BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036275
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 294 bits (753), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 134/187 (71%), Positives = 161/187 (86%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
SDA AVFEEMKRLGI PTMKSHMLLL+AYSK +V KCE ++ +M ++G++PDTFV+NSM
Sbjct: 386 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM 445
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
LNLYGRLGQF KME++L ME G ADISTYNILINIYG+ GF+E++E LF L K
Sbjct: 446 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF 505
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
+PDVVTWTSR+ AYSRKKLY +CLE+FEEMID+GC PDGGTAKVL+SACSSE+Q+EQVT+
Sbjct: 506 RPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTS 565
Query: 236 LVRTMHK 242
++RTMHK
Sbjct: 566 VLRTMHK 572
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 4/200 (2%)
Query: 64 EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
EM+ P + ++ L+ A+++ G K E + Q+ + GL+PD +V N+++ Y R G
Sbjct: 289 EMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 348
Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
E+ + M+ D ++YNI+++ YGR G E +F+ + + P + +
Sbjct: 349 YPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHM 408
Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
L+AYS+ + +C I +EM + G PD +++ Q ++ ++ M
Sbjct: 409 LLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENG 468
Query: 244 MKTA----LPIYFNLYGEKG 259
TA I N+YG+ G
Sbjct: 469 PCTADISTYNILINIYGKAG 488
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 6/171 (3%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAY-----SKTGNVAKCEGVINQMHKSGLKPDTFVI 112
A V EM+ ++P + + AY + GN + V +M + KP T
Sbjct: 209 AEVVLVEMQNHHVSPKTIG-VTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETY 267
Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
N M+NLYG+ + ++ M +I TY L+N + R G EK E +F+ L
Sbjct: 268 NLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE 327
Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
L+PDV + + + +YSR EIF M GC PD + +++ A
Sbjct: 328 DGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDA 378
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF---V 111
+ +A +++ ++ PT ++ LL+ AY G + + E V+ +M + P T V
Sbjct: 171 YKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTV 230
Query: 112 INSMLN-LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
N+ + L R G E+ +V M++ TYN++IN+YG+ L+ +
Sbjct: 231 YNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEM 290
Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
+ + KP++ T+T+ + A++R+ L + EIFE++ + G PD
Sbjct: 291 RSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPD 333
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 93 CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
CE + + KS +PD N +++ YG+ Q+++ E + + + Y TY +LI
Sbjct: 142 CEWI---LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIK 198
Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA----AYSRKKLYRRCLEIFEEMIDA 208
Y G IE+ E + + + P + T A RK +++F+ M
Sbjct: 199 AYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRD 258
Query: 209 GCYPDGGTAKVLIS 222
C P T ++I+
Sbjct: 259 RCKPTTETYNLMIN 272
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 44 PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
P+ FV + ++Y F+ + EM+ T + ++ +L+ Y K G + + E +
Sbjct: 437 PDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEEL 496
Query: 97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
++ + +PD S + Y R + K EV M A D T +L++
Sbjct: 497 FVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSS 556
Query: 157 GGFIEKMEGLFQSL 170
+E++ + +++
Sbjct: 557 EEQVEQVTSVLRTM 570
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 43 TPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
T N+ + I+ + + +F E+K P + + + AYS+ KC V +M
Sbjct: 476 TYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEM 535
Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
SG PD +L+ Q E++ VL M KG
Sbjct: 536 IDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKG 573
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 2/185 (1%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A V EM G +P++ ++ L++AY++ G + + + NQM + G KPD F ++L
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRL 175
+ + R G+ E + M +I T+N I +YG RG F E M+ +F + L
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK-IFDEINVCGL 450
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
PD+VTW + LA + + + +F+EM AG P+ T LISA S EQ T
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510
Query: 236 LVRTM 240
+ R M
Sbjct: 511 VYRRM 515
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 93/187 (49%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+A + +M G P + ++ LL+ + + G V + +M +G KP+ N+
Sbjct: 365 LDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNA 424
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+ +YG G+F +M ++ + + DI T+N L+ ++G+ G ++ G+F+ +
Sbjct: 425 FIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
P+ T+ + ++AYSR + + + ++ M+DAG PD T +++A + EQ
Sbjct: 485 FVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE 544
Query: 235 TLVRTMH 241
++ M
Sbjct: 545 KVLAEME 551
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%)
Query: 59 HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118
H++ EE+ I P L+ SK + + E +++ + G PD +NSM+++
Sbjct: 579 HSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSI 638
Query: 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
YGR K VL M++ + ++TYN L+ ++ R K E + + + AK +KPD
Sbjct: 639 YGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPD 698
Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
++++ + + AY R R IF EM ++G PD T I + +++ E+ +VR
Sbjct: 699 IISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758
Query: 239 TMHK 242
M K
Sbjct: 759 YMIK 762
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 7/216 (3%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F++ +F+E+ G++P + + LL + + G ++ GV +M ++G P+ N+
Sbjct: 435 FTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNT 494
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ Y R G FE+ V M D+STYN ++ RGG E+ E + + R
Sbjct: 495 LISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR 554
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
KP+ +T+ S L AY+ K + EE+ P K L+ CS D + +
Sbjct: 555 CKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAE 614
Query: 235 TLV-----RTMHKDMKTALPIYFNLYGEKG-VARSN 264
R D+ T L ++YG + VA++N
Sbjct: 615 RAFSELKERGFSPDI-TTLNSMVSIYGRRQMVAKAN 649
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%)
Query: 60 AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
++ E+MK GI P ++ L+T + + V +M +G D N++L++Y
Sbjct: 265 SLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVY 324
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
G+ + ++ +VL M ++ I TYN LI+ Y R G +++ L + K KPDV
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDV 384
Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
T+T+ L+ + R + IFEEM +AGC P+ T I
Sbjct: 385 FTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFI 426
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 5/223 (2%)
Query: 42 HTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV-AKCEGVINQM 100
+T + F S + +A VF++M+ G PT+ ++ ++L + K G K ++ +M
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270
Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
G+ PD + N+++ R ++ +V M+ ++ D TYN L+++YG+
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRP 330
Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
++ + + P +VT+ S ++AY+R + +E+ +M + G PD T L
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390
Query: 221 ISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
+S ++E ++ M K + +YG +G
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRG 433
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A F E+K G +P + + +++ Y + VAK GV++ M + G P NS++
Sbjct: 612 EAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM 671
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
++ R F K EE+L + DI +YN +I Y R + +F + +
Sbjct: 672 YMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIV 731
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
PDV+T+ + + +Y+ ++ + + MI GC P+ T ++
Sbjct: 732 PDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 93/184 (50%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A ++FEEM+ G P + + + Y G + + ++++ GL PD N++L
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
++G+ G ++ V M++ + + T+N LI+ Y R G E+ +++ + + P
Sbjct: 463 VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
D+ T+ + LAA +R ++ + ++ EM D C P+ T L+ A ++ +I + +L
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLA 582
Query: 238 RTMH 241
++
Sbjct: 583 EEVY 586
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
S A +F ++ G + + S+ L++A++ +G + V +M + G KP N +
Sbjct: 190 SSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVI 249
Query: 116 LNLYGRLGQ-FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
LN++G++G + K+ ++ M+ A D TYN LI RG ++ +F+ + A
Sbjct: 250 LNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAG 309
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
D VT+ + L Y + + +++ EM+ G P T LISA + + +++
Sbjct: 310 FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAM 369
Query: 235 TLVRTM 240
L M
Sbjct: 370 ELKNQM 375
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 76/163 (46%), Gaps = 1/163 (0%)
Query: 79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
++++ K G V+ + N + + G D + S+++ + G++ + V ME+
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237
Query: 139 SYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
+ TYN+++N++G+ G K+ L + + + + PD T+ + + R L++
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
++FEEM AG D T L+ + ++ ++ M
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM 340
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
+ A+ V + MK G TP+M ++ L+ +S++ + K E ++ ++ G+KPD N++
Sbjct: 646 AKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTV 705
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
+ Y R + + + M D+ TYN I Y E+ G+ + +
Sbjct: 706 IYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGC 765
Query: 176 KPDVVTWTSRLAAYSR 191
+P+ T+ S + Y +
Sbjct: 766 RPNQNTYNSIVDGYCK 781
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTA----MEKGSYAA--DISTYNILINIYGRGGF 159
KP++ + +L LG +K + L A M++ Y + D S I+I++ G+ G
Sbjct: 130 KPES-TSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGR 188
Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
+ +F L DV ++TS ++A++ YR + +F++M + GC P T V
Sbjct: 189 VSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNV 248
Query: 220 LISACSS-EDQIEQVTTLVRTMHKD 243
+++ ++T+LV M D
Sbjct: 249 ILNVFGKMGTPWNKITSLVEKMKSD 273
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%)
Query: 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
S F + + E+ GI P + S+ ++ AY + + + ++M SG+ PD
Sbjct: 677 SADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVIT 736
Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
N+ + Y FE+ V+ M K + +TYN +++ Y
Sbjct: 737 YNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 43/86 (50%)
Query: 39 LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
++ + ++ + + DA +F EM+ GI P + ++ + +Y+ + GV+
Sbjct: 699 IISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758
Query: 99 QMHKSGLKPDTFVINSMLNLYGRLGQ 124
M K G +P+ NS+++ Y +L +
Sbjct: 759 YMIKHGCRPNQNTYNSIVDGYCKLNR 784
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 93/179 (51%)
Query: 64 EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
EM G P + S+ +LL AY+K+G++ + GV +QM +G P+ + +LNL+G+ G
Sbjct: 307 EMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSG 366
Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
+++ + ++ M+ + D +TYNILI ++G GG+ +++ LF + + ++PD+ T+
Sbjct: 367 RYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYE 426
Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
+ A + L+ +I + M P +I A E+ TMH+
Sbjct: 427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHE 485
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 5/198 (2%)
Query: 60 AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
+F EM+ GI P + ++ LL+A + G + E V M+ G+ PD + ++ +
Sbjct: 233 GLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETF 292
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
G+L + EK+ ++L M G DI++YN+L+ Y + G I++ G+F + A P+
Sbjct: 293 GKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNA 352
Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
T++ L + + Y ++F EM + PD T +LI ++V TL
Sbjct: 353 NTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHD 412
Query: 240 M-----HKDMKTALPIYF 252
M DM+T I F
Sbjct: 413 MVEENIEPDMETYEGIIF 430
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 6/214 (2%)
Query: 61 VFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
+F+ M+R + P + ++++ + G + KC V ++M G+ F +++N Y
Sbjct: 127 LFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY 186
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPD 178
GR G++E E+L M+ + I TYN +IN RGG E + GLF + + ++PD
Sbjct: 187 GRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPD 246
Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238
+VT+ + L+A + + L +F M D G PD T L+ ++E+V L+
Sbjct: 247 IVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLG 306
Query: 239 TMHKDMK----TALPIYFNLYGEKGVARSNLGQY 268
M T+ + Y + G + +G +
Sbjct: 307 EMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVF 340
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 5/204 (2%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
+ + MK I+P++ ++ ++ A ++ G + G+ +M G++PD N++L+
Sbjct: 198 LLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSAC 257
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
G ++ E V M G D++TY+ L+ +G+ +EK+ L + + PD+
Sbjct: 258 AIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDI 317
Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQVTTL 236
++ L AY++ + + +F +M AGC P+ T VL++ D + Q+
Sbjct: 318 TSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLE 377
Query: 237 VRTMHKDMKTAL-PIYFNLYGEKG 259
+++ + D A I ++GE G
Sbjct: 378 MKSSNTDPDAATYNILIEVFGEGG 401
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 78/168 (46%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A VF M GI P + ++ L+ + K + K ++ +M G PD N +L
Sbjct: 265 EAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLL 324
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
Y + G ++ V M+ + +TY++L+N++G+ G + + LF + +
Sbjct: 325 EAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTD 384
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
PD T+ + + ++ + +F +M++ PD T + +I AC
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFAC 432
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A VF +M+ G TP ++ +LL + ++G + +M S PD N ++
Sbjct: 335 EAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILI 394
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
++G G F+++ + M + + D+ TY +I G+GG E + Q + A +
Sbjct: 395 EVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIV 454
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
P +T + A+ + LY L F M + G P
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNP 490
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
DA + + M I P+ K++ ++ A+ + + N MH+ G P +S+L
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLL 499
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ R G ++ E +L+ + + T+N I Y +GG E+ + + R
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCD 559
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
PD T + L+ YS +L C E FEEM + P ++++ ++ + V L
Sbjct: 560 PDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNEL 619
Query: 237 VRTM 240
+ M
Sbjct: 620 LEEM 623
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 76/152 (50%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+ +A F M +G P++++ LL ++++ G V + E +++++ SG+ + N+
Sbjct: 473 YEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNA 532
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+ Y + G+FE+ + MEK D T ++++Y +++ F+ + A
Sbjct: 533 QIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASD 592
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
+ P ++ + LA Y + + + E+ EEM+
Sbjct: 593 ILPSIMCYCMMLAVYGKTERWDDVNELLEEML 624
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 83/185 (44%), Gaps = 2/185 (1%)
Query: 43 TPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100
T N+ + +F YF + +F +M I P M+++ ++ A K G ++ M
Sbjct: 389 TYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM 448
Query: 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160
+ + P + ++ +G+ +E+ M + I T++ L+ + RGG +
Sbjct: 449 TANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLV 508
Query: 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
++ E + L + + T+ +++ AY + + ++ + +M + C PD T + +
Sbjct: 509 KESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568
Query: 221 ISACS 225
+S S
Sbjct: 569 LSVYS 573
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
Query: 46 LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
L V+ F+ + FEEMK I P++ + ++L Y KT ++ +M + +
Sbjct: 569 LSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRV 628
Query: 106 KPDTFVINSML-NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
VI M+ Y ++ +E VL + I YN L++ G E+
Sbjct: 629 SNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAA 688
Query: 165 GLFQSLPAKRLKPDV-----VTWTSRLAAYSRKKLY 195
+ + L P++ + W+ + S +Y
Sbjct: 689 RVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMY 724
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 6/200 (3%)
Query: 48 VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV--INQMHKSGL 105
V+ S FS A + + M++ G P + S L+ A K+G + V ++ + SGL
Sbjct: 234 VYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGL 293
Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
+PD N++L+ R + +V ME D+ TYN +I++YGR G + E
Sbjct: 294 RPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAER 353
Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
LF L K PD VT+ S L A++R++ + E++++M G D T +I
Sbjct: 354 LFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYG 413
Query: 226 SEDQIEQVTTLVRTMHKDMK 245
+ Q++ L ++KDMK
Sbjct: 414 KQGQLD----LALQLYKDMK 429
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 7/187 (3%)
Query: 42 HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
TP+L + + S Y + A A+F M R G +PT++S +LL A G + +
Sbjct: 783 RTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELY 842
Query: 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
V+ ++ G K I ML+ + R G +++++ ++M+ Y I Y ++I +
Sbjct: 843 VVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELL 902
Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
+G + E + + K ++ W S L Y+ + Y++ +++++ + + G PD
Sbjct: 903 CKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDE 962
Query: 215 GTAKVLI 221
T LI
Sbjct: 963 TTYNTLI 969
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 8/211 (3%)
Query: 44 PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
P+L+ + + S+Y ++A +F E++ G P ++ LL A+++ N K + V
Sbjct: 330 PDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEV 389
Query: 97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYG 155
QM K G D N+++++YG+ GQ + ++ M+ S D TY +LI+ G
Sbjct: 390 YQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLG 449
Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
+ + L + +KP + T+++ + Y++ + F M+ +G PD
Sbjct: 450 KANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNL 509
Query: 216 TAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246
V++ ++ + L R M D T
Sbjct: 510 AYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 80/157 (50%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+ ++ MK G PT++ + +++ K V E ++++M ++ K + + NSML
Sbjct: 875 EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+Y + ++K +V +++ D +TYN LI +Y R E+ L Q + L
Sbjct: 935 KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
P + T+ S ++A+ ++K + ++FEE++ G D
Sbjct: 995 PKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 89/182 (48%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+ + V EE++ +G + S +L+L A+++ GN+ + + + + M +G P +
Sbjct: 838 LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRM 897
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
M+ L + + E +++ ME+ ++ +++ +N ++ +Y +K ++Q +
Sbjct: 898 MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG 957
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
L+PD T+ + + Y R + + ++M + G P T K LISA + +EQ
Sbjct: 958 LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAE 1017
Query: 235 TL 236
L
Sbjct: 1018 QL 1019
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 93/194 (47%), Gaps = 1/194 (0%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+ + + ++M+ LG+ P + ++ L++A+ K + + E + ++ GLK D ++M+
Sbjct: 980 EGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMM 1039
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ G K E++L M+ ++T ++L+ Y G ++ E + +L ++
Sbjct: 1040 KISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVE 1099
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
+ ++S + AY R K Y +E EM G PD + A S + +V L
Sbjct: 1100 LTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLL 1159
Query: 237 VRTMHKDMKTALPI 250
++ + +D+ LPI
Sbjct: 1160 LKAL-EDIGFDLPI 1172
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 5/174 (2%)
Query: 91 AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME-KGSYAADISTYNI 149
A+ V + + SG + V SM+ +Y +LG E +V+ E KG + A Y
Sbjct: 698 AEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTD 757
Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
+I YG+ +K E + +L PD+ TW S ++AY++ Y R IF M+ G
Sbjct: 758 IIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG 817
Query: 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
P + +L+ A + ++E++ +V + K K+++ + + + G
Sbjct: 818 PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAG 871
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 90 VAKCEGVINQMHKSGLKPDTF------------VINSMLNLYGRLGQFEKMEEVLTAMEK 137
VA GV+ + ++ L + F V N+M+ +Y R G+F K +E++ AM +
Sbjct: 194 VAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQ 253
Query: 138 GSYAADISTYNILINIYGR-GGFIEKME-GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195
D+ ++N LIN + GG + L + L+PD +T+ + L+A SR
Sbjct: 254 RGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNL 313
Query: 196 RRCLEIFEEMIDAGCYPDGGTAKVLIS 222
+++FE+M C PD T +IS
Sbjct: 314 DGAVKVFEDMEAHRCQPDLWTYNAMIS 340
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
DA + EM+ + +L Y+ + K V ++ ++GL+PD N+++
Sbjct: 910 DAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+Y R + E+ ++ M + TY LI+ +G+ +E+ E LF+ L +K LK
Sbjct: 970 IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLK 1029
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
D + + + + ++ + M +AG P T +L+ + SS ++ +
Sbjct: 1030 LDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKV 1089
Query: 237 VRTMHKDMKTAL 248
+ + KD + L
Sbjct: 1090 LSNL-KDTEVEL 1100
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 1/173 (0%)
Query: 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
++ AY K K E V+ + +SG PD NS+++ Y + G +E+ + M +
Sbjct: 758 IIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG 817
Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
+ + + NIL++ G +E++ + + L K + L A++R
Sbjct: 818 PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVK 877
Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIY 251
+I+ M AG P +++I ++ +V M + + K L I+
Sbjct: 878 KIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIW 930
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A A+ EM +GI PT++++ L+ Y+K G + E + M +SG KPD + ML
Sbjct: 456 EAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
++ R + K + M + + Y ++I
Sbjct: 516 DVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMI 550
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 7/191 (3%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
++++A VF +++ G + ++ Y K G V+NQ G F +
Sbjct: 696 HYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFH---FACS 752
Query: 114 SM----LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
M + YG+ ++K E V+ + + D+ T+N L++ Y + G E+ +F +
Sbjct: 753 PMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNT 812
Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
+ P V + L A + EE+ D G + +++ A +
Sbjct: 813 MMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGN 872
Query: 230 IEQVTTLVRTM 240
I +V + +M
Sbjct: 873 IFEVKKIYSSM 883
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
S A + + MK GI PT+ + LL+ +YS +GN + E V++ + + ++ T +S+
Sbjct: 1049 SKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSV 1108
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
++ Y R + E L M+K D
Sbjct: 1109 IDAYLRSKDYNSGIERLLEMKKEGLEPD 1136
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+AH F ++ G T ++ + L+ + + G V GV ++ +SG+ + + +N M+
Sbjct: 183 EAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMV 242
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
N + G+ EK+ L+ +++ DI TYN LI+ Y G +E+ L ++P K
Sbjct: 243 NALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFS 302
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSEDQIE 231
P V T+ + + + Y R E+F EM+ +G PD T + +L+ AC D +E
Sbjct: 303 PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE 358
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+ A VF EM R G++P ++ LL K G+V + E V + M + PD +S
Sbjct: 321 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSS 380
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
M++L+ R G +K ++++ D Y ILI Y R G I L + +
Sbjct: 381 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
DVVT+ + L ++K+ ++F EM + +PD T +LI ++
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAM 500
Query: 235 TLVRTMHK 242
L + M +
Sbjct: 501 ELFQKMKE 508
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 2/177 (1%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A ++ +M I PT S+ +L+ A G++A+ V ++M +KP + NSM+
Sbjct: 534 AKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIK 593
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--L 175
Y R G E L M + D +YN LI + R + K GL + + ++ L
Sbjct: 594 GYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGL 653
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
PDV T+ S L + R+ + + +MI+ G PD T +I+ S+D + +
Sbjct: 654 VPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTE 710
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 83/162 (51%)
Query: 62 FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
+++ G+ P + ++ L++AYS G + + ++N M G P + N+++N +
Sbjct: 258 LSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCK 317
Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
G++E+ +EV M + + D +TY L+ + G + + E +F + ++ + PD+V
Sbjct: 318 HGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVC 377
Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
++S ++ ++R + L F + +AG PD +LI
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 86/198 (43%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+A +F EM + P + +L+ + K GN+ + +M + ++ D N+
Sbjct: 461 LGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNT 520
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+L+ +G++G + +E+ M +Y+IL+N G + + ++ + +K
Sbjct: 521 LLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKN 580
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
+KP V+ S + Y R E+MI G PD + LI E+ + +
Sbjct: 581 IKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAF 640
Query: 235 TLVRTMHKDMKTALPIYF 252
LV+ M ++ +P F
Sbjct: 641 GLVKKMEEEQGGLVPDVF 658
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A V++E+ R G+ + + +++ A K G + K ++Q+ + G+ PD N++++
Sbjct: 219 AWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLIS 278
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
Y G E+ E++ AM ++ + TYN +IN + G E+ + +F + L P
Sbjct: 279 AYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSP 338
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
D T+ S L +K ++F +M PD
Sbjct: 339 DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPD 374
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+ ++A V++EM I PT+ ++ Y ++GN + E + +M G PD N
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYN 624
Query: 114 SML-------NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
+++ N+ G +KMEE E+G D+ TYN +++ + R +++ E +
Sbjct: 625 TLIYGFVREENMSKAFGLVKKMEE-----EQGGLVPDVFTYNSILHGFCRQNQMKEAEVV 679
Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
+ + + + PD T+T + + + I +EM+ G PD
Sbjct: 680 LRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A + M G +P + ++ ++ K G + + V +M +SGL PD+ S+L
