265

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +  LG+ ++   + + M       DI +YN ++    R    E    L   +  K 
Sbjct: 266 IISCFAELGRVKEALHLFSCM---PCKPDIFSYNAVLKGLCRAERWEDAGELITEMVRKD 322

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD VT+ + ++    K L    LE+ ++M   G  PD  T   LI+A S +  +E   
Sbjct: 323 CSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALINAFSEQGCVEDAL 382

Query: 235 TLVRTMHKDMKTALPIYFNLYGEKGVARS----NLGQYIG 270
            L+R+M     T    Y ++   KG+ R     ++GQ IG
Sbjct: 383 ELLRSMPCSPNTV--CYKSVL--KGLCRDGQWEDVGQLIG 418



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 8/201 (3%)

Query: 53  IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           I   D  A  + +  +   P +    LL+      G +A  EGV+     +    D    
Sbjct: 72  IRLGDLDAALQLVGSMSEPPAVVPCTLLIKKLCAAGRLADAEGVLRASEAA----DAVDH 127

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N+++  Y R G+    E +L ++   S AAD+ TYN LI  Y RGG +E    L  S+P 
Sbjct: 128 NTLVAGYCRAGRLADAERMLRSL-AASGAADVVTYNTLIAGYCRGGRLEDARLLVASMPP 186

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
               P+   + + L      K +    E+ EEM      PD  T  +LI +      +++
Sbjct: 187 ---APNSYAYNTLLKGLCSAKQWGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDR 243

Query: 233 VTTLVRTMHKDMKTALPIYFN 253
              ++  M K   T   I +N
Sbjct: 244 AMGILDRMSKCGCTPGAIVYN 264



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 7/171 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V ++M + G  P   ++  L+ A+S+ G V   E  +  +      P+T    S+L 
Sbjct: 346 ALEVVDQMPKYGRKPDNFTYSALINAFSEQGCV---EDALELLRSMPCSPNTVCYKSVLK 402

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R GQ+E + +++  M +   A D   + ++I+   + G ++    + Q +P     P
Sbjct: 403 GLCRDGQWEDVGQLIGEMVRNDCAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSP 462

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSE 227
           DVV +TS L  ++        L++F+ M    C P+  T   VL+  C  E
Sbjct: 463 DVVMYTSLLNGFAEYGRVDDSLKLFKSMT---CKPNTVTYNYVLMGLCKVE 510



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 3/159 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +  EM R   +P   +   +++     G V     V++QM K G KPD F  ++
Sbjct: 308 WEDAGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSA 367

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N +   G  E   E+L +M     + +   Y  ++    R G  E +  L   +    
Sbjct: 368 LINAFSEQGCVEDALELLRSM---PCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRND 424

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             PD + +   +    ++ L    LE+ +E+ + GC PD
Sbjct: 425 CAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPD 463



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 3/172 (1%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            P   ++  LL            E ++ +M ++   PD      +++ + + G  ++   
Sbjct: 187 APNSYAYNTLLKGLCSAKQWGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDRAMG 246

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +L  M K         YN +I+ +   G +++   LF  +P    KPD+ ++ + L    
Sbjct: 247 ILDRMSKCGCTPGAIVYNEIISCFAELGRVKEALHLFSCMPC---KPDIFSYNAVLKGLC 303

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           R + +    E+  EM+   C PD  T   +IS    +  ++    +V  M K
Sbjct: 304 RAERWEDAGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPK 355



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VFE+M+  G TP +  +  L    S+ G V     ++N M     K DT   +S L    
Sbjct: 553 VFEKMQMYGCTPNVIIYSTLNNGLSEKGCVDNALKLLNNMS---CKADTICYSSALKGLC 609

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R   +E   E++  M +     D  T++I+I    + GF+E    +   +      P++V
Sbjct: 610 RAELWEDAGELIVEMFRKDCPPDEVTFSIIITNLCQQGFVEYATEVSDLMLKYECTPNIV 669

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            ++S +  +S        L++   M    C PD
Sbjct: 670 IYSSLINGFSEHGHLEDALKLLRSM---PCEPD 699



 Score = 44.7 bits (104), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 7/216 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + D   +  EM R    P      L++    + G V     V+ ++   G  PD  +  S
Sbjct: 410 WEDVGQLIGEMVRNDCAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPDVVMYTS 469

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +LN +   G+ +   ++  +M   +   +  TYN ++    +    E    L   +  + 
Sbjct: 470 LLNGFAEYGRVDDSLKLFKSM---TCKPNTVTYNYVLMGLCKVELWEDAGKLIDEMVGQE 526

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+ +T++  +++  +K L    +++FE+M   GC P+      L +  S +  ++   
Sbjct: 527 CPPNEMTFSILISSLCQKGLVECAIDVFEKMQMYGCTPNVIIYSTLNNGLSEKGCVDNAL 586

Query: 235 TLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYIG 270
            L+  M     T   I ++    KG+ R+ L +  G
Sbjct: 587 KLLNNMSCKADT---ICYS-SALKGLCRAELWEDAG 618



 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 3/194 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  + +EM      P   +  +L+++  + G V     V  +M   G  P+  + ++
Sbjct: 512 WEDAGKLIDEMVGQECPPNEMTFSILISSLCQKGLVECAIDVFEKMQMYGCTPNVIIYST 571

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           + N     G  +   ++L  M   S  AD   Y+  +    R    E    L   +  K 
Sbjct: 572 LNNGLSEKGCVDNALKLLNNM---SCKADTICYSSALKGLCRAELWEDAGELIVEMFRKD 628

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PD VT++  +    ++       E+ + M+   C P+      LI+  S    +E   
Sbjct: 629 CPPDEVTFSIIITNLCQQGFVEYATEVSDLMLKYECTPNIVIYSSLINGFSEHGHLEDAL 688

Query: 235 TLVRTMHKDMKTAL 248
            L+R+M  +  T++
Sbjct: 689 KLLRSMPCEPDTSV 702



 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 35/214 (16%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V +E+   G +P +  +  LL  +++ G V     +   M     KP+T   N +L    
Sbjct: 451 VLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSMT---CKPNTVTYNYVLMGLC 507

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP--------- 171
           ++  +E   +++  M       +  T++ILI+   + G +E    +F+ +          
Sbjct: 508 KVELWEDAGKLIDEMVGQECPPNEMTFSILISSLCQKGLVECAIDVFEKMQMYGCTPNVI 567

Query: 172 -----------------AKRL------KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
                            A +L      K D + ++S L    R +L+    E+  EM   
Sbjct: 568 IYSTLNNGLSEKGCVDNALKLLNNMSCKADTICYSSALKGLCRAELWEDAGELIVEMFRK 627

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            C PD  T  ++I+    +  +E  T +   M K
Sbjct: 628 DCPPDEVTFSIIITNLCQQGFVEYATEVSDLMLK 661


>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 352

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A +VF EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTTSYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/154 (18%), Positives = 70/154 (45%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           Y   K +   L +F EM +  C  D  T  ++I 
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMID 157



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +PD +     +   +          +F + IDAG
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAG 350


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 84/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+EM   G+ P   ++  L+ A  +       + +  +M   GL PD    +++
Sbjct: 197 DEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTL 256

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ + + G  ++M  +   M++     D+  Y I+IN   R   ++  + +   L  + L
Sbjct: 257 LDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGL 316

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDV T+T+ +    R+      L +F +M + GC P   +  VL+  C   +    V  
Sbjct: 317 KPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQ 376

Query: 236 LVRTM 240
           L+  M
Sbjct: 377 LIHEM 381



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           ++F+EM+  GI   + +  +L+  +    +V     V  +  K G KPD  +  ++++  
Sbjct: 61  SLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGV 120

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            R+G+ E    +L  M       D+ T N L+  Y   G I+K+  +F  + +K LKPDV
Sbjct: 121 CRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDV 180

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            +++  +  Y + +     +E+F+EM   G  P+  T   LI A     +      L R 
Sbjct: 181 YSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRK 240

Query: 240 M 240
           M
Sbjct: 241 M 241



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 82/186 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
              +F  M   G+ P + S+ + +  Y K   + +   + ++M   G+ P+    N+++ 
Sbjct: 164 VRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIK 223

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +  +    + +   M     + DI  Y+ L++ + + G +++M  LFQ +  + +KP
Sbjct: 224 ALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKP 283

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+V +T  +    R +  +   E+   +I  G  PD  T   L+     E  I +   L 
Sbjct: 284 DLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLF 343

Query: 238 RTMHKD 243
           R M +D
Sbjct: 344 RKMEED 349



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 3/217 (1%)

Query: 36  NFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           N   L    N F F+  + +    +VF +  + G  P +     L+    + G      G
Sbjct: 74  NVCTLSILINCFCFLHHVDY--GFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAG 131

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M   G  PD    NS++  Y   G+ +K+ ++   M       D+ +Y+I IN Y 
Sbjct: 132 LLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYC 191

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +   I++   LF  +  + + P+ VT+ + + A  +    R    +F +M   G  PD  
Sbjct: 192 KVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDIL 251

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDM-KTALPIY 251
               L+     +  ++++  L + M + + K  L +Y
Sbjct: 252 AYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVY 288



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F +M   G++P + ++  LL  + K GN+ +   +  +M +  +KPD  V   ++
Sbjct: 233 DAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIII 292

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   R  + +  +EVL+ +       D+ TY  L++   R G I +   LF+ +      
Sbjct: 293 NGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCM 352

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           P   ++   L    +       +++  EM D G Y D  T   L
Sbjct: 353 PGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFL 396



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 65/153 (42%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           GN+       N+M     +P     N +L+   R+ ++E +  +   ME      ++ T 
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           +ILIN +     ++    +F     +  KPDVV +T+ +    R         + +EM  
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGL 138

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            GC PD  T   L+    S+ +I++V  +   M
Sbjct: 139 VGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLM 171



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 72/186 (38%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA A F  M      P +     LL++  +         +  +M   G+K +   ++ 
Sbjct: 21  LDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSI 80

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N +  L   +    V     K  +  D+  +  LI+   R G  E   GL + +    
Sbjct: 81  LINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVG 140

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDVVT  S +  Y  +    +  +IF  M+  G  PD  +  + I+     ++I++  
Sbjct: 141 CVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAM 200

Query: 235 TLVRTM 240
            L   M
Sbjct: 201 ELFDEM 206


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 94/189 (49%), Gaps = 12/189 (6%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHML--LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           +  DA  VFEE      +P +   +   L+TAY++ G   +   +  +M   G+KPD+FV
Sbjct: 363 HVEDATRVFEE------SPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFV 416

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            +S+LN    L  +E+ ++V   + K  + +DI   N L+N+Y + G IE     F  +P
Sbjct: 417 CSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIP 476

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            +     +V+W++ +   ++    +  L++F++M+  G  P+  T   ++ AC+    + 
Sbjct: 477 VR----GIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVA 532

Query: 232 QVTTLVRTM 240
           +      +M
Sbjct: 533 EAKHYFNSM 541



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F DA ++F+ +    +     S   L + Y  +    +   + + M  SG++P+ F ++S
Sbjct: 61  FGDARSLFDAIPDRSVV----SWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSS 116

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+N+   L    +  ++   + K  Y +D  + N L+++Y + G +E    +F  +    
Sbjct: 117 MINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA--- 173

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            KPD+V+W + +A     + + R LE+  EM  +G  P+  T    + AC+
Sbjct: 174 -KPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACA 223



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 8/176 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+ M        M +   +++ +S+     +   +   MH  G+  +   ++++L
Sbjct: 265 DARLVFKLMPE----RDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVL 320

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                L       ++     K  +  D    N LI+ YG+ G +E    +F+  P     
Sbjct: 321 KSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPI---- 376

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            D+V +TS + AY++       L ++ EM D G  PD      L++AC+S    EQ
Sbjct: 377 VDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQ 432


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 1/186 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F+EMK  G+ PT K +  +L  Y K G V K  G++ +M + G     +    ++ 
Sbjct: 249 AISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIK 308

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G+ G+ E+   +   M K     D+   N LIN+ G+ G +     LF+ + + +  P
Sbjct: 309 GVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTP 368

Query: 178 DVVTWTSRLAA-YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +VVT+ + + A +  K         +E+M + G  P   T  +LI      +++E+   L
Sbjct: 369 NVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLL 428

Query: 237 VRTMHK 242
           +  M +
Sbjct: 429 LEEMDE 434



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 89/175 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A+ +F+E++      + + + +++    K G +++   + N+M K G  PD +  N+
Sbjct: 457 YEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNA 516

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R+G  ++   +L  ME+     D++++NI++N + R G  +    +F  +   +
Sbjct: 517 LMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSK 576

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +KPDVV++ + L   SR  ++    ++ +EM   G   D  T   ++ A    D+
Sbjct: 577 IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDE 631



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 40  LQHTPNLFVF---IFSIYFSDAHAV-----FEEMKRLGITPTMKSHMLLLTAYSKTGNVA 91
           LQ TPN+  +   I +++ S A A      +E+MK  G+ P+  ++ +L+  + KT  V 
Sbjct: 364 LQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVE 423

Query: 92  KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           K   ++ +M + G  P      S++N  G+  ++E   E+   + +    +    Y ++I
Sbjct: 424 KALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMI 483

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
              G+ G + +   LF  +      PDV  + + ++   R  +      +   M + GC 
Sbjct: 484 KHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCT 543

Query: 212 PDGGTAKVLISA 223
           PD  +  ++++ 
Sbjct: 544 PDLNSHNIILNG 555



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 1/171 (0%)

Query: 54  YFSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +    H ++ EM   G   P   ++  L+ A+ K G       + ++M ++GL P   + 
Sbjct: 209 HHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIY 268

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            ++L +Y +LG+ EK   ++  M++   A  + TY  LI   G+ G +E+   +F ++  
Sbjct: 269 TTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLK 328

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +  KPDVV   + +    +       +++FEEM    C P+  T   +I A
Sbjct: 329 EGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKA 379



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 104/280 (37%), Gaps = 76/280 (27%)

Query: 40  LQHTPNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           L  T  ++  I  IYF       A  + +EMK  G   T+ ++  L+    K G V +  
Sbjct: 261 LHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAY 320

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQ-------FEKMEE------------VLTA- 134
            +   M K G KPD  +IN+++NL G+ G+       FE+ME             V+ A 
Sbjct: 321 SIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKAL 380

Query: 135 ----------------MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
                           M++        TY+ILI+ + +   +EK   L + +  K   P 
Sbjct: 381 FESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPC 440

Query: 179 VVTWTSRLAAYSRKKLYR-----------------------------RC------LEIFE 203
              + S + A  + K Y                              +C      +++F 
Sbjct: 441 PAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFN 500

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           EM   GC PD      L+S        ++  +L+RTM ++
Sbjct: 501 EMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN 540



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 1/157 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSML 116
           A ++F ++K     PT  ++  ++    + G+  K   + N+M   G   PDT   ++++
Sbjct: 178 ALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALI 237

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +G+LG+ +    +   M++         Y  ++ IY + G +EK  GL Q +  K   
Sbjct: 238 AAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCA 297

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             V T+T  +    +         IF  M+  GC PD
Sbjct: 298 LTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPD 334



 Score = 40.8 bits (94), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 86/199 (43%), Gaps = 2/199 (1%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           KR        ++M L+    + G + +    I +M +S        ++ ++ + G+    
Sbjct: 116 KRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMV 175

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTS 184
            K   +   ++        +TYN +I +  + G  EK+  L+  +  +    PD VT+++
Sbjct: 176 NKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSA 235

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
            +AA+ +       + +F+EM + G +P       ++       ++E+   LV+ M K+ 
Sbjct: 236 LIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEM-KEK 294

Query: 245 KTALPIYFNLYGEKGVARS 263
             AL +Y      KGV ++
Sbjct: 295 GCALTVYTYTELIKGVGKA 313


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 93/192 (48%), Gaps = 1/192 (0%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E+M + G T  + ++  +++   + GNV     +++ M   G KPD    N++L     
Sbjct: 326 LEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCS 385

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
             ++E  EE++  M +     D ST+N +I+ + + G I +   +F+ +P K   P+  T
Sbjct: 386 ADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTT 445

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +++ +   ++     + LE+  EM + G   D    +VL  + + ED+IE+V  +V  + 
Sbjct: 446 YSTIIGGLTKAGKMEQALELLNEMANKGFNTD-KMYRVLTESLNKEDKIEEVVQVVHKLQ 504

Query: 242 KDMKTALPIYFN 253
               +   + +N
Sbjct: 505 DSGISPQTVLYN 516



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 88/199 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  V   M       +  +H  L+ A  + G VA    V++ M   G  PD    N 
Sbjct: 144 LEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNI 203

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    +   + +  E++  M       +  TYN++I+   R G +++   L  SLP++ 
Sbjct: 204 LLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRG 263

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+ V + + L  +   + +    EI +EM+   C P+  T  V+I+    +  +++VT
Sbjct: 264 CKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVT 323

Query: 235 TLVRTMHKDMKTALPIYFN 253
             +  M K   TA  + +N
Sbjct: 324 LYLEKMSKHGCTANVVTYN 342



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 91/199 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  + + M+  G  P   ++ +++ A  + G+V +   ++N +   G KP+T   N+
Sbjct: 214 YRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNT 273

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  +  + ++   +E+L  M + +   + +T N++IN   R G ++K+    + +    
Sbjct: 274 VLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHG 333

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              +VVT+ + ++    +      LE+   M   GC PD  T   ++    S D+ E   
Sbjct: 334 CTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAE 393

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M ++ +      FN
Sbjct: 394 ELMIKMSQNDRLPDNSTFN 412



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/218 (18%), Positives = 84/218 (38%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +   +   G  P   ++  +L  +         + ++++M +    P+   +N ++N
Sbjct: 252 ARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIIN 311

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G  +K+   L  M K    A++ TYN +I+     G ++    L  ++ +   KP
Sbjct: 312 TLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKP 371

Query: 178 DVVTWTSRLAA-----------------------------------YSRKKLYRRCLEIF 202
           D+VT+ + L                                     + +K L  +  E+F
Sbjct: 372 DIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVF 431

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++M + GC P+  T   +I   +   ++EQ   L+  M
Sbjct: 432 KQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEM 469



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%)

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ Y R G  E    V+  M     A+    +N LI+     G +     +   +  +
Sbjct: 133 ALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCR 192

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDVVT+   L A  + + YR+ LE+ + M   GC P+  T  V+I A   E  ++Q 
Sbjct: 193 GCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQA 252

Query: 234 TTLVRTM 240
             L+ ++
Sbjct: 253 RELLNSL 259



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 1/167 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + DA  +  +M +    P   +   +++ + + G + +   V  QM + G  P++   ++
Sbjct: 389 WEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYST 448

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    + G+ E+  E+L  M    +  D   Y +L     +   IE++  +   L    
Sbjct: 449 IIGGLTKAGKMEQALELLNEMANKGFNTD-KMYRVLTESLNKEDKIEEVVQVVHKLQDSG 507

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           + P  V + + L    R       +++  +M+  GC PD  T  +LI
Sbjct: 508 ISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILI 554


>gi|297723401|ref|NP_001174064.1| Os04g0583150 [Oryza sativa Japonica Group]
 gi|38346804|emb|CAE04154.2| OSJNBa0088A01.11 [Oryza sativa Japonica Group]
 gi|125591406|gb|EAZ31756.1| hypothetical protein OsJ_15910 [Oryza sativa Japonica Group]
 gi|215686818|dbj|BAG89668.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255675722|dbj|BAH92792.1| Os04g0583150 [Oryza sativa Japonica Group]
          Length = 606

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 93/181 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            ++++  LG  P   ++  ++  Y + G   + E V ++M   G         +M+++YG
Sbjct: 387 AYDKLIALGCEPGQVTYASVINVYCQLGRSDRAESVFSEMIDRGFDKCVVAYGNMISMYG 446

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           ++ +      +L  M+K     +I  YN L++++GR G   + E +++ +  ++++PD +
Sbjct: 447 KISRASDAMRLLAVMKKKGCEPNIWVYNSLLDMHGRLGNSRQAEKIWKEMMRRKIQPDRI 506

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++T+ + A++R     RC+++++E  + G   D   A +++   S   +  ++  L++ M
Sbjct: 507 SYTAIINAFNRSGELDRCMDLYQEFRETGGKVDTALAGLMVGVFSKCSRFNELIELLKDM 566

Query: 241 H 241
            
Sbjct: 567 Q 567



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 71/148 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +VF EM   G    + ++  +++ Y K    +    ++  M K G +P+ +V NS+L+
Sbjct: 419 AESVFSEMIDRGFDKCVVAYGNMISMYGKISRASDAMRLLAVMKKKGCEPNIWVYNSLLD 478

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++GRLG   + E++   M +     D  +Y  +IN + R G +++   L+Q       K 
Sbjct: 479 MHGRLGNSRQAEKIWKEMMRRKIQPDRISYTAIINAFNRSGELDRCMDLYQEFRETGGKV 538

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           D       +  +S+   +   +E+ ++M
Sbjct: 539 DTALAGLMVGVFSKCSRFNELIELLKDM 566



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/120 (18%), Positives = 55/120 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  +   MK+ G  P +  +  LL  + + GN  + E +  +M +  ++PD     ++
Sbjct: 452 SDAMRLLAVMKKKGCEPNIWVYNSLLDMHGRLGNSRQAEKIWKEMMRRKIQPDRISYTAI 511

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + R G+ ++  ++     +     D +   +++ ++ +     ++  L + +   RL
Sbjct: 512 INAFNRSGELDRCMDLYQEFRETGGKVDTALAGLMVGVFSKCSRFNELIELLKDMQGTRL 571



 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 6/157 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPDTFVIN 113
           SDA     EM+  GI P    +  ++ + +     +  E + N+  K G    PD F+  
Sbjct: 277 SDALKCLREMEADGIAPNATIYSSIIRSLADAHESSAAEDLYNEAWKKGRLGDPDMFL-- 334

Query: 114 SMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            ++ ++   G+ EK+  V   M E G    D     I+     R G    +   +  L A
Sbjct: 335 KVIVMHVEAGRVEKIMGVAKDMRETGLRVTDCILSTIVNGFVKRRGLKPAIRA-YDKLIA 393

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
              +P  VT+ S +  Y +     R   +F EMID G
Sbjct: 394 LGCEPGQVTYASVINVYCQLGRSDRAESVFSEMIDRG 430



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 60/139 (43%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +H+    PD   +N++     R  Q+  +E ++          +  T   L+    +   
Sbjct: 108 LHQPEFLPDKKTMNALTVQLLRAKQWSSLEFLVEDFRAYGVMPERRTCARLVASCVKARK 167

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
               + +   L  KR  P  V ++S + AY++  +YR  L ++E M  A    D    + 
Sbjct: 168 FGLADMVLGVLEGKRGAPAAVAFSSAMQAYNKLHMYRSTLLVYERMRAARLSRDADAYRA 227

Query: 220 LISACSSEDQIEQVTTLVR 238
           +++AC +  + E V +L++
Sbjct: 228 VMAACGALGKPEMVASLLK 246


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 92/178 (51%), Gaps = 8/178 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y ++A  +F+E+        + S   +++ Y +T N  +   +   M K+ +KPD   + 
Sbjct: 146 YINNARKLFDEIS----VKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMV 201

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++   + G  E   ++ + +E   + ++I   N+LI++Y + G +E   GLFQ L   
Sbjct: 202 TVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLA-- 259

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
             K DV++W + +  ++   LY+  L +F+EM+ +G  P+  T   ++ AC+    I+
Sbjct: 260 --KKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAID 315



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 12/177 (6%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M  LG+ P   S   LL + +K+  + + + +   + K G   D +V  S++++Y + G+
Sbjct: 56  MISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGR 115

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            E   +V    ++ S+   +S Y  LI  Y   G+I     LF  +  K    DVV+W +
Sbjct: 116 LEDAHKVF---DRSSHRHVVS-YTALITGYASRGYINNARKLFDEISVK----DVVSWNA 167

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            ++ Y     ++  LE++++M+     PD  T   ++SAC+    IE    L R +H
Sbjct: 168 MISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIE----LGRQLH 220



 Score = 43.9 bits (102), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV---LTAMEKGSYAADISTYNILIN 152
           +  +M +SG  P+   + S+L     LG  +    +   +    KG   A  S    LI+
Sbjct: 285 LFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNAS-SLLTSLID 343

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           +Y + G IE  + +F S+  + L     +W + +  ++         ++F +M   G  P
Sbjct: 344 MYAKCGDIEAAKQVFDSMLTRSLS----SWNAMIFGFAMHGKANAAFDLFSKMRKNGIDP 399

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
           D  T   L+SACS    ++    + R+M +D K
Sbjct: 400 DDITFVGLLSACSHSGMLDLGRHIFRSMSQDYK 432



 Score = 41.6 bits (96), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF+ M    +T ++ S   ++  ++  G       + ++M K+G+ PD      +L+
Sbjct: 354 AKQVFDSM----LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLS 409

Query: 118 LYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                G  +    +  +M +       +  Y  +I++ G  G  ++ + + +++P   ++
Sbjct: 410 ACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMP---ME 466

Query: 177 PDVVTWTSRLAA 188
           PD V W S L A
Sbjct: 467 PDGVIWCSLLKA 478


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 91/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  E++R GI P + ++  L++A S+  N+ +   V N M     +PD +  N+M++
Sbjct: 310 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 369

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR G   +   +   +E   +  D  TYN L+  + R G ++K++ + + +       
Sbjct: 370 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 429

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y ++  +    +++ +M  +G  PD  T  VLI +    + I++   ++
Sbjct: 430 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 489

Query: 238 RTM 240
             M
Sbjct: 490 SEM 492



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 42   HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
            H  N+F         +   +++ MK  G  PTM  + +++   +K   V   E ++++M 
Sbjct: 896  HAGNIF---------EVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEME 946

Query: 102  KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
             +  KPD  + NS+L LY  +G F+K  +V   +++     D  TYN LI +Y R    E
Sbjct: 947  VAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPE 1006

Query: 162  KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +   L   +    L+P + T+ S ++A+ + ++  +  E+FE ++   C  D
Sbjct: 1007 EGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLD 1058



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 119/277 (42%), Gaps = 29/277 (10%)

Query: 2   KKPQCTTCDLCVA---------QRA--PHSW-NFNYLPYPSHFMLINFLLLQHTPNLFVF 49
           +K Q T  D C           QRA   + W N  +   P+  ML   L +    N    
Sbjct: 179 RKVQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEAL 238

Query: 50  IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
              I F+ A A            T++ +  ++  Y++TG   K + +++ M   G +PD 
Sbjct: 239 AVEI-FARAEA--------AXGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDL 289

Query: 110 FVINSMLNLYGRLGQF--EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
              N+++N   + G        E+L  + +     DI TYN LI+   R   +E+   ++
Sbjct: 290 VSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVY 349

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             + A R +PD+ T+ + ++ Y R  + R    +F+++   G  PD  T   L+ A + E
Sbjct: 350 NDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFARE 409

Query: 228 DQIEQVTTLVRTM-----HKDMKTALPIYFNLYGEKG 259
             +++V  +   M      KD  T   I  ++YG++G
Sbjct: 410 GNVDKVKEICEDMVKMGFGKDEMTYNTI-IHMYGKRG 445



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 86/188 (45%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +  A A+F  M R G +PT+ S   L+ A    G + +   VI ++   G K     I  
Sbjct: 830  YERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITL 889

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ML+ +   G   +++++   M+   Y   +  Y I+I +  +G  +  +E +   +    
Sbjct: 890  MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAX 949

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             KPD+  W S L  Y+    +++  ++++ + +AG  PD  T   LI     + + E+  
Sbjct: 950  FKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGL 1009

Query: 235  TLVRTMHK 242
            +L+  M +
Sbjct: 1010 SLMHEMRR 1017



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 90/177 (50%), Gaps = 7/177 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y       +A  +F++++  G  P   ++  LL A+++ GNV K + +
Sbjct: 359 PDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEI 418

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M K G   D    N+++++YG+ GQ +   ++ + M+    + D  TY +LI+  G+
Sbjct: 419 CEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGK 478

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
              I++   +   +    +KP + T+++ +  Y++        E F+ M+ +G  PD
Sbjct: 479 ANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPD 535



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 84/182 (46%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              + + V +E++ +G   +  S  L+L A++  GN+ + + +   M  +G  P   +   
Sbjct: 865  LDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRI 924

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            M+ L  +  +   +E +++ ME   +  D+S +N ++ +Y   G  +K   ++Q +    
Sbjct: 925  MIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAG 984

Query: 175  LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            LKPD  T+ + +  Y R +     L +  EM   G  P   T K LISA      +EQ  
Sbjct: 985  LKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAE 1044

Query: 235  TL 236
             L
Sbjct: 1045 EL 1046



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V+ +M      P + ++  +++ Y + G   +   +   +   G  PD    NS
Sbjct: 342 LEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNS 401

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + R G  +K++E+   M K  +  D  TYN +I++YG+ G  +    L+  +    
Sbjct: 402 LLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSG 461

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
             PD VT+T  + +  +  + +   E+  EM++A   P   T   LI
Sbjct: 462 RSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALI 508



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 1/191 (0%)

Query: 60   AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            ++  EM+R+G+ P + ++  L++A+ K   V + E +   +     K D    + M+ ++
Sbjct: 1010 SLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMF 1069

Query: 120  GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               G   K E++L  M++      I+T ++L+  Y   G  E+ E +  +L  + L    
Sbjct: 1070 RNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLST 1129

Query: 180  VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            + ++S + AY +   +   ++   EM   G  PD       + A S      +   L++ 
Sbjct: 1130 LPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKA 1189

Query: 240  MHKDMKTALPI 250
            + +D    LPI
Sbjct: 1190 L-RDTGFDLPI 1199



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 83/184 (45%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            D  A+  EM+     P +     +L  Y+  G+  K   V   + ++GLKPD    N+++
Sbjct: 937  DVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLI 996

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +Y R  + E+   ++  M +      + TY  LI+ +G+   +E+ E LF+ L +K  K
Sbjct: 997  LMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECK 1056

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             D   +   +  +     + +  ++   M +AG  P   T  +L+ + S   Q E+   +
Sbjct: 1057 LDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKV 1116

Query: 237  VRTM 240
            +  +
Sbjct: 1117 LDNL 1120



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           P+  ++ ++L++ G+  Q E +   + A  + +    +  YN ++ +Y R G   K++ L
Sbjct: 218 PNARMLATILSVLGKANQ-EALAVEIFARAEAAXGNTVQVYNAMMGVYARTGRFTKVQEL 276

Query: 167 FQSLPAKRLKPDVVTWTSRLAAY--SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
              + ++  +PD+V++ + + A   S   +    +E+  E+  +G  PD  T   LISAC
Sbjct: 277 LDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISAC 336

Query: 225 SSEDQIEQVTTLVRTM--HK---DMKTALPIYFNLYGEKGVAR 262
           S E  +E+   +   M  H+   D+ T   +  ++YG  G++R
Sbjct: 337 SRESNLEEAVKVYNDMVAHRCQPDLWTYNAM-ISVYGRCGMSR 378



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 91  AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT-AMEKGSYAADISTYNI 149
           A+   + + M   G++P   +  SM+  Y ++G  E    ++  A EKG    D+S +  
Sbjct: 725 AEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTG 784

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +I  YG+    +K E L  SL  K    D   W + + AY+    Y R   IF  M+  G
Sbjct: 785 VIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDG 844

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM-----KTALPIYFNLYGEKG 259
             P   +   L+ A   + +++++  +++ + +DM     K+++ +  + +   G
Sbjct: 845 PSPTVDSVNGLMQALIVDGRLDELYVVIQEL-QDMGFKISKSSITLMLDAFAHAG 898



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 50/100 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  EM    + PT+++   L+  Y+K G   + E   + M +SG+KPD    + ML
Sbjct: 484 EAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVML 543

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++  R  +  K  ++   M   S+  D + Y +++ + G+
Sbjct: 544 DILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 583



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 63/136 (46%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            F     V++ ++  G+ P   ++  L+  Y +     +   ++++M + GL+P      S
Sbjct: 970  FKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKS 1029

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +++ +G+L   E+ EE+   +       D S Y+I++ ++   G   K E L   +    
Sbjct: 1030 LISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAG 1089

Query: 175  LKPDVVTWTSRLAAYS 190
            ++P + T    + +YS
Sbjct: 1090 VEPTIATMHLLMVSYS 1105



 Score = 43.9 bits (102), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 57/121 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ +MK  G +P   ++ +L+ +  K   + +   V+++M  + +KP     ++++ 
Sbjct: 450 AFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALIC 509

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+  + EE    M +     D   Y+++++I  R     K   L+Q +     KP
Sbjct: 510 GYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKP 569

Query: 178 D 178
           D
Sbjct: 570 D 570



 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 44/96 (45%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            S A  +   MK  G+ PT+ +  LL+ +YS +G   + E V++ +   GL   T   +S+
Sbjct: 1076 SKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSV 1135

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
            ++ Y + G      + L  M+K     D   +   +
Sbjct: 1136 IDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFV 1171


>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
          Length = 608

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 44/253 (17%)

Query: 34  LINFLLLQHTPNL----FVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAY 84
           ++ +L  QH  N     F+ + + Y     FS A  V + M + G  P++ S   L+ AY
Sbjct: 128 ILEWLRTQHWWNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAY 187

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM---EKGSYA 141
            +     K E V  +M  SG +P       +L  +    ++++ E +   +   ++ S+ 
Sbjct: 188 GRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFK 247

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAK---------------------------- 173
            D   ++++I +Y + G   +   LF  +  +                            
Sbjct: 248 PDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETDYKEVSNIYDQ 307

Query: 174 ----RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
                LKPDVV+++  + AY + +     L +FEEM+DAG  P   +  +LI A +    
Sbjct: 308 MQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGL 367

Query: 230 IEQVTTLVRTMHK 242
           +E+  T+ + M +
Sbjct: 368 VEEAHTVFKAMRR 380



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 76/163 (46%)

Query: 51  FSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
           F   + +   ++++M+R  + P + S+ LL+ AY K     +   V  +M  +G++P   
Sbjct: 294 FETDYKEVSNIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRK 353

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             N +++ +   G  E+   V  AM +     D+ +Y  ++  Y     ++  E  F+ +
Sbjct: 354 SYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRI 413

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
               LKP+VV + + +  YS+     R + ++E M   G  P+
Sbjct: 414 KEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPN 456



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 16/218 (7%)

Query: 34  LINFLLLQHTPNLFVFIFSIY-------FSDAHAVFEEMKRLGI---TPTMKSHMLLLTA 83
           L+N       P+  +F   IY       ++ A  +F +M   GI   T T  S M   T 
Sbjct: 238 LLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETD 297

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
           Y +  N+       +QM ++ LKPD    + ++  YG+  + E+   V   M        
Sbjct: 298 YKEVSNI------YDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPT 351

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
             +YNILI+ +   G +E+   +F+++   R++PD+ ++T+ + AY          + F 
Sbjct: 352 RKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFR 411

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            + + G  P+      L+   S  + +E+V  +   M 
Sbjct: 412 RIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMR 449



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 90/182 (49%), Gaps = 2/182 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A AVFEEM   G+ PT KS+ +L+ A++ +G V +   V   M +  ++PD     +M+
Sbjct: 335 EALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMV 394

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y      +  E+    +++     ++  Y  L+  Y +   +E++  +++ +  + ++
Sbjct: 395 LAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVE 454

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSEDQIEQVTT 235
           P+   +T+ +  + R   +   +  F+EM +A  YP    AK +L+S   + ++ E+   
Sbjct: 455 PNQTIYTTIMDVHGRNSDFGNAVIWFKEM-EARGYPADKKAKNILLSLAKTPEEQEEANE 513

Query: 236 LV 237
           L 
Sbjct: 514 LT 515



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 45  NLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
           N+ +  F+I     +AH VF+ M+R  + P + S+  ++ AY    ++   E    ++ +
Sbjct: 356 NILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKE 415

Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            GLKP+  V  +++  Y +L   E++  V   M       + + Y  +++++GR
Sbjct: 416 DGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGR 469



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 53/115 (46%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L  +T  +  ++ +     A   F  +K  G+ P +  +  L+  YSK  NV +   V  
Sbjct: 387 LCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYE 446

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
           +M   G++P+  +  ++++++GR   F         ME   Y AD    NIL+++
Sbjct: 447 RMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILLSL 501


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 95/183 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++  ++K  G++P++ ++ +L++ + + G+ +    ++ +M + G+KP       +++
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILID 416

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R    E   ++ ++ME+     D+ TY++LI+ +   G + +   LF+S+  K L+P
Sbjct: 417 TFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEP 476

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + V + + +  Y ++    R L +F +M +    P+  +   LI     E ++++   LV
Sbjct: 477 NEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLV 536

Query: 238 RTM 240
             M
Sbjct: 537 EKM 539



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 92/197 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+EM+  G++  + ++  L+    +     +   V++QM    + P+    N+++
Sbjct: 286 DAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLI 345

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + +  +G+  K   +   ++    +  + TYN+L++ + R G       + + +  + +K
Sbjct: 346 DGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIK 405

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P  VT+T  +  ++R       +++   M + G  PD  T  VLI     + Q+ + + L
Sbjct: 406 PSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 237 VRTMHKDMKTALPIYFN 253
            ++M + M     + +N
Sbjct: 466 FKSMVEKMLEPNEVIYN 482



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 84/182 (46%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++E+M+  G+ P + ++  ++    K G       V ++M + G+  +    N+++    
Sbjct: 255 MYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R  +  +  +V+  M+      ++ TYN LI+ +   G + K   L + L ++ L P +V
Sbjct: 315 REMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLV 374

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   ++ + RK       ++ +EM + G  P   T  +LI   +  D +E    L  +M
Sbjct: 375 TYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSM 434

Query: 241 HK 242
            +
Sbjct: 435 EE 436



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/197 (17%), Positives = 87/197 (44%), Gaps = 2/197 (1%)

Query: 45  NLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103
           NL  F+  S  F+     F E K + +   + S  +++    + G + K   ++ ++ + 
Sbjct: 134 NLLTFVVGSSSFNQWWCFFNESK-IKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREF 192

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G  P+  +  ++++   + G+ EK +++   M K    A+  TY +LI+   + G  ++ 
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQG 252

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             +++ +    + P++ T+   +    +    +   ++F+EM + G   +  T   LI  
Sbjct: 253 FEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG 312

Query: 224 CSSEDQIEQVTTLVRTM 240
              E +  +   ++  M
Sbjct: 313 LCREMKANEANKVMDQM 329



 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/177 (17%), Positives = 78/177 (44%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           E++  G +P +  +  L+    K G + K + +  +M K GL  + +    +++   + G
Sbjct: 188 ELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG 247

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             ++  E+   M++     ++ TYN ++N   + G  +    +F  +  + +  ++VT+ 
Sbjct: 248 IKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYN 307

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + +    R+       ++ ++M      P+  T   LI    S  ++ +  +L R +
Sbjct: 308 TLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDL 364


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 99/206 (48%), Gaps = 4/206 (1%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           L +T  +  F       DA  + ++M +    P + ++ ++++A  K   + +  GV+ +
Sbjct: 324 LTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQK 383

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M ++G +P+ +  N+++     + + E+  E++T ME+G    +I TY IL +   +   
Sbjct: 384 MRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRR 443

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +++ + +F    A+ LKP+ VT+ + L  Y R       ++I +EM    C PD  T   
Sbjct: 444 LDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTT 503

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMK 245
           LI      +Q+         MH +M+
Sbjct: 504 LIQGLVQGNQLPDAL----RMHDEME 525



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 2/168 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTM--KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           F ++   F  MK +G  P +   ++  +L +  K   +   E +  QM  +G+  +    
Sbjct: 267 FKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTY 326

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            SM+  +    + E   ++L  M + +YA D+ TY I+I+   +   IE+  G+ Q +  
Sbjct: 327 TSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRE 386

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
              +P++ T+ + +      +     LE+   M   G  P+  T  +L
Sbjct: 387 NGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTIL 434



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 4/191 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP---DTFV 111
           F++  ++ ++M+  G   T       + +Y ++G   +     N M + G +P   DT  
Sbjct: 232 FTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDT-A 290

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            NS+L    +  + +  E +   M     + +  TY  +I  +     +E    L   + 
Sbjct: 291 YNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMI 350

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
                PDVVT+T  ++A  ++K+  +   + ++M + GC P+  T   LI    +  + E
Sbjct: 351 QNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPE 410

Query: 232 QVTTLVRTMHK 242
           +   LV  M +
Sbjct: 411 EALELVTLMEQ 421



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/180 (18%), Positives = 82/180 (45%), Gaps = 2/180 (1%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           K+ G      ++  ++    +     + + ++ +M   G +    +++S +  YGR G+F
Sbjct: 208 KQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRF 267

Query: 126 EKMEEVLTAMEKGSYAADI--STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           ++  E    M++  Y   +  + YN ++    +   ++  E LF  +    +  + +T+T
Sbjct: 268 KESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYT 327

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           S +  +  K+     +++ ++MI     PD  T  ++ISA      IEQ   +++ M ++
Sbjct: 328 SMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMREN 387



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/183 (18%), Positives = 73/183 (39%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + +EM +   TP   ++  L+    +   +     + ++M   G   +   +N + 
Sbjct: 481 EAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILA 540

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R+G  +        M+   +A   S Y + I+     G +E+ + L   +  K   
Sbjct: 541 RGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYS 600

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P++ T+ + +  + R+        +   MI+ G  PD G+  +LI    ++ + +    L
Sbjct: 601 PNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQL 660

Query: 237 VRT 239
             T
Sbjct: 661 YAT 663


>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
          Length = 630

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 3/187 (1%)

Query: 57  DAHAVFEEMKRL---GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +A A    M+R+   GI P + ++  ++    K G V     V  +M   GL P  FV +
Sbjct: 281 EARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFS 340

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++  + + G+ ++   V   M       ++  Y+ +I+ + R G + + E LF+ +   
Sbjct: 341 AVITGFCKSGEVDRALMVWETMVAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDA 400

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           +  P++VT++S +  Y       R L  +EEMI  GC P   +  +LIS      +++  
Sbjct: 401 KCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSILISGLCDVGRLKDA 460

Query: 234 TTLVRTM 240
             + + M
Sbjct: 461 MMVWKNM 467



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 75/156 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  M+  G T T  ++ +LL      G       ++ +M   G+ P      ++++
Sbjct: 250 AVKLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVD 309

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ E   +V   M     A     ++ +I  + + G +++   +++++ A R+KP
Sbjct: 310 GLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKP 369

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +VV +++ +  ++R        ++FEEM+DA C P+
Sbjct: 370 NVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPN 405



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 1/174 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S   ++A  +FEEM      P + ++  ++  Y    N ++      +M K G  P 
Sbjct: 381 FARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPT 440

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               + +++    +G+ +    V   M     A D   Y  ++      G ++    LF 
Sbjct: 441 AISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLRLFN 500

Query: 169 SLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            + AK   KPDV+++   L A  R     R +++  +M+D  C PD  T  + +
Sbjct: 501 DMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQMLDQMCDPDTITCNIFL 554



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 3/159 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A + +EEM ++G  PT  S+ +L++     G +     V   M   G  PDT    SM
Sbjct: 423 SRALSTWEEMIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSM 482

Query: 116 LNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +      G  +    +   M  KG    D+ +YN+L++   R   + +   L   +  + 
Sbjct: 483 MKGLCMSGMVDGGLRLFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQMLDQM 542

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             PD +T    L  +    L  +  E  E ++   CY D
Sbjct: 543 CDPDTITCNIFLREFG--VLEGKGREFLEGLVMRLCYRD 579



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/235 (19%), Positives = 92/235 (39%), Gaps = 36/235 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V +EM   G+ P+      ++T + K+G V +   V   M  + +KP+  + ++M+
Sbjct: 319 DAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPNVVLYSAMI 378

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYN---------------------------- 148
           + + R G+  + E++   M       +I TY+                            
Sbjct: 379 DGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCV 438

Query: 149 -------ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
                  ILI+     G ++    +++++  +   PD + +TS +       +    L +
Sbjct: 439 PTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLRL 498

Query: 202 FEEMIDAG-CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
           F +M+  G   PD  +  VL+ A    + + +   L+  M   M     I  N++
Sbjct: 499 FNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQMLDQMCDPDTITCNIF 553


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 92/187 (49%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      ++E+   G   ++    +L+  + K G +   + V + + K GL+P     N
Sbjct: 116 YFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFN 175

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y +LG  ++   + +AM       D+ TY+ILIN   + G +++   LF  +   
Sbjct: 176 TLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDN 235

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + + +     +EI+++M+  G  PD  T   LI     + +++QV
Sbjct: 236 GLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQV 295

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 296 HDLIDEM 302



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 89/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +VF+ + + G+ P++ S   L+  Y K G++ +   + + MH SG +PD +  + ++N
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILIN 214

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  E+   M       +  T+  LI+ + +   ++    +++ + ++ L P
Sbjct: 215 GLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSP 274

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++T+ + +    +K   ++  ++ +EMI  G  PD  +   LI     E  +E    L 
Sbjct: 275 DLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELR 334

Query: 238 RTM 240
             M
Sbjct: 335 NKM 337



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 84/189 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A+ +F EM   G+ P   +   L+  + K   V     +  QM   GL PD    N+
Sbjct: 222 LDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNT 281

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    + G+ +++ +++  M       D  +Y  LI+   + G +E    L   +  + 
Sbjct: 282 LIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQES 341

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ D V +T+ ++   R+       ++  EM+  G  PD GT  ++I+    +   +  +
Sbjct: 342 IRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTAS 401

Query: 235 TLVRTMHKD 243
            L+R M +D
Sbjct: 402 KLLREMQRD 410



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 73/155 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M   G++P + ++  L+    K G + +   +I++M  +GLKPD     ++++
Sbjct: 260 AMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLID 319

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  E   E+   M + S   D   Y  LI+   R G     E + + + +  LKP
Sbjct: 320 GSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKP 379

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           D  T+T  +  + +K+  +   ++  EM   G  P
Sbjct: 380 DNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVP 414


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 92/176 (52%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P ++++ +L++     G   + E +  +M   G+ PDT   +SM+N   +  + ++ 
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            ++  +M   S++ +I T+N LI  Y + G ++    LF  +  + +  + +T+ + +  
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRG 417

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
           + +       L+IF+EMI +G YPD  T + +++   S++++++   ++  +   M
Sbjct: 418 FRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEELQMSM 473



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 89/189 (47%), Gaps = 1/189 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSM 115
           +A A+ + M   G+ P   ++  ++    K G+      ++ +M + S +KPD  + +++
Sbjct: 99  EAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAI 158

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+    + +   M+      DI TY+ +IN +   G   + + L Q +  +++
Sbjct: 159 IDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKI 218

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDVVT++  + A  ++       ++ +EMI +G  P+  T   L+       +++    
Sbjct: 219 SPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALE 278

Query: 236 LVRTMHKDM 244
           + + M K M
Sbjct: 279 MFKAMQKSM 287



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 13/187 (6%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S  +S+A  + +EM    I+P + +   L+ A  K G++   + ++ +M  SG+ P+
Sbjct: 197 FCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPN 256

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----------SYAADISTYNILIN-IYGR 156
               N++L+     G+ +   E+  AM+K                D+ TYNILI+ +   
Sbjct: 257 VVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINE 316

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           G F+E  E L++ +P + + PD VT++S +    ++       ++F+ M      P+  T
Sbjct: 317 GKFLEA-EELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVT 375

Query: 217 AKVLISA 223
              LI+ 
Sbjct: 376 FNTLITG 382



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/196 (18%), Positives = 88/196 (44%), Gaps = 11/196 (5%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  +F EM+  GI P + ++  ++  +  +G  ++ + ++ +M    + PD    + +
Sbjct: 169 TDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGL 228

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   + G     +++L  M       ++ T N L++     G ++    +F+++    +
Sbjct: 229 INALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMM 288

Query: 176 -----------KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
                      +PDV T+   ++    +  +    E++EEM   G  PD  T   +I+  
Sbjct: 289 DIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL 348

Query: 225 SSEDQIEQVTTLVRTM 240
             + ++++ T +  +M
Sbjct: 349 CKQSRLDEATQMFDSM 364


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 84/166 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A + F++M   G++P++ ++ +++   ++ G++     +  +M   GL+PD    NS+++
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLID 294

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YG++G       V   M+      D+ TYN LIN + +   I +       +  + L+P
Sbjct: 295 GYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQP 354

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +VVT+++ + A+ +  +     + F +MI  G  P+  T   LI A
Sbjct: 355 NVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDA 400



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++FEEMK  G+ P + ++  L+  Y K G +     V  +M  +G +PD    NS++N
Sbjct: 270 ARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLIN 329

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  +  +  E L  M++     ++ TY+ LI+ + + G + +    F  +    L+P
Sbjct: 330 CFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQP 389

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T+TS + A  +        ++  EM  AG   +  T   L+     + ++ +   L 
Sbjct: 390 NEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELF 449

Query: 238 RTMHK 242
             + K
Sbjct: 450 GALLK 454



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 35/188 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F +M +  + P ++S   LL   SK+            M  +GL P  F    
Sbjct: 197 LEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVF---- 252

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
                                          TYN++I    R G +E    LF+ + AK 
Sbjct: 253 -------------------------------TYNMVIGCLAREGDLEAARSLFEEMKAKG 281

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+PD+VT+ S +  Y +  +    + +FEEM DAGC PD  T   LI+     ++I Q  
Sbjct: 282 LRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAF 341

Query: 235 TLVRTMHK 242
             +  M +
Sbjct: 342 EYLHGMKQ 349



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 86/185 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A+  F +M R+G+ P   ++  L+ A  K G++ +   + ++M ++G+  +     ++L
Sbjct: 374 EANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALL 433

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +     G+  + EE+  A+ K  +  +   Y  L + Y +   +EK   + + +  K LK
Sbjct: 434 DGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLK 493

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD++ + +++    R+      + +  EM+D G   +      LI A     +  +   L
Sbjct: 494 PDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNL 553

Query: 237 VRTMH 241
           ++ M 
Sbjct: 554 LQEMQ 558



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 94/219 (42%), Gaps = 7/219 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + EEM +  + P +  +   +    +   +     VI +M   GL  ++++  ++++
Sbjct: 480 AMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLID 539

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++G+  +   +L  M+       + TY +LI+   + G +++    F  +    L+P
Sbjct: 540 AYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQP 599

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +++ +T+ +    +         +F EM+D G  PD      LI          +  +L 
Sbjct: 600 NIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLR 659

Query: 238 -RTMHKDMKTALPIY------FNLYGEKGVARSNLGQYI 269
            R +   M+  L  Y      F+ YG+  +A+S L + +
Sbjct: 660 NRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEML 698



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 35/221 (15%)

Query: 55  FSDAHAVFEEMKRL-----------------------------------GITPTMKSHML 79
            + A +VFEEMK                                     G+ P + ++  
Sbjct: 302 LTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYST 361

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ A+ K G + +       M + GL+P+ F   S+++   ++G   +  ++ + M++  
Sbjct: 362 LIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAG 421

