BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036275
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQM-----HKSGLKPDTFVINSMLNLYGRLGQF 125
T +K + LL AYS GNV K G + + H LKPD I+ +NL L
Sbjct: 57 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD--FIDGYINLAAALVAA 114
Query: 126 EKMEEVLTAMEKG-SYAADI-STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTW 182
ME + A Y D+ + L N+ G +E+ + + L A +P+ V W
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY--LKAIETQPNFAVAW 172
Query: 183 TS 184
++
Sbjct: 173 SN 174
>pdb|2HYP|A Chain A, Crystal Structure Of Rv0805 D66a Mutant
Length = 280
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
+YG +++ L + L L+PD + +T LAA YR+ + E
Sbjct: 32 RLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLAAKGEPAAYRKLRGLVE 83
>pdb|3D19|A Chain A, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|B Chain B, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|C Chain C, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|D Chain D, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|E Chain E, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
pdb|3D19|F Chain F, Crystal Structure Of A Conserved Metalloprotein From
Bacillus Cereus
Length = 283
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-----NIYGRGGFIEKMEGLFQS-- 169
N + RL FE +E++ + + I +N + NI+G F K+ GL +
Sbjct: 50 NQFYRL--FEHIEQIAHSYTNETDPEQIKRFNAEVQQAATNIWG---FKRKILGLILTCK 104
Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
LP + P +V TSR A Y RK+L +++ E +DA PD
Sbjct: 105 LPGQNNFPLLVDHTSREADYFRKRL----IQLNEGKLDA--LPDA 143
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 143 DISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLE 200
++S+ + + GR G + + G+F + + V V W +LAA++ K E
Sbjct: 2 ELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIK------E 55
Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
+ DA Y D I A SE+ ++ T+ RT + D+K
Sbjct: 56 VPAFAADAIGYLDA------IVASFSEEDAARIKTIERTTNHDVKA 95
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
+YG + + E+ EE K YAA + + +++YG+
Sbjct: 121 IYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQ 159
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 143 DISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLE 200
++S+ + + GR G + + G+F + + V V W +LAA++ K E
Sbjct: 2 ELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIK------E 55
Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
+ DA Y D I A SE+ ++ T+ RT + D+K
Sbjct: 56 VPAFAADAIGYLDA------IVASFSEEDAARIKTIERTTNHDVKA 95
>pdb|3VND|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|C Chain C, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|D Chain D, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|E Chain E, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|F Chain F, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|G Chain G, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|H Chain H, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
Length = 267
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGV 260
F + + G G + L + +S D + + T VR H DM L +Y NL G+
Sbjct: 55 FSDPLADGPVIQGANLRSLAAGTTSSDCFD-IITKVRAQHPDMPIGLLLYANLVFANGI 112
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli
Adenylosuccinate Lyase
Length = 462
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 143 DISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLE 200
++S+ + + GR G + + G+F + + V V W +LAA++ K E
Sbjct: 2 ELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIK------E 55
Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
+ DA Y D I A SE+ ++ T+ RT + D+K
Sbjct: 56 VPAFAADAIGYLDA------IVASFSEEDAARIKTIERTTNHDVKA 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,963,446
Number of Sequences: 62578
Number of extensions: 315844
Number of successful extensions: 689
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 19
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)