Query 036275
Match_columns 271
No_of_seqs 341 out of 1592
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 11:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.6E-41 1.2E-45 304.7 28.1 253 16-268 470-742 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.2E-41 1.3E-45 304.5 27.7 254 16-269 435-708 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2E-38 4.3E-43 283.9 21.9 249 14-266 255-515 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.4E-38 5.1E-43 283.4 21.5 253 13-269 153-415 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 7.9E-38 1.7E-42 286.0 22.9 253 13-269 217-479 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 8.2E-37 1.8E-41 279.3 22.3 249 17-269 120-378 (857)
7 PRK11788 tetratricopeptide rep 99.8 6.8E-17 1.5E-21 136.1 24.8 221 44-268 110-341 (389)
8 PRK11788 tetratricopeptide rep 99.8 1.5E-16 3.2E-21 134.0 25.5 223 44-268 72-305 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.7 1E-14 2.2E-19 134.7 28.2 187 52-244 614-800 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.7 1.9E-14 4.1E-19 132.9 28.0 217 46-268 572-793 (899)
11 PRK15174 Vi polysaccharide exp 99.6 2E-12 4.4E-17 115.3 27.3 151 115-268 218-375 (656)
12 TIGR00990 3a0801s09 mitochondr 99.6 2.3E-12 5E-17 114.7 27.0 221 44-268 334-565 (615)
13 PRK15174 Vi polysaccharide exp 99.6 3.1E-12 6.8E-17 114.1 27.3 212 52-268 123-341 (656)
14 TIGR02521 type_IV_pilW type IV 99.6 8.3E-12 1.8E-16 97.1 24.8 196 44-243 34-232 (234)
15 PF13429 TPR_15: Tetratricopep 99.5 7.8E-14 1.7E-18 112.2 10.6 218 44-268 47-271 (280)
16 TIGR00990 3a0801s09 mitochondr 99.5 7.9E-12 1.7E-16 111.3 24.3 213 52-268 307-531 (615)
17 KOG4422 Uncharacterized conser 99.5 7.9E-12 1.7E-16 100.9 20.7 209 32-244 195-463 (625)
18 PRK09782 bacteriophage N4 rece 99.5 2.5E-11 5.4E-16 111.5 26.5 217 44-268 480-700 (987)
19 PF13429 TPR_15: Tetratricopep 99.5 2E-13 4.4E-18 109.8 10.9 212 52-268 21-237 (280)
20 PF13041 PPR_2: PPR repeat fam 99.5 1.1E-13 2.3E-18 80.6 6.5 47 73-119 2-48 (50)
21 COG2956 Predicted N-acetylgluc 99.5 1.8E-11 4E-16 95.4 20.4 228 38-268 33-272 (389)
22 PF13041 PPR_2: PPR repeat fam 99.5 1.3E-13 2.8E-18 80.2 6.7 50 107-156 1-50 (50)
23 KOG4422 Uncharacterized conser 99.5 8.9E-12 1.9E-16 100.6 17.9 194 44-241 119-340 (625)
24 KOG4626 O-linked N-acetylgluco 99.5 1.1E-11 2.4E-16 104.4 18.4 210 52-269 265-480 (966)
25 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 3.9E-15 89.5 23.2 194 71-267 28-225 (234)
26 PRK10747 putative protoheme IX 99.4 9.3E-11 2E-15 98.9 22.7 210 52-269 131-385 (398)
27 KOG4626 O-linked N-acetylgluco 99.4 1.5E-11 3.3E-16 103.5 17.1 217 44-268 221-445 (966)
28 PRK12370 invasion protein regu 99.4 1.6E-10 3.5E-15 101.4 24.3 203 52-260 274-490 (553)
29 PRK11447 cellulose synthase su 99.4 1.4E-10 3.1E-15 110.0 25.6 219 47-269 467-735 (1157)
30 KOG1126 DNA-binding cell divis 99.4 2.8E-11 6E-16 102.5 17.9 234 32-270 337-616 (638)
31 PRK09782 bacteriophage N4 rece 99.4 5.1E-10 1.1E-14 103.1 26.9 203 37-246 503-709 (987)
32 PRK11447 cellulose synthase su 99.4 6.6E-10 1.4E-14 105.6 28.4 221 44-268 388-694 (1157)
33 PRK12370 invasion protein regu 99.4 7.6E-10 1.6E-14 97.3 24.0 204 53-264 318-526 (553)
34 PRK10049 pgaA outer membrane p 99.3 3E-09 6.5E-14 97.0 26.1 220 44-268 52-333 (765)
35 PRK10747 putative protoheme IX 99.3 3E-09 6.4E-14 89.8 23.9 216 44-268 85-351 (398)
36 TIGR00540 hemY_coli hemY prote 99.3 5.7E-09 1.2E-13 88.5 25.6 119 52-173 97-216 (409)