Sbjct: 288 EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 347
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ G + E+V + M D+ ++ +++++ R G ++K F S+ L
Sbjct: 348 MEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLI 407
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
PD V +T + Y RK + + + EM+ GC D T ++ + + L
Sbjct: 408 PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 467
Query: 237 VRTM 240
M
Sbjct: 468 FNEM 471
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 3/217 (1%)
Query: 48 VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
+F S A F +K G+ P + +L+ Y + G ++ + N+M + G
Sbjct: 384 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAM 443
Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
D N++L+ + + +++ M + + D T ILI+ + + G ++ LF
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELF 503
Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSS 226
Q + KR++ DVVT+ + L + + EI+ +M+ P + +L++A CS
Sbjct: 504 QKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSK 563
Query: 227 EDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARS 263
E + K++K + I ++ KG RS
Sbjct: 564 GHLAEAFRVWDEMISKNIKPTVMICNSMI--KGYCRS 598
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 4/163 (2%)
Query: 80 LLTAYSKTGNVAKCEGVINQMHK--SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137
LL ++G V++ E ++N + S + V + ++ Y + + + E T +
Sbjct: 136 LLRMIRRSG-VSRLE-IVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRS 193
Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
+ I N LI R G++E G++Q + + +V T + A + +
Sbjct: 194 KGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEK 253
Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
++ + G YPD T LISA SS+ +E+ L+ M
Sbjct: 254 VGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM 296
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 96/196 (48%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A + +EM+ G TP + ++ +L+ K G + + +N M SG +P+ N +L
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
G++ E++L M + ++ + T+NILIN R G + + + + +P +P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+ +++ L + ++K R +E E M+ GCYPD T +++A + ++E ++
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 238 RTMHKDMKTALPIYFN 253
+ + + I +N
Sbjct: 438 NQLSSKGCSPVLITYN 453
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 3/179 (1%)
Query: 62 FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
E M G P + L+ + + G K ++ + SG PD N M++ Y +
Sbjct: 125 LENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCK 184
Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
G+ + L+ +++ S + D+ TYN ++ G +++ + + + PDV+T
Sbjct: 185 AGE---INNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241
Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+T + A R +++ +EM D GC PD T VL++ E ++++ + M
Sbjct: 242 YTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 11/244 (4%)
Query: 33 MLINFLLLQHTPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85
+L + L +P++ F I F A + E+M + G P S+ LL +
Sbjct: 331 LLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFC 390
Query: 86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
K + + + +M G PD N+ML + G+ E E+L + + +
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLI 450
Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
TYN +I+ + G K L + AK LKPD +T++S + SR+ ++ F E
Sbjct: 451 TYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF 510
Query: 206 IDAGCYPDGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMK---TALPIYFNLYGEKGVA 261
G P+ T +++ C S + LV +++ K T+ I +G+A
Sbjct: 511 ERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMA 570
Query: 262 RSNL 265
+ L
Sbjct: 571 KEAL 574
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 84/201 (41%)
Query: 40 LQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
L + P L F A E M G P + ++ +LTA K G V ++NQ
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439
Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
+ G P N++++ + G+ K ++L M D TY+ L+ R G
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499
Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
+++ F ++P+ VT+ S + + + R ++ MI+ GC P+ + +
Sbjct: 500 VDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTI 559
Query: 220 LISACSSEDQIEQVTTLVRTM 240
LI + E ++ L+ +
Sbjct: 560 LIEGLAYEGMAKEALELLNEL 580
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 3/169 (1%)
Query: 86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
+TG + + + M G PD +++ + RLG+ K ++L +E D+
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173
Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
TYN++I+ Y + G I + + + PDVVT+ + L + ++ +E+ + M
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230
Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
+ CYPD T +LI A + + L+ M T + +N+
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
DA + +M R G +P++ + +L+ + G + + ++ +M + G +P++ N +L
Sbjct: 327 DAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLL 386
Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
+ + + + ++ E L M +G Y DI TYN ++ + G +E + L +K
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRGCYP-DIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
P ++T+ + + ++ + +++ +EM PD T L+ S E ++++
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 5/198 (2%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A + E ++ G P + ++ ++++ Y K G + V+++M S PD N++L
Sbjct: 156 AAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILR 212
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
G+ ++ EVL M + D+ TY ILI R + L + + P
Sbjct: 213 SLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTP 272
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSSEDQIEQVTTL 236
DVVT+ + ++ ++ +M +GC P+ T +++ S CS+ ++ L
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332
Query: 237 VRTMHKDMKTALPIYFNL 254
+ K ++ + FN+
Sbjct: 333 ADMLRKGFSPSV-VTFNI 349
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 78/183 (42%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A V + M + P + ++ +L+ A + V ++++M G PD N ++N
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN 282
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ G+ ++ + L M ++ T+NI++ G E L + K P
Sbjct: 283 GICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP 342
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
VVT+ + RK L R ++I E+M GC P+ + L+ E ++++ +
Sbjct: 343 SVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYL 402
Query: 238 RTM 240
M
Sbjct: 403 ERM 405
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 69/158 (43%)
Query: 65 MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
+ R+ ++P + ++ +L + +G + + V+++M + PD ++ R
Sbjct: 195 LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG 254
Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
++L M D+ TYN+L+N + G +++ +P+ +P+V+T
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
L + + ++ +M+ G P T +LI+
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
N+ L R G+ E+ + L M DI LI + R G K + + L
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSSEDQIE 231
PDV+T+ ++ Y + L + + M PD T +L S C S +
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQ 222
Query: 232 QVTTLVRTMHKD 243
+ L R + +D
Sbjct: 223 AMEVLDRMLQRD 234
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 100/204 (49%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A +VFEEM G+ PT K++ +LL A++ +G V + + V M + + PD + +ML
Sbjct: 332 EALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTML 391
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ Y E E+ ++ + +I TY LI Y + +EKM +++ + +K
Sbjct: 392 SAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIK 451
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
+ T+ + A R K + L ++EM G PD VL+S S++D++E+ L
Sbjct: 452 ANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 511
Query: 237 VRTMHKDMKTALPIYFNLYGEKGV 260
++ +Y + E+GV
Sbjct: 512 TGIRNETATIIARVYGSDDDEEGV 535
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 70/236 (29%)
Query: 78 MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG-------------- 123
++L+TAY K GN E V++ + K G P+ +++ YGR G
Sbjct: 143 LMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQS 202
Query: 124 ---------------------QFEKMEEVLTAM---EKGSYAADISTYNILINIYGRGGF 159
+F++ EEV + +K D Y+++I +Y + G
Sbjct: 203 SGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGN 262
Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLA-------------------------------- 187
EK +F S+ K + VT+ S ++
Sbjct: 263 YEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIK 322
Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
AY R + L +FEEM+DAG P +L+ A + +EQ T+ ++M +D
Sbjct: 323 AYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD 378
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 35/231 (15%)
Query: 46 LFVFIFSIYFSDAHAVFEEM---KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI----- 97
L F+ F +A VFE + K+ + P K + +++ Y K GN K V
Sbjct: 216 LKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVG 275
Query: 98 ---------------------------NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
+QM +S ++PD ++ YGR + E+
Sbjct: 276 KGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALS 335
Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
V M YNIL++ + G +E+ + +F+S+ R+ PD+ ++T+ L+AY
Sbjct: 336 VFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYV 395
Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
+ F+ + G P+ T LI + + +E++ + M
Sbjct: 396 NASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 446
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%)
Query: 39 LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
L +T L ++ + A F+ +K G P + ++ L+ Y+K +V K V
Sbjct: 384 LWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYE 443
Query: 99 QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
+M SG+K + ++ ++++ GR F ME D N+L+++
Sbjct: 444 KMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSL 498
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%)
Query: 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208
+LI YG+ G E + L P+V+++T+ + +Y R IF M +
Sbjct: 144 MLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSS 203
Query: 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248
G P T ++++ D+ ++ + T+ + K+ L
Sbjct: 204 GPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPL 243
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 42 HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
H+ + +S+ + A+A FEEM + GI P+++++ +L A+ ++G+ K +
Sbjct: 486 HSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKL 545
Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
M + +K N++L+ + + G + + +V++ K + TYN+L+N Y RGG
Sbjct: 546 MLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQ 605
Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
K+ L + + A LKPD +T+++ + A+ R + ++R + M+ +G PD
Sbjct: 606 DAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 1/170 (0%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVIN 113
+ DA V+E M ++ + P + +L+T K G AK + +M + G+K V
Sbjct: 289 YDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFG 348
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
++ + G E+ + T MEK ++ YN L++ Y + IE++EGLF + K
Sbjct: 349 GLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDK 408
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
LKP T+ + AY+R+ + EM D G P+ + LISA
Sbjct: 409 GLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISA 458
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 1/168 (0%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A + EM++ GI + L+ AY+K+ ++ + EG+ +M GLKP N ++
Sbjct: 362 EALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILM 421
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPAKRL 175
+ Y R Q + +E +L ME ++ +Y LI+ YGR + M F + L
Sbjct: 422 DAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGL 481
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
KP ++T+ + AYS + + FEEM G P T ++ A
Sbjct: 482 KPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDA 529
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 1/166 (0%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
+FE+M G+ + L+ ++ G + + +M K G++ +T V N++++ Y
Sbjct: 331 IFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYN 390
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
+ E++E + T M +TYNIL++ Y R + +E L + + L+P+V
Sbjct: 391 KSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVK 450
Query: 181 TWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
++T ++AY R KK+ + F M G P + LI A S
Sbjct: 451 SYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYS 496
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 1/156 (0%)
Query: 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
S + + +F EM+ G+ P+ ++ +L+ AY++ E ++ +M GL+P+
Sbjct: 392 SNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKS 451
Query: 112 INSMLNLYGRLGQFEKM-EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
+++ YGR + M + M+K +Y LI+ Y G+ EK F+ +
Sbjct: 452 YTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEM 511
Query: 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
+ +KP V T+TS L A+ R + +EI++ M+
Sbjct: 512 CKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLML 547
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 88/183 (48%), Gaps = 1/183 (0%)
Query: 59 HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK-CEGVINQMHKSGLKPDTFVINSMLN 117
+ EM+ LG+ P +KS+ L++AY +T ++ +M K GLKP + ++++
Sbjct: 434 ETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIH 493
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
Y G EK M K + TY +++ + R G K+ +++ + +++K
Sbjct: 494 AYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKG 553
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+T+ + L ++++ LY ++ E G P T +L++A + Q ++ L+
Sbjct: 554 TRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLL 613
Query: 238 RTM 240
+ M
Sbjct: 614 KEM 616
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A V E ++G+ P++ ++ +L+ AY++ G AK ++ +M LKPD+ ++M+
Sbjct: 573 EARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMI 632
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
+ R+ F++ M K D +Y L I
Sbjct: 633 YAFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAI 669
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
++L + GR + + L +LP K DV + + ++ S + Y E++E M
Sbjct: 242 SVLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDK 301
Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY--FNLYGEKGVARSN 264
YPD T +LI+ T+ K ++A ++ F EKGV S
Sbjct: 302 INVYPDNVTCAILIT----------------TLRKAGRSAKEVWEIFEKMSEKGVKWSQ 344
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%)
Query: 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
P + ++ +LL A++++G V + + + S + PD + N +++ YG+ G ++ME V
Sbjct: 206 PNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAV 265
Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
LT M DI T+N+LI+ YG+ EKME F+SL + KP + T+ S + Y +
Sbjct: 266 LTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGK 325
Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
++ + +F++M D P T + +I
Sbjct: 326 ARMIDKAEWVFKKMNDMNYIPSFITYECMI 355
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 35/233 (15%)
Query: 46 LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
L F S +A+F+++ ++P + + ++ AY K G + + E V+ +M +
Sbjct: 215 LRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNEC 274
Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
KPD N +++ YG+ +FEKME+ ++ + + T+N +I YG+ I+K E
Sbjct: 275 KPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEW 334
Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE---------------MIDAGC 210
+F+ + P +T+ + Y R EIFEE M++ C
Sbjct: 335 VFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYC 394
Query: 211 --------------------YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
+PD T K L A + D EQV L++ M KD
Sbjct: 395 RNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKD 447
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 92/189 (48%), Gaps = 5/189 (2%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC----EGVINQMHK-SGLKPDTFVI 112
A +F EMK G P + L+TA+ T + AK G +++M +P+
Sbjct: 152 AMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTY 211
Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
N +L + + G+ +++ + ++ + D+ T+N +++ YG+ G I++ME + + +
Sbjct: 212 NILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRS 271
Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
KPD++T+ + +Y +K+ + + + F+ ++ + P T +I I++
Sbjct: 272 NECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDK 331
Query: 233 VTTLVRTMH 241
+ + M+
Sbjct: 332 AEWVFKKMN 340
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 8/190 (4%)
Query: 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM----LNLYGRLGQFEKMEEVLTAM 135
L++ K G + ++M SG +PD V N++ L+ + EK+ L M
Sbjct: 139 LISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKM 198
Query: 136 EKG--SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
KG ++ TYNIL+ + + G ++++ LF+ L + PDV T+ + AY +
Sbjct: 199 -KGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNG 257
Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT-MHKDMKTALPIYF 252
+ + + M C PD T VLI + + + E++ ++ M K LP +
Sbjct: 258 MIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFN 317
Query: 253 NLYGEKGVAR 262
++ G AR
Sbjct: 318 SMIINYGKAR 327
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 66/159 (41%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F F+ + R PT+ + ++ Y K + K E V +M+ P
Sbjct: 294 FEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYEC 353
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
M+ +YG G + E+ + + ST N ++ +Y R G + + LF + A R
Sbjct: 354 MIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFR 413
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
+ PD T+ AY++ + + + ++M G P+
Sbjct: 414 VHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPN 452
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 91/169 (53%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F +A +F EM+ LGI S+ LL+ Y+K G + ++ +M G+K D N+
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+L YG+ G+++++++V T M++ ++ TY+ LI+ Y +GG ++ +F+ +
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAG 544
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
L+ DVV +++ + A + L + + +EM G P+ T +I A
Sbjct: 545 LRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA 593
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 92/186 (49%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A + +M I P + S+ ++ ++K G + + +M G+ D N++L+
Sbjct: 393 AFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLS 452
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+Y ++G+ E+ ++L M D+ TYN L+ YG+ G ++++ +F + + + P
Sbjct: 453 IYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLP 512
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+++T+++ + YS+ LY+ +EIF E AG D LI A + +L+
Sbjct: 513 NLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLI 572
Query: 238 RTMHKD 243
M K+
Sbjct: 573 DEMTKE 578
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 11/211 (5%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG----NVAKCEGVINQMHKSGLKPDTFVI 112
+A +VF MK G+ P + ++ ++ A K G VAK ++M ++G++PD
Sbjct: 286 EAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAK---FFDEMQRNGVQPDRITF 342
Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
NS+L + R G +E + M D+ +YN L++ +GG ++ + +P
Sbjct: 343 NSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPV 402
Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
KR+ P+VV++++ + +++ + L +F EM G D + L+S + + E+
Sbjct: 403 KRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEE 462
Query: 233 VTTLVRTMHK-DMKTALPIYFNL---YGEKG 259
++R M +K + Y L YG++G
Sbjct: 463 ALDILREMASVGIKKDVVTYNALLGGYGKQG 493
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 1/149 (0%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A +FE G T+ + L++AY ++G + V N M + GL+P+ N++++
Sbjct: 252 AKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVID 311
Query: 118 LYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
G+ G +F+++ + M++ D T+N L+ + RGG E LF + +R++
Sbjct: 312 ACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIE 371
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
DV ++ + L A + EI +M
Sbjct: 372 QDVFSYNTLLDAICKGGQMDLAFEILAQM 400
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 83/189 (43%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F F+EM+R G+ P + LL S+ G + ++M ++ D F N+
Sbjct: 320 FKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNT 379
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+L+ + GQ + E+L M ++ +Y+ +I+ + + G ++ LF +
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG 439
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
+ D V++ + L+ Y++ L+I EM G D T L+ + + ++V
Sbjct: 440 IALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVK 499
Query: 235 TLVRTMHKD 243
+ M ++
Sbjct: 500 KVFTEMKRE 508
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A +F+EM I + S+ LL A K G + ++ QM + P+ +++++
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVID 417
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ + G+F++ + M A D +YN L++IY + G E+ + + + + +K
Sbjct: 418 GFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKK 477
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
DVVT+ + L Y ++ Y ++F EM P+ T LI S
Sbjct: 478 DVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYS 525
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
+++ + G V + + G + +++++ YGR G E+ V +M++
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 140 YAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
++ TYN +I+ G+GG +++ F + ++PD +T+ S LA SR L+
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAA 358
Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
+F+EM + D + L+ A Q++
Sbjct: 359 RNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMD 391
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170
+ ++M++ GR G+ + + G Y + ++ LI+ YGR G E+ +F S+
Sbjct: 235 LASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSM 294
Query: 171 PAKRLKPDVVTWTSRLAAYSRKKL-YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
L+P++VT+ + + A + + +++ + F+EM G PD T L++ CS
Sbjct: 295 KEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGL 354
Query: 230 IEQVTTLVRTM 240
E L M
Sbjct: 355 WEAARNLFDEM 365
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 21/208 (10%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+ + VF EMKR + P + ++ L+ YSK G + + + +GL+ D + ++
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSA 554
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ--SLPA 172
+++ + G ++ M K + ++ TYN +I+ +GR +++ SLP
Sbjct: 555 LIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPF 614
Query: 173 KRLKPDVVTWT---------SRLAAYSRKKLYRRC----------LEIFEEMIDAGCYPD 213
+T T +L S + + C LE+F +M P+
Sbjct: 615 SSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPN 674
Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMH 241
T +++ACS + E + L+ +
Sbjct: 675 VVTFSAILNACSRCNSFEDASMLLEELR 702
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 36/225 (16%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV-AKCEGVINQMHKSGLK------- 106
+ A +FE MK +G +PT+ ++ ++L + K G K GV+++M GLK
Sbjct: 226 YEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCS 285
Query: 107 ----------------------------PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
P T N++L ++G+ G + + VL ME+
Sbjct: 286 TVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEEN 345
Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
S AD TYN L+ Y R GF ++ G+ + + K + P+ +T+T+ + AY +
Sbjct: 346 SCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEA 405
Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
L++F M +AGC P+ T ++S + + ++ ++ M +
Sbjct: 406 LKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN 450
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH------------------- 101
V +MK G PT S+ L+L Y+K GN E + N++
Sbjct: 548 VISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANF 607
Query: 102 ----------------KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145
K G KPD + NSML+++ R +++ E +L ++ + + D+
Sbjct: 608 KCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLV 667
Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
TYN L+++Y R G K E + ++L +LKPD+V++ + + + R+ L + + + EM
Sbjct: 668 TYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM 727
Query: 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
+ G P T +S ++ ++ ++ M K+
Sbjct: 728 TERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKN 765
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 84/169 (49%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+ + F K+ G P M +L+ +++ + EG++ + + GL PD NS
Sbjct: 612 LAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNS 671
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++++Y R G+ K EE+L +EK D+ +YN +I + R G +++ + + +
Sbjct: 672 LMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERG 731
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
++P + T+ + ++ Y+ ++ ++ E M C P+ T K+++
Sbjct: 732 IRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDG 780
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 4/222 (1%)
Query: 46 LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
L VF + +++A +V +EM+ ++ L+ AY + G + GVI M K G+
Sbjct: 323 LQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGV 382
Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
P+ ++++ YG+ G+ ++ ++ +M++ + TYN ++++ G+ +M
Sbjct: 383 MPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIK 442
Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-- 223
+ + + P+ TW + LA K + + +F EM G PD T LISA
Sbjct: 443 MLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYG 502
Query: 224 -CSSE-DQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARS 263
C SE D + + R T N KG RS
Sbjct: 503 RCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRS 544
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 82/184 (44%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A F E+K G P ++ LL + K G + V+ +M ++ D+ N ++
Sbjct: 299 EAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELV 358
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
Y R G ++ V+ M K + TY +I+ YG+ G ++ LF S+
Sbjct: 359 AAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCV 418
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
P+ T+ + L+ +K +++ +M GC P+ T +++ C ++ + V +
Sbjct: 419 PNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRV 478
Query: 237 VRTM 240
R M
Sbjct: 479 FREM 482
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 1/151 (0%)
Query: 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEVL 132
++++ +L AYS+TG K + +M + G P N +L+++G++G+ + K+ VL
Sbjct: 210 VRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVL 269
Query: 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192
M D T + +++ R G + + + F L + +P VT+ + L + +
Sbjct: 270 DEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKA 329
Query: 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
+Y L + +EM + C D T L++A
Sbjct: 330 GVYTEALSVLKEMEENSCPADSVTYNELVAA 360
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 100/216 (46%), Gaps = 4/216 (1%)
Query: 48 VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
++ + + +A V E M + G+ P ++ ++ AY K G + + M ++G P
Sbjct: 360 AYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 419
Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
+T N++L+L G+ + +M ++L M+ + + +T+N ++ + G G + + +F
Sbjct: 420 NTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVF 479
Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
+ + + +PD T+ + ++AY R +++ EM AG T L++A + +
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARK 539
Query: 228 DQIEQVTTLVRTMH----KDMKTALPIYFNLYGEKG 259
++ M K +T+ + Y + G
Sbjct: 540 GDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 575
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Query: 94 EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
E ++ + LK D VI + + GR Q+ ++L + Y D+ Y +++
Sbjct: 160 EWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHA 219
Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYP 212
Y R G EK LF+ + P +VT+ L + + + +R+ L + +EM G
Sbjct: 220 YSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKF 279
Query: 213 DGGTAKVLISACSSEDQIEQV 233
D T ++SAC+ E + +
Sbjct: 280 DEFTCSTVLSACAREGLLREA 300
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 42 HTPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
+ P++ +F + SI+ + A + E ++ G++P + ++ L+ Y + G K E