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              +I TY  L++     G + + E LF +L       +   +TS    Y + K+  + +
Sbjct: 422 VNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAM 481

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +I EEM      PD       I     +++IE    ++R M
Sbjct: 482 DILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREM 522



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 75/184 (40%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D+ AV  EM   G+T     +  L+ AY K G   +   ++ +M   G+K        ++
Sbjct: 514 DSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLI 573

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   ++G  ++       M +     +I  Y  LI+   +   +E+ + LF  +  K + 
Sbjct: 574 DGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGIS 633

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD + +TS +    +       L +   M++ G   D      LI   S   Q++   +L
Sbjct: 634 PDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSL 693

Query: 237 VRTM 240
           +  M
Sbjct: 694 LDEM 697



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 73/184 (39%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  + + G T   + +  L   Y K   + K   ++ +M+K  LKPD  +  + +
Sbjct: 444 EAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKI 503

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  + E    V+  M      A+   Y  LI+ Y + G   +   L Q +    +K
Sbjct: 504 WGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIK 563

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             VVT+   +    +  L ++ +  F+ M   G  P+      LI      D +E+   L
Sbjct: 564 ITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNL 623

Query: 237 VRTM 240
              M
Sbjct: 624 FNEM 627



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 73/158 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  + +EM+ LGI  T+ ++ +L+    K G V +     + M ++GL+P+  +  ++
Sbjct: 548 TEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTAL 607

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   +    E+ + +   M     + D   Y  LI+   + G   +   L   +    +
Sbjct: 608 IDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGM 667

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           + D+  +TS +  +SR    +    + +EM+  G  PD
Sbjct: 668 ELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPD 705



 Score = 37.0 bits (84), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 58/144 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EM   GI+P    +  L+    K GN  +   + N+M + G++ D     S
Sbjct: 617 LEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTS 676

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R GQ +  + +L  M +     D      L+  Y   G I +   L   +  + 
Sbjct: 677 LIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRG 736

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRC 198
           L    +  T      +  KL++ C
Sbjct: 737 LISGTIDITVPSCLTAVTKLHKLC 760


>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 426

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   V  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVENKKFLEALSVFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ PDT   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 85/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y + G   + + +   M K G++P+    N+
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   L Q +  + 
Sbjct: 190 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG 249

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 250 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + PD  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L +F EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F+EM   G +PD     ++++A
Sbjct: 376 EVFDEMRGLGYFPDSNVIALVLNA 399



 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEM------------------------------- 205
            D+  +   +  +S+ K Y   +E+F+EM                               
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDEMRGLGYFPDSNVIALVLNAYGKLHEFDKANDV 412

Query: 206 ----IDAGC 210
                + GC
Sbjct: 413 YMEMQEVGC 421


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  VF++MK  GI P + ++ +++ A  + G +++   V   M  SG  P+    N+
Sbjct: 271 ISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN 330

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ ++ + G+ EK+ +V   M+K     D  TYN LI  + R   +E    +  ++  K+
Sbjct: 331 LMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKK 390

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            + +  T+ +      +K+       ++ +M++A C P+  T  +L+   +      + T
Sbjct: 391 CEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAG----SKST 446

Query: 235 TLVRTMHKDM 244
            +V  M KDM
Sbjct: 447 DMVLKMKKDM 456



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 86/187 (45%), Gaps = 1/187 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A   F  M+  G  P   +  ++++  S+    ++ +   + + K   +PD  V  ++
Sbjct: 203 SEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNL 261

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  + R G+  + E+V   M+      ++ TY+I+I+   R G I +   +F  +     
Sbjct: 262 VRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGC 321

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ +T+ + +  + +     + L+++ +M   GC PD  T   LI     ++ +E    
Sbjct: 322 APNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVK 381

Query: 236 LVRTMHK 242
           ++ TM K
Sbjct: 382 VLNTMIK 388



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 7/186 (3%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN++ +   I         S AH VF +M   G  P   +   L+  + K G   K   V
Sbjct: 288 PNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQV 347

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            NQM K G +PDT   N ++  + R    E   +VL  M K     + ST+N +     +
Sbjct: 348 YNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEK 407

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +     ++  +   + +P+ VT+   +  ++  K     L++ ++M D    P+  T
Sbjct: 408 KRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNT 467

Query: 217 AKVLIS 222
            ++L++
Sbjct: 468 YRLLVT 473



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 86/188 (45%), Gaps = 1/188 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  + + MK   +  ++++  +L+  Y + G  ++     N+M   G  PD    + 
Sbjct: 167 FDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSI 226

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R  +  + +    ++ K  +  D+  Y  L+  + R G I + E +F+ +    
Sbjct: 227 VISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAG 285

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+V T++  + A  R     R  ++F +M+D+GC P+  T   L+       + E+V 
Sbjct: 286 IEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVL 345

Query: 235 TLVRTMHK 242
            +   M K
Sbjct: 346 QVYNQMKK 353



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 75/161 (46%), Gaps = 1/161 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A + F+ +K     P +  +  L+  + + G +++ E V   M  +G++P+ +  + +
Sbjct: 238 SEAQSFFDSLKD-RFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIV 296

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   R GQ  +  +V   M     A +  T+N L+ ++ + G  EK+  ++  +     
Sbjct: 297 IDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGC 356

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           +PD +T+   +  + R +     +++   MI   C  +  T
Sbjct: 357 EPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNAST 397



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/181 (17%), Positives = 79/181 (43%), Gaps = 1/181 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ +MK+LG  P   ++  L+  + +  N+     V+N M K   + +    N++     
Sbjct: 347 VYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIE 406

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +         + + M +     +  TYNIL+ ++      + +  + + +  K ++P+V 
Sbjct: 407 KKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVN 466

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSEDQIEQVTTLVRT 239
           T+   +  +     +    ++F+EM++  C  P     +++++      Q+++   LV  
Sbjct: 467 TYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEK 526

Query: 240 M 240
           M
Sbjct: 527 M 527



 Score = 42.0 bits (97), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 36/155 (23%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-------IEKME- 164
           N M++L G++ QF+    ++  M+  +    I T+ ILI  Y R G          +ME 
Sbjct: 155 NEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMED 214

Query: 165 ---------------------------GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                                        F SL   R +PDV+ +T+ +  + R      
Sbjct: 215 YGCVPDQIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEISE 273

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             ++F++M  AG  P+  T  ++I A     QI +
Sbjct: 274 AEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISR 308



 Score = 38.1 bits (87), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/108 (21%), Positives = 48/108 (44%)

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           YN +I++ G+    +    L   + ++ ++  + T+T  +  Y R  L    +  F  M 
Sbjct: 154 YNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           D GC PD     ++IS  S + +  +  +   ++    +  + +Y NL
Sbjct: 214 DYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNL 261


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 1/165 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A A+FE +K    TP ++++ +LL  + K  N+ +   V N+M   G KPD    N ML
Sbjct: 216 EAQALFENLKGR-FTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIML 274

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R  Q     ++   M+    + D+ +Y ILI    R   +E+    FQ +     K
Sbjct: 275 EGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCK 334

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           PD   +T  +  +  +K      ++ +EM + GC PDG T   LI
Sbjct: 335 PDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALI 379



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 97/218 (44%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ H   L   + S   SDA  +F  MK  G +P ++S+ +L+    +   + +      
Sbjct: 267 IVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQ 326

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M  SG KPD  V   ++  +G   + + + ++L  M++     D  TYN LI +  R  
Sbjct: 327 EMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRLK 386

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             +    +++ +    ++P + T+   + +Y + + Y     +++EM   G  PD  +  
Sbjct: 387 MPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYT 446

Query: 219 VLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYG 256
           VLI    S+ +  +    +  M +    A  + +N +G
Sbjct: 447 VLIGGLISQGRSGEACKYLEEMLEKGMKAPQLDYNKFG 484



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 37/224 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F    ++ EEM   G+  TM +  + + A++      K   +   M K   K     IN 
Sbjct: 145 FETVVSMLEEMGGKGVL-TMDTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGVETINH 203

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR-----------GGFIEK- 162
           +L+  GR  +  K  + L    KG +  ++ TY +L+N + +              I+K 
Sbjct: 204 LLDSLGR-AKLGKEAQALFENLKGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKG 262

Query: 163 -----------MEGLFQS------------LPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                      +EGL +S            + AK   PDV ++T  +    R+      +
Sbjct: 263 FKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAV 322

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           E F+EMID+GC PD      LI+   +  +++ V  L++ M ++
Sbjct: 323 EYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEE 366



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 35/147 (23%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEK----MEE-----VLTA----------------- 134
            K G + D+   NSM+++  +  QFE     +EE     VLT                  
Sbjct: 121 EKQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERK 180

Query: 135 --------MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186
                   M+K +Y   + T N L++  GR    ++ + LF++L   R  P++ T+T  L
Sbjct: 181 KAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKG-RFTPNLRTYTVLL 239

Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             + + K       ++ EMID G  PD
Sbjct: 240 NGWCKVKNLMEAGSVWNEMIDKGFKPD 266


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 92/176 (52%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P ++++ +L++     G   + E +  +M   G+ PDT   +SM+N   +  + ++ 
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            ++  +M   S++ +I T+N LI  Y + G ++    LF  +  + +  + +T+ + +  
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRG 417

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
           + +       L+IF+EMI +G YPD  T + +++   S++++++   ++  +   M
Sbjct: 418 FRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEELQMSM 473



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 89/189 (47%), Gaps = 1/189 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSM 115
           +A A+ + M   G+ P   ++  ++    K G+      ++ +M + S +KPD  + +++
Sbjct: 99  EAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAI 158

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+    + +   M+      DI TY+ +IN +   G   + + L Q +  +++
Sbjct: 159 IDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKI 218

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDVVT++  + A  ++       ++ +EMI +G  P+  T   L+       +++    
Sbjct: 219 SPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALE 278

Query: 236 LVRTMHKDM 244
           + + M K M
Sbjct: 279 MFKAMQKSM 287



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 13/187 (6%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S  +S+A  + +EM    I+P + +   L+ A  K G++   + ++ +M  SG+ P+
Sbjct: 197 FCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPN 256

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----------SYAADISTYNILIN-IYGR 156
               N++L+     G+ +   E+  AM+K                D+ TYNILI+ +   
Sbjct: 257 VVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINE 316

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           G F+E  E L++ +P + + PD VT++S +    ++       ++F+ M      P+  T
Sbjct: 317 GKFLEA-EELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVT 375

Query: 217 AKVLISA 223
              LI+ 
Sbjct: 376 FNTLITG 382



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/196 (18%), Positives = 88/196 (44%), Gaps = 11/196 (5%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +DA  +F EM+  GI P + ++  ++  +  +G  ++ + ++ +M    + PD    + +
Sbjct: 169 TDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGL 228

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   + G     +++L  M       ++ T N L++     G ++    +F+++    +
Sbjct: 229 INALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMM 288

Query: 176 -----------KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
                      +PDV T+   ++    +  +    E++EEM   G  PD  T   +I+  
Sbjct: 289 DIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL 348

Query: 225 SSEDQIEQVTTLVRTM 240
             + ++++ T +  +M
Sbjct: 349 CKQSRLDEATQMFDSM 364


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 2/191 (1%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M R G  P   +   L+  +SK G    CE ++  M    ++P+    N +L    +L +
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 125 FEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           + + EE++  M    G    D+ TY+ L++ Y + G +E+   L + + ++ L+PD + +
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           T  +A+  +       LE+ EEMI AGC P   T   LIS C  E  +E   +L++ M  
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAA 180

Query: 243 DMKTALPIYFN 253
               A  + +N
Sbjct: 181 SGVKADVVTYN 191



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           TP M ++  LL+ Y K G V +   ++ ++   GL+PD  +   ++    +  +  +  E
Sbjct: 79  TPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALE 138

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +L  M +      + T+N LI+   R   +E  + L Q + A  +K DVVT+ + +    
Sbjct: 139 LLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLC 198

Query: 191 RKKLYRRCLEIFEEMIDAGCYPD 213
           +    +   ++ E M  +GC PD
Sbjct: 199 KAGRLQEAEQLLERMKASGCAPD 221



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 5/140 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM- 115
           +A +V E M R G  P + ++  L+    K G + +    + +M   G KP+     S+ 
Sbjct: 311 EARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLV 370

Query: 116 --LNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILINIYGRGGFIEKMEGLFQSLP 171
             L   GRL + E+M E +++   G +     +STYN LI    + G I+     FQ + 
Sbjct: 371 HGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMR 430

Query: 172 AKRLKPDVVTWTSRLAAYSR 191
           ++   PD V++++ +   +R
Sbjct: 431 SQGCDPDGVSYSTIVEGLAR 450



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 84/212 (39%), Gaps = 36/212 (16%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M R G  PT+ +   L++   +  N+   + ++ +M  SG+K D    N++++   + G+
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGR 202

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
            ++ E++L  M+    A D+  Y+  +    + G +     + + +      P+VVT+ +
Sbjct: 203 LQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNT 262

Query: 185 RLAAYSRKKLYRRCLEIFEEM----------------ID--------------------A 208
            L    +       LE+ E+M                +D                    A
Sbjct: 263 ILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARA 322

Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           GC PD  T   L++      +IE+    VR M
Sbjct: 323 GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREM 354



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 49  FIFSIYFS----DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS- 103
           F++ +  S    DAH V E+M+     P + ++  +L    K+G +     ++ QM  S 
Sbjct: 228 FVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSD 287

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
           G   +    +++++   +LG+ ++   V+ AM +     D+ TY+ L+N   + G IE+ 
Sbjct: 288 GCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEA 347

Query: 164 EGLFQSLPAKRLKPDVVTWTS 184
               + +  +  KP+ VT+ S
Sbjct: 348 VEAVREMAMEGCKPNAVTYCS 368


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 1/195 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A  +EM    I P   +   L+  + K  NVA  +    +M K GLKP+    NS++N
Sbjct: 257 AEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLIN 316

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ E+  ++   M       +I TYN LIN + +   +++   +F  +  + L P
Sbjct: 317 GLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVP 376

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+T+ + + AY ++ +      +   M+D G  P+  T   LI+    +  ++    L+
Sbjct: 377 NVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELL 436

Query: 238 RTM-HKDMKTALPIY 251
             M +K +K  +  Y
Sbjct: 437 NEMENKGLKGDVVTY 451



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 91/189 (48%), Gaps = 3/189 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK---CEGVINQMHKSGLKPDTFV 111
            + A    E+MK  GI+P + ++  L+  Y K G+  K    E  + +M  + + P+   
Sbjct: 216 LNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVT 275

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N++++ + +       ++    M+K     +I TYN LIN     G +E+   L+  + 
Sbjct: 276 FNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMV 335

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              LKP++VT+ + +  + +KK+ +   ++F+++      P+  T   +I A   E  +E
Sbjct: 336 GLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMME 395

Query: 232 QVTTLVRTM 240
           +  +L  +M
Sbjct: 396 EGFSLCSSM 404



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 86/183 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   FEEM++ G+ P + ++  L+      G + +   + ++M   GLKP+    N+++N
Sbjct: 292 AKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALIN 351

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +    ++  +V   + K     ++ T+N +I+ Y + G +E+   L  S+  + + P
Sbjct: 352 GFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILP 411

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V T+   +A   RK+  +   E+  EM + G   D  T  +LI      D+      L+
Sbjct: 412 NVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLL 471

Query: 238 RTM 240
             M
Sbjct: 472 NEM 474



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 90/200 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  ++++M  LG+ P + ++  L+  + K   + +   V + + K  L P+    N+
Sbjct: 324 LEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNT 383

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ Y + G  E+   + ++M       ++STYN LI    R   ++  + L   +  K 
Sbjct: 384 MIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKG 443

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LK DVVT+   +    +    R   ++  EM + G  P+  T   L+     E +++   
Sbjct: 444 LKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAAL 503

Query: 235 TLVRTMHKDMKTALPIYFNL 254
            +   M K+ K    + +N+
Sbjct: 504 NVRTRMEKERKQPNVVTYNV 523



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 90/214 (42%), Gaps = 3/214 (1%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102
            P L   +      D   V++EM +  I   + +  + +    + G + K E  I  M  
Sbjct: 169 NPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKA 228

Query: 103 SGLKPDTFVINSMLNLY---GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
            G+ P+    N++++ Y   G  G+  K E  +  M       +  T+N LI+ + +   
Sbjct: 229 WGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDEN 288

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +   +  F+ +  + LKP++VT+ S +            ++++++M+  G  P+  T   
Sbjct: 289 VAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNA 348

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           LI+    +  +++ T +   + K       I FN
Sbjct: 349 LINGFCKKKMMKEATKVFDDVSKQELVPNVITFN 382



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM+  G+   + ++ +L+    K       E ++N+M   GLKP+    N++++
Sbjct: 432 AKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMD 491

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G+ +    V T MEK     ++ TYN+LI  Y +   +E   GL   +  K L P
Sbjct: 492 GYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNP 551

Query: 178 DVVTW 182
           +  T+
Sbjct: 552 NRTTY 556



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 79/184 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF+++ +  + P + +   ++ AY K G + +   + + M   G+ P+    N ++
Sbjct: 361 EATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLI 420

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               R    +  +E+L  ME      D+ TYNILI+   +       E L   +    LK
Sbjct: 421 AGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLK 480

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT+ + +  Y  +   +  L +   M      P+  T  VLI      +++E    L
Sbjct: 481 PNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGL 540

Query: 237 VRTM 240
           +  M
Sbjct: 541 LNEM 544



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 74/166 (44%), Gaps = 4/166 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS   ++ +E    GI P + ++  L+    +  ++   + ++N+M   GLK D    N 
Sbjct: 398 FSLCSSMLDE----GILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNI 453

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   +  +    E++L  M       +  TYN L++ Y   G ++    +   +  +R
Sbjct: 454 LIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKER 513

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            +P+VVT+   +  Y +         +  EM++ G  P+  T  ++
Sbjct: 514 KQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 9/189 (4%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H++  +  R G T  +    +L+ AY K   +        +    G K      N +L+ 
Sbjct: 117 HSLLLDGGRPGATALIID--MLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSA 174

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
             +  +   +E V   M K     +++T+NI IN   R G + K E   + + A  + P+
Sbjct: 175 LVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPN 234

Query: 179 VVTWTSRLAAYSRK----KLYRRCLEIF-EEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           VVT+ + +  Y ++    K+Y+   E F +EM+     P+  T   LI     ++ +   
Sbjct: 235 VVTYNTLVDGYCKRGSAGKMYKA--EAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAA 292

Query: 234 TTLVRTMHK 242
                 M K
Sbjct: 293 KKAFEEMQK 301


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 92/187 (49%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      ++E+   G   ++    +L+  + K G +   + V + + K GL+P     N
Sbjct: 116 YFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFN 175

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y +LG  ++   + +AM       D+ TY+ILIN   + G +++   LF  +   
Sbjct: 176 TLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDN 235

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + + +     +EI+++M+  G  PD  T   LI     + +++QV
Sbjct: 236 GLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQV 295

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 296 HDLIDEM 302



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 89/183 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +VF+ + + G+ P++ S   L+  Y K G++ +   + + MH SG +PD +  + ++N
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILIN 214

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ ++  E+   M       +  T+  LI+ + +   ++    +++ + ++ L P
Sbjct: 215 GLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSP 274

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++T+ + +    +K   ++  ++ +EMI  G  PD  +   LI     E  +E    L 
Sbjct: 275 DLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELR 334

Query: 238 RTM 240
             M
Sbjct: 335 NKM 337



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 84/189 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A+ +F EM   G+ P   +   L+  + K   V     +  QM   GL PD    N+
Sbjct: 222 LDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNT 281

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    + G+ +++ +++  M       D  +Y  LI+   + G +E    L   +  + 
Sbjct: 282 LIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQES 341

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ D V +T+ ++   R+       ++  EM+  G  PD GT  ++I+    +   +  +
Sbjct: 342 IRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTAS 401

Query: 235 TLVRTMHKD 243
            L+R M +D
Sbjct: 402 KLLREMQRD 410



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 73/155 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M   G++P + ++  L+    K G + +   +I++M  +GLKPD     ++++
Sbjct: 260 AMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLID 319

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  E   E+   M + S   D   Y  LI+   R G     E + + + +  LKP
Sbjct: 320 GSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKP 379

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           D  T+T  +  + +K+  +   ++  EM   G  P
Sbjct: 380 DNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLP 414


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 80/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  + E+MK LGI      +  LL  Y KTG   +   V   M   G++ DT   NS
Sbjct: 180 YDEALKLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNS 239

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N YG+ G+ + +  ++  M     A  + TY+ LI+IY + G       ++       
Sbjct: 240 LINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESG 299

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           LK DVV ++S +   ++  L    L + +EMI  G  P+  T   +I A
Sbjct: 300 LKADVVLFSSFIDTLAKNGLVECALSLLDEMIKMGIKPNVVTYNTIIDA 348



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 7/227 (3%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVI 97
           +  H+  +  +  S   ++A  V E MK  G+ PT  S+  ++ A  K G ++    G  
Sbjct: 23  VFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYF 82

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
            QM + GL PD    NS+L    R G  E    V   M       DI TYN  ++   + 
Sbjct: 83  RQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKC 142

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G +E    +   + A  +KP+VVT+++ +  +S+ + Y   L++ E+M   G   D    
Sbjct: 143 GNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCY 202

Query: 218 KVLISACSSEDQIEQVTTLVRTM-----HKDMKTALPIYFNLYGEKG 259
             L++      + +++ T+   M      KD  T   +  N YG++G
Sbjct: 203 NTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSL-INGYGKQG 248



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 88/185 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M+   I P + ++  L+  +SK     +   +  +M   G++ D    N++L 
Sbjct: 148 ATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYNTLLA 207

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y + G+++++  V   ME      D  TYN LIN YG+ G ++ +  L Q + A+ + P
Sbjct: 208 IYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAP 267

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V+T+++ +  YS+  ++     ++ +  ++G   D       I   +    +E   +L+
Sbjct: 268 SVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLL 327

Query: 238 RTMHK 242
             M K
Sbjct: 328 DEMIK 332



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/239 (18%), Positives = 94/239 (39%), Gaps = 43/239 (17%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +++ +  + +   V E+M+ LGI     ++  L+  Y K G +     ++  M   G+
Sbjct: 206 LAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGV 265

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
            P     ++++++Y + G       V    ++    AD+  ++  I+   + G +E    
Sbjct: 266 APSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALS 325

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLY------------------------------ 195
           L   +    +KP+VVT+ + + A+ + K+                               
Sbjct: 326 LLDEMIKMGIKPNVVTYNTIIDAFGKSKILTEEDPGNMGIVGVYGGQIVRATNPVTRGGR 385

Query: 196 -------RRC------LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
                  RR       LE+F++M+  G  P+  T   +++ACS  +  E    L+  + 
Sbjct: 386 SATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFEDAALLLEQLR 444



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL-YRRC 198
           Y   +  ++ LI+ Y R G   +  G+ +S+    L+P  V++ + + A  +  +  R  
Sbjct: 19  YGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFT 78

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           L  F +M+  G  PD  T   L++ACS    +E   T+   M
Sbjct: 79  LGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEM 120


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 89/185 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A++ + EM   GI P + ++  ++ A  K   + K   V+N M K+G+ PD    NS+L+
Sbjct: 220 AYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 279

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ ++    L  M       ++ TY+ L+N   + G   +   +F S+  + L+P
Sbjct: 280 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 339

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + L  Y+ K        + + M+  G  PD     +LI A + +++++Q   + 
Sbjct: 340 DIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVF 399

Query: 238 RTMHK 242
             M +
Sbjct: 400 SKMRQ 404



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 9/190 (4%)

Query: 33  MLINFLLLQH--TPNLF-------VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA 83
           ML+   + QH   PN+        V   S    DA   FE+M   G+TP +  +  L+  
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHG 455

Query: 84  YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                   K E +I +M   G+  +T   NS+++ + + G+  + E++   M +     D
Sbjct: 456 LCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 515

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           I TYN LI+     G +++   L  S+ +  +KPD+VT+ + +  Y R       L +F+
Sbjct: 516 IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFK 575

Query: 204 EMIDAGCYPD 213
           EM+ +G  P+
Sbjct: 576 EMVSSGVSPN 585



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 78/154 (50%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +F+ M + G+ P + ++  LL  Y+  G + +   +++ M ++G++PD  V N +
Sbjct: 323 TEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 382

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y +  + ++   V + M +     ++  Y  +I++  + G ++     F+ +  + L
Sbjct: 383 ICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGL 442

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            P+++ +TS +        + +  E+  EM+D G
Sbjct: 443 TPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRG 476



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 84/197 (42%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    ++M+  G+ P + ++  L+    K G   +   + + M K GL+PD     ++L
Sbjct: 289 EAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLL 348

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y   G   +M  +L  M +     D   +NILI  Y +   +++   +F  +    L 
Sbjct: 349 QGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 408

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VV + + +    +       +  FE+MID G  P+      LI    + D+ ++   L
Sbjct: 409 PNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEEL 468

Query: 237 VRTMHKDMKTALPIYFN 253
           +  M         I+FN
Sbjct: 469 ILEMLDRGICLNTIFFN 485



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 81/177 (45%), Gaps = 4/177 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V   M + G+ P   ++  +L  Y  +G   +  G + +M   G++P+    +S++N
Sbjct: 255 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMN 314

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+  +  ++  +M K     DI+TY  L+  Y   G + +M  L   +    ++P
Sbjct: 315 YLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQP 374

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD----GGTAKVLISACSSEDQI 230
           D   +   + AY++++   + + +F +M   G  P+    G    VL  + S +D +
Sbjct: 375 DHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P + S+  +L  + K G+  K     ++M   G+ PD    +S++    +    +K 
Sbjct: 196 GSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKA 255

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            EVL  M K     D  TYN +++ Y   G  ++  G  + + +  ++P+VVT++S +  
Sbjct: 256 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNY 315

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             +        +IF+ M   G  PD  T + L+   +++  + ++  L+  M ++
Sbjct: 316 LCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN 370



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 81/183 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF +M++ G+ P +  +  ++    K+G+V        QM   GL P+  V  S+++
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 454

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 +++K EE++  M       +   +N +I+ + + G + + E LF  +    +KP
Sbjct: 455 GLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 514

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D++T+ + +             ++   M+  G  PD  T   LI+      +++    L 
Sbjct: 515 DIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALF 574

Query: 238 RTM 240
           + M
Sbjct: 575 KEM 577



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK---GSYAADISTYNILIN 152
           V+ +M + G  PD F  N++L       + ++  E+L  M     G    D+ +YN ++N
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            + + G  +K    +  +  + + PDVVT++S +AA  + +   + +E+   M+  G  P
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP 269

Query: 213 DGGT-AKVLISACSSEDQIEQVTTLVRTMHKD 243
           D  T   +L   CSS    E + TL + M  D
Sbjct: 270 DCMTYNSILHGYCSSGQPKEAIGTL-KKMRSD 300



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+ V+   I+       +  A  +  EM   GI         ++ ++ K G V + E 
Sbjct: 443 TPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 502

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + + M + G+KPD    N++++     G+ ++  ++L +M       DI TY  LIN Y 
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 562

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           R   ++    LF+ + +  + P+++T+
Sbjct: 563 RVSRMDDALALFKEMVSSGVSPNIITY 589



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/211 (17%), Positives = 87/211 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +   M  +G+ P + ++  L+  Y +   +     +  +M  SG+ P+    N 
Sbjct: 532 MDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 591

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L       +    +E+  ++ K     ++STYNI+++   +    ++   +FQ+L    
Sbjct: 592 ILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 651

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+ +  T+   + A  +        ++F      G  PD  T  ++      +  +E++ 
Sbjct: 652 LQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELD 711

Query: 235 TLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            L  +M ++  +A     N    K + R ++
Sbjct: 712 DLFLSMEENGCSADSRMLNSIVRKLLQRGDI 742


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 90/189 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      +EE+   G   ++    +L+  + K G++   + V + + K GL+P     N
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYN 181

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + +AM       D+ TY++LIN   +   ++  + LF  +  K
Sbjct: 182 TLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVK 241

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + +       +EI+++M+     PD  T   LI     +  ++Q 
Sbjct: 242 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 234 TTLVRTMHK 242
             L+  M +
Sbjct: 302 HDLIDDMSR 310



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           YP+     N L+ +   +  + +       A +VF+ + + G+ P+  S+  L+  Y + 
Sbjct: 138 YPASLYFFNILMHRFCKDGDIRV-------AQSVFDAITKWGLRPSAVSYNTLMNGYIRL 190

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G + +   + + M  SG++PD +  + ++N   +  + +  +E+   M       +  T+
Sbjct: 191 GVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTF 250

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
             LI+ + + G ++    +++ + ++ L PD++T+ + +    +K   ++  ++ ++M  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSR 310

Query: 208 AGCYPDGGTAKVLISACSSEDQIE 231
            G  PD  T   LI  C  E  ++
Sbjct: 311 KGLKPDKITYTTLIDGCCKEGDLD 334



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 88/199 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA  +F+EM   G+ P   +   L+  + K G V     +  QM    L PD    N++
Sbjct: 229 DDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G  ++  +++  M +     D  TY  LI+   + G ++      + +  + +
Sbjct: 289 IYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENI 348

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D V +T+ ++   ++       ++  EM+  G  PD GT  ++I+    +  + + + 
Sbjct: 349 RLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSK 408

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L++ M +D      + +N+
Sbjct: 409 LLKEMQRDGHVPSVVTYNV 427



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 74/166 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M    + P + ++  L+    K G++ +   +I+ M + GLKPD     ++++
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLID 325

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  +   E    M + +   D   Y  LI+   + G     E + + + +  L P
Sbjct: 326 GCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNP 385

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D  T+T  +  + +K    +  ++ +EM   G  P   T  VL++ 
Sbjct: 386 DTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PNL  F  + ++Y       +A +++  M   GI P +  + +L+    + G + +   
Sbjct: 272 SPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNS 331

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + +     G+K D  + +S+++ Y R+G   K  EV T M K   + ++ TY+ILIN   
Sbjct: 332 LFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLC 391

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R G + +  G+F  +  + L+P V+T++S +  + + +  R    ++  M+  G  PD  
Sbjct: 392 RNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVV 451

Query: 216 TAKVLISACSSEDQIEQ 232
              +LI+  S +  +++
Sbjct: 452 VCSMLINGLSRQGMMDE 468



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A A+F ++ + G +P    +  L+  + K  + A    +   M  +G+ PD  + N 
Sbjct: 536 LDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNV 595

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N++ R G  E + E+L  + K     DI TYN +I  Y       K   LF+ L   R
Sbjct: 596 LINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGR 655

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +P+ +T+T  + AY +       + IF  M++ G  P+  T   LI      +  E   
Sbjct: 656 TQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAF 715

Query: 235 TLVRTMHKD 243
            L   M  D
Sbjct: 716 ELYEKMLGD 724



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 87/174 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+ M+  GI P +  + +L+  + + G V     ++ ++ K GL+PD    N+M+  Y 
Sbjct: 577 IFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYC 636

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            L  F K  ++   ++ G    +  T+ ILI+ Y + G ++    +F S+  +  +P+++
Sbjct: 637 SLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNIL 696

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           T++  +  Y + +      E++E+M+     P+  +  +LI     +  +E+ +
Sbjct: 697 TYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEAS 750



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 86/187 (45%), Gaps = 1/187 (0%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P +     +L        +       + M +SG  P+    ++++N+Y +  + ++ 
Sbjct: 235 GLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEA 294

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             +   M +     D+  Y+ILIN   R G +E+   LF    A+ +K DVV ++S + A
Sbjct: 295 FSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDA 354

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVRTMHKDMKTA 247
           Y R     + +E++  M+  G  P+  T  +LI+  C +   +E      + + + ++ +
Sbjct: 355 YVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPS 414

Query: 248 LPIYFNL 254
           +  Y +L
Sbjct: 415 VLTYSSL 421



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 82/186 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   ++  M R G  P +    +L+   S+ G + +      Q  K GL  + ++ N+++
Sbjct: 433 DGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALI 492

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   RL +     ++   M       D+ TY +L+      G +++   LF  L  K   
Sbjct: 493 DGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFS 552

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD + + + +  + +K+     L+IF+ M   G +PD     VLI+    E  +E V  L
Sbjct: 553 PDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLEL 612

Query: 237 VRTMHK 242
           +R + K
Sbjct: 613 LREIIK 618



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 74/166 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS A  +FE +K     P   +  +L+ AY K G +     + + M + G +P+    + 
Sbjct: 641 FSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSC 700

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y +    E   E+   M     + +I +Y+ILI+   + G +E+    FQ    + 
Sbjct: 701 LIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRH 760

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           L PDV+ +   +  Y +       + +++ M+  G  PD    K L
Sbjct: 761 LLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKAL 806



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 62/145 (42%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ AY + G++ K   V  +M K G+ P+    + ++N   R G+  +   V   + K  
Sbjct: 351 IMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQG 410

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
               + TY+ LI+ + +   +    GL+  +  K   PDVV  +  +   SR+ +    L
Sbjct: 411 LEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEAL 470

Query: 200 EIFEEMIDAGCYPDGGTAKVLISAC 224
             F + +  G   +      LI  C
Sbjct: 471 RFFFQAVKRGLTLNNYLFNALIDGC 495


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 3/178 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  V + +   G+  T   +  L+  Y + G++     +  QM    ++PD    N+
Sbjct: 344 ISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNA 403

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N  G++ +  +  +++  MEK      + T+N LI+ YGR G +EK   +   +  K 
Sbjct: 404 LINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKG 463

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQ 229
           LKP+VV++ S + A+ +       + I ++M      P       +I A   C S DQ
Sbjct: 464 LKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQ 521



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 89/188 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            ++AH +  EM++ G+ P++++   L+ AY + G + KC  +++ M + GLKP+     S
Sbjct: 414 ITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGS 473

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + + G+  +   +L  M           YN +I+ Y   G  ++   L + + +  
Sbjct: 474 IVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSG 533

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P +VT+   +    ++       E+ + + + G  PD  +   LISAC      ++  
Sbjct: 534 VPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRAL 593

Query: 235 TLVRTMHK 242
            L + M K
Sbjct: 594 ELEKEMWK 601



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 94/214 (43%), Gaps = 12/214 (5%)

Query: 49  FIFSIYFSDAHA----------VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           F +SI F D H+          +FEE  + G+     +  +LL    K G ++K E V+ 
Sbjct: 294 FTYSILF-DGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQ 352

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            +  SGL   T + N+++N Y ++G  E    +   M+      D  TYN LIN  G+  
Sbjct: 353 TLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVE 412

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            I +   L   +    + P V T+ + + AY R     +C  I  +M + G  P+  +  
Sbjct: 413 RITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYG 472

Query: 219 VLISA-CSSEDQIEQVTTLVRTMHKDMKTALPIY 251
            +++A C +   +E V  L     KD+     +Y
Sbjct: 473 SIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVY 506



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 86/184 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F++MK   I P   ++  L+    K   + +   ++ +M K+G+ P     N++++
Sbjct: 382 AFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLID 441

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR GQ EK   +L+ M++     ++ +Y  ++N + + G I +   +   +  K + P
Sbjct: 442 AYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLP 501

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
               + + + AY       +   + E+M  +G  P   T  +LI     + QI +   L+
Sbjct: 502 GAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELL 561

Query: 238 RTMH 241
            ++ 
Sbjct: 562 DSLR 565



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 82/183 (44%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           AV +EM    + P   ++ +L   +S+TG+      +  +  K G+K   +  + +LN  
Sbjct: 279 AVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGL 338

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G+  K EEVL  +           YN LIN Y + G +E    +FQ + ++ ++PD 
Sbjct: 339 CKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDH 398

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           +T+ + +    + +      ++  EM   G  P   T   LI A     Q+E+   ++  
Sbjct: 399 ITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSD 458

Query: 240 MHK 242
           M +
Sbjct: 459 MQE 461



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 10/188 (5%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++ +M R G+ P + ++ +LL+   + G + +   V+++M    + PD F  + + + + 
Sbjct: 245 LWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHS 304

Query: 121 RLGQFEKM-----EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           R G  + M     E V   ++ G+Y     T +IL+N   + G I K E + Q+L    L
Sbjct: 305 RTGDSQTMLSLFEESVKKGVKIGAY-----TCSILLNGLCKDGKISKAEEVLQTLVNSGL 359

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
               V + + +  Y +         IF++M      PD  T   LI+     ++I +   
Sbjct: 360 LQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHD 419

Query: 236 LVRTMHKD 243
           LV  M K+
Sbjct: 420 LVIEMEKN 427



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM    + P   ++  ++  + K G++     + +QM + GLKP+    N +L
Sbjct: 206 DAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLL 265

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   R G+  +   VL  M       D  TY+IL + + R G  + M  LF+    K +K
Sbjct: 266 SGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVK 325

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
               T +  L    +     +  E+ + ++++G
Sbjct: 326 IGAYTCSILLNGLCKDGKISKAEEVLQTLVNSG 358



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 71/152 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E+MK  G+ P++ ++ LL+    K   +++ E +++ +   GL PD    N++++
Sbjct: 522 AFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLIS 581

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                   ++  E+   M K        TY +L +  G  G + +ME L+Q +  K + P
Sbjct: 582 ACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVP 641

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
               +   + AY++     +   + +EM D G
Sbjct: 642 CSGIYNIMVDAYAKCGEESKVEALRKEMSDKG 673



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/180 (18%), Positives = 83/180 (46%), Gaps = 4/180 (2%)

Query: 65  MKRLGI----TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           ++R+G      P   S+ +++    K G       + ++M +  + P+    N+M++ + 
Sbjct: 175 LRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHI 234

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  E    + + M +     ++ TYN+L++   R G + +   +   + ++++ PD  
Sbjct: 235 KKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGF 294

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T++     +SR    +  L +FEE +  G      T  +L++    + +I +   +++T+
Sbjct: 295 TYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTL 354



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 53/119 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  + + ++  G+ P + S+  L++A     N  +   +  +M K G+KP       
Sbjct: 554 ISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRM 613

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           + +  G  G+  +ME +   M           YNI+++ Y + G   K+E L + +  K
Sbjct: 614 LFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDK 672



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 1/154 (0%)

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME-KGSYAADIST 146
           G  A   G    +  +  +PDTF  N  +      G  ++   +L  M   G+ A +  +
Sbjct: 131 GRHADVRGAFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFS 190

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           YN++I    + G       LF  +P K + P+ +T+ + +  + +K        ++ +M+
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQML 250

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             G  P+  T  VL+S      ++ +   ++  M
Sbjct: 251 RHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEM 284


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 72/140 (51%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           + P   ++  L+ A  K G   K E +++ M + G++PD     ++++ YG+ G +E  E
Sbjct: 195 VQPNSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAE 254

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
                M+  + + D+  Y  +I+ YGR G  +K E +F+ +    L+P+ VT+ S + AY
Sbjct: 255 NTFKGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAY 314

Query: 190 SRKKLYRRCLEIFEEMIDAG 209
            +  L      +F  M ++G
Sbjct: 315 GKAGLPEESRNVFNIMRESG 334



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 83/187 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  + + M   G+ P   ++  L+ AY K G     E     M  + +  D     +
Sbjct: 215 YEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTA 274

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++ YGR G ++K EE+   M+      +  TY  L+  YG+ G  E+   +F  +    
Sbjct: 275 MIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESG 334

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            + +V+ ++S + AY +   Y     + + M  AGC P+  T   ++S+C   +   +  
Sbjct: 335 YEGNVLIYSSLIDAYGKAGNYLEAARMLDMMRRAGCQPNLITYSAILSSCCKSNCWVEAQ 394

Query: 235 TLVRTMH 241
            L+R + 
Sbjct: 395 VLLRRLQ 401



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPDTFVINSMLNLYGRLGQ 124
           G  P + ++ +L+ A  K G +     V+  M        ++P++   N+++N  G+ G 
Sbjct: 155 GCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGL 214

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           +EK EE++  M +     D  TY  LI+ YG+ G  E  E  F+ +    +  DV+ +T+
Sbjct: 215 YEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTA 274

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            + AY R+ LY++  E+F+ M  +G  P+  T   L+ A
Sbjct: 275 MIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEA 313



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGF 159
           H   L P  F I  +L    R   +    EV +  +K S Y  +   Y  LI   GR G 
Sbjct: 4   HPKPLSP--FDITCVLTELQRQHDWRCTLEVFSWSKKQSWYCPNSRLYTRLIGFLGREGR 61

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA---GCYPDGGT 216
           +     LFQ +  ++ + D  T+T+ + AY + K++   L +F  M ++    C P+  T
Sbjct: 62  VHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVT 121

Query: 217 AKVLISA 223
              LI A
Sbjct: 122 CNALIDA 128



 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 75/182 (41%), Gaps = 13/182 (7%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P  + +  L+    + G V     +  +M     + D +   +++N YG+   FE+   V
Sbjct: 44  PNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAV 103

Query: 132 LTAMEKGSY---AADISTYNILINIYGRGGFIEKMEGLFQSLP------AKRLKPDVVTW 182
            + M++ +      +  T N LI+   +GG  ++   +F  +           +P+V+T+
Sbjct: 104 FSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITY 163

Query: 183 TSRLAAYSRKKLYRRCLEIFEEM----IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
              + A  ++ L    +++ + M     D    P+  T   LI+AC      E+   LV 
Sbjct: 164 NVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVD 223

Query: 239 TM 240
            M
Sbjct: 224 LM 225


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F D  A+F+ M+  G+     + + +++A ++ G+ +  + ++  +    ++ D ++ N+
Sbjct: 169 FKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNT 228

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +GR GQ +  E+V   M+      +I T N +I  Y +G  I     +F  +P   
Sbjct: 229 LVDYFGRRGQLQSAEKVFFNMK----VRNIVTMNAMIAAYAKGQDIVSARKIFDQIP--- 281

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            K D+++W+S ++ YS+   +   LEIF +M  A   PD      ++S+C+
Sbjct: 282 -KKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCA 331



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++ YS+  + +    +  QM ++ +KPD  VI S+++    LG  +  + V   + + +
Sbjct: 291 MISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNN 350

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
             AD    N LI++Y + G  ++   +F+ +  K    D ++W S +   +     +  L
Sbjct: 351 IKADTIMENSLIDMYMKCGSAKEALQVFKEMKEK----DTLSWNSIIIGLANNGFEKESL 406

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            +F+ M+  G  P+G T   ++ AC++   +E+
Sbjct: 407 NLFQAMLTEGFRPNGVTFLGVLIACANAKLVEE 439



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +FSDA  +F +M+R  + P       ++++ +  G +   + V   + ++ +K DT + N
Sbjct: 300 HFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMEN 359

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++++Y + G  ++  +V   M++     D  ++N +I      GF ++   LFQ++  +
Sbjct: 360 SLIDMYMKCGSAKEALQVFKEMKE----KDTLSWNSIIIGLANNGFEKESLNLFQAMLTE 415

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             +P+ VT+   L A +  KL    L+ FE M
Sbjct: 416 GFRPNGVTFLGVLIACANAKLVEEGLDHFESM 447



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 14/211 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH VF++++     PT     +L+   +++   A       +    G+ PD      +L 
Sbjct: 40  AHKVFDQIE----APTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 95

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R+    + E++   + K    +DI   N LI++Y   G +     +F  +  K    
Sbjct: 96  ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK---- 151

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV+W S +  YS+   ++  L +F+ M + G   D  T   ++SAC+          +V
Sbjct: 152 DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMV 211

Query: 238 RTMHKDMKTALPIYF-----NLYGEKGVARS 263
           R + +D    + +Y      + +G +G  +S
Sbjct: 212 RYI-EDYCIEVDVYLGNTLVDYFGRRGQLQS 241


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 102/236 (43%), Gaps = 42/236 (17%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN  +F   I        FS+A  +F EM R G+ PT+  +  L+    ++GN  +   +
Sbjct: 289 PNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALAL 348

Query: 97  INQMHKSGLKPDTFVI-----------------------------------NSMLNLYGR 121
             +M + GL PD F                                     N++++ Y R
Sbjct: 349 YQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCR 408

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           +G  E+     T M +     ++ +Y+ LI+ + + G ++    ++  + AK ++P+VVT
Sbjct: 409 IGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVT 468

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +T+ +  +++         + +EMI+ G  P+  T  VL+     E+++++    V
Sbjct: 469 YTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFV 524



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM R G+ P++ ++  L+ A    G VAK + V +QM    + P+     +M+ 
Sbjct: 170 AWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMIC 229

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G     E +  AM++     +  TYN+L++ + +   +     L+Q L    L P
Sbjct: 230 ALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNP 289

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
           + V +T+ +  + + K +     +F EM   G  P
Sbjct: 290 NAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAP 324



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 63/129 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F+ MK  G+ P   ++ +L++ + +  +V     +  ++ KSGL P+  +  +
Sbjct: 237 IGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTT 296

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + +  +F + + +   M +   A  +  YN L++   R G  ++   L+Q +    
Sbjct: 297 LIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLG 356

Query: 175 LKPDVVTWT 183
           L PD  T +
Sbjct: 357 LCPDEFTCS 365



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 53/113 (46%)

Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
           E+   M +      + TYN LIN     G + K + ++  + A+++ P+VVT+T+ + A 
Sbjct: 172 ELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICAL 231

Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             +        +F+ M +AG  P+  T  VL+S     D +     L + + K
Sbjct: 232 CEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLK 284



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 10/230 (4%)

Query: 43  TPNLFVFIFSI----YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
            P L V + ++       +A  VF  ++ L   P   + +  L    + G   +   + +
Sbjct: 119 APALGVLVIALSQMGLLDEALYVFRRLRTLPALPACNAVLDGLVKARRPGCAWE---LFD 175

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M + GL P     N+++N     G   K +EV   M       ++ TY  +I      G
Sbjct: 176 EMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEG 235

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
            I   E LF ++    ++P+  T+   ++ + ++      + +++E++ +G  P+     
Sbjct: 236 CIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFT 295

Query: 219 VLISACSSEDQIEQVTTLVRTMHK-DMKTALPIYFNLYGEKGVARSNLGQ 267
            LI       +  +   +   M +  +   +P+Y +L    G  RS   Q
Sbjct: 296 TLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLM--DGAFRSGNAQ 343


>gi|125549468|gb|EAY95290.1| hypothetical protein OsI_17116 [Oryza sativa Indica Group]
          Length = 608

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 93/181 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            ++++  LG  P   ++  ++  Y + G   + E V ++M   G         +M+++YG
Sbjct: 389 AYDKLIALGCEPGQVTYASVINVYCQLGRSDRAESVFSEMIDRGFDKCVVAYGNMISMYG 448

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           ++ +      +L  M+K     +I  YN L++++GR G   + E +++ +  ++++PD +
Sbjct: 449 KISRASDAMRLLAVMKKKGCEPNIWVYNSLLDMHGRLGNSRQAEKIWKEMMRRKIQPDRI 508

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++T+ + A++R     RC+++++E  + G   D   A +++   S   +  ++  L++ M
Sbjct: 509 SYTAIINAFNRSGELDRCMDLYQEFRETGGKVDTALAGLMVGVFSKCSRFNELIELLKDM 568

Query: 241 H 241
            
Sbjct: 569 Q 569



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 71/148 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +VF EM   G    + ++  +++ Y K    +    ++  M K G +P+ +V NS+L+
Sbjct: 421 AESVFSEMIDRGFDKCVVAYGNMISMYGKISRASDAMRLLAVMKKKGCEPNIWVYNSLLD 480

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           ++GRLG   + E++   M +     D  +Y  +IN + R G +++   L+Q       K 
Sbjct: 481 MHGRLGNSRQAEKIWKEMMRRKIQPDRISYTAIINAFNRSGELDRCMDLYQEFRETGGKV 540

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           D       +  +S+   +   +E+ ++M
Sbjct: 541 DTALAGLMVGVFSKCSRFNELIELLKDM 568



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/120 (18%), Positives = 55/120 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  +   MK+ G  P +  +  LL  + + GN  + E +  +M +  ++PD     ++
Sbjct: 454 SDAMRLLAVMKKKGCEPNIWVYNSLLDMHGRLGNSRQAEKIWKEMMRRKIQPDRISYTAI 513

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + R G+ ++  ++     +     D +   +++ ++ +     ++  L + +   RL
Sbjct: 514 INAFNRSGELDRCMDLYQEFRETGGKVDTALAGLMVGVFSKCSRFNELIELLKDMQGTRL 573



 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 6/157 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPDTFVIN 113
           SDA     EM+  GI P    +  ++ + +     +  E + N+  K G+   PD F+  
Sbjct: 279 SDALKCLREMEADGIAPNATIYSSIIRSLADAHESSAAEDLYNEAWKKGMLGDPDMFL-- 336

Query: 114 SMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            ++ ++   G+ EK   V   M E G    D     I+     R G    +   +  L A
Sbjct: 337 KVIVMHVEAGRVEKTMGVAKDMRETGLRVTDCILSTIVNGFVKRRGLKPAIRA-YDKLIA 395

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
              +P  VT+ S +  Y +     R   +F EMID G
Sbjct: 396 LGCEPGQVTYASVINVYCQLGRSDRAESVFSEMIDRG 432



 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 60/139 (43%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           +H+    PD   +N++     R  Q+  +E ++          +  T   L+    +   
Sbjct: 110 LHQPEFLPDKKTMNALTVQLLRAKQWSSLEFLVEDFRAYGVMPERRTCARLVASCVKARK 169

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
               + +   L  KR  P  V ++S + AY++  +YR  L ++E M  A    D    + 
Sbjct: 170 FGLADMVLGVLEGKRGAPAAVAFSSAMQAYNKLHMYRSTLLVYERMRAARLSRDADAYRA 229

Query: 220 LISACSSEDQIEQVTTLVR 238
           +++AC +  + E V +L++
Sbjct: 230 VMAACGALGKPEMVASLLK 248


>gi|357116849|ref|XP_003560189.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Brachypodium distachyon]
          Length = 737

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 103/237 (43%), Gaps = 46/237 (19%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F  MK  GI PT  S+  LL AY+  G   K       M K  LKP      ++L+
Sbjct: 479 AEDAFLRMKADGIKPTSSSYTSLLCAYAVNGQYEKAHITYVDMKKERLKPSLETYTALLD 538

Query: 118 LYGRLGQFEKMEEVLTAM--EK------------------GSY--AADI----------- 144
           ++ R G  +K+ E   +M  EK                  G Y  A D+           
Sbjct: 539 IFRRAGDTDKLMETWRSMINEKVGGTRVTFHMVLDGLAKYGLYVQARDVIYEFGNIGLPP 598

Query: 145 --STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
              TYNIL+N Y +GG   K+  L + + A  LKPD VT+++ + AY+R + + +     
Sbjct: 599 TTMTYNILMNTYAKGGQHYKLPQLLKEMSALELKPDSVTYSTMIYAYARVRDFSKAFYYH 658

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKG 259
           ++M+ +G  PD  + K L++           T  V++  K++K    I   + G+ G
Sbjct: 659 KQMVRSGQVPDAKSYKKLLN-----------TLDVKSARKNIKDKSAIVGVIKGKSG 704