37 TIGR00540 hemY_coli hemY prote 99.3 1.4E-09 3E-14 92.2 21.5 213 52-269 166-394 (409)
38 KOG1155 Anaphase-promoting com 99.3 2.3E-09 5E-14 87.6 19.8 212 54-268 242-489 (559)
39 COG3063 PilF Tfp pilus assembl 99.3 1.3E-08 2.8E-13 76.3 21.9 198 46-247 40-240 (250)
40 KOG1126 DNA-binding cell divis 99.2 6.1E-10 1.3E-14 94.5 16.6 212 33-250 410-627 (638)
41 PRK10049 pgaA outer membrane p 99.2 9.7E-09 2.1E-13 93.7 25.4 193 52-248 250-461 (765)
42 PRK11189 lipoprotein NlpI; Pro 99.2 1.2E-08 2.5E-13 82.7 22.6 198 44-250 67-272 (296)
43 PRK11189 lipoprotein NlpI; Pro 99.2 1.5E-08 3.3E-13 82.1 22.9 209 52-269 39-260 (296)
44 PRK14574 hmsH outer membrane p 99.2 2.2E-08 4.9E-13 90.7 23.6 191 44-241 38-230 (822)
45 KOG1155 Anaphase-promoting com 99.2 1.2E-08 2.6E-13 83.5 19.2 166 73-242 329-494 (559)
46 COG3071 HemY Uncharacterized e 99.1 2.8E-07 6E-12 74.3 25.2 215 52-268 97-384 (400)
47 KOG1840 Kinesin light chain [C 99.1 1.7E-08 3.8E-13 85.9 18.7 224 44-267 202-472 (508)
48 COG3063 PilF Tfp pilus assembl 99.1 8.5E-08 1.8E-12 71.9 19.6 174 75-251 36-210 (250)
49 KOG1129 TPR repeat-containing 99.1 1.8E-08 4E-13 79.2 16.6 218 45-268 227-452 (478)
50 COG2956 Predicted N-acetylgluc 99.1 1.2E-07 2.6E-12 74.5 20.6 195 46-243 74-278 (389)
51 KOG2076 RNA polymerase III tra 99.1 2E-07 4.3E-12 82.1 23.8 89 180-268 415-506 (895)
52 KOG4318 Bicoid mRNA stability 99.1 2.9E-09 6.3E-14 93.2 12.6 70 176-248 201-270 (1088)
53 KOG2003 TPR repeat-containing 99.1 7.5E-08 1.6E-12 79.0 19.7 189 52-246 503-692 (840)
54 PF12569 NARP1: NMDA receptor- 99.0 2.3E-07 5E-12 79.9 23.6 121 146-269 196-329 (517)
55 PRK14574 hmsH outer membrane p 99.0 1.8E-07 4E-12 84.9 24.1 200 46-247 298-517 (822)
56 KOG2003 TPR repeat-containing 99.0 9.5E-08 2E-12 78.4 19.4 181 44-230 528-710 (840)
57 COG3071 HemY Uncharacterized e 99.0 2E-07 4.3E-12 75.2 20.5 187 52-241 131-388 (400)
58 PF12854 PPR_1: PPR repeat 99.0 7.7E-10 1.7E-14 58.2 4.2 32 139-170 2-33 (34)
59 KOG0547 Translocase of outer m 99.0 9.3E-08 2E-12 79.0 17.9 212 52-268 339-560 (606)
60 KOG4318 Bicoid mRNA stability 99.0 5E-09 1.1E-13 91.8 10.9 88 141-231 201-288 (1088)
61 KOG0547 Translocase of outer m 99.0 1.4E-07 3E-12 78.0 18.5 192 46-241 365-564 (606)
62 KOG1129 TPR repeat-containing 99.0 2.2E-08 4.7E-13 78.8 12.6 201 44-248 259-463 (478)
63 PF12854 PPR_1: PPR repeat 98.9 1.5E-09 3.2E-14 57.1 3.9 32 104-135 2-33 (34)
64 TIGR03302 OM_YfiO outer membra 98.9 4.7E-07 1E-11 70.9 19.0 168 74-244 33-233 (235)
65 PF04733 Coatomer_E: Coatomer 98.9 7E-08 1.5E-12 77.5 13.6 147 86-243 114-265 (290)
66 KOG1840 Kinesin light chain [C 98.9 6.6E-07 1.4E-11 76.5 19.6 196 46-241 246-477 (508)
67 PF04733 Coatomer_E: Coatomer 98.9 6.4E-08 1.4E-12 77.7 12.6 210 46-269 40-259 (290)
68 KOG2002 TPR-containing nuclear 98.8 4.3E-07 9.2E-12 80.8 17.3 220 32-254 514-756 (1018)
69 COG5010 TadD Flp pilus assembl 98.8 4.1E-06 8.8E-11 64.2 20.3 165 73-242 66-230 (257)
70 TIGR03302 OM_YfiO outer membra 98.8 1.5E-06 3.3E-11 68.0 18.7 163 44-208 37-232 (235)
71 cd05804 StaR_like StaR_like; a 98.7 9.6E-06 2.1E-10 67.6 22.7 152 52-208 56-215 (355)
72 KOG1173 Anaphase-promoting com 98.7 3.6E-06 7.8E-11 71.0 18.9 197 44-244 315-519 (611)
73 PRK10370 formate-dependent nit 98.7 2.7E-06 5.9E-11 64.6 16.2 155 52-223 29-186 (198)
74 PRK10370 formate-dependent nit 98.7 8.7E-06 1.9E-10 61.8 18.4 154 80-248 22-178 (198)
75 KOG0495 HAT repeat protein [RN 98.7 2.3E-05 5E-10 67.5 22.3 229 34-268 608-874 (913)