Sbjct: 627 YKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAE 686
Query: 95 GVINQMHKSGLKPD-----------------------------------TFVINSMLNLY 119
++ + KS LKPD F N+ ++ Y
Sbjct: 687 EILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGY 746
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
+G F ++E+V+ M K + T+ ++++ Y R G
Sbjct: 747 TAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 95/186 (51%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
DA ++ EM++ G++P ++ LL+ AY G V+ +M ++P++FV +
Sbjct: 355 LKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSR 414
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+L + G+++K +VL M+ D YN++I+ +G+ ++ F + ++
Sbjct: 415 LLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEG 474
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
++PD VTW + + + + + E+FE M GC P T ++I++ +++ + +
Sbjct: 475 IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMK 534
Query: 235 TLVRTM 240
L+ M
Sbjct: 535 RLLGKM 540
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+ D + +MK GI P + +H L+ Y K+G + +M GLKP + + N+
Sbjct: 530 WDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNA 589
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N Y + G E+ M + N LIN +G + + Q +
Sbjct: 590 LINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENG 649
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
+KPDVVT+T+ + A R +++ ++EEMI +GC PD +L SA
Sbjct: 650 VKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSA 698
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 11/225 (4%)
Query: 44 PNLFVFIFSIY-FSD------AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
PN FVF + F D V +EMK +G+ P + + +++ + K +
Sbjct: 407 PNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTT 466
Query: 97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
++M G++PD N++++ + + G+ EE+ AME+ +TYNI+IN YG
Sbjct: 467 FDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGD 526
Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
+ M+ L + ++ + P+VVT T+ + Y + + +E EEM G P
Sbjct: 527 QERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTM 586
Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD-MKT---ALPIYFNLYGE 257
LI+A + EQ R M D +K AL N +GE
Sbjct: 587 YNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGE 631
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A +FE M+R G P ++ +++ +Y + ++ +M G+ P+ ++++
Sbjct: 498 AEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVD 557
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+YG+ G+F E L M+ + YN LIN Y + G E+ F+ + + LKP
Sbjct: 558 VYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP 617
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
++ S + A+ + + + M + G PD T L+ A D+ ++V +
Sbjct: 618 SLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVY 677
Query: 238 RTM 240
M
Sbjct: 678 EEM 680
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 79/154 (51%)
Query: 69 GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
G++ + + +++A + +G + E + ++ +SG+KP T N++L Y + G +
Sbjct: 299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 358
Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
E +++ MEK + D TY++LI+ Y G E + + + A ++P+ ++ LA
Sbjct: 359 ESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAG 418
Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
+ + +++ ++ +EM G PD V+I
Sbjct: 419 FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVID 452
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 80/186 (43%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A F+ M GI P + L+ + K G E + M + G P N M+N
Sbjct: 463 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMIN 522
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
YG +++ M+ +L M+ ++ T+ L+++YG+ G + + + LKP
Sbjct: 523 SYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKP 582
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+ + + AY+++ L + + F M G P LI+A + + + ++
Sbjct: 583 SSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVL 642
Query: 238 RTMHKD 243
+ M ++
Sbjct: 643 QYMKEN 648
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 60/143 (41%)
Query: 99 QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
++ + L+ D ++N ++ + + G K ++L + +A +T +I+ G
Sbjct: 259 EIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSG 318
Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
+ E LF+ L +KP + + L Y + + + EM G PD T
Sbjct: 319 RTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYS 378
Query: 219 VLISACSSEDQIEQVTTLVRTMH 241
+LI A + + E +++ M
Sbjct: 379 LLIDAYVNAGRWESARIVLKEME 401
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 7/190 (3%)
Query: 43 TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
+P+ F + I + AH +F EM G TP + ++ +++ ++K N
Sbjct: 466 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALK 525
Query: 96 VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
+ M +G +PD + ++ + G G E+ E V T M++ ++ D Y +L++++G
Sbjct: 526 LYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWG 585
Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
+ G +EK +Q++ L+P+V T S L+ + R E+ + M+ G P
Sbjct: 586 KAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQ 645
Query: 216 TAKVLISACS 225
T +L+S C+
Sbjct: 646 TYTLLLSCCT 655
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 103/209 (49%), Gaps = 4/209 (1%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F + + +EM R G P ++ L+ +Y + + + V NQM ++G KPD +
Sbjct: 380 FGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCT 439
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++++ + G + ++ M+ G + D TY+++IN G+ G + LF + +
Sbjct: 440 LIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
P++VT+ + +++ + Y+ L+++ +M +AG PD T +++ +E+
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559
Query: 235 TLVRTM-HKDMKTALPIY---FNLYGEKG 259
+ M K+ P+Y +L+G+ G
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAG 588
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 1/197 (0%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
Y ++A VF +M+ G P ++ L+ ++K G + + +M GL PDTF +
Sbjct: 414 YLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYS 473
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
++N G+ G ++ M ++ TYNI+++++ + + L++ +
Sbjct: 474 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNA 533
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
+PD VT++ + +F EM PD +L+ +E+
Sbjct: 534 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593
Query: 234 TTLVRTM-HKDMKTALP 249
+ M H ++ +P
Sbjct: 594 WQWYQAMLHAGLRPNVP 610
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/187 (18%), Positives = 87/187 (46%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+ A +++ M+ G++P ++ +++ K G++ + +M G P+ N
Sbjct: 449 FLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
M++L+ + ++ ++ M+ + D TY+I++ + G G++E+ E +F + K
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
PD + + + + + + ++ M+ AG P+ T L+S ++I +
Sbjct: 569 NWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEA 628
Query: 234 TTLVRTM 240
L++ M
Sbjct: 629 YELLQNM 635
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%)
Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
+ G K D +M+ GR QF + ++L M + + TYN LI+ YGR ++
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416
Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
+ +F + KPD VT+ + + +++ +++++ M G PD T V+I
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVII 476
Query: 222 S 222
+
Sbjct: 477 N 477
>sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825,
chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2
SV=2
Length = 904
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 43 TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
TPN F + +Y F + +F KR G+ + S+ ++ AY K +
Sbjct: 696 TPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVI-SYNTIIAAYGKNKDYTNMSS 754
Query: 96 VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
I M G N++L+ YG+ Q EK +L M+K + D TYNI+INIYG
Sbjct: 755 AIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYG 814
Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
G+I+++ + + L L PD+ ++ + + AY + + + +EM PD
Sbjct: 815 EQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKV 874
Query: 216 TAKVLISACSSEDQ 229
T L++A D+
Sbjct: 875 TYTNLVTALRRNDE 888
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 1/175 (0%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A F M G+ P + + +L+ Y K NV + E + M K G+ ++ +SM+
Sbjct: 229 ASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCES-AYSSMIT 287
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+Y RL ++K EEV+ M++ + + +++N Y + G +E E + S+ A P
Sbjct: 288 IYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSP 347
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
+++ + + + Y + +F + + G PD + + +I D E+
Sbjct: 348 NIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEE 402
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 5/168 (2%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG--LKPDTFVINS 114
+A F M++ GI ++ ++T Y++ K E VI+ M + LK + +++
Sbjct: 263 EAEFAFSHMRKFGIVCE-SAYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLV-- 319
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
MLN Y + G+ E E +L +ME ++ +I YN LI YG+ +E +GLF L
Sbjct: 320 MLNAYSQQGKMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIG 379
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
L+PD ++ S + + R Y ++E+ G P+ LI+
Sbjct: 380 LEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLIN 427
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Query: 60 AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
FEEM R G TP + +LL Y K K + + G+ D N+++ Y
Sbjct: 685 GTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGV-VDVISYNTIIAAY 743
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
G+ + M + M+ ++ + YN L++ YG+ +EK + + + PD
Sbjct: 744 GKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDH 803
Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
T+ + Y + ++ +E+ ++G PD + LI A +E+ LV+
Sbjct: 804 YTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKE 863
Query: 240 MH 241
M
Sbjct: 864 MR 865
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 111/261 (42%), Gaps = 45/261 (17%)
Query: 42 HTPNLFVFIFSIY--FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
H + + I+++ FS+A ++ +K G+ +++ Y K G++ + V+
Sbjct: 559 HITSTMIDIYTVMGEFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEI 618
Query: 100 M-HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
M + + PD ++ ML +Y + +K++ + + K + YN +IN R
Sbjct: 619 MDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARAL 678
Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF-----EEMIDAGCYP- 212
++++ G F+ + P+ VT+ L Y + KL+++ E+F ++D Y
Sbjct: 679 PLDELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNT 738
Query: 213 -----------------------DGGTAKV-----LISACSSEDQIEQVTTLVRTMHKDM 244
DG + + L+ A + Q+E+ ++++ M K
Sbjct: 739 IIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKK-- 796
Query: 245 KTALP------IYFNLYGEKG 259
T+ P I N+YGE+G
Sbjct: 797 STSGPDHYTYNIMINIYGEQG 817
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 82/180 (45%), Gaps = 1/180 (0%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
++ +++ GI + + ++ ++ + + G +M + G P+T N +L++YG
Sbjct: 651 LYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGFTPNTVTFNVLLDVYG 710
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
+ F+K+ E L + K D+ +YN +I YG+ M +++ +
Sbjct: 711 KAKLFKKVNE-LFLLAKRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLE 769
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+ + L AY + K + I + M + PD T ++I+ + I++V +++ +
Sbjct: 770 AYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKEL 829
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 71/156 (45%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+ A V + MK+ + +++ +++L AYS+ G + E ++ M +G P+ N+
Sbjct: 295 YDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYNT 354
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++ YG++ + E + + + D ++Y +I +GR E+ + +Q L
Sbjct: 355 LITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCG 414
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
KP+ + + ++ ++ E+M GC
Sbjct: 415 YKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGC 450
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 41 QHTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
+T N+ + I+ + + V +E+K G+ P + S+ L+ AY G V + G++
Sbjct: 803 HYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVK 862
Query: 99 QMHKSGLKPDTFVINSMLNLYGRLGQF 125
+M + PD +++ R +F
Sbjct: 863 EMRGRNIIPDKVTYTNLVTALRRNDEF 889
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 8/216 (3%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A + ++ G+ + + +A K ++ + +M K G PD F N ++
Sbjct: 425 EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILI 484
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+GR+G+ ++ + +E+ DI +YN LIN G+ G +++ F+ + K L
Sbjct: 485 ASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLN 544
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
PDVVT+++ + + + + +FEEM+ GC P+ T +L+ + + L
Sbjct: 545 PDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDL 604
Query: 237 VRTMHKDMKTALPIYFNL--------YGEKGVARSN 264
M + T I + + +G+ + R N
Sbjct: 605 YSKMKQQGLTPDSITYTVLERLQSVSHGKSRIRRKN 640
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 92/187 (49%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+ S+AH +F +M + S+M +L + G + +++++H+ G+ DT + N
Sbjct: 387 HVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYN 446
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
++ + G+L Q + ++ M+K + DI TYNILI +GR G +++ +F+ L
Sbjct: 447 TVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERS 506
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
KPD++++ S + + F+EM + G PD T L+ +++E
Sbjct: 507 DCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMA 566
Query: 234 TTLVRTM 240
+L M
Sbjct: 567 YSLFEEM 573
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 83/166 (50%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
S H +FE+MK+ G +P + ++ +L+ ++ + G V + + ++ +S KPD NS
Sbjct: 458 ISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNS 517
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N G+ G ++ M++ D+ TY+ L+ +G+ +E LF+ + K
Sbjct: 518 LINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKG 577
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
+P++VT+ L + ++++ +M G PD T VL
Sbjct: 578 CQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVL 623
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 3/173 (1%)
Query: 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
LL AY ++ + +K V ++ + G K D F N +L+ L + EK +V M+K
Sbjct: 209 LLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDA---LAKDEKACQVFEDMKKRH 265
Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
D TY I+I GR G ++ GLF + + L +VV + + + ++ K+ + +
Sbjct: 266 CRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAI 325
Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252
++F M++ GC P+ T +L++ +E Q+ ++ +V + M + Y
Sbjct: 326 QVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYL 378
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 69/163 (42%)
Query: 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
L+ SK G+V++ + M +K + SML G+ + E+L+ + +
Sbjct: 378 LVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKG 437
Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
D YN + + G+ I + LF+ + PD+ T+ +A++ R +
Sbjct: 438 VVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAI 497
Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
IFEE+ + C PD + LI+ +++ + M +
Sbjct: 498 NIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQE 540
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 108 DTFVINSMLNLYGRLG---QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
D F+ N ++ + R +F+++ +L +M K + +IST NILI +G E ++
Sbjct: 132 DPFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGN---TEDLQ 188
Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
+ + LK + T+ L AY R + Y + +++ E+ G D +L+ A
Sbjct: 189 MCLRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDAL 248
Query: 225 SSEDQIEQVTTLVRTMH 241
+ +++ QV ++ H
Sbjct: 249 AKDEKACQVFEDMKKRH 265
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 14/211 (6%)
Query: 44 PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
PNL F +Y +A V +MK G+ P + LL+ Y+ G +A +
Sbjct: 234 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 293
Query: 97 INQMHKSGLKPD----TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
+N M K G +P+ T +I ++ R+ + + V ME+ ADI TY LI+
Sbjct: 294 MNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMR---VFVEMERYGCEADIVTYTALIS 350
Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
+ + G I+K + + K + P VT+ + A+ +K+ + CLE+ E+M GC+P
Sbjct: 351 GFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHP 410
Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
D V+I ++++ L M +
Sbjct: 411 DLLIYNVVIRLACKLGEVKEAVRLWNEMEAN 441
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+A VF EM+R G + ++ L++ + K G + K V++ M K G+ P
Sbjct: 323 MDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQ 382
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++ + + QFE+ E++ M++ D+ YN++I + + G +++ L+ + A
Sbjct: 383 IMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANG 442
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY--PDGGTAKVLISACSSEDQIE 231
L P V T+ + ++ + F+EM+ G + P GT K L++ +D++E
Sbjct: 443 LSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLE 501
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 91/187 (48%), Gaps = 2/187 (1%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A VFE+M R P ++ LL + + G + + + V+ QM ++GL+PD V ++L
Sbjct: 220 EASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLL 278
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRL 175
+ Y G+ +++ M K + +++ Y +LI R +++ +F +
Sbjct: 279 SGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGC 338
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
+ D+VT+T+ ++ + + + + + ++M G P T ++ A ++Q E+
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLE 398
Query: 236 LVRTMHK 242
L+ M +
Sbjct: 399 LIEKMKR 405
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 90/192 (46%), Gaps = 7/192 (3%)
Query: 55 FSDAHAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
F + EEM++ I P + ++L+ ++ V K V+++M K GL+PD +V
Sbjct: 147 FGAVWGLIEEMRKTNPELIEPEL--FVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYV 204
Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
+L+ + G ++ +V M + + ++ + L+ + R G + + + + +
Sbjct: 205 FGCLLDALCKNGSVKEASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMK 263
Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQI 230
L+PD+V +T+ L+ Y+ ++ +M G P+ VLI A C +E ++
Sbjct: 264 EAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRM 323
Query: 231 EQVTTLVRTMHK 242
++ + M +
Sbjct: 324 DEAMRVFVEMER 335
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVI 112
F + + E+MKR G P + + +++ K G V + + N+M +GL P DTFVI
Sbjct: 393 FEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVI 452
Query: 113 NSMLNLYGRLG-QFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSL 170
M+N + G E + +G ++A T L+N R +E + ++ +
Sbjct: 453 --MINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCI 510
Query: 171 PAK--RLKPDVVTWTSRL-AAYSR---KKLYRRCLEIFE 203
K + +V WT + A Y++ K+ CL++ E
Sbjct: 511 SNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMME 549
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 91/198 (45%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+ AVFE M G+ P + S+ L+ AY+ G V+ + ++G+ PD +L
Sbjct: 338 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLL 397
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
N YGR Q K +EV M K ++ TYN LI+ YG GF+ + +F+ + +K
Sbjct: 398 NSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIK 457
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
P+VV+ + LAA SR K + G + I + + ++E+ L
Sbjct: 458 PNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIAL 517
Query: 237 VRTMHKDMKTALPIYFNL 254
++M K A + F +
Sbjct: 518 YQSMRKKKVKADSVTFTI 535
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 4/199 (2%)
Query: 43 TPNLFVFIFSIYFSDAHAV--FEEM--KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
T N+ ++ S + A+ F M KR P + + ++ YS G + C V
Sbjct: 285 TFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFE 344
Query: 99 QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
M GLKP+ N+++ Y G VL +++ D+ +Y L+N YGR
Sbjct: 345 AMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSR 404
Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
K + +F + +R KP+VVT+ + + AY +EIF +M G P+ +
Sbjct: 405 QPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVC 464
Query: 219 VLISACSSEDQIEQVTTLV 237
L++ACS + V T++
Sbjct: 465 TLLAACSRSKKKVNVDTVL 483
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 78/171 (45%)
Query: 79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
+++ +++ V + G+ +M K KPD ++++N +GR GQ+ ++ M +
Sbjct: 148 MMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRA 207
Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
+ A STYN LIN G G + + + + + PD+VT L+AY + Y +
Sbjct: 208 AIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKA 267
Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
L FE M A PD T ++I S Q Q L +M + P
Sbjct: 268 LSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRP 318
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 100/211 (47%), Gaps = 6/211 (2%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+ +A V ++M G+ P + +H ++L+AY +K M + ++PDT N
Sbjct: 229 WREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNI 288
Query: 115 MLNLYGRLGQFEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
++ +LGQ + ++ +M ++ D+ T+ ++++Y G IE +F+++ A
Sbjct: 289 IIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVA 348
Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
+ LKP++V++ + + AY+ + L + ++ G PD + L+++ Q +
Sbjct: 349 EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGK 408
Query: 233 VTTLVRTMHKDMKTALPIYFN----LYGEKG 259
+ M K+ + + +N YG G
Sbjct: 409 AKEVFLMMRKERRKPNVVTYNALIDAYGSNG 439
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 36/238 (15%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+ ++A +F +M++ GI P + S LL A S++ + V++ G+ +T N
Sbjct: 440 FLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYN 499
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN--------------------- 152
S + Y + EK + +M K AD T+ ILI+
Sbjct: 500 SAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDL 559
Query: 153 --------------IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
Y + G + + E +F + +PDV+ +TS L AY+ + + +
Sbjct: 560 SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKA 619
Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIYFNLY 255
E+F EM G PD L+ A + Q V L+ M K++ ++F ++
Sbjct: 620 CELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIF 677
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 2/207 (0%)
Query: 39 LLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
L+ H L + +S A + FE MK + P + +++ SK G ++ + N
Sbjct: 248 LVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFN 307
Query: 99 QMH--KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
M ++ +PD S+++LY G+ E V AM +I +YN L+ Y
Sbjct: 308 SMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAV 367
Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
G + + + PDVV++T L +Y R + + E+F M P+ T
Sbjct: 368 HGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVT 427
Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
LI A S + + + R M +D
Sbjct: 428 YNALIDAYGSNGFLAEAVEIFRQMEQD 454
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 9/227 (3%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+ A +F EM++ P +++ L+ A+ + G +++ M ++ + P N
Sbjct: 158 WVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN 217
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
+++N G G + + EV M D+ T+NI+++ Y G K F+ +
Sbjct: 218 NLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGA 277
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSEDQIE 231
+++PD T+ + S+ + L++F M + A C PD T ++ S + +IE
Sbjct: 278 KVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIE 337
Query: 232 QVTTLVRTM-HKDMKTALPIY------FNLYGEKGVARSNLGQYIGN 271
+ M + +K + Y + ++G G A S LG N
Sbjct: 338 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQN 384
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 83/183 (45%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A VF M++ P + ++ L+ AY G +A+ + QM + G+KP+ + ++L
Sbjct: 409 AKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLA 468
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
R + ++ VL+A + + + YN I Y +EK L+QS+ K++K
Sbjct: 469 ACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKA 528
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
D VT+T ++ R Y + +EM D ++ A S + Q+ + ++
Sbjct: 529 DSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIF 588
Query: 238 RTM 240
M
Sbjct: 589 NQM 591
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 1/167 (0%)
Query: 75 KSHMLLLTAYSKTGNVAKCEGVINQMH-KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
K+ +L+ S+ G + C V M + + N M+ L+ R ++ +
Sbjct: 108 KNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFF 167
Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
M+K S D TY+ LIN +GR G L + + P T+ + + A
Sbjct: 168 EMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSG 227
Query: 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+R LE+ ++M D G PD T +++SA S Q + + M
Sbjct: 228 NWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELM 274
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN----IYGRGGFIEKMEGLFQ 168
N ML+L+G+ G+ E M ++ + ++ TY IL+ + +IE +E +
Sbjct: 709 NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSG 768
Query: 169 S--LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
+ P+ ++ D++++ R A + L R+ LE
Sbjct: 769 AGIQPSNQMYRDIISFGERSAGIEFEPLIRQKLE 802
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 82/186 (44%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A + + M GI K++ +L+ K V E + +M G+ PD F ++
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
N + +LG +K + M + ++ YN+L+ + R G IEK + L + K L
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
P+ VT+ + + Y + +F+EM G PD L+ C + +E+ T+
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754
Query: 237 VRTMHK 242
T K
Sbjct: 755 FGTNKK 760
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 45/243 (18%)
Query: 43 TPNLFV-------FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
TPN+ + F S A + +EM G+ P ++ ++ Y K+G++A+
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFR 718
Query: 96 VINQMHKSGLKPDTFV----------------------------------INSMLNLYGR 121
+ ++M GL PD+FV N+++N +
Sbjct: 719 LFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFK 778
Query: 122 LGQFEKMEEVLTAMEKGSY----AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
G+ E EVL + GS+ + TYNI+I+ + G +E + LF + L P
Sbjct: 779 FGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
V+T+TS L Y + +F+E I AG PD V+I+A E + LV
Sbjct: 839 TVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLV 898
Query: 238 RTM 240
M
Sbjct: 899 DQM 901
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 8/196 (4%)
Query: 44 PNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
PN F + I + F+ A +EM+ G+ P L+ Y K G V +
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSA 579
Query: 97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
M G+ D ++N + + + EE+ M A D+ +Y +LIN + +
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639
Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
G ++K +F + + L P+V+ + L + R + E+ +EM G +P+ T
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699
Query: 217 AKVLISA-CSSEDQIE 231
+I C S D E
Sbjct: 700 YCTIIDGYCKSGDLAE 715
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 83/185 (44%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
+A + EM G+ P ++ ++ Y + A + + +M + G+ P+ + +
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
+N Y + G+ + +M D TY +L+N + ++ E +F+ + K +
Sbjct: 564 INEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
PDV ++ + +S+ ++ IF+EM++ G P+ +L+ +IE+
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683
Query: 236 LVRTM 240
L+ M
Sbjct: 684 LLDEM 688
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/183 (18%), Positives = 80/183 (43%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
+ + EMK+ I + ++ ++ +G++ ++ +M SG +P+ + +++
Sbjct: 401 GYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIK 460
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ + +F VL M++ A DI YN LI + +++ + LKP