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 4/163 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EMK  G+ PT+ ++ +L+ AYS+       E ++ +MH  GL+P+    N 
Sbjct: 405 IEEAEGLFVEMKEKGLKPTIVTYNILMDAYSRRLQPEVVESLLLEMHDLGLQPNARSYNC 464

Query: 115 MLNLYGRLGQF-EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++ YGR  +  EK E+    M+        S+Y  L+  Y   G  EK    +  +  +
Sbjct: 465 LISAYGRQKKMSEKAEDAFLRMKADGIKPTSSSYTSLLCAYAVNGQYEKAHITYVDMKKE 524

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           RLKP + T+T+ L  + R     + +E +  MI+      GGT
Sbjct: 525 RLKPSLETYTALLDIFRRAGDTDKLMETWRSMINEKV---GGT 564



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 1/179 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE-GVINQMHKSGLKPDTFVIN 113
           + DA  +FE M++  + P   +  ++L    K    AK       +M++ G+K    V  
Sbjct: 299 YDDAWTIFEFMEKNSVQPDHITSSIMLNVMKKQKVSAKAAWEFFQRMNRKGVKWSLDVSA 358

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++ ++   G  ++   + + ME+    ++ S YN ++N Y +   IE+ EGLF  +  K
Sbjct: 359 SLIKMFCDEGLKKEALIIQSEMERRGIPSNTSIYNEIVNAYCKCSQIEEAEGLFVEMKEK 418

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            LKP +VT+   + AYSR+        +  EM D G  P+  +   LISA   + ++ +
Sbjct: 419 GLKPTIVTYNILMDAYSRRLQPEVVESLLLEMHDLGLQPNARSYNCLISAYGRQKKMSE 477



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +  EM+R GI      +  ++ AY K   + + EG+  +M + GLKP     N ++
Sbjct: 372 EALIIQSEMERRGIPSNTSIYNEIVNAYCKCSQIEEAEGLFVEMKEKGLKPTIVTYNILM 431

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI-EKMEGLFQSLPAKRL 175
           + Y R  Q E +E +L  M       +  +YN LI+ YGR   + EK E  F  + A  +
Sbjct: 432 DAYSRRLQPEVVESLLLEMHDLGLQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKADGI 491

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KP   ++TS L AY+    Y +    + +M      P   T   L+         +++  
Sbjct: 492 KPTSSSYTSLLCAYAVNGQYEKAHITYVDMKKERLKPSLETYTALLDIFRRAGDTDKLME 551

Query: 236 LVRTM 240
             R+M
Sbjct: 552 TWRSM 556



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 1/178 (0%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVA-KCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EM  LG+ P  +S+  L++AY +   ++ K E    +M   G+KP +    S+L  Y   
Sbjct: 449 EMHDLGLQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKADGIKPTSSSYTSLLCAYAVN 508

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           GQ+EK       M+K      + TY  L++I+ R G  +K+   ++S+  +++    VT+
Sbjct: 509 GQYEKAHITYVDMKKERLKPSLETYTALLDIFRRAGDTDKLMETWRSMINEKVGGTRVTF 568

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              L   ++  LY +  ++  E  + G  P   T  +L++  +   Q  ++  L++ M
Sbjct: 569 HMVLDGLAKYGLYVQARDVIYEFGNIGLPPTTMTYNILMNTYAKGGQHYKLPQLLKEM 626


>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 426

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   +  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 80/151 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YXKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   +   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A ++F EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++   G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L IF EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 39/223 (17%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           E+F++M   G +PD     ++++A     + ++   +   M +
Sbjct: 376 EVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQE 418



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 76/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++   G+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 426

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   +  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   +   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A ++F EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L IF EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 83/204 (40%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F +M   G +PD     ++++A
Sbjct: 376 EVFNKMRGLGYFPDSNVIALVLNA 399



 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F                                  
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFNKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 90/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FEEM    I P + ++  L+    K+G ++    ++++MH  G  PD    +S+L+
Sbjct: 308 AMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLD 367

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +    +K   +LT ++      ++ TY ILIN   +GG  E  + +F+ L  K    
Sbjct: 368 ALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNI 427

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V T+T  +  +    ++   L +  +M + GC P+  T +++I +   +D+ ++   L+
Sbjct: 428 NVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDKDENDKAEKLL 487

Query: 238 RTM 240
             M
Sbjct: 488 LEM 490



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%)

Query: 78  MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           M  ++ + K G V + + V   M K G KP+    +S+++ Y  + +  K + +   M +
Sbjct: 223 MAPVSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQ 282

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
           G    DI +YNILIN + +    +    LF+ +  +++ P+VVT+ S +    +      
Sbjct: 283 GGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISY 342

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISA 223
            L++ +EM D G  PD  T   L+ A
Sbjct: 343 ALKLVDEMHDRGQPPDIITYSSLLDA 368



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 74/167 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF  M + G  P + ++  L+  Y     V K + + N M + G+ PD    N ++
Sbjct: 237 EAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILI 296

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + ++   +    +   M       ++ TYN LI+   + G I     L   +  +   
Sbjct: 297 NGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQP 356

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           PD++T++S L A  +     + + +  ++ D G  P+  T  +LI+ 
Sbjct: 357 PDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILING 403



 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 66/152 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM   G  P + ++  LL A  K     K   ++ ++   GL+P+ +    ++N
Sbjct: 343 ALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILIN 402

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+ E  + +   +    Y  +++TY ++I+++   G   +   +   +      P
Sbjct: 403 GLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIP 462

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           + VT+   + +   K    +  ++  EMI  G
Sbjct: 463 NAVTYEIIIRSLFDKDENDKAEKLLLEMITRG 494


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 91/183 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  E++R GI P + ++  L++A S+  N+ +   V N M     +PD +  N+M++
Sbjct: 278 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 337

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +YGR G   +   +   +E   +  D  TYN L+  + R G ++K++ + + +       
Sbjct: 338 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 397

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D +T+ + +  Y ++  +    +++ +M  +G  PD  T  VLI +    + I++   ++
Sbjct: 398 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 457

Query: 238 RTM 240
             M
Sbjct: 458 SEM 460



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 87/188 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A A+F  M R G +PT+ S   L+ A    G + +   VI ++   G K     I  
Sbjct: 798 YERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITL 857

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ML+ +   G   +++++   M+   Y   +  Y I+I +  +G  +  +E +   +   R
Sbjct: 858 MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAR 917

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KPD+  W S L  Y+    +++  ++++ + +AG  PD  T   LI     + + E+  
Sbjct: 918 FKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGL 977

Query: 235 TLVRTMHK 242
           +L+  M +
Sbjct: 978 SLMHEMRR 985



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 91/177 (51%), Gaps = 7/177 (3%)

Query: 44  PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+L+ +  + S+Y       +A  +F++++  G  P   ++  LL A+++ GNV K + +
Sbjct: 327 PDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEI 386

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M K G   D    N+++++YG+ GQ +   ++ + M+    + D  TY +LI+  G+
Sbjct: 387 CEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGK 446

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
              I++   +   +   R+KP + T+++ +  Y++        E F+ M+ +G  PD
Sbjct: 447 ANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPD 503



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 42   HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101
            H  N+F         +   +++ MK  G  PTM  + +++   +K   V   E ++++M 
Sbjct: 864  HAGNIF---------EVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEME 914

Query: 102  KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
             +  KPD  + NS+L LY  +G F+K  +V   +++     D  TYN LI +Y R    E
Sbjct: 915  VARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPE 974

Query: 162  KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +   L   +    L+P + T+ S ++A+ + ++  +  E+FE ++   C  D
Sbjct: 975  EGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLD 1026



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 119/277 (42%), Gaps = 29/277 (10%)

Query: 2   KKPQCTTCDLCVA---------QRA--PHSW-NFNYLPYPSHFMLINFLLLQHTPNLFVF 49
           +K Q T  D C           QRA   + W N  +   P+  ML   L +    N    
Sbjct: 147 RKVQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEAL 206

Query: 50  IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
              I F+ A A            T++ +  ++  Y++TG   K + +++ M   G +PD 
Sbjct: 207 AVEI-FARAEA--------ASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDL 257

Query: 110 FVINSMLNLYGRLGQF--EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
              N+++N   + G        E+L  + +     DI TYN LI+   R   +E+   ++
Sbjct: 258 VSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVY 317

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
             + A R +PD+ T+ + ++ Y R  + R    +F+++   G  PD  T   L+ A + E
Sbjct: 318 NDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFARE 377

Query: 228 DQIEQVTTLVRTM-----HKDMKTALPIYFNLYGEKG 259
             +++V  +   M      KD  T   I  ++YG++G
Sbjct: 378 GNVDKVKEICEDMVKMGFGKDEMTYNTI-IHMYGKRG 413



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%)

Query: 48   VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
              I      + + V +E++ +G   +  S  L+L A++  GN+ + + +   M  +G  P
Sbjct: 826  ALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFP 885

Query: 108  DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
               +   M+ L  +  +   +E +++ ME   +  D+S +N ++ +Y   G  +K   ++
Sbjct: 886  TMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVY 945

Query: 168  QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
            Q +    LKPD  T+ + +  Y R +     L +  EM   G  P   T K LISA    
Sbjct: 946  QLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKL 1005

Query: 228  DQIEQVTTL 236
              +EQ   L
Sbjct: 1006 QMVEQAEEL 1014



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  V+ +M      P + ++  +++ Y + G   +   +   +   G  PD    NS
Sbjct: 310 LEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNS 369

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  + R G  +K++E+   M K  +  D  TYN +I++YG+ G  +    L+  +    
Sbjct: 370 LLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSG 429

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
             PD VT+T  + +  +  + +   E+  EM++A   P   T   LI
Sbjct: 430 RSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALI 476



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 1/191 (0%)

Query: 60   AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            ++  EM+R+G+ P + ++  L++A+ K   V + E +   +     K D    + M+ ++
Sbjct: 978  SLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMF 1037

Query: 120  GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
               G   K E++L  M++      I+T ++L+  Y   G  E+ E +  +L  + L    
Sbjct: 1038 RNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLST 1097

Query: 180  VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            + ++S + AY +   +   ++   EM   G  PD       + A S      +   L++ 
Sbjct: 1098 LPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKA 1157

Query: 240  MHKDMKTALPI 250
            + +D    LPI
Sbjct: 1158 L-RDTGFDLPI 1167



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 83/184 (45%)

Query: 57   DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            D  A+  EM+     P +     +L  Y+  G+  K   V   + ++GLKPD    N+++
Sbjct: 905  DVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLI 964

Query: 117  NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +Y R  + E+   ++  M +      + TY  LI+ +G+   +E+ E LF+ L +K  K
Sbjct: 965  LMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECK 1024

Query: 177  PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             D   +   +  +     + +  ++   M +AG  P   T  +L+ + S   Q E+   +
Sbjct: 1025 LDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKV 1084

Query: 237  VRTM 240
            +  +
Sbjct: 1085 LDNL 1088



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 91  AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT-AMEKGSYAADISTYNI 149
           A+   + + M   G++P   +  SM+  Y ++G  E    ++  A EKG    D+S +  
Sbjct: 693 AEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTG 752

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +I  YG+    +K E L  SL  K    D   W + + AY+    Y R   IF  M+  G
Sbjct: 753 VIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDG 812

Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM-----KTALPIYFNLYGEKG 259
             P   +   L+ A   + +++++  +++ + +DM     K+++ +  + +   G
Sbjct: 813 PSPTVDSVNGLMQALIVDGRLDELYVVIQEL-QDMGFKISKSSITLMLDAFAHAG 866



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 50/100 (50%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  EM    + PT+++   L+  Y+K G   + E   + M +SG+KPD    + ML
Sbjct: 452 EAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVML 511

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++  R  +  K  ++   M   S+  D + Y +++ + G+
Sbjct: 512 DILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 551



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 63/136 (46%)

Query: 55   FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            F     V++ ++  G+ P   ++  L+  Y +     +   ++++M + GL+P      S
Sbjct: 938  FKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKS 997

Query: 115  MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +++ +G+L   E+ EE+   +       D S Y+I++ ++   G   K E L   +    
Sbjct: 998  LISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAG 1057

Query: 175  LKPDVVTWTSRLAAYS 190
            ++P + T    + +YS
Sbjct: 1058 VEPTIATMHLLMVSYS 1073



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 57/121 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ +MK  G +P   ++ +L+ +  K   + +   V+++M  + +KP     ++++ 
Sbjct: 418 AFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALIC 477

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y + G+  + EE    M +     D   Y+++++I  R     K   L+Q +     KP
Sbjct: 478 GYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKP 537

Query: 178 D 178
           D
Sbjct: 538 D 538



 Score = 40.0 bits (92), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 44/96 (45%)

Query: 56   SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            S A  +   MK  G+ PT+ +  LL+ +YS +G   + E V++ +   GL   T   +S+
Sbjct: 1044 SKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSV 1103

Query: 116  LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
            ++ Y + G      + L  M+K     D   +   +
Sbjct: 1104 IDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFV 1139


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 4/125 (3%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           +SGL  D FV N+++++Y + G+ E   +V   M       D+ T+N ++  Y + G  E
Sbjct: 259 RSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMR----FKDVVTWNAMVTGYSQNGRFE 314

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
               LF  +  ++++ DVVTW+S ++ Y+++      +++F +M    C P+  T   L+
Sbjct: 315 DALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLL 374

Query: 222 SACSS 226
           SAC+S
Sbjct: 375 SACAS 379



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F DA ++F +M+   I   + +   +++ Y++ G   +   V  QM     +P+   + S
Sbjct: 313 FEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMS 372

Query: 115 MLNLYGRLGQFEKMEEV-------LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           +L+    +G     +E        +   E      D++  N LI++Y +   +E    +F
Sbjct: 373 LLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMF 432

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM--IDAGCYPDGGTAKVLISACS 225
             +  K    DVVTWT  +  Y++       L++F EM  ID    P+  T   ++ AC+
Sbjct: 433 DEICPK--DRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACA 490



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 58  AHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK--SGLKPDTFVI 112
           A A+F+E+    R  +T T     +++  Y++ G+      + ++M K  + + P+ F I
Sbjct: 428 ARAMFDEICPKDRDVVTWT-----VMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTI 482

Query: 113 NSMLNLYGRLGQFEKMEEVLT-AMEKGSYAADIS-TYNILINIYGRGGFIEKMEGLFQSL 170
           + +L    RL   +  +++    + +    +D+    N LI++Y + G ++  + +F S+
Sbjct: 483 SCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSM 542

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
                K + V+WTS L  Y           +F+EM       DG T  V++ ACS
Sbjct: 543 S----KRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACS 593


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  VF++M   GI+    +   L+    K   +    G+INQM   GL+P+    NS
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNS 536

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  Y + G  +K  ++L  M    +  D+ TY  LIN   + G  +    + + +  K 
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           ++P    +   L +  R+   R  L +F EM + G  PD  T K++
Sbjct: 597 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIV 642



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA    ++    G  P   ++   +    +  +V     V++ M + G  PD F  N +
Sbjct: 268 EDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIV 327

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   + GQ E+ + +L  M       DI+T+N LI     G  +E+   L + +  K +
Sbjct: 328 VNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV 387

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T+   + A  +       L +FEEM ++GC PD  T   LI    S  ++ +   
Sbjct: 388 SPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALD 447

Query: 236 LVRTMH 241
           L++ M 
Sbjct: 448 LLKDME 453



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 19/249 (7%)

Query: 17  APHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKS 76
           +P  + FN        +LIN L     P+L           A  +FEEMK  G TP   +
Sbjct: 388 SPDVYTFN--------ILINALCKVGDPHL-----------ALRLFEEMKNSGCTPDEVT 428

Query: 77  HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
           +  L+      G + K   ++  M  +G    T   N++++   +  + E+ EEV   M+
Sbjct: 429 YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMD 488

Query: 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196
               + +  T+N LI+   +   I+   GL   + ++ L+P+ +T+ S L  Y ++   +
Sbjct: 489 LQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIK 548

Query: 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYG 256
           +  +I E M   G   D  T   LI+      + +    ++R M        P  +N   
Sbjct: 549 KAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVL 608

Query: 257 EKGVARSNL 265
           +    R+N+
Sbjct: 609 QSLFRRNNI 617



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            +V+ EM   GI P + +   L+ A  +   V     ++ +M   G+ PD     +++  
Sbjct: 166 ESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQG 225

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           +   G  E    V   M +   +A   T N+LIN Y + G +E   G  Q   A   +PD
Sbjct: 226 FVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPD 285

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
            +T+ + +    +       L++ + M+  G  PD  T  ++++      Q+E+   ++ 
Sbjct: 286 QITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILN 345

Query: 239 TM 240
            M
Sbjct: 346 QM 347



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 77/172 (44%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G++P + +  +L+ A  K G+      +  +M  SG  PD    N++++    LG+  K 
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            ++L  ME         TYN +I+   +   IE+ E +F  +  + +  + +T+ + +  
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             + K       +  +MI  G  P+  T   +++    +  I++   ++ TM
Sbjct: 506 LCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 6/177 (3%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA--ADISTYNILINI 153
           ++ +M + G +    V++S L+ Y     F+   +++    +  +   AD   YN L+N+
Sbjct: 96  LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNV 155

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
              G  ++ +E ++  + A+ +KPDVVT+ + + A  R    R  + + EEM   G  PD
Sbjct: 156 LVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPD 215

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK----DMKTALPIYFNLYGEKGVARSNLG 266
             T   L+     E  IE    +   M +      K  + +  N Y + G     LG
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALG 272



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 2/215 (0%)

Query: 41  QHTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           Q T N FV     + +   A  V + M + G  P + ++ +++    K G + + +G++N
Sbjct: 286 QITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILN 345

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           QM   G  PD    N+++       + E+  ++   +     + D+ T+NILIN   + G
Sbjct: 346 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 405

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
                  LF+ +      PD VT+ + +          + L++ ++M   GC     T  
Sbjct: 406 DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465

Query: 219 VLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
            +I     + +IE+   +   M     +   I FN
Sbjct: 466 TIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 500


>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 425

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 97/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EM+  G+TP   S+  LLT Y +     +   +  
Sbjct: 79  LVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFA 138

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 198

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLR 281



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 81/151 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 60  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   +   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 120 LLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 167 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  + 
Sbjct: 227 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVD 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      PD     + I   +   +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDIAIHILAGAGRIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 43  TPN-------LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN       L +++ +  F +A ++F EM+ +     + +  +++  Y + G   + + 
Sbjct: 111 TPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 170

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M K G++P+    N++L +YG    F +   +   M++ +   ++ TYN ++ IYG
Sbjct: 171 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 230

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           +    EK   L Q +  + ++P+ +T+++ ++ + +     R   +F+++  +G   D  
Sbjct: 231 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQV 290

Query: 216 TAKVLISA 223
             + +I A
Sbjct: 291 LYQTMIVA 298



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            ++P   ++  L+T + K G        + +M +  +  D  + ++++ L  +L  + K 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             + + +++  +  D+  YN +IN++G+     +   L   +    + P+  ++++ L  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           Y   K +   L IF EM +  C  D  T  ++I         ++   L   M K
Sbjct: 124 YVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 177



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F++M   G +PD     ++++A
Sbjct: 376 EVFDKMRGLGYFPDSNVIALVLNA 399



 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 41/189 (21%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG+  D  +  +M+ 
Sbjct: 238 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +I I+I    G IE+   +F Q++ A  +K
Sbjct: 298 AYERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFE--------------------------------- 203
            D+  +   +  +S+ K Y   +E+F+                                 
Sbjct: 354 -DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDV 412

Query: 204 --EMIDAGC 210
             EM + GC
Sbjct: 413 YMEMQEVGC 421


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  VFE M+  G  P + ++  ++  +   G V K   +++QM + G++PD    N +
Sbjct: 317 SGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLL 376

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +      G       +L  ME    AAD  TYN+LI+   + G +++   LF  L  + +
Sbjct: 377 IRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGI 436

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSSEDQIEQVT 234
           +P+ VT+ + +    +   +       E MI AG  PD  T    I + C ++   E + 
Sbjct: 437 RPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLF 496

Query: 235 TLVRTMHKDMKTALPIYF----NLYGEK--GVARSNLGQYIGN 271
            +   + KD+K +   Y      L+ E+  G+A    GQ +  
Sbjct: 497 FIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQ 539



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A  +   M+  G+     ++ +L+ A  KTG V +   + + +   G++P++   N
Sbjct: 385 HIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFN 444

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-NIYGRGGFIEKMEGLF--QSL 170
           +++N   + G+F+     L  M    YA D  TY+  I N+    G     EGLF    +
Sbjct: 445 TVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKG---SQEGLFFIDEM 501

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
             K +KP  V +T  +     ++ Y     I+ +M+  GC PD  T    + A  +E ++
Sbjct: 502 LQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRL 561

Query: 231 EQVTTLVRTMHK 242
           ++   +V  M K
Sbjct: 562 DEAENVVTEMKK 573



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 74/176 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + ++MK LG  PT +++  L+  + +     + E ++N+M  SGL P       ++N Y 
Sbjct: 252 MLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYC 311

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+      V  +M       ++ TYN ++  +   G + K   L   +    ++PDVV
Sbjct: 312 REGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVV 371

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           T+   +              +   M   G   D  T  VLI A     ++++  +L
Sbjct: 372 TYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSL 427



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 4/186 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F EM +    P M +H  L+      G   +   ++ +M + G +P T    ++
Sbjct: 216 DEALELFREMTQ----PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAAL 271

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++L+ R  + E+ E++L  M        + T  I++N Y R G +     +F+S+  K  
Sbjct: 272 VDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGC 331

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +P+V T+ + +  +       + + + ++M + G  PD  T  +LI     +  I     
Sbjct: 332 EPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFR 391

Query: 236 LVRTMH 241
           L+R M 
Sbjct: 392 LLRLME 397



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 4/170 (2%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            PT  ++  L+ A  +  ++   +  ++ M +SG +PD F  NS++  Y R  Q E   +
Sbjct: 126 APTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHD 185

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +   M    ++ D  +Y  LI  +   G I++   LF+ +     +PD+ T  + +    
Sbjct: 186 LFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREM----TQPDMYTHAALVKGLC 241

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                   L + ++M + G  P       L+     E + E+   ++  M
Sbjct: 242 DAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEM 291



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 80/185 (43%), Gaps = 4/185 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +F +M   G +    S+  L+  + + G + +   +  +M     +PD +   +++ 
Sbjct: 183 AHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREM----TQPDMYTHAALVK 238

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ E+   +L  M++  +      Y  L++++ R    E+ E +   +    L P
Sbjct: 239 GLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMP 298

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            VVT T  + AY R+      + +FE M   GC P+  T   ++    +  ++ +   L+
Sbjct: 299 CVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALL 358

Query: 238 RTMHK 242
             M +
Sbjct: 359 DQMRE 363



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/169 (17%), Positives = 76/169 (44%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           +I  +D   +FE MK+  +  + ++++ +L  +S+   + +   +++ M +  L  +  +
Sbjct: 644 TIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDI 703

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
            N+++N + +L  +     +L +M    +  ++  Y  L++     G  ++ + +F+S  
Sbjct: 704 YNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSR 763

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            K    D + W   +  + RK     C ++   +    C P   T  +L
Sbjct: 764 WKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYAML 812



 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 19/209 (9%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +EM +  + P+  ++ +++       N      +  QM   G  PD     + +  Y   
Sbjct: 499 DEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNE 558

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G+ ++ E V+T M+K     D   YN LI+ +   G  ++   + + +      P+  T+
Sbjct: 559 GRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTF 618

Query: 183 --------------TSRLAAYSRKKLYR--RCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
                            L A S  K        E+FE M          T   ++   S 
Sbjct: 619 FILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSE 678

Query: 227 EDQIEQVTTLVRTMHKDMKTALPIYFNLY 255
           E ++++VT+LV  M ++    LP+  ++Y
Sbjct: 679 ERRLDEVTSLVSLMKEE---NLPLNEDIY 704


>gi|222613030|gb|EEE51162.1| hypothetical protein OsJ_31934 [Oryza sativa Japonica Group]
          Length = 404

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 2/172 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VFEEMK+ GI  ++ ++  L++     G V +   ++ +M   GL P+      +L  + 
Sbjct: 221 VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFC 280

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G      + +  M + +   D+  YNILI++Y R G +E    + +++  K + P+V 
Sbjct: 281 KKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVT 340

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA--CSSEDQI 230
           T+   +  +SR   +R    + +EM + G   D  T  VLI A  C  E+ +
Sbjct: 341 TYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEESM 392



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 81/188 (43%), Gaps = 3/188 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSK---TGNVAKCEGVINQMHKSGLKPDTFVINS 114
           A  V +++K  G+ P++ ++  L+  Y K    GN+   + ++ +M ++G+ P       
Sbjct: 145 AGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGV 204

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y +         V   M++   AA + TYN LI+     G +E+   L + +    
Sbjct: 205 LINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLG 264

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P+ +T+   L  + +K +     +  + M +    PD     +LI       ++E   
Sbjct: 265 LSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAM 324

Query: 235 TLVRTMHK 242
            +   M K
Sbjct: 325 AVKEAMAK 332



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 45/98 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA+   + M    + P +  + +L+  Y + G +     V   M K G+ P+    N 
Sbjct: 285 MADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNC 344

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           ++  + R G +     +L  M++    AD+ TYN+LI 
Sbjct: 345 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIG 382



 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIY---GRGGFIEKMEGLFQSLPAKRLKPD 178
           +GQ  K  +V   ++    A  ++TYN LI+ Y   G  G +  ++ L + +    + P 
Sbjct: 139 IGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPT 198

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
            VT+   +  Y +       + +FEEM   G      T   LIS   SE ++E+   L+ 
Sbjct: 199 AVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLME 258

Query: 239 TMH 241
            M 
Sbjct: 259 EME 261


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 6/180 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVI 112
           Y  DA    +   RLG   T+ S   ++T Y + G       +  +M   +GLKPD    
Sbjct: 389 YGKDARKARKVFDRLGSRDTI-SWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTF 447

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            ++L     LG+  +++ +   + +    +++   N LIN+Y R G +E+ E LF +   
Sbjct: 448 IAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKE 507

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           K     VV+WT+ +AA+S+   Y   L++F+EM   G  PD  T   ++  C+    +EQ
Sbjct: 508 K----TVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQ 563



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 12/192 (6%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           ++ +  F +A  +++++   G   T  + + +L A S    +A+   V + + + GL  +
Sbjct: 283 YVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSE 342

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF---IEKMEG 165
             V  +++N+Y + G  E+  +V  AM+      D   ++ LI  Y   G+     K   
Sbjct: 343 VAVATALVNMYAKCGSLEEARKVFNAMKN----RDAVAWSTLIGAYASNGYGKDARKARK 398

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISAC 224
           +F  L ++    D ++W + +  Y +       ++IF EM  A G  PD  T   ++ AC
Sbjct: 399 VFDRLGSR----DTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEAC 454

Query: 225 SSEDQIEQVTTL 236
           +S  ++ +V  L
Sbjct: 455 ASLGRLSEVKAL 466



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 7/209 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A  +F+EMK   + P   +++ +++ +S    + +   +  ++  +G   D  V  +
Sbjct: 189 WSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATA 247

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAK 173
           ++N+YG+ G   +  EV   M+K     D+ ++N++I  Y   G F E +E L+Q L  +
Sbjct: 248 LINMYGKCGSSHEAREVFDKMKK----RDMVSWNVMIGCYVLNGDFHEALE-LYQKLDME 302

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             K    T+ S L A S  K   +   +   +++ G   +   A  L++  +    +E+ 
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEA 362

Query: 234 TTLVRTMHKDMKTALPIYFNLYGEKGVAR 262
             +   M      A       Y   G  +
Sbjct: 363 RKVFNAMKNRDAVAWSTLIGAYASNGYGK 391



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 62  FEEMKRL---GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            EE +RL       T+ S   ++ A+S+ G  A+   +  +M   G+KPD     S+L +
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFV 554

Query: 119 YGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               G  E+     T M E  + A     +  ++++ GR G +   + L +S+P    +P
Sbjct: 555 CTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMP---FEP 611

Query: 178 DVVTWTSRLAA 188
           D V W + L A
Sbjct: 612 DPVAWMTFLTA 622



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA +VFE M        + S   ++ AY++ G+  +   +  +M+  GL  D     S+L
Sbjct: 60  DARSVFESMDWR--QRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVL 117

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                L Q  ++   +      S+    S  N L+ +Y R G +   + +FQSL  +   
Sbjct: 118 GACSSLAQGREIHNRVFYSGLDSFQ---SLANALVTMYARFGSVGDAKRMFQSLQTR--- 171

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            D  +W + + A+S+   +   L IF+EM
Sbjct: 172 -DETSWNAVILAHSQSGDWSGALRIFKEM 199



 Score = 41.2 bits (95), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 82/194 (42%), Gaps = 16/194 (8%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P   + + +L + S  G+V +   +  ++  S  + DT V N+++++YG+         V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS- 190
             +M+      ++ ++N +I  Y + G   +   L+  +  + L  D VT+ S L A S 
Sbjct: 65  FESMDWRQR--NVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 191 -------RKKLYRRCLEIFEEMIDA-----GCYPDGGTAKVLISACSSEDQIE-QVTTLV 237
                    +++   L+ F+ + +A       +   G AK +  +  + D+       L 
Sbjct: 123 LAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILA 182

Query: 238 RTMHKDMKTALPIY 251
            +   D   AL I+
Sbjct: 183 HSQSGDWSGALRIF 196


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 90/161 (55%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + ++ +++  Y + G +A+ E ++ +M + GLKP+T    +++  + + G F++  E+
Sbjct: 312 PNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFEL 371

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           +  M++  +  +I TYN +I+ + + G I++   + +   ++ LK D +T+T  +  + +
Sbjct: 372 MNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCK 431

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +      L++F+ M++ GC PD      LIS    + Q+E+
Sbjct: 432 QGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEE 472



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 86/185 (46%), Gaps = 1/185 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F D    F  M  +G  P + ++   +    K   V +   V+ +M   GLKP+ +   +
Sbjct: 224 FKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT 283

Query: 115 MLNLYGRLGQFEKMEEV-LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++   ++G  E+   + L  ++  SY  ++ TY ++I  Y R G + + E L   +  +
Sbjct: 284 LIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQ 343

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            LKP+  T+T+ +  + +   + R  E+  +M   G  P+  T   +I     + +I++ 
Sbjct: 344 GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEA 403

Query: 234 TTLVR 238
             ++R
Sbjct: 404 YKVLR 408



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 67/159 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  +MK+ G  P + ++  ++  + K G + +   V+      GLK D      
Sbjct: 365 FDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTI 424

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + G      ++   M +     DI  Y  LI+ Y +   +E+ +  F       
Sbjct: 425 LITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 484

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L P   T+TS +A Y +       L +FE M+  GC+ D
Sbjct: 485 LLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFAD 523



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 76/169 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            + A  +   M   G+ P   ++  L+  + K G+  +   ++N+M + G  P+ +  N+
Sbjct: 330 LARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNA 389

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+ ++  +VL          D  TY ILI  + + G I     LF  +    
Sbjct: 390 VIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENG 449

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             PD+  +TS ++ Y +++      + F++ +  G  P   T   +I+ 
Sbjct: 450 CCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAG 498



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 77/160 (48%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  G+   +++   +L    +TG+      V + M ++G+ PD     +++ +  R G
Sbjct: 128 EMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREG 187

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           + E+++ +L AM +  ++ D +T  +++      G  + +   F+ +      P+VV +T
Sbjct: 188 KVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYT 247

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + +    +++  ++   + EEM+  G  P+  T   LI  
Sbjct: 248 AWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDG 287



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 85/225 (37%), Gaps = 36/225 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  VF+ M R G+ P  +S   L+    + G V + + ++  M + G   D      
Sbjct: 154 FVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTV 213

Query: 115 MLNLYGRLGQFEKMEEVLTAM-EKGS------YAADIS----------TYNILINIYGRG 157
           ++      G+F+ + E    M E G+      Y A I            +++L  + GRG
Sbjct: 214 VVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRG 273

Query: 158 ------------------GFIEKMEGLFQSL-PAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                             G+ E+   LF  L  +   KP+V T+T  +  Y R+    R 
Sbjct: 274 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARA 333

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
             +   M++ G  P+  T   LI         ++   L+  M ++
Sbjct: 334 EMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQE 378


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 46  LFVFIFSIY---------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           L V++F+I           SDA  VF+E+ +  + PT+ S   L+  Y K GN+ +   +
Sbjct: 238 LNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRL 297

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            +QM KS  +PD F  ++++N   +  + +    +   M K     +   +  LI+ + R
Sbjct: 298 KHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSR 357

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G I+ M+  +Q + +K L+PD+V + + +  + +         I + MI  G  PD  T
Sbjct: 358 NGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKIT 417

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              LI        +E    + + M ++
Sbjct: 418 YTTLIDGFCRGGDVETALEIRKEMDQN 444



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 87/197 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH +F+EM + G+ P       L+  +S+ G +   +    +M   GL+PD  + N+++N
Sbjct: 329 AHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVN 388

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G       ++  M +     D  TY  LI+ + RGG +E    + + +    ++ 
Sbjct: 389 GFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIEL 448

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D V +++ +    ++           EM+ AG  PD  T  +++ A   +   +    L+
Sbjct: 449 DRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLL 508

Query: 238 RTMHKDMKTALPIYFNL 254
           + M  D      + +N+
Sbjct: 509 KEMQSDGHVPSVVTYNV 525



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 82/179 (45%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +++M   G+ P +  +  L+  + K G++     +++ M + GL+PD     ++++ + R
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCR 427

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G  E   E+   M++     D   ++ L+    + G +   E   + +    +KPD VT
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +T  + A+ +K   +   ++ +EM   G  P   T  VL++      Q++    L+  M
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAM 546



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 63/134 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM + GI         L+    K G V   E  + +M ++G+KPD      M++
Sbjct: 434 ALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMD 493

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + + G  +   ++L  M+   +   + TYN+L+N   + G ++  + L  ++    + P
Sbjct: 494 AFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553

Query: 178 DVVTWTSRLAAYSR 191
           D +T+ + L  + R
Sbjct: 554 DDITYNTLLEGHHR 567



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA     EM R GI P   ++ +++ A+ K G+      ++ +M   G  P     N +L
Sbjct: 468 DAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLL 527

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           N   +LGQ +  + +L AM       D  TYN L+  + R
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHR 567



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 63/137 (45%)

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           G   ++  +G   + +V N ++N + + G     ++V   + K S    + ++N LIN Y
Sbjct: 226 GFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGY 285

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G +++   L   +   R +PDV T+++ + A  ++        +F+EM   G  P+ 
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPND 345

Query: 215 GTAKVLISACSSEDQIE 231
                LI   S   +I+
Sbjct: 346 VIFTTLIHGHSRNGEID 362


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 83/193 (43%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S    D   +F EM   G+     ++  L+      G+    + V  QM   G+ PD
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 469

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               + +L+     G+ EK  EV   M+K     DI  Y  +I    + G ++    LF 
Sbjct: 470 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 529

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
           SL  K +KP+VVT+ + ++    K+L +    + ++M + G  P+ GT   LI A   + 
Sbjct: 530 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 589

Query: 229 QIEQVTTLVRTMH 241
                  L+R M 
Sbjct: 590 DKAASAELIREMR 602



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 91/190 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  +F+EM+  GI P + ++  L++     G  +    +++ M +  + P+    N
Sbjct: 275 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 334

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + + G+F + E++   M K S   DI TYN L+N +     ++K + +F+ + +K
Sbjct: 335 ALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK 394

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDVVT+ + +  + + K      E+F EM   G   D  T   LI     +   +  
Sbjct: 395 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 454

Query: 234 TTLVRTMHKD 243
             + + M  D
Sbjct: 455 QKVFKQMVSD 464



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 75/161 (46%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ +  K  +V     +  +M   G++P+    +S+++     G++    ++L+ M +  
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              ++ T+N LI+ + + G   + E L+  +  + + PD+ T+ S +  +       +  
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 385

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++FE M+   C+PD  T   LI       ++E  T L R M
Sbjct: 386 QMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM 426



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 83/188 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA A+ ++M  +G  P   +   L+         ++   ++++M + G +P+      
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 230

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G  +    +L  ME     AD+  +N +I+   +   ++    LF+ +  K 
Sbjct: 231 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 290

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VVT++S ++       +    ++  +MI+    P+  T   LI A   E +  +  
Sbjct: 291 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 350

Query: 235 TLVRTMHK 242
            L   M K
Sbjct: 351 KLYDDMIK 358



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 35/186 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +  +M    I P + +   L+ A+ K G   + E + + M K  + PD F  NS
Sbjct: 311 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNS 370

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK------------ 162
           ++N +    + +K +++   M       D+ TYN LI  + +   +E             
Sbjct: 371 LVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG 430

Query: 163 -----------MEGLF------------QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                      ++GLF            + + +  + PD++T++  L          + L
Sbjct: 431 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490

Query: 200 EIFEEM 205
           E+F+ M
Sbjct: 491 EVFDYM 496



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 62/146 (42%)

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           G+   M KS   P     N +L+   ++ +F+ +  +   M++      + TYNILIN +
Sbjct: 71  GLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCF 130

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            R   I     L   +     +P +VT +S L  Y   K     + + ++M++ G  PD 
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
            T   LI      ++  +   LV  M
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRM 216



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 75/199 (37%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F  M +    P++     LL+A +K         +  +M +  +    +  N 
Sbjct: 66  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + R  Q      +L  M K  Y   I T + L+N Y  G  I     L   +    
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PD +T+T+ +            + + + M+  GC P+  T  V+++        +   
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M      A  + FN
Sbjct: 246 NLLNKMEAAKIEADVVIFN 264


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 87/188 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A ++ +EM ++G+ P ++   +L+ A+ K G V + + VI  M  +G  PD F  NS
Sbjct: 268 WKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNS 327

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++++Y    +  +   V   M       DI  +  LI+ + +   I K   L + +    
Sbjct: 328 LIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMG 387

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDV TWT+ +  + +        E+F  M   G  P+  T  V++     E+ + +  
Sbjct: 388 FVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAV 447

Query: 235 TLVRTMHK 242
           +L + M K
Sbjct: 448 SLAKAMEK 455



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +  EM   G+ P + ++  L+      G   +   ++++M K G++PD  ++N +
Sbjct: 234 SEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNIL 293

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + + G+  + + V+  M       D+ TYN LI+IY     + +   +F  + ++  
Sbjct: 294 VDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGR 353

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+V +TS +  + + K   + + + EEM   G  PD  T   LI       +      
Sbjct: 354 LPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKE 413

Query: 236 LVRTMHK 242
           L   MHK
Sbjct: 414 LFLNMHK 420



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 81/181 (44%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V   M +LG+ PT+ +   L+      GNVA+  G+ + M K     D +    ++N  
Sbjct: 133 SVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGL 192

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G        L  ME+ ++  ++  Y+ +++   + G + +   L   +  K ++P++
Sbjct: 193 CKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNL 252

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           VT+   +        ++    + +EM+  G  PD     +L+ A   E ++ Q  +++  
Sbjct: 253 VTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGF 312

Query: 240 M 240
           M
Sbjct: 313 M 313



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 7/196 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P++ VF   I+        + A  + EEM ++G  P + +   L+  + + G     + +
Sbjct: 355 PDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKEL 414

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              MHK G  P+      +L+   +     +   +  AMEK +   +I  Y+IL++    
Sbjct: 415 FLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCS 474

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +     LF SLP K L+ +V  +T  +    ++    +  ++   M + GC P+  T
Sbjct: 475 AGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCT 534

Query: 217 AKVLISACSSEDQIEQ 232
             V +    ++ +I +
Sbjct: 535 YNVFVQGLLTKKEIAR 550



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 1/190 (0%)

Query: 54  YFSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +++ A ++ + M   LGI     +  +++    +   VA    V+  M K GL+P    +
Sbjct: 91  HYTTAISLVKHMFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTL 150

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            +++N     G   +   +   MEK  Y  D+ TY +LIN   + G      G  + +  
Sbjct: 151 TTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEE 210

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +  KP+VV +++ +    +  L    L +  EM   G  P+  T   LI    +  + ++
Sbjct: 211 RNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKE 270

Query: 233 VTTLVRTMHK 242
             +L+  M K
Sbjct: 271 AGSLLDEMMK 280



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/181 (18%), Positives = 75/181 (41%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
             +M+     P +  +  ++    K G V++   + ++M+  G++P+      ++     
Sbjct: 205 LRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCN 264

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G++++   +L  M K     D+   NIL++ + + G + + + +   +      PDV T
Sbjct: 265 FGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFT 324

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           + S +  Y  +      + +F  M+  G  PD      LI     +  I +   L+  M 
Sbjct: 325 YNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMS 384

Query: 242 K 242
           K
Sbjct: 385 K 385


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S AH +F EM   G  P + ++ +L+   +K  N      +   M  +G KPD    + 
Sbjct: 504 LSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSI 563

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ + G  G  E+ E V   M +  +  D   Y +L++++G+ G +EK    + ++    
Sbjct: 564 VMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAG 623

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L P+V T  S L+A+ R         + + M+  G  P   T  +L+S C+
Sbjct: 624 LLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCT 674



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 103/211 (48%), Gaps = 8/211 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F   + + E+M + G  P + ++  L+ +Y +   + +   V NQM + G +PD     +
Sbjct: 399 FGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCT 458

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +    +   M++   + D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 459 LIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQG 518

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQIE 231
             P++VT+   +A  ++ + Y+  LE++ +M +AG  PD  T  +++     C   ++ E
Sbjct: 519 CVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAE 578

Query: 232 QVTTLVRTMHKDMKTALPIY---FNLYGEKG 259
            V   +R  H       P+Y    +L+G+ G
Sbjct: 579 AVFFEMRQNH--WVPDEPVYGLLVDLWGKAG 607



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 95/250 (38%), Gaps = 20/250 (8%)

Query: 11  LCVAQRAPHSWNFNY--------LPYPSHFMLINFLLLQHT-----PNLFVFIFSI---- 53
            C  +R P  W+  +        L     F  IN LL Q       PN+  +   I    
Sbjct: 370 FCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYG 429

Query: 54  ---YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110
              Y  +A  VF +M+ +G  P   ++  L+  ++K G +     +  +M + GL PDTF
Sbjct: 430 RANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTF 489

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             + M+N  G+ G       +   M       +I TYNILI +  +    +    L++ +
Sbjct: 490 TYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDM 549

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
                KPD VT++  +              +F EM      PD     +L+        +
Sbjct: 550 QNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNV 609

Query: 231 EQVTTLVRTM 240
           E+      TM
Sbjct: 610 EKAWEWYHTM 619



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 86/187 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +   A +++E M+ +G++P   ++ +++    K+GN++    +  +M   G  P+    N
Sbjct: 468 FLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYN 527

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++ L  +   ++   E+   M+   +  D  TY+I++ + G  G++E+ E +F  +   
Sbjct: 528 ILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQN 587

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PD   +   +  + +     +  E +  M+ AG  P+  T   L+SA     ++   
Sbjct: 588 HWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRLPDA 647

Query: 234 TTLVRTM 240
             L++ M
Sbjct: 648 YNLLQNM 654



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A AVF EM++    P    + LL+  + K GNV K     + M ++GL P+    N
Sbjct: 573 YLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPNVPTCN 632

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           S+L+ + R+ +      +L  M        + TY +L++
Sbjct: 633 SLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLS 671


>gi|168032055|ref|XP_001768535.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680248|gb|EDQ66686.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 21/227 (9%)

Query: 11  LCVAQRAPHSWNFNYLPYP-SHFMLINFLLLQHTPNLFVF--IFSIYFS-----DAHAVF 62
           +C+ +R  H  +     Y  +H    +F+     P  FV   + ++Y       DA  VF
Sbjct: 53  VCLLRRCTHMKDLAEGKYVHAHMAKSDFV-----PTTFVLNALVNMYMKCGSLVDARQVF 107

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           + M    +   M ++ ++LT Y+K G       +  QM K  +  D     ++LN+   L
Sbjct: 108 DRM----VERDMFTYTMMLTGYAKLGYPEDAYKMYEQMQKERVPVDRITFTTILNVCSTL 163

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
              EK  +V   M +G    DI   N LI++Y + G +++   +F+ +  +    D+VTW
Sbjct: 164 RSLEKGMKVHQDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEMDNR----DIVTW 219

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
              +   +R   +    E F+ M+D G  PD  T   +++AC+S +Q
Sbjct: 220 NIMVGGAARNGYFDEAFEFFKAMLDEGQKPDKVTYISILNACTSLEQ 266



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 8/169 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+++ +  +     S   +++AY++ G   +      +M   G+  D     ++L
Sbjct: 301 DALKVFQKLPQRNVV----SWTSVISAYAQAGEPERALECYAKMLNEGMVADKRAYTTIL 356

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N+   LG  EK + V   + +   A DI T N LI++Y + G ++    LFQ +  +   
Sbjct: 357 NVCAMLGDIEKGKAVHGHIVQSGIATDIITENGLIDMYVKCGRLKDAYRLFQDMNVR--- 413

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            DVV+WT+ +  + + + Y+  L+ F +M   G  P+  T   ++ AC+
Sbjct: 414 -DVVSWTTLIEGWVQHRQYQEALDTFNDMQLEGVMPNTVTFLGVLKACA 461



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           +++ GI P+  +++ LL   +   ++A+ + V   M KS   P TFV+N+++N+Y + G 
Sbjct: 40  LEQRGIEPSSYAYVCLLRRCTHMKDLAEGKYVHAHMAKSDFVPTTFVLNALVNMYMKCGS 99

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
                +V   M +     D+ TY +++  Y + G+ E    +++ +  +R+  D +T+T+
Sbjct: 100 LVDARQVFDRMVE----RDMFTYTMMLTGYAKLGYPEDAYKMYEQMQKERVPVDRITFTT 155

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPD---GGTAKVLISACSSEDQIEQV 233
            L   S  +   + +++ ++M+  G  PD   G T   + + C +  Q  +V
Sbjct: 156 ILNVCSTLRSLEKGMKVHQDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRV 207



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 11/175 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH VF+EM    I     +  +++   ++ G   +       M   G KPD     S+LN
Sbjct: 204 AHRVFKEMDNRDIV----TWNIMVGGAARNGYFDEAFEFFKAMLDEGQKPDKVTYISILN 259

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               L Q   +  V+    K  +  D+     L+N++ + G +     +FQ LP +    
Sbjct: 260 ACTSLEQGTLLHSVIM---KAGFELDVRVGTALVNMFSKCGSVVDALKVFQKLPQR---- 312

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +VV+WTS ++AY++     R LE + +M++ G   D      +++ C+    IE+
Sbjct: 313 NVVSWTSVISAYAQAGEPERALECYAKMLNEGMVADKRAYTTILNVCAMLGDIEK 367


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 7/209 (3%)

Query: 40  LQHTPNLFVF--IFSIYFSDAHA-----VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
           L   P+ F F  +F  Y S+  A     V+E     G+     +  +LL A  K G + K
Sbjct: 313 LGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEK 372

Query: 93  CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            E ++ +    GL P+  + N+M++ Y R G        + AMEK     D   YN LI 
Sbjct: 373 AEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIR 432

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            +   G +E  E     +  K + P V T+   +  Y RK  + +C +I +EM D G  P
Sbjct: 433 RFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMP 492

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +  +   LI+      ++ +   + R M 
Sbjct: 493 NVVSYGTLINCLCKGSKLLEAQIVKRDME 521



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     + +EM+  G  P + S+  L+    K   + + + V   M   G+ P   + N 
Sbjct: 475 FDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNM 534

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++     G+ E        M K     ++ TYN LI+     G + + E L   +  K 
Sbjct: 535 LIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG 594

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           LKPDV T+ S ++ Y      +RC+ ++EEM  +G  P   T  +LIS C+ E
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKE 647



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 75/174 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P    +  ++  Y + G++      I  M K G+KPD    N ++  +  LG+ E  
Sbjct: 384 GLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENA 443

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           E+ +  M+    +  + TYNILI  YGR    +K   + + +      P+VV++ + +  
Sbjct: 444 EKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINC 503

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             +         +  +M D G  P      +LI  C S+ +IE      + M K
Sbjct: 504 LCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLK 557



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 4/187 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA    +EM + GI   + ++  L+   S TG +++ E ++ ++ + GLKPD F  NS
Sbjct: 545 IEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNS 604

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ YG  G  ++   +   M++      + TY++LI++  + G IE  E LF  +    
Sbjct: 605 LISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG-IELTERLFGEMS--- 660

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKPD++ +   L  Y+      +   + ++MI+     D  T   LI       ++ +V 
Sbjct: 661 LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVR 720

Query: 235 TLVRTMH 241
           +L+  M+
Sbjct: 721 SLIDEMN 727



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 1/192 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  MK   I P++  + +L+    K   +   E + ++M    L P     N++++ Y 
Sbjct: 201 LFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYC 260

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  EK  +V   M+       + T+N L+    + G +E  E + + +      PD  
Sbjct: 261 KAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAF 320

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-RT 239
           T++     YS  +     L ++E  +D+G   +  T  +L++A   E +IE+   ++ R 
Sbjct: 321 TFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGRE 380

Query: 240 MHKDMKTALPIY 251
           M K +     IY
Sbjct: 381 MAKGLVPNEVIY 392



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 31/221 (14%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---------- 104
            S+A  +  E+ R G+ P + ++  L++ Y   GNV +C  +  +M +SG          
Sbjct: 580 LSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHL 639

Query: 105 ---------------------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                                LKPD  V N +L+ Y   G  EK   +   M + S   D
Sbjct: 640 LISLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLD 699

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
            +TYN LI    + G + ++  L   + A+ ++P+  T+   +  +   K Y      + 
Sbjct: 700 KTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYR 759

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
           EM + G   D      L+S    E + ++   ++  M+  M
Sbjct: 760 EMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNGRM 800



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 48  VFIFSIYF---------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           VFI+++           +DA  +F+EM    + P++ ++  L+  Y K GN  K   V  
Sbjct: 214 VFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRE 273

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M    ++P     N++L    + G  E  E VL  M+   +  D  T++IL + Y    
Sbjct: 274 RMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNE 333

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             E   G++++     +K +  T +  L A  ++    +  EI    +  G  P+
Sbjct: 334 KAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPN 388



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 52  SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           S   S+A  +F  ++  GI P+  S  LLL    KT        V   + +S  +P  F+
Sbjct: 122 SKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFM 181

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
               +    +L    K  E+   M+       +  YN+LI+   +G  +   E LF  + 
Sbjct: 182 YGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEML 241

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           A+RL P ++T+ + +  Y +     +  ++ E M      P   T   L+        +E
Sbjct: 242 ARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVE 301

Query: 232 QVTTLVRTMHKDM-----KTALPIYFNLYGEKGVARSNLGQY 268
               +++ M KD+          I F+ Y     A + LG Y
Sbjct: 302 DAENVLKEM-KDLGFVPDAFTFSILFDGYSSNEKAEAALGVY 342