76 COG4783 Putative Zn-dependent 98.7 7.2E-06 1.6E-10 68.1 18.5 143 44-208 310-454 (484)
77 PRK15359 type III secretion sy 98.6 3.4E-06 7.4E-11 60.7 14.8 95 77-173 27-121 (144)
78 cd05804 StaR_like StaR_like; a 98.6 2.3E-05 5.1E-10 65.3 21.7 189 52-244 19-216 (355)
79 KOG1173 Anaphase-promoting com 98.6 1.8E-05 3.9E-10 66.9 20.3 211 52-268 257-512 (611)
80 TIGR02552 LcrH_SycD type III s 98.6 3.1E-06 6.8E-11 60.1 14.0 97 75-173 18-114 (135)
81 PLN02789 farnesyltranstransfer 98.6 4.1E-05 8.8E-10 62.5 22.0 210 44-258 40-268 (320)
82 COG5010 TadD Flp pilus assembl 98.6 5.4E-06 1.2E-10 63.6 15.7 152 52-207 79-230 (257)
83 KOG0495 HAT repeat protein [RN 98.6 3E-05 6.5E-10 66.8 21.5 190 52-247 597-786 (913)
84 PRK15179 Vi polysaccharide bio 98.6 1.6E-05 3.4E-10 71.3 20.7 161 70-241 82-243 (694)
85 KOG1125 TPR repeat-containing 98.6 1.7E-05 3.6E-10 67.2 19.4 183 52-240 298-524 (579)
86 KOG3081 Vesicle coat complex C 98.6 2.7E-05 5.8E-10 60.0 18.7 154 79-243 113-271 (299)
87 PF12569 NARP1: NMDA receptor- 98.6 2.5E-05 5.5E-10 67.5 20.9 181 58-243 130-334 (517)
88 PRK15359 type III secretion sy 98.6 3.4E-06 7.5E-11 60.7 13.4 108 95-208 14-121 (144)
89 PF10037 MRP-S27: Mitochondria 98.6 1.1E-06 2.4E-11 73.4 12.2 124 69-192 61-186 (429)
90 KOG3060 Uncharacterized conser 98.6 0.00011 2.4E-09 56.3 21.5 202 52-257 25-234 (289)
91 PF09976 TPR_21: Tetratricopep 98.6 5.9E-06 1.3E-10 59.6 14.4 123 44-169 15-143 (145)
92 KOG2002 TPR-containing nuclear 98.6 7.6E-05 1.7E-09 67.0 23.2 125 44-171 273-407 (1018)
93 KOG1128 Uncharacterized conser 98.5 4.1E-06 9E-11 72.6 14.3 196 33-242 417-615 (777)
94 KOG1128 Uncharacterized conser 98.5 7.6E-06 1.6E-10 71.0 15.4 198 52-269 411-611 (777)
95 TIGR02552 LcrH_SycD type III s 98.5 9.2E-06 2E-10 57.7 13.7 120 96-220 5-124 (135)
96 PRK14720 transcript cleavage f 98.5 3.5E-05 7.5E-10 70.2 20.1 198 44-248 34-257 (906)
97 KOG1070 rRNA processing protei 98.5 2.9E-05 6.3E-10 72.0 19.5 190 52-248 1471-1668(1710)
98 PRK15179 Vi polysaccharide bio 98.5 3.3E-05 7.1E-10 69.3 19.8 136 106-245 83-219 (694)
99 COG4783 Putative Zn-dependent 98.5 0.0001 2.3E-09 61.5 21.1 208 27-241 216-435 (484)
100 TIGR00756 PPR pentatricopeptid 98.5 4.4E-07 9.5E-12 48.0 4.5 33 181-213 2-34 (35)
101 TIGR00756 PPR pentatricopeptid 98.4 2.9E-07 6.3E-12 48.7 3.7 33 146-178 2-34 (35)
102 KOG3081 Vesicle coat complex C 98.4 0.00011 2.3E-09 56.8 17.9 163 97-269 96-265 (299)
103 PF10037 MRP-S27: Mitochondria 98.4 9.6E-06 2.1E-10 67.9 13.4 125 103-227 60-186 (429)
104 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.8E-05 4E-10 65.9 15.0 121 78-205 173-294 (395)
105 KOG2076 RNA polymerase III tra 98.4 0.00013 2.8E-09 65.0 20.7 189 52-243 152-345 (895)
106 KOG1070 rRNA processing protei 98.4 0.00018 4E-09 67.0 22.2 200 32-236 1476-1693(1710)
107 PF13812 PPR_3: Pentatricopept 98.4 4.3E-07 9.3E-12 47.8 3.5 31 181-211 3-33 (34)
108 PF13812 PPR_3: Pentatricopept 98.4 7.5E-07 1.6E-11 46.8 4.4 33 145-177 2-34 (34)
109 PF08579 RPM2: Mitochondrial r 98.4 7.4E-06 1.6E-10 54.7 9.3 77 45-121 30-116 (120)
110 KOG2053 Mitochondrial inherita 98.4 0.00056 1.2E-08 61.2 23.3 214 37-254 36-266 (932)
111 KOG1915 Cell cycle control pro 98.4 0.001 2.2E-08 55.7 23.4 80 52-135 154-233 (677)
112 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.4E-05 7.3E-10 64.4 15.2 116 52-173 182-297 (395)
113 PF09976 TPR_21: Tetratricopep 98.3 9.7E-05 2.1E-09 53.2 16.0 126 76-204 14-143 (145)