Sbjct: 461 TFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKP 520
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+ T+ + ++ Y + + +EM + G P+ LI+ + ++ + +
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAY 580
Query: 238 RTM 240
R+M
Sbjct: 581 RSM 583
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A + EM GI + + SK G + K + + + M SGL P S++
Sbjct: 331 AKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIE 390
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
Y R + E+L M+K + TY ++ G ++ + + + A +P
Sbjct: 391 GYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP 450
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+VV +T+ + + + + + + +EM + G PD LI S ++++ + +
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510
Query: 238 RTM 240
M
Sbjct: 511 VEM 513
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
KP+ N M++ + G E +E+ M+ + + TY L+N Y + G +M
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-----IDAGCYPDGGTAKVL 220
+F A ++PD + ++ + A+ ++ + + L + ++M +D GC T + L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921
Query: 221 ISACSSEDQIEQVTTLVRTM 240
+S + ++E ++ M
Sbjct: 922 LSGFAKVGEMEVAEKVMENM 941
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Query: 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
P ++ +++ K GN+ + + +QM + L P S+LN Y ++G+ +M V
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862
Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-----VVTWTSRL 186
D Y+++IN + + G K L + AK D + T + L
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922
Query: 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS-ACSSEDQ 229
+ +++ ++ E M+ PD T LI+ +C S +Q
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQ 966
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/185 (16%), Positives = 70/185 (37%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A A+F+ M G+ P +++ L+ Y + NV + ++ +M K + + +++
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
G + ++ M ++ Y LI + + + + + + + P
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
D+ + S + S+ K EM++ G P+ T IS + V
Sbjct: 486 DIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYV 545
Query: 238 RTMHK 242
+ M +
Sbjct: 546 KEMRE 550
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 82/203 (40%), Gaps = 21/203 (10%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----------------- 103
V++ M + +K++ +L+ A+ + GNV + V+ + K
Sbjct: 208 VYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKES 267
Query: 104 ----GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
GL P + + +++ ++ + E + +L M+ + D TY++LI+ +G
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327
Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
+ +GL + + + + + S++ + + +F+ MI +G P
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387
Query: 220 LISACSSEDQIEQVTTLVRTMHK 242
LI E + Q L+ M K
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKK 410
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 100/187 (53%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+S A ++F +KR GITP + ++ ++ Y K + +I +M+++G+ P+T ++
Sbjct: 241 YSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYST 300
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+L++Y +F + V M++ + A D++T NI+I++YG+ +++ + LF SL
Sbjct: 301 LLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMD 360
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
++P+VV++ + L Y +L+ + +F M + T +I + E+ T
Sbjct: 361 IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKAT 420
Query: 235 TLVRTMH 241
LV+ M
Sbjct: 421 NLVQEMQ 427
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 108/228 (47%), Gaps = 11/228 (4%)
Query: 41 QHTPNLFVF-------IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
++TP++F + + + F AH +F+EM++ + P ++ L+T++ K G
Sbjct: 150 KYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSA 209
Query: 94 EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
+ +M + + D + ++++ L RL + K + + +++ D+ YN +IN+
Sbjct: 210 LSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINV 269
Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
YG+ + L + + + P+ V++++ L+ Y + L +F EM + C D
Sbjct: 270 YGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALD 329
Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIY---FNLYGE 257
T ++I D +++ L ++ K D++ + Y +YGE
Sbjct: 330 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGE 377
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 96/206 (46%), Gaps = 7/206 (3%)
Query: 43 TPNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
TP+L + + ++Y F +A + +EM G+ P S+ LL+ Y + +
Sbjct: 257 TPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALS 316
Query: 96 VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
V +M + D N M+++YG+L ++ + + ++ K ++ +YN ++ +YG
Sbjct: 317 VFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYG 376
Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
+ LF+ + K ++ +VVT+ + + Y + + + + +EM G P+
Sbjct: 377 EAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAI 436
Query: 216 TAKVLISACSSEDQIEQVTTLVRTMH 241
T +IS ++++ TL + +
Sbjct: 437 TYSTIISIWGKAGKLDRAATLFQKLR 462
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 38/238 (15%)
Query: 44 PNLFVF--IFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
PN+ + I +Y F +A +F M+R I + ++ ++ Y KT K +
Sbjct: 363 PNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNL 422
Query: 97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
+ +M G++P+ +++++++G+ G+ ++ + + D Y +I Y R
Sbjct: 423 VQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYER 482
Query: 157 GGFIEKMEGLFQSLP--------------AKRLKPDVVTWTSRLA--------------- 187
G + + L L AK + + TW R A
Sbjct: 483 VGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCM 542
Query: 188 --AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
YSR + Y +E+FE+M AG +PD ++++A + + E+ T+ R M ++
Sbjct: 543 INLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEE 600
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 89/178 (50%)
Query: 46 LFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL 105
L V++ + F +A +VF EMK + + + +++ Y + V + + + + K +
Sbjct: 302 LSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDI 361
Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
+P+ N++L +YG F + + M++ ++ TYN +I IYG+ EK
Sbjct: 362 EPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 421
Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
L Q + ++ ++P+ +T+++ ++ + + R +F+++ +G D + +I A
Sbjct: 422 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 479
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 85/182 (46%), Gaps = 4/182 (2%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A +F ++++ I P + S+ +L Y + + + M + ++ + N+M+
Sbjct: 348 EADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMI 407
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+YG+ + EK ++ M+ + TY+ +I+I+G+ G +++ LFQ L + ++
Sbjct: 408 KIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVE 467
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
D V + + + AY R L + E+ PD + I+ + + E+ T +
Sbjct: 468 IDQVLYQTMIVAYERVGLMGHAKRLLHEL----KLPDNIPRETAITILAKAGRTEEATWV 523
Query: 237 VR 238
R
Sbjct: 524 FR 525
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 35/219 (15%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A + +EM+ GI P ++ +++ + K G + + + ++ SG++ D + +M+
Sbjct: 419 ATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIV 478
Query: 118 LYGRLGQFEKMEEVL--------------------------------TAMEKGSYAADIS 145
Y R+G + +L A E G DIS
Sbjct: 479 AYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGE-VKDIS 537
Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
+ +IN+Y R + +F+ + PD L AY +++ + + ++ EM
Sbjct: 538 VFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREM 597
Query: 206 IDAGC-YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
+ GC +PD ++L S SS+ E V +L + + D
Sbjct: 598 QEEGCVFPDEVHFQML-SLYSSKKDFEMVESLFQRLESD 635
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLY 119
VFE+M+ G P ++L AY K K + V +M + G + PD V ML+LY
Sbjct: 558 VFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDE-VHFQMLSLY 616
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157
FE +E + +E + ++ +Y R
Sbjct: 617 SSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERA 654
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIE 161
S K I M++L R +++ +L + E+ Y + YN+++ R +
Sbjct: 113 STYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFD 172
Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
GLF + + L PD T+++ + ++ ++ ++ L ++M
Sbjct: 173 IAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKM 216
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 85/185 (45%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
D +F +M R G+ ++ L+ + + + + V QM G+ P+ N++L
Sbjct: 398 DGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLL 457
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ + G+ EK V ++K DI TYNI+ + G +E LF SL K +K
Sbjct: 458 DGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVK 517
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
PDV+ + + ++ + +K L +F +M + G PD GT LI A + L
Sbjct: 518 PDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 577
Query: 237 VRTMH 241
++ M
Sbjct: 578 IKEMR 582
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 92/189 (48%), Gaps = 2/189 (1%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+SDA + +M I P + + L+ A++K G + + E + ++M + + P+ NS
Sbjct: 291 WSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNS 350
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAK 173
++N + + ++ +++ T M D+ TYN LIN + + ++ ME LF+ + +
Sbjct: 351 LINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME-LFRDMSRR 409
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
L + VT+T+ + + + +F++M+ G +P+ T L+ ++E+
Sbjct: 410 GLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 469
Query: 234 TTLVRTMHK 242
+ + K
Sbjct: 470 MVVFEYLQK 478
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 87/190 (45%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+ DA +F EM GI P + ++ L++ G + +++ M + + P+ N
Sbjct: 255 HVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFN 314
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
S+++ + + G+ + E++ M + S +I TYN LIN + +++ + +F + +K
Sbjct: 315 SLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 374
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
PDVVT+ + + + + K +E+F +M G + T LI +
Sbjct: 375 DCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNA 434
Query: 234 TTLVRTMHKD 243
+ + M D
Sbjct: 435 QMVFKQMVSD 444
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 83/185 (44%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A + +M++ I + + ++ + K +V + +M G++PD F +S+++
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLIS 283
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
G++ +L+ M + ++ T+N LI+ + + G + + E LF + + + P
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
++VT+ S + + +IF M+ C PD T LI+ ++ L
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 238 RTMHK 242
R M +
Sbjct: 404 RDMSR 408
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 84/186 (45%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
S+A A+ ++M +G P + L+ + ++ ++ +M G +PD +
Sbjct: 151 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 210
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N + G+ + +L MEKG AD+ Y+ +I+ + ++ LF + K
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
++PDV T++S ++ + + +M++ P+ T LI A + E ++ +
Sbjct: 271 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330
Query: 235 TLVRTM 240
L M
Sbjct: 331 KLFDEM 336
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 84/185 (45%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
S+A A+ E M G P + ++ ++ K G ++N+M K ++ D + +++
Sbjct: 187 SEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTV 246
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
++ + + + T M+ D+ TY+ LI+ G L + +++
Sbjct: 247 IDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI 306
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
P+VVT+ S + A++++ ++F+EMI P+ T LI+ D++++
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 366
Query: 236 LVRTM 240
+ M
Sbjct: 367 IFTLM 371
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 76/193 (39%)
Query: 50 IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
+ + +A +F EM + P++ LL+A +K +M G+ +
Sbjct: 41 LLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNL 100
Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
+ N M+N R Q +L M K Y I T N L+N + G I + L
Sbjct: 101 YTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 160
Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
+ +PD VT+T+ + + + + E M+ GC PD T +I+ +
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220
Query: 230 IEQVTTLVRTMHK 242
+ L+ M K
Sbjct: 221 PDLALNLLNKMEK 233
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/176 (15%), Positives = 75/176 (42%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A +F+EM + I P + ++ L+ + + + + + M PD N+++
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
N + + + E+ M + + TY LI+ + + + + +F+ + + +
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
P+++T+ + L + + + +FE + + PD T ++ ++E
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A VFE +++ + P + ++ ++ K G V + + G+KPD N+M++
Sbjct: 469 AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS 528
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ + G E+ + M++ D TYN LI + R G L + + + R
Sbjct: 529 GFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAG 588
Query: 178 DVVTW 182
D T+
Sbjct: 589 DASTY 593
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
D +F + G+ P + ++ +++ + K G + + +M + G PD+ N+++
Sbjct: 503 DGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLI 562
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG----GFIE 161
+ R G E++ M +A D STY ++ ++ G GF+E
Sbjct: 563 RAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHDGRLDKGFLE 611
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 104/209 (49%), Gaps = 4/209 (1%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F + + + +EM R G P ++ L+ +Y + + + V NQM ++G +PD +
Sbjct: 375 FGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCT 434
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++++ + G + ++ M++ + D TY+++IN G+ G + LF + +
Sbjct: 435 LIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQG 494
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
P++VT+ +A +++ + Y L+++ +M +AG PD T +++ +E+
Sbjct: 495 CTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAE 554
Query: 235 TLVRTMH-KDMKTALPIY---FNLYGEKG 259
+ M K+ P+Y +L+G+ G
Sbjct: 555 GVFAEMQRKNWVPDEPVYGLLVDLWGKAG 583
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 7/190 (3%)
Query: 43 TPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG 95
+P+ F + I + AH +F EM G TP + + +++ ++K N
Sbjct: 461 SPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALK 520
Query: 96 VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
+ M +G +PD + ++ + G G E+ E V M++ ++ D Y +L++++G
Sbjct: 521 LYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWG 580
Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
+ G ++K +Q++ L+P+V T S L+ + R + + M+ G +P
Sbjct: 581 KAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQ 640
Query: 216 TAKVLISACS 225
T +L+S C+
Sbjct: 641 TYTLLLSCCT 650
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 35/222 (15%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
Y +A VF +M+ G P ++ L+ ++K G + + +M ++GL PDTF +
Sbjct: 409 YLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYS 468
Query: 114 SMLNLYGRLGQ-----------------------------------FEKMEEVLTAMEKG 138
++N G+ G +E ++ M+
Sbjct: 469 VIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNA 528
Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
+ D TY+I++ + G GF+E+ EG+F + K PD + + + + +
Sbjct: 529 GFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKA 588
Query: 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+ ++ M+ AG P+ T L+S ++ + L+++M
Sbjct: 589 WQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSM 630
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 62/121 (51%)
Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161
+ G K D +M+ GR QF ++ ++L M + + TYN LI+ YGR +++
Sbjct: 352 QPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLK 411
Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
+ +F + +PD VT+ + + +++ +++++ M +AG PD T V+I
Sbjct: 412 EAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVII 471
Query: 222 S 222
+
Sbjct: 472 N 472
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 3/195 (1%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F A + EM R G+TP++ ++ L+ + K GN+ + ++QM GL P+ +
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ + + G + VL M ++ + TYN LIN + G +E + + + K
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
L PDVV++++ L+ + R L + EM++ G PD T LI + + ++
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505
Query: 235 TLVRTMHKDMKTALP 249
L M ++ LP
Sbjct: 506 DLYEEM---LRVGLP 517
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 99/194 (51%), Gaps = 6/194 (3%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A ++M+ G+ P +++ L+ +S+ G + + V+ +M+ +G P N+++N
Sbjct: 364 AMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN 423
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ G+ E VL M++ + D+ +Y+ +++ + R +++ + + + K +KP
Sbjct: 424 GHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKP 483
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
D +T++S + + ++ + +++EEM+ G PD T LI+A E +E+ L
Sbjct: 484 DTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL- 542
Query: 238 RTMHKDM--KTALP 249
H +M K LP
Sbjct: 543 ---HNEMVEKGVLP 553
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 7/210 (3%)
Query: 41 QHTPNLFV-------FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
Q +PN+F F F+ A +F++M+ G P + ++ L+ Y K +
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 94 EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
++ M GL+P+ N ++N R G+ +++ VLT M + Y+ D TYN LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
Y + G + + + L P V+T+TS + + + R +E ++M G P+
Sbjct: 320 YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPN 379
Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
T L+ S + + + ++R M+ +
Sbjct: 380 ERTYTTLVDGFSQKGYMNEAYRVLREMNDN 409
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 1/182 (0%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
DA AV E+MK G++P + S+ +L+ + ++ +V + V +M + G+KPDT +S++
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ + ++ ++ M + D TY LIN Y G +EK L + K +
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
PDVVT++ + +++ R + ++ P T LI CS+ + + V +L
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSN-IEFKSVVSL 611
Query: 237 VR 238
++
Sbjct: 612 IK 613
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 84/173 (48%), Gaps = 1/173 (0%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
S A VF+EM ++P + ++ +L+ + GN+ + ++M G P+ N+
Sbjct: 186 ISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNT 245
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ Y +L + + ++L +M ++ +YN++IN R G ++++ + + +
Sbjct: 246 LIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG 305
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI-SACSS 226
D VT+ + + Y ++ + + L + EM+ G P T LI S C +
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 92/196 (46%), Gaps = 15/196 (7%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A ++EEM R+G+ P ++ L+ AY G++ K + N+M + G+ PD + ++
Sbjct: 503 EACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLI 562
Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNI--------------LINIYGRGGFIE 161
N + + + + +L + + S +D++ + + LI + G +
Sbjct: 563 NGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMT 622
Query: 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
+ + +F+S+ K KPD + + + R R+ +++EM+ +G T L+
Sbjct: 623 EADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALV 682
Query: 222 SACSSEDQIEQVTTLV 237
A E ++ ++ +++
Sbjct: 683 KALHKEGKVNELNSVI 698
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 76/186 (40%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
D + M G+ P + S+ +++ + G + + V+ +M++ G D N+
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT 315
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++ Y + G F + + M + + TY LI+ + G + + + +
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
L P+ T+T+ + +S+K + EM D G P T LI+ ++E
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 235 TLVRTM 240
++ M
Sbjct: 436 AVLEDM 441
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 5/177 (2%)
Query: 69 GITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127
G P + S+ +L A ++ N++ E V +M +S + P+ F N ++ + G +
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187
+ ME ++ TYN LI+ Y + I+ L +S+ K L+P+++++ +
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
R+ + + EM G D T LI E Q MH +M
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL----VMHAEM 336
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE-IFE 203
S +++++ Y R I+K + A P V+++ + L A R K E +F+
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194
Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
EM+++ P+ T +LI I+ TL M + K LP
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKM--ETKGCLP 238
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
+F EM + G+ ++ L+ + G+ + + +M G+ PD + +L+
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
+ G+ EK V ++K DI TYNI+I + G +E LF SL K +KP+V+
Sbjct: 477 KYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVI 536
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+T+ ++ + RK L +F EM + G P+ GT LI A + L++ M
Sbjct: 537 IYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 596
Query: 241 H 241
Sbjct: 597 R 597
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 84/185 (45%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A ++ ++M++ I + + ++ A NV + +M G++P+ NS++
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 298
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
G++ +L+ M + ++ T++ LI+ + + G + + E L+ + + + P
Sbjct: 299 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 358
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
D+ T++S + + +FE MI C+P+ T LI ++E+ L
Sbjct: 359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418
Query: 238 RTMHK 242
R M +
Sbjct: 419 REMSQ 423
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 92/191 (48%), Gaps = 6/191 (3%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+SDA + +M I P + + L+ A+ K G + + E + ++M K + PD F +S
Sbjct: 306 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 365
Query: 115 MLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
++N ++ RL + + M E++ + + ++ TYN LI + + +E+ LF+ +
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKD---CFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422
Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
+ L + VT+ + + + +IF++M+ G PD T +L+ ++E
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 232 QVTTLVRTMHK 242
+ + + K
Sbjct: 483 KALVVFEYLQK 493
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 87/188 (46%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
+DA +F EM GI P + ++ L+ G + +++ M + + P+ +++
Sbjct: 272 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 331
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
++ + + G+ + E++ M K S DI TY+ LIN + +++ + +F+ + +K
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
P+VVT+ + + + + K +E+F EM G + T LI +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451
Query: 236 LVRTMHKD 243
+ + M D
Sbjct: 452 IFKKMVSD 459
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
S+A A+ ++M + P + L+ ++ +I++M G +PD F +
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 225
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N + G + +L MEKG AD+ Y +I+ + LF + K
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
++P+VVT+ S + + + +MI+ P+ T LI A E ++ +
Sbjct: 286 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 345
Query: 235 TLVRTMHK 242
L M K
Sbjct: 346 KLYDEMIK 353
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/209 (18%), Positives = 91/209 (43%), Gaps = 7/209 (3%)
Query: 39 LLQHTPNLFVF---IFSIYF----SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA 91
++++ PN F I ++ S+A A+ + M G P + ++ ++ K G++
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 237
Query: 92 KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
++ +M K ++ D + ++++ + T M+ ++ TYN LI
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297
Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
G L + +++ P+VVT+++ + A+ ++ ++++EMI
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357
Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTM 240
PD T LI+ D++++ + M
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFELM 386
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 78/193 (40%)
Query: 50 IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
+ + DA +F EM + P++ LL+A +K + +M + D
Sbjct: 56 LLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDL 115
Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
+ N ++N + R Q VL M K Y DI T + L+N Y G I + L
Sbjct: 116 YSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQ 175
Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
+ +P+ VT+ + + + + + M+ GC PD T +++
Sbjct: 176 MFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 235
Query: 230 IEQVTTLVRTMHK 242
I+ +L++ M K
Sbjct: 236 IDLALSLLKKMEK 248
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A A+F EMK G P ++ L+ A + G+ A +I +M G D I+ ++
Sbjct: 553 EADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI 612
Query: 117 NLY--GRL 122
N+ GRL
Sbjct: 613 NMLHDGRL 620
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
+F EM + G+ ++ L+ + + + V QM G+ PD + +L+
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLC 477
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
G+ E V +++ DI TYNI+I + G +E LF SL K +KP+VV
Sbjct: 478 NNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVV 537
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
T+T+ ++ + RK L +F EM + G PD GT LI A + L+R M
Sbjct: 538 TYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597
Query: 241 H 241
Sbjct: 598 R 598
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+SDA + +M I P + + L+ A+ K G + + E + ++M K + PD F +S
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 366
Query: 115 MLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
++N ++ RL + + M E++ + + ++ TYN LI + + +++ LF+ +
Sbjct: 367 LINGFCMHDRLDEAKHMFELMISKD---CFPNVVTYNTLIKGFCKAKRVDEGMELFREMS 423
Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
+ L + VT+T+ + + + + +F++M+ G PD T +L+ + ++E
Sbjct: 424 QRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVE 483
Query: 232 QVTTLVRTMHK 242
+ + +
Sbjct: 484 TALVVFEYLQR 494
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 85/185 (45%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A ++ ++M++ I P + + ++ A NV + +M G++P+ NS++
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
G++ +L+ M + ++ T++ LI+ + + G + + E L+ + + + P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 359
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
D+ T++S + + +FE MI C+P+ T LI ++++ L
Sbjct: 360 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELF 419
Query: 238 RTMHK 242
R M +
Sbjct: 420 REMSQ 424
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 88/188 (46%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
+DA +F EM GI P + ++ L+ G + +++ M + + P+ +++
Sbjct: 273 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 332
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
++ + + G+ + E++ M K S DI TY+ LIN + +++ + +F+ + +K
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 392
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
P+VVT+ + + + + K +E+F EM G + T LI + +
Sbjct: 393 FPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQI 452
Query: 236 LVRTMHKD 243
+ + M D
Sbjct: 453 VFKQMVSD 460
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
S A AV +M +LG P + + LL + ++ ++ QM + G +PD+F N+
Sbjct: 132 LSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNT 191
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ R + + ++ M D+ TY I++N + G I+ L + + +
Sbjct: 192 LIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGK 251
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
++P VV + + + A K L +F EM + G P+ T LI + + +
Sbjct: 252 IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 311
Query: 235 TLVRTM 240
L+ M
Sbjct: 312 RLLSDM 317