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 8/212 (3%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           YPS   L   LLL H      F  +I       VF  +      P+   +   + A  K 
Sbjct: 141 YPSSDSLT--LLLDHLVKTKQFRVTI------NVFLNILESDFRPSKFMYGKAIQAAVKL 192

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
            +V K   + N+M    + P  F+ N +++   +  +    E++   M        + TY
Sbjct: 193 SDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 252

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           N LI+ Y + G  EK   + + + A  ++P ++T+ + L    +  +      + +EM D
Sbjct: 253 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKD 312

Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            G  PD  T  +L    SS ++ E    +  T
Sbjct: 313 LGFVPDAFTFSILFDGYSSNEKAEAALGVYET 344



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 1/205 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A    E M++ G+ P   ++  L+  + + G +   E  +N+M   G+ P     N ++ 
Sbjct: 408 ARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIG 467

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            YGR  +F+K  ++L  ME      ++ +Y  LIN   +G  + + + + + +  + + P
Sbjct: 468 GYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSP 527

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V  +   +     K          +EM+  G   +  T   LI   S   ++ +   L+
Sbjct: 528 KVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLL 587

Query: 238 RTM-HKDMKTALPIYFNLYGEKGVA 261
             +  K +K  +  Y +L    G A
Sbjct: 588 LEISRKGLKPDVFTYNSLISGYGFA 612


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 90/185 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A++ + EM   GI P + ++  ++ A  K   + K   V+N M K+G+ PD    NS+L+
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 274

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ ++    L  M       D+ TY++L++   + G   +   +F S+  + LKP
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++ T+ + L  Y+ K        + + M+  G +PD     +LI A + + +++Q   + 
Sbjct: 335 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVF 394

Query: 238 RTMHK 242
             M +
Sbjct: 395 SKMRQ 399



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    ++M+  G+ P + ++ LL+    K G   +   + + M K GLKP+     ++L
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y   G   +M  +L  M +     D   ++ILI  Y + G +++   +F  +  + L 
Sbjct: 344 QGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 403

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+ VT+ + +    +       +  FE+MID G  P       LI    + ++ E+   L
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 463

Query: 237 VRTMHKDMKTALPIYFN 253
           +  M         I+FN
Sbjct: 464 ILEMLDRGICLNTIFFN 480



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 88/197 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF +M++ G+ P   ++  ++    K+G V        QM   GL P   V NS+++
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 ++E+ EE++  M       +   +N +I+ + + G + + E LF+ +    +KP
Sbjct: 450 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V+T+ + +  Y         +++   M+  G  P+  T   LI+      ++E    L 
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 238 RTMHKDMKTALPIYFNL 254
           + M     +   I +N+
Sbjct: 570 KEMESSGVSPDIITYNI 586



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA   FE+M   G++P    +  L+          + E +I +M   G+  +T   NS++
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + + G+  + E++   M +     ++ TYN LIN Y   G +++   L   + +  LK
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 543

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           P+ VT+++ +  Y +       L +F+EM  +G  PD  T  +++  
Sbjct: 544 PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQG 590



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 78/175 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V   M + G+ P   ++  +L  Y  +G   +  G + +M   G++PD    + +++
Sbjct: 250 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+  +  ++  +M K     +I+TY  L+  Y   G + +M GL   +    + P
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 369

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           D   ++  + AY+++    + + +F +M   G  P+  T   +I       ++E 
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVED 424



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 6/178 (3%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G  P + S+  ++  + K G+  K     ++M   G+ PD    NS++    +    +K 
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            EVL  M K     D  TYN +++ Y   G  ++  G  + + +  ++PDVVT+ S L  
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY-SLLMD 309

Query: 189 YSRKKLYRRCLE---IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           Y  K    RC+E   IF+ M   G  P+  T   L+   +++  + ++  L+  M ++
Sbjct: 310 YLCKN--GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 11/152 (7%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM   GI         ++ ++ K G V + E +   M + G+KP+    N+++N
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   G+ ++  ++L+ M       +  TY+ LIN Y +   +E    LF+ + +  + P
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579

Query: 178 DVVTW---------TSRLAAYSRKKLYRRCLE 200
           D++T+         T R AA   K+LY R  E
Sbjct: 580 DIITYNIILQGLFQTRRTAA--AKELYVRITE 609



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 9/179 (5%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127
           +  TP +K     L A  +T +      V+ +M + G  P+ F  N +L       + ++
Sbjct: 123 IAFTPLLKG----LCADKRTSDAMDI--VLRRMTELGCIPNVFSYNILLKGLCDENRSQE 176

Query: 128 MEEVLTAMEK---GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             E+L  M     G    D+ +Y  +IN + + G  +K    +  +  + + PDVVT+ S
Sbjct: 177 ALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            +AA  + +   + +E+   M+  G  PD  T   ++    S  Q ++    ++ M  D
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD 295



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 35/222 (15%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           ++  +FE M R+G+ P + ++  L+  Y   G + +   +++ M   GLKP+T   ++++
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADI-------------------------------- 144
           N Y ++ + E    +   ME    + DI                                
Sbjct: 554 NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQ 613

Query: 145 ---STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
              STYNI+++   +    +    +FQ+L    LK +  T+   + A  +        ++
Sbjct: 614 IELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDL 673

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           F      G  P+  T +++      +  +E++  L  +M  +
Sbjct: 674 FVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 715



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 82/181 (45%), Gaps = 4/181 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM+  G++P + ++ ++L    +T   A  + +  ++ +SG + +    N +L
Sbjct: 564 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 623

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +    +   ++   +       +  T+NI+I+   + G  ++ + LF +  +  L 
Sbjct: 624 HGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV 683

Query: 177 PDVVTWTSRLAAYS--RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           P+   WT RL A +   + L     ++F  M D GC  D G    ++       +I +  
Sbjct: 684 PNY--WTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAG 741

Query: 235 T 235
           T
Sbjct: 742 T 742



 Score = 41.2 bits (95), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 8/212 (3%)

Query: 56  SDA-HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM---HKSGLKPDTFV 111
           SDA   V   M  LG  P + S+ +LL          +   +++ M      G  PD   
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
             +++N + + G  +K       M       D+ TYN +I    +   ++K   +  ++ 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              + PD +T+ S L  Y      +  +   ++M   G  PD  T  +L+       +  
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 232 QVTTLVRTMHK-DMKTALPIYFNL---YGEKG 259
           +   +  +M K  +K  +  Y  L   Y  KG
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 26/223 (11%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+  +F   IY         +A   F +M++ G+ P + S+  ++    K G +      
Sbjct: 294 PDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQ 353

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             QM   GL PD  V  ++++ +   G++EK EE+   M        +  +  +I+   +
Sbjct: 354 FCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFK 413

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-------- 208
            G + + + LF  +P   +KP+VV++ + +  Y         L++ ++M+          
Sbjct: 414 EGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVT 473

Query: 209 -----------GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                      G  PD  T   LI +C  + +IE V TL R M
Sbjct: 474 FNTLLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREM 516



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 84/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A  +   M +    P + ++  LL  Y+  G++ +   +I+ M ++G++PD  + N  
Sbjct: 243 TEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQ 302

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  Y + G+ ++       M +     DI +Y  +I+   + G ++     F  +    L
Sbjct: 303 IYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGL 362

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+V +T+ +  +S    + +  E+F EM+D G  P       +I     E ++ +  T
Sbjct: 363 SPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKT 422

Query: 236 LVRTM 240
           L   M
Sbjct: 423 LFDLM 427



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 2/157 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +F EM   GI P + +   ++    K   + K E V+ QM    + PD    NS+++
Sbjct: 140 AYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVH 199

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLK 176
            Y   GQ ++   +L  M +     +  TY++LI+   + GG  E  E +  S+   R  
Sbjct: 200 GYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEARE-ILNSMIQSRGN 258

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           P+V T+   L  Y+ K        + + M+  G  PD
Sbjct: 259 PNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPD 295



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 72/165 (43%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           ++ S    +A  + ++M R G  P   ++ +L+    K G   +   ++N M +S   P+
Sbjct: 201 YLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPN 260

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
                 +L+ Y   G   +M  ++  M +     D   +NI I  Y + G +++    F 
Sbjct: 261 VATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFN 320

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +  + L PD++++ + +    +       +  F +MID G  PD
Sbjct: 321 KMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPD 365



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 75/169 (44%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + S+  ++  + K   V K   +  +M   G+ PD    NS+++   ++   +K EEV
Sbjct: 119 PNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEV 178

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           L  M       D +TYN L++ Y   G +++   + + +      P+ VT++  +    +
Sbjct: 179 LRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCK 238

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              +    EI   MI +   P+  T   L+   +++  + ++  L+  M
Sbjct: 239 FGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLM 287



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 68/156 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V  +M    I P   ++  L+  Y  +G + +   ++ QM + G  P+    + +++
Sbjct: 175 AEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLID 234

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G   +  E+L +M +     +++TY  L++ Y   G + +M  L   +    ++P
Sbjct: 235 CLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRP 294

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           D   +  ++ AY +       +  F +M   G  PD
Sbjct: 295 DHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPD 330



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 23/185 (12%)

Query: 43  TPNLFVFI-----FSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++ VF      FS+Y  +  A  +F EM   GI PT+     ++    K G V + + 
Sbjct: 363 SPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKT 422

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + + M  + +KP+    N++++ Y   G+ +++ ++L  M       +  T+N L++   
Sbjct: 423 LFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLD--- 479

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
                         + +  LKPDV T  + + +          L +F EM+      D  
Sbjct: 480 -------------DMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTV 526

Query: 216 TAKVL 220
           T  ++
Sbjct: 527 TENII 531



 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 8/177 (4%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127
           +  TP +++    L A  +T +      VI    K G  PD F    +L       + E+
Sbjct: 49  ISFTPILRT----LCAEKRTSDAMNI--VIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEE 102

Query: 128 MEEVLTAM-EKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
             +++  M E G +   ++ +Y  +I+ + +   + K   LF  +  + + PDVVT  S 
Sbjct: 103 AVDLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSI 162

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +    + +   +  E+  +M D    PD  T   L+    S  Q+++   +++ M +
Sbjct: 163 IDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSR 219


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 1/186 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F+EMK  G+ PT K +  +L  Y K G V K  G++ +M + G     +    ++ 
Sbjct: 249 AISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIK 308

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
             G+ G+ E+   +   M K     D+   N LIN+ G+ G +     LF+ + + +  P
Sbjct: 309 GVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTP 368

Query: 178 DVVTWTSRLAA-YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +VVT+ + + A +  K         +E+M + G  P   T  +LI      +++E+   L
Sbjct: 369 NVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLL 428

Query: 237 VRTMHK 242
           +  M +
Sbjct: 429 LEEMDE 434



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 89/175 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A+ +F+E++      + + + +++    K G +++   + N+M K G  PD +  N+
Sbjct: 457 YEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNA 516

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R+G  ++   +L  ME+     D++++NI++N + R G  +    +F  +   +
Sbjct: 517 LMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSK 576

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +KPDVV++ + L   SR  ++    ++ +EM   G   D  T   ++ A    D+
Sbjct: 577 IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDE 631



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 40  LQHTPNLFVF---IFSIYFSDAHAV-----FEEMKRLGITPTMKSHMLLLTAYSKTGNVA 91
           LQ TPN+  +   I +++ S A A      +E+MK  G+ P+  ++ +L+  + KT  V 
Sbjct: 364 LQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVE 423

Query: 92  KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
           K   ++ +M + G  P      S++N  G+  ++E   E+   + +    +    Y ++I
Sbjct: 424 KALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMI 483

Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
              G+ G + +   LF  +      PDV  + + ++   R  +      +   M + GC 
Sbjct: 484 KHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCT 543

Query: 212 PDGGTAKVLISA 223
           PD  +  ++++ 
Sbjct: 544 PDLNSHNIILNG 555



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 1/171 (0%)

Query: 54  YFSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112
           +    H ++ EM   G   P   ++  L+ A+ K G       + ++M ++GL P   + 
Sbjct: 209 HHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIY 268

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            ++L +Y +LG+ EK   ++  M++   A  + TY  LI   G+ G +E+   +F ++  
Sbjct: 269 TTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLK 328

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +  KPDVV   + +    +       +++FEEM    C P+  T   +I A
Sbjct: 329 EGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKA 379



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 104/280 (37%), Gaps = 76/280 (27%)

Query: 40  LQHTPNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           L  T  ++  I  IYF       A  + +EMK  G   T+ ++  L+    K G V +  
Sbjct: 261 LHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAY 320

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQ-------FEKMEE------------VLTA- 134
            +   M K G KPD  +IN+++NL G+ G+       FE+ME             V+ A 
Sbjct: 321 SIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKAL 380

Query: 135 ----------------MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
                           M++        TY+ILI+ + +   +EK   L + +  K   P 
Sbjct: 381 FESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPC 440

Query: 179 VVTWTSRLAAYSRKKLYR-----------------------------RC------LEIFE 203
              + S + A  + K Y                              +C      +++F 
Sbjct: 441 PAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFN 500

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
           EM   GC PD      L+S        ++  +L+RTM ++
Sbjct: 501 EMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN 540



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 1/157 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSML 116
           A ++F ++K     PT  ++  ++    + G+  K   + N+M   G   PDT   ++++
Sbjct: 178 ALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALI 237

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             +G+LG+ +    +   M++         Y  ++ IY + G +EK  GL Q +  K   
Sbjct: 238 AAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCA 297

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             V T+T  +    +         IF  M+  GC PD
Sbjct: 298 LTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPD 334



 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 86/199 (43%), Gaps = 2/199 (1%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           KR        ++M L+    + G + +    I +M +S        ++ ++ + G+    
Sbjct: 116 KRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMV 175

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTS 184
            K   +   ++        +TYN +I +  + G  EK+  L+  +  +    PD VT+++
Sbjct: 176 NKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSA 235

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
            +AA+ +       + +F+EM + G +P       ++       ++E+   LV+ M K+ 
Sbjct: 236 LIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEM-KEK 294

Query: 245 KTALPIYFNLYGEKGVARS 263
             AL +Y      KGV ++
Sbjct: 295 GCALTVYTYTELIKGVGKA 313


>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
           [Coelocarpum swinglei]
          Length = 440

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F DA ++  EM+  G+ P   S+  LLT Y +     +   V  
Sbjct: 85  LVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYSALLTMYVENKKFLEALSVFA 144

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 145 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 204

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM + G  P+  T  
Sbjct: 205 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 264

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 265 TIISIWGKIGKLDRAAMLFQKLR 287



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 79/151 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K         +I++M  +G+ P+    ++
Sbjct: 66  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYSA 125

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 126 LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 185

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 186 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 216



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 80/183 (43%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
            +F+EM+   ++P   ++  L+T + K G        + +M +  +  D  + ++++ L 
Sbjct: 1   GLFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            +L  + K   + + +++  +  D+  YN +IN++G+         L   +    + P+ 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNA 120

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            ++++ L  Y   K +   L +F EM +  C  D  T  ++I         ++   L   
Sbjct: 121 SSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 240 MHK 242
           M K
Sbjct: 181 MRK 183



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 17/217 (7%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 173 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 232

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L    ++
Sbjct: 233 MIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVE 292

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED-------- 228
            D + + + + AY R  L      +  E+      P      +L  A   E+        
Sbjct: 293 IDQILFQTMIXAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQA 352

Query: 229 ----QIEQVTTLVRTMH-----KDMKTALPIYFNLYG 256
               +++ +T   R +H     K     + ++  +YG
Sbjct: 353 IDAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMYG 389



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 85/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y + G   + + +   M K G++P+    N+
Sbjct: 136 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 195

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   L Q +  + 
Sbjct: 196 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG 255

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 256 IEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIXA 304



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 6/173 (3%)

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           G+ ++M +  L PD +  ++++  +G+ G F+     L  ME+     D+  Y+ LI + 
Sbjct: 1   GLFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            +     K   +F  L      PD+V + + +  + + KL+R    +  EM  AG  P+ 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNA 120

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHK-----DMKTALPIYFNLYGEKGVAR 262
            +   L++      +  +  ++   M +     D+ T   I  ++YG+ G+A+
Sbjct: 121 SSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTC-NIMIDVYGQLGMAK 172



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG++ D  +  +M+ 
Sbjct: 244 ANNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIX 303

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +  I+I    G IE+   +F Q++ A  +K
Sbjct: 304 AYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            D+  +   +  +S+ K Y   +E+F++M   G +PD     ++++A
Sbjct: 360 -DITVFERMIHLFSKYKKYANVVEVFDKMYGLGYFPDSNVIALVLNA 405



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136
           L + Y K  NV +   V ++M+  G  PD+ VI  +LN YG+L +F+K  EV   M+
Sbjct: 370 LFSKYKKYANVVE---VFDKMYGLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEMQ 423


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 88/192 (45%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F  M   G+  T+ S  +++    + G V K + +I +    G+KP+ +  N+++N Y +
Sbjct: 193 FRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLK 252

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
              F  +E++L  M+K     +  TY +LI +  + G +  +E LF  +  + ++ D+  
Sbjct: 253 HRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHV 312

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
           +TS ++   RK   +R   +F+E+ + G  P   T   LI       ++     L+  M 
Sbjct: 313 YTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQ 372

Query: 242 KDMKTALPIYFN 253
                   + FN
Sbjct: 373 SKGVNITQVVFN 384



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 87/183 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM+  G+  T      L+  Y + G + +   + + M K G + D F  N++ +
Sbjct: 364 AEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIAS 423

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + RL ++++ ++ L  M +G       +Y  LI++Y + G +E+ + LF  + +K ++P
Sbjct: 424 CFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQP 483

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +T+   + AY ++   +   +++  M   G  PD  T   LI      D +++   L 
Sbjct: 484 NAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLF 543

Query: 238 RTM 240
             M
Sbjct: 544 SEM 546



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 86/199 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           +D   +F+EM+  GI   +  +  L++   + GN+ +   + +++ + GL P +    ++
Sbjct: 292 NDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGAL 351

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   ++G+    E ++  M+          +N LIN Y R G I++   ++  +  K  
Sbjct: 352 IDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGF 411

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + DV T  +  + ++R K Y    +    M++ G      +   LI     E  +E+   
Sbjct: 412 QADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKR 471

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L   M         I +N+
Sbjct: 472 LFVEMSSKEVQPNAITYNV 490



 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 72/172 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A      M   G+  +  S+  L+  Y K GNV + + +  +M    ++P+    N 
Sbjct: 431 YDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNV 490

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+  Y + G+ ++  ++   M+      D  TY  LI+       +++   LF  +  K 
Sbjct: 491 MIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKG 550

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           L  + VT+T  ++  S+         +++E+   G   D      LI +  S
Sbjct: 551 LDQNSVTYTVMISGLSKAGKSDEAFGLYDEIKRKGYTIDNKVYTALIGSMHS 602



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 56/125 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           +  + +E    GI P   ++  ++ AY K  + +  E ++  M K G+  +      ++ 
Sbjct: 224 SKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIE 283

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           L  + G+   +E++   M +    +DI  Y  LI+   R G I++   LF  L  K L P
Sbjct: 284 LSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLP 343

Query: 178 DVVTW 182
              T+
Sbjct: 344 SSHTY 348


>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 84/173 (48%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           +I +    ++  + E MK  GI+PT+     L+  YS++    K + V   M   G+KPD
Sbjct: 211 YIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENFGVKPD 270

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
                 ++N +   G  ++ + VL  M++     D+  Y+IL+  Y R G  E+ E    
Sbjct: 271 VQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFLN 330

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            +  + LKP+V+T+T+ ++ Y         + +F+EM     +P+  T + LI
Sbjct: 331 IMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTLI 383



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 4/209 (1%)

Query: 56  SDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +A  + +EM K +   P  ++  +L+ A++   N  K   VI+ M  +G+ PD    N+
Sbjct: 112 EEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNT 171

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +  L+ +LG+    E V+T M+      +  TY I+IN Y   G I++   L + +    
Sbjct: 172 LAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDG 231

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQV 233
           + P +  +   +  YS      +  ++F+ M + G  PD  T  ++++A CS+    E  
Sbjct: 232 ISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAK 291

Query: 234 TTLVRTMHKDMKTALPIYFNLYGEKGVAR 262
             L+R    D++  +  Y  L   KG +R
Sbjct: 292 AVLLRMKEYDLQPDVMAYSILV--KGYSR 318



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 84/185 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V  EM+ + + P  +++ +++  Y   G + +   +I +M   G+ P   V N ++
Sbjct: 184 DAENVITEMQNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLV 243

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y    +  K+++V   ME      D+ T+ +++N +   G I++ + +   +    L+
Sbjct: 244 KGYSESMKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQ 303

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDV+ ++  +  YSR+            MID    P+  T   +IS   S  Q++    +
Sbjct: 304 PDVMAYSILVKGYSRQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMRV 363

Query: 237 VRTMH 241
            + M 
Sbjct: 364 FQEMR 368



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 79/153 (51%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF+ M+  G+ P +++  L++ A+  TG + + + V+ +M +  L+PD    + ++  Y 
Sbjct: 258 VFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYS 317

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G+ E+ E  L  M   +   ++ TY  +I+ Y     ++    +FQ + ++ + P++ 
Sbjct: 318 RQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQ 377

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           T+ + +  +   +  RR  EI E +  AG  PD
Sbjct: 378 TFRTLIWGFKEARWPRRAEEILEYIRKAGFTPD 410



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            +  + ++R G  P  +++ LLL++    G + +   ++ QM +  + PD    N++LN 
Sbjct: 10  RSTLKNLRRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNG 69

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL--K 176
           Y   G+ ++ E ++  M++       S+YN LI  YG  G  E+   L Q + AK +  K
Sbjct: 70  YCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEM-AKDVNSK 128

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           P+  T+   + A++  K   +   +   M  AG  PD
Sbjct: 129 PNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPD 165



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 77/183 (42%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V   M+  G+ P + S+  L   ++K G     E VI +M    L+P+      ++N
Sbjct: 150 ARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIVIN 209

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQ ++   ++  M+    +  I+ +N L+  Y       K++ +F+ +    +KP
Sbjct: 210 GYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENFGVKP 269

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV T+   + A+    L      +   M +    PD     +L+   S + + E+    +
Sbjct: 270 DVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFL 329

Query: 238 RTM 240
             M
Sbjct: 330 NIM 332



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 54/125 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A AV   MK   + P + ++ +L+  YS+ G   + E  +N M    LKP+     +
Sbjct: 287 IDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFLNIMIDENLKPNVITYTT 346

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  L Q +    V   M   S   ++ T+  LI  +    +  + E + + +    
Sbjct: 347 VISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKEARWPRRAEEILEYIRKAG 406

Query: 175 LKPDV 179
             PD+
Sbjct: 407 FTPDL 411


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EMK LG+ P + +   +L  + K G +   EG I+ M +  +KP+      +++ Y 
Sbjct: 315 LVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYR 374

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           RL + +    V  AM       +   YN LI  + R G    + GL   +  K ++ D+V
Sbjct: 375 RLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIV 434

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+   + A   K   R+ +++ +EM+  G  P   T   +I+    +  I+    +   M
Sbjct: 435 TYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRM 494

Query: 241 HKDMKTALPIYFNLY 255
            K  K A  + +N++
Sbjct: 495 EKGKKRANVVTYNVF 509



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 15/234 (6%)

Query: 43  TPNLFVF--IFSIYFSDAHA-----VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN   F  + + Y  D++      VFEEMK+ GI  ++ ++  L+      G V +   
Sbjct: 255 SPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVK 314

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++++M   GL P+   +NS+LN + + G     E  + +ME+ +   ++ TY IL++ Y 
Sbjct: 315 LVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYR 374

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R   ++    + +++  K ++P+   +   +A ++R   +R    + +EM   G   D  
Sbjct: 375 RLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIV 434

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF------NLYGEKGVARS 263
           T  VLI A   + ++ +   L+  M   M    P++       N Y EKG  +S
Sbjct: 435 TYNVLIGALCVKGEVRKAVKLLDEML--MVGLEPVHLTYNTIINGYCEKGNIKS 486



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 16/159 (10%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +     + +EM+  G+   + ++ +L+ A    G V K   ++++M   GL+P     N+
Sbjct: 414 WRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNT 473

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y   G  +   E+ T MEKG   A++ TYN+ I    R G +E+   L   +  K 
Sbjct: 474 IINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKG 533

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L P+ VT+ +                I E M++ G  PD
Sbjct: 534 LVPNGVTYDT----------------IKEGMMEKGYTPD 556



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA AV E M   G+ P  + +  L+  +++ G+     G++++M   G++ D    N 
Sbjct: 379 MKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNV 438

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G+  K  ++L  M          TYN +IN Y   G I+    +   +   +
Sbjct: 439 LIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGK 498

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            + +VVT+   +    R        E+  EM++ G  P+G T
Sbjct: 499 KRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVT 540



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 4/176 (2%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P+  S   LL+A      V   E       +  + PD F  N +++   + GQ  K  +V
Sbjct: 148 PSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDV 207

Query: 132 LTAMEKGSYAADISTYNILINIY---GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
              +     A  + TYN +I+ Y   GR G +  ++ L + +    + P+ VT+   +  
Sbjct: 208 AKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNG 267

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
           Y +       + +FEEM   G      T   L+    SE ++E+   LV  M KD+
Sbjct: 268 YCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEM-KDL 322



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA    + M++  + P + ++ +L+  Y +   +     V   M   G++P+  + N 
Sbjct: 344 MTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNC 403

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + R G +  +  +L  M      ADI TYN+LI      G + K   L   +    
Sbjct: 404 LIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVG 463

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L+P  +T+ + +  Y  K   +   EI   M       +  T  V I       ++E+  
Sbjct: 464 LEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETN 523

Query: 235 TLVRTM 240
            L+  M
Sbjct: 524 ELLNEM 529



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 85/195 (43%), Gaps = 10/195 (5%)

Query: 32  FMLINFLLLQHTPNLF-------VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAY 84
           F+L      +H P+ F         + +     A   F+   R  ++P + +  ++++  
Sbjct: 136 FLLAGDAHPRHRPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGL 195

Query: 85  SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY---GRLGQFEKMEEVLTAMEKGSYA 141
            KTG + K   V   +   GL P     N++++ Y   GR G+   ++ +L  M +   +
Sbjct: 196 CKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGIS 255

Query: 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
            +  T+N+L+N Y +         +F+ +  + +   VVT+++ +     +      +++
Sbjct: 256 PNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKL 315

Query: 202 FEEMIDAGCYPDGGT 216
            +EM D G  P+  T
Sbjct: 316 VDEMKDLGLVPNLAT 330



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 4/153 (2%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P  F +N +L+      + +  E    A  +   + D+ T+NI+I+   + G + K   
Sbjct: 147 RPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGD 206

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI---FEEMIDAGCYPDGGTAKVLIS 222
           + + + A  L P VVT+ + +  Y ++    R   +    +EM++AG  P+  T  VL++
Sbjct: 207 VAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVN 266

Query: 223 A-CSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
             C   +    V        + +  ++  Y  L
Sbjct: 267 GYCKDSNTAAAVRVFEEMKQQGIAASVVTYSAL 299



 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/116 (20%), Positives = 49/116 (42%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           + +EM  +G+ P   ++  ++  Y + GN+     +  +M K   + +    N  +    
Sbjct: 455 LLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLC 514

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           R+G+ E+  E+L  M +     +  TY+ +       G+   + G   S P   LK
Sbjct: 515 RMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGMMEKGYTPDVRGFTCSEPQTPLK 570


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 43  TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PNL  F  + ++Y       +A +++  M   GI P +  + +L+    + G + +   
Sbjct: 272 SPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNS 331

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + +     G+K D  + +S+++ Y R+G   K  EV T M K   + ++ TY+ILIN   
Sbjct: 332 LFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLC 391

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           R G + +  G+F  +  + L+P V+T++S +  + + +  R    ++  M+  G  PD  
Sbjct: 392 RNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVV 451

Query: 216 TAKVLISACSSEDQIEQ 232
              +LI+  S +  +++
Sbjct: 452 VCSMLINGLSRQGMMDE 468



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A A+F ++ + G +P    +  L+  + K  + A    +   M  +G+ PD  + N 
Sbjct: 536 LDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNV 595

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N++ R G  E + E+L  + K     DI TYN +I  Y       K   LF+ L   R
Sbjct: 596 LINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGR 655

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +P+ +T+T  + AY +       + IF  M++ G  P+  T   LI      +  E   
Sbjct: 656 TQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAF 715

Query: 235 TLVRTMHKD 243
            L   M  D
Sbjct: 716 ELYEKMLGD 724



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 87/174 (50%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F+ M+  GI P +  + +L+  + + G V     ++ ++ K GL+PD    N+M+  Y 
Sbjct: 577 IFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYC 636

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
            L  F K  ++   ++ G    +  T+ ILI+ Y + G ++    +F S+  +  +P+++
Sbjct: 637 SLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNIL 696

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           T++  +  Y + +      E++E+M+     P+  +  +LI     +  +E+ +
Sbjct: 697 TYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEAS 750



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 86/187 (45%), Gaps = 1/187 (0%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P +     +L        +       + M +SG  P+    ++++N+Y +  + ++ 
Sbjct: 235 GLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEA 294

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
             +   M +     D+  Y+ILIN   R G +E+   LF    A+ +K DVV ++S + A
Sbjct: 295 FSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDA 354

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTTLVRTMHKDMKTA 247
           Y R     + +E++  M+  G  P+  T  +LI+  C +   +E      + + + ++ +
Sbjct: 355 YVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPS 414

Query: 248 LPIYFNL 254
           +  Y +L
Sbjct: 415 VLTYSSL 421



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 82/186 (44%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           D   ++  M R G  P +    +L+   S+ G + +      Q  K GL  + ++ N+++
Sbjct: 433 DGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALI 492

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   RL +     ++   M       D+ TY +L+      G +++   LF  L  K   
Sbjct: 493 DGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFS 552

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD + + + +  + +K+     L+IF+ M   G +PD     VLI+    E  +E V  L
Sbjct: 553 PDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLEL 612

Query: 237 VRTMHK 242
           +R + K
Sbjct: 613 LREIIK 618



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 74/166 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS A  +FE +K     P   +  +L+ AY K G +     + + M + G +P+    + 
Sbjct: 641 FSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSC 700

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y +    E   E+   M     + +I +Y+ILI+   + G +E+    FQ    + 
Sbjct: 701 LIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRH 760

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           L PDV+ +   +  Y +       + +++ M+  G  PD    K L
Sbjct: 761 LLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKAL 806



 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 62/145 (42%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ AY + G++ K   V  +M K G+ P+    + ++N   R G+  +   V   + K  
Sbjct: 351 IMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQG 410

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
               + TY+ LI+ + +   +    GL+  +  K   PDVV  +  +   SR+ +    L
Sbjct: 411 LEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEAL 470

Query: 200 EIFEEMIDAGCYPDGGTAKVLISAC 224
             F + +  G   +      LI  C
Sbjct: 471 RFFFQAVKRGLTLNNYLFNALIDGC 495


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 83/193 (43%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S    D   +F EM   G+     ++  L+      G+    + V  QM   G+ PD
Sbjct: 372 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 431

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               + +L+     G+ EK  EV   M+K     DI  Y  +I    + G ++    LF 
Sbjct: 432 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 491

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
           SL  K +KP+VVT+ + ++    K+L +    + ++M + G  P+ GT   LI A   + 
Sbjct: 492 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 551

Query: 229 QIEQVTTLVRTMH 241
                  L+R M 
Sbjct: 552 DKAASAELIREMR 564



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 91/190 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  +F+EM+  GI P + ++  L++     G  +    +++ M +  + P+    N
Sbjct: 237 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 296

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ + + G+F + E++   M K S   DI TYN L+N +     ++K + +F+ + +K
Sbjct: 297 ALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK 356

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
              PDVVT+ + +  + + K      E+F EM   G   D  T   LI     +   +  
Sbjct: 357 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 416

Query: 234 TTLVRTMHKD 243
             + + M  D
Sbjct: 417 QKVFKQMVSD 426



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 75/161 (46%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ +  K  +V     +  +M   G++P+    +S+++     G++    ++L+ M +  
Sbjct: 228 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 287

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              ++ T+N LI+ + + G   + E L+  +  + + PD+ T+ S +  +       +  
Sbjct: 288 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 347

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           ++FE M+   C+PD  T   LI       ++E  T L R M
Sbjct: 348 QMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM 388



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 83/188 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SDA A+ ++M  +G  P   +   L+         ++   ++++M + G +P+      
Sbjct: 133 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 192

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N   + G  +    +L  ME     AD+  +N +I+   +   ++    LF+ +  K 
Sbjct: 193 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 252

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+VVT++S ++       +    ++  +MI+    P+  T   LI A   E +  +  
Sbjct: 253 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 312

Query: 235 TLVRTMHK 242
            L   M K
Sbjct: 313 KLYDDMIK 320



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 35/186 (18%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA  +  +M    I P + +   L+ A+ K G   + E + + M K  + PD F  NS
Sbjct: 273 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNS 332

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK------------ 162
           ++N +    + +K +++   M       D+ TYN LI  + +   +E             
Sbjct: 333 LVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG 392

Query: 163 -----------MEGLF------------QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
                      ++GLF            + + +  + PD++T++  L          + L
Sbjct: 393 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 452

Query: 200 EIFEEM 205
           E+F+ M
Sbjct: 453 EVFDYM 458



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 62/146 (42%)

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           G+   M KS   P     N +L+   ++ +F+ +  +   M++      + TYNILIN +
Sbjct: 33  GLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCF 92

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            R   I     L   +     +P +VT +S L  Y   K     + + ++M++ G  PD 
Sbjct: 93  CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 152

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
            T   LI      ++  +   LV  M
Sbjct: 153 ITFTTLIHGLFLHNKASEAVALVDRM 178



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 75/199 (37%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F  M +    P++     LL+A +K         +  +M +  +    +  N 
Sbjct: 28  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 87

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N + R  Q      +L  M K  Y   I T + L+N Y  G  I     L   +    
Sbjct: 88  LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 147

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PD +T+T+ +            + + + M+  GC P+  T  V+++        +   
Sbjct: 148 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 207

Query: 235 TLVRTMHKDMKTALPIYFN 253
            L+  M      A  + FN
Sbjct: 208 NLLNKMEAAKIEADVVIFN 226


>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
          Length = 845

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 97/213 (45%), Gaps = 3/213 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A+  F EM   GI P   ++  +++A  K GN+ +   ++  M +SGL PD +  N +
Sbjct: 546 NEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIYTSNIL 605

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   R G+ + ++ +L  M       D  TYN +IN Y R   +         +     
Sbjct: 606 IDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAGC 665

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE--DQIEQV 233
           +PD+ T+   + +  R  +  +  ++ +E++   C P+  T   L+    S+  D+   +
Sbjct: 666 EPDIFTYNIWMHSLCRNHMLNQAGKLLDELVAVDCSPNSVTYNTLMDGICSDVLDRAMIL 725

Query: 234 T-TLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
           T  L++   K     L ++ + + ++G     L
Sbjct: 726 TGRLIKMAFKPNTITLNVFLSHFCKQGFGNRAL 758



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 23/240 (9%)

Query: 17  APHSWNFNYLPYPSHFMLINF-------LLLQHT-------PNLFVFIFSIYFSDAHAV- 61
           AP S  FNYL       L N        LLL+H           F      YF D +AV 
Sbjct: 457 APSSSTFNYLIMG----LCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDAYFRDGNAVG 512

Query: 62  ----FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
               +++M  +G+     +    +    +   V +      +M   G+ P+    NS+++
Sbjct: 513 ALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSIIS 572

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G   +  +++  M +     DI T NILI+   R G ++ ++ L   + +  L P
Sbjct: 573 ALCKAGNMTEALKLVQNMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTP 632

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D VT+ + + AY R +     +    +M+ AGC PD  T  + + +      + Q   L+
Sbjct: 633 DTVTYNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLCRNHMLNQAGKLL 692



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 86/214 (40%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L  F+ +   ++A  V   ++R G TP++ +   LL    ++G V     V  +M   G 
Sbjct: 155 LHAFLAAGMAAEALDVLARVRRSGNTPSLSALSALLRLLFRSGEVRAAWNVFEEMTAEGP 214

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P     N+ML  +   G       +L  M K   A D+ +YNILI  +   G+      
Sbjct: 215 RPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIKGHCVFGWSRDAFK 274

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           +F+ +     +P VVT+   +     +        +F+EM   G   +  T  VLI   +
Sbjct: 275 MFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYA 334

Query: 226 SEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKG 259
              Q++Q +   R M           FN+   + 
Sbjct: 335 KSGQMDQASAAYREMQARGLVPDSCTFNIIAARA 368



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 35/240 (14%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +FE M R G  PT+ ++ +L+      G + +   + ++M + G++ +T   N ++
Sbjct: 271 DAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLI 330

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM---EGLFQS-LPA 172
           + Y + GQ ++       M+      D  T+NI+     + G+  ++     +F S + A
Sbjct: 331 DGYAKSGQMDQASAAYREMQARGLVPDSCTFNIIAARAHKFGYAAQLVHDHDMFSSHMSA 390

Query: 173 KRLKPDV--VTWTSRL--------------------------AAYSRKKLYRRCLEIFEE 204
             L   V  + W  RL                          AAYS++ L+    E++  
Sbjct: 391 DGLDMLVCRLCWDHRLDDAWELLLGAIEQGVPLRVTGFNALIAAYSKEGLHEEASELYRI 450

Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD---MKTALPIYFNLYGEKGVA 261
           M   G  P   T   LI    ++ ++++   L+  M      + T+  I  + Y   G A
Sbjct: 451 MNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDAYFRDGNA 510



 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 1/163 (0%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ AYSK G   +   +   M+K GL P +   N ++      G+ ++ + +L  M    
Sbjct: 431 LIAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKG 490

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y    S + I ++ Y R G        +  +    L+ D + +++ +    R        
Sbjct: 491 YCLSTS-FTICLDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAY 549

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           + F EM   G  P+  T   +ISA      + +   LV+ M +
Sbjct: 550 QAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQ 592



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 3/198 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-FVINSM 115
           +A  ++  M +LG+ P+  +   L+      G + + + ++  M   G    T F I   
Sbjct: 443 EASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTI--C 500

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+ Y R G      +    M       D   ++  IN   R   + +    F  + ++ +
Sbjct: 501 LDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAYQAFAEMTSRGI 560

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ +T+ S ++A  +       L++ + M  +G  PD  T+ +LI     E +++ V  
Sbjct: 561 VPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIYTSNILIDGLCREGKLKMVDN 620

Query: 236 LVRTMHKDMKTALPIYFN 253
           L+  M  +  T   + +N
Sbjct: 621 LLLDMCSNGLTPDTVTYN 638



 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 1/185 (0%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           L L A+   G  A+   V+ ++ +SG  P    ++++L L  R G+      V   M   
Sbjct: 153 LALHAFLAAGMAAEALDVLARVRRSGNTPSLSALSALLRLLFRSGEVRAAWNVFEEMTAE 212

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                ++T+N ++  +   G +    GL   +    + PDV ++   +  +      R  
Sbjct: 213 GPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIKGHCVFGWSRDA 272

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEK 258
            ++FE M  +GC P   T  +L+     E ++ +   L   M +       I FN+  + 
Sbjct: 273 FKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLID- 331

Query: 259 GVARS 263
           G A+S
Sbjct: 332 GYAKS 336


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 87/185 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  +MK  G  P +  +  LL+ Y+  G +A    ++  M + G +P+      ++
Sbjct: 271 EAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEPNATCYTVLI 330

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               ++ + E+  +V   ME+    AD+ TY  L++ + + G I+K   +   +  K L 
Sbjct: 331 QALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYLVLDDMIKKGLM 390

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P  +T+   +AA+ +K+    CLE+ E+M     +PD G   V+I       ++++   L
Sbjct: 391 PSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRL 450

Query: 237 VRTMH 241
              M 
Sbjct: 451 WNEME 455



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  VF EM+R      + ++  L++ + K G + KC  V++ M K GL P       +
Sbjct: 340 EEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYLVLDDMIKKGLMPSQLTYMHI 399

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  + +  +  +  E++  M++  Y  DI  YN++I +  + G +++   L+  +    L
Sbjct: 400 MAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGL 459

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY--PDGGT 216
            P   T+   +   + +       + F+EM+  G +  P  GT
Sbjct: 460 SPGADTFVIIINGLTSQGCLLEACDHFKEMVARGLFSVPQYGT 502



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 85/191 (44%), Gaps = 6/191 (3%)

Query: 55  FSDAHAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
           F     + EEM++     I P +   ++L+  ++    V K   V+++M   GL+PD +V
Sbjct: 164 FGAVWGLIEEMRKENPQLIEPEL--FVVLVQRFASADMVKKAIEVLDEMPTFGLEPDEYV 221

Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
              +L+   + G  +   ++   M +  +  ++  +  L+  + R   + + + +   + 
Sbjct: 222 FGCLLDALCKHGSVKDAAKLFEDM-RLRFPVNLRYFTSLLYGWCREEKMMEAKYVLVQMK 280

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               +PD+V +T+ L+ Y+         ++ ++M   G  P+     VLI A    D++E
Sbjct: 281 EAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEPNATCYTVLIQALCKVDRME 340

Query: 232 QVTTLVRTMHK 242
           +   +   M +
Sbjct: 341 EAMKVFVEMER 351


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F D  A+F+ M+  G+     + + +++A ++ G+ +  + ++  +    ++ D ++ N+
Sbjct: 634 FKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNT 693

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ +GR GQ +  E+V   M+      +I T N +I  Y +G  I     +F  +P   
Sbjct: 694 LVDYFGRRGQLQSAEKVFFNMK----VRNIVTMNAMIAAYAKGQDIVSARKIFDQIP--- 746

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
            K D+++W+S ++ YS+   +   LEIF +M  A   PD      ++S+C+
Sbjct: 747 -KKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCA 796



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           +++ YS+  + +    +  QM ++ +KPD  VI S+++    LG  +  + V   + + +
Sbjct: 756 MISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNN 815

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
             AD    N LI++Y + G  ++   +F+ +  K    D ++W S +   +     +  L
Sbjct: 816 IKADTIMENSLIDMYMKCGSAKEALQVFKEMKEK----DTLSWNSIIIGLANNGFEKESL 871

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            +F+ M+  G  P+G T   ++ AC++   +E+
Sbjct: 872 NLFQAMLTEGFRPNGVTFLGVLIACANAKLVEE 904



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +FSDA  +F +M+R  + P       ++++ +  G +   + V   + ++ +K DT + N
Sbjct: 765 HFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMEN 824

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S++++Y + G  ++  +V   M++     D  ++N +I      GF ++   LFQ++  +
Sbjct: 825 SLIDMYMKCGSAKEALQVFKEMKE----KDTLSWNSIIIGLANNGFEKESLNLFQAMLTE 880

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             +P+ VT+   L A +  KL    L+ FE M
Sbjct: 881 GFRPNGVTFLGVLIACANAKLVEEGLDHFESM 912



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++  Y++     +   +  +M   G+ P    + +++     +G+    E +    EK  
Sbjct: 192 MIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEG 251

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+   N LI++Y + G I+    +F  +  +R   ++V+WTS ++ ++   L  + +
Sbjct: 252 LVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRR---NLVSWTSIISGFAMHGLSVKAV 308

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           E+F +M  AG  P+  T   ++ ACS    +EQ     ++M
Sbjct: 309 ELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSM 349



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 14/211 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH VF++++     PT     +L+   +++   A       +    G+ PD      +L 
Sbjct: 505 AHKVFDQIE----APTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 560

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R+    + E++   + K    +DI   N LI++Y   G +     +F  +  K    
Sbjct: 561 ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK---- 616

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVV+W S +  YS+   ++  L +F+ M + G   D  T   ++SAC+          +V
Sbjct: 617 DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMV 676

Query: 238 RTMHKDMKTALPIYF-----NLYGEKGVARS 263
           R + +D    + +Y      + +G +G  +S
Sbjct: 677 RYI-EDYCIEVDVYLGNTLVDYFGRRGQLQS 706


>gi|7340725|emb|CAB82968.1| putative protein [Arabidopsis thaliana]
          Length = 308

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 1/214 (0%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           ++ H   L   + S+  SDA  +F  MK  G  P ++S+ +++  + K  ++       +
Sbjct: 42  IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFD 101

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
            M  SGL+PD  V   ++  +G   + + + E+L  M++  +  D  TYN LI +     
Sbjct: 102 DMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQK 161

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
             E    ++  +    ++P + T+   + +Y   + Y     +++EMI  G  PD  +  
Sbjct: 162 MPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYT 221

Query: 219 VLISACSSEDQIEQVTTLVRTM-HKDMKTALPIY 251
           VLI    SE +  +    +  M  K MKT L  Y
Sbjct: 222 VLIRGLISEGKSREACRYLEEMLDKGMKTPLIDY 255



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 4/172 (2%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
           TP M ++ +LL  + +  N+ +   + N M   GLKPD    N ML   G L   +K + 
Sbjct: 4   TPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLE--GLLRSMKKSDA 61

Query: 131 V--LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
           +     M+      ++ +Y I+I  + +   +E     F  +    L+PD   +T  +  
Sbjct: 62  IKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITG 121

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +  +K      E+ +EM + G  PDG T   LI   +++   E  T +   M
Sbjct: 122 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKM 173


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 82/184 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM   G+ P   ++   +    K GN +K  G+  +M   G  PD    N ++N
Sbjct: 436 AKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLIN 495

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +LG F+   E++  M       D  TY  +I+ +   G + K E +F  +  K + P
Sbjct: 496 GLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHP 555

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            VVT+T  + +Y+ +       + F+EM D G  P+  T   LI     E+ ++    L 
Sbjct: 556 SVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLF 615

Query: 238 RTMH 241
             M 
Sbjct: 616 AEME 619



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 87/174 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + ++M + G+ P + +  +L+  + + GN+   + + ++M   GLKPD     + + 
Sbjct: 401 AKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIV 460

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +LG   K   +   M+   +  D+ TYN+LIN   + G  +    L Q +  + + P
Sbjct: 461 GELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVP 520

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           D VT+TS + A+    L R+  E+F +M+  G +P   T  VLI + +   +++
Sbjct: 521 DHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLD 574



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 84/185 (45%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  + EEMK  G  P + ++ +L+    K GN      ++ +M   G+ PD     S+
Sbjct: 469 SKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSI 528

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ +   G   K EEV + M K      + TY +LI+ Y   G ++  +  F  +  K +
Sbjct: 529 IHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGV 588

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+V+T+ + +    ++ +      +F EM   G  P+  T  +LI+  S+    +    
Sbjct: 589 SPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALK 648

Query: 236 LVRTM 240
           L + M
Sbjct: 649 LYKDM 653



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 88/182 (48%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F DA+ + ++M+  GI P   ++  ++ A+  +G + K E V + M K G+ P       
Sbjct: 503 FDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTV 562

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y   G+ +  ++    M+    + ++ TYN LI    +   ++    LF  + +K 
Sbjct: 563 LIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKG 622

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+  T+T  +   S  + ++  L+++++M+D    PD  T   L+   S + ++  V 
Sbjct: 623 VSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKDYKLLAVL 682

Query: 235 TL 236
            L
Sbjct: 683 RL 684



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA    + M    + P + S+  L+  YS+ GN A+   + +++    L P     N++
Sbjct: 329 SDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTL 388

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   R G  +  + +   M K     D+ T+ IL+  + + G +   + LF  + ++ L
Sbjct: 389 IDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGL 448

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPD + +T+R+    +     +   + EEM   G  PD  T  VLI+        +    
Sbjct: 449 KPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANE 508

Query: 236 LVRTM 240
           LV+ M
Sbjct: 509 LVQKM 513



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A+ +  EM   G  PT+ ++  ++ +  + G V+     ++ M    L PD    N+
Sbjct: 293 FEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNT 352

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y RLG F +   + + +   +    + TYN LI+   R G ++  +G+   +    
Sbjct: 353 LIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHG 412

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           L PDVVT+T  +  + +        E+F+EM+  G  PD
Sbjct: 413 LCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPD 451



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  + E+M  LG+  +  ++  L+  + K     +   +  +M   G  P     N+
Sbjct: 258 FDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNT 317

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    RLG+       L  M       D+ +YN LI  Y R G   +   LF  L +K 
Sbjct: 318 IMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKN 377

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           L P VVT+ + +    R         + ++MI  G  PD  T  +L+
Sbjct: 378 LVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILV 424



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 67/166 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V + M+  G  P   S+ +L+   S  G   + + +I QM   GLK      N ++ 
Sbjct: 226 AVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIR 285

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +   FE+  ++   M        + TYN ++    R G +         +  + L P
Sbjct: 286 GFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMP 345

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D+V++ + +  YSR   +   L +F E+      P   T   LI  
Sbjct: 346 DLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDG 391



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 2/166 (1%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF   +       VF +M   G+ P +++   +L        V + E V + M K  ++P
Sbjct: 146 VFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRP 205

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGL 166
                N+M++   + G+  +  EVL  M       +  +YN+L+N + G+G F ++ + L
Sbjct: 206 TIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEF-DRAKEL 264

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
            + +    LK    T+   +  + +K+++    ++  EM+  G  P
Sbjct: 265 IEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALP 310



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++   V+  M +  I PT+ +   ++ +  K G V +   V++ M   G  P+    N +
Sbjct: 189 NEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVL 248

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N     G+F++ +E++  M          TYN LI  + +    E+   L + +  +  
Sbjct: 249 VNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGA 308

Query: 176 KPDVVTWTS---RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            P VVT+ +    L    R    RR L++   M++    PD  +   LI
Sbjct: 309 LPTVVTYNTIMYSLCRLGRVSDARRYLDV---MVNEDLMPDLVSYNTLI 354



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 69/152 (45%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + +T  +   + S     A  VF +M + GI P++ ++ +L+ +Y+  G +   +   ++
Sbjct: 523 VTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDE 582

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G+ P+    N+++    +    +    +   ME    + +  TY ILIN      +
Sbjct: 583 MQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQY 642

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
            +    L++ +  + +KPD  T ++ +   S+
Sbjct: 643 WQDALKLYKDMLDREIKPDSCTHSALMKHLSK 674



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 68/162 (41%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           LL+  ++K   + KC  V  +M  +GL PD    N +L L        ++EEV + M K 
Sbjct: 142 LLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKC 201

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                I T+N +++   + G + +   +   +      P+ V++   +   S K  + R 
Sbjct: 202 QIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRA 261

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            E+ E+M   G      T   LI     ++  E+   L R M
Sbjct: 262 KELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREM 303


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      +EE+   G   ++    +L+  + K G++   + V + + K GL+P     N
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYN 181

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + +AM       D+ TY++LIN   +   I+    LF  +  K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVK 241

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + +       +EI+++M+     PD  T   LI     +  ++Q 
Sbjct: 242 GLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 301

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 302 HHLIDEM 308



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           YP+     N L+ +   +  + I       A +VF+ + + G+ P++ S+  L+  Y + 
Sbjct: 138 YPASLYFFNILMHRFCKDGDIRI-------AQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G++ +   + + M  SG++PD +  + ++N   +  + +   E+   M       +  T+
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTF 250