114 KOG1174 Anaphase-promoting com 98.3 0.00028 6E-09 57.9 19.6 206 52-264 279-523 (564)
115 KOG1125 TPR repeat-containing 98.3 5.2E-05 1.1E-09 64.3 15.6 184 83-269 294-522 (579)
116 KOG1156 N-terminal acetyltrans 98.3 0.0008 1.7E-08 58.2 22.2 118 148-268 375-505 (700)
117 KOG1914 mRNA cleavage and poly 98.3 0.00023 4.9E-09 60.3 18.5 203 55-261 309-526 (656)
118 KOG1915 Cell cycle control pro 98.3 0.00033 7.2E-09 58.5 18.8 189 52-246 86-276 (677)
119 KOG3060 Uncharacterized conser 98.3 0.00059 1.3E-08 52.5 18.6 158 87-247 25-187 (289)
120 PLN02789 farnesyltranstransfer 98.3 0.0016 3.5E-08 53.3 22.7 185 52-241 84-300 (320)
121 PF08579 RPM2: Mitochondrial r 98.2 3E-05 6.4E-10 51.9 10.2 79 148-226 29-116 (120)
122 KOG1156 N-terminal acetyltrans 98.2 0.00043 9.2E-09 59.8 18.6 220 44-268 11-242 (700)
123 KOG4340 Uncharacterized conser 98.2 0.00017 3.8E-09 56.7 14.9 193 44-245 13-209 (459)
124 PF01535 PPR: PPR repeat; Int 98.2 2.2E-06 4.8E-11 43.9 3.2 25 147-171 3-27 (31)
125 KOG3785 Uncharacterized conser 98.2 0.00011 2.4E-09 59.1 13.7 195 44-247 289-494 (557)
126 PF05843 Suf: Suppressor of fo 98.1 0.00018 3.9E-09 57.8 14.7 142 75-222 2-148 (280)
127 PF01535 PPR: PPR repeat; Int 98.1 3.2E-06 7E-11 43.2 3.2 30 181-210 2-31 (31)
128 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00018 4E-09 49.5 12.9 95 114-208 7-105 (119)
129 KOG4162 Predicted calmodulin-b 98.1 0.002 4.4E-08 56.8 21.5 121 147-269 653-778 (799)
130 KOG1174 Anaphase-promoting com 98.1 0.0013 2.7E-08 54.2 18.7 144 122-268 313-494 (564)
131 KOG2047 mRNA splicing factor [ 98.1 0.004 8.6E-08 54.2 22.3 220 44-268 251-534 (835)
132 cd00189 TPR Tetratricopeptide 98.1 9.1E-05 2E-09 48.1 10.6 91 114-206 5-95 (100)
133 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00017 3.6E-09 49.7 12.1 104 145-248 3-110 (119)
134 cd00189 TPR Tetratricopeptide 98.1 9.4E-05 2E-09 48.0 10.4 94 77-172 3-96 (100)
135 PRK14720 transcript cleavage f 98.1 0.00049 1.1E-08 62.9 17.6 190 71-268 28-246 (906)
136 PRK02603 photosystem I assembl 98.1 0.00038 8.3E-09 51.7 14.4 91 73-164 34-126 (172)
137 PF06239 ECSIT: Evolutionarily 98.1 0.00018 4E-09 54.1 12.3 87 73-159 46-153 (228)
138 PRK10866 outer membrane biogen 98.0 0.0021 4.5E-08 50.5 18.9 178 44-241 36-239 (243)
139 KOG4340 Uncharacterized conser 98.0 0.00012 2.5E-09 57.6 11.5 161 76-239 146-335 (459)
140 PF06239 ECSIT: Evolutionarily 98.0 0.00019 4.1E-09 54.0 12.1 105 106-229 44-153 (228)
141 KOG2376 Signal recognition par 98.0 0.001 2.3E-08 56.9 17.7 112 52-173 25-139 (652)
142 PF05843 Suf: Suppressor of fo 98.0 0.00025 5.4E-09 57.0 13.4 133 110-246 2-139 (280)
143 PRK15363 pathogenicity island 98.0 0.00025 5.5E-09 50.8 11.7 83 52-136 48-130 (157)
144 PLN03088 SGT1, suppressor of 98.0 0.0003 6.5E-09 58.6 13.8 89 48-138 10-99 (356)
145 PRK02603 photosystem I assembl 98.0 0.00062 1.3E-08 50.6 14.2 128 110-259 36-165 (172)
146 PRK04841 transcriptional regul 98.0 0.0019 4.1E-08 60.8 20.7 156 52-207 465-640 (903)
147 PRK04841 transcriptional regul 98.0 0.002 4.3E-08 60.7 20.7 217 52-268 504-754 (903)
148 CHL00033 ycf3 photosystem I as 98.0 0.00053 1.2E-08 50.7 13.7 63 110-172 36-100 (168)
149 KOG3616 Selective LIM binding 97.9 0.00057 1.2E-08 60.2 14.8 185 52-266 745-929 (1636)
150 CHL00033 ycf3 photosystem I as 97.9 0.00023 5E-09 52.6 11.2 113 55-168 15-137 (168)
151 PLN03088 SGT1, suppressor of 97.9 0.00049 1.1E-08 57.3 14.2 102 81-186 9-110 (356)