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
DA +F +M + P++ LL+A +K + QM G+ + + +
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N + R Q VL M K Y DI T N L+N + G I L +
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
+PD T+ + + R + + + M+ GC PD T ++++ I+
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241
Query: 235 TLVRTMHK 242
+L++ M +
Sbjct: 242 SLLKKMEQ 249
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/185 (18%), Positives = 83/185 (44%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
S+A A+ + M G P + ++ +++ K G++ ++ +M + ++P + N++
Sbjct: 203 SEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTI 262
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
++ + T M+ ++ TYN LI G L + +++
Sbjct: 263 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 322
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
P+VVT+++ + A+ ++ ++++EMI PD T LI+ D++++
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 382
Query: 236 LVRTM 240
+ M
Sbjct: 383 MFELM 387
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 77/187 (41%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
SDA ++ +M +G P + L+ + ++ ++++M G +PD +
Sbjct: 168 SDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIV 227
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
+N + G + +L ME+G + YN +I+ + LF + K +
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
+P+VVT+ S + + + +MI+ P+ T LI A E ++ +
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347
Query: 236 LVRTMHK 242
L M K
Sbjct: 348 LYDEMIK 354
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 1/186 (0%)
Query: 57 DAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
DA +EM + G P + L+ K G+V +++ M + G PD + NS+
Sbjct: 277 DALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV 336
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
++ +LG+ ++ EVL M + + TYN LI+ + +E+ L + L +K +
Sbjct: 337 ISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
PDV T+ S + + +R +E+FEEM GC PD T +LI + S+ ++++
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456
Query: 236 LVRTMH 241
+++ M
Sbjct: 457 MLKQME 462
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A +FEEM+ G P ++ +L+ + G + + ++ QM SG N++++
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ + + + EE+ ME + + TYN LI+ + +E L + + KP
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
D T+ S L + R ++ +I + M GC PD T LIS ++E + L+
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598
Query: 238 RTMH 241
R++
Sbjct: 599 RSIQ 602
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 6/202 (2%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A +F+EM+ G++ ++ L+ K+ V +++QM G KPD + NS+L
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLL 547
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ R G +K +++ AM DI TY LI+ + G +E L +S+ K +
Sbjct: 548 THFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIN 607
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISA-CSSEDQI-EQV 233
+ + RK+ + +F EM++ PD + +++ C+ I E V
Sbjct: 608 LTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAV 667
Query: 234 TTLVRTMHKDMKTALPIYFNLY 255
LV + K +P + +LY
Sbjct: 668 DFLVELLEKGF---VPEFSSLY 686
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 1/187 (0%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVIN 113
F D + E+MK + ++L+ +Y++ + V++ M + GLKPDT N
Sbjct: 99 FDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYN 158
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
MLNL + +E M D+ST+N+LI R + + + +P+
Sbjct: 159 RMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY 218
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
L PD T+T+ + Y + L I E+M++ GC + V++ E ++E
Sbjct: 219 GLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDA 278
Query: 234 TTLVRTM 240
++ M
Sbjct: 279 LNFIQEM 285
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 67/137 (48%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+A + ++M+ G ++ ++ L+ + K + E + ++M G+ ++ N+
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ + + E +++ M D TYN L+ + RGG I+K + Q++ +
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Query: 175 LKPDVVTWTSRLAAYSR 191
+PD+VT+ + ++ +
Sbjct: 571 CEPDIVTYGTLISGLCK 587
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 36/151 (23%)
Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG--------------SYAA----- 142
K P+ + +L GR G F+ M+++L M+ SYA
Sbjct: 76 KPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQD 135
Query: 143 -----------------DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185
D YN ++N+ G ++ +E + +KPDV T+
Sbjct: 136 EILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVL 195
Query: 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
+ A R R + + E+M G PD T
Sbjct: 196 IKALCRAHQLRPAILMLEDMPSYGLVPDEKT 226
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 35/218 (16%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A F + + G P++ + +L+ A S+ G+++ E V M GLK D N++++
Sbjct: 427 AFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMH 486
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK---- 173
YG+ Q K+ E++ M + D++TYNILI+ G+I++ + L +
Sbjct: 487 GYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVP 546
Query: 174 -------------------------------RLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
R+KPDVVT ++ L Y + + + + +F
Sbjct: 547 STLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLF 606
Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+++DAG PD LI S IE+ L+ M
Sbjct: 607 NKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLM 644
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 70 ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
+ P + + L+ TG++ + + ++ + GL PD +M++ Y LG+ +K
Sbjct: 369 LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAF 428
Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
+ A+ K ++T ILI R G I E +F+++ + LK DVVT+ + + Y
Sbjct: 429 QYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGY 488
Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+ + E+ +EM AG PD T +LI + I++ ++ +
Sbjct: 489 GKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISEL 539
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 74/161 (45%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
+ +EM+ GI+P + ++ +L+ + G + + +I+++ + G P T ++ +
Sbjct: 500 LIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFS 559
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
+ G F++ + M D+ T + L++ Y + +EK LF L LKPDVV
Sbjct: 560 KRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVV 619
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
+ + + Y + E+ M+ G P+ T L+
Sbjct: 620 LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 11/178 (6%)
Query: 44 PNLFVFIFSIYFSD---------AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
PN+FV+ S + S+ A +F+E+ LG+ P + ++ Y G K
Sbjct: 371 PNIFVY--SSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAF 428
Query: 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
+ KSG P ++ R G E V M+ D+ TYN L++ Y
Sbjct: 429 QYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGY 488
Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
G+ + K+ L + + + PDV T+ + + + EI E+I G P
Sbjct: 489 GKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVP 546
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 89/202 (44%), Gaps = 4/202 (1%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
YF + MK GI P + + + + K G + + V+ ++ G+ D+ ++
Sbjct: 286 YFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVS 345
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
S+++ + ++G K EE + + +I Y+ ++ G + + +FQ +
Sbjct: 346 SVIDGFCKVG---KPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFEL 402
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
L PD V +T+ + Y + + F ++ +G P T+ +LI ACS I
Sbjct: 403 GLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDA 462
Query: 234 TTLVRTMHKD-MKTALPIYFNL 254
++ R M + +K + Y NL
Sbjct: 463 ESVFRNMKTEGLKLDVVTYNNL 484
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F +A ++ M L + P + + LL Y K + K + N++ +GLKPD + N+
Sbjct: 564 FQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNT 623
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
+++ Y +G EK E++ M + + ST++ L+
Sbjct: 624 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALV 660
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 32/182 (17%)
Query: 64 EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
++ + GI P+ + LL + + + M G + V++ + Y G
Sbjct: 226 KVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDG 285
Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE---------KMEGLFQS----- 169
F+K E+L M+ DI + + I+ + GF++ K+ G+ Q
Sbjct: 286 YFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVS 345
Query: 170 ------------------LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
+ + RL+P++ ++S L+ R IF+E+ + G
Sbjct: 346 SVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLL 405
Query: 212 PD 213
PD
Sbjct: 406 PD 407
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 92/186 (49%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A +F +K +G+ P ++ +++ YSK G + + ++++M ++G +PD V+NS++
Sbjct: 486 EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLI 545
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
N + + ++ ++ M++ + TYN L+ G+ G I++ LF+ + K
Sbjct: 546 NTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCP 605
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
P+ +T+ + + L++ +M+D GC PD T +I Q+++
Sbjct: 606 PNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCF 665
Query: 237 VRTMHK 242
M K
Sbjct: 666 FHQMKK 671
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A FE+MK GI P + + L + +K G + + + + GL PD+ N M+
Sbjct: 452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 511
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
Y ++G+ ++ ++L+ M + D+ N LIN + +++ +F + +LKP
Sbjct: 512 CYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230
VVT+ + LA + + +E+FE M+ GC P+ T L D++
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEV 624
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 96/203 (47%), Gaps = 3/203 (1%)
Query: 37 FLLLQHTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
F+L ++ N + + S + ++A V+ M G P+++++ L+ K ++
Sbjct: 184 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVM 243
Query: 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
G++ +M GLKP+ + + + GR G+ + E+L M+ D+ TY +LI+
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303
Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
++ + +F+ + R KPD VT+ + L +S + + + EM G PD
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDV 363
Query: 215 GTAKVLISA-CSSEDQIEQVTTL 236
T +L+ A C + + E TL
Sbjct: 364 VTFTILVDALCKAGNFGEAFDTL 386
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 7/198 (3%)
Query: 56 SDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
S A +FE+ K LG+ P + ++ LL+ + + + V Q+ +G PD N
Sbjct: 766 SGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNF 825
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+L+ YG+ G+ +++ E+ M A+ T+NI+I+ + G ++ L+ L + R
Sbjct: 826 LLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDR 885
Query: 175 -LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
P T+ + S+ ++FE M+D GC P+ +LI+ + +
Sbjct: 886 DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAA 945
Query: 234 TTLVRTMHK-----DMKT 246
L + M K D+KT
Sbjct: 946 CALFKRMVKEGVRPDLKT 963
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 7/167 (4%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A A+F+ M + G+ P +K++ +L+ G V + ++ +SGL PD N ++N
Sbjct: 945 ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIIN 1004
Query: 118 LYGRLGQFEKMEEVLTAMEK----GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
LG+ ++EE L + D+ TYN LI G G +E+ ++ +
Sbjct: 1005 ---GLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
L+P+V T+ + + YS +++ M+ G P+ GT + L
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 93/210 (44%), Gaps = 7/210 (3%)
Query: 41 QHTPNLFVFIFSI-YFSDAHAV------FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC 93
+H P+ +I + FSD + + EM++ G P + + +L+ A K GN +
Sbjct: 323 RHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEA 382
Query: 94 EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
++ M G+ P+ N+++ R+ + + E+ ME TY + I+
Sbjct: 383 FDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDY 442
Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
YG+ G F+ + K + P++V + L + ++ R +IF + D G PD
Sbjct: 443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502
Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
T +++ S +I++ L+ M ++
Sbjct: 503 SVTYNMMMKCYSKVGEIDEAIKLLSEMMEN 532
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 8/211 (3%)
Query: 42 HTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
H P++ F + F +A + M+ GI P + ++ L+ + +
Sbjct: 359 HVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDAL 418
Query: 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
+ M G+KP + ++ YG+ G E M+ A +I N +
Sbjct: 419 ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSL 478
Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
+ G + + +F L L PD VT+ + YS+ +++ EM++ GC PD
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538
Query: 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
LI+ D++++ + M K+MK
Sbjct: 539 IVVNSLINTLYKADRVDEAWKMFMRM-KEMK 568
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 1/185 (0%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A +FE M G P + +L+ + K G + +M K G++PD + ++
Sbjct: 909 EAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLV 968
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-L 175
+ +G+ ++ +++ D+ YN++IN G+ +E+ LF + R +
Sbjct: 969 DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGI 1028
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
PD+ T+ S + + +I+ E+ AG P+ T LI S + E
Sbjct: 1029 TPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYA 1088
Query: 236 LVRTM 240
+ +TM
Sbjct: 1089 VYQTM 1093
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/213 (18%), Positives = 87/213 (40%), Gaps = 4/213 (1%)
Query: 60 AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
+ +EM+ LG+ P + + + + + G + + ++ +M G PD +++
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
+ + +EV M+ G + D TY L++ + ++ ++ + + PDV
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDV 363
Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
VT+T + A + + + + M D G P+ T LI +++ L
Sbjct: 364 VTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGN 423
Query: 240 MH----KDMKTALPIYFNLYGEKGVARSNLGQY 268
M K ++ + YG+ G + S L +
Sbjct: 424 MESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 456
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Query: 62 FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
++ M +PT ++ L+ SK+G + + + + M G +P+ + N ++N +G+
Sbjct: 879 YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGK 938
Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
G+ + + M K D+ TY++L++ G +++ F+ L L PDVV
Sbjct: 939 AGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVC 998
Query: 182 WTSRLAAYSRKKLYRRCLEIFEEM-IDAGCYPDGGTAKVLI 221
+ + + L +F EM G PD T LI
Sbjct: 999 YNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 77/171 (45%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
VF+ M++ I +++ + + S G + + + +M + G + + N +++L
Sbjct: 140 VFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLL 199
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
+ + EV M + + TY+ L+ G+ I+ + GL + + LKP+V
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
T+T + R EI + M D GC PD T VLI A + +++
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLD 310
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 76/186 (40%), Gaps = 7/186 (3%)
Query: 44 PNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
PN++ F I ++A+ + + M G P + ++ +L+ A + + V
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 315
Query: 97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
+M KPD ++L+ + + +++ + MEK + D+ T+ IL++ +
Sbjct: 316 FEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375
Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
G + + + + P++ T+ + + R LE+F M G P T
Sbjct: 376 AGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYT 435
Query: 217 AKVLIS 222
V I
Sbjct: 436 YIVFID 441
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 55 FSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+A +F EMK GITP + ++ L+ G V + + N++ ++GL+P+ F N
Sbjct: 1012 LEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFN 1071
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
+++ Y G+ E V M G ++ + TY L N
Sbjct: 1072 ALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 86/168 (51%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
D F++M G PT+ ++ +++ K G+V G+ +M GL PDT NSM
Sbjct: 244 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 303
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
++ +G++G+ + M+ D+ TYN LIN + + G + ++ + L
Sbjct: 304 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 363
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
KP+VV++++ + A+ ++ + ++ ++ + +M G P+ T LI A
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 79/188 (42%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+A F +MKR + P +S LL ++K G + M +G +P F N
Sbjct: 208 LEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNI 267
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
M++ + G E + M+ D TYN +I+ +G+ G ++ F+ +
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
+PDV+T+ + + + + LE + EM G P+ + L+ A E ++Q
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 235 TLVRTMHK 242
M +
Sbjct: 388 KFYVDMRR 395
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 1/185 (0%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A +F +M G+ P + S+ L+ + K N+ + ++N++ G+KPD + + +
Sbjct: 455 EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 514
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
L + E + V+ M++ A+ Y L++ Y + G + L + ++
Sbjct: 515 WGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIE 574
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQVTT 235
VVT+ + + KL + ++ F + D G + +I ++Q+E TT
Sbjct: 575 VTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATT 634
Query: 236 LVRTM 240
L M
Sbjct: 635 LFEQM 639
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 79/181 (43%)
Query: 62 FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
+ EMK G+ P + S+ L+ A+ K G + + M + GL P+ + S+++ +
Sbjct: 355 YREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCK 414
Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
+G + M + ++ TY LI+ +++ E LF + + P++ +
Sbjct: 415 IGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS 474
Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
+ + + + + K R LE+ E+ G PD I S ++IE ++ M
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 534
Query: 242 K 242
+
Sbjct: 535 E 535
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/183 (19%), Positives = 77/183 (42%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A +FEEMK G+ P ++ ++ + K G + +M +PD N+++N
Sbjct: 281 ARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 340
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ + G+ E M+ ++ +Y+ L++ + + G +++ + + L P
Sbjct: 341 CFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVP 400
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+ T+TS + A + + EM+ G + T LI +++++ L
Sbjct: 401 NEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELF 460
Query: 238 RTM 240
M
Sbjct: 461 GKM 463
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 1/154 (0%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLY 119
+ +EMK L I T+ + +L+ K V+K N++ GL+ + + +M++
Sbjct: 564 LLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGL 623
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
+ Q E + M + D + Y L++ + G + + L + +K D+
Sbjct: 624 CKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDL 683
Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
+ +TS + S ++ EEMI G +PD
Sbjct: 684 LAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 717
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/184 (18%), Positives = 75/184 (40%), Gaps = 1/184 (0%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A V EMK GI + L+ AY K+GN + ++++M + ++ +++
Sbjct: 526 AKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLID 585
Query: 118 LYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ K + + A+ + + +I+ + +E LF+ + K L
Sbjct: 586 GLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLV 645
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
PD +TS + ++ L + ++M + G D L+ S +Q+++ +
Sbjct: 646 PDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSF 705
Query: 237 VRTM 240
+ M
Sbjct: 706 LEEM 709
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A +FE+M + G+ P ++ L+ K GNV + + ++M + G+K D S++
Sbjct: 632 ATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVW 691
Query: 118 LYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKME 164
Q +K L M +G + ++ ++L Y G E +E
Sbjct: 692 GLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVE 739
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 1/138 (0%)
Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
P V +++ ++ LG E+ + + M++ + N L++ + + G + ++
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249
Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226
F+ + +P V T+ + ++ +FEEM G PD T +I
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309
Query: 227 EDQIEQVTTLVRTMHKDM 244
+++ M KDM
Sbjct: 310 VGRLDDTVCFFEEM-KDM 326
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 90/183 (49%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A+ + EM ++G+ P + ++ ++ K+GN+ + ++ + +GL DT ++++
Sbjct: 475 ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
Y + G+ +K +E+L M I T+N+L+N + G +E E L + AK + P
Sbjct: 535 AYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 594
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+ T+ S + Y + + I+++M G PDG T + L+ +++ L
Sbjct: 595 NATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 654
Query: 238 RTM 240
+ M
Sbjct: 655 QEM 657
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+AH + M+ G TP + S+ ++ Y + G + K +I M + GLKP++++ S++
Sbjct: 264 EAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSII 323
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
L R+ + + EE + M + D Y LI+ + + G I F + ++ +
Sbjct: 324 GLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDIT 383
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
PDV+T+T+ ++ + + ++F EM G PD T LI+
Sbjct: 384 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELING 430
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 7/220 (3%)
Query: 30 SHFMLINFLLLQHTPNLFVFIFSI----YFSDAHAVF---EEMKRLGITPTMKSHMLLLT 82
+H +L+ L +TP++ + + F + V+ E MKR G+ P + ++
Sbjct: 265 AHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIG 324
Query: 83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
+ +A+ E ++M + G+ PDT V ++++ + + G + M
Sbjct: 325 LLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITP 384
Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
D+ TY +I+ + + G + + LF + K L+PD VT+T + Y + + +
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 444
Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
MI AGC P+ T LI E ++ L+ M K
Sbjct: 445 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 88/187 (47%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+ DA V M + G +P + ++ L+ K G++ ++++M K GL+P+ F N
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
S++N + G E+ +++ E AD TY L++ Y + G ++K + + + + K
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 555
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
L+P +VT+ + + + ++ M+ G P+ T L+ + ++
Sbjct: 556 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615
Query: 234 TTLVRTM 240
T + + M
Sbjct: 616 TAIYKDM 622
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 90/209 (43%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A +F EM G+ P + L+ Y K G++ V N M ++G P+ +++
Sbjct: 404 EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLI 463
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ + G + E+L M K +I TYN ++N + G IE+ L A L
Sbjct: 464 DGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN 523
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
D VT+T+ + AY + + EI +EM+ G P T VL++ +E L
Sbjct: 524 ADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKL 583
Query: 237 VRTMHKDMKTALPIYFNLYGEKGVARSNL 265
+ M FN ++ R+NL
Sbjct: 584 LNWMLAKGIAPNATTFNSLVKQYCIRNNL 612
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 15/246 (6%)
Query: 10 DLCVAQRAPHS-WNFNYLPYPSHFMLINFLLLQHT-------PNLFVFIFSIY-----FS 56
DL VAQ S W L F+ F LL +T P +F F +
Sbjct: 134 DLKVAQSLISSFWERPKLNVTDSFVQF-FDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLR 192
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSM 115
+A VFE+M G+ ++ S + LT SK A V + + G+ + N +
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
++ +LG+ ++ +L ME Y D+ +Y+ ++N Y R G ++K+ L + + K L
Sbjct: 253 IHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGL 312
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
KP+ + S + R E F EMI G PD LI I +
Sbjct: 313 KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 372
Query: 236 LVRTMH 241
MH
Sbjct: 373 FFYEMH 378
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 76/183 (41%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
++A F EM R GI P + L+ + K G++ +MH + PD +
Sbjct: 332 LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 391
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ + ++G + ++ M D T+ LIN Y + G ++ + +
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
P+VVT+T+ + ++ E+ EM G P+ T +++ IE+
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 235 TLV 237
LV
Sbjct: 512 KLV 514
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A VF E +G+ + S+ +++ + G + + ++ M G PD ++++N
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 289
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
Y R G+ +K+ +++ M++ + Y +I + R + + E F + + + P
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
D V +T+ + + ++ R + F EM PD T +IS C D +E
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 404
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 88/201 (43%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A + E + G+ ++ L+ AY K+G + K + ++ +M GL+P N ++
Sbjct: 509 EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLM 568
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
N + G E E++L M A + +T+N L+ Y ++ +++ + ++ +
Sbjct: 569 NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVG 628
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
PD T+ + + + + + + +F+EM G T VLI + + +
Sbjct: 629 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 688
Query: 237 VRTMHKDMKTALPIYFNLYGE 257
M ++ A F+ + +
Sbjct: 689 FDQMRREGLAADKEIFDFFSD 709
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
VF EM + G+ ++ L+ + + + + V QM G+ PD N +L+
Sbjct: 378 VFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLC 437
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
G E V M+K DI TY +I + G +E LF SL K +KP+VV
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVV 497
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
T+T+ ++ + RK L +F EM + G P+ GT LI A
Sbjct: 498 TYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRA 540
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 81/188 (43%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
S+A A+ ++M +G P + L+ + ++ ++ +M G +PD +
Sbjct: 161 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 220
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N + G+ + +L MEKG AD+ YN +I+ + ++ LF + K
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 280
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
+KPDV T+ ++ + + +M++ PD LI A E ++ +
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340
Query: 235 TLVRTMHK 242
L M K
Sbjct: 341 KLYDEMVK 348
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 80/202 (39%)
Query: 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
+ DA +F +M + P++ LL+A +K + QM G+ + +
Sbjct: 53 DLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYT 112
Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
+ +N + R Q +L M K Y I T N L+N + G I + L +
Sbjct: 113 YSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 172
Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
+PD VT+T+ + + + + E M+ GC PD T +I+ + +
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 232
Query: 232 QVTTLVRTMHKDMKTALPIYFN 253
L+ M K A + +N
Sbjct: 233 LALNLLNKMEKGKIEADVVIYN 254