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
             LI+ + + G ++    +++ + ++ L PD++T+ + +    +K   ++   + +EM  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSM 310

Query: 208 AGCYPDGGTAKVLISACSSEDQIE 231
            G  PD  T   LI  C  +  ++
Sbjct: 311 KGLKPDKITYTTLIDGCCKDGDLD 334



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 85/199 (42%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA+ +F+EM   G+ P   +   L+  + K G V     +  QM    L PD    N++
Sbjct: 229 DDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 288

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G  ++   ++  M       D  TY  LI+   + G ++      + +  +  
Sbjct: 289 IYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENT 348

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D V +T+ ++   R+       ++  EM+  G  PD  T  ++I+    +  + + + 
Sbjct: 349 RLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L++ M +D      + +N+
Sbjct: 409 LLKEMQRDGHVPSVVTYNV 427



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 74/172 (43%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P + ++ +L+    K   +     + ++M   GL P++    ++++ + + G+ +  
Sbjct: 207 GVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLA 266

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            E+   M   S + D+ TYN LI    + G +++   L   +  K LKPD +T+T+ +  
Sbjct: 267 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDG 326

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             +        E  + MI      D      LIS    E Q      ++R M
Sbjct: 327 CCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREM 378



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 76/166 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M    ++P + ++  L+    K G++ +   +I++M   GLKPD     ++++
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 325

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  +   E    M + +   D   Y  LI+   R G     E + + + +  LKP
Sbjct: 326 GCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKP 385

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D  T+T  +  + +K    +  ++ +EM   G  P   T  VL++ 
Sbjct: 386 DARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|255561711|ref|XP_002521865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538903|gb|EEF40501.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 449

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 100/210 (47%), Gaps = 22/210 (10%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV------------------AKCEGV 96
           +S   +V+E+MK  GI      +  ++ AY K GN                   +K E V
Sbjct: 208 YSSTISVYEKMKAAGIFMDSGGYCHIMKAYQKIGNTGKVTYASIINAYCRTGLYSKAEMV 267

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
             +M   G        +S++ +YG+ G+      ++  M+      ++  YN L++++GR
Sbjct: 268 FLEMQGKGFDKCVVAYSSIVAMYGKTGRTRDAMRLVAKMKVKGCEPNVWIYNSLLDMHGR 327

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              + ++E L++ +  +++ PD VT+TS +AAY++ K +  C+  + E    G   D   
Sbjct: 328 VKNLRQVEKLWKEMKRRKVAPDKVTYTSVIAAYNKAKEFETCVRYYHEYRFNGGVIDKAV 387

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
           A V++   S   +I+++  L+    +D+KT
Sbjct: 388 AGVMVGVFSKIGRIDELLKLL----QDIKT 413


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 27  PYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRL-------GITPTMKSHML 79
           P  +H +  + +   H P L  +   +       +F+ + RL       G+ P       
Sbjct: 29  PREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNS 88

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ A+S++GN+ +   +  +M +SG KP T   N+++  YG  G+ E+  ++L  ++ G 
Sbjct: 89  IINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGG 148

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              +  TYNIL+  +     +E+   +   + A  ++PD VT+ +   AY+ K    R  
Sbjct: 149 VKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAE 208

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           E+  EM++    P+  T  ++++    E  +   +  V  M +
Sbjct: 209 EMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKE 251



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA      MK LG+ P +     L+  +  T +    + V+  M ++G++PD    ++++
Sbjct: 241 DASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIM 300

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N +   G+ +K +E+   M K     DI  ++IL   Y R G  EK E +  S+    + 
Sbjct: 301 NAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVH 360

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+VV  T+ ++ +         ++++E+M + G  P+  T + LI       Q  +   L
Sbjct: 361 PNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEEL 420

Query: 237 VRTMHK 242
           ++ M +
Sbjct: 421 LQVMEE 426



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 7/187 (3%)

Query: 44  PNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNLFVF       + ++       V   M+  G+ P + +   ++ A+S  G + KC+ +
Sbjct: 256 PNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEI 315

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            N M K+ ++PD    + +   Y R G+ EK E +LT+M K     ++     +I+ +  
Sbjct: 316 FNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCS 375

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G +E    +++ +    + P++ T+ + +  Y   K   +  E+ + M + G +P  GT
Sbjct: 376 AGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGT 435

Query: 217 AKVLISA 223
            +++  A
Sbjct: 436 MQLIADA 442



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 84/183 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  EM    +TP  ++  +++  Y K GN+      + +M + G+ P+ FV NS++ 
Sbjct: 207 AEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIK 266

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +      E ++EVLT ME+     D+ T++ ++N +   G ++K + +F  +    ++P
Sbjct: 267 GFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEP 326

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+  ++     Y R     +   I   M   G +P+      +IS   S  ++E    + 
Sbjct: 327 DIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVY 386

Query: 238 RTM 240
             M
Sbjct: 387 EKM 389



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 4/190 (2%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
           ++S   L+      G   +   + N +   G KP      +++    R   F+ +  +++
Sbjct: 13  VRSRTKLMNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLIS 72

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            +E+     D   +N +IN +   G +++   LF+ +     KP   T+ + +  Y    
Sbjct: 73  KVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAG 132

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
                L++ E + D G  P+  T  +L+ A  +++ +E+   +V  M         + +N
Sbjct: 133 KTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYN 192

Query: 254 L----YGEKG 259
                Y EKG
Sbjct: 193 TLARAYAEKG 202


>gi|297835316|ref|XP_002885540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331380|gb|EFH61799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 841

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++  Y K+G + +      +M + G+ P T   N+M+++YG  GQF ++  ++  M K  
Sbjct: 303 MIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTM-KFH 361

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
            A D  TYNILI+++ +   IE+    F+ +    LKPD V++ + L A+S + + +   
Sbjct: 362 CAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRHMVKEAE 421

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY---FNLYG 256
           E+  EM D     D  T   L       + +E+  +  +  H     +   Y    + YG
Sbjct: 422 ELIAEMDDNDVEIDEYTQSALTRMYIEAEMLEKSWSWFKRFHVAGNMSSEGYSANIDAYG 481

Query: 257 EKG 259
           E+G
Sbjct: 482 ERG 484



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 109/238 (45%), Gaps = 46/238 (19%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V++EM    I P +  + +L+ A++ TGNV +    +  M ++G+  ++ + NS++ 
Sbjct: 593 AEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPENSVIYNSLIK 652

Query: 118 LYGRLGQFEKMEEV----LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           LY ++G  ++ E +    L +  +  Y  D+ T N +IN+Y +   + K E +F+S+  +
Sbjct: 653 LYTKVGYLDEAEAIYRKLLRSCNETQYP-DVYTSNCMINLYSQRSMVRKAEAIFESMKQR 711

Query: 174 R----------------------------------LKPDVVTWTSRLAAYSRKKLYRRCL 199
           R                                  +  D +++ S L  Y+    ++  +
Sbjct: 712 REANEFTFAMMLCMYKKNGRFEEATQIAKQMREMRILTDPLSYNSVLGLYALDGRFKEAV 771

Query: 200 EIFEEMIDAGCYPDGGTAK----VLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           E F+EM+ +G  PD  T K    +LI    S+  + ++  + +   K++K  L ++ +
Sbjct: 772 ETFKEMVSSGIQPDDSTFKSLGTILIKLGMSKKAVRKIEEIRK---KEIKRGLELWIS 826



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 7/188 (3%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
            ++++EM R GI P   ++  L+  YSK G        + +M K G++PD      +L +
Sbjct: 206 QSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQM 265

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADIS------TYNILINIYGRGGFIEKMEGLFQSLPA 172
           Y +  +F+K EE           AD        TYN +I+ YG+ G I++    F+ +  
Sbjct: 266 YKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLE 325

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           + + P  VT+ + +  Y     +     + + M    C PD  T  +LIS  +  + IE+
Sbjct: 326 EGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTM-KFHCAPDTRTYNILISLHTKNNDIER 384

Query: 233 VTTLVRTM 240
             T  + M
Sbjct: 385 AGTYFKEM 392



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 3/151 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A    E+M+  G       +  +++++ K G +   E V  +M +  ++PD  V   ++N
Sbjct: 558 AKCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLIN 617

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL---PAKR 174
            +   G  ++    + AM++     +   YN LI +Y + G++++ E +++ L     + 
Sbjct: 618 AFADTGNVQQAMSYVEAMKEAGIPENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNET 677

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
             PDV T    +  YS++ + R+   IFE M
Sbjct: 678 QYPDVYTSNCMINLYSQRSMVRKAEAIFESM 708



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 84/192 (43%), Gaps = 11/192 (5%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE M   G+TP   ++  L+   +      K +  + +M ++G   D     ++++
Sbjct: 523 ACELFESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYVSDCIPYCAVIS 582

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +LGQ    EEV   M + +   D+  Y +LIN +   G +++     +++    +  
Sbjct: 583 SFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPE 642

Query: 178 DVVTWTSRLAAYSR-------KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
           + V + S +  Y++       + +YR+ L    E      YPD  T+  +I+  S    +
Sbjct: 643 NSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNETQ----YPDVYTSNCMINLYSQRSMV 698

Query: 231 EQVTTLVRTMHK 242
            +   +  +M +
Sbjct: 699 RKAEAIFESMKQ 710



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 34/221 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +  ++ + MK     P  +++ +L++ ++K  ++ +      +M  +GLKPD     +
Sbjct: 348 FGEVTSLMKTMK-FHCAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAGLKPDPVSYRT 406

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL---- 170
           +L  +      ++ EE++  M+      D  T + L  +Y     +EK    F+      
Sbjct: 407 LLYAFSIRHMVKEAEELIAEMDDNDVEIDEYTQSALTRMYIEAEMLEKSWSWFKRFHVAG 466

Query: 171 ---------------------PAKRL--------KPDVVTWTSRLAAYSRKKLYRRCLEI 201
                                 A+R+        K  V+ +   + AY   K   +  E+
Sbjct: 467 NMSSEGYSANIDAYGERGYLSEAERVFICCQEVNKRTVLEYNVMIKAYGISKSCEKACEL 526

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           FE M+  G  PD  T   L+   +S D  ++    +  M +
Sbjct: 527 FESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRE 567



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 3/149 (2%)

Query: 42  HTPNLFVFIFS--IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           +T N  + ++S       A A+FE MK+        +  ++L  Y K G   +   +  Q
Sbjct: 683 YTSNCMINLYSQRSMVRKAEAIFESMKQRREANEF-TFAMMLCMYKKNGRFEEATQIAKQ 741

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  +  D    NS+L LY   G+F++  E    M       D ST+  L  I  + G 
Sbjct: 742 MREMRILTDPLSYNSVLGLYALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILIKLGM 801

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            +K     + +  K +K  +  W S L++
Sbjct: 802 SKKAVRKIEEIRKKEIKRGLELWISTLSS 830



 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 45/232 (19%), Positives = 99/232 (42%), Gaps = 16/232 (6%)

Query: 42  HTPNLFVFIFSIYFSDAHAVF----EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           ++ N+  +    Y S+A  VF    E  KR     T+  + +++ AY  + +  K   + 
Sbjct: 473 YSANIDAYGERGYLSEAERVFICCQEVNKR-----TVLEYNVMIKAYGISKSCEKACELF 527

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
             M   G+ PD    N+++ +       +K +  L  M +  Y +D   Y  +I+ + + 
Sbjct: 528 ESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYVSDCIPYCAVISSFVKL 587

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G +   E +++ +    ++PDVV +   + A++     ++ +   E M +AG   +    
Sbjct: 588 GQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPENSVIY 647

Query: 218 KVLISACSSEDQIEQVTTLVRTMHKDM-KTALPIYF------NLYGEKGVAR 262
             LI   +    +++   + R + +   +T  P  +      NLY ++ + R
Sbjct: 648 NSLIKLYTKVGYLDEAEAIYRKLLRSCNETQYPDVYTSNCMINLYSQRSMVR 699


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 85/165 (51%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A+ + +EMK +GI P + ++  LL+   K G+ A  + ++ +M   G +P      +++
Sbjct: 406 EAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLV 465

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y ++G+ ++   +L +M++     +   YN LI+   + G ++    LF  +  K + 
Sbjct: 466 HGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVP 525

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            +V T+ + L     K +  +  E+ ++M +  C+PD  T  VL+
Sbjct: 526 ANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLM 570



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F +   V+ E K   +T     +  L+ A   T NV     + ++    G  PD  +  
Sbjct: 303 FFREKRTVWPEGKGNAVT-----YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYF 357

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M++   + G+ E    + ++M++  +  D   YNILI  + R   + +   L Q +   
Sbjct: 358 TMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEV 417

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++PDV T+ + L+   +   +    E+  +MID GC P   T   L+       +I++ 
Sbjct: 418 GIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEA 477

Query: 234 TTLVRTMHK 242
             ++R+M +
Sbjct: 478 LRILRSMDE 486



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/209 (18%), Positives = 94/209 (44%), Gaps = 7/209 (3%)

Query: 42  HTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H+P+  ++   I          DA ++   MK  G     K++ +L+  + +   + +  
Sbjct: 349 HSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAY 408

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ +M + G++PD    N++L+   + G F  ++E+L  M        + T+  L++ Y
Sbjct: 409 ELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGY 468

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G I++   + +S+    + P+ V + + +    ++      +E+F+EM +     + 
Sbjct: 469 CKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANV 528

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            T   L+     ++  E+   L+  M ++
Sbjct: 529 TTFNALLKGLRDKNMPEKAFELMDQMREE 557



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 80/196 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F E    G +P    +  +++  ++ G +     + + M ++G K DT   N ++ 
Sbjct: 337 AMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIA 396

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R  +  +  E+L  M++     D+ TYN L++   + G    ++ L   +     +P
Sbjct: 397 GFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQP 456

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V+T+ + +  Y +       L I   M ++G +P+      LI        ++    L 
Sbjct: 457 SVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELF 516

Query: 238 RTMHKDMKTALPIYFN 253
             M +    A    FN
Sbjct: 517 DEMKEKSVPANVTTFN 532



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 12/195 (6%)

Query: 57  DAHAVFEEMKR--LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS--GLKPDTFVI 112
           DA  V + M R  L I P + +   ++    K+G V +    + Q   S  G  P+T   
Sbjct: 190 DALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTY 249

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +++ + R+G      E++  ME      +I T N ++    R G        F+    
Sbjct: 250 NCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE--- 306

Query: 173 KRL-----KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           KR      K + VT+++ + A          +E+F E +  G  PD      +IS  +  
Sbjct: 307 KRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQA 366

Query: 228 DQIEQVTTLVRTMHK 242
            ++E   ++  +M +
Sbjct: 367 GRLEDACSMASSMKE 381



 Score = 43.9 bits (102), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 5/141 (3%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGL 166
           D F  NS+L    R+     M  +   M+   S   D+ TY IL+N   + G +     +
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRV 194

Query: 167 FQSLPAKRL--KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA--GCYPDGGTAKVLIS 222
              +  + L  +PDVVT  + +    +    +  L   E+ + +  GC P+  T   LI 
Sbjct: 195 LDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLID 254

Query: 223 ACSSEDQIEQVTTLVRTMHKD 243
           A      I     LV  M  +
Sbjct: 255 AFCRVGNISMAYELVEKMENE 275


>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 426

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 94/187 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR GITP   ++  ++  + K     +   +I++M  +G+ PDT   ++
Sbjct: 60  YSKAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYST 119

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V   M +   + D++T NI+I++YG+    ++ + LF S+    
Sbjct: 120 LLTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIG 179

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+V+++ + L  Y   +L+   + +F  M       +  T   ++       + E+  
Sbjct: 180 IEPNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 235 TLVRTMH 241
            L++ MH
Sbjct: 240 NLIQEMH 246



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 92/194 (47%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF  +  F +A ++  EMK  G+ P   S+  LLT Y +     +   V  +M +     
Sbjct: 88  VFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCSL 147

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D    N M+++YG+L   ++ +++  +M K     ++ +YN L+ +YG      +   LF
Sbjct: 148 DLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTLLRVYGDAELFGEAIHLF 207

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           + +  K ++ +VVT+ + +  Y +   + +   + +EM + G  P+  T   +IS     
Sbjct: 208 RLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNXGIEPNAITYSTIISIWGKV 267

Query: 228 DQIEQVTTLVRTMH 241
            ++++   L + + 
Sbjct: 268 GKLDRAAXLFQKLR 281



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    N+M+
Sbjct: 167 EADKLFWSMRKIGIEPNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMM 226

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M       +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 227 MIYGKTLEHEKANNLIQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVE 286

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D V + + + AY R  L      +  E+      P      +L  A     +IE+ T +
Sbjct: 287 IDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAXHILAGAG----RIEEATWV 342

Query: 237 VR 238
            R
Sbjct: 343 FR 344



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/177 (19%), Positives = 77/177 (43%)

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
           +   ++P   ++  L+T + K G        +  M +  +  D  + ++++ L  +L  +
Sbjct: 1   RZRALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
            K   + + +++     D   YN +IN++G+    ++   L   +    + PD V++++ 
Sbjct: 61  SKAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTL 120

Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           L  Y   + +   L +F EM +  C  D  T  ++I      D  ++   L  +M K
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRK 177



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 84/169 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +  +  + +  +++  Y +     + + +   M K G++P+    N+
Sbjct: 130 FLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNT 189

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   L Q +    
Sbjct: 190 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNXG 249

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 250 IEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVA 298



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +MH  G++P+    ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNXGIEPNAITYST 259

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G++G+ ++   +   +       D   Y  +I  Y R G +   + L   L    
Sbjct: 260 IISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELK--- 316

Query: 175 LKPDVV------------------TWTSRLAA-----------------YSRKKLYRRCL 199
            +PD +                  TW  R A                  +S+ K Y   +
Sbjct: 317 -RPDNIPRDTAXHILAGAGRIEEATWVFRQAIDAGEVKDITVFSRMIDLFSKYKKYANVV 375

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F++M   G +PD     ++++A
Sbjct: 376 EVFDKMRGLGYFPDSNVIALVLNA 399


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 85/165 (51%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A+ + +EMK +GI P + ++  LL+   K G+ A  + ++ +M   G +P      +++
Sbjct: 406 EAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLV 465

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y ++G+ ++   +L +M++     +   YN LI+   + G ++    LF  +  K + 
Sbjct: 466 HGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVP 525

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            +V T+ + L     K +  +  E+ ++M +  C+PD  T  VL+
Sbjct: 526 ANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLM 570



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F +   V+ E K   +T     +  L+ A   T NV     + ++    G  PD  +  
Sbjct: 303 FFREKRTVWPEGKGNAVT-----YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYF 357

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M++   + G+ E    + ++M++  +  D   YNILI  + R   + +   L Q +   
Sbjct: 358 TMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEV 417

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++PDV T+ + L+   +   +    E+  +MID GC P   T   L+       +I++ 
Sbjct: 418 GIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEA 477

Query: 234 TTLVRTMHK 242
             ++R+M +
Sbjct: 478 LRILRSMDE 486



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/209 (18%), Positives = 94/209 (44%), Gaps = 7/209 (3%)

Query: 42  HTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           H+P+  ++   I          DA ++   MK  G     K++ +L+  + +   + +  
Sbjct: 349 HSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAY 408

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            ++ +M + G++PD    N++L+   + G F  ++E+L  M        + T+  L++ Y
Sbjct: 409 ELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGY 468

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G I++   + +S+    + P+ V + + +    ++      +E+F+EM +     + 
Sbjct: 469 CKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANV 528

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKD 243
            T   L+     ++  E+   L+  M ++
Sbjct: 529 TTFNALLKGLRDKNMPEKAFELMDQMREE 557



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 80/196 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F E    G +P    +  +++  ++ G +     + + M ++G K DT   N ++ 
Sbjct: 337 AMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIA 396

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R  +  +  E+L  M++     D+ TYN L++   + G    ++ L   +     +P
Sbjct: 397 GFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQP 456

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V+T+ + +  Y +       L I   M ++G +P+      LI        ++    L 
Sbjct: 457 SVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELF 516

Query: 238 RTMHKDMKTALPIYFN 253
             M +    A    FN
Sbjct: 517 DEMKEKSVPANVTTFN 532



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 12/195 (6%)

Query: 57  DAHAVFEEMKR--LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS--GLKPDTFVI 112
           DA  V + M R  L I P + +   ++    K+G V +    + Q   S  G  P+T   
Sbjct: 190 DALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTY 249

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           N +++ + R+G      E++  ME      +I T N ++    R G        F+    
Sbjct: 250 NCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE--- 306

Query: 173 KRL-----KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           KR      K + VT+++ + A          +E+F E +  G  PD      +IS  +  
Sbjct: 307 KRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQA 366

Query: 228 DQIEQVTTLVRTMHK 242
            ++E   ++  +M +
Sbjct: 367 GRLEDACSMASSMKE 381



 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 5/141 (3%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGL 166
           D F  NS+L    R+     M  +   M+   S   D+ TY IL+N   + G +     +
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRV 194

Query: 167 FQSLPAKRL--KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA--GCYPDGGTAKVLIS 222
              +  + L  +PDVVT  + +    +    +  L   E+ + +  GC P+  T   LI 
Sbjct: 195 LDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLID 254

Query: 223 ACSSEDQIEQVTTLVRTMHKD 243
           A      I     LV  M  +
Sbjct: 255 AFCRVGNISMAYELVEKMENE 275


>gi|115529193|dbj|BAF34329.1| pentatricopeptide repeat protein [Physcomitrella patens]
 gi|115529195|dbj|BAF34330.1| pentatricopeptide repeat protein [Physcomitrella patens]
          Length = 513

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 76/170 (44%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + SDA  VF+ M   G    +K+   LL AYS   + A  E V   +  +GLKPD   + 
Sbjct: 293 HASDAQRVFDRMHLKGFRGDLKAFTALLEAYSNAQDYANAELVFQSLRAAGLKPDDRALA 352

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           SM+++Y +     +  EV+  +E         T   LI  +G+ G +E+ +  FQ L  K
Sbjct: 353 SMVSVYAKANMLNRAAEVIVELEGAGMRFGPVTLTSLIGWFGKAGLVEEAKHCFQELKRK 412

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           RL      + +  AAY+R         I+  + +AG   D     V+  A
Sbjct: 413 RLPISGKAYANMFAAYARAGELETAGSIWASIEEAGIELDHRECAVMAEA 462



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 86/181 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+  GI   + +  +L+ AY +   + K + V+  +  +GL+ D     +++
Sbjct: 191 EAEQMFRIMEERGIPADLGAFTVLIAAYGRAKMLEKVKQVLQDVSLAGLELDAVFYKTVI 250

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             YG +G  ++ E+VL++ME          Y  L+N YGR G     + +F  +  K  +
Sbjct: 251 VAYGSVGMPKEAEDVLSSMESAGVPDGKDAYLALLNAYGRLGHASDAQRVFDRMHLKGFR 310

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+  +T+ L AYS  + Y     +F+ +  AG  PD      ++S  +  + + +   +
Sbjct: 311 GDLKAFTALLEAYSNAQDYANAELVFQSLRAAGLKPDDRALASMVSVYAKANMLNRAAEV 370

Query: 237 V 237
           +
Sbjct: 371 I 371



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V +++   G+      +  ++ AY   G   + E V++ M  +G+        ++LN YG
Sbjct: 230 VLQDVSLAGLELDAVFYKTVIVAYGSVGMPKEAEDVLSSMESAGVPDGKDAYLALLNAYG 289

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           RLG     + V   M    +  D+  +  L+  Y         E +FQSL A  LKPD  
Sbjct: 290 RLGHASDAQRVFDRMHLKGFRGDLKAFTALLEAYSNAQDYANAELVFQSLRAAGLKPDDR 349

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
              S ++ Y++  +  R  E+  E+  AG
Sbjct: 350 ALASMVSVYAKANMLNRAAEVIVELEGAG 378



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
           G++    ++G++  T +I+     YGR G   + E++   ME+    AD+  + +LI  Y
Sbjct: 163 GLLQSWFEAGVRDYTKLIDK----YGREGNVVEAEQMFRIMEERGIPADLGAFTVLIAAY 218

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
           GR   +EK++ + Q +    L+ D V + + + AY    + +   ++   M  AG  PDG
Sbjct: 219 GRAKMLEKVKQVLQDVSLAGLELDAVFYKTVIVAYGSVGMPKEAEDVLSSMESAGV-PDG 277

Query: 215 GTA 217
             A
Sbjct: 278 KDA 280



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/154 (18%), Positives = 70/154 (45%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +++A  VF+ ++  G+ P  ++   +++ Y+K   + +   VI ++  +G++     + S
Sbjct: 329 YANAELVFQSLRAAGLKPDDRALASMVSVYAKANMLNRAAEVIVELEGAGMRFGPVTLTS 388

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  +G+ G  E+ +     +++         Y  +   Y R G +E    ++ S+    
Sbjct: 389 LIGWFGKAGLVEEAKHCFQELKRKRLPISGKAYANMFAAYARAGELETAGSIWASIEEAG 448

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           ++ D         A    K++ + +EIF E + A
Sbjct: 449 IELDHRECAVMAEALLAGKVHEQSVEIFFEALQA 482



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 4/126 (3%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           + A +  Y  LI+ YGR G + + E +F+ +  + +  D+  +T  +AAY R K+  +  
Sbjct: 169 FEAGVRDYTKLIDKYGREGNVVEAEQMFRIMEERGIPADLGAFTVLIAAYGRAKMLEKVK 228

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK----DMKTALPIYFNLY 255
           ++ +++  AG   D    K +I A  S    ++   ++ +M      D K A     N Y
Sbjct: 229 QVLQDVSLAGLELDAVFYKTVIVAYGSVGMPKEAEDVLSSMESAGVPDGKDAYLALLNAY 288

Query: 256 GEKGVA 261
           G  G A
Sbjct: 289 GRLGHA 294


>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
 gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
           thaliana]
          Length = 447

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 90/170 (52%), Gaps = 1/170 (0%)

Query: 55  FSDAHAVFEEMKRLGIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           F +  +V  +M   G + P + +   ++ +Y    N+ K E   ++    G++PD    N
Sbjct: 216 FEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFN 275

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  +G+ G ++KM  V+  MEK  ++    TYNI+I  +G+ G IEKM+ +F+ +  +
Sbjct: 276 ILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQ 335

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +KP+ +T+ S + AYS+  L  +   +  +++++    D      +I+A
Sbjct: 336 GVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINA 385



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 90/180 (50%), Gaps = 7/180 (3%)

Query: 37  FLLLQHTPNLFVF-IFSIYFSDAH------AVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           F L+   P++  F I  + F  A       +V + M++   + T  ++ +++  + K G 
Sbjct: 262 FQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGR 321

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           + K + V  +M   G+KP++    S++N Y + G   K++ VL  +       D   +N 
Sbjct: 322 IEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNC 381

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +IN YG+ G +  M+ L+  +  ++ KPD +T+ + +  Y+   ++    E+ ++MI +G
Sbjct: 382 IINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSG 441



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 12/228 (5%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P++F F   I        F    ++  EM  LG+  +  ++  ++  Y K G   + E V
Sbjct: 163 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 222

Query: 97  INQMHKSGLK-PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +  M + G   PD   +NS++  YG      KME   +  +      DI+T+NILI  +G
Sbjct: 223 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 282

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  +KM  +   +  +      VT+   +  + +     +  ++F +M   G  P+  
Sbjct: 283 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 342

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIY---FNLYGEKG 259
           T   L++A S    + ++ +++R + + D+    P +    N YG+ G
Sbjct: 343 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAG 390



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 2/202 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSML 116
           A  +FE M   G+ PT+  +  L++ Y K+  + K    +  M   S  KPD F    ++
Sbjct: 113 ASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +LG+F+ ++ ++  M          TYN +I+ YG+ G  E+ME +   +      
Sbjct: 173 SCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDS 232

Query: 177 -PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T  S + +Y   +  R+    +      G  PD  T  +LI +       +++ +
Sbjct: 233 LPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCS 292

Query: 236 LVRTMHKDMKTALPIYFNLYGE 257
           ++  M K   +   + +N+  E
Sbjct: 293 VMDFMEKRFFSLTTVTYNIVIE 314



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 80/179 (44%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +   + +G+ P + +  +L+ ++ K G   K   V++ M K      T   N ++  +G+
Sbjct: 259 YSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGK 318

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+ EKM++V   M+      +  TY  L+N Y + G + K++ + + +    +  D   
Sbjct: 319 AGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPF 378

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +   + AY +        E++ +M +  C PD  T   +I   ++    + V  L + M
Sbjct: 379 FNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQM 437



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y     TY  L  + G     ++   LF+ + ++ LKP +  +TS ++ Y + +L  +  
Sbjct: 90  YEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAF 149

Query: 200 EIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              E M   + C PD  T  VLIS C    + + V ++V  M
Sbjct: 150 STLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEM 191


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 1/189 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +F ++    I P   +  +L+  + K   + + + V   M K G+ PD    NS
Sbjct: 128 LKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNS 187

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  + +    + +   M +G    DI +YNILIN + +   ++K   LF  +  K 
Sbjct: 188 LVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKN 247

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+VVT+ S +   S+       L++ ++M D G  P+  T   +I A     Q+++  
Sbjct: 248 IIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAI 307

Query: 235 TLVRTMHKD 243
            L+ T  KD
Sbjct: 308 ALI-TKFKD 315



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 86/188 (45%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           + +DA  ++ EM   GI+P + ++  L++ +   G +     + N++    +KPD +  N
Sbjct: 92  HVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFN 151

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ + +  + ++ + V   M K     D+ TYN L++ Y     +   + +F ++   
Sbjct: 152 ILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQG 211

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + PD+ ++   +  + + K   + + +F EM      P+  T   LI   S   +I   
Sbjct: 212 GVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYA 271

Query: 234 TTLVRTMH 241
             LV  MH
Sbjct: 272 LQLVDQMH 279



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 73/167 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +   VF  M + GI P + ++  L+  Y     V   + + N M + G+ PD    N ++
Sbjct: 165 EGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILI 224

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N + ++ + +K   +   M   +   ++ TYN LI+   + G I     L   +  + + 
Sbjct: 225 NGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVP 284

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           P+++T+ S + A  +     + + +  +  D G  P   T  +LI  
Sbjct: 285 PNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDG 331



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 69/148 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++F  M + G+ P ++S+ +L+  + K   V K   + N+MH   + P+    NS+++
Sbjct: 201 AKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLID 260

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+     +++  M       +I TYN +I+   +   ++K   L      + ++P
Sbjct: 261 GLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQP 320

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            + T+T  +    +    +    IFE++
Sbjct: 321 SMYTYTILIDGLCKGGRLKDARNIFEDL 348


>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 499

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 90/170 (52%), Gaps = 1/170 (0%)

Query: 55  FSDAHAVFEEMKRLGIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           F +  +V  +M   G + P + +   ++ +Y    N+ K E   ++    G++PD    N
Sbjct: 266 FEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFN 325

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  +G+ G ++KM  V+  MEK  ++    TYNI+I  +G+ G IEKM+ +F+ +  +
Sbjct: 326 ILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQ 385

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +KP+ +T+ S + AYS+  L  +   +  +++++    D      +I+A
Sbjct: 386 GVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINA 435



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 89/179 (49%), Gaps = 7/179 (3%)

Query: 37  FLLLQHTPNLFVF-IFSIYFSDAH------AVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
           F L+   P++  F I  + F  A       +V + M++   + T  ++ +++  + K G 
Sbjct: 312 FQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGR 371

Query: 90  VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
           + K + V  +M   G+KP++    S++N Y + G   K++ VL  +       D   +N 
Sbjct: 372 IEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNC 431

Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           +IN YG+ G +  M+ L+  +  ++ KPD +T+ + +  Y+   ++    E+ ++MI +
Sbjct: 432 IINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISS 490



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 12/228 (5%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P++F F   I        F    ++  EM  LG+  +  ++  ++  Y K G   + E V
Sbjct: 213 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 272

Query: 97  INQMHKSGLK-PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +  M + G   PD   +NS++  YG      KME   +  +      DI+T+NILI  +G
Sbjct: 273 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 332

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G  +KM  +   +  +      VT+   +  + +     +  ++F +M   G  P+  
Sbjct: 333 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 392

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIY---FNLYGEKG 259
           T   L++A S    + ++ +++R + + D+    P +    N YG+ G
Sbjct: 393 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAG 440



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 2/202 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSML 116
           A  +FE M   G+ PT+  +  L++ Y K+  + K    +  M   S  KPD F    ++
Sbjct: 163 ASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 222

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +LG+F+ ++ ++  M          TYN +I+ YG+ G  E+ME +   +      
Sbjct: 223 SCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDS 282

Query: 177 -PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV T  S + +Y   +  R+    +      G  PD  T  +LI +       +++ +
Sbjct: 283 LPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCS 342

Query: 236 LVRTMHKDMKTALPIYFNLYGE 257
           ++  M K   +   + +N+  E
Sbjct: 343 VMDFMEKRFFSLTTVTYNIVIE 364



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 80/179 (44%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           +   + +G+ P + +  +L+ ++ K G   K   V++ M K      T   N ++  +G+
Sbjct: 309 YSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGK 368

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+ EKM++V   M+      +  TY  L+N Y + G + K++ + + +    +  D   
Sbjct: 369 AGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPF 428

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +   + AY +        E++ +M +  C PD  T   +I   ++    + V  L + M
Sbjct: 429 FNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQM 487



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y     TY  L  + G     ++   LF+ + ++ LKP +  +TS ++ Y + +L  +  
Sbjct: 140 YEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAF 199

Query: 200 EIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              E M   + C PD  T  VLIS C    + + V ++V  M
Sbjct: 200 STLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEM 241


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 73  TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL 132
            ++S  ++++ Y   GN  K   V +QM   G++PD     S+L+   +L   EK +++ 
Sbjct: 373 VVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIH 432

Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
            ++ +     D    + L+++Y + G +++   +F S+P    K DVV+WT  ++AY   
Sbjct: 433 LSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIP----KKDVVSWTVMISAYGSH 488

Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
              R  L  F+EM   G  PDG T   ++SAC     I++
Sbjct: 489 GQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDE 528



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 8/171 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F D+  VF+EM    +     S   +++++ + G+  K   +  +M +S  +P++  I  
Sbjct: 157 FEDSVQVFDEMPERDVA----SWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSITV 212

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            ++   RL   E+ +E+     K  +  D    + L+++YGR  F+E    +FQ +  K 
Sbjct: 213 AISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKS 272

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           L    V W S +  Y  +   + C+E+   MI  G  P   T   ++ ACS
Sbjct: 273 L----VAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACS 319



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
           PD+F   +++  YG LG+      + T + K  +  D+   + L+ +Y +    E    +
Sbjct: 104 PDSFTYPNVIKAYGALGREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQV 163

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           F  +P +    DV +W + ++++ ++    + LE+F  M  +   P+  +  V ISACS
Sbjct: 164 FDEMPER----DVASWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACS 218



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+++M  +G+ P + +   +L+  S+   + K + +   + +S L+ D  +++++L++Y 
Sbjct: 396 VYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYS 455

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G  ++   +  ++ K     D+ ++ ++I+ YG  G   +    F  +    +KPD V
Sbjct: 456 KCGNVKEASRIFNSIPK----KDVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGV 511

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEM 205
           T+ + L+A     L    ++ F +M
Sbjct: 512 TFLAVLSACGHAGLIDEGVKYFSQM 536



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 97/212 (45%), Gaps = 7/212 (3%)

Query: 57  DAHAVFEEMKRL---GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           D+ +  E + R+   G  P+  +   +L A S++ N+   + V   + +S +  D ++  
Sbjct: 288 DSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINC 347

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++LY + G+ +  E V    +K      + ++N++I+ Y   G   K   ++  + + 
Sbjct: 348 SLIDLYFKCGEVKLAETVFLKTQKDV----VESWNVMISGYVSVGNWFKAVDVYDQMVSV 403

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            ++PD+VT+TS L+  S+     +  +I   + ++    D      L+   S    +++ 
Sbjct: 404 GVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEA 463

Query: 234 TTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
           + +  ++ K    +  +  + YG  G  R  L
Sbjct: 464 SRIFNSIPKKDVVSWTVMISAYGSHGQPREAL 495


>gi|168004577|ref|XP_001754988.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694092|gb|EDQ80442.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 437

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 16/201 (7%)

Query: 29  PSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG 88
           PS F+L N LL     N+++   SI  +DA  VF+ M+       M +  ++LT Y++ G
Sbjct: 8   PSTFVL-NALL-----NMYMKCGSI--TDARQVFDNMRE----RDMFTWTMMLTGYARLG 55

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
           ++ +   V  QM +  L  D     ++L++   L   EK ++V   M K    +D    N
Sbjct: 56  HLEEAYRVYEQMLEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGN 115

Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            LI++Y + G I +   +F  +  +    DVVTW   +A  +R   +    E+FE M +A
Sbjct: 116 TLIDMYAKCGNIRQGHTMFTEMKDR----DVVTWNIIIAGAARNGYFDEAFELFEAMREA 171

Query: 209 GCYPDGGTAKVLISACSSEDQ 229
           G  PD  T   +++ CSS +Q
Sbjct: 172 GLKPDKVTYVCVLNVCSSLEQ 192



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 8/155 (5%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M  SG  P TFV+N++LN+Y + G      +V   M +     D+ T+ +++  Y R G 
Sbjct: 1   MENSGFVPSTFVLNALLNMYMKCGSITDARQVFDNMRE----RDMFTWTMMLTGYARLGH 56

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           +E+   +++ +  +RL  D VT+T+ L+  +  +   +  ++  +MI AG + D      
Sbjct: 57  LEEAYRVYEQMLEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNT 116

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           LI   +    I Q      TM  +MK    + +N+
Sbjct: 117 LIDMYAKCGNIRQ----GHTMFTEMKDRDVVTWNI 147



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 10/172 (5%)

Query: 55  FSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
             DA  +FE++ +R  +T T      ++ AY++ G   K      +M K G+  D F   
Sbjct: 225 LEDALQIFEKLPERNLVTWTS-----VIAAYAQAGIPEKAWIFYEKMLKEGIVADKFAYT 279

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++L++   +G  EK ++V   M K   A D    + LI++Y + G  +    L + +  +
Sbjct: 280 TVLHVCATMGDLEKGKQVHDHMVKSGIATDQILDSTLIDMYAKCGRTDIAHQLLEIMDER 339

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
               DVV++T+ +  + R+  ++  L+ F  M   G  P+  T   ++ AC+
Sbjct: 340 ----DVVSYTALIVGHVRQGRFQEALQTFSSMQRDGVLPNTVTFVGVLKACT 387



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 11/175 (6%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
            H +F EMK   +     +  +++   ++ G   +   +   M ++GLKPD      +LN
Sbjct: 130 GHTMFTEMKDRDVV----TWNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLN 185

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +   L Q   +   +  +E G    D+     L+N+Y     +E    +F+ LP + L  
Sbjct: 186 VCSSLEQGRILHSYI--IEAG-LELDLWVGTALLNMYSNCRSLEDALQIFEKLPERNL-- 240

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             VTWTS +AAY++  +  +    +E+M+  G   D      ++  C++   +E+
Sbjct: 241 --VTWTSVIAAYAQAGIPEKAWIFYEKMLKEGIVADKFAYTTVLHVCATMGDLEK 293


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 2/180 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V++ M + G+ P +  +  L+ A SK+ +V + E ++N+M   G+ PD F  N+++ LY 
Sbjct: 187 VYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYC 246

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           + G   +   V   ME+     DI +YN LI  + + G + +   +F  +  K   P+ V
Sbjct: 247 KKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEI--KDAIPNHV 304

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           T+T+ +  Y +   +   L + E M+  G YP   T   ++    S+ +I     L+  M
Sbjct: 305 TYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEM 364



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 2/184 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VFE+M    + P + +  +L+ +  K G  +    V  +M + G+ P+ +V N ++
Sbjct: 148 DAVQVFEQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLI 207

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   +    E+ E +L  ME      DI TYN LI +Y + G   +   +   +  + + 
Sbjct: 208 HACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGIN 267

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+V++ S +  + ++   R  + +F E+ DA   P+  T   LI      ++ E+   L
Sbjct: 268 LDIVSYNSLIYGFCKEGKMREAMRMFGEIKDA--IPNHVTYTTLIDGYCKANEFEEALRL 325

Query: 237 VRTM 240
              M
Sbjct: 326 REMM 329



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 6/192 (3%)

Query: 60  AVFEEMKRLGITPTMKSHML--LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           +V   + R+   P + SH+L  ++  Y+K+        V  QM    LKP       ++N
Sbjct: 114 SVLTSLVRIHDDPEVNSHVLSWIVIHYAKSKMTHDAVQVFEQMSLCNLKPHLHACTVLMN 173

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G    + +V   M +     +I  YN LI+   +   +E+ E +   +  K + P
Sbjct: 174 SLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVP 233

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + +A Y +K L+   L + ++M   G   D  +   LI     E ++ +     
Sbjct: 234 DIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAM--- 290

Query: 238 RTMHKDMKTALP 249
             M  ++K A+P
Sbjct: 291 -RMFGEIKDAIP 301



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 8/187 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +V ++M+R GI   + S+  L+  + K G + +   +  ++  +   P+     +++
Sbjct: 253 EALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEIKDA--IPNHVTYTTLI 310

Query: 117 NLYGRLGQFE---KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           + Y +  +FE   ++ E++ A  KG Y   + TYN ++      G I     L   +  +
Sbjct: 311 DGYCKANEFEEALRLREMMVA--KGLYPG-VVTYNSILRKLCSDGRIRDANKLLHEMSER 367

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           +++ D VT  + + AY +       L+   +M++AG  P+  T K LI       ++E  
Sbjct: 368 KVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESA 427

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 428 KELLFGM 434



 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 35/186 (18%), Positives = 79/186 (42%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  + E M   G+ P + ++  +L      G +     ++++M +  ++ D+   N+
Sbjct: 319 FEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNT 378

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N Y ++G      +  T M +     +  TY  LI+ + +   +E  + L   +    
Sbjct: 379 LINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESAKELLFGMLDAG 438

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+  T++  + +Y +K      L + +E +  G   +    + LI      ++IE   
Sbjct: 439 FSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLCKIERIECAE 498

Query: 235 TLVRTM 240
            L+  M
Sbjct: 499 KLLYHM 504



 Score = 37.0 bits (84), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 35/184 (19%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA+ +  EM    +     +   L+ AY K G++        +M ++GL P++F   +++
Sbjct: 356 DANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALI 415

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAAD--------------------------------- 143
           + + +  + E  +E+L  M    ++ +                                 
Sbjct: 416 HGFCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFC 475

Query: 144 --ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
             IS Y  LI    +   IE  E L   +  K +  D V +TS   +Y +        ++
Sbjct: 476 LNISLYRALIRRLCKIERIECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDM 535

Query: 202 FEEM 205
            EEM
Sbjct: 536 LEEM 539


>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
 gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
          Length = 410

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 29/225 (12%)

Query: 10  DLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLG 69
           DL  AQR      F+ LP+P+ F   N L+  +  +      SI     H V  +M++ G
Sbjct: 12  DLAYAQRL-----FDQLPHPNTF-FYNTLIRGYAKS------SIPSYSLHLV-NQMRQNG 58

Query: 70  ITPTMKSHMLLLTAYSKTGN--------VAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           + P   +   L+ A S+           V +C+ +   + K G     FV N++++LY  
Sbjct: 59  VDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAA 118

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G       V       +   D+ +++ L+  + R G +E+   +F  +P +    DVV+
Sbjct: 119 RGNPVVAWRVFDE----TVGVDVVSWSGLVLAHVRAGELERARWVFDQMPER----DVVS 170

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           WT+ ++AYS+ K  R  LE++  M+D G  PD  T   +ISAC++
Sbjct: 171 WTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTN 215



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 87/186 (46%), Gaps = 8/186 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M    +     S   +++AYS+     +   +   M   G++PD   + S+++
Sbjct: 156 ARWVFDQMPERDVV----SWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVIS 211

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               LG  +    V + +++  +   +S  N LI++Y + G +++   +F S+  K L  
Sbjct: 212 ACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSL-- 269

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             VTW S ++A +  +       +F  M + G  PDG T   +++A +    +++   L 
Sbjct: 270 --VTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLF 327

Query: 238 RTMHKD 243
            +M +D
Sbjct: 328 ESMQRD 333


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           YF      +EE+   G   ++    +L+  + K G++   + V + + K GL+P     N
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N Y RLG  ++   + +AM       D+ TY++LIN   +   ++    LF  +  K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVK 241

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+ VT+T+ +  + +       +EI+++M+     PD  T   LI     +  ++Q 
Sbjct: 242 ALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 234 TTLVRTM 240
             L+  M
Sbjct: 302 NDLIDEM 308



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/199 (19%), Positives = 86/199 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA+ +F+EM    + P   +   L+  + K G V     +  QM    L PD    N++
Sbjct: 229 DDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +    + G  ++  +++  M       D  TY  LI+   + G ++      + +  + +
Sbjct: 289 IYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           + D V +T+ ++   ++       ++  EM+  G  PD  T  ++I+    +  + + + 
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 236 LVRTMHKDMKTALPIYFNL 254
           L++ M +D      + +N+
Sbjct: 409 LLKEMQRDGHVPSVVTYNV 427



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 42/248 (16%)

Query: 28  YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           YP+     N L+ +   +  + +       A +VF+ + + G+ P++ S+  L+  Y + 
Sbjct: 138 YPASLYFFNILMHRFCKDGDIRV-------AQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLN-------------LYGRL------------ 122
           G++ +   + + M  SG++PD +  + ++N             L+  +            
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTF 250

Query: 123 ----------GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
                     G+ +   E+   M   S   D+ TYN LI    + G +++   L   +  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSM 310

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           K L+PD +T+T+ +    ++       E  + MI      D      LIS    E +   
Sbjct: 311 KGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370

Query: 233 VTTLVRTM 240
              ++R M
Sbjct: 371 AEKMLREM 378



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 75/166 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++++M    + P + ++  L+    K G++ +   +I++M   GL+PD     ++++
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLID 325

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  +   E    M + +   D   Y  LI+   + G     E + + + +  LKP
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP 385

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           D  T+T  +  + +K    +  ++ +EM   G  P   T  VL++ 
Sbjct: 386 DARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|308813023|ref|XP_003083818.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
 gi|116055700|emb|CAL57785.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
          Length = 725

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 2/172 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S A  VFE M+  GI P + S+  L+ A    G  A+   ++ ++ +SGL+P+     +
Sbjct: 412 LSRAKDVFERMRADGIPPDLVSYNTLIDACINAGAPAEAWNILREISESGLRPNIVTYTT 471

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +L     +G       ++  +EK  +   D+  YN LIN Y R G + +     +++ AK
Sbjct: 472 LLKYVVEVGDHSATSWIVAELEKDLTVVEDVGVYNCLINAYARQGDMARAMETMETMRAK 531

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISAC 224
           ++ PD+ T+ +    Y R    R  L ++E      G  PD    K L+  C
Sbjct: 532 KIAPDISTYGALTNGYVRVGNVREALSLYESCSKTDGLTPDARMRKSLVYGC 583



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 9/139 (6%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V   M R G+ P + ++  L+  + +   +   E  + +M ++ +KP+    NS+L
Sbjct: 335 EADEVLRRMSRDGVKPNVYTYSTLIDGFVRASQIGLAETALEEMRRAKIKPNVVTYNSLL 394

Query: 117 N--LYGRLGQFEKMEEVLT-------AMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
              L G  G   + +E+L+        M       D+ +YN LI+     G   +   + 
Sbjct: 395 KGVLSGAGGPAARTDEMLSRAKDVFERMRADGIPPDLVSYNTLIDACINAGAPAEAWNIL 454

Query: 168 QSLPAKRLKPDVVTWTSRL 186
           + +    L+P++VT+T+ L
Sbjct: 455 REISESGLRPNIVTYTTLL 473



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P      S++    R G+  + +EVL  M +     ++ TY+ LI+ + R   I   E 
Sbjct: 314 RPGVQAYTSLVQGLSRSGRLIEADEVLRRMSRDGVKPNVYTYSTLIDGFVRASQIGLAET 373

Query: 166 LFQSLPAKRLKPDVVTWTSRL---------AAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
             + +   ++KP+VVT+ S L          A    ++  R  ++FE M   G  PD  +
Sbjct: 374 ALEEMRRAKIKPNVVTYNSLLKGVLSGAGGPAARTDEMLSRAKDVFERMRADGIPPDLVS 433

Query: 217 AKVLISAC 224
              LI AC
Sbjct: 434 YNTLIDAC 441


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP+ F +   I       + + AH +F  M   G  P + ++ +++   +K  N      
Sbjct: 481 TPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALK 540

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M +SG +PD      ++ + G  G  E+ E +   M+K ++  D   Y +L++++G
Sbjct: 541 LYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWG 600

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G ++K    + ++    LKP+V T  S L+A+ R        ++ + M+  G  P   
Sbjct: 601 KSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQ 660

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 661 TYTLLLSCCT 670



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 105/257 (40%), Gaps = 47/257 (18%)

Query: 31  HFMLINFLLLQH-----TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHM 78
            F  IN LL Q       PN+  +   I       Y  DA  VF++M+  G  P   ++ 
Sbjct: 394 QFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYC 453

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-------------- 124
            L+  ++K+G +    G+  +M  +GL PDTF  + M+N  G+ G               
Sbjct: 454 TLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDE 513

Query: 125 ---------------------FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
                                +E   ++   M++  +  D  TY I++ + G  GF+E+ 
Sbjct: 514 GCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEA 573

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           EG+F  +  K   PD   +   +  + +    ++  E +  M+ AG  P+  T   L+SA
Sbjct: 574 EGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSA 633

Query: 224 CSSEDQIEQVTTLVRTM 240
                Q+     L+++M
Sbjct: 634 FLRVHQLSDAYQLLQSM 650



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 99/211 (46%), Gaps = 8/211 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F+  + + ++M + G  P + ++  ++ +Y +   +     V  QM ++G +PD     +
Sbjct: 395 FAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCT 454

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +    +   M+      D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 455 LIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEG 514

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQIE 231
             P++VT+   +A  ++ + Y   L+++ +M  +G  PD  T  +++     C   ++ E
Sbjct: 515 CVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAE 574

Query: 232 QVTTLVRTMHKDMKTALPIY---FNLYGEKG 259
            +   +    K+     P+Y    +L+G+ G
Sbjct: 575 GI--FIEMQKKNWVPDEPVYGLLVDLWGKSG 603



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%)

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            + D     +M+ L GR  QF  + ++L  M K     ++ TYN +I+ YGR  +++   
Sbjct: 375 FRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAV 434

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            +F+ +     +PD VT+ + +  +++       + ++E+M DAG  PD  T  V+I+
Sbjct: 435 NVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMIN 492


>gi|14488297|gb|AAK63878.1|AC074105_7 Putative salt-inducible protein [Oryza sativa]
 gi|222612440|gb|EEE50572.1| hypothetical protein OsJ_30721 [Oryza sativa Japonica Group]
          Length = 854