152 PF12895 Apc3: Anaphase-promot 97.9 3.3E-05 7.2E-10 49.9 5.5 80 53-134 3-83 (84)
153 PF12895 Apc3: Anaphase-promot 97.9 2.9E-05 6.2E-10 50.2 4.8 78 123-203 3-82 (84)
154 PRK15363 pathogenicity island 97.9 0.0018 4E-08 46.5 14.0 94 112-207 38-131 (157)
155 PF14938 SNAP: Soluble NSF att 97.9 0.0012 2.5E-08 53.3 14.8 198 44-243 38-266 (282)
156 PF14559 TPR_19: Tetratricopep 97.8 0.00015 3.2E-09 44.7 7.1 62 121-185 3-64 (68)
157 KOG3616 Selective LIM binding 97.8 0.0018 3.9E-08 57.2 15.8 79 116-205 739-817 (1636)
158 PF12688 TPR_5: Tetratrico pep 97.8 0.0024 5.3E-08 44.1 13.5 104 81-189 8-116 (120)
159 KOG0624 dsRNA-activated protei 97.8 0.013 2.8E-07 47.4 19.0 196 44-245 159-372 (504)
160 KOG0624 dsRNA-activated protei 97.8 0.013 2.8E-07 47.4 19.3 211 52-268 119-364 (504)
161 PF04840 Vps16_C: Vps16, C-ter 97.8 0.012 2.5E-07 48.2 19.4 107 145-267 178-284 (319)
162 PF13525 YfiO: Outer membrane 97.8 0.0046 1E-07 47.2 16.0 179 44-233 9-197 (203)
163 KOG2047 mRNA splicing factor [ 97.8 0.024 5.1E-07 49.6 22.2 198 44-243 390-615 (835)
164 PRK10153 DNA-binding transcrip 97.7 0.0042 9.2E-08 54.3 17.1 143 69-217 332-489 (517)
165 PF14559 TPR_19: Tetratricopep 97.7 0.00022 4.7E-09 43.9 6.3 51 52-103 4-54 (68)
166 PRK10153 DNA-binding transcrip 97.7 0.0072 1.6E-07 52.9 17.6 141 104-248 332-487 (517)
167 KOG2053 Mitochondrial inherita 97.7 0.041 8.8E-07 49.9 21.9 211 47-264 16-245 (932)
168 KOG0548 Molecular co-chaperone 97.7 0.013 2.8E-07 49.9 18.0 210 44-259 227-470 (539)
169 KOG3617 WD40 and TPR repeat-co 97.7 0.007 1.5E-07 54.3 17.0 143 52-206 813-994 (1416)
170 KOG2796 Uncharacterized conser 97.6 0.018 3.8E-07 45.0 17.3 139 77-218 180-323 (366)
171 KOG3617 WD40 and TPR repeat-co 97.6 0.0057 1.2E-07 54.8 16.2 199 52-269 741-991 (1416)
172 KOG2796 Uncharacterized conser 97.6 0.019 4.1E-07 44.8 16.9 159 111-270 179-352 (366)
173 KOG0985 Vesicle coat protein c 97.6 0.0057 1.2E-07 56.0 15.9 110 44-167 1077-1189(1666)
174 KOG0548 Molecular co-chaperone 97.6 0.0054 1.2E-07 52.1 14.6 185 76-268 226-442 (539)
175 KOG0553 TPR repeat-containing 97.5 0.0015 3.2E-08 51.6 10.3 101 83-187 90-190 (304)
176 KOG4162 Predicted calmodulin-b 97.5 0.065 1.4E-06 47.8 21.8 125 114-242 655-782 (799)
177 KOG2376 Signal recognition par 97.5 0.029 6.2E-07 48.5 18.1 188 47-241 315-518 (652)
178 KOG0985 Vesicle coat protein c 97.5 0.023 5.1E-07 52.2 18.3 128 52-201 1061-1188(1666)
179 PF03704 BTAD: Bacterial trans 97.5 0.0041 8.9E-08 44.7 11.7 69 147-216 65-138 (146)
180 KOG1127 TPR repeat-containing 97.5 0.0056 1.2E-07 55.8 14.5 82 120-205 573-656 (1238)
181 KOG1914 mRNA cleavage and poly 97.5 0.028 6.1E-07 48.1 17.7 175 55-232 347-528 (656)
182 PF13432 TPR_16: Tetratricopep 97.5 0.00064 1.4E-08 41.4 6.1 54 83-137 6-59 (65)
183 PF03704 BTAD: Bacterial trans 97.4 0.019 4.2E-07 41.2 14.8 131 108-256 2-143 (146)
184 PF14938 SNAP: Soluble NSF att 97.4 0.008 1.7E-07 48.5 14.0 168 75-244 36-226 (282)
185 PF12921 ATP13: Mitochondrial 97.4 0.0047 1E-07 43.1 10.9 97 109-225 2-99 (126)
186 PF12688 TPR_5: Tetratrico pep 97.4 0.014 3.1E-07 40.3 13.1 89 116-206 8-102 (120)
187 KOG1127 TPR repeat-containing 97.4 0.015 3.2E-07 53.3 16.2 190 47-242 465-658 (1238)
188 PRK10803 tol-pal system protei 97.4 0.0049 1.1E-07 48.9 12.1 102 145-248 144-251 (263)
189 PF13432 TPR_16: Tetratricopep 97.4 0.0013 2.8E-08 40.0 7.0 55 152-207 5-59 (65)
190 PRK10866 outer membrane biogen 97.4 0.043 9.4E-07 43.1 17.8 188 73-266 31-233 (243)