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 1/179 (0%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVIN 113
+SDA + +M I P + L+ A+ K G + + E + ++M KS PD N
Sbjct: 301 WSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYN 360
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
+++ + + + E+ EV M + + TY LI+ + + + + +F+ + +
Sbjct: 361 TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSD 420
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
+ PD++T+ L L +FE M D T +I A ++E
Sbjct: 421 GVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVED 479
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 1/188 (0%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
DA V E M+ ++P +++ L+ Y K+ NV K GV+N+M + + PD NS
Sbjct: 409 IEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNS 467
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ R G F+ +L+ M D TY +I+ + +E+ LF SL K
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKG 527
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
+ P+VV +T+ + Y + + E+M+ C P+ T LI ++ ++++ T
Sbjct: 528 VNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEAT 587
Query: 235 TLVRTMHK 242
L M K
Sbjct: 588 LLEEKMVK 595
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 84/169 (49%), Gaps = 1/169 (0%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+A +F +MK PT++++ +L+ + + ++ ++ +M ++G+KP+
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ +FEK E+L M + ++ TYN LIN Y + G IE + + + +++
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
L P+ T+ + Y + ++ + + + +M++ PD T LI
Sbjct: 424 LSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVLPDVVTYNSLIDG 471
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 2/164 (1%)
Query: 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
LL + ++ G V + + V +M + + P+ + N M+N Y +LG E+ + ++ + +
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG 248
Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
D TY LI Y + ++ +F +P K + + V +T + + +
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAM 308
Query: 200 EIFEEMIDAGCYPDGGTAKVLI-SACSSEDQIEQVTTLVRTMHK 242
++F +M D C+P T VLI S C SE + E + LV+ M +
Sbjct: 309 DLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEAL-NLVKEMEE 351
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 86/217 (39%), Gaps = 25/217 (11%)
Query: 30 SHFMLINFLLLQHTPNLFVFIFSIY-------FSDAHAVFEEMKRLGITPTMKSHMLLLT 82
+H ML L PN F I+ +A + E+M ++G+ PT+ + +L+
Sbjct: 551 AHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIH 610
Query: 83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA 142
K G+ QM SG KPD + + Y R G+ E+++ M + +
Sbjct: 611 RLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSP 670
Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS------------------ 184
D+ TY+ LI YG G + + + +P T+ S
Sbjct: 671 DLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEP 730
Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
L A S + +E+ E+M++ P+ + + LI
Sbjct: 731 ELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%)
Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
N++LN R G ++M++V M + +I TYN ++N Y + G +E+ +
Sbjct: 187 NTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVE 246
Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
L PD T+TS + Y ++K ++F EM GC + LI +I++
Sbjct: 247 AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE 306
Query: 233 VTTLVRTMHKD 243
L M D
Sbjct: 307 AMDLFVKMKDD 317
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 75/167 (44%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A +F+ +++ G+ P + + L+ Y K G V + ++ +M P++ N+++
Sbjct: 515 EACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALI 574
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ G+ ++ + M K +ST ILI+ + G + FQ + + K
Sbjct: 575 HGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTK 634
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
PD T+T+ + Y R+ ++ +M + G PD T LI
Sbjct: 635 PDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKG 681
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 2/181 (1%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
V+ EM + P + ++ ++ Y K GNV + ++++ ++GL PD F S++ Y
Sbjct: 205 VYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYC 264
Query: 121 RLGQFEKMEEVLTAME-KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
+ + +V M KG +++ Y LI+ I++ LF + P V
Sbjct: 265 QRKDLDSAFKVFNEMPLKGCRRNEVA-YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTV 323
Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
T+T + + + L + +EM + G P+ T VLI + S+ + E+ L+
Sbjct: 324 RTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQ 383
Query: 240 M 240
M
Sbjct: 384 M 384
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 75/164 (45%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A V +M + P + ++ L+ ++GN +++ M+ GL PD + SM++
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMID 505
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ + E+ ++ ++E+ ++ Y LI+ Y + G +++ + + + +K P
Sbjct: 506 SLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLP 565
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
+ +T+ + + + + E+M+ G P T +LI
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILI 609
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 1/181 (0%)
Query: 44 PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103
P L + F + E+M +TP KS+ L+ + GN+ E V + M ++
Sbjct: 730 PELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRN 789
Query: 104 -GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162
G+ P V N++L+ +L + + +V+ M + + + +LI + G E+
Sbjct: 790 EGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKER 849
Query: 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222
+FQ+L D + W + ++ L E+F M GC T +LI
Sbjct: 850 GTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909
Query: 223 A 223
Sbjct: 910 G 910
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 8/170 (4%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP----DTFV 111
+AH + E+M P + L+ G + + + +M K GL+P DT +
Sbjct: 549 DEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTIL 608
Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
I+ +L + G F+ M D TY I Y R G + E + +
Sbjct: 609 IHRLL----KDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR 664
Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
+ PD+ T++S + Y ++ + M D GC P T LI
Sbjct: 665 ENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI 714
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/267 (17%), Positives = 102/267 (38%), Gaps = 58/267 (21%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F A++ F++M G P ++ + Y + G + E ++ +M ++G+ PD F +S
Sbjct: 618 FDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSS 677
Query: 115 MLNLYGRLGQ-------------------------------------------------- 124
++ YG LGQ
Sbjct: 678 LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSN 737
Query: 125 ---FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVV 180
F+ + E+L M + S + +Y LI G + E +F + + P +
Sbjct: 738 MMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSEL 797
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+ + L+ + K + ++ ++MI G P + KVLI + + E+ T++ + +
Sbjct: 798 VFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNL 857
Query: 241 ----HKDMKTALPIYFNLYGEKGVARS 263
+ + + A I + G++G+ +
Sbjct: 858 LQCGYYEDELAWKIIIDGVGKQGLVEA 884
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/189 (17%), Positives = 82/189 (43%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F A+ + M G+ P ++ ++ + K+ V + + + + + G+ P+ + +
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ Y + G+ ++ +L M + + T+N LI+ G +++ L + +
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
L+P V T T + + + F++M+ +G PD T I E ++
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAE 657
Query: 235 TLVRTMHKD 243
++ M ++
Sbjct: 658 DMMAKMREN 666
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
Y I YN L+N R G +++M+ ++ + ++ P++ T+ + Y +
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEAN 238
Query: 200 EIFEEMIDAGCYPDGGTAKVLISA-CSSED 228
+ ++++AG PD T LI C +D
Sbjct: 239 QYVSKIVEAGLDPDFFTYTSLIMGYCQRKD 268
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 92/178 (51%), Gaps = 8/178 (4%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
Y +A +F+E+ + S +++ Y++TGN + + M K+ ++PD +
Sbjct: 215 YIENAQKLFDEIPVKDVV----SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 270
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
++++ + G E +V ++ + +++ N LI++Y + G +E GLF+ LP K
Sbjct: 271 TVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK 330
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
DV++W + + Y+ LY+ L +F+EM+ +G P+ T ++ AC+ I+
Sbjct: 331 ----DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 384
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 8/167 (4%)
Query: 65 MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124
M LG+ P + +L + +K+ + + + + K G D +V S++++Y + G+
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184
Query: 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
E +V S D+ +Y LI Y G+IE + LF +P K DVV+W +
Sbjct: 185 LEDAHKVFDK----SPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK----DVVSWNA 236
Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
++ Y+ Y+ LE+F++M+ PD T ++SAC+ IE
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 283
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Query: 96 VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG----SYAADISTYNILI 151
+ +M +SG P+ + S+L LG + + ++K + A+ + T LI
Sbjct: 354 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LI 411
Query: 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211
++Y + G IE +F S+ K L +W + + ++ ++F M G
Sbjct: 412 DMYAKCGDIEAAHQVFNSILHKSLS----SWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467
Query: 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245
PD T L+SACS ++ + RTM +D K
Sbjct: 468 PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYK 501
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG--NVAKCEGVINQMHKSGLKPDTFVI 112
+ +A +F+EM R G TP + + +L A + G ++ + V G+ + +
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 407
Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
S++++Y + G E +V ++ S +S++N +I + G + LF +
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKS----LSSWNAMIFGFAMHGRADASFDLFSRMRK 463
Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205
++PD +T+ L+A S + IF M
Sbjct: 464 IGIQPDDITFVGLLSACSHSGMLDLGRHIFRTM 496
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
VF EM + G+ ++ +L+ + G+ + + +M G+ P+ N++L+
Sbjct: 418 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
+ G+ EK V +++ I TYNI+I + G +E LF +L K +KPDVV
Sbjct: 478 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVV 537
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+ + ++ + RK +F+EM + G P+ G LI A + E L++ M
Sbjct: 538 AYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597
Query: 241 H 241
Sbjct: 598 R 598
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 91/190 (47%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+ DA +F+EM+ GI P + ++ L++ G + +++ M + + PD F +
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
++++ + + G+ + E++ M K S I TY+ LIN + +++ + +F+ + +K
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
PDVVT+ + + + + K +E+F EM G + T +LI +
Sbjct: 391 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 450
Query: 234 TTLVRTMHKD 243
+ + M D
Sbjct: 451 QEIFKEMVSD 460
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/197 (17%), Positives = 89/197 (45%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A + +M++ + P + + ++ K ++ + +M G++P+ +S+++
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
G++ +L+ M + D+ T++ LI+ + + G + + E L+ + + + P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+VT++S + + ++FE M+ C+PD T LI ++E+ +
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419
Query: 238 RTMHKDMKTALPIYFNL 254
R M + + +N+
Sbjct: 420 REMSQRGLVGNTVTYNI 436
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/185 (18%), Positives = 83/185 (44%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
S+A A+ + M G P + ++ +++ K G+ ++N+M + L+P + N++
Sbjct: 203 SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTI 262
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
++ + + + ME ++ TY+ LI+ G L + +++
Sbjct: 263 IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 322
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
PDV T+++ + A+ ++ ++++EM+ P T LI+ D++++
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 382
Query: 236 LVRTM 240
+ M
Sbjct: 383 MFEFM 387
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 35/220 (15%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A AV +M +LG P + + LL Y + +++ +++QM +G +P+T N++++
Sbjct: 135 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 194
Query: 118 ----------------------------LYG-------RLGQFEKMEEVLTAMEKGSYAA 142
YG + G + +L ME+G
Sbjct: 195 GLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEP 254
Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202
+ YN +I+ + ++ LF+ + K ++P+VVT++S ++ + +
Sbjct: 255 GVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLL 314
Query: 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
+MI+ PD T LI A E ++ + L M K
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 75/188 (39%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
DA A+F EM + P++ LL+A +K + QM G+ + + +
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N + R Q VL M K Y +I T + L+N Y I + L +
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
+P+ VT+ + + + + + M+ GC PD T V+++ +
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 235 TLVRTMHK 242
L+ M +
Sbjct: 242 NLLNKMEQ 249
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/203 (17%), Positives = 86/203 (42%), Gaps = 9/203 (4%)
Query: 39 LLQHTPNLFVFIFSIYFS---------DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
+++ N VF FS +A +++EM + I P++ ++ L+ +
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 90 VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
+ + + + M PD N+++ + + + E+ EV M + + TYNI
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
LI + G + + +F+ + + + P+++T+ + L + + + +FE + +
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 210 CYPDGGTAKVLISACSSEDQIEQ 232
P T ++I ++E
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVED 519
>sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400
OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1
Length = 610
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 93 CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
C V + M + G+ P+T+ N + N++ F ++++ L ME+ + D+ TYN L++
Sbjct: 220 CWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVS 279
Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
Y R G +++ L++ + +R+ PD+VT+TS + + R + F M+D G P
Sbjct: 280 SYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKP 339
Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTM 240
D + LI A E ++Q L+ M
Sbjct: 340 DCMSYNTLIYAYCKEGMMQQSKKLLHEM 367
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 89/193 (46%), Gaps = 1/193 (0%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
D V+ M R+GI P + +L + N + + + +M + G +PD N+++
Sbjct: 219 DCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLV 278
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ Y R G+ ++ + M + D+ TY LI + G + + F + + +K
Sbjct: 279 SSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIK 338
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
PD +++ + + AY ++ + ++ ++ EM+ PD T KV++ E ++
Sbjct: 339 PDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNF 398
Query: 237 VRTMHKDMKTALP 249
V + + +K +P
Sbjct: 399 VVELRR-LKVDIP 410
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/145 (19%), Positives = 61/145 (42%)
Query: 48 VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
VF F + E+M+ G P + ++ L+++Y + G + + + M++ + P
Sbjct: 245 VFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVP 304
Query: 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167
D S++ + G+ + + M D +YN LI Y + G +++ + L
Sbjct: 305 DLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLL 364
Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRK 192
+ + PD T + + R+
Sbjct: 365 HEMLGNSVVPDRFTCKVIVEGFVRE 389
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA 134
K++ L+ + G + E ++ +M S +KPD+F+ +++ Y + F+K E +L+
Sbjct: 483 KTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICGALVYGYCKELDFDKAERLLSL 542
Query: 135 MEKGSYAADISTYNILINIYGRGG 158
D +YN L+ G
Sbjct: 543 FAMEFRIFDPESYNSLVKAVCETG 566
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%)
Query: 49 FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
F S D +F EM G+ ++ L+ G+ + V QM G+ PD
Sbjct: 335 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 394
Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
+ +L+ G+ EK EV M+K DI Y +I + G ++ LF
Sbjct: 395 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 454
Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
SL K +KP+VVT+ + ++ K+L + + ++M + G PD GT LI A +
Sbjct: 455 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 514
Query: 229 QIEQVTTLVRTMH 241
L+R M
Sbjct: 515 DKAASAELIREMR 527
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 90/190 (47%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+ DA +F+EM+ GI P + ++ L++ G + +++ M + + P+ N
Sbjct: 200 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 259
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
++++ + + G+F + E++ M K S DI TYN LIN + ++K + +F+ + +K
Sbjct: 260 ALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK 319
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
PD+ T+ + + + + K E+F EM G D T LI + +
Sbjct: 320 DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 379
Query: 234 TTLVRTMHKD 243
+ + M D
Sbjct: 380 QKVFKQMVSD 389
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/220 (19%), Positives = 93/220 (42%), Gaps = 35/220 (15%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
S+A A+ + M + G P + ++ +++ K G++ ++N+M + ++ D + N++
Sbjct: 132 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 191
Query: 116 -------------LNLYGRL----------------------GQFEKMEEVLTAMEKGSY 140
LNL+ + G++ ++L+ M +
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 251
Query: 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200
++ T+N LI+ + + G + E L + + + PD+ T+ S + + + +
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 311
Query: 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+FE M+ C+PD T LI ++E T L R M
Sbjct: 312 MFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREM 351
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 84/190 (44%), Gaps = 4/190 (2%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
SDA A+ ++M +G P + L+ ++ ++++M + G +P+
Sbjct: 96 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 155
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N + G + +L ME AD+ +N +I+ + ++ LF+ + K
Sbjct: 156 VVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 215
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
++P+VVT++S ++ + ++ +MI+ P+ T LI A E + +
Sbjct: 216 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 275
Query: 235 TLVRTMHKDM 244
L H DM
Sbjct: 276 KL----HDDM 281
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 2/184 (1%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A A+ +M +LG P++ + LL Y ++ +++QM + G +PDT ++++
Sbjct: 64 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 123
Query: 118 -LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
L+ E + V +++G ++ TY +++N + G I+ L + A +++
Sbjct: 124 GLFLHNKASEAVALVDRMVQRGC-QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 182
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
DVV + + + + + + L +F+EM G P+ T LIS S + + L
Sbjct: 183 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 242
Query: 237 VRTM 240
+ M
Sbjct: 243 LSDM 246
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 35/186 (18%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+SDA + +M I P + + L+ A+ K G + E + + M K + PD F NS
Sbjct: 236 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNS 295
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK------------ 162
++N + + +K +++ M D+ TYN LI + + +E
Sbjct: 296 LINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG 355
Query: 163 -----------MEGLF------------QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
++GLF + + + + PD++T++ L + L
Sbjct: 356 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 415
Query: 200 EIFEEM 205
E+F+ M
Sbjct: 416 EVFDYM 421
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%)
Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
M KS P F N +L+ ++ +F+ + + M++ + ++ TYNILIN + R
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
I L + +P +VT +S L Y K + + ++M++ G PD T
Sbjct: 61 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120
Query: 220 LISACSSEDQIEQVTTLVRTM 240
LI ++ + LV M
Sbjct: 121 LIHGLFLHNKASEAVALVDRM 141
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%)
Query: 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
LL+A +K + +M + G+ + + N ++N + R Q +L M K
Sbjct: 16 LLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLG 75
Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
Y I T + L+N Y G I L + +PD +T+T+ + +
Sbjct: 76 YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 135
Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253
+ + M+ GC P+ T V+++ I+ L+ M A + FN
Sbjct: 136 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 38/188 (20%)
Query: 42 HTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
HT ++ + F+ F + +M+R GI P ++ L+ AY K + E + Q
Sbjct: 222 HTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQ 281
Query: 100 M------------------------------------HKSGLKPDTFVINSMLNLYGRLG 123
M SG++P+ N +L+ YG+ G
Sbjct: 282 MLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSG 341
Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
++KM V+ M+K Y+ I TYN++I+ +GR G +++ME LF+ + ++R+ P VT
Sbjct: 342 NYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLC 401
Query: 184 SRLAAYSR 191
S + AY R
Sbjct: 402 SLVRAYGR 409
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 4/180 (2%)
Query: 62 FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
+E+ + GI P +++ +LL +Y K+GN K V+ M K N +++ +GR
Sbjct: 315 YEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGR 374
Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
G ++ME + M+ T L+ YGR +K+ G+ + + ++ D+V
Sbjct: 375 AGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVF 434
Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
+ + AY R + + + E M G PD T + ++ A +I +TT V+ +H
Sbjct: 435 FNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAY----RISGMTTHVKELH 490
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 101/215 (46%), Gaps = 15/215 (6%)
Query: 40 LQHTPNLFVFIFSIYF-------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
L + PN+ +++ I AH +F+EM G + + L++AYS++G
Sbjct: 144 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 203
Query: 93 CEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151
++ +M S +PD + ++ + ++ F+K++++L+ M + + TYN LI
Sbjct: 204 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 263
Query: 152 NIYGRGG-FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY---SRKKLYRRCLEIFEEMID 207
+ YG+ F+E L Q L KPD T S L A+ + ++ C E F+
Sbjct: 264 DAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQ---S 320
Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
+G P+ T +L+ + ++++ ++ M K
Sbjct: 321 SGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQK 355
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 88/191 (46%), Gaps = 2/191 (1%)
Query: 55 FSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
F A + E MK P + ++ +L+ ++ + K + +++ M + G++P+T N
Sbjct: 201 FDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYN 260
Query: 114 SMLNLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172
++++ YG+ F +ME L M + D T N + +G G IE ME ++ +
Sbjct: 261 TLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQS 320
Query: 173 KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
++P++ T+ L +Y + Y++ + E M T V+I A ++Q
Sbjct: 321 SGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQ 380
Query: 233 VTTLVRTMHKD 243
+ L R M +
Sbjct: 381 MEYLFRLMQSE 391
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 69/130 (53%)
Query: 60 AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119
AV E M++ + T+ ++ +++ A+ + G++ + E + M + P + S++ Y
Sbjct: 348 AVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAY 407
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
GR + +K+ VL +E D+ +N L++ YGR +M+G+ + + K KPD
Sbjct: 408 GRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDK 467
Query: 180 VTWTSRLAAY 189
+T+ + + AY
Sbjct: 468 ITYRTMVKAY 477
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 86/185 (46%), Gaps = 3/185 (1%)
Query: 50 IFSIYFSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
I ++ + A VFE ++ +L P + ++ L+ K K + +M G +
Sbjct: 125 ITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVN 184
Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLF 167
V ++++ Y R G+F+ +L M+ + D+ TY+ILI + + +K++ L
Sbjct: 185 HEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLL 244
Query: 168 QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSS 226
+ + ++P+ +T+ + + AY + K++ +M+ + C PD T + A
Sbjct: 245 SDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGG 304
Query: 227 EDQIE 231
QIE
Sbjct: 305 NGQIE 309
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
+F M+ I P+ + L+ AY + K GV+ + S ++ D N +++ YG
Sbjct: 384 LFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYG 443
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF---IEKMEGLFQSLPAKRL-- 175
R+ +F +M+ VL MEK + D TY ++ Y G ++++ G+ +S+ ++
Sbjct: 444 RMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVGEAQVVV 503
Query: 176 -KPD 178
KPD
Sbjct: 504 KKPD 507
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 83/169 (49%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+A VFE +K + + +L+ Y +TG + V + M + G++ +T + NS
Sbjct: 312 MEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNS 371
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N Y + GQ + E++ + M S D TYN L++ Y R G++++ L + K
Sbjct: 372 LINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKE 431
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
+ P V+T+ L YSR + L +++ M+ G D + L+ A
Sbjct: 432 VVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEA 480
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLY 119
V+++M ++P + + +++ AY ++GNV K + S GL+ + NS++N Y
Sbjct: 212 VYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGY 271
Query: 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
+G E M VL M + + ++ TY LI Y + G +E+ E +F+ L K+L D
Sbjct: 272 AMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQ 331
Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQIE 231
+ + Y R R + + + MI+ G + LI+ C S +E
Sbjct: 332 HMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVE 384
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 88/185 (47%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
DA V + M +G+ L+ Y K+G + + E + ++M+ LKPD N+++
Sbjct: 349 DAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLV 408
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ Y R G ++ ++ M + + TYNIL+ Y R G + L++ + + +
Sbjct: 409 DGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVN 468
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
D ++ ++ L A + + ++++E ++ G D T V+IS +++ + +
Sbjct: 469 ADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEI 528
Query: 237 VRTMH 241
+ ++
Sbjct: 529 LDNVN 533
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 6/196 (3%)
Query: 43 TPNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97
+P +F I +Y +A VF+ M G P++ S LL+ + G V
Sbjct: 154 SPTVFDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVY 213
Query: 98 NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGR 156
+QM + PD F + ++N Y R G +K E ++ TYN LIN Y
Sbjct: 214 DQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAM 273
Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
G +E M + + + + + +VVT+TS + Y +K L +FE + + D
Sbjct: 274 IGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHM 333
Query: 217 AKVLISACSSEDQIEQ 232
VL+ QI
Sbjct: 334 YGVLMDGYCRTGQIRD 349
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
V M G++ + ++ L+ Y K G + + E V + + L D + +++ Y
Sbjct: 283 VLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYC 342
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
R GQ V M + + + N LIN Y + G + + E +F + LKPD
Sbjct: 343 RTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHH 402