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 3/215 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A+  F EM R G+ P   ++  L++A+ + GNV++   +  +M +SGL PD F  N
Sbjct: 556 FLDEAYNGFIEMIRRGLVPNNFTYNSLISAFCRAGNVSEALKLEQKMRQSGLVPDIFTRN 615

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +++ + R G       +   M       D+ TYN ++N Y R   I         + A 
Sbjct: 616 ILIDGFCREGGLNTANNLFFGMYSIGLTPDVVTYNTMLNAYCRSKDINGAMIFMNKMLAD 675

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE--DQIE 231
             +PD+ T+   + +     L  R + + +E+    C P+  T   L+    S+  D+  
Sbjct: 676 GCEPDIFTYNIWMHSLCSNHLLNRAMMLLDELAATDCAPNSVTYNTLMDGICSDVLDRAM 735

Query: 232 QVT-TLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            +T  L++   +     + I F+ + + G  +  L
Sbjct: 736 ILTGRLIKLAFQPNTVTINILFSHFCKNGFGKRAL 770



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   +++MK +G+ P   +    +    +   + +      +M + GL P+ F  NS+++
Sbjct: 525 ALKCWDDMKIVGLQPDFVAFSAYVNGLCRLDFLDEAYNGFIEMIRRGLVPNNFTYNSLIS 584

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + R G   +  ++   M +     DI T NILI+ + R G +     LF  + +  L P
Sbjct: 585 AFCRAGNVSEALKLEQKMRQSGLVPDIFTRNILIDGFCREGGLNTANNLFFGMYSIGLTP 644

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+ + L AY R K     +    +M+  GC PD  T  + + +  S   + +   L+
Sbjct: 645 DVVTYNTMLNAYCRSKDINGAMIFMNKMLADGCEPDIFTYNIWMHSLCSNHLLNRAMMLL 704



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 85/222 (38%), Gaps = 36/222 (16%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F+EM+  G  PT+ ++ +L+    + G + +   + ++M ++G++ +T   N ++
Sbjct: 279 DAFNLFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAGVEVNTITFNVLI 338

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL---INIYGRGGFIEKMEGLFQSLPAK 173
           + Y + GQ E        M+      D  T+NIL      +G+       +     +   
Sbjct: 339 DGYAKAGQMENANMACAEMKAMGLMPDCCTFNILSAGAYKFGKAALFVLDQQQLHEMFGS 398

Query: 174 RLKPDVV-------TWTSRL--------------------------AAYSRKKLYRRCLE 200
           +L  D +        W  RL                          AAYS++       E
Sbjct: 399 QLSTDGIDMLICRLCWDGRLDDAWELLCSAIEKGVQVSVSGFNALIAAYSKEGFDEEAFE 458

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +++ M   G  P   T   LI    +  +++Q    +  M +
Sbjct: 459 LYKTMNKLGLAPSSSTLNYLIMGLCNRGRLDQARLFLEYMVR 500



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 77/195 (39%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L  F+ +    +A  V   ++R G TP++ +   LL    + G V     V  +M   G 
Sbjct: 163 LHAFLAAGMADEALDVLARVRRAGDTPSLSALAALLRLLFRGGEVRAAWKVFEEMAARGP 222

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+  + N+M+      G       +L  M +     D  +YNIL+  +   G  E    
Sbjct: 223 RPNLAIFNAMIFGLCHRGLVRVSGGLLGVMGRFHVVPDACSYNILMKGHCLYGQAEDAFN 282

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           LF  +      P +VT+   +    R+        +F+EM+ AG   +  T  VLI   +
Sbjct: 283 LFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAGVEVNTITFNVLIDGYA 342

Query: 226 SEDQIEQVTTLVRTM 240
              Q+E        M
Sbjct: 343 KAGQMENANMACAEM 357



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 1/174 (0%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+  ++     L+ AYSK G   +   +   M+K GL P +  +N ++      G+ ++ 
Sbjct: 432 GVQVSVSGFNALIAAYSKEGFDEEAFELYKTMNKLGLAPSSSTLNYLIMGLCNRGRLDQA 491

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
              L  M +  Y   I+++ I ++   R G +      +  +    L+PD V +++ +  
Sbjct: 492 RLFLEYMVRMGYCV-IASFTIYLDSSFRAGDVLGALKCWDDMKIVGLQPDFVAFSAYVNG 550

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             R          F EMI  G  P+  T   LISA      + +   L + M +
Sbjct: 551 LCRLDFLDEAYNGFIEMIRRGLVPNNFTYNSLISAFCRAGNVSEALKLEQKMRQ 604



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 2/172 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A    E M R+G    + S  + L +  + G+V       + M   GL+PD    ++ +N
Sbjct: 491 ARLFLEYMVRMGYC-VIASFTIYLDSSFRAGDVLGALKCWDDMKIVGLQPDFVAFSAYVN 549

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              RL   ++       M +     +  TYN LI+ + R G + +   L Q +    L P
Sbjct: 550 GLCRLDFLDEAYNGFIEMIRRGLVPNNFTYNSLISAFCRAGNVSEALKLEQKMRQSGLVP 609

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
           D+ T    +  + R+        +F  M   G  PD  T   +++A C S+D
Sbjct: 610 DIFTRNILIDGFCREGGLNTANNLFFGMYSIGLTPDVVTYNTMLNAYCRSKD 661



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 63/163 (38%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VFEEM   G  P +     ++      G V    G++  M +  + PD    N ++ 
Sbjct: 210 AWKVFEEMAARGPRPNLAIFNAMIFGLCHRGLVRVSGGLLGVMGRFHVVPDACSYNILMK 269

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            +   GQ E    +   M        I TYNIL+N   R G + +   LF  +    ++ 
Sbjct: 270 GHCLYGQAEDAFNLFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAGVEV 329

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
           + +T+   +  Y++            EM   G  PD  T  +L
Sbjct: 330 NTITFNVLIDGYAKAGQMENANMACAEMKAMGLMPDCCTFNIL 372



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 7/189 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFVIN 113
           +A  +++ M +LG+ P+  +   L+      G + +    +  M + G   +   T  ++
Sbjct: 455 EAFELYKTMNKLGLAPSSSTLNYLIMGLCNRGRLDQARLFLEYMVRMGYCVIASFTIYLD 514

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S       LG  +  ++    M+      D   ++  +N   R  F+++    F  +  +
Sbjct: 515 SSFRAGDVLGALKCWDD----MKIVGLQPDFVAFSAYVNGLCRLDFLDEAYNGFIEMIRR 570

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L P+  T+ S ++A+ R       L++ ++M  +G  PD  T  +LI     E  +   
Sbjct: 571 GLVPNNFTYNSLISAFCRAGNVSEALKLEQKMRQSGLVPDIFTRNILIDGFCREGGLNTA 630

Query: 234 TTLVRTMHK 242
             L   M+ 
Sbjct: 631 NNLFFGMYS 639


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 3/192 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVIN 113
           F ++  +FE MK +G++P + +   +L    K G     + V ++M K+ G+KPDT+  N
Sbjct: 171 FKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYN 230

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP-- 171
            ++  + +    ++       M       D+ TYN L++   R G I+    L   +   
Sbjct: 231 ILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKK 290

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            K L PDVVT+T+ +  Y RK+     L+I EEM   G  P+  T   LI       + +
Sbjct: 291 CKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWD 350

Query: 232 QVTTLVRTMHKD 243
           ++  ++  M  D
Sbjct: 351 KMKEILEQMKGD 362



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-PDTFVINS 114
            +A  + EEM   G+ P + ++  L+    +     K + ++ QM   G   PD    N+
Sbjct: 315 DEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNT 374

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N +   G  ++  +V   M+K   +AD ++Y++LI    + G   K E LF  L  K 
Sbjct: 375 LINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKE 434

Query: 175 L 175
           +
Sbjct: 435 I 435



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 98  NQMHKSGL--KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK---GSYAADISTYNILIN 152
           N +H+ G    P T+ I  ML + GR          L ++EK   G    +   +N LI 
Sbjct: 106 NWIHEKGFSHNPQTYFI--MLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFFNSLIR 163

Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCY 211
            YG  G  ++   LF+++    + P VVT+ S L    ++       E+++EM+   G  
Sbjct: 164 SYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVK 223

Query: 212 PDGGTAKVLISACSSEDQIEQ 232
           PD  T  +LI        +++
Sbjct: 224 PDTYTYNILIRGFCKNSMVDE 244



 Score = 44.7 bits (104), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 4/198 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFVI 112
           + A   F  +   G +   +++ ++L    +  N+      +  + K     +K +    
Sbjct: 99  TKAFLFFNWIHEKGFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFF 158

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN-ILINIYGRGGFIEKMEGLFQSLP 171
           NS++  YG  G F++  ++   M+    +  + T+N +L+ +  RG      E   + L 
Sbjct: 159 NSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLK 218

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              +KPD  T+   +  + +  +       F+EM    C PD  T   L+       +I+
Sbjct: 219 TYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIK 278

Query: 232 QVTTLVRTMHKDMKTALP 249
               LV  M K  K   P
Sbjct: 279 VAHNLVNGMSKKCKDLSP 296



 Score = 44.3 bits (103), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 15/203 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-------GLKP 107
             +A  VFE MK+L ++    S+ +L+    + G+  K E + +++ +        G KP
Sbjct: 385 LDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKP 444

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTA-MEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
                  M       G+ +K E VL   M++G+   D  +Y I+I  + + G  E   GL
Sbjct: 445 LAASYKCMFQYLCENGKTKKAERVLRQLMKRGT--QDPLSYQIVILGHCKEGSYENGYGL 502

Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-----AKVLI 221
              +  +   PD+  +   +  + RK       E  E+M+ +   P   T      ++L 
Sbjct: 503 LVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSILNRLLE 562

Query: 222 SACSSEDQIEQVTTLVRTMHKDM 244
             C  E     V  L R + +++
Sbjct: 563 QGCVHESAGVIVMMLERNIRQNI 585


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TP+ F +   I       + + AH +F  M   G  P + ++ +++   +K  N      
Sbjct: 481 TPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALK 540

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           +   M +SG +PD      ++ + G  G  E+ E +   M+K ++  D   Y +L++++G
Sbjct: 541 LYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWG 600

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G ++K    + ++    LKP+V T  S L+A+ R        ++ + M+  G  P   
Sbjct: 601 KSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQ 660

Query: 216 TAKVLISACS 225
           T  +L+S C+
Sbjct: 661 TYTLLLSCCT 670



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 105/257 (40%), Gaps = 47/257 (18%)

Query: 31  HFMLINFLLLQH-----TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHM 78
            F  IN LL Q       PN+  +   I       Y  DA  VF++M+  G  P   ++ 
Sbjct: 394 QFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYC 453

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-------------- 124
            L+  ++K+G +    G+  +M  +GL PDTF  + M+N  G+ G               
Sbjct: 454 TLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDE 513

Query: 125 ---------------------FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
                                +E   ++   M++  +  D  TY I++ + G  GF+E+ 
Sbjct: 514 GCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEA 573

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           EG+F  +  K   PD   +   +  + +    ++  E +  M+ AG  P+  T   L+SA
Sbjct: 574 EGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSA 633

Query: 224 CSSEDQIEQVTTLVRTM 240
                Q+     L+++M
Sbjct: 634 FLRVHQLSDAYQLLQSM 650



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 99/211 (46%), Gaps = 8/211 (3%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F+  + + ++M + G  P + ++  ++ +Y +   +     V  QM ++G +PD     +
Sbjct: 395 FAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCT 454

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  +    +   M+      D  TY+++IN  G+ G +     LF  +  + 
Sbjct: 455 LIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEG 514

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQIE 231
             P++VT+   +A  ++ + Y   L+++ +M  +G  PD  T  +++     C   ++ E
Sbjct: 515 CVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAE 574

Query: 232 QVTTLVRTMHKDMKTALPIY---FNLYGEKG 259
            +   +    K+     P+Y    +L+G+ G
Sbjct: 575 GI--FIEMQKKNWVPDEPVYGLLVDLWGKSG 603



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%)

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
            + D     +M+ L GR  QF  + ++L  M K     ++ TYN +I+ YGR  +++   
Sbjct: 375 FRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAV 434

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
            +F+ +     +PD VT+ + +  +++       + ++E+M DAG  PD  T  V+I+
Sbjct: 435 NVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMIN 492


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 19/211 (9%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITP-----TMKSHMLLLTAYSKTGNVAKCE------ 94
           L++++ S    +AH +F  M    +          + M+ LT      N++ C       
Sbjct: 311 LYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELT----KDNLSACHRGSEAL 366

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
            + ++++ SG+KPD F ++S+L++  R+   E+ E++     K  + +D+     LI++Y
Sbjct: 367 KLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMY 426

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G IE+    F  +  + +    + WTS +  +S+  + ++ L IFE+M  AG  P+ 
Sbjct: 427 SKCGSIERASKAFLEMSTRTM----IAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNA 482

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
            T   ++SACS    + Q       M K  K
Sbjct: 483 VTFVGVLSACSHAGMVSQALNYFEIMQKKYK 513



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
           + L+N+Y + G +E    +F ++    L+ +VV WT+ +  + +    +  + +F+EM+ 
Sbjct: 106 SFLVNVYAKCGNMEDARRVFDNM----LRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLY 161

Query: 208 AGCYPDGGTAKVLISACSS 226
           AG YP   T   ++ ACSS
Sbjct: 162 AGSYPSVYTLSAVLHACSS 180



 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 15/187 (8%)

Query: 45  NLFV--FIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           N FV  F+ ++Y       DA  VF+ M R  +     +   L+  + +         V 
Sbjct: 101 NFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVV----AWTTLMVGFVQNSQPKHAIHVF 156

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
            +M  +G  P  + ++++L+    L   +  ++    + K     D S  + L ++Y + 
Sbjct: 157 QEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKC 216

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G +E     F  +  K    +V++WTS ++A +      + L +F EMI     P+  T 
Sbjct: 217 GRLEDALKTFSRIREK----NVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTL 272

Query: 218 KVLISAC 224
              +S C
Sbjct: 273 TSALSQC 279


>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 484

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 95/206 (46%), Gaps = 5/206 (2%)

Query: 40  LQHTPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           L+   +++V +   Y       ++  +F++M+ LG+  T+KS+  L    S+ G     +
Sbjct: 76  LEWDEDMWVMMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSK 135

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
              N+M   G++P     N ++  +   G+ E        M+      D+ TYN +IN Y
Sbjct: 136 RYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREITPDVITYNTMINGY 195

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            R   +E+ E  F  +  +++ P VVT+T+ +  Y+        L + EEM   G  P+ 
Sbjct: 196 NRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEEMKGLGIKPNA 255

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
            T   L+    + +++ +  ++++ M
Sbjct: 256 ITYSTLLPGLCNAEKMSEARSILKEM 281



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 4/196 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M   GI PT  +  +L+  +  +G V         M    + PD    N+M+N Y R
Sbjct: 138 FNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREITPDVITYNTMINGYNR 197

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           + + E+ E+    M++      + TY  LI  Y     ++    L + +    +KP+ +T
Sbjct: 198 VKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEEMKGLGIKPNAIT 257

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP-DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +++ L      +       I +EM+D    P D      LIS+      ++    +++ M
Sbjct: 258 YSTLLPGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKAGNLDAAADVLKAM 317

Query: 241 HKDMKTALPIYFNLYG 256
              ++ ++P     YG
Sbjct: 318 ---IRLSVPTEAGHYG 330



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 89/207 (42%), Gaps = 5/207 (2%)

Query: 39  LLQHTPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
           LL+H   + + I  I       + A  +  +M + G+       ++++ +Y K G V + 
Sbjct: 40  LLEHNREIHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMIDSYGKAGIVQES 99

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             +  +M + G++      +++  +  R G++   +     M          T+N+LI  
Sbjct: 100 VKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWG 159

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           +   G +E     F+ + ++ + PDV+T+ + +  Y+R K      + F EM +    P 
Sbjct: 160 FFLSGKVETANRFFEDMKSREITPDVITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPT 219

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTM 240
             T   LI   +S D+++    LV  M
Sbjct: 220 VVTYTTLIKGYASVDRVDDALRLVEEM 246



 Score = 37.4 bits (85), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 39/174 (22%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F EMK   I PT+ ++  L+  Y+    V     ++ +M   G+KP+    ++
Sbjct: 201 MEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEEMKGLGIKPNAITYST 260

Query: 115 ML-----------------------------NLYGRL-------GQFEKMEEVLTAMEKG 138
           +L                             +++ RL       G  +   +VL AM + 
Sbjct: 261 LLPGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRL 320

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--LKPDVVTWTSRLAAYS 190
           S   +   Y +LI  Y + G  +K   L   L  K   L+P   T    L+AY+
Sbjct: 321 SVPTEAGHYGVLIEYYCKAGQYDKAVKLLDKLIEKDIILRPQ-STLHMELSAYN 373


>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 101/217 (46%), Gaps = 3/217 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F     + +EM  +   PT+ ++  ++ AY +   + +   V  +M  +G +PD     +
Sbjct: 379 FGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCT 438

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++ + G  E   ++   M++   + D  TY+ ++N  G+GG +     LF  +    
Sbjct: 439 LIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNG 498

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++VT+   +A  ++ + Y   ++++ +M  AG  PD  T  +++        +++  
Sbjct: 499 CTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAE 558

Query: 235 TLVRTMHKDMKTALPIY---FNLYGEKGVARSNLGQY 268
            +   M +D     P+Y    +L+G+ G     LG Y
Sbjct: 559 AVFLEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWY 595



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y  +A  VFEEM+  G  P   ++  L+  ++K+G +     +  +M + GL PDTF  +
Sbjct: 413 YLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYS 472

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +M+N  G+ GQ     ++   M       ++ TYNI+I +  +    + +  L++ +   
Sbjct: 473 AMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIA 532

Query: 174 RLKPDVVTWT 183
             +PD +T++
Sbjct: 533 GFRPDKITYS 542



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 69/153 (45%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
           + G K D     +M+ + G+  QF  M ++L  M   +    + TYN +I+ YGR  ++ 
Sbjct: 356 QPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLR 415

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +   +F+ +     +PD VT+ + +  +++       ++++  M + G  PD  T   ++
Sbjct: 416 EAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMV 475

Query: 222 SACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           +      Q+     L   M  +  T   + +N+
Sbjct: 476 NCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNI 508



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A AVF EM+R    P    + LL+  + K GNV K  G  + M + GL+P+    N
Sbjct: 553 HLDEAEAVFLEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCN 611

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           S+L+ + +L +F+    VL  M        + TY +L++
Sbjct: 612 SLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTLLLS 650



 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPNL  +   I        + +   ++ +M+  G  P   ++ +++      G++ + E 
Sbjct: 500 TPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEA 559

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V  +M +    PD  V   +++L+G+ G  +K      AM +     ++ T N L++ + 
Sbjct: 560 VFLEMRRD-WAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFL 618

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           +    +   G+ Q++ A+ L P + T+T
Sbjct: 619 KLNRFQDAYGVLQNMLAQGLVPSLQTYT 646


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 26/230 (11%)

Query: 10  DLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFV----FIFSIYFSD---AHAVF 62
           + CV   +PH   F+  PY      I+       PNL +    F      SD   A  ++
Sbjct: 28  EFCVV--SPH---FDGFPYA-----ISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLY 77

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
             M  LG+ P   +   LL + +K+    + + +   + K G   D +V  S++++Y + 
Sbjct: 78  LVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQN 137

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G+ E   +V       S   D+ +Y  LI  Y   G+IE  + LF  +P K    DVV+W
Sbjct: 138 GRLEDARKVFDI----SSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK----DVVSW 189

Query: 183 TSRLAAYSRKKLYRRCLEIFEE-MIDAGCYPDGGTAKVLISACSSEDQIE 231
            + ++ Y     Y+  LE+F+E M+     PD  T   ++SAC+  D IE
Sbjct: 190 NAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIE 239



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 9/179 (5%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVI 112
           Y   A  +F+E+    +     S   +++ Y +TGN  +   +  +M   + ++PD   +
Sbjct: 170 YIESAQKLFDEIPGKDVV----SWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTM 225

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
            ++++   +    E    V + +    +A+++   N LI++Y + G +E    LF  L  
Sbjct: 226 VTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWN 285

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           K    DV++W + +  Y+   LY+  L +F+EM+ +G  P+  T   ++ AC+    I+
Sbjct: 286 K----DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 340



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 92/240 (38%), Gaps = 18/240 (7%)

Query: 6   CTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEM 65
           C   D     R  HSW  N   + S+  ++N L+  ++           F +     E  
Sbjct: 232 CAQSDSIELGRHVHSW-INDHGFASNLKIVNALIDLYSK----------FGEVETACELF 280

Query: 66  KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125
             L     + S   L+  Y+      +   +  +M +SG  P+   + S+L     LG  
Sbjct: 281 DGLW-NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 339

Query: 126 EKMEEV---LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           +    +   +    KG      S    LI++Y + G I+  + +F S  + R    + TW
Sbjct: 340 DIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNR---SLSTW 396

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            + ++ ++         +IF  M   G  PD  T   L+SACS    ++    + R+M +
Sbjct: 397 NAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTR 456


>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 481

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 5/206 (2%)

Query: 40  LQHTPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
           L+   +++V +   Y       ++  +F++M+ LG+  T+KS+  L    S+ G     +
Sbjct: 76  LEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSK 135

Query: 95  GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
              N+M   G++P     N ++  +   G+ E        ++      D+ TYN +IN Y
Sbjct: 136 RYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDLKSREITPDVVTYNTMINGY 195

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            R   +E+ E  F  +  K++ P VVT+T+ +  Y+        L + EEM   G  P+ 
Sbjct: 196 TRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLVEEMKGLGIKPNA 255

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
            T   L+      +++ +  +L++ M
Sbjct: 256 ITYSTLLPGLCDAEKMSEARSLLKEM 281



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 80/183 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +  +M + G+       +L++ +Y K G V +   +  +M + G++      +++  
Sbjct: 64  ARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFK 123

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +  R G++   +     M          T+N+LI  +   G +E     F+ L ++ + P
Sbjct: 124 VISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDLKSREITP 183

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DVVT+ + +  Y+R K      + F EM +    P   T   LI   +S D+++    LV
Sbjct: 184 DVVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLV 243

Query: 238 RTM 240
             M
Sbjct: 244 EEM 246



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 82/196 (41%), Gaps = 4/196 (2%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M   GI PT  +  +L+  +  +G V         +    + PD    N+M+N Y R
Sbjct: 138 FNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDLKSREITPDVVTYNTMINGYTR 197

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
           + + E+ E+    M++      + TY  LI  Y     ++    L + +    +KP+ +T
Sbjct: 198 VKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLVEEMKGLGIKPNAIT 257

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP-DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +++ L      +       + +EM+D    P D      LIS+      ++    +++ M
Sbjct: 258 YSTLLPGLCDAEKMSEARSLLKEMVDKYIAPKDNSIFIRLISSQCKAGNLDAAADVLKAM 317

Query: 241 HKDMKTALPIYFNLYG 256
              ++ ++P     YG
Sbjct: 318 ---IRLSIPTEAGHYG 330



 Score = 40.8 bits (94), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 48/107 (44%)

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ + GR  +      +L  M K     D   + ++I+ YG+ G +++   LFQ +    
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELG 110

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           ++  + ++ +     SR+  Y      F +M++ G  P   T  VLI
Sbjct: 111 VERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLI 157



 Score = 37.4 bits (85), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 86/200 (43%), Gaps = 15/200 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F EMK   I PT+ ++  L+  Y+    V     ++ +M   G+KP+    ++
Sbjct: 201 MEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLVEEMKGLGIKPNAITYST 260

Query: 115 MLNLYGRLGQFEKMEEVLTAMEK--GSYAA--DISTYNILINIYGRGGFIEKMEGLFQSL 170
           +L     L   EKM E  + +++    Y A  D S +  LI+   + G ++    + +++
Sbjct: 261 LL---PGLCDAEKMSEARSLLKEMVDKYIAPKDNSIFIRLISSQCKAGNLDAAADVLKAM 317

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--------AGCYPDGGTAKVLIS 222
               +  +   +   +  Y +   Y + +++F+++I+        +  + +      LI 
Sbjct: 318 IRLSIPTEAGHYGVLIENYCKAGKYDQAVKLFDKLIEKDIILRPQSTLHMEPSAYNPLIE 377

Query: 223 ACSSEDQIEQVTTLVRTMHK 242
              +  Q  +  TLVR + K
Sbjct: 378 YLCNNGQTGKAETLVRQLMK 397


>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hermannioides]
          Length = 382

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EMK  G+ P   S+  LLT Y +     +   V +
Sbjct: 40  LVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFS 99

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 100 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 159

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM   G  P+  T  
Sbjct: 160 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 219

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 220 TIISIWGKXGKLDRAAMLFQKLR 242



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 82/151 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 21  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 80

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V + M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 81  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 171



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 128 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 187

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 188 MIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVE 247

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D + + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 248 IDQILFQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDTAIHILAGAGRIEEATYV 303

Query: 237 VR 238
            R
Sbjct: 304 FR 305



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 86/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y + G   + + +   M K G++P+    N+
Sbjct: 91  FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 150

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   L Q + ++ 
Sbjct: 151 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG 210

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 211 IEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 259



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 87/186 (46%), Gaps = 6/186 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG++ D  +  +M+ 
Sbjct: 199 ANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 258

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +  I+I    G IE+   +F Q++ A  +K
Sbjct: 259 AYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 314

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             +  +   +   S+ K Y   +E+F++M   G +PD     ++++A     + ++   +
Sbjct: 315 X-ITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDV 373

Query: 237 VRTMHK 242
              M +
Sbjct: 374 YMEMQE 379



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/116 (19%), Positives = 54/116 (46%)

Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
           D  + ++++ L  +L  + K   + + +++  +  D+  YN +IN++G+     +   L 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             +    + P+  ++++ L  Y   K +   L +F EM +  C  D  T  ++I  
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDV 119



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F  M+R  I   + ++  ++  Y KT    K   +I +M   G++P++   ++
Sbjct: 161 FGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 220

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++++G+ G+ ++   +   +       D   +  +I  Y R G +   + L   L    
Sbjct: 221 IISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELK--- 277

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            +PD +   + +   +          +F + IDAG
Sbjct: 278 -RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAG 311


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 34  LINFLLLQ-HTPNLFVF---IFSI----YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           L+N++  Q  +P++F +   I S+    Y SDA  +F+EM   G+TP +  + +L+  + 
Sbjct: 171 LLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFF 230

Query: 86  KTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
           K G++     +  ++ K   + P+    N M+N   + G+F++  E+   M+K     D+
Sbjct: 231 KKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDL 290

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
            TY+ LI+     G ++    +++ +    + PDVV + + L  Y R      CLE+++ 
Sbjct: 291 YTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKV 350

Query: 205 MIDAGC 210
           M   GC
Sbjct: 351 MEKEGC 356



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 2/190 (1%)

Query: 58  AHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +F+ M  + G  P ++S+  LL A  ++    + E         GL P+    N ++
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 156

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +  R  QF+K +E+L  M +  ++ D+ +Y  LIN   + G++     LF  +P + + 
Sbjct: 157 KISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVT 216

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTT 235
           PDV  +   +  + +K       EI+E ++     YP+  +  V+I+      + ++   
Sbjct: 217 PDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFE 276

Query: 236 LVRTMHKDMK 245
           +   M K+ +
Sbjct: 277 IWHRMKKNER 286



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 81/189 (42%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y + A ++ EE +         ++  ++    + G + +  GV++QM K G KP+  V N
Sbjct: 409 YLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCN 468

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N + R  + E        M        + TYN LIN   +     +   L + +  K
Sbjct: 469 AVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHK 528

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KP+++T++  +    + K     L ++ + ++ G  PD     ++I    S  ++E  
Sbjct: 529 GWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDA 588

Query: 234 TTLVRTMHK 242
             L   M +
Sbjct: 589 LQLYSEMKQ 597



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 35/229 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----------- 106
           A  V++EM   G++P +  +  +L  Y + G + +C  +   M K G +           
Sbjct: 309 ATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRG 368

Query: 107 -----------------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                                   D+     +++   + G   K   +L   E G    D
Sbjct: 369 LFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLD 428

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
              Y+ +IN   R G ++++ G+   +     KP+     + +  + R       L  F 
Sbjct: 429 TFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG 488

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIY 251
            M+  GC+P   T   LI+  S  ++  +   LV+ M HK  K  +  Y
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITY 537



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 92/209 (44%), Gaps = 8/209 (3%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRL-------GITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PNL  +   I  S     F++ K L       G +P + S+  L+ + +K G ++    
Sbjct: 146 SPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALK 205

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIY 154
           + ++M + G+ PD    N +++ + + G      E+   + KG S   +I +YN++IN  
Sbjct: 206 LFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGL 265

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G  ++   ++  +       D+ T+++ +              +++EM + G  PD 
Sbjct: 266 CKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDV 325

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKD 243
                +++      +IE+   L + M K+
Sbjct: 326 VVYNTMLNGYLRAGRIEECLELWKVMEKE 354



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/209 (18%), Positives = 88/209 (42%), Gaps = 1/209 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L   I S  + +A + F   + +G++P ++++ +L+    +     K + ++N M + G 
Sbjct: 121 LNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGF 180

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKME 164
            PD F   +++N   + G      ++   M +     D++ YNILI+  + +G  +   E
Sbjct: 181 SPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASE 240

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
              + L    + P++ ++   +    +   +    EI+  M       D  T   LI   
Sbjct: 241 IWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGL 300

Query: 225 SSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
                ++  T + + M ++  +   + +N
Sbjct: 301 CGSGNLDGATRVYKEMAENGVSPDVVVYN 329



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+ +    DA   F  M   G  PT+ ++  L+   SK    ++   ++ +M   G KP+
Sbjct: 474 FVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPN 533

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLT----AMEKGSYAADISTYNILINIYGRGGFIEKME 164
               + ++N    L Q +K++  L     A+EKG +  D+  +NI+I+     G +E   
Sbjct: 534 MITYSLLMN---GLCQGKKLDMALNLWCQALEKG-FKPDVKMHNIIIHGLCSSGKVEDAL 589

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
            L+  +  ++  P++VT  + +  + + + + R  +I++ ++ +
Sbjct: 590 QLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQS 633



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 79/181 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A +++E +          ++ +L+    K G + K   ++ +        DTF  +SM
Sbjct: 376 DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 435

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   R G+ +++  VL  M K     +    N +IN + R   +E     F ++ +K  
Sbjct: 436 INGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGC 495

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P VVT+ + +   S+ + +     + +EM+  G  P+  T  +L++      +++    
Sbjct: 496 FPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALN 555

Query: 236 L 236
           L
Sbjct: 556 L 556


>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Glycine max]
          Length = 515

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 66/111 (59%)

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
           L A+   G +   E    +   +G++P+    N +L+ YG+   ++KM  V+  M+K  Y
Sbjct: 306 LRAFGNIGQIETMEKCYEKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSAVMEYMQKYHY 365

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           +  I T+NI+I+ +G+ G +++ME LF+ + ++R+KP  VT  S + AY+R
Sbjct: 366 SWTIVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYAR 416



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 2/204 (0%)

Query: 42  HTPNLFVFIFSIYFSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           +T  L  +  S     A ++ EEMK   G  P ++++ +LL +  +     K + +++ M
Sbjct: 195 YTALLSAYSRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAFDKIQSLLSDM 254

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGF 159
              G+KP+T   N++++ YG+  +F +ME +L  M    Y   D+ T N  +  +G  G 
Sbjct: 255 TNRGIKPNTVTYNTLIDAYGKARKFSEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQ 314

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           IE ME  ++      ++P+V T+   L +Y + + Y++   + E M          T  +
Sbjct: 315 IETMEKCYEKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSAVMEYMQKYHYSWTIVTFNI 374

Query: 220 LISACSSEDQIEQVTTLVRTMHKD 243
           +I A      ++Q+  L R M  +
Sbjct: 375 VIDAFGKAGDLKQMEYLFRLMRSE 398



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 6/208 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSML 116
           AH +F+ M   G     +S+  LL+AYS++G + K   ++ +M  + G +PD    + +L
Sbjct: 176 AHELFQAMVDEGCVLDCESYTALLSAYSRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILL 235

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-L 175
               ++  F+K++ +L+ M       +  TYN LI+ YG+     +ME +   + A R  
Sbjct: 236 KSCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNTLIDAYGKARKFSEMESILVEMLADRYC 295

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDV T  S L A+          + +E+  +AG  P+  T  +L+ +       ++++ 
Sbjct: 296 QPDVWTMNSTLRAFGNIGQIETMEKCYEKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSA 355

Query: 236 LVRTMHKDMKTALPIYFNL----YGEKG 259
           ++  M K   +   + FN+    +G+ G
Sbjct: 356 VMEYMQKYHYSWTIVTFNIVIDAFGKAG 383



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 75/149 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +    AV E M++   + T+ +  +++ A+ K G++ + E +   M    +KP    + S
Sbjct: 350 YKKMSAVMEYMQKYHYSWTIVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCVTLCS 409

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  Y R G+ EK+  VL  +E      D   +N L++ Y R G + +M+G+ + +    
Sbjct: 410 LVRAYARAGKPEKISGVLRFVENSDVLLDTVFFNCLVDAYARLGCLAEMKGVLEMMKQNG 469

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
            KPD+VT+ + +  Y+ K +     E+ E
Sbjct: 470 CKPDIVTYRTMIKTYTYKGMDSHAKELRE 498



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           +F  M+   I P+  +   L+ AY++ G   K  GV+  +  S +  DT   N +++ Y 
Sbjct: 391 LFRLMRSERIKPSCVTLCSLVRAYARAGKPEKISGVLRFVENSDVLLDTVFFNCLVDAYA 450

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA------KR 174
           RLG   +M+ VL  M++     DI TY  +I  Y   G     + L + LP       KR
Sbjct: 451 RLGCLAEMKGVLEMMKQNGCKPDIVTYRTMIKTYTYKGMDSHAKELRELLPTVNRPPLKR 510

Query: 175 LKPD 178
            KPD
Sbjct: 511 DKPD 514



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
           E+  Y  D   Y  LI + G+    EK   LFQ++  +    D  ++T+ L+AYSR  L 
Sbjct: 149 EQIWYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLSAYSRSGLL 208

Query: 196 RRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFN 253
            +   + EEM +  GC PD  T  +L+ +C      +++ +L+  M ++ +K     Y  
Sbjct: 209 DKAFSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNT 268

Query: 254 LYGEKGVAR 262
           L    G AR
Sbjct: 269 LIDAYGKAR 277


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 91/185 (49%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +FEEMK  G+ P + S+  L+  +   G   + + + ++M   G++PD    + +
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+  + +++L  M +     ++ TYN LI+ +   G +     LF S+P+K L
Sbjct: 314 IDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGL 373

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PD +++T+ +  Y +    +  + ++ EM+  G  P+  T   L+     + ++     
Sbjct: 374 EPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKK 433

Query: 236 LVRTM 240
           L   M
Sbjct: 434 LFGVM 438



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 3/190 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  ++ EM ++G +P + ++  LL    + G V   + +   M   G+  ++ +    L
Sbjct: 395 EAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFL 454

Query: 117 N-LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           + L      FE ME +   ++  ++  +I  Y+ LI+   + G +E    LF+ L  + L
Sbjct: 455 DGLCKNDCLFEAME-LFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGL 513

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDVVT+   +  + +         +FE+M + GC PD      L+      +++E+V  
Sbjct: 514 QPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIK 573

Query: 236 LVRTM-HKDM 244
           L+  M  KD+
Sbjct: 574 LLHKMVQKDV 583



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 29/186 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +F  M++LG TP   ++  L+    +TGNV     +  ++HK            
Sbjct: 177 ISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNV----NIALKLHKE----------- 221

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           MLN   + G   K                + TY+I+I+   + G  ++ + LF+ + A+ 
Sbjct: 222 MLNDASQYGVNCK--------------PGVITYSIIIDGLCKVGREDEAKELFEEMKAQG 267

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDV+++++ +  +     + +   +F+EM+D G  PD  T  VLI     E ++ +  
Sbjct: 268 MIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAK 327

Query: 235 TLVRTM 240
            L+  M
Sbjct: 328 KLLEVM 333



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/146 (19%), Positives = 68/146 (46%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F E+K       ++++  L+    K G +     +  ++ + GL+PD    N M+
Sbjct: 465 EAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMI 524

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + ++GQ +    +   ME+     DI  YN L+  +  G  +E++  L   +  K + 
Sbjct: 525 HGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVS 584

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIF 202
           P+  + T  +    + + Y++ +++ 
Sbjct: 585 PNAASCTIVVDMLCKDEKYKKFVDLL 610



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/181 (15%), Positives = 79/181 (43%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +F  MK  G++   + + + L    K   + +   + N++     K +    + ++
Sbjct: 430 DAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLI 489

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+ E   E+   + +     D+ TYNI+I+ + + G ++    LF+ +      
Sbjct: 490 DGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCT 549

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD++ + + L  +         +++  +M+     P+  +  +++     +++ ++   L
Sbjct: 550 PDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDL 609

Query: 237 V 237
           +
Sbjct: 610 L 610



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/169 (16%), Positives = 77/169 (45%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + ++ +++    K G   + + +  +M   G+ PD    +++++ +   G++++ + +
Sbjct: 235 PGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHL 294

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
              M       D+ T+++LI+   + G + + + L + +  + + P+++T+ S +  +  
Sbjct: 295 FDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
                   E+F  M   G  PD  +   LI+      ++++   L   M
Sbjct: 355 VGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEM 403



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 22/117 (18%), Positives = 58/117 (49%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +FE++ + G+ P + ++ +++  + K G V     +  +M ++G  PD    N++L 
Sbjct: 501 AWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLC 560

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
            +    + E++ ++L  M +   + + ++  I++++  +    +K   L    P +R
Sbjct: 561 GFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPKFPVQR 617



 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 6/189 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F+ M R    P + S   LL   +K  + ++   + N+M  +GL PD F ++ + N
Sbjct: 75  AFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILAN 134

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               + +  +    +  + +  Y  ++ TY  LI        I +   LF  +      P
Sbjct: 135 CLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTP 194

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMID------AGCYPDGGTAKVLISACSSEDQIE 231
           + VT+ + +    +       L++ +EM++        C P   T  ++I       + +
Sbjct: 195 NAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED 254

Query: 232 QVTTLVRTM 240
           +   L   M
Sbjct: 255 EAKELFEEM 263


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M   GI PT+ ++ +++    K G++     +  QM K GL PD    N++++ YG+
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGK 179

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDVV 180
           +G  ++   +   M+      D+ TYN LIN + +  G +   E  F+ +  K LKP+V+
Sbjct: 180 IGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFE-FFREMKDKDLKPNVI 238

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++++ + A  ++ + +  ++ F +M   G  P+  T   LI A
Sbjct: 239 SYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDA 281



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 76/185 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F  M +  + P  +S    L   SK G           M  +G+ P  F  N M+ 
Sbjct: 81  AGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIG 140

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G       +   M+K     DI TYN LI+ YG+ G +++   LF+ +     +P
Sbjct: 141 HVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEP 200

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           DV+T+ + + ++ + K   R  E F EM D    P+  +   LI A   E  ++      
Sbjct: 201 DVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFF 260

Query: 238 RTMHK 242
             M +
Sbjct: 261 VDMTR 265



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 82/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A ++FE+MK++G+TP + ++  L+  Y K G + +   +  +M   G +PD    N+++N
Sbjct: 151 ARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALIN 210

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +     +  E    M+      ++ +Y+ LI+   + G ++     F  +    L P
Sbjct: 211 SFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLP 270

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +  T++S + A  +         + +EM+      +  T   L+     E  + +   L 
Sbjct: 271 NEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELF 330

Query: 238 RTMHK 242
           R M K
Sbjct: 331 RAMGK 335



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 87/195 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A   F EMK   + P + S+  L+ A  K G +         M + GL P+ F  +S+++
Sbjct: 221 AFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLID 280

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G   +   +   M +     +I TY  L++     G + + E LF+++    + P
Sbjct: 281 ANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTP 340

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           ++  +T+ +  + + +   + +E+F EM +    PD      ++    SE ++E+   ++
Sbjct: 341 NLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIM 400

Query: 238 RTMHKDMKTALPIYF 252
             M +    A P+ +
Sbjct: 401 TEMKESGIGANPVIY 415



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 32  FMLINFLLLQHTPNLFVFIFSIYF---------SDAHAVFEEMKRLGITPTMKSHMLLLT 82
           FML + +L +H  +L +  ++            ++A  +F  M + G+TP ++++  L+ 
Sbjct: 292 FMLADEMLQEHV-DLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIH 350

Query: 83  AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
            + K  ++ K   + N+M +  +KPD  +  +++       + E+ + ++T M++    A
Sbjct: 351 GHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGA 410

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           +   Y  L++ Y + G   +   L + +     +  VVT+ + +    ++ L +  +  F
Sbjct: 411 NPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYF 470

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
             M D    P+      LI      + I     L   M    K  +P
Sbjct: 471 GRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQD--KNMIP 515



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/243 (18%), Positives = 96/243 (39%), Gaps = 16/243 (6%)

Query: 43  TPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPNL  +   I+          A  +F EM+   I P +     ++        + +C+ 
Sbjct: 339 TPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKI 398

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           ++ +M +SG+  +  +  ++++ Y + G   +   +L  M        + T+  LI+   
Sbjct: 399 IMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLC 458

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +++    F  +P   L+P+V  +T+ +    +        ++F+EM D    PD  
Sbjct: 459 KRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKI 518

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY--------FNLYGEKGVARSNLGQ 267
               +I         ++   + R    +M   L +Y         +  G+   AR  L +
Sbjct: 519 AYTAMIDGNLKHGNFQEALNM-RNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAE 577

Query: 268 YIG 270
            IG
Sbjct: 578 MIG 580



 Score = 37.0 bits (84), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 5/175 (2%)

Query: 44  PNLFVFIFSIYF-----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           P ++  +   YF     ++A  + EEM+ LG   T+ +   L+    K G V +      
Sbjct: 412 PVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFG 471

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M    L+P+  V  ++++   +       +++   M+  +   D   Y  +I+   + G
Sbjct: 472 RMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHG 531

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             ++   +   +    ++ D+  +TS +   S+    ++  +   EMI  G  PD
Sbjct: 532 NFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPD 586


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +++EM +  + P   ++  L+    K+G ++    +I++MH  G   +    NS++
Sbjct: 353 EALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLI 412

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAKRL 175
           N   + GQ +K   ++  M+      D+ T NIL++ +  +G  ++  +GLFQ L  K  
Sbjct: 413 NGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGY 472

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+V T+   +  + ++ L      +  +M D+GC P+  T K++I A   + + ++   
Sbjct: 473 HPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEK 532

Query: 236 LVRTM 240
           L+  M
Sbjct: 533 LLCEM 537



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 88/184 (47%), Gaps = 1/184 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  +  +G+TP + S+ +++    K   V +   +  +MH+  + P+T   NS+++
Sbjct: 319 AKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLID 378

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+     +++  M    + A++ TYN LIN   + G ++K   L   +  + ++P
Sbjct: 379 GLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQP 438

Query: 178 DVVTWTSRL-AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           D+ T    L     + K  +    +F++++D G +P+  T  ++I     E  +++   L
Sbjct: 439 DMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYAL 498

Query: 237 VRTM 240
              M
Sbjct: 499 QSKM 502



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 8/198 (4%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  +F EM   GI+  + ++  ++  +   G + +  G +N+M    + PD ++ N++
Sbjct: 220 SEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTL 279

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+ ++ + VL  + K     ++ TYN LI+ Y +         +F ++    +
Sbjct: 280 VDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAK--------HVFNAVGLMGV 331

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV ++   +    + K     L +++EM      P+  T   LI       +I     
Sbjct: 332 TPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWD 391

Query: 236 LVRTMHKDMKTALPIYFN 253
           L+  MH     A  I +N
Sbjct: 392 LIDEMHDRGHHANVITYN 409



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 11/197 (5%)

Query: 16  RAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVF--IFSIYFSDAH--AVFEEMKRL--- 68
           R P   N +   +  H ML     ++HTP +  F  I   +    H   V    +RL   
Sbjct: 37  RPPSFENVDDALFQFHRMLC----MRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELK 92

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
            I P   +  +L+  +   G +     V++++ K G +PDT  + +++      GQ +K 
Sbjct: 93  AIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKA 152

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
                 +    +  D  +Y  LIN   + G       L + +  +  +P+VV + + +  
Sbjct: 153 LHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDC 212

Query: 189 YSRKKLYRRCLEIFEEM 205
             ++KL      +F EM
Sbjct: 213 LCKRKLVSEACNLFSEM 229



 Score = 43.9 bits (102), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/185 (16%), Positives = 75/185 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +V  ++ + G  P   +   L+      G V K     +++   G + D     +++N
Sbjct: 117 AFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLIN 176

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              ++G+     ++L  ++      ++  YN +I+   +   + +   LF  +  K +  
Sbjct: 177 GVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISA 236

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVT+++ +  +         L    EM+     PD      L+ A   E ++++   ++
Sbjct: 237 NVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVL 296

Query: 238 RTMHK 242
             + K
Sbjct: 297 AVIVK 301


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 113/249 (45%), Gaps = 17/249 (6%)

Query: 5   QCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIY-------FSD 57
           Q     L    R+P +      P  S  +  + + L+  PN + F   ++        +D
Sbjct: 174 QAANAVLSALARSPSTS-----PQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLAD 228

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +    M+  G++P + ++  LL A+ + G + +   ++ +M K G+ P     N++++
Sbjct: 229 ALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVS 288

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE---KMEGLFQSLPAKR 174
            Y RLG  ++   V+ AM    +  D+ TYN+L     + G ++   K++   + L    
Sbjct: 289 AYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSI-- 346

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDVVT+ + + A  + +     L + EEM D G      T  +++     E Q+E+  
Sbjct: 347 VSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEAL 406

Query: 235 TLVRTMHKD 243
             ++ M ++
Sbjct: 407 GRLKMMTEE 415



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 5/201 (2%)

Query: 50  IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + + YF +     A  +++EM +  +TP++ ++  L+      G + +    +N++ K G
Sbjct: 497 VMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKG 556

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           L PD    N +++ Y + G  EK  +    M +  +  D+ T N L+N     G +EK  
Sbjct: 557 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAI 616

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
            LF+S   K  K DV+T+ + + A  +       L  F +M   G  PD  T  V++SA 
Sbjct: 617 KLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSAL 676

Query: 225 SSEDQIEQVTTLVRTMHKDMK 245
           S   + E+   ++  + +  K
Sbjct: 677 SEAGRSEEAQNMLHKLDESGK 697



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 83/169 (49%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M   G+ P + ++  L+ AY K  NVAK   ++++M +SGLK DTF +N++L    +  +
Sbjct: 412 MTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKR 471

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
           +E+ EE+L +  +  +  D  +Y  ++  Y +    E    L+  +  ++L P + T+ +
Sbjct: 472 YEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNT 531

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +            ++   E++  G  PD  T  ++I A   E  +E+ 
Sbjct: 532 LIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKA 580



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 89/193 (46%), Gaps = 3/193 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  + EEM+  G+  ++ +H +++    + G + +  G +  M + GL PD    N++
Sbjct: 368 SDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTL 427

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ Y +     K   ++  M +     D  T N L+    +    E+ E L +S P +  
Sbjct: 428 IDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGF 487

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD V++ + +AAY ++      L +++EM      P   T   LI    +   I ++T 
Sbjct: 488 VPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCT---IGKLTE 544

Query: 236 LVRTMHKDMKTAL 248
            +  +++ MK  L
Sbjct: 545 AIDKLNELMKKGL 557



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 2/190 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF  +  L + P   +  LL+  +   G +A     ++ M   GL PD    N++L  + 
Sbjct: 197 VFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHC 256

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G   +   +L  M+K   A   +TYN L++ Y R G+I++   + +++ A   +PD+ 
Sbjct: 257 RKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLW 316

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
           T+    A   +        ++ +EM       PD  T   L+ AC    +      L+  
Sbjct: 317 TYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEE 376

Query: 240 MH-KDMKTAL 248
           M  K +K++L
Sbjct: 377 MRDKGVKSSL 386



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 36/221 (16%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +   MK+ GI PT  ++  L++AY++ G + +   V+  M   G +PD +  N 
Sbjct: 261 LGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNV 320

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAA-DISTYNILI---------------------- 151
           +     + G+ ++  ++   ME  S  + D+ TYN L+                      
Sbjct: 321 LAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDK 380

Query: 152 ---------NIYGRG----GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
                    NI  +G    G +E+  G  + +  + L PDV+T+ + + AY + +   + 
Sbjct: 381 GVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKA 440

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
             + +EM+ +G   D  T   L+     E + E+   L+R+
Sbjct: 441 FVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRS 481



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 1/188 (0%)

Query: 56  SDAHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +A  + +EM+ L I +P + ++  L+ A  K    +    ++ +M   G+K      N 
Sbjct: 332 DEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNI 391

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    R GQ E+    L  M +   A D+ TYN LI+ Y +   + K   L   +    
Sbjct: 392 VVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSG 451

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LK D  T  + L    ++K Y    E+       G  PD  +   +++A   E++ E   
Sbjct: 452 LKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPAL 511

Query: 235 TLVRTMHK 242
            L   M K
Sbjct: 512 YLWDEMSK 519


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 90/161 (55%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + ++ +++  Y + G +A+ E ++ +M + GLKP+T    +++  + + G F++  E+
Sbjct: 212 PNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFEL 271

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           +  M++  +  +I TYN +I+ + + G I++   + +   ++ LK D +T+T  +  + +
Sbjct: 272 MNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCK 331

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +      L++F+ M++ GC PD      LIS    + Q+E+
Sbjct: 332 QGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEE 372



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 78/186 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  +MK+ G  P + ++  ++  + K G + +   V+      GLK D      
Sbjct: 265 FDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTI 324

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + G      ++   M +     DI  Y  LI+ Y +   +E+ +  F       
Sbjct: 325 LITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 384

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P   T+TS +A Y +       L +FE M+  GC+ D  T   LIS    E ++E+  
Sbjct: 385 LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAK 444

Query: 235 TLVRTM 240
            L   M
Sbjct: 445 ALYEGM 450



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 85/185 (45%), Gaps = 1/185 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F D    F  M   G  P + ++   +    K   V +   V+ +M   GLKP+ +   +
Sbjct: 124 FKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT 183

Query: 115 MLNLYGRLGQFEKMEEV-LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++   ++G  E+   + L  ++  SY  ++ TY ++I  Y R G + + E L   +  +
Sbjct: 184 LIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQ 243

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            LKP+  T+T+ +  + +   + R  E+  +M   G  P+  T   +I     + +I++ 
Sbjct: 244 GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEA 303

Query: 234 TTLVR 238
             ++R
Sbjct: 304 YKVLR 308



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 87/204 (42%), Gaps = 2/204 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  VF+ M R G++P  +    L+    + G V + + ++  M + G   D      
Sbjct: 54  FVYARKVFDGMTRAGVSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTV 113