191 KOG0553 TPR repeat-containing 97.4 0.0042 9.1E-08 49.1 11.1 100 119-223 91-191 (304)
192 PRK15331 chaperone protein Sic 97.4 0.0031 6.8E-08 45.6 9.5 92 44-137 41-133 (165)
193 PF13414 TPR_11: TPR repeat; P 97.3 0.0019 4.1E-08 39.8 7.3 61 180-241 4-65 (69)
194 PRK10803 tol-pal system protei 97.3 0.0063 1.4E-07 48.3 11.8 103 109-215 143-251 (263)
195 PF13525 YfiO: Outer membrane 97.3 0.04 8.6E-07 42.1 15.8 178 76-264 7-197 (203)
196 PF13414 TPR_11: TPR repeat; P 97.3 0.0011 2.4E-08 40.8 6.1 21 115-135 9-29 (69)
197 COG4235 Cytochrome c biogenesi 97.3 0.018 3.9E-07 45.7 13.8 113 106-222 153-268 (287)
198 COG4700 Uncharacterized protei 97.2 0.047 1E-06 40.4 17.1 155 79-239 61-218 (251)
199 PF10300 DUF3808: Protein of u 97.2 0.05 1.1E-06 47.2 17.2 159 80-241 194-374 (468)
200 PF12921 ATP13: Mitochondrial 97.2 0.01 2.2E-07 41.4 10.3 97 73-189 1-98 (126)
201 COG4235 Cytochrome c biogenesi 97.2 0.027 5.9E-07 44.7 13.7 105 141-247 153-260 (287)
202 COG4700 Uncharacterized protei 97.2 0.056 1.2E-06 40.1 18.2 134 70-205 85-219 (251)
203 KOG2041 WD40 repeat protein [G 97.1 0.0099 2.1E-07 52.4 11.7 186 48-268 743-946 (1189)
204 PF13371 TPR_9: Tetratricopept 97.1 0.0034 7.4E-08 39.0 7.0 51 120-171 6-56 (73)
205 PF04840 Vps16_C: Vps16, C-ter 97.0 0.059 1.3E-06 44.2 15.0 109 111-239 179-287 (319)
206 COG1729 Uncharacterized protei 97.0 0.026 5.6E-07 44.3 12.1 95 44-138 145-244 (262)
207 PF13371 TPR_9: Tetratricopept 97.0 0.0075 1.6E-07 37.5 7.5 55 83-138 4-58 (73)
208 KOG3941 Intermediate in Toll s 96.9 0.026 5.7E-07 44.5 11.3 46 126-171 140-186 (406)
209 PF10300 DUF3808: Protein of u 96.9 0.13 2.8E-06 44.7 16.7 169 35-206 182-374 (468)
210 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.01 2.3E-07 49.9 9.6 65 107-173 73-141 (453)
211 PF04053 Coatomer_WDAD: Coatom 96.8 0.052 1.1E-06 46.5 13.7 154 52-240 274-428 (443)
212 COG4105 ComL DNA uptake lipopr 96.8 0.17 3.7E-06 39.5 19.1 178 44-244 38-234 (254)
213 PF13424 TPR_12: Tetratricopep 96.8 0.0053 1.1E-07 38.8 5.6 61 75-135 6-72 (78)
214 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.091 2E-06 44.3 13.7 145 75-224 398-545 (660)
215 COG3898 Uncharacterized membra 96.7 0.26 5.6E-06 40.9 22.1 222 33-261 72-310 (531)
216 PF13281 DUF4071: Domain of un 96.7 0.29 6.3E-06 40.8 21.9 195 52-248 116-339 (374)
217 KOG3785 Uncharacterized conser 96.6 0.3 6.6E-06 40.0 17.3 143 52-207 70-213 (557)
218 KOG3941 Intermediate in Toll s 96.6 0.023 4.9E-07 44.8 8.9 72 124-195 87-174 (406)
219 PF13170 DUF4003: Protein of u 96.5 0.32 6.9E-06 39.5 16.2 133 55-189 78-227 (297)
220 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.1 2.3E-06 44.1 12.8 66 71-138 72-141 (453)
221 COG4105 ComL DNA uptake lipopr 96.5 0.29 6.2E-06 38.3 15.3 146 120-266 45-225 (254)
222 smart00299 CLH Clathrin heavy 96.5 0.19 4.1E-06 35.7 16.0 124 79-225 12-136 (140)
223 PF04053 Coatomer_WDAD: Coatom 96.4 0.057 1.2E-06 46.3 11.2 138 34-204 287-427 (443)
224 PF13424 TPR_12: Tetratricopep 96.4 0.015 3.2E-07 36.7 5.9 61 181-241 7-73 (78)
225 KOG2610 Uncharacterized conser 96.3 0.21 4.5E-06 40.6 12.7 151 52-204 116-272 (491)
226 PF13512 TPR_18: Tetratricopep 96.3 0.12 2.5E-06 36.7 10.1 78 44-121 14-94 (142)
227 PF07035 Mic1: Colon cancer-as 96.2 0.3 6.5E-06 35.8 15.3 29 98-126 18-46 (167)
228 KOG2280 Vacuolar assembly/sort 96.2 0.37 8.1E-06 43.2 14.7 98 155-267 695-792 (829)