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
T+ + + Y R L++ ++M P T +L+ S V +L + M
Sbjct: 403 TYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMM 462
Query: 241 HK 242
K
Sbjct: 463 LK 464
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A +F M + P ++ L+ Y + G V + + +QM + + P N +L
Sbjct: 384 EAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILL 443
Query: 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
Y R+G F + + M ++G A +IS +L ++ G F E M+ L++++ A+ L
Sbjct: 444 KGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMK-LWENVLARGL 502
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220
D +T ++ + + EI + + C P T + L
Sbjct: 503 LTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQAL 547
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 2/199 (1%)
Query: 41 QHTPNLFV--FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
HT N V + + Y +A + ++M + + PT+ ++ +LL YS+ G +
Sbjct: 401 HHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWK 460
Query: 99 QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
M K G+ D +++L +LG F + ++ + D T N++I+ +
Sbjct: 461 MMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKME 520
Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
+ + + + ++ R KP V T+ + Y + + + E M G +P
Sbjct: 521 KVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYN 580
Query: 219 VLISACSSEDQIEQVTTLV 237
LIS + +V LV
Sbjct: 581 TLISGAFKYRHLNKVADLV 599
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 2/186 (1%)
Query: 57 DAHAVF--EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
D VF E LG+ + ++ L+ Y+ G+V V+ M + G+ + S
Sbjct: 242 DKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTS 301
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++ Y + G E+ E V +++ AD Y +L++ Y R G I + ++
Sbjct: 302 LIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIG 361
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
++ + S + Y + +IF M D PD T L+ +++
Sbjct: 362 VRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEAL 421
Query: 235 TLVRTM 240
L M
Sbjct: 422 KLCDQM 427
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 87/200 (43%), Gaps = 1/200 (0%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F++A ++E + G+ + ++++ K V + + +++ ++ KP +
Sbjct: 487 FNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQA 546
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+ + Y ++G ++ V ME+ I YN LI+ + + K+ L L A+
Sbjct: 547 LSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARG 606
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
L P V T+ + + + + + EMI+ G + + ++ D+I++
Sbjct: 607 LTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEAC 666
Query: 235 TLVRTMHKDMKTALPIYFNL 254
L++ + D LP Y +L
Sbjct: 667 LLLQKI-VDFDLLLPGYQSL 685
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Query: 86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-EKGSYAADI 144
KT +A E V N K L P+ V N + + G+ E ++ + + + D
Sbjct: 698 KTQKIA--ESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDE 755
Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204
TY ILI+ G I K L + K + P++VT+ + + + R + +
Sbjct: 756 YTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHK 815
Query: 205 MIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+ G P+ T LI + + L M
Sbjct: 816 LPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKM 851
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 44/103 (42%)
Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166
PD + +++ G K + M +I TYN LI + G +++ + L
Sbjct: 753 PDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRL 812
Query: 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
LP K + P+ +T+ + + + + + E+MI+ G
Sbjct: 813 LHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKG 855
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+ A + +EM GI P + ++ L+ K GNV + + +++++ + G+ P+ N+
Sbjct: 771 INKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNT 830
Query: 115 MLNLYGRLGQF-EKMEEVLTAMEKG 138
+++ + G E M +EKG
Sbjct: 831 LIDGLVKSGNVAEAMRLKEKMIEKG 855
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/169 (18%), Positives = 73/169 (43%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F D ++++ M + G+ S LL A K G+ + + + GL DT +N
Sbjct: 452 FHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNV 511
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
M++ ++ + + +E+L + + TY L + Y + G +++ + + + K
Sbjct: 512 MISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKG 571
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
+ P + + + ++ + + + ++ E+ G P T LI+
Sbjct: 572 IFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITG 620
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 43 TPNLFVFIFSIY-------FSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCE 94
PN V+ +I DA +F ++ P ++ +L+ + G++ K
Sbjct: 716 VPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAF 775
Query: 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
+ ++M G+ P+ N+++ +LG ++ + +L + + + TYN LI+
Sbjct: 776 TLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGL 835
Query: 155 GRGGFIEKMEGLFQSLPAKRL 175
+ G + + L + + K L
Sbjct: 836 VKSGNVAEAMRLKEKMIEKGL 856
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 3/178 (1%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM-HKSGLKPDTFVINSML 116
AH +F+EM L T+KS LL+AY + + + ++ K G+ PD N+M+
Sbjct: 141 AHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMI 200
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-NIYGRGGFIEKMEGLFQSLPAKRL 175
R G + + + +EK + D+ ++N L+ Y R F+E + ++ + +K L
Sbjct: 201 KALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG-DRIWDLMKSKNL 259
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
P++ ++ SR+ +R K + L + + M G PD T LI+A ++ +E+V
Sbjct: 260 SPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEV 317
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Query: 46 LFVFIFSIYFSDAHAVFEEM-KRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104
L ++ S +A F+E+ ++LGITP + ++ ++ A + G++ + ++ K+G
Sbjct: 164 LSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNG 223
Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
+PD N++L + R F + + + M+ + + +I +YN + R
Sbjct: 224 FEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDAL 283
Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
L + + + PDV T+ + + AY ++ + EM + G PD T +LI
Sbjct: 284 NLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLI 340
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
D ++FEE+++ G P + S LL + + + + + + M L P+ NS +
Sbjct: 211 DILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRV 270
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
R +F ++ M+ + D+ TYN LI Y +E++ + + K L
Sbjct: 271 RGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLT 330
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
PD VT+ + +K R +E+ EE I K ++ +I++ T L
Sbjct: 331 PDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQL 390
Query: 237 VR 238
V+
Sbjct: 391 VK 392
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F+DA + + MK GI+P + ++ L+TAY N+ + N+M + GL PDT
Sbjct: 279 FTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCM 338
Query: 115 MLNLYGRLGQFEKMEEV 131
++ L + G ++ EV
Sbjct: 339 LIPLLCKKGDLDRAVEV 355
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 4/213 (1%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A + EM G+ + G K VI +M G PDT + +LN
Sbjct: 432 AEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLN 491
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ E + M++G AD+ TY I+++ + + G IE+ F + P
Sbjct: 492 YLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTP 551
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+VVT+T+ + AY + K E+FE M+ GC P+ T LI Q+E+ +
Sbjct: 552 NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF 611
Query: 238 RTM--HKDMKTALPIYFNLYGEKGVARSNLGQY 268
M KD+ + +YF Y + R N+ Y
Sbjct: 612 ERMCGSKDVPD-VDMYFKQYDDNS-ERPNVVTY 642
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 85/186 (45%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A + + M G P + L+ K G + + + V +M + G + +S++
Sbjct: 657 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 716
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ Y ++ + + +VL+ M + S A ++ Y +I+ + G ++ L Q + K +
Sbjct: 717 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 776
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
P+VVT+T+ + + CLE+ E M G P+ T +VLI C ++ L
Sbjct: 777 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 836
Query: 237 VRTMHK 242
+ M +
Sbjct: 837 LEEMKQ 842
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 4/176 (2%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
FS A +K P+ ++ L+ A+ K + + +M + L+ D F +
Sbjct: 216 FSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRC 275
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++G K E LT +E ++ D Y LI+ E+ + A
Sbjct: 276 FAYSLCKVG---KWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATS 332
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-CSSEDQ 229
P+VVT+++ L KK RC + M+ GCYP L+ A C+S D
Sbjct: 333 CLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDH 388
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 69/159 (43%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+ A +V EM G P ++ +L + + +M + GL D +
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
M++ + + G E+ + M + ++ TY LI+ Y + + LF+++ ++
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
P++VT+++ + + + + +IFE M + PD
Sbjct: 584 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 7/179 (3%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F +A M+ P + ++ LL + +C+ V+N M G P + NS
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI-NIYGRGGFIE-KMEGLFQSLPA 172
+++ Y G ++L M K + YNILI +I G + + L + +
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYS 437
Query: 173 KRLKPDVVTWTSRLAAYSR----KKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSS 226
+ L VV +++++R Y + + EMI G PD T +KVL C++
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA 496
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
+F+EM G+ + +++ YS+ G + QM SG+ PD F + S+L+
Sbjct: 213 LFDEMPVKGLI----TWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCA 268
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
LG + EV +E + ++ N I++Y R G + K +F +P K L V
Sbjct: 269 HLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSL----V 324
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+WT+ + Y + L +F++MI G PDG +++SACS ++ L R M
Sbjct: 325 SWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAM 384
Query: 241 HKDMK 245
++ K
Sbjct: 385 KREYK 389
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 21/192 (10%)
Query: 44 PNLFVFIFSIY-----FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
P + + S+Y +DA VFEE + + + L++ Y+ V +
Sbjct: 88 PFVLTALISMYCKCGLVADARKVFEENPQ--SSQLSVCYNALISGYTANSKVTDAAYMFR 145
Query: 99 QMHKSGLKPDTFVINSMLNL-----YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153
+M ++G+ D+ + ++ L Y LG+ + V KG ++++ N I +
Sbjct: 146 RMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCV-----KGGLDSEVAVLNSFITM 200
Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
Y + G +E LF +P K L +TW + ++ YS+ L LE++E+M +G PD
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGL----ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPD 256
Query: 214 GGTAKVLISACS 225
T ++S+C+
Sbjct: 257 PFTLVSVLSSCA 268
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 37/164 (22%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV--------------------- 96
H V + ++ G P + ++ Y++ GN+AK V
Sbjct: 276 GHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGM 335
Query: 97 ----------INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146
+ M K G++PD V +L+ G +K E+ AM++ Y +
Sbjct: 336 HGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKR-EYKLEPGP 394
Query: 147 --YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
Y+ L+++ GR G +++ +S+P ++PD W + L A
Sbjct: 395 EHYSCLVDLLGRAGRLDEAMEFIESMP---VEPDGAVWGALLGA 435
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
FS++ +++ M R G +P S +L + + + + + K G + + FV+ +
Sbjct: 34 FSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTA 93
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADIST-YNILINIYGRGGFIEKMEGLFQSLPAK 173
++++Y + G +V E+ ++ +S YN LI+ Y + +F+ +
Sbjct: 94 LISMYCKCGLVADARKVF---EENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKET 150
Query: 174 RLKPDVVT 181
+ D VT
Sbjct: 151 GVSVDSVT 158
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 87/186 (46%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
DA +F++M +G P + + ++ K+ V ++N+M K G+ PD NS++
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLI 228
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ G++ +++ M K D+ T+N LI+ + G + + E ++ + + L
Sbjct: 229 SGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLD 288
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
PD+VT++ + E+F M+ GC+PD T +LI+ ++E L
Sbjct: 289 PDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKL 348
Query: 237 VRTMHK 242
M +
Sbjct: 349 FCEMSQ 354
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
+F EM + G+ ++ +L+ Y + G + E + +M G+ P+ N +L+
Sbjct: 348 LFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLC 407
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
G+ EK +L M+K ADI TYNI+I + G + ++ SL + L PD+
Sbjct: 408 DNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIW 467
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
T+T+ + +K L R +F +M + G P+
Sbjct: 468 TYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+SDA + M + I P + + L+ A K G V++ E +M + L PD +
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296
Query: 115 M---LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
+ L +Y RL + E+M + + KG + D+ TY+ILIN Y + +E LF +
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVS--KGCFP-DVVTYSILINGYCKSKKVEHGMKLFCEMS 353
Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
+ + + VT+T + Y R EIF M+ G +P+ T VL+ +IE
Sbjct: 354 QRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413
Query: 232 QVTTLVRTMHKDMKTALPIYFNL 254
+ ++ M K+ A + +N+
Sbjct: 414 KALVILADMQKNGMDADIVTYNI 436
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
S A + +M +LG P++ + LL + + V + +QM G KP+ + N+
Sbjct: 132 LSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNT 191
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ + Q + ++L MEK D+ TYN LI+ G + + +
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKRE 251
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
+ PDV T+ + + A ++ E +EEMI PD T +LI
Sbjct: 252 IYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 73/180 (40%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
++E+M+ LGI + + +LL + + ++ + +M K G +P S+LN +
Sbjct: 103 LWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFC 162
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
R + + M Y ++ YN +I+ + ++ L + + PDVV
Sbjct: 163 RGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVV 222
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
T+ S ++ + + M YPD T LI AC E ++ + M
Sbjct: 223 TYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 73/188 (38%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
D+ +F M + P++ LL+A SK + QM G+ + N
Sbjct: 62 LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+LN + R Q L M K + I T+ L+N + RG + +F +
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
KP+VV + + + + K L++ M G PD T LIS S + T
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 235 TLVRTMHK 242
+V M K
Sbjct: 242 RMVSCMTK 249
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 86/212 (40%), Gaps = 6/212 (2%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
S+A +EEM R + P + ++ LL+ + + E + M G PD + +
Sbjct: 273 SEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSIL 332
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
+N Y + + E ++ M + + TY ILI Y R G + E +F+ + +
Sbjct: 333 INGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV 392
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
P+++T+ L + L I +M G D T ++I ++
Sbjct: 393 HPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWD 452
Query: 236 L-----VRTMHKDMKTALPIYFNLYGEKGVAR 262
+ + + D+ T + LY +KG+ R
Sbjct: 453 IYCSLNCQGLMPDIWTYTTMMLGLY-KKGLRR 483
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 9/207 (4%)
Query: 46 LFVFIFSIY---------FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
L V++F+I SDA VF+E+ + + PT+ S L+ Y K GN+ + +
Sbjct: 238 LNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRL 297
Query: 97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
+QM KS +PD F ++++N + + + + M K + + LI+ + R
Sbjct: 298 KHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSR 357
Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
G I+ M+ +Q + +K L+PD+V + + + + + I + MI G PD T
Sbjct: 358 NGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKIT 417
Query: 217 AKVLISACSSEDQIEQVTTLVRTMHKD 243
LI +E + + M ++
Sbjct: 418 YTTLIDGFCRGGDVETALEIRKEMDQN 444
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 87/197 (44%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
AH +F+EM + G+ P L+ +S+ G + + +M GL+PD + N+++N
Sbjct: 329 AHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVN 388
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ + G ++ M + D TY LI+ + RGG +E + + + ++
Sbjct: 389 GFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIEL 448
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
D V +++ + ++ EM+ AG PD T +++ A + + L+
Sbjct: 449 DRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLL 508
Query: 238 RTMHKDMKTALPIYFNL 254
+ M D + +N+
Sbjct: 509 KEMQSDGHVPSVVTYNV 525
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 82/179 (45%)
Query: 62 FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
+++M G+ P + + L+ + K G++ +++ M + GL+PD ++++ + R
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCR 427
Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
G E E+ M++ D ++ L+ + G + E + + +KPD VT
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487
Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+T + A+ +K + ++ +EM G P T VL++ Q++ L+ M
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAM 546
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 63/134 (47%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A + +EM + GI L+ K G V E + +M ++G+KPD M++
Sbjct: 434 ALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMD 493
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ + G + ++L M+ + + TYN+L+N + G ++ + L ++ + P
Sbjct: 494 AFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553
Query: 178 DVVTWTSRLAAYSR 191
D +T+ + L + R
Sbjct: 554 DDITYNTLLEGHHR 567
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
DA EM R GI P ++ +++ A+ K G+ ++ +M G P N +L
Sbjct: 468 DAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLL 527
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
N +LGQ + + +L AM D TYN L+ + R
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHR 567
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 63/137 (45%)
Query: 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
G ++ +G + +V N ++N + + G ++V + K S + ++N LIN Y
Sbjct: 226 GFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGY 285
Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
+ G +++ L + R +PDV T+++ + A ++ +F+EM G P+
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPND 345
Query: 215 GTAKVLISACSSEDQIE 231
LI S +I+
Sbjct: 346 VIFTTLIHGHSRNGEID 362
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
E+L A + ++ +NIL+N + + G I + +F + + L+P VV++ + + Y
Sbjct: 230 EILDA----GFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGY 285
Query: 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
+ + +M + PD T LI+A E++++ L M K
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCK 338
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%)
Query: 49 FIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108
F S D +F EM G+ ++ L+ G+ + V QM G+ PD
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 469
Query: 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168
+ +L+ G+ EK EV M+K DI Y +I + G ++ LF
Sbjct: 470 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 529
Query: 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
SL K +KP+VVT+ + ++ K+L + + ++M + G P+ GT LI A +
Sbjct: 530 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 589
Query: 229 QIEQVTTLVRTMH 241
L+R M
Sbjct: 590 DKAASAELIREMR 602
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 91/190 (47%)
Query: 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
+ DA +F+EM+ GI P + ++ L++ G + +++ M + + P+ N
Sbjct: 275 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 334
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
++++ + + G+F + E++ M K S DI TYN L+N + ++K + +F+ + +K
Sbjct: 335 ALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK 394
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
PDVVT+ + + + + K E+F EM G D T LI + +
Sbjct: 395 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 454
Query: 234 TTLVRTMHKD 243
+ + M D
Sbjct: 455 QKVFKQMVSD 464
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 75/161 (46%)
Query: 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
++ + K +V + +M G++P+ +S+++ G++ ++L+ M +
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325
Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
++ T+N LI+ + + G + E L+ + + + PD+ T+ S + + +
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 385
Query: 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
++FE M+ C+PD T LI ++E T L R M
Sbjct: 386 QMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM 426
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 83/188 (44%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
SDA A+ ++M +G P + L+ ++ ++++M + G +P+
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 230
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N + G + +L ME AD+ +N +I+ + ++ LF+ + K
Sbjct: 231 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 290
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
++P+VVT++S ++ + ++ +MI+ P+ T LI A E + +
Sbjct: 291 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 350
Query: 235 TLVRTMHK 242
L M K
Sbjct: 351 KLYDDMIK 358
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 35/186 (18%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+SDA + +M I P + + L+ A+ K G + E + + M K + PD F NS
Sbjct: 311 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNS 370
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK------------ 162
++N + + +K +++ M D+ TYN LI + + +E
Sbjct: 371 LVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG 430
Query: 163 -----------MEGLF------------QSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
++GLF + + + + PD++T++ L + L
Sbjct: 431 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490
Query: 200 EIFEEM 205
E+F+ M
Sbjct: 491 EVFDYM 496
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%)
Query: 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
G+ M KS P N +L+ ++ +F+ + + M++ + TYNILIN +
Sbjct: 71 GLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCF 130
Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
R I L + +P +VT +S L Y K + + ++M++ G PD
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190
Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
T LI ++ + LV M
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRM 216
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 75/199 (37%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
DA +F M + P++ LL+A +K + +M + + + N
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N + R Q +L M K Y I T + L+N Y G I L +
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
+PD +T+T+ + + + + M+ GC P+ T V+++ +
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245
Query: 235 TLVRTMHKDMKTALPIYFN 253
L+ M A + FN
Sbjct: 246 NLLNKMEAAKIEADVVIFN 264
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 7/209 (3%)
Query: 40 LQHTPNLFVF--IFSIYFSDAHA-----VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK 92
L P+ F F +F Y S+ A V+E G+ + +LL A K G + K
Sbjct: 313 LGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEK 372
Query: 93 CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
E ++ + GL P+ + N+M++ Y R G + AMEK D YN LI
Sbjct: 373 AEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIR 432
Query: 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212
+ G +E E + K + P V T+ + Y RK + +C +I +EM D G P
Sbjct: 433 RFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMP 492
Query: 213 DGGTAKVLISACSSEDQIEQVTTLVRTMH 241
+ + LI+ ++ + + R M
Sbjct: 493 NVVSYGTLINCLCKGSKLLEAQIVKRDME 521
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F + +EM+ G P + S+ L+ K + + + V M G+ P + N
Sbjct: 475 FDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNM 534
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ G+ E M K ++ TYN LI+ G + + E L + K
Sbjct: 535 LIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG 594
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227
LKPDV T+ S ++ Y +RC+ ++EEM +G P T +LIS C+ E
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKE 647
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%)
Query: 69 GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
G+ P + ++ Y + G++ I M K G+KPD N ++ + LG+ E
Sbjct: 384 GLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENA 443
Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
E+ + M+ + + TYNILI YGR +K + + + P+VV++ + +
Sbjct: 444 EKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINC 503
Query: 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
+ + +M D G P +LI C S+ +IE + M K
Sbjct: 504 LCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLK 557
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 4/187 (2%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
DA +EM + GI + ++ L+ S TG +++ E ++ ++ + GLKPD F NS
Sbjct: 545 IEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNS 604
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ YG G ++ + M++ + TY++LI++ + G IE E LF +
Sbjct: 605 LISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG-IELTERLFGEMS--- 660
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
LKPD++ + L Y+ + + ++MI+ D T LI ++ +V
Sbjct: 661 LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVR 720
Query: 235 TLVRTMH 241
+L+ M+
Sbjct: 721 SLIDEMN 727
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 1/192 (0%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
+F MK I P++ + +L+ K + E + ++M L P N++++ Y
Sbjct: 201 LFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYC 260
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
+ G EK +V M+ + T+N L+ + G +E E + + + PD
Sbjct: 261 KAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAF 320
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV-RT 239
T++ YS + L ++E +D+G + T +L++A E +IE+ ++ R
Sbjct: 321 TFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGRE 380
Query: 240 MHKDMKTALPIY 251
M K + IY
Sbjct: 381 MAKGLVPNEVIY 392
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 31/221 (14%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---------- 104
S+A + E+ R G+ P + ++ L++ Y GNV +C + +M +SG
Sbjct: 580 LSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHL 639
Query: 105 ---------------------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143
LKPD V N +L+ Y G EK + M + S D
Sbjct: 640 LISLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLD 699
Query: 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203
+TYN LI + G + ++ L + A+ ++P+ T+ + + K Y +
Sbjct: 700 KTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYR 759
Query: 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244
EM + G D L+S E + ++ ++ M+ M
Sbjct: 760 EMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNGRM 800
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 9/175 (5%)
Query: 48 VFIFSIYF---------SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVIN 98
VFI+++ +DA +F+EM + P++ ++ L+ Y K GN K V
Sbjct: 214 VFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRE 273
Query: 99 QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158
+M ++P N++L + G E E VL M+ + D T++IL + Y
Sbjct: 274 RMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNE 333
Query: 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
E G++++ +K + T + L A ++ + EI + G P+
Sbjct: 334 KAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPN 388
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 6/222 (2%)
Query: 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111
S S+A +F ++ GI P+ S LLL KT V + +S +P F+