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G+F+ + E    M +     ++  Y   I+   +  ++++   + + +  + 
Sbjct: 114 VVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRG 173

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSEDQIEQV 233
           LKP+V T T+ +    +     R   +F ++I +  Y P+  T  V+I     E ++ + 
Sbjct: 174 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARA 233

Query: 234 TT-LVRTMHKDMKTALPIYFNLYG 256
              LVR + + +K     Y  L G
Sbjct: 234 EMLLVRMVEQGLKPNTNTYTTLIG 257



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 76/160 (47%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM+  G+   +++   +L    +TG+      V + M ++G+ P      +++ +  R G
Sbjct: 28  EMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGFGALVVVCCREG 87

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           + E+++ +L AM +  ++ D +T  +++      G  + +   F+ +      P+VV +T
Sbjct: 88  KVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYT 147

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + +    +++  ++   + EEM+  G  P+  T   LI  
Sbjct: 148 AWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDG 187



 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+ M   G  P ++++  L++ Y +   + + +   ++    GL P      SM+ 
Sbjct: 338 ALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIA 397

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y ++G+      V   M +    AD  TY  LI+   +   +E+ + L++ +  KRL P
Sbjct: 398 GYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVP 457

Query: 178 DVVTWTSRLAAYSRKK 193
             VT  +    Y R++
Sbjct: 458 CEVTRVTLTFEYCRRE 473


>gi|410110147|gb|AFV61153.1| pentatricopeptide repeat-containing protein 123, partial [Phyla
           nodiflora]
          Length = 419

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 89/187 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A ++  EMK  G+ P   S+  LLT Y +     +   V ++M +     D    N 
Sbjct: 80  FREARSLIXEMKTAGVMPXTTSYSTLLTMYVENXKFLEALSVFSEMREXKCLXDLXTCNI 139

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG      +   LF+ +  K 
Sbjct: 140 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 199

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++ +VVT+ S +  Y +   + +   + +EM   G  P+  T   +IS      ++++  
Sbjct: 200 IEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAA 259

Query: 235 TLVRTMH 241
            L + + 
Sbjct: 260 MLFQKLR 266



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 77/151 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +K  G  P + ++  ++  + K     +   +I +M  +G+ P T   ++
Sbjct: 45  YSKAISIFSRLKXSGXXPDLXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYST 104

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V + M +     D+ T NI+I++YG+ G  ++ + LF  +    
Sbjct: 105 LLTMYVENXKFLEALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMG 164

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 165 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 195



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 152 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMI 211

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 212 MIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVE 271

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D + + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 272 IDQILFQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDTAIHILAGAGRIEEATYV 327

Query: 237 VR 238
            R
Sbjct: 328 FR 329



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 90/178 (50%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L +++ +  F +A +VF EM+       + +  +++  Y + G   + + +   M K G+
Sbjct: 106 LTMYVENXKFLEALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 165

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +P+    N++L +YG    F +   +   M++ +   ++ TYN +I IYG+    EK   
Sbjct: 166 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANN 225

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L Q + ++ ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 226 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 283



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 89/186 (47%), Gaps = 6/186 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG++ D  +  +M+ 
Sbjct: 223 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 282

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +  I+I    G IE+   +F Q++ +  +K
Sbjct: 283 AYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDSGEVK 338

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+  +   +   S+ K Y   +E+F++M   G +PD     V+++A     + ++ + +
Sbjct: 339 -DITVFERMIHLLSKYKKYMNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLHEFDKASDI 397

Query: 237 VRTMHK 242
              M +
Sbjct: 398 YMEMQE 403



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 59/143 (41%)

Query: 81  LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140
           +T + K G        + +M    +  D  + ++++ L  +L  + K   + + ++    
Sbjct: 1   ITHFGKEGLFDXALSWLQKMEXDXVPGDLVLXSNLIELSRKLCDYSKAISIFSRLKXSGX 60

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             D+  YN +IN++G+     +   L   +    + P   ++++ L  Y     +   L 
Sbjct: 61  XPDLXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMYVENXKFLEALS 120

Query: 201 IFEEMIDAGCYPDGGTAKVLISA 223
           +F EM +  C  D  T  ++I  
Sbjct: 121 VFSEMREXKCLXDLXTCNIMIDV 143


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
           ++S  +++    + G V + + ++N+M   G+ P  F  N++LN        E ++E+L 
Sbjct: 182 VQSLTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDREGVDEILG 241

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            ME+    A + TY ILI  Y     I + E +++ +  + ++ DV  +TS ++   R  
Sbjct: 242 LMEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAG 301

Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
             RR   +F+EMI  G  P+  T   LIS      Q+E    L+  M 
Sbjct: 302 NVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQ 349



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 41/251 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A A+F+EM   GI P   +   L++   K G +   E ++ +M   G+  +  + N+M++
Sbjct: 306 ASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMD 365

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL--------------------------- 150
            Y + G  ++   +   ME+  + AD+ TYNIL                           
Sbjct: 366 GYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAP 425

Query: 151 --------INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
                   I IY + G + + E   +++  + + P++VT+ + + AYS+ +  ++   + 
Sbjct: 426 NVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLK 485

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQV-----TTLVRTMHKDMKTALPIYFNLYGE 257
            EM++ G  PD  T   LI      D++++        LV+ +  ++KT   I   L  E
Sbjct: 486 AEMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKE 545

Query: 258 KGVARSNLGQY 268
            G A   L  Y
Sbjct: 546 -GRADEALKLY 555



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 80/178 (44%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           M+R G    + ++ +L +   K     + + V+N M + G+ P+     + + +Y + G 
Sbjct: 383 MERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGN 442

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             + E  L  +EK     +I TYN LI+ Y +   +++   L   +  K L PDV T+TS
Sbjct: 443 LAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTS 502

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
            +            L++F EM+  G   +  T   +IS  S E + ++   L   M +
Sbjct: 503 LIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMMR 560



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 81/169 (47%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           + +A  V   M   G+ P + +    +  Y + GN+A+ E  +  + K G+ P+    N+
Sbjct: 408 YEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNT 467

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y +  + ++   +   M +     D+ TY  LI+       +++   LF  +  K 
Sbjct: 468 LIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKG 527

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++ +V T+T+ ++  S++      L++++EM+  G  PD    + L+ +
Sbjct: 528 IRGNVKTYTAIISGLSKEGRADEALKLYDEMMRMGLIPDDRVFEALVGS 576


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 8/208 (3%)

Query: 54  YFSDAH-----AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           YF   H     A+F EM+R G+ P + ++  L+  + +TG       + ++M   G+  +
Sbjct: 83  YFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHN 142

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N ++    R  + +   ++  AM +      I T+N+LI+ YG+ G +      F 
Sbjct: 143 VVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFN 202

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            + A  L P VVT+   +  + R +   R +  F +M + G  P   T  +LI+A + E+
Sbjct: 203 QMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKEN 262

Query: 229 QIEQVTTLVRTMHKDMKTALPIYFNLYG 256
           ++++   ++  M    K  L +    YG
Sbjct: 263 EMDRAFMMLSEME---KAGLEVDVQSYG 287



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 36/232 (15%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  +FE M+R GI P++ +  LL+  Y K G +A      NQM  +GL P     N 
Sbjct: 159 LKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNE 218

Query: 115 MLNLYGR-----------------------------LGQFEKMEEV------LTAMEKGS 139
           ++  + R                             +  F K  E+      L+ MEK  
Sbjct: 219 LICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAG 278

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D+ +Y +L++     G +     LFQS+  K +KP+ V +   +  Y R+    + L
Sbjct: 279 LEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKAL 338

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPI 250
            +  EM   G  P+  +  + I    +E + ++   L+  M H  ++T+  I
Sbjct: 339 RLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEALIDDMEHAGLQTSETI 390



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 15/229 (6%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PNL+ +   I        F  A  +F+EM   G+   + S+ +L+    +   +     +
Sbjct: 106 PNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQL 165

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              M + G++P     N +++ YG+ G+          M+       + TYN LI  + R
Sbjct: 166 FEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCR 225

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              I +    F  +  + L P  VT+T  +AA++++    R   +  EM  AG   D  +
Sbjct: 226 VRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQS 285

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALP--IYFNL----YGEKG 259
             VL+ A   E ++     L ++M  D+K   P  + +++    YG +G
Sbjct: 286 YGVLLHALCMEGKMMHARKLFQSM--DLKGVKPNSVLYDMMIYGYGREG 332



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           ++G+VA+   V + M + G+ P+     +++N Y   G  E    +   M +     ++ 
Sbjct: 50  QSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLY 109

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN LI  + R G  +    LF  +P K +  +VV++   +A   R    +  +++FE M
Sbjct: 110 TYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAM 169

Query: 206 IDAGCYPDGGTAKVLIS 222
              G  P   T  +LI 
Sbjct: 170 RREGIRPSIVTFNLLID 186



 Score = 43.5 bits (101), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 81/199 (40%), Gaps = 19/199 (9%)

Query: 65  MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
           ++RL +   ++S + +L   +K+G+ A                D     +++++  + G 
Sbjct: 9   VRRLCVAAEVRSALAVLARGTKSGDAA---------------LDVAACTALVHVCCQSGD 53

Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
             +   V   M +   A +  TY  LIN Y   G  E    LF  +    ++P++ T+  
Sbjct: 54  VAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNC 113

Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
            +  + R   ++    +F+EM   G   +  +  +LI+      +++    L   M ++ 
Sbjct: 114 LIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREG 173

Query: 245 KTALPIYFNL----YGEKG 259
                + FNL    YG+ G
Sbjct: 174 IRPSIVTFNLLIDGYGKAG 192


>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g38730-like [Brachypodium distachyon]
          Length = 599

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 5/197 (2%)

Query: 42  HTPNLFVFIFSIYFS----DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
           H P+  +   S   S    DA  VF++M+  G+ P   +   LLTA ++    A    V 
Sbjct: 110 HVPSWLLLALSHSHSARPHDAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKVF 169

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
           N+M ++G+  +T V N+ML++  +     + E ++T M+      D  ++N +I +Y R 
Sbjct: 170 NEMGRAGVAMNTHVYNAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVRK 229

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
           G   +   + + +  + ++PD+VTW + +    ++   +   ++  +MI A   PD  T 
Sbjct: 230 GMQYEAMCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTY 289

Query: 218 KVLISA-CSSEDQIEQV 233
             L+   C   D  E V
Sbjct: 290 TTLVDGYCRIGDVGEAV 306



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 2/184 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           AH VF EM R G+      +  +L    K  +  + EG++ +M  +G+  D F  N+++ 
Sbjct: 165 AHKVFNEMGRAGVAMNTHVYNAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIA 224

Query: 118 LYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           LY R G Q+E M  V   M+      DI T+N +I+   + G +++   L   + A  ++
Sbjct: 225 LYVRKGMQYEAM-CVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVE 283

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD VT+T+ +  Y R       +++ EEM   G  P   T   +I     + ++++V  L
Sbjct: 284 PDTVTYTTLVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGL 343

Query: 237 VRTM 240
           +  M
Sbjct: 344 LSEM 347



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 88/185 (47%), Gaps = 1/185 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V E M+  G+ P + +   ++    K G + +   +   M  + ++PDT    +++
Sbjct: 234 EAMCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLV 293

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R+G   +  ++   ME G     ++TYN +I      G ++++ GL   +  ++++
Sbjct: 294 DGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQ 353

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIEQVTT 235
            D VT  + + +Y+++       ++ + M+++G   D  T K LI   C +++  E    
Sbjct: 354 ADHVTCNTLINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEA 413

Query: 236 LVRTM 240
           L   M
Sbjct: 414 LFEMM 418



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 79/200 (39%)

Query: 41  QHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
           +H P    FI  +      +    +  L   P + S +LL  ++S +        V +QM
Sbjct: 78  RHHPAARAFILDLSLRHPLSSPLLLPSLLSEPHVPSWLLLALSHSHSARPHDAARVFDQM 137

Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
              GL PD     ++L    R        +V   M +   A +   YN ++++  +    
Sbjct: 138 RARGLAPDAHACTALLTALARARMTATAHKVFNEMGRAGVAMNTHVYNAMLHVCLKARDA 197

Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
            + EGL   + A  +  D  ++ + +A Y RK +    + + E M D G  PD  T   +
Sbjct: 198 LRAEGLMTRMDAAGVPLDRFSFNTVIALYVRKGMQYEAMCVRERMQDEGVEPDIVTWNTV 257

Query: 221 ISACSSEDQIEQVTTLVRTM 240
           I     E ++++   L   M
Sbjct: 258 IHGLCKEGRMKEAAQLRTDM 277



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 2/160 (1%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           EEM+  G+ P + ++  ++    + G + +  G++++M    ++ D    N+++N Y + 
Sbjct: 310 EEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQADHVTCNTLINSYAKR 369

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI-EKMEGLFQSLPAKRLKPDVVT 181
           G      +V   M +     D  TY  LI+ + +   + E  E LF+ +  +   P+   
Sbjct: 370 GDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMM-GRGFSPNYSV 428

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           ++  +  + +K      L I +E+I  G  PD    + LI
Sbjct: 429 FSWLVDGFCKKNNTDAVLLIPDELIKRGLPPDKSVYRSLI 468



 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/174 (17%), Positives = 77/174 (44%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           L+ +Y+K G++     V  +M +SGL+ D F   ++++ + +  + ++ +E L  M    
Sbjct: 362 LINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMMGRG 421

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           ++ + S ++ L++ + +    + +  +   L  + L PD   + S +    +K L     
Sbjct: 422 FSPNYSVFSWLVDGFCKKNNTDAVLLIPDELIKRGLPPDKSVYRSLIRRLCKKGLVDLAQ 481

Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           ++  +M   G   D      L  A  +  ++   + ++  M +   +  P  +N
Sbjct: 482 KVLHQMQGKGLEVDCLVYATLAYAHLTAGKVAAASDILNEMARKQMSVTPQIYN 535



 Score = 37.0 bits (84), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 40/93 (43%)

Query: 63  EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122
           +E+ + G+ P    +  L+    K G V   + V++QM   GL+ D  V  ++   +   
Sbjct: 450 DELIKRGLPPDKSVYRSLIRRLCKKGLVDLAQKVLHQMQGKGLEVDCLVYATLAYAHLTA 509

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           G+     ++L  M +   +     YN L   YG
Sbjct: 510 GKVAAASDILNEMARKQMSVTPQIYNCLCTSYG 542


>gi|302807738|ref|XP_002985563.1| hypothetical protein SELMODRAFT_11063 [Selaginella moellendorffii]
 gi|300146769|gb|EFJ13437.1| hypothetical protein SELMODRAFT_11063 [Selaginella moellendorffii]
          Length = 299

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 8/188 (4%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +DA A+F+ MK      ++ S  +++TA+++ G + +      QM   G+ P+     +
Sbjct: 22  LADAIAIFDRMK----NRSVFSWTIMVTAFAQNGQLQRAIQCYRQMCCDGVDPNAVTFVA 77

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L      G+     ++   +E     +D+   + ++N YG+ G +++    F  +PAK 
Sbjct: 78  LLAACSSGGELAAGRKIAARVEASGLDSDLIVGSAIVNFYGKCGRLDEAREAFDRMPAKN 137

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
              DVV+WT+ +AAY +       L + ++M   G  PD      ++ AC++     Q T
Sbjct: 138 NNVDVVSWTNMIAAYVQHGQSSSALLLAKKMDLEGVKPDEIAMSTILGACTA----HQAT 193

Query: 235 TLVRTMHK 242
           +L R +H+
Sbjct: 194 SLGRELHR 201



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 1/171 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F+ M        + S   ++ AY + G  +    +  +M   G+KPD   +++
Sbjct: 123 LDEAREAFDRMPAKNNNVDVVSWTNMIAAYVQHGQSSSALLLAKKMDLEGVKPDEIAMST 182

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L             E+     +  YA++    N L+ +YG  G ++    +FQ L    
Sbjct: 183 ILGACTAHQATSLGRELHRRARELGYASNTIVGNALVFMYGSWGRVDDAARVFQELKNAN 242

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
             PD  T+T+ +A Y+R+    + L ++ EM   G  P   T   +  ACS
Sbjct: 243 -SPDSNTFTAMIAGYARQGRTLQALSLYNEMNLHGVEPRDATFTSIFQACS 292


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 89/185 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  +F+EM    +TP   ++  L+    K+G ++    +I++++  G   +    NS+
Sbjct: 351 DEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSL 410

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LN   +  Q +K   +LT M+      D+STY  L++   + G ++  + ++Q L  K  
Sbjct: 411 LNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGY 470

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
             ++  +T  +    ++  +   L +  +M D GC PD  T + LISA    ++  +   
Sbjct: 471 PLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVK 530

Query: 236 LVRTM 240
           L+R M
Sbjct: 531 LLREM 535



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 93/197 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA+ ++ EM    I P + +   L+  +   G + +  G++N+M  + + P+ +  N ++
Sbjct: 212 DAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILI 271

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +   + G+ +K   VL+ M K     ++ TY  L++ Y     + K + +F ++  + + 
Sbjct: 272 DGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVT 331

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+V +++  +    + K+    +++F+EM      P+  T   LI       +I  V  L
Sbjct: 332 PNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDL 391

Query: 237 VRTMHKDMKTALPIYFN 253
           +  ++   + A  I +N
Sbjct: 392 IDEINNRGQPANIITYN 408



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 91/207 (43%), Gaps = 7/207 (3%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN+  F   IY         +A  +  EM    + P + +  +L+    K G V K   V
Sbjct: 227 PNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSV 286

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++ M K G++P+     S+++ Y  + +  K + V   +       ++ +Y+++IN   +
Sbjct: 287 LSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCK 346

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +++   LF+ +  K + P+ VT++S +    +        ++ +E+ + G   +  T
Sbjct: 347 NKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIIT 406

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
              L++      Q+++   L+  M  +
Sbjct: 407 YNSLLNGLCKNHQVDKAIALLTKMKDE 433



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 20/214 (9%)

Query: 41  QHTPNLFVF--IFSI-----YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
            HTP +F F  I S      +F  A +  ++M+  GI P M +  +L+  +S    +   
Sbjct: 48  NHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFA 107

Query: 94  EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
             ++ ++ K G +PDT  +N++L      G+ ++       + +  +  D  +Y  LIN 
Sbjct: 108 FSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLING 167

Query: 154 YGRGG-------FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
             + G        + K+EGL        ++PDV+ +T+ + ++ + KL     +++ EMI
Sbjct: 168 LCKSGETRAALQLLRKIEGLL------LVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMI 221

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
               YP+  T   LI       Q+++   L+  M
Sbjct: 222 VKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEM 255



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 81/174 (46%)

Query: 68  LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127
           L + P +  +  ++ ++ K   V     + ++M    + P+    NS++  +  +GQ ++
Sbjct: 188 LLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKE 247

Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
              +L  M   +   ++ T+NILI+   + G ++K   +   +  + ++P+VVT+TS + 
Sbjct: 248 AVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMD 307

Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
            Y   K   +   +F  +   G  P+  +  V+I+       +++   L + MH
Sbjct: 308 GYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMH 361



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 67/152 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            SD   + +E+   G    + ++  LL    K   V K   ++ +M   G++PD     +
Sbjct: 385 ISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTT 444

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G+ +  + +   +    Y  +I  Y ++IN   + GF ++   L   +    
Sbjct: 445 LVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNG 504

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
             PD VT+ + ++A  +     + +++  EMI
Sbjct: 505 CMPDAVTYETLISALFKNNKNGKAVKLLREMI 536


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 8/179 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  DA  +F  +    I   + +  +++  Y++ G   K      QM + G+KP+ F + 
Sbjct: 582 FLEDAETIFNRL----IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLA 637

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S L+   R+   +   ++ +   K   + D+   + L+++Y + G +E  E +F  L ++
Sbjct: 638 SSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSR 697

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
               D V+W + +  YS+     + L+ FE M+D G  PD  T   ++SACS    IE+
Sbjct: 698 ----DTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEE 752



 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+   Y S A  +F EM+R G+     ++   L A S   ++   + V  +  K G   D
Sbjct: 204 FVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSD 263

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
            FV +++++LY + G+    E V   M K     +  ++N L+N + + G  EK+  LF 
Sbjct: 264 LFVGSALVDLYAKCGEMVLAERVFLCMPK----QNAVSWNALLNGFAQMGDAEKVLNLFC 319

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            +    +     T ++ L   +     R    +    I  GC  D
Sbjct: 320 RMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELD 364



 Score = 41.6 bits (96), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 4/144 (2%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           LL  +++ G+  K   +  +M  S +    F ++++L      G     + V +   +  
Sbjct: 301 LLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIG 360

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
              D      L+++Y + G       +F  +      PDVV+W++ +    +K   R   
Sbjct: 361 CELDEFISCCLVDMYSKCGLAGDALKVFVRIE----DPDVVSWSAIITCLDQKGQSREAA 416

Query: 200 EIFEEMIDAGCYPDGGTAKVLISA 223
           E+F+ M  +G  P+  T   L+SA
Sbjct: 417 EVFKRMRHSGVIPNQFTLASLVSA 440



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L T  SK G++ + + +  Q+ KSG+ PD+ + NS++N+Y + G      +V   + + 
Sbjct: 134 MLRTCASK-GDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE- 191

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               D+ ++  LI  +   G+      LF  +  + ++ +  T+ + L A S        
Sbjct: 192 ---RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFG 248

Query: 199 LEIFEEMIDAGCYPD 213
            ++  E I  G + D
Sbjct: 249 KQVHAEAIKVGDFSD 263


>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
 gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
          Length = 697

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 79/156 (50%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ +M +LG  P   +  +L+  +SK G ++K   +  +M + GL  D F   ++++
Sbjct: 525 AWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIID 584

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y R+G  ++   +   M++ +   ++ TY  L++ + +   ++    L   +    + P
Sbjct: 585 GYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTP 644

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           DV T+T+ +A Y R +   R  E+F+EM   G  PD
Sbjct: 645 DVKTYTALIAGYQRIENIDRAYEVFDEMKKKGTLPD 680



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 5/199 (2%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           VF  +   +DA  VF + K++G+   + S   LL   ++   +     + + +  SG  P
Sbjct: 124 VFASNKMLADAKDVFMQAKKIGVELNISSCNFLLKCLAEGDKLEAVRSLFDDLKNSGPSP 183

Query: 108 DTFVINSMLNLY--GRLGQFEKMEE---VLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
           + +    M+N Y   R GQ   ME+   +L  ME+      + TY + I+   R G IE 
Sbjct: 184 NVYTYTIMINFYCKERHGQNIDMEQASLILEEMEEKGENPTVVTYGVYIHGLCRVGSIED 243

Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
                Q L +     ++  + + +  + +K      L++ EEM D G  PD  +  +L++
Sbjct: 244 AWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILVN 303

Query: 223 ACSSEDQIEQVTTLVRTMH 241
           A  +E  IE    L++ M 
Sbjct: 304 AFCTEGDIESGMNLIQEME 322



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ +  EM++ G+ P    ++ L+  Y + G + +       M + GL+PD    N +++
Sbjct: 384 ANNLVHEMRKNGLVPDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVD 443

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y   GQFE+    +  M+  +   +  TY+++IN   +   +EK   +   +    + P
Sbjct: 444 QYCSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFP 503

Query: 178 DVVTWTSRLAAYSRK-KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            V+ +T+ +  Y+++ K   +  +++ +M   GC PD  T  VL+   S   ++ +   L
Sbjct: 504 SVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNL 563

Query: 237 VRTMHKD 243
            + M ++
Sbjct: 564 FKEMAEE 570



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 16/242 (6%)

Query: 43  TPNLFVFIFSIYF------------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV 90
           +PN++ +   I F              A  + EEM+  G  PT+ ++ + +    + G++
Sbjct: 182 SPNVYTYTIMINFYCKERHGQNIDMEQASLILEEMEEKGENPTVVTYGVYIHGLCRVGSI 241

Query: 91  AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150
                 I  +  S    + +  N+++  + + G+ ++  ++L  M+    + DI +Y+IL
Sbjct: 242 EDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSIL 301

Query: 151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
           +N +   G IE    L Q +     KP +V  TS L     K L   CL  F E+   G 
Sbjct: 302 VNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKGY 361

Query: 211 YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD-MKTALPIYFNL---YGEKGVARSNLG 266
             D  +   LI        ++    LV  M K+ +     IY +L   Y  KG  +  L 
Sbjct: 362 KHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGCLKEALK 421

Query: 267 QY 268
            +
Sbjct: 422 NF 423



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 102/250 (40%), Gaps = 5/250 (2%)

Query: 3   KPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIY--FSDAHA 60
           +P   TC+  V Q          L Y +     N L   +T ++ +     Y     A  
Sbjct: 432 QPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWE 491

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKT-GNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           V   M +  I P++  +  ++  Y+K   N  K   +  +M K G KPD   +  +++++
Sbjct: 492 VLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLVDMF 551

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G+  K   +   M +   + D   +  +I+ Y R G +++   +++ +    + P+V
Sbjct: 552 SKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKRNNVTPNV 611

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
            T+T  +  + + K       + ++M      PD  T   LI+     + I++   +   
Sbjct: 612 KTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDRAYEVFDE 671

Query: 240 MHKDMKTALP 249
           M K  K  LP
Sbjct: 672 MKK--KGTLP 679



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 85/223 (38%), Gaps = 35/223 (15%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF----- 110
            +A  + EEMK  GI+P + S+ +L+ A+   G++     +I +M     KP        
Sbjct: 277 DEALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTSV 336

Query: 111 --------VINSMLNLYGRLGQ----------------FEKMEEVLTA------MEKGSY 140
                   ++N  LN +  L                  F K   V +A      M K   
Sbjct: 337 LMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGL 396

Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
             D   Y  LI  Y R G +++    F ++    L+PD++T    +  Y  +  +   L 
Sbjct: 397 VPDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALI 456

Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
              +M D    P+  T  V+I+       +E+   ++  M KD
Sbjct: 457 YINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKD 499



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 61/129 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S A  +F+EM   G++    +   ++  Y + GNV +   +  +M ++ + P+      +
Sbjct: 558 SKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCL 617

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++ + +L + +    ++  M++ S   D+ TY  LI  Y R   I++   +F  +  K  
Sbjct: 618 VDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDRAYEVFDEMKKKGT 677

Query: 176 KPDVVTWTS 184
            PD + + +
Sbjct: 678 LPDHIAYLT 686


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 7/218 (3%)

Query: 44  PNLFVFI--FSIYF-SD----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN  ++I     YF SD      + F+ M   G+    + + +L+   S +GN+     V
Sbjct: 592 PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 651

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           ++ + K+G  PD  V +S+++   +    EK   +L  M K     +I  YN LI+   +
Sbjct: 652 LSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCK 711

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
            G I     +F S+ AK L P+ VT+TS +    +         ++ EM+  G  PD   
Sbjct: 712 SGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFV 771

Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
             VL + CSS   +EQ   L+  M      ++  + NL
Sbjct: 772 YSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNL 809



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 87/184 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  +  EM+  GI+P + ++ +++    ++G   K   ++ +M   GLKP+ FV   ++
Sbjct: 437 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 496

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y R G      E+   M K +   D+  YN LI    + G +E+    F  +  + L 
Sbjct: 497 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 556

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+  T++  +  Y +        ++ + M+D G  P+      L+ +    D IE+V++ 
Sbjct: 557 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 616

Query: 237 VRTM 240
            ++M
Sbjct: 617 FKSM 620



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 7/208 (3%)

Query: 43  TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PN++ +   I+          A  + EEM   G+ P    +  L++ Y + GNV+    
Sbjct: 451 SPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACE 510

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + ++M K  + PD +  NS++    ++G+ E+  +    M++     +  TY+ LI+ Y 
Sbjct: 511 IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYL 570

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
           + G +E  E L Q +    LKP+ V +   L +Y +     +    F+ M+D G   D  
Sbjct: 571 KNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNR 630

Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKD 243
              +LI   SS   +E    ++  + K+
Sbjct: 631 IYGILIHNLSSSGNMEAAFRVLSGIEKN 658



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 2/200 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + +EM   G+ P   ++  L+    K G + +   ++ QM +   +PDT   N ++
Sbjct: 367 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 426

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R    +    +L+ ME    + ++ TY+I+I+   + G  EK   L + +  K LK
Sbjct: 427 EGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 486

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P+   +   ++ Y R+       EIF++M      PD      LI   S   ++E+ T  
Sbjct: 487 PNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKY 546

Query: 237 VRTMHKDMKTALPIYFNLYG 256
              M +  +  LP  F   G
Sbjct: 547 FAQMQE--RGLLPNEFTYSG 564



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 35/236 (14%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  V   M+  G+ P+++    LL    +   +A    V   M  +G+ PD +  ++++
Sbjct: 192 DAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLI 251

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG----------- 165
             Y ++ +F+  ++VL  M +     +  TYN+LI    R G +E+  G           
Sbjct: 252 EAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLV 311

Query: 166 ------------------------LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
                                   L   +    LKP+VV + + +  + R+       ++
Sbjct: 312 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 371

Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGE 257
            +EM+ AG  P+  T   L+       Q+++ + L++ M +D      I +NL  E
Sbjct: 372 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 427



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/184 (17%), Positives = 84/184 (45%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A    ++M+  G+ P   ++  L+    K+    + + ++++M  + LKP+  V  +++
Sbjct: 297 EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLI 356

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + + R G  ++  +++  M       +  TY+ L+    + G +++   L + +     +
Sbjct: 357 DGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHR 416

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PD +T+   +  + R    +    +  EM +AG  P+  T  ++I       + E+ + L
Sbjct: 417 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 476

Query: 237 VRTM 240
           +  M
Sbjct: 477 LEEM 480



 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  +   G+ P   ++  L+    K G+++    + N+M  +G+ PD FV + +  
Sbjct: 718 ARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTT 777

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G  E+   ++  M    +A+ IS++N L++ + + G +++   L   +  + L P
Sbjct: 778 GCSSAGDLEQAMFLIEEMFLRGHAS-ISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVP 836

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           + +T  + ++  S          IF E+
Sbjct: 837 NALTIENIISGLSEAGKLSEVHTIFVEL 864


>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           barbata]
          Length = 364

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EMK  G+ P   S+  LLT Y +     +   V +
Sbjct: 22  LVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTLLTMYVENKKFLEALSVFS 81

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 82  EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 141

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM   G  P+  T  
Sbjct: 142 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 201

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 202 TIISIWGKVGKLDRAAMLFQKLR 224



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 82/151 (54%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +KR G TP + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYST 62

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V + M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 153



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 110 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 169

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 170 MIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVE 229

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D + + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 230 IDQILFQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDTAIHILAGAGRIEEATYV 285

Query: 237 VR 238
            R
Sbjct: 286 FR 287



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 86/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y + G   + + +   M K G++P+    N+
Sbjct: 73  FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 132

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   L Q + ++ 
Sbjct: 133 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG 192

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 193 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 241



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 81/167 (48%), Gaps = 6/167 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  GI P   ++  +++ + K G + +   +  ++  SG++ D  +  +M+ 
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 240

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +  I+I    G IE+   +F Q++ A  +K
Sbjct: 241 AYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 296

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            D+  +   +   S+ K Y    E+F++M   G +PD     V+++A
Sbjct: 297 -DITVFERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSNVIAVVLNA 342



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/100 (20%), Positives = 45/100 (45%)

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
            + K   + + +++  +  D+  YN +IN++G+     +   L   +    + P+  +++
Sbjct: 2   DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYS 61

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + L  Y   K +   L +F EM +  C  D  T  ++I  
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDV 101



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
           LL+ Y K  NV +   V ++M   G  PD+ VI  +LN YG+L +F+K  +V   M++
Sbjct: 307 LLSKYKKYSNVXE---VFDKMRGLGYFPDSNVIAVVLNAYGKLXEFDKANDVYMEMQE 361


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 90/187 (48%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  +A ++  EMK   I P + +  +L+ A SK G + + + ++  M K+ +KPD F  N
Sbjct: 247 HLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYN 306

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++ Y  + + +  + V  +M +     D+  Y  +IN   +   +++   LF+ +  K
Sbjct: 307 SLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHK 366

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + PD+VT+ S +    +     R + + + M + G  PD  +  +L+       ++E  
Sbjct: 367 NMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDA 426

Query: 234 TTLVRTM 240
             + + +
Sbjct: 427 KEIFQRL 433



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 87/186 (46%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  V+ EM   GI+P + ++  L+  +   G++ +   ++N+M    + P+    N 
Sbjct: 213 LGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNI 272

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   + G+ ++ + +L  M K     D+ TYN LI+ Y     ++  + +F S+  + 
Sbjct: 273 LIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRG 332

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + PDV  +T+ +    + K+    + +FEEM      PD  T   LI        +E+  
Sbjct: 333 VTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAI 392

Query: 235 TLVRTM 240
            L + M
Sbjct: 393 ALCKRM 398



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 86/183 (46%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M + G+TP ++ +  ++    KT  V +   +  +M    + PD    NS+++
Sbjct: 321 AKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLID 380

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +    E+   +   M++     D+ +Y IL++   + G +E  + +FQ L AK    
Sbjct: 381 GLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHL 440

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +V  +T  +    +   +   L++  +M D GC PD  T  ++I A   +D+ ++   ++
Sbjct: 441 NVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKIL 500

Query: 238 RTM 240
           R M
Sbjct: 501 REM 503



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 72/154 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A ++FEEMK   + P + ++  L+    K  ++ +   +  +M + G++PD +    +
Sbjct: 354 DEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTIL 413

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L+   + G+ E  +E+   +    Y  ++  Y +LIN   + GF ++   L   +  K  
Sbjct: 414 LDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGC 473

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
            PD VT+   + A   K    +  +I  EMI  G
Sbjct: 474 MPDAVTFDIIIRALFEKDENDKAEKILREMIARG 507



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 92/210 (43%), Gaps = 7/210 (3%)

Query: 38  LLLQHTPNLFVF--IFSIYFSDAH-----AVFEEMKRLGITPTMKSHMLLLTAYSKTGNV 90
           LL++  P  F F  I S   ++ H     ++F++ +  GITP + +  +L+  +    ++
Sbjct: 49  LLMRPPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHI 108

Query: 91  AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150
                V   + K G  P+   +N+++      G+ +K       +    +  D  +Y  L
Sbjct: 109 TLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTL 168

Query: 151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
           IN   + G  + +  L + L    +KPDVV + + + +  + KL     +++ EMI  G 
Sbjct: 169 INGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGI 228

Query: 211 YPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            PD  T   LI        +++  +L+  M
Sbjct: 229 SPDVVTYTTLIHGFCIMGHLKEAFSLLNEM 258



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 82/194 (42%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F    + + A +VF  + + G  P   +   L+      G + K     +Q+   G + D
Sbjct: 102 FCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLD 161

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
                +++N   + G+ + +  +L  +E  S   D+  YN +IN   +   +     ++ 
Sbjct: 162 QVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYS 221

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +  K + PDVVT+T+ +  +      +    +  EM      P+  T  +LI A S E 
Sbjct: 222 EMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEG 281

Query: 229 QIEQVTTLVRTMHK 242
           ++++   L+  M K
Sbjct: 282 KMKEAKILLAVMMK 295



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 89/202 (44%), Gaps = 4/202 (1%)

Query: 57  DAHAVFEEMKRL---GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +  AV   +++L    + P +  +  ++ +  K   +     V ++M   G+ PD     
Sbjct: 177 ETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYT 236

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           ++++ +  +G  ++   +L  M+  +   ++ T+NILI+   + G +++ + L   +   
Sbjct: 237 TLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKA 296

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            +KPDV T+ S +  Y      +    +F  M   G  PD      +I+       +++ 
Sbjct: 297 CIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEA 356

Query: 234 TTLVRTM-HKDMKTALPIYFNL 254
            +L   M HK+M   +  Y +L
Sbjct: 357 MSLFEEMKHKNMIPDIVTYNSL 378


>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
 gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 29/225 (12%)

Query: 10  DLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLG 69
           DL  AQR      F+ LP+P+ F   N L+  +  +      SI     H V  +M++ G
Sbjct: 44  DLAYAQRL-----FDQLPHPNTF-FYNTLIRGYAKS------SIPSYSLHLV-NQMRQNG 90

Query: 70  ITPTMKSHMLLLTAYSKTGN--------VAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           + P   +   L+ A S+           V +C+ +   + K G     FV N++++LY  
Sbjct: 91  VDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAA 150

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G       V       +   D+ +++ L+  + R G +E+   +F  +P +    DVV+
Sbjct: 151 RGNPVVAWRVFDE----TVGVDVVSWSGLVLAHVRAGELERARWVFDQMPER----DVVS 202

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
           WT+ ++AYS+ K  R  LE++  M+D G  PD  T   +ISAC++
Sbjct: 203 WTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTN 247



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 87/186 (46%), Gaps = 8/186 (4%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF++M    +     S   +++AYS+     +   +   M   G++PD   + S+++
Sbjct: 188 ARWVFDQMPERDVV----SWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVIS 243

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
               LG  +    V + +++  +   +S  N LI++Y + G +++   +F S+  K L  
Sbjct: 244 ACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSL-- 301

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
             VTW S ++A +  +       +F  M + G  PDG T   +++A +    +++   L 
Sbjct: 302 --VTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLF 359

Query: 238 RTMHKD 243
            +M +D
Sbjct: 360 ESMQRD 365


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 1/204 (0%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F ++  + D   +  +M +  ITP + +   L+  + K G + + E +  +M + G+ PD
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPD 351

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           T    S+++ + +  Q +K   +L  M       +I T+NILIN Y +   I+    LF+
Sbjct: 352 TVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFR 411

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +  + +  D VT+ + +  +          E+F+EM+     PD  + K+L+       
Sbjct: 412 KMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNG 471

Query: 229 QIEQVTTLVRTMHKD-MKTALPIY 251
           + E+   +   + K  M+  + IY
Sbjct: 472 EPEKALEIFEKIEKSKMELDIGIY 495



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 92/203 (45%), Gaps = 5/203 (2%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+      +A  + +EM + GI+P   ++  L+  + K   + K   +++ M   G  P+
Sbjct: 327 FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
               N ++N Y +    +   E+   M      AD  TYN LI  +   G +E  + LFQ
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            + ++R++PD+V++   L          + LEIFE++  +    D G   ++I    +  
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506

Query: 229 QIEQVTTL-----VRTMHKDMKT 246
           +++    L     ++ +  D+KT
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKT 529



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             D   +F +M   G+     ++  L+  + + G +   + +  +M    ++PD      
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+     G+ EK  E+   +EK     DI  YNI+I+       ++    LF SLP K 
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +KPDV T+   +    +K        +F +M + G  P+G T  +LI A   E    +  
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSA 582

Query: 235 TLVRTMHK 242
            L+  + +
Sbjct: 583 KLIEEIKR 590



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 83/185 (44%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  + + M   G  P   ++  +L    K+G  A    ++ +M +  +K D    + +
Sbjct: 194 SDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSII 253

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G  +    +   ME   + ADI  Y  LI  +   G  +    L + +  +++
Sbjct: 254 IDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI 313

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDVV +++ +  + ++   R   E+ +EMI  G  PD  T   LI     E+Q+++   
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373

Query: 236 LVRTM 240
           ++  M
Sbjct: 374 MLDLM 378



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 95/214 (44%)

Query: 40  LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           + + P L V   S   + A  +  +M+   I      + +++    K G++     + N+
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M   G K D  +  +++  +   G+++   ++L  M K     D+  ++ LI+ + + G 
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
           + + E L + +  + + PD VT+TS +  + ++    +   + + M+  GC P+  T  +
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392

Query: 220 LISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           LI+     + I+    L R M      A  + +N
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYN 426



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 4/189 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A  + + M  +G  PT+ +   L+      G V+    +I++M ++G +P+      +
Sbjct: 159 SEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPV 218

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L +  + GQ     E+L  ME+     D   Y+I+I+   + G ++    LF  +  K  
Sbjct: 219 LKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 278

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           K D++ +T+ +  +     +    ++  +MI     PD      LI     E ++ +   
Sbjct: 279 KADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEE 338

Query: 236 LVRTMHKDM 244
           L    HK+M
Sbjct: 339 L----HKEM 343



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  +F +M+  G +P   ++ +L+ A+   G+  K   +I ++ + G   D   +  
Sbjct: 543 LSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRF 602

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY--GRGGFIEKMEGLFQSLPA 172
            L+   R             M K  +  D+ T+  L+  +       +     LF+++ A
Sbjct: 603 ALSTLAR-------------MLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKA 649

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
              KP+VVT+ + +       +  +   + ++M + GC P+  T    IS    +D    
Sbjct: 650 MGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGS 709

Query: 233 VTTLVRTMHKD 243
              L+R M  D
Sbjct: 710 AILLLRKMEND 720



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 78/186 (41%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F EM+  G    +  +  L+  +   G       ++  M K  + PD    ++
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + + G+  + EE+   M +   + D  TY  LI+ + +   ++K   +   + +K 
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P++ T+   +  Y +  L    LE+F +M   G   D  T   LI       ++E   
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442

Query: 235 TLVRTM 240
            L + M
Sbjct: 443 ELFQEM 448



 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 80/187 (42%), Gaps = 6/187 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F+EM    + P + S+ +LL      G   K   +  ++ KS ++ D  + N +++
Sbjct: 441 AKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIH 500

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                 + +   ++  ++       D+ TYNI+I    + G + + + LF+ +      P
Sbjct: 501 GMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSP 560

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS------EDQIE 231
           +  T+   + A+  +    +  ++ EE+   G   D  T +  +S  +       E  + 
Sbjct: 561 NGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVF 620

Query: 232 QVTTLVR 238
             TTL+R
Sbjct: 621 TFTTLLR 627



 Score = 38.5 bits (88), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/193 (19%), Positives = 72/193 (37%)

Query: 50  IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
           I  I   DA  +F+EM R    P +     L +  ++T        +  QM   G+  + 
Sbjct: 48  IVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNL 107

Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
           + ++ M+N   R  +       +  + K  Y  D  T++ LIN     G + +   L   
Sbjct: 108 YTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDR 167

Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
           +     KP ++T  + +            + + + M++ G  P+  T   ++       Q
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227

Query: 230 IEQVTTLVRTMHK 242
                 L+R M +
Sbjct: 228 TALAMELLRKMEE 240


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 92/182 (50%), Gaps = 3/182 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVIN 113
           F ++  +F+ MK++GI+P++ +   LL+   K G       + ++M ++ G+ PD++  N
Sbjct: 157 FQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFN 216

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL--P 171
           ++++ + +    ++   +   ME  S   D+ TYN +I+   R G ++    L   +   
Sbjct: 217 TLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKK 276

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           A  + P++V++T+ L  Y  K+     L +F EM+  G  P+  T   LI   S   + +
Sbjct: 277 ATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRYD 336

Query: 232 QV 233
           ++
Sbjct: 337 EI 338



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 39/218 (17%)

Query: 58  AHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           AH +F+EM+R  G+TP   +   L++ + K   V +   +  +M      PD    N+++
Sbjct: 195 AHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTII 254

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +   R G+ +    +L  M K + A   +I +Y  L+  Y     I++   +F  +  + 
Sbjct: 255 DGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRG 314

Query: 175 LKPDVVTWTSRLAAYSRKKLYRR------------------------------------C 198
           LKP+ VT+ + +   S    Y                                       
Sbjct: 315 LKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAHCDAGHLDAA 374

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           +++F+EM++   +PD  +  VLI      ++ ++  TL
Sbjct: 375 MKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETL 412



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/195 (18%), Positives = 82/195 (42%), Gaps = 10/195 (5%)

Query: 58  AHAVFEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           AH +   M  K   + P + S+  LL  Y     + +   V ++M   GLKP+    N++
Sbjct: 266 AHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGLKPNAVTYNTL 325

Query: 116 LNLYGRLGQFEKMEEVLTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +       ++++++  L   +   +++ D  T+NILI  +   G ++    +FQ +   +
Sbjct: 326 IKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMK 385

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-------GCYPDGGTAKVLISACSSE 227
           L PD  +++  +     +  + +   +F E+ +         C P      ++     + 
Sbjct: 386 LHPDSASYSVLIRTLCLRNEFDKAETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCAN 445

Query: 228 DQIEQVTTLVRTMHK 242
            + +Q   + R + K
Sbjct: 446 GKAKQAEKVFRQLMK 460



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 4/131 (3%)

Query: 115 MLNLYGRLGQFEKMEEVLTAMEK---GSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
           ML   GR          L ++EK   G        +N LI  YG  G  ++   LFQ++ 
Sbjct: 109 MLEFLGRARNLNAARNFLFSIEKRSNGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTMK 168

Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQI 230
              + P V+T+ S L+   ++       ++F+EM    G  PD  T   LIS       +
Sbjct: 169 KMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMV 228

Query: 231 EQVTTLVRTMH 241
           +Q  T+ + M 
Sbjct: 229 DQAFTIFKEME 239



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 4/198 (2%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFVI 112
           +D    F+ +   G +   +S  L+L    +  N+      +  + K     +K      
Sbjct: 85  ADGLRFFDWVYNKGFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEKRSNGCVKLQDRYF 144

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
           NS++  YG  G F++   +   M+K   +  + T+N L++I  + G       +F  +  
Sbjct: 145 NSLIRSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRR 204

Query: 173 KR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
              + PD  T+ + ++ + +  +  +   IF+EM    C PD  T   +I       +++
Sbjct: 205 TYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDGLCRAGKVK 264

Query: 232 QVTTLVRTMHKDMKTALP 249
               L+  M K      P
Sbjct: 265 IAHNLLNGMLKKATAVHP 282


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 90/174 (51%)

Query: 69  GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
           G+ P + ++ +L+      G   + E +  +M   G+ PDT   +SM++   +  + ++ 
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563

Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            ++  +M   S++ ++ T+N LIN Y + G ++    LF  +  + +  D + + + +  
Sbjct: 564 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 623

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           + +       L+IF+EMI +G YPD  T + +++   S++++E+   ++  + +
Sbjct: 624 FRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQR 677



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 92/204 (45%), Gaps = 3/204 (1%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F  S  +S A  + +EM    I+P + ++  L+ A+ K G   +   + ++M   G+ P+
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
           T   NSM++ + +  + +  E++   M     + D+ T+  LI+ Y     I+    L  
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 417

Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
            +P + L  + VT+ + +  +         L++ ++MI +G  PD  T   L+       
Sbjct: 418 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 477

Query: 229 QIEQVTTLVRTMHK---DMKTALP 249
           +++    + + M K   D+  + P
Sbjct: 478 KLKDALEMFKAMQKSKMDLDASHP 501



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 80/166 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SD+H +F EM+  GI P + ++  ++  +  +G  +  + ++ +M +  + P+    N++
Sbjct: 270 SDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNAL 329

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N + + G+F +  E+   M       +  TYN +I+ + +   ++  E +F  +  K  
Sbjct: 330 INAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGC 389

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            PDV T+T+ +  Y   K     +E+  EM   G   +  T   LI
Sbjct: 390 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 435



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 22/243 (9%)

Query: 43  TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +P++F F   I          D   +  EM R G+     ++  L+  +   G++     
Sbjct: 390 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALD 449

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS---------- 145
           +  QM  SG+ PD    N++L+     G+ +   E+  AM+K     D S          
Sbjct: 450 LSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDV 509

Query: 146 -TYNILI-NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
            TYNILI  +   G F+E  E L++ +P + + PD +T++S +    ++       ++F 
Sbjct: 510 LTYNILICGLINEGKFLEA-EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFV 568

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNL-YGEKGVA 261
            M      P+  T   LI+      +++    L   M  + +     IY  L YG + V 
Sbjct: 569 SMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVG 628

Query: 262 RSN 264
             N
Sbjct: 629 NIN 631



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/176 (19%), Positives = 84/176 (47%), Gaps = 1/176 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSM 115
           +A A+ + M   G+ P   ++   +    K G+      ++ +M + S +KP+  + +++
Sbjct: 200 EAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAI 259

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G+      +   M+      +I TYN +I  +   G     + L Q +  +++
Sbjct: 260 IDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKI 319

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
            P+VVT+ + + A+ ++  +    E+++EM+  G  P+  T   +I     +D+++
Sbjct: 320 SPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLD 375



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 2/185 (1%)

Query: 70  ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
           I P +  +  ++    K G  +    +  +M   G+ P+    N M+  +   G++   +
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 130 EVLTAMEKGSYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            +L  M +   + ++ TYN LIN + + G F E  E L+  +  + + P+ +T+ S +  
Sbjct: 309 RLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAE-LYDEMLPRGIIPNTITYNSMIDG 367

Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248
           + ++       ++F  M   GC PD  T   LI       +I+    L+  M +    A 
Sbjct: 368 FCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVAN 427

Query: 249 PIYFN 253
            + +N
Sbjct: 428 TVTYN 432



 Score = 41.6 bits (96), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            D   +F EM R GI      ++ L+  + K GN+     +  +M  SG+ PDT  I +M
Sbjct: 596 DDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 655

Query: 116 LNLYGRLGQFEKMEEVLTAMEK 137
           L  +    + E+   +L  +++
Sbjct: 656 LTGFWSKEELERAVAMLEDLQR 677



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 4/145 (2%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           + + M +S   P     N ++    R+ + + +  +   ME+     DI ++ ILI  + 
Sbjct: 68  LFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFC 127

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
               +      F  L    L PDVVT+T+ L            L++F ++    C PD  
Sbjct: 128 SCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVL 183

Query: 216 TAKVLISACSSEDQIEQVTTLVRTM 240
           T   L++    E ++ +   L+  M
Sbjct: 184 TFTTLMNGLCREGRVVEAVALLDRM 208


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 34  LINFLLLQ-HTPNLFVF---IFSI----YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           L+N++  Q  +P++F +   I S+    Y SDA  +F+EM   G+TP +  + +L+  + 
Sbjct: 171 LLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFF 230

Query: 86  KTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144
           K G++     +  ++ K   + P+    N M+N   + G+F++  E+   M+K     D+
Sbjct: 231 KKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDL 290

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
            TY+ LI+     G ++    +++ +    + PDVV + + L  Y R      CLE+++ 
Sbjct: 291 YTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKV 350

Query: 205 MIDAGC 210
           M   GC
Sbjct: 351 MEKEGC 356



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 2/190 (1%)

Query: 58  AHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           A  +F+ M  + G  P ++S+  LL A  ++    + E         GL P+    N ++
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 156

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +  R  QF+K +E+L  M +  ++ D+ +Y  LIN   + G++     LF  +P + + 
Sbjct: 157 KISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVT 216

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTT 235
           PDV  +   +  + +K       EI+E ++     YP+  +  V+I+      + ++   
Sbjct: 217 PDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFE 276

Query: 236 LVRTMHKDMK 245
           +   M K+ +
Sbjct: 277 IWHRMKKNER 286



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 81/189 (42%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y + A ++ EE +         ++  ++    + G + +  GV++QM K G KP+  V N
Sbjct: 409 YLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCN 468

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N + R  + E        M        + TYN LIN   +     +   L + +  K
Sbjct: 469 AVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHK 528