229 smart00299 CLH Clathrin heavy 96.2 0.28 6.1E-06 34.8 14.4 125 44-191 10-137 (140)
230 PRK15331 chaperone protein Sic 96.1 0.2 4.3E-06 36.5 11.0 88 83-172 46-133 (165)
231 COG5107 RNA14 Pre-mRNA 3'-end 96.0 0.21 4.6E-06 42.2 12.0 133 110-246 398-534 (660)
232 KOG1538 Uncharacterized conser 96.0 0.34 7.3E-06 42.9 13.5 209 44-267 601-839 (1081)
233 PF07035 Mic1: Colon cancer-as 96.0 0.4 8.6E-06 35.2 15.2 136 59-208 14-149 (167)
234 PF13170 DUF4003: Protein of u 95.9 0.75 1.6E-05 37.4 17.2 151 90-242 78-249 (297)
235 PF10602 RPN7: 26S proteasome 95.8 0.31 6.7E-06 36.3 11.2 97 75-171 37-140 (177)
236 PF13281 DUF4071: Domain of un 95.8 0.99 2.1E-05 37.7 18.6 164 47-213 147-338 (374)
237 COG3898 Uncharacterized membra 95.7 1 2.2E-05 37.5 22.2 182 52-242 167-391 (531)
238 PF08631 SPO22: Meiosis protei 95.7 0.88 1.9E-05 36.6 21.1 194 44-240 39-272 (278)
239 KOG0543 FKBP-type peptidyl-pro 95.7 0.31 6.6E-06 40.6 11.4 91 81-172 215-319 (397)
240 KOG0550 Molecular chaperone (D 95.6 0.59 1.3E-05 39.1 12.9 131 110-243 169-316 (486)
241 KOG0543 FKBP-type peptidyl-pro 95.6 0.34 7.4E-06 40.3 11.6 125 115-242 214-354 (397)
242 KOG2041 WD40 repeat protein [G 95.6 0.28 6.1E-06 43.8 11.4 177 71-268 689-875 (1189)
243 PF13512 TPR_18: Tetratricopep 95.6 0.51 1.1E-05 33.5 10.9 53 120-173 21-76 (142)
244 PF09205 DUF1955: Domain of un 95.6 0.5 1.1E-05 33.1 13.7 137 52-210 15-151 (161)
245 PF13929 mRNA_stabil: mRNA sta 95.6 0.94 2E-05 36.2 13.7 135 92-226 146-290 (292)
246 COG3629 DnrI DNA-binding trans 95.6 0.2 4.3E-06 40.0 9.8 78 145-223 154-236 (280)
247 KOG2280 Vacuolar assembly/sort 95.5 1.5 3.4E-05 39.5 15.8 81 142-237 713-793 (829)
248 COG1729 Uncharacterized protei 95.5 0.38 8.2E-06 37.9 11.0 104 146-250 144-251 (262)
249 PF04184 ST7: ST7 protein; In 95.5 1.5 3.2E-05 37.8 18.0 58 149-206 264-322 (539)
250 PF09205 DUF1955: Domain of un 95.3 0.62 1.3E-05 32.6 11.9 139 86-246 14-152 (161)
251 KOG4555 TPR repeat-containing 95.3 0.62 1.3E-05 32.5 10.8 91 118-209 52-145 (175)
252 COG4649 Uncharacterized protei 95.3 0.81 1.8E-05 33.7 13.8 53 155-207 143-195 (221)
253 KOG1941 Acetylcholine receptor 95.1 1.3 2.8E-05 36.6 13.1 221 48-268 14-269 (518)
254 COG3118 Thioredoxin domain-con 95.1 1.4 3E-05 35.3 16.5 142 82-228 142-286 (304)
255 COG3629 DnrI DNA-binding trans 95.0 0.53 1.2E-05 37.6 10.6 81 109-190 153-238 (280)
256 PF09613 HrpB1_HrpK: Bacterial 95.0 0.95 2.1E-05 32.8 12.2 54 118-173 19-73 (160)
257 PRK11906 transcriptional regul 95.0 2.1 4.5E-05 36.7 16.5 78 92-171 322-399 (458)
258 COG1747 Uncharacterized N-term 95.0 2.2 4.8E-05 37.0 18.6 164 72-243 64-234 (711)
259 KOG4555 TPR repeat-containing 94.9 0.64 1.4E-05 32.5 9.4 94 151-246 50-147 (175)
260 KOG2610 Uncharacterized conser 94.9 1.4 3E-05 36.1 12.6 153 84-239 113-272 (491)
261 PF13428 TPR_14: Tetratricopep 94.8 0.12 2.6E-06 28.4 4.9 24 114-137 6-29 (44)
262 PF08631 SPO22: Meiosis protei 94.8 1.8 3.8E-05 34.9 22.0 161 52-215 6-193 (278)
263 COG0457 NrfG FOG: TPR repeat [ 94.6 1.4 3.1E-05 33.0 23.0 191 52-245 72-267 (291)
264 PF13428 TPR_14: Tetratricopep 94.6 0.19 4.1E-06 27.6 5.3 30 75-104 2-31 (44)
265 KOG4570 Uncharacterized conser 94.5 0.53 1.2E-05 38.0 9.4 102 104-207 59-163 (418)
266 PF10602 RPN7: 26S proteasome 94.4 0.74 1.6E-05 34.3 9.7 97 110-206 37-140 (177)
267 PF09613 HrpB1_HrpK: Bacterial 94.2 1.5 3.4E-05 31.8 12.4 50 52-103 23-73 (160)
268 KOG1920 IkappaB kinase complex 94.1 2.7 5.8E-05 40.1 14.2 90 106-207 932-1027(1265)