Sbjct: 122 SKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFM 181
Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
+ +L K E+ M+ + YN+LI+ +G + E LF +
Sbjct: 182 YGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEML 241
Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
A+RL P ++T+ + + Y + + ++ E M P T L+ +E
Sbjct: 242 ARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVE 301
Query: 232 QVTTLVRTMHKDM-----KTALPIYFNLYGEKGVARSNLGQY 268
+++ M KD+ I F+ Y A + LG Y
Sbjct: 302 DAENVLKEM-KDLGFVPDAFTFSILFDGYSSNEKAEAALGVY 342
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 8/212 (3%)
Query: 28 YPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT 87
YPS L LLL H F +I VF + P+ + + A K
Sbjct: 141 YPSSDSLT--LLLDHLVKTKQFRVTI------NVFLNILESDFRPSKFMYGKAIQAAVKL 192
Query: 88 GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147
+V K + N+M + P F+ N +++ + + E++ M + TY
Sbjct: 193 SDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 252
Query: 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207
N LI+ Y + G EK + + + A ++P ++T+ + L + + + +EM D
Sbjct: 253 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKD 312
Query: 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239
G PD T +L SS ++ E + T
Sbjct: 313 LGFVPDAFTFSILFDGYSSNEKAEAALGVYET 344
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A E M++ G+ P ++ L+ + + G + E +N+M G+ P N ++
Sbjct: 408 ARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIG 467
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
YGR +F+K ++L ME ++ +Y LIN +G + + + + + + + + P
Sbjct: 468 GYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSP 527
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
V + + K +EM+ G + T LI S ++ + L+
Sbjct: 528 KVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLL 587
Query: 238 RTM-HKDMKTALPIYFNLYGEKGVA 261
+ K +K + Y +L G A
Sbjct: 588 LEISRKGLKPDVFTYNSLISGYGFA 612
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A++ + EM GI P + ++ ++ A K + K V+N M K+G+ PD NS+L+
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 274
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
Y GQ ++ L M D+ TY++L++ + G + +F S+ + LKP
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
++ T+ + L Y+ K + + M+ G +PD +LI A + + +++Q +
Sbjct: 335 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVF 394
Query: 238 RTMHK 242
M +
Sbjct: 395 SKMRQ 399
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 86/197 (43%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A ++M+ G+ P + ++ LL+ K G + + + M K GLKP+ ++L
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
Y G +M +L M + D ++ILI Y + G +++ +F + + L
Sbjct: 344 QGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 403
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
P+ VT+ + + + + FE+MID G P LI + ++ E+ L
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 463
Query: 237 VRTMHKDMKTALPIYFN 253
+ M I+FN
Sbjct: 464 ILEMLDRGICLNTIFFN 480
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 88/197 (44%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A VF +M++ G+ P ++ ++ K+G V QM GL P V NS+++
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
++E+ EE++ M + +N +I+ + + G + + E LF+ + +KP
Sbjct: 450 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+V+T+ + + Y +++ M+ G P+ T LI+ ++E L
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569
Query: 238 RTMHKDMKTALPIYFNL 254
+ M + I +N+
Sbjct: 570 KEMESSGVSPDIITYNI 586
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
DA FE+M G++P + L+ + E +I +M G+ +T NS++
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ + + G+ + E++ M + ++ TYN LIN Y G +++ L + + LK
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 543
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
P+ VT+++ + Y + L +F+EM +G PD T +++
Sbjct: 544 PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQG 590
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 78/175 (44%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A V M + G+ P ++ +L Y +G + G + +M G++PD + +++
Sbjct: 250 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ G+ + ++ +M K +I+TY L+ Y G + +M GL + + P
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 369
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
D ++ + AY+++ + + +F +M G P+ T +I ++E
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVED 424
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 6/178 (3%)
Query: 69 GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128
G P + S+ ++ + K G+ K ++M G+ PD NS++ + +K
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
EVL M K D TYN +++ Y G ++ G + + + ++PDVVT+ S L
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY-SLLMD 309
Query: 189 YSRKKLYRRCLE---IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
Y K RC+E IF+ M G P+ T L+ +++ + ++ L+ M ++
Sbjct: 310 YLCKN--GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 11/152 (7%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A + EM GI ++ ++ K G V + E + M + G+KP+ N+++N
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
Y G+ ++ ++L+ M + TY+ LIN Y + +E LF+ + + + P
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579
Query: 178 DVVTW---------TSRLAAYSRKKLYRRCLE 200
D++T+ T R AA K+LY R E
Sbjct: 580 DIITYNIILQGLFQTRRTAA--AKELYVRITE 609
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 9/179 (5%)
Query: 68 LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127
+ TP +K L A +T + V+ +M + G P+ F N +L + ++
Sbjct: 123 IAFTPLLKG----LCADKRTSDAMDI--VLRRMTELGCIPNVFSYNILLKGLCDENRSQE 176
Query: 128 MEEVLTAMEK---GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184
E+L M G D+ +Y +IN + + G +K + + + + PDVVT+ S
Sbjct: 177 ALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236
Query: 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
+AA + + + +E+ M+ G PD T ++ S Q ++ ++ M D
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD 295
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 35/222 (15%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
++ +FE M R+G+ P + ++ L+ Y G + + +++ M GLKP+T ++++
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADI-------------------------------- 144
N Y ++ + E + ME + DI
Sbjct: 554 NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQ 613
Query: 145 ---STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201
STYNI+++ + + +FQ+L LK + T+ + A + ++
Sbjct: 614 IELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDL 673
Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243
F G P+ T +++ + +E++ L +M +
Sbjct: 674 FVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 715
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 82/181 (45%), Gaps = 4/181 (2%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
DA +F+EM+ G++P + ++ ++L +T A + + ++ +SG + + N +L
Sbjct: 564 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 623
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ + + ++ + + T+NI+I+ + G ++ + LF + + L
Sbjct: 624 HGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV 683
Query: 177 PDVVTWTSRLAAYS--RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
P+ WT RL A + + L ++F M D GC D G ++ +I +
Sbjct: 684 PNY--WTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAG 741
Query: 235 T 235
T
Sbjct: 742 T 742
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 8/212 (3%)
Query: 56 SDA-HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM---HKSGLKPDTFV 111
SDA V M LG P + S+ +LL + +++ M G PD
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198
Query: 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
+++N + + G +K M D+ TYN +I + ++K + ++
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258
Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
+ PD +T+ S L Y + + ++M G PD T +L+ +
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318
Query: 232 QVTTLVRTMHK-DMKTALPIYFNL---YGEKG 259
+ + +M K +K + Y L Y KG
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI- 201
D+ TY ILI R G ++ ++ K + D + +T L K ++I
Sbjct: 86 DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145
Query: 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249
M + GC P+ + +L+ E++ ++ L+ M D P
Sbjct: 146 LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSP 193
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
Query: 55 FSDAHAVFEEMKRLGIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113
F + +V +M G + P + + ++ +Y N+ K E ++ G++PD N
Sbjct: 216 FEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFN 275
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
++ +G+ G ++KM V+ MEK ++ TYNI+I +G+ G IEKM+ +F+ + +
Sbjct: 276 ILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQ 335
Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
+KP+ +T+ S + AYS+ L + + +++++ D +I+A
Sbjct: 336 GVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINA 385
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 90/180 (50%), Gaps = 7/180 (3%)
Query: 37 FLLLQHTPNLFVF-IFSIYFSDAH------AVFEEMKRLGITPTMKSHMLLLTAYSKTGN 89
F L+ P++ F I + F A +V + M++ + T ++ +++ + K G
Sbjct: 262 FQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGR 321
Query: 90 VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149
+ K + V +M G+KP++ S++N Y + G K++ VL + D +N
Sbjct: 322 IEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNC 381
Query: 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209
+IN YG+ G + M+ L+ + ++ KPD +T+ + + Y+ ++ E+ ++MI +G
Sbjct: 382 IINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSG 441
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 12/228 (5%)
Query: 44 PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
P++F F I F ++ EM LG+ + ++ ++ Y K G + E V
Sbjct: 163 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 222
Query: 97 INQMHKSGLK-PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155
+ M + G PD +NS++ YG KME + + DI+T+NILI +G
Sbjct: 223 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 282
Query: 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215
+ G +KM + + + VT+ + + + + ++F +M G P+
Sbjct: 283 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 342
Query: 216 TAKVLISACSSEDQIEQVTTLVRTM-HKDMKTALPIY---FNLYGEKG 259
T L++A S + ++ +++R + + D+ P + N YG+ G
Sbjct: 343 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAG 390
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 2/202 (0%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSML 116
A +FE M G+ PT+ + L++ Y K+ + K + M S KPD F ++
Sbjct: 113 ASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
+ +LG+F+ ++ ++ M TYN +I+ YG+ G E+ME + +
Sbjct: 173 SCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDS 232
Query: 177 -PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
PDV T S + +Y + R+ + G PD T +LI + +++ +
Sbjct: 233 LPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCS 292
Query: 236 LVRTMHKDMKTALPIYFNLYGE 257
++ M K + + +N+ E
Sbjct: 293 VMDFMEKRFFSLTTVTYNIVIE 314
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 80/179 (44%)
Query: 62 FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
+ + +G+ P + + +L+ ++ K G K V++ M K T N ++ +G+
Sbjct: 259 YSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGK 318
Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
G+ EKM++V M+ + TY L+N Y + G + K++ + + + + D
Sbjct: 319 AGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPF 378
Query: 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
+ + AY + E++ +M + C PD T +I ++ + V L + M
Sbjct: 379 FNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQM 437
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199
Y TY L + G ++ LF+ + ++ LKP + +TS ++ Y + +L +
Sbjct: 90 YEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAF 149
Query: 200 EIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
E M + C PD T VLIS C + + V ++V M
Sbjct: 150 STLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEM 191
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
++ AY + G++A + + QM + KPD +M+ Y G F+ ++E+ M
Sbjct: 382 IINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSG 441
Query: 140 YAADI 144
DI
Sbjct: 442 ENLDI 446
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 84/167 (50%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
S+A VF+EMK GI P + ++ +++ A + G +++ V M SG P+ N+
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN 330
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++ ++ + G+ EK+ +V M+K D TYN LI + R +E + ++ K+
Sbjct: 331 LMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKK 390
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
+ + T+ + +K+ ++ +M++A C P+ T +L+
Sbjct: 391 CEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILM 437
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 87/187 (46%), Gaps = 1/187 (0%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
S+A F M+ G P + ++++ S+ ++ + + + K +PD V ++
Sbjct: 203 SEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNL 261
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
+ + R G+ + E+V M+ ++ TY+I+I+ R G I + +F +
Sbjct: 262 VRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGC 321
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
P+ +T+ + + + + + L+++ +M GC PD T LI A ++ +E
Sbjct: 322 APNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVK 381
Query: 236 LVRTMHK 242
++ TM K
Sbjct: 382 VLNTMIK 388
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 7/186 (3%)
Query: 44 PNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
PN++ + I S AH VF +M G P + L+ + K G K V
Sbjct: 288 PNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQV 347
Query: 97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
NQM K G +PDT N ++ + R E +VL M K + ST+N + +
Sbjct: 348 YNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEK 407
Query: 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
+ ++ + + +P+ VT+ + + K L++ +EM D P+ T
Sbjct: 408 KRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNT 467
Query: 217 AKVLIS 222
++L++
Sbjct: 468 YRLLVT 473
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 77/161 (47%), Gaps = 1/161 (0%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
S+A + F+ +K P + + L+ + + G +++ E V +M +G++P+ + + +
Sbjct: 238 SEAQSFFDSLKD-RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIV 296
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
++ R GQ + +V M A + T+N L+ ++ + G EK+ ++ +
Sbjct: 297 IDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGC 356
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
+PD +T+ + A+ R + +++ MI C + T
Sbjct: 357 EPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNAST 397
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 86/188 (45%), Gaps = 1/188 (0%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
F A + + MK + ++++ +L+ Y + G ++ N+M G PD +
Sbjct: 167 FDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSI 226
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
+++ R + + + ++ K + D+ Y L+ + R G I + E +F+ +
Sbjct: 227 VISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAG 285
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
++P+V T++ + A R R ++F +M+D+GC P+ T L+ + E+V
Sbjct: 286 IEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVL 345
Query: 235 TLVRTMHK 242
+ M K
Sbjct: 346 QVYNQMKK 353
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/191 (18%), Positives = 84/191 (43%), Gaps = 1/191 (0%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
V+ +MK+LG P ++ L+ A+ + N+ V+N M K + + N++
Sbjct: 347 VYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIE 406
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
+ + + M + + TYNIL+ ++ + + + + + K ++P+V
Sbjct: 407 KKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVN 466
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSEDQIEQVTTLVRT 239
T+ + + + ++F+EM++ C P +++++ Q+++ LV
Sbjct: 467 TYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEK 526
Query: 240 MHKDMKTALPI 250
M + A P+
Sbjct: 527 MIQKGLVARPL 537
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 36/155 (23%)
Query: 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-------IEKME- 164
N M++L G++ QF+ ++ M+ + I T+ ILI Y R G +ME
Sbjct: 155 NEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMED 214
Query: 165 ---------------------------GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197
F SL R +PDV+ +T+ + + R
Sbjct: 215 YGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEISE 273
Query: 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
++F+EM AG P+ T ++I A QI +
Sbjct: 274 AEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISR 308
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 48/108 (44%)
Query: 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206
YN +I++ G+ + L + ++ ++ + T+T + Y R L + F M
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254
D GC PD ++IS S + + + + ++ + + +Y NL
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNL 261
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+A F MK LG+ P + L+ + ++ V++ M + G+KPD ++
Sbjct: 547 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N + +G ++ EE+ T M +G DI ++IL Y R G EK E + +
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQV 233
++P+VV +T ++ + ++ ++++++M G P+ T + LI Q +
Sbjct: 667 VRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKA 726
Query: 234 TTLVRTMHKD----MKTALPIYFNLYGEKGVARSNLGQYIGN 271
L++ M + + + + + GV+ SN +G+
Sbjct: 727 EELLKDMEGKNVVPTRKTMQLIADGWKSIGVSNSNDANTLGS 768
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 13/197 (6%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+AH++F + G P++ ++ L+TA ++ + +I+++ K+GLKPDT + N+++
Sbjct: 337 EAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAII 396
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ-SLPAKRL 175
N G ++ ++ M++ ST+N LI YG+ G +E+ L L + L
Sbjct: 397 NASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEML 456
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA-------CSSED 228
+P+ T + A+ ++ I +M G PD T L A C++ED
Sbjct: 457 QPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAED 516
Query: 229 QIEQVTTLVRTMHKDMK 245
I + R +H +K
Sbjct: 517 MI-----IPRMLHNKVK 528
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 98/218 (44%), Gaps = 13/218 (5%)
Query: 27 PYPSHFMLINFLLLQHTPNLFVFIFSI-------YFSDAHAVFEEMKRLGITPTMKSHML 79
P +H + + H P+L + + +F ++ ++++ G+ P
Sbjct: 335 PQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNA 394
Query: 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS 139
++ A S++GN+ + + +M +SG KP N+++ YG++G+ E+ +L M +
Sbjct: 395 IINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDE 454
Query: 140 -YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
+ T NIL+ + IE+ + + + +KPDVVT+ + AY+R + C
Sbjct: 455 MLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYAR--IGSTC 512
Query: 199 LE---IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233
I M+ P+ T +++ E ++E+
Sbjct: 513 TAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEA 550
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 11/194 (5%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEG-VINQMHKSGLKPDTFVIN 113
+A + +M+ G+ P + + L AY++ G+ E +I +M + +KP+
Sbjct: 476 IEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535
Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF--IEKMEGLFQSLP 171
+++N Y G+ E+ M++ ++ +N LI GF I M+G+ + +
Sbjct: 536 TIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIK-----GFLNINDMDGVGEVVD 590
Query: 172 AKR---LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228
+KPDVVT+++ + A+S +RC EI+ +M++ G PD +L +
Sbjct: 591 LMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAG 650
Query: 229 QIEQVTTLVRTMHK 242
+ E+ ++ M K
Sbjct: 651 EPEKAEQILNQMRK 664
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 1/169 (0%)
Query: 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133
++S L+ + G + + N + + G KP +++ R F + +++
Sbjct: 319 VRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLIS 378
Query: 134 AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193
+EK D +N +IN G +++ +F+ + KP T+ + + Y +
Sbjct: 379 KVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIG 438
Query: 194 LYRRCLEIFEEMI-DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241
+ + M+ D P+ T +L+ A ++ +IE+ +V M
Sbjct: 439 KLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 8/149 (5%)
Query: 102 KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--------GSYAADISTYNILINI 153
K KP F NL F+ EE + G+ D+ + L+N
Sbjct: 269 KKDYKPAVFEEKKEANLADVEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNG 328
Query: 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
G ++ +F +L + KP ++T+T+ + A +R+K + L + ++ G PD
Sbjct: 329 LIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPD 388
Query: 214 GGTAKVLISACSSEDQIEQVTTLVRTMHK 242
+I+A S ++Q + M +
Sbjct: 389 TILFNAIINASSESGNLDQAMKIFEKMKE 417
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%)
Query: 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
+F EM + G+ ++ L+ + + + + V QM G+ P+ N++L+
Sbjct: 422 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 481
Query: 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180
+ G+ EK V +++ I TYNI+I + G +E LF SL K +KPDV+
Sbjct: 482 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVI 541
Query: 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
+ + ++ + RK L +F +M + G PD GT
Sbjct: 542 IYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 95/191 (49%), Gaps = 6/191 (3%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
+SDA + +M I P + + L+ A+ K G + + E + ++M K + PD F +S
Sbjct: 311 WSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 370
Query: 115 MLN---LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171
++N ++ RL + + M E++ + + ++ TYN LIN + + I++ LF+ +
Sbjct: 371 LINGFCMHDRLDEAKHMFELMISKD---CFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427
Query: 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231
+ L + VT+T+ + + + + +F++M+ G +P+ T L+ ++E
Sbjct: 428 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 487
Query: 232 QVTTLVRTMHK 242
+ + + +
Sbjct: 488 KAMVVFEYLQR 498
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 87/188 (46%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
DA +F EM+ G+ P + ++ L++ + +++ M + + P+ N++
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
++ + + G+ + E++ M K S DI TY+ LIN + +++ + +F+ + +K
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
P+VVT+ + + + + K +E+F EM G + T LI +
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 456
Query: 236 LVRTMHKD 243
+ + M D
Sbjct: 457 VFKQMVSD 464
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 86/183 (46%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A A+ +M +LG P++ + LL Y ++ +++QM + G +PDT ++++
Sbjct: 139 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 198
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
+ + ++ M + ++ TY +++N + G I+ L + A +++
Sbjct: 199 GLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEA 258
Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
+VV +++ + + + + L +F EM + G P+ T LIS + ++ + L+
Sbjct: 259 NVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLL 318
Query: 238 RTM 240
M
Sbjct: 319 SDM 321
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%)
Query: 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154
G+ M KS P F N +L+ ++ +F+ + + M++ + ++ TYNILIN +
Sbjct: 71 GLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCF 130
Query: 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214
R I L + +P +VT +S L Y K + + ++M++ G PD
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190
Query: 215 GTAKVLISACSSEDQIEQVTTLVRTM 240
T LI ++ + LV M
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRM 216
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 82/188 (43%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
SDA A+ ++M +G P + L+ ++ ++++M + G +P+
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 230
Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
++N + G + +L ME A++ Y+ +I+ + + LF + K
Sbjct: 231 VVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 290
Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234
++P+V+T++S ++ + + + +MI+ P+ T LI A E ++ +
Sbjct: 291 VRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAE 350
Query: 235 TLVRTMHK 242
L M K
Sbjct: 351 KLYDEMIK 358
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 77/192 (40%)
Query: 50 IFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT 109
+ S+ DA +F M + P++ LL+A +K + +M + G+ +
Sbjct: 61 LHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNL 120
Query: 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169
+ N ++N + R Q +L M K Y I T + L+N Y G I L
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180
Query: 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
+ +PD +T+T+ + + + + M+ GC P+ T V+++
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 230 IEQVTTLVRTMH 241
I+ L+ M
Sbjct: 241 IDLAFNLLNKME 252
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
+A VF++M G+ P + ++ LL K G + K V + +S ++P + N M
Sbjct: 452 DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 511
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
+ + G+ E ++ ++ D+ YN +I+ + R G E+ + LF+ +
Sbjct: 512 IEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGP 571
Query: 176 KPD 178
PD
Sbjct: 572 LPD 574
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
A VFE ++R + PT+ ++ +++ K G V + + G+KPD + N+M++
Sbjct: 489 AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMIS 548
Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADIST 146
+ R G E+ + + M + D T
Sbjct: 549 GFCRKGLKEEADALFRKMREDGPLPDSGT 577
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 88/187 (47%)
Query: 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
+A V +M G P + + LL+ Y+ G +A ++ M + G +P+ ++
Sbjct: 270 EAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLI 329
Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
++ + E+ +V ME+ AD+ TY L++ + + G I+K + + K L
Sbjct: 330 QALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLM 389
Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
P +T+ + A+ +K+ + CLE+ E+M +PD G V+I ++++ L
Sbjct: 390 PSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRL 449
Query: 237 VRTMHKD 243
M ++
Sbjct: 450 WNEMEEN 456
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 84/178 (47%), Gaps = 2/178 (1%)
Query: 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
+A VF EM+R + ++ L++ + K G + KC V++ M K GL P +
Sbjct: 339 EEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHI 398
Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
+ + + FE+ E++ M + Y DI YN++I + + G +++ L+ + L
Sbjct: 399 MVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGL 458
Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG--GTAKVLISACSSEDQIE 231
P V T+ + + + + F+EM+ G + GT K+L++ + ++E
Sbjct: 459 SPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLE 516
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 14/214 (6%)
Query: 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVI 112
F + + E+M+++ P + + +++ K G V + + N+M ++GL P DTFVI
Sbjct: 408 FEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVI 467
Query: 113 NSMLNLYGRLG-QFEKMEEVLTAMEKGSYA-ADISTYNILINIYGRGGFIEKMEGLFQSL 170
M+N G E + + +G ++ + T +L+N + +E + ++ +
Sbjct: 468 --MINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCI 525
Query: 171 PAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229
+K + +V++WT + A K + EMI+ P T L+
Sbjct: 526 TSKGACELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMDFMPQPDTFAKLMKGLKKLYN 585
Query: 230 IE---QVTTLVRTMHKDMKTALPIYFNLYGEKGV 260
E ++T VR M + + + F +Y +GV
Sbjct: 586 REFAGEITEKVRNMAAEREMS----FKMYKRRGV 615
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 23/204 (11%)
Query: 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA 134
KS+ +L +S+ V K E +N+ SG++ +I +LN G G + A
Sbjct: 85 KSYRILRKFHSR---VPKLELALNE---SGVELRPGLIERVLNRCGDAGNL-GYRFFVWA 137
Query: 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR---LKPDV-VTWTSRLAAYS 190
++ Y I Y ++ I + + GL + + + ++P++ V R A+
Sbjct: 138 AKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASAD 197
Query: 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250
+ ++ +E+ +EM G PD L+ A ++ L +DM+ P+
Sbjct: 198 ---MVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLF----EDMRMRFPV 250
Query: 251 ---YFN--LYGEKGVARSNLGQYI 269
YF LYG V + +Y+
Sbjct: 251 NLRYFTSLLYGWCRVGKMMEAKYV 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,368,059
Number of Sequences: 539616
Number of extensions: 3993193
Number of successful extensions: 14817
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 10287
Number of HSP's gapped (non-prelim): 2873
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)