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             KP+++T++  +    + K     L ++ + ++ G  PD     ++I    S  ++E  
Sbjct: 529 GWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDA 588

Query: 234 TTLVRTMHK 242
             L   M +
Sbjct: 589 LQLYSEMKQ 597



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 49  FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
           F+ +    DA   F  M   G  PT+ ++  L+   SK    ++   ++ +M   G KP+
Sbjct: 474 FVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPN 533

Query: 109 TFVINSMLNLYGRLGQFEKMEEVLT----AMEKGSYAADISTYNILINIYGRGGFIEKME 164
               + ++N    L Q +K++  L     A+EKG +  D+  +NI+I+     G +E   
Sbjct: 534 MITYSLLMN---GLCQGKKLDMALNLWCQALEKG-FKPDVKMHNIIIHGLCSSGKVEDAL 589

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            L+  +  ++  P++VT  + +  + + + + R  +I++ ++  G  PD
Sbjct: 590 QLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPD 638



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 35/229 (15%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----------- 106
           A  V++EM   G++P +  +  +L  Y + G + +C  +   M K G +           
Sbjct: 309 ATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRG 368

Query: 107 -----------------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
                                   D+     +++   + G   K   +L   E G    D
Sbjct: 369 LFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLD 428

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
              Y+ +IN   R G ++++ G+   +     KP+     + +  + R       L  F 
Sbjct: 429 TFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG 488

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIY 251
            M+  GC+P   T   LI+  S  ++  +   LV+ M HK  K  +  Y
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITY 537



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 92/209 (44%), Gaps = 8/209 (3%)

Query: 43  TPNLFVFIFSIYFSDAHAVFEEMKRL-------GITPTMKSHMLLLTAYSKTGNVAKCEG 95
           +PNL  +   I  S     F++ K L       G +P + S+  L+ + +K G ++    
Sbjct: 146 SPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALK 205

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIY 154
           + ++M + G+ PD    N +++ + + G      E+   + KG S   +I +YN++IN  
Sbjct: 206 LFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGL 265

Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
            + G  ++   ++  +       D+ T+++ +              +++EM + G  PD 
Sbjct: 266 CKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDV 325

Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKD 243
                +++      +IE+   L + M K+
Sbjct: 326 VVYNTMLNGYLRAGRIEECLELWKVMEKE 354



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/209 (18%), Positives = 88/209 (42%), Gaps = 1/209 (0%)

Query: 46  LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
           L   I S  + +A + F   + +G++P ++++ +L+    +     K + ++N M + G 
Sbjct: 121 LNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGF 180

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKME 164
            PD F   +++N   + G      ++   M +     D++ YNILI+  + +G  +   E
Sbjct: 181 SPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASE 240

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
              + L    + P++ ++   +    +   +    EI+  M       D  T   LI   
Sbjct: 241 IWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGL 300

Query: 225 SSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
                ++  T + + M ++  +   + +N
Sbjct: 301 CGSGNLDGATRVYKEMAENGVSPDVVVYN 329



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 79/181 (43%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A +++E +          ++ +L+    K G + K   ++ +        DTF  +SM
Sbjct: 376 DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 435

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +N   R G+ +++  VL  M K     +    N +IN + R   +E     F ++ +K  
Sbjct: 436 INGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGC 495

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P VVT+ + +   S+ + +     + +EM+  G  P+  T  +L++      +++    
Sbjct: 496 FPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALN 555

Query: 236 L 236
           L
Sbjct: 556 L 556



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/169 (19%), Positives = 74/169 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           FS+A+A+ +EM   G  P M ++ LL+    +   +     +  Q  + G KPD  + N 
Sbjct: 515 FSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNI 574

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++     G+ E   ++ + M++     ++ T+N L+  + +    E+   ++  +    
Sbjct: 575 IIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYG 634

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
            +PD++++   L            +    + +D G  P   T  +L+ A
Sbjct: 635 PQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRA 683


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 7/217 (3%)

Query: 33  MLINFLLLQHTPNLFVFIFSIY-FSD------AHAVFEEMKRLGITPTMKSHMLLLTAYS 85
           ML N L  + TP L  +   I  + D      A  V E MK  G  P   S+  L++ + 
Sbjct: 457 MLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFC 516

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           K   +    G+ N+M   GL P+     ++++ Y +  + +    +L  M++     ++ 
Sbjct: 517 KISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQ 576

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           TYN+LI+   +       E L + +  +++ PDVVT+++ +            LE+F +M
Sbjct: 577 TYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKM 636

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
           +  GC P+  T   LI A   E ++E+   +   + K
Sbjct: 637 VKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKK 673



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E MKR G  P ++++ +L+   +K  N +  E +   M +  + PD    ++++N
Sbjct: 559 AARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVIN 618

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G      E+   M K     ++ TY+ LI   G+ G +E+ E +F  L  + L P
Sbjct: 619 GLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIP 678

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
           D VT+   +          R  +   EMI+AGC P   T  VLI    +E
Sbjct: 679 DEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNE 728



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           + ++ R G+ P +  +  ++ A  K GNV   E +IN++ KSG+KPDTF   SM+  Y R
Sbjct: 216 YHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCR 275

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
               +   E+   M++     + +TY+ LIN     G + +       +    + P V T
Sbjct: 276 NRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHT 335

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +T+ + A           +IF +M   GC P+  T   LIS 
Sbjct: 336 FTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG 377



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 82/185 (44%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F  M R G+ P   ++  L+    +   +     V N M K G  P+T   N ++ 
Sbjct: 384 AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIR 443

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            Y  +G  EK   +LT M KG     + TYNI+I  Y   G  +    + + + A   +P
Sbjct: 444 GYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQP 503

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  ++T  ++ + +         +F EM+D G  P+  T   LIS    +++++    ++
Sbjct: 504 DEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARML 563

Query: 238 RTMHK 242
             M +
Sbjct: 564 ERMKR 568



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 5/201 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
              A  +F  M   G  P   ++  L+     +G V +    I++M + G+ P      +
Sbjct: 279 LDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTA 338

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME-GLFQSLPAK 173
            +     +G+ E   ++   M+K     ++ TY  LI+    G  + +M  GLF  +   
Sbjct: 339 PIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLIS----GQRVSRMAIGLFHRMSRD 394

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            + P+ VT+ + +            L +F  M   GC P+  +   LI    +    E+ 
Sbjct: 395 GVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKA 454

Query: 234 TTLVRTMHKDMKTALPIYFNL 254
            +++  M K   T   + +N+
Sbjct: 455 MSMLTNMLKGRPTPTLVTYNI 475



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 72/185 (38%), Gaps = 2/185 (1%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + E   R       + HM+   + S    + +    ++   + G K   F   ++L 
Sbjct: 144 AMRLLESRDRPAAVGRARIHMI--KSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLI 201

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +L     + +    + +     ++  YN +IN   + G +   E +   +    +KP
Sbjct: 202 QLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKP 261

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+TS +  Y R +      EIF  M + GC P+  T   LI+   +  ++ +    +
Sbjct: 262 DTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFI 321

Query: 238 RTMHK 242
             M +
Sbjct: 322 SEMTR 326



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 1/172 (0%)

Query: 98  NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
           +Q+ + GL+P+  + NS++N   + G     E ++  + K     D  TY  +I  Y R 
Sbjct: 217 HQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRN 276

Query: 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTA 217
             ++    +F  +  +  +P+  T+++ +            L+   EM   G  P   T 
Sbjct: 277 RDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTF 336

Query: 218 KVLISACSSEDQIEQVTTLVRTMHKD-MKTALPIYFNLYGEKGVARSNLGQY 268
              I A     +IE    +   M K   K  +  Y +L   + V+R  +G +
Sbjct: 337 TAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLF 388



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 79/217 (36%), Gaps = 32/217 (14%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           ++A     EM R G+ PT+ +    + A    G +     +   M K G KP+ +   S+
Sbjct: 315 NEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSL 374

Query: 116 LN----------LYGRLGQ-----------------FEKME-----EVLTAMEKGSYAAD 143
           ++          L+ R+ +                  E ME      V   M K     +
Sbjct: 375 ISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPN 434

Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
            S+YN LI  Y   G  EK   +  ++   R  P +VT+   +  Y         + + E
Sbjct: 435 TSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLE 494

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
            M   GC PD  +   LIS      ++E  + +   M
Sbjct: 495 LMKANGCQPDEWSYTELISGFCKISKMELASGMFNEM 531


>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           turbinata]
          Length = 441

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%)

Query: 39  LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
           L+ +   + VF  +  F +A ++  EMK  G+ P   S+  LLT Y +     +   V +
Sbjct: 86  LVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFS 145

Query: 99  QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
           +M +     D    N M+++YG+LG  ++ +++   M K     ++ +YN L+ +YG   
Sbjct: 146 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 205

Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
              +   LF+ +  K ++ +VVT+ S +  Y +   + +   + +EM   G  P+  T  
Sbjct: 206 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGVEPNSITYS 265

Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
            +IS      ++++   L + + 
Sbjct: 266 TIISIWGKVGKLDRAAMLFQKLR 288



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 77/165 (46%)

Query: 59  HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
           H +F+EM++  ++P   ++  L+T + K G        + +M +  +  D  + ++++ L
Sbjct: 1   HGLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIEL 60

Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
             +L  + K   + + ++   +  D+  YN +IN++G+     +   L   +    + P+
Sbjct: 61  SRKLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPN 120

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             ++++ L  Y   K +   L +F EM +  C  D  T  ++I  
Sbjct: 121 TTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDV 165



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 80/151 (52%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +S A ++F  +K  G  P + ++  ++  + K     +   +I++M  +G+ P+T   ++
Sbjct: 67  YSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 126

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +Y    +F +   V + M +     D++T NI+I++YG+ G  ++ + LF  +    
Sbjct: 127 LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 186

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           ++P+VV++ + L  Y   +L+   + +F  M
Sbjct: 187 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 217



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F  M+++GI P + S+  LL  Y       +   +   M +  ++ +    NSM+
Sbjct: 174 EADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMM 233

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            +YG+  + EK   ++  M+      +  TY+ +I+I+G+ G +++   LFQ L +  ++
Sbjct: 234 MIYGKTLEHEKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVE 293

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D + + + + AY R  L      +  E+      PD       I   +   +IE+ T +
Sbjct: 294 IDQILFQTMIVAYERAGLVAHAKRLLHEL----KRPDNIPRDTAIHILAGAGRIEEATYV 349

Query: 237 VR 238
            R
Sbjct: 350 FR 351



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 86/169 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A +VF EM+ +     + +  +++  Y + G   + + +   M K G++P+    N+
Sbjct: 137 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 196

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L +YG    F +   +   M++ +   ++ TYN ++ IYG+    EK   L Q + ++ 
Sbjct: 197 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG 256

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           ++P+ +T+++ ++ + +     R   +F+++  +G   D    + +I A
Sbjct: 257 VEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 305



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 88/186 (47%), Gaps = 6/186 (3%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A+ + +EM+  G+ P   ++  +++ + K G + +   +  ++  SG++ D  +  +M+ 
Sbjct: 245 ANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 304

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF-QSLPAKRLK 176
            Y R G     + +L  +++     D    +  I+I    G IE+   +F Q++ A  +K
Sbjct: 305 AYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 360

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            D+  +   +   S+ K Y   +E+F++M   G +PD     ++++A     + ++   +
Sbjct: 361 -DITVFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDV 419

Query: 237 VRTMHK 242
              M +
Sbjct: 420 YMEMQE 425


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 87/177 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  ++EEMK   I+    S+  ++  Y+K G   +  G   +M   G+K D    N+
Sbjct: 370 LEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNA 429

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ YGR G ++++  +   M+  +   +  TY+ +I++Y +GG  ++   +++     +
Sbjct: 430 LLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQ 489

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           L+ DVV +TS + +  +  L    + +   MI+ G  P+  T   +I A      +E
Sbjct: 490 LEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLE 546



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 84/155 (54%), Gaps = 5/155 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI---NQMHKSGLKPDTF 110
           +FSDA  +F  M+  G+ P + S+  L+ A +K G V   + V+   ++M   G+ PD  
Sbjct: 228 HFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAK-GEV-DFDVVVKFFDEMLAEGIVPDRL 285

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
             NS+L++    G +E  +++L+ M++     D  TYN  ++   +GG I+    + + +
Sbjct: 286 TYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEM 345

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            ++R+ P VVT+++ +   ++  L    L ++EEM
Sbjct: 346 SSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEM 380



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 78/151 (51%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V EEM    + PT+ ++  ++   +K   +     +  +M    +  D    N+M+ 
Sbjct: 338 ARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVG 397

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           +Y +LG+F++       ME      D+ TYN L++ YGR G  +++  LF+ + A  + P
Sbjct: 398 IYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYP 457

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
           + +T+++ +  Y++  +++  ++++++   A
Sbjct: 458 NTLTYSTMIDVYTKGGMFQEAMDVYKDFKKA 488



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 4/193 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +  A  +  EM + GI     ++   L    K G +     V+ +M    + P     ++
Sbjct: 300 WETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYST 359

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M++   +    E    +   M+  S + D  +YN ++ IY + G  ++  G  + + +  
Sbjct: 360 MIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCG 419

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           +K DVVT+ + L+ Y R  +Y     +FEEM     YP+  T   +I   +     ++  
Sbjct: 420 MKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAM 479

Query: 235 TLVRTMHKDMKTA 247
            +    +KD K A
Sbjct: 480 DV----YKDFKKA 488



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 72/146 (49%), Gaps = 1/146 (0%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           ++++M+   GRLG+      +  +     +   + +++ +I+ YGR G       LF+S+
Sbjct: 180 LVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSM 239

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
            +  + P+++++ S + A ++ ++ +   ++ F+EM+  G  PD  T   L+S C+S+  
Sbjct: 240 RSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGM 299

Query: 230 IEQVTTLVRTMHKDMKTALPIYFNLY 255
            E    L+  M +         +N Y
Sbjct: 300 WETAQKLLSEMDQKGIVRDAFTYNTY 325


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 21/204 (10%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  VF  M R G+TP + S+ +++    KT  V +   ++ +MH   + P+T   +S+++
Sbjct: 243 ATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLID 302

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G+     +++  M      AD+ TYN L++   +   ++K   L   +  + ++P
Sbjct: 303 GLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQP 362

Query: 178 DVVTWT---------SRL------------AAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           D+ T+T          RL              Y    L+ + L +  +M D GC P+  T
Sbjct: 363 DIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVT 422

Query: 217 AKVLISACSSEDQIEQVTTLVRTM 240
            ++LI A    D  ++   L+R M
Sbjct: 423 FEILIRALFENDMNDKAVELLREM 446



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 17/230 (7%)

Query: 35  INFLLLQHTPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
           I+ LL+Q  PN+ ++   IY         DA  ++ +M    I+P + ++  L+      
Sbjct: 110 IDGLLVQ--PNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIV 167

Query: 88  GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
           G + +  G+ NQM    +KPD +  N +++   + G+ +K   VL  M K S   D+ TY
Sbjct: 168 GRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITY 227

Query: 148 NILINIYGRGGFIEKMEG----LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
           N L++    G F+ K E     +F ++  + + PDV +++  +    + K+    + + +
Sbjct: 228 NSLMD----GYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLK 283

Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
           EM      P+  T   LI       +I     LV  MH   + A  I +N
Sbjct: 284 EMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYN 333



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 1/197 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A  +F +M    I P + +  +L+    K G + K   V+  M K  + PD    NS
Sbjct: 170 LKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNS 229

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ Y  + Q  K   V   M +     D+ +Y+++IN   +   +++   L + + +K 
Sbjct: 230 LMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKS 289

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P+ VT++S +    +        ++  EM + G   D  T   L+ A     Q+++  
Sbjct: 290 MAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAI 349

Query: 235 TLVRTMHKDMKTALPIY 251
           TL+ T  KD      IY
Sbjct: 350 TLL-TKIKDQGIQPDIY 365



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 4/186 (2%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V   +  L + P +  +  ++ +  K   V     + +QM    + PD    N+++ 
Sbjct: 103 AMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLM- 161

Query: 118 LYGRL--GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
            YG L  G+ ++   +   M   +   DI T+NIL++   + G ++K   +   +  + +
Sbjct: 162 -YGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSV 220

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PDV+T+ S +  Y   K   +   +F  M   G  PD  +  V+I+       +++   
Sbjct: 221 DPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVN 280

Query: 236 LVRTMH 241
           L++ MH
Sbjct: 281 LLKEMH 286



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 68/166 (40%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V   M +  + P + ++  L+  Y       K   V N M + G+ PD    + M+N
Sbjct: 208 ARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMIN 267

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              +    ++   +L  M   S A +  TY+ LI+   + G I     L   +  +    
Sbjct: 268 GLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPA 327

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           DV+T+ S L A  +     + + +  ++ D G  PD  T  +L+  
Sbjct: 328 DVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDG 373



 Score = 41.6 bits (96), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF---EK 127
           TPT+     +  +  K  +      + +QM   G++ D   +N ++N +  LGQ    +K
Sbjct: 5   TPTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDK 64

Query: 128 MEEVL----TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           ++E L      + KG     +S Y  LI+   + G       + +++    ++P+VV ++
Sbjct: 65  VKETLHFHDDVIAKGFQLNQVS-YGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYS 123

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
           + + +  + KL     +++ +M+     PD  T   L+  C    ++++   L   M
Sbjct: 124 TIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQM 180


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            +A  + +EM   G+ P M ++  ++    K G V +   +I  +   G +PD    N +
Sbjct: 241 DEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNIL 300

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           L      G++E+ E+++T M       ++ TY+ILI    R G IE+   L + +  K L
Sbjct: 301 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 360

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
            PD  ++   +AA+ R+      +E  E MI  GC PD
Sbjct: 361 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPD 398



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 88/186 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V +++      PT+ ++ +L+ A    G V +   ++++M   GLKPD F  N+++ 
Sbjct: 208 ALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIR 267

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              + G  ++  E++  +E      D+ +YNIL+      G  E+ E L   + +++  P
Sbjct: 268 GMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDP 327

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           +VVT++  +    R       + + + M + G  PD  +   LI+A   E +++     +
Sbjct: 328 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 387

Query: 238 RTMHKD 243
            TM  D
Sbjct: 388 ETMISD 393



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 2/188 (1%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y    H + E M R G  P +     L+  +    NV K   V+  + K G +PD F  N
Sbjct: 101 YIESLH-LLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAYN 158

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           +++N + ++ + +    VL  M    ++ D  TYNI+I      G ++    +   L + 
Sbjct: 159 ALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSD 218

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
             +P V+T+T  + A   +      L++ +EM+  G  PD  T   +I     E  +++ 
Sbjct: 219 NCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRA 278

Query: 234 TTLVRTMH 241
             ++R + 
Sbjct: 279 FEMIRNLE 286



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 82/183 (44%), Gaps = 1/183 (0%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V E +++ G  P + ++  L+  + K   +     V+++M      PDT   N M+ 
Sbjct: 139 AVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIG 197

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G+ +   +VL  +   +    + TY ILI      G +++   L   + ++ LKP
Sbjct: 198 SLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKP 257

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D+ T+ + +    ++ +  R  E+   +   GC PD  +  +L+ A  ++ + E+   L+
Sbjct: 258 DMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLM 317

Query: 238 RTM 240
             M
Sbjct: 318 TKM 320



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +F ++  +G +P   S+  + +A   +G+  +   +I +M  +G+ PD    NSM++
Sbjct: 418 ALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMIS 477

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
              R G  +K  E+L  M    +   + TYNI++  + +   IE    +  S+     +P
Sbjct: 478 CLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRP 537

Query: 178 DVVTWT 183
           +  T+T
Sbjct: 538 NETTYT 543



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 72/170 (42%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + ++ +L+T   + G + +   ++  M + GL PD +  + ++  + R G+ +   E 
Sbjct: 327 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 386

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           L  M       DI  YN ++    + G  ++   +F  L      P+  ++ +  +A   
Sbjct: 387 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 446

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
                R L +  EM+  G  PD  T   +IS    E  +++   L+  M 
Sbjct: 447 SGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMR 496



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 82/188 (43%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA  V + M+    +P   ++ +++ +    G +     V++Q+     +P       
Sbjct: 170 IDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTI 229

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++      G  ++  ++L  M       D+ TYN +I    + G +++   + ++L  K 
Sbjct: 230 LIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKG 289

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            +PDV+++   L A   +  +    ++  +M    C P+  T  +LI+    + +IE+  
Sbjct: 290 CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAM 349

Query: 235 TLVRTMHK 242
            L++ M +
Sbjct: 350 NLLKLMKE 357



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 66/162 (40%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
            E M   G  P + ++  +L    K G   +   +  ++ + G  P++   N+M +    
Sbjct: 387 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 446

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G   +   ++  M       D  TYN +I+   R G ++K   L   + +    P VVT
Sbjct: 447 SGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVT 506

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           +   L  + +       +++ + M+  GC P+  T  VLI  
Sbjct: 507 YNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEG 548



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 6/183 (3%)

Query: 86  KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
           ++GN  +   ++  M + G  PD  +   ++  +  L    K   V+  +EK     D+ 
Sbjct: 97  RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDVF 155

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
            YN LIN + +   I+    +   + +K   PD VT+   + +   +      L++ +++
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-----RTMHKDMKTALPIYFNLYGEKGV 260
           +   C P   T  +LI A   E  +++   L+     R +  DM T   I   +  E  V
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMV 275

Query: 261 ARS 263
            R+
Sbjct: 276 DRA 278



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 87/186 (46%), Gaps = 6/186 (3%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  + + MK  G+TP   S+  L+ A+ + G +      +  M   G  PD    N++L
Sbjct: 347 EAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVL 406

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAKRL 175
               + G+ ++  E+   + +   + + S+YN + + ++  G  I  +  + + + +  +
Sbjct: 407 ATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE-MVSNGI 465

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSS---EDQIE 231
            PD +T+ S ++   R+ +  +  E+  +M     +P   T   VL+  C +   ED I+
Sbjct: 466 DPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAID 525

Query: 232 QVTTLV 237
            + ++V
Sbjct: 526 VLDSMV 531


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 89/179 (49%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A    E M   G+TP + ++  L+ A  K GNVAK   ++++M +SGLK DTF +N+
Sbjct: 401 LEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNT 460

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L    +  ++E+ EE+L A  +  +  D  +Y  ++  Y +    E    L+  +  ++
Sbjct: 461 LLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRK 520

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
           L P + T+ + +   S        ++   E+++ G  PD  T  ++I A   E  +E+ 
Sbjct: 521 LTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKA 579



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 11/184 (5%)

Query: 50  IFSIYFSD-----AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
           + + YF +     A  +++EM +  +TP++ ++  L+   S  G + +    +N++ + G
Sbjct: 496 VMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMG 555

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN---IYGRGGFIE 161
           L PD    N +++ Y + G  EK  +    M + S+  D+ T N L+N   +YGR   +E
Sbjct: 556 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGR---LE 612

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           K   LF+S   K  K DV+T+ + + A  +       L  F +M   G  PD  T  VL+
Sbjct: 613 KAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLL 672

Query: 222 SACS 225
           SA S
Sbjct: 673 SALS 676



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 112/242 (46%), Gaps = 12/242 (4%)

Query: 36  NFLLLQHTPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG 88
           + + L+  PN + F   ++        +DA +   +M+  G++P   ++  LL A+ + G
Sbjct: 199 SLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKG 258

Query: 89  NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148
            + +   ++ +M K G+ P     N++++ Y RLG  ++  +V+ AM    +  D+ TYN
Sbjct: 259 MLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYN 318

Query: 149 ILINIYGRGGFIE---KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
           +L     + G ++   K++   + L    + PDVVT+ + + A  + +     L + EEM
Sbjct: 319 VLAAGLCQAGKVDEAFKLKDEMEQLGI--VSPDVVTYNTLVDACFKCQRSSDALNLLEEM 376

Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNL 265
            + G      T  +++     E Q+E+    +  M ++  T   I +N   +      N+
Sbjct: 377 REKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNV 436

Query: 266 GQ 267
            +
Sbjct: 437 AK 438



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 80/171 (46%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA  + EEM+  G+  ++ +H +++    + G + +  G +  M + GL PD    N++
Sbjct: 367 SDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTL 426

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   + G   K   ++  M +     D  T N L+    +    E+ E L ++ P +  
Sbjct: 427 IDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGF 486

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
            PD V++ + +AAY ++      L +++EMI     P   T   LI   S+
Sbjct: 487 VPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLST 537



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 2/190 (1%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
            F  +  L + P   +  LL+  +   G +A     +++M   GL PD    N++LN + 
Sbjct: 196 AFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHC 255

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           R G   +   +L  M+K       +TYN L++ Y R G+I++   + +++ A   +PD+ 
Sbjct: 256 RKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLW 315

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSEDQIEQVTTLVRT 239
           T+    A   +        ++ +EM   G   PD  T   L+ AC    +      L+  
Sbjct: 316 TYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEE 375

Query: 240 M-HKDMKTAL 248
           M  K +K++L
Sbjct: 376 MREKGVKSSL 385



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 1/159 (0%)

Query: 56  SDAHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            +A  + +EM++LGI +P + ++  L+ A  K    +    ++ +M + G+K      N 
Sbjct: 331 DEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNI 390

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++    R GQ E+    L  M +     D+ TYN LI+   + G + K   L   +    
Sbjct: 391 IVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSG 450

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           LK D  T  + L    ++K Y    E+       G  PD
Sbjct: 451 LKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPD 489


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 81/170 (47%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  +F++M+  G++    ++  L+    K+  V +   +++QM   GLKPD F  NSML
Sbjct: 367 EAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSML 426

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + R G  +K  +++  M       DI TY  LI    + G +E    L +S+  K + 
Sbjct: 427 TYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMV 486

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
                +   + A  ++K  +  + +F EM + G  PD  T K++    S+
Sbjct: 487 LTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSN 536



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 88/184 (47%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  ++ EMK  G  P   ++ +L+ +    G + +  G++ +M  SG   +    N++++
Sbjct: 298 AIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLID 357

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
            + +  + E+ EE+   ME    + +  TYN LI+   +   +++   L   +  + LKP
Sbjct: 358 GFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKP 417

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           D  T+ S L  + R+   ++  +I + M   GC PD  T   LI       ++E  + L+
Sbjct: 418 DKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLL 477

Query: 238 RTMH 241
           R++ 
Sbjct: 478 RSIQ 481



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 3/204 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVIN 113
           F+    + +EMK L         ++ + +Y+K     +   ++  M  + GL  DT + N
Sbjct: 103 FNSMKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYN 162

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            +LN+     + + +E V + M       D+ST+NILI    +   I     + + + + 
Sbjct: 163 FLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSY 222

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
            L PD  T+T+ +  +  +        + E+M+DAGC     T  VL+     E +IE+ 
Sbjct: 223 GLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEA 282

Query: 234 TTLVRTMHKDMKTALPIYFNLYGE 257
            + +  M  + K  + I   LY E
Sbjct: 283 LSFIDEMSNEGKHTMAI--ELYNE 304



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 81/199 (40%), Gaps = 16/199 (8%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V EEM   G+ P  K+   L+  + + GN+     V  QM  +G       +N +++
Sbjct: 212 AILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVH 271

Query: 118 LYGRLGQFEKME----------------EVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
            + + G+ E+                  E+   M+      D  TYN+LI+     G ++
Sbjct: 272 GFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQ 331

Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
           +  GL + +       +V+T+ + +  + + K      EIF++M   G   +  T   LI
Sbjct: 332 EALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLI 391

Query: 222 SACSSEDQIEQVTTLVRTM 240
                  ++++   L+  M
Sbjct: 392 DGLCKSRRVQEAAQLMDQM 410


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 84/167 (50%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
            S+A  VF+EMK  GI P + ++ +++ A  + G +++   V   M  SG  P+    N+
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN 330

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++ ++ + G+ EK+ +V   M+K     D  TYN LI  + R   +E    +  ++  K+
Sbjct: 331 LMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKK 390

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            + +  T+ +      +K+       ++ +M++A C P+  T  +L+
Sbjct: 391 CEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILM 437



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 87/187 (46%), Gaps = 1/187 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A   F  M+  G  P   +  ++++  S+    ++ +   + + K   +PD  V  ++
Sbjct: 203 SEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNL 261

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           +  + R G+  + E+V   M+      ++ TY+I+I+   R G I +   +F  +     
Sbjct: 262 VRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGC 321

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            P+ +T+ + +  + +     + L+++ +M   GC PD  T   LI A   ++ +E    
Sbjct: 322 APNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVK 381

Query: 236 LVRTMHK 242
           ++ TM K
Sbjct: 382 VLNTMIK 388



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 7/186 (3%)

Query: 44  PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           PN++ +   I         S AH VF +M   G  P   +   L+  + K G   K   V
Sbjct: 288 PNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQV 347

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
            NQM K G +PDT   N ++  + R    E   +VL  M K     + ST+N +     +
Sbjct: 348 YNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEK 407

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
              +     ++  +   + +P+ VT+   +  +   K     L++ +EM D    P+  T
Sbjct: 408 KRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNT 467

Query: 217 AKVLIS 222
            ++L++
Sbjct: 468 YRLLVT 473



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A + F+ +K     P +  +  L+  + + G +++ E V  +M  +G++P+ +  + +
Sbjct: 238 SEAQSFFDSLKD-RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIV 296

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           ++   R GQ  +  +V   M     A +  T+N L+ ++ + G  EK+  ++  +     
Sbjct: 297 IDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGC 356

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           +PD +T+   + A+ R +     +++   MI   C  +  T
Sbjct: 357 EPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNAST 397



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 86/188 (45%), Gaps = 1/188 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  + + MK   +  ++++  +L+  Y + G  ++     N+M   G  PD    + 
Sbjct: 167 FDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSI 226

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++   R  +  + +    ++ K  +  D+  Y  L+  + R G I + E +F+ +    
Sbjct: 227 VISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAG 285

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           ++P+V T++  + A  R     R  ++F +M+D+GC P+  T   L+       + E+V 
Sbjct: 286 IEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVL 345

Query: 235 TLVRTMHK 242
            +   M K
Sbjct: 346 QVYNQMKK 353



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/191 (18%), Positives = 84/191 (43%), Gaps = 1/191 (0%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           V+ +MK+LG  P   ++  L+ A+ +  N+     V+N M K   + +    N++     
Sbjct: 347 VYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIE 406

Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
           +         + + M +     +  TYNIL+ ++      + +  + + +  K ++P+V 
Sbjct: 407 KKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVN 466

Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSEDQIEQVTTLVRT 239
           T+   +  +     +    ++F+EM++  C  P     +++++      Q+++   LV  
Sbjct: 467 TYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEK 526

Query: 240 MHKDMKTALPI 250
           M +    A P+
Sbjct: 527 MIQKGLVARPL 537



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 36/155 (23%)

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-------IEKME- 164
           N M++L G++ QF+    ++  M+  +    I T+ ILI  Y R G          +ME 
Sbjct: 155 NEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMED 214

Query: 165 ---------------------------GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
                                        F SL   R +PDV+ +T+ +  + R      
Sbjct: 215 YGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEISE 273

Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
             ++F+EM  AG  P+  T  ++I A     QI +
Sbjct: 274 AEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISR 308



 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/108 (21%), Positives = 48/108 (44%)

Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
           YN +I++ G+    +    L   + ++ ++  + T+T  +  Y R  L    +  F  M 
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
           D GC PD     ++IS  S + +  +  +   ++    +  + +Y NL
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNL 261


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 35/218 (16%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  +   MK  G+ P  K++  L+  +SK GN  K   +++ M K G   + F  N+ ++
Sbjct: 391 AEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFID 450

Query: 118 LYGRLGQFEKMEEVL-----------------------------------TAMEKGSYAA 142
              + G+F +  ++L                                   + M K     
Sbjct: 451 SLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQP 510

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
           D+ TYN LI  + R   +E+ E LF       L P   T+TS +  Y R +     L+ F
Sbjct: 511 DMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFF 570

Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
             M D GC PD  T   LIS    E ++++   L   M
Sbjct: 571 NRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAM 608



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + ++  ++  Y K   + + E ++++M + GL P+T     +++ + + G FEK  E+
Sbjct: 370 PNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYEL 429

Query: 132 LTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           +  M K  ++A+I TYN  I+ +  +G F+E  + L +      L+ D VT+T  ++   
Sbjct: 430 MDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLG-LQADTVTYTILISELC 488

Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           R+   R  L  F +M  AG  PD  T   LI+A S + ++E+   L
Sbjct: 489 RRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKL 534



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 81/182 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +  EM+  G+  T+++   +     + G V   E V ++M   G+ PD+     
Sbjct: 177 FQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRGVCPDSVSYKL 236

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           M   Y R+G+    +  L  M +  +  D +T  ++I+ +   GF  ++   F       
Sbjct: 237 MAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDKWVELG 296

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           LKP+++ +TS +    ++   ++  E+ EEM+  G  P+  T   LI     +   E+  
Sbjct: 297 LKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAF 356

Query: 235 TL 236
            L
Sbjct: 357 RL 358



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 1/201 (0%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SD     ++M R G      +  L+++ + + G  ++     ++  + GLKP+     S+
Sbjct: 248 SDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSL 307

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL-PAKR 174
           +N   + G  ++  E+L  M K  +  ++ T+  LI+   + G+ EK   LF  L  +  
Sbjct: 308 INGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDD 367

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
            KP+V T+TS +  Y ++    R   +   M + G  P+  T   LI   S     E+  
Sbjct: 368 YKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAY 427

Query: 235 TLVRTMHKDMKTALPIYFNLY 255
            L+  M K+  +A    +N +
Sbjct: 428 ELMDLMGKEGFSANIFTYNAF 448



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 50/112 (44%)

Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
           V++ M+ ++  +G+F++   ++  ME       + T N +  + G  G +   E +F  +
Sbjct: 163 VMDCMVRVFAEIGKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEM 222

Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
             + + PD V++     AY R           ++M+  G   D  T  ++IS
Sbjct: 223 RVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMIS 274



 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 19/196 (9%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A   F +M + G+ P M ++  L+ A+S+   + + E +  +    GL P      SM+
Sbjct: 495 EALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMI 554

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             Y R        +    M       D  TY  LI+   +   +++   L++++  K L 
Sbjct: 555 CGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLS 614

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           P  VT  +    Y ++                    D  TA V++     +  I  V TL
Sbjct: 615 PCEVTRLTLAYEYCKQD-------------------DSATAMVILERLDKKLWIRTVNTL 655

Query: 237 VRTMHKDMKTALPIYF 252
           +R +  + K  + + F
Sbjct: 656 IRKLCSERKVGMAVLF 671


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 92/198 (46%), Gaps = 1/198 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A    +EM+R G +P++ ++  L+ AY    +    +G++++MH  G  P+      
Sbjct: 317 LKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTI 376

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++  G+ G+ ++  +    +++   A D S YN LI I  R G ++    + + +    
Sbjct: 377 VMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTG 436

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           + P++ T+ + ++A     L    L++  +M +  C PD  T   L+  C     ++ + 
Sbjct: 437 ISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLL 496

Query: 235 TLVRTM-HKDMKTALPIY 251
            L+  M  KD+      Y
Sbjct: 497 FLICHMFRKDITPDFSTY 514



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 1/188 (0%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           +SDA   F +M R G+    K+  +LL    K  +V +  G   Q  K  + PD    N+
Sbjct: 248 WSDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAF-QALKGTIPPDESSFNT 306

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +++ + +    ++  E +  ME+  ++  ++TY  LI  Y      + ++G+   +  K 
Sbjct: 307 LVHGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKG 366

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             P+++T+T  + A  +    +  L+ F+++   GC  D      LI       +++   
Sbjct: 367 CTPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDAN 426

Query: 235 TLVRTMHK 242
            +V  MH+
Sbjct: 427 FVVEEMHR 434



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 9/187 (4%)

Query: 43  TPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
           TPN+  +   ++         +A   F+++K+ G       +  L+    + G +     
Sbjct: 368 TPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANF 427

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
           V+ +MH++G+ P+    N++++        E   ++L  ME+ S   DI TY  L+ +  
Sbjct: 428 VVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCC 487

Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK-KLYRRCLEIFEEMIDAGCYPDG 214
           R  +++ +  L   +  K + PD  T+T  +    R  +L + CL   EEM+  G  P  
Sbjct: 488 RRKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCL-FLEEMVLKGFTPQQ 546

Query: 215 GTAKVLI 221
            T  +++
Sbjct: 547 ATFDLVL 553


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             +A   F  MK LG+ P +     L+  +    ++     V++ M + G+KPD    ++
Sbjct: 547 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++N +  +G  ++ EE+ T M +G    DI  ++IL   Y R G  EK E +   +    
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQV 233
           ++P+VV +T  ++ +      ++ ++++++M    G  P+  T + LI       Q  + 
Sbjct: 667 VRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKA 726

Query: 234 TTLVRTMHKD----MKTALPIYFNLYGEKGVARSNLGQYIGN 271
             L++ M        +  + +  + +   GV+ SN    +G+
Sbjct: 727 EELLKDMEGKNVVPTRKTMQLIADGWKSIGVSNSNDANTLGS 768



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 13/197 (6%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH++F  +   G  P++ ++  L+TA ++  +      +I+++ K+GLKPDT + N+++
Sbjct: 337 EAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAII 396

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ-SLPAKRL 175
           N     G  ++  ++   M++       ST+N LI  YG+ G +E+   L    L  + L
Sbjct: 397 NASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEML 456

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-------CSSED 228
           +P+  T    + A+  ++       I  +M   G  PD  T   L  A       C++ED
Sbjct: 457 QPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAED 516

Query: 229 QIEQVTTLVRTMHKDMK 245
            I     + R +H  +K
Sbjct: 517 MI-----IPRMLHNKVK 528



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 98/218 (44%), Gaps = 13/218 (5%)

Query: 27  PYPSHFMLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHML 79
           P  +H +    +   H P+L  +   +       +F    ++  ++++ G+ P       
Sbjct: 335 PQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNA 394

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
           ++ A S++GN+ +   +  +M +SG KP     N+++  YG++G+ E+   +L  M +  
Sbjct: 395 IINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDE 454

Query: 140 -YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
               +  T NIL+  +     IE+   +   + +  +KPDVVT+ +   AY+R  +   C
Sbjct: 455 MLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYAR--IGSTC 512

Query: 199 LE---IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
                I   M+     P+  T   +++    E ++E+ 
Sbjct: 513 TAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEA 550



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 11/194 (5%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG-VINQMHKSGLKPDTFVIN 113
             +A  +  +M+  G+ P + +   L  AY++ G+    E  +I +M  + +KP+     
Sbjct: 476 IEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF--IEKMEGLFQSLP 171
           +++N Y   G+ E+       M++     ++  +N LI      GF  I  M+G+ + + 
Sbjct: 536 TIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIK-----GFLNINDMDGVGEVVD 590

Query: 172 AKR---LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
                 +KPDVVT+++ + A+S     +RC EI+ +M++ G  PD     +L    +   
Sbjct: 591 LMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAG 650

Query: 229 QIEQVTTLVRTMHK 242
           + E+   ++  M K
Sbjct: 651 EPEKAEQILNQMRK 664



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 1/169 (0%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
           ++S   L+    + G   +   + N + + G KP      +++    R   F  +  +++
Sbjct: 319 VRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLIS 378

Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
            +EK     D   +N +IN     G +++   +F+ +     KP   T+ + +  Y +  
Sbjct: 379 KVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIG 438

Query: 194 LYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
                  + + M+ D    P+  T  +L+ A  ++ +IE+   +V  M 
Sbjct: 439 KLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487



 Score = 40.4 bits (93), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--------GSYAADISTYNILINI 153
           K   KP  F      NL      F+  EE    +          G+   D+ +   L+N 
Sbjct: 269 KKDYKPAVFEEKKEANLADVEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNG 328

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
               G  ++   +F +L  +  KP ++T+T+ + A +R+K +   L +  ++   G  PD
Sbjct: 329 LIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPD 388

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK 242
                 +I+A S    ++Q   +   M +
Sbjct: 389 TILFNAIINASSESGNLDQAMKIFEKMKE 417


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 92/178 (51%), Gaps = 8/178 (4%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           Y + A  +F+E+        + S   +++ Y++TGN  +   +  +M K+ ++PD   + 
Sbjct: 184 YIASAQKMFDEIP----IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMV 239

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
           S+++   +    E   +V + ++   + +++   N LI++Y + G +E   GLF+ L  K
Sbjct: 240 SVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK 299

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
               DV++W + +  Y+   LY+  L +F+EM+ +G  P+  T   ++ AC+    IE
Sbjct: 300 ----DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIE 353



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 31/232 (13%)

Query: 10  DLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEE----- 64
           + CV   +PH   F+ LPY      I+       PNL   I++  F   HA+  +     
Sbjct: 42  EFCVL--SPH---FDGLPYA-----ISVFETIQEPNLL--IWNTMFR-GHALSSDPVSAL 88

Query: 65  -----MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
                M  LG+ P   +   LL + +K+    + + +   + K G   D +V  S++++Y
Sbjct: 89  YLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMY 148

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G+ E   +V       S   D+ +Y  LI  Y   G+I   + +F  +P K    DV
Sbjct: 149 VQNGRLEDARKVFDQ----SSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK----DV 200

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
           V+W + ++ Y+     +  LE+F+EM+     PD  T   ++SAC+    IE
Sbjct: 201 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIE 252



 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 6/152 (3%)

Query: 96  VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNI-LINI 153
           +  +M +SG  P+   + S+L     LG  E    +   + K     A+ S++   LI++
Sbjct: 323 LFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDM 382

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           Y + G IE  + +F S+  + L     +W + +  ++         +IF  M      PD
Sbjct: 383 YAKCGDIEAAQQVFDSILNRSLS----SWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD 438

Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
             T   L+SACS    ++    + R+M +D K
Sbjct: 439 DITFVGLLSACSHSGMLDLGRHIFRSMKEDYK 470


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F  A  +  +MK  G  P + ++  ++  + K G + +   V+      GL PD      
Sbjct: 373 FDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTM 432

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++  + + G      ++   M + S   DI TY  +I +Y +   +E+ + LF    +  
Sbjct: 433 LITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIG 492

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
           L P   T+TS +A Y R       L++FE M+  GC PD  T   LIS    E ++E+  
Sbjct: 493 LVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEAR 552

Query: 235 TLVRTM 240
            L  TM
Sbjct: 553 ALFETM 558



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 83/151 (54%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + ++ +++  Y K G +A+ E ++ +M + GL P+T    ++++ + R G F++  E+
Sbjct: 320 PNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFEL 379

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           +  M+   +  +I TYN +I  + + G I++   + +   ++ L PD VT+T  +  + +
Sbjct: 380 MNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCK 439

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
           +      L++F +M +  C+PD  T   +I+
Sbjct: 440 QGHITYALDLFNQMAENSCHPDIDTYTTIIA 470



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 6/199 (3%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVI 112
           Y   A  V EEM   G+ P + +H  L+    K G   +   +  ++ KS   KP+    
Sbjct: 266 YVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTY 325

Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
             M+  Y + G+  + E +L  M +   A + +TY  LI+ + RGG  ++   L   +  
Sbjct: 326 TVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKL 385

Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           +   P++ T+ + +  + +K   ++  ++       G  PD  T  +LI+    +  I  
Sbjct: 386 EGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITY 445

Query: 233 VTTLVRTM-----HKDMKT 246
              L   M     H D+ T
Sbjct: 446 ALDLFNQMAENSCHPDIDT 464



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/188 (19%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 54  YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
           +F+ A   F+ M   G+ P  +S   L+    + G   + + ++  M + G   D+    
Sbjct: 164 HFAHARQAFDGM---GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCT 220

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
            ++  + R G+F  +  +   M +     ++  Y   ++   + G++++   + + +  K
Sbjct: 221 VVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGK 280

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSEDQIEQ 232
            LKP+V T TS +    +     R   +F +++ +  Y P+  T  V+I     E ++ +
Sbjct: 281 GLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLAR 340

Query: 233 VTTLVRTM 240
              L+  M
Sbjct: 341 AEMLLGRM 348


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 11  LCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFV-------FIFSIYFSDAHAVFE 63
           LC A+RA  +++          +L   +     P++F        F  S    DA  VFE
Sbjct: 125 LCKAERASEAYD----------LLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFE 174

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRL 122
           ++   G  P + ++  L+    K G + +   +  +M KSG   P+T   NS+++ + R+
Sbjct: 175 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 234

Query: 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW 182
           G+ ++   +L  M +   + D+ TY  L+N + +   ++    L   +  K L PDVVT+
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294

Query: 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
           TS +    R+      + I  EM    C P   T   ++      +Q+E+
Sbjct: 295 TSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEE 344



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 97/208 (46%), Gaps = 15/208 (7%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P+++ +   I+         +A    EEM    +TP + ++ +L+    K G V +   +
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA---DISTYNILINI 153
           +++M K  + P     NS+++    L + E+  E    +E+  Y+    DI TY  LI  
Sbjct: 104 LSKMRKKCV-PTAVTYNSLIS---GLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITG 159

Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYP 212
           + +    +    +F+ L A+  +PDVVT++  +    ++   +  +++F  MI +G C P
Sbjct: 160 FCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMP 219

Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
           +  T   LIS      ++++   L+  M
Sbjct: 220 NTVTYNSLISGFCRMGKMDEAMNLLERM 247



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 79/170 (46%), Gaps = 3/170 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             DA+ +  +M R G+TP + +   L+    +   ++    ++ +M +    P  +  N+
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L+ Y R  Q E+  + +  +E+     ++ ++NI+I    +     +   L +    +R
Sbjct: 332 ILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 389

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISA 223
             PDVV +T+ +    R+K       ++ +M++  GC P+  T   L++ 
Sbjct: 390 CNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTG 439



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 90/198 (45%), Gaps = 3/198 (1%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           S+A+ + EEM   G  P + ++  L+T + K+        V  Q+   G +PD    + +
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCL 191

Query: 116 LNLYGRLGQFEKMEEVLTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           ++   + G+ ++  ++   M K GS   +  TYN LI+ + R G +++   L + +    
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
             PDVVT+T+ +  + +        ++  +M   G  PD  T   L+     E+++    
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAV 311

Query: 235 TLVRTMHKDMKTALPIYF 252
            ++  M +  K+  P  +
Sbjct: 312 HILGEMRR--KSCSPTVY 327



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 97  INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
           + +M   G  PD +   ++++      +  +  + L  M   +   ++ TY +LI+   +
Sbjct: 34  LGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCK 93

Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
           GG +++   L   +  K+  P  VT+ S ++   + +      ++ EEM+ +GC PD  T
Sbjct: 94  GGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFT 152

Query: 217 AKVLISA-CSSE 227
              LI+  C S+
Sbjct: 153 YTTLITGFCKSK 164


>gi|297820044|ref|XP_002877905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323743|gb|EFH54164.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 439

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 32/212 (15%)

Query: 44  PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
           P++F F   I        F     +  EM  LG+  +  ++  ++  Y K G   + E V
Sbjct: 163 PDVFTFTVLIRCCCKLGRFDLVKRIILEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMENV 222

Query: 97  INQMHKSGLK-PDTFVINSMLNL------------------------YGRLGQFEKMEEV 131
           +  M + G   PD F +NS++                          +G+ G ++KM  V
Sbjct: 223 LADMIEDGDSLPDVFTLNSIIGSSEMVAHEEDGELPDITTFNILILSFGKAGMYKKMSSV 282

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           +  MEK  ++    TYNI+I  +G+ G IEKM+ +F+ +  + +KP+ +++ S + AYS+
Sbjct: 283 MDFMEKRFFSLTTVTYNIVIETFGKAGKIEKMDDVFRKMKYQGVKPNSISYCSLVNAYSK 342

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             L  +   I  +++++    D      +I+A
Sbjct: 343 AGLVGKIDSILRQIVNSDVVLDTPFFNCIINA 374



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 77/150 (51%)

Query: 60  AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
           +V + M++   + T  ++ +++  + K G + K + V  +M   G+KP++    S++N Y
Sbjct: 281 SVMDFMEKRFFSLTTVTYNIVIETFGKAGKIEKMDDVFRKMKYQGVKPNSISYCSLVNAY 340

Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
            + G   K++ +L  +       D   +N +IN YG+ G +  M+ L+  +  ++ KPD 
Sbjct: 341 SKAGLVGKIDSILRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDK 400

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
           +T+ + +  Y    ++    E+ ++MI  G
Sbjct: 401 ITFATMIKTYKAHGIFDAVQELEKQMISTG 430



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 19/205 (9%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSML 116
           A  +FE M   G+ PT+  +  L+  Y K+  + K    +  M   S  KPD F    ++
Sbjct: 113 ASLLFEVMLSEGLKPTIDVYTSLIAVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
               +LG+F+ ++ ++  M          TYN +I+ YG+ G  E+ME +   +      
Sbjct: 173 RCCCKLGRFDLVKRIILEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMENVLADMIEDGDS 232

Query: 177 -PDVVTWTSRLAAYSRKKLYRRCLEIFEEMI---DAGCYPDGGTAKVLISACSSEDQIEQ 232
            PDV T  S + +               EM+   + G  PD  T  +LI +       ++
Sbjct: 233 LPDVFTLNSIIGS--------------SEMVAHEEDGELPDITTFNILILSFGKAGMYKK 278

Query: 233 VTTLVRTMHKDMKTALPIYFNLYGE 257
           +++++  M K   +   + +N+  E
Sbjct: 279 MSSVMDFMEKRFFSLTTVTYNIVIE 303



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 4/197 (2%)

Query: 44  PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103
           P++F  + SI  S      EE   L   P + +  +L+ ++ K G   K   V++ M K 
Sbjct: 234 PDVFT-LNSIIGSSEMVAHEEDGEL---PDITTFNILILSFGKAGMYKKMSSVMDFMEKR 289

Query: 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163
                T   N ++  +G+ G+ EKM++V   M+      +  +Y  L+N Y + G + K+
Sbjct: 290 FFSLTTVTYNIVIETFGKAGKIEKMDDVFRKMKYQGVKPNSISYCSLVNAYSKAGLVGKI 349

Query: 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           + + + +    +  D   +   + AY +        E++ +M +  C PD  T   +I  
Sbjct: 350 DSILRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKT 409

Query: 224 CSSEDQIEQVTTLVRTM 240
             +    + V  L + M
Sbjct: 410 YKAHGIFDAVQELEKQM 426



 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
           Y     TY  L  + G     ++   LF+ + ++ LKP +  +TS +A Y + +L  +  
Sbjct: 90  YEPKCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLIAVYGKSELLDKAF 149

Query: 200 EIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              E M   + C PD  T  VLI  C    + + V  ++  M
Sbjct: 150 STLEYMKSVSDCKPDVFTFTVLIRCCCKLGRFDLVKRIILEM 191


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,177,463,699
Number of Sequences: 23463169
Number of extensions: 166295501
Number of successful extensions: 487585
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7454
Number of HSP's successfully gapped in prelim test: 4218
Number of HSP's that attempted gapping in prelim test: 391024
Number of HSP's gapped (non-prelim): 65604
length of query: 271
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 131
effective length of database: 9,074,351,707
effective search space: 1188740073617
effective search space used: 1188740073617
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 75 (33.5 bits)