269 KOG0550 Molecular chaperone (D 94.0 3.3 7.1E-05 34.9 13.3 164 74-245 168-352 (486)
270 COG0457 NrfG FOG: TPR repeat [ 93.8 2.1 4.6E-05 32.0 23.5 212 53-266 37-257 (291)
271 KOG4570 Uncharacterized conser 93.7 2 4.4E-05 34.8 11.1 103 69-173 59-164 (418)
272 PF04184 ST7: ST7 protein; In 93.7 4.3 9.2E-05 35.2 19.8 145 44-192 172-344 (539)
273 PF11207 DUF2989: Protein of u 93.6 1 2.2E-05 34.0 9.0 79 85-164 117-198 (203)
274 PF13176 TPR_7: Tetratricopept 93.6 0.21 4.5E-06 26.1 4.1 23 77-99 2-24 (36)
275 PF07079 DUF1347: Protein of u 93.6 4.2 9.1E-05 34.8 13.3 110 44-156 49-179 (549)
276 PRK15180 Vi polysaccharide bio 93.4 0.98 2.1E-05 38.7 9.5 125 120-248 300-425 (831)
277 PF02284 COX5A: Cytochrome c o 93.4 1.3 2.9E-05 29.3 8.1 40 167-206 33-72 (108)
278 KOG2114 Vacuolar assembly/sort 93.3 2.7 5.9E-05 38.5 12.5 139 85-241 379-517 (933)
279 PRK11906 transcriptional regul 93.3 4.8 0.0001 34.6 15.9 162 75-240 252-433 (458)
280 PF02259 FAT: FAT domain; Int 93.3 3.1 6.8E-05 34.4 12.7 186 52-243 11-213 (352)
281 PF00637 Clathrin: Region in C 93.3 0.077 1.7E-06 37.9 2.6 85 80-171 13-97 (143)
282 KOG2114 Vacuolar assembly/sort 93.2 1.6 3.4E-05 40.0 10.8 135 52-204 381-515 (933)
283 KOG1538 Uncharacterized conser 93.0 6.5 0.00014 35.3 14.6 184 44-243 633-846 (1081)
284 COG3118 Thioredoxin domain-con 93.0 4 8.6E-05 32.8 17.0 165 27-194 116-287 (304)
285 PF13929 mRNA_stabil: mRNA sta 93.0 4 8.7E-05 32.7 15.1 115 125-239 144-263 (292)
286 PF13176 TPR_7: Tetratricopept 93.0 0.33 7.2E-06 25.3 4.2 23 182-204 2-24 (36)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 92.9 1.1 2.4E-05 29.3 7.2 45 57-101 25-69 (103)
288 PF13431 TPR_17: Tetratricopep 92.9 0.22 4.8E-06 25.7 3.4 31 63-94 3-33 (34)
289 PF02284 COX5A: Cytochrome c o 92.7 2 4.2E-05 28.6 9.0 65 180-244 9-75 (108)
290 COG4785 NlpI Lipoprotein NlpI, 92.7 3.6 7.9E-05 31.6 13.1 187 52-247 78-270 (297)
291 TIGR02561 HrpB1_HrpK type III 92.6 2.8 6.1E-05 30.0 10.5 51 52-104 23-74 (153)
292 COG1747 Uncharacterized N-term 92.4 7.1 0.00015 34.1 20.0 173 44-224 69-249 (711)
293 PF13431 TPR_17: Tetratricopep 91.8 0.23 4.9E-06 25.6 2.5 22 143-164 12-33 (34)
294 KOG4077 Cytochrome c oxidase, 91.4 2 4.3E-05 29.8 7.3 46 197-242 67-112 (149)
295 PF13762 MNE1: Mitochondrial s 91.3 4 8.7E-05 29.2 10.6 92 100-191 28-127 (145)
296 KOG1585 Protein required for f 91.1 6.2 0.00013 31.0 14.8 191 44-238 34-251 (308)
297 KOG0276 Vesicle coat complex C 90.9 9.5 0.00021 34.0 12.6 148 52-239 599-746 (794)
298 KOG1550 Extracellular protein 90.9 11 0.00025 33.7 19.8 180 55-244 228-427 (552)
299 cd08819 CARD_MDA5_2 Caspase ac 90.9 2.7 5.9E-05 27.0 7.1 66 197-264 20-85 (88)
300 PF13374 TPR_10: Tetratricopep 90.5 0.87 1.9E-05 24.1 4.4 25 76-100 4-28 (42)
301 cd00923 Cyt_c_Oxidase_Va Cytoc 90.5 3.5 7.7E-05 27.1 9.3 43 163-205 26-68 (103)
302 PF00637 Clathrin: Region in C 90.5 0.099 2.1E-06 37.3 0.5 84 115-205 13-96 (143)
303 PF13934 ELYS: Nuclear pore co 90.4 4.6 0.0001 31.4 9.7 110 67-190 72-183 (226)
304 PF00515 TPR_1: Tetratricopept 90.2 0.96 2.1E-05 22.9 4.1 27 76-102 3-29 (34)
305 KOG1550 Extracellular protein 89.9 14 0.00031 33.1 16.3 169 90-265 228-417 (552)
306 PF07079 DUF1347: Protein of u 89.8 12 0.00027 32.2 19.7 71 52-122 92-180 (549)
307 PF13374 TPR_10: Tetratricopep 89.7 1.1 2.3E-05 23.8 4.3 25 146-170 4-28 (42)
308 PF07719 TPR_2: Tetratricopept 89.4 1.2 2.6E-05 22.4 4.1 26 77-102 4-29 (34)
309 PF00515 TPR_1: Tetratricopept 88.7 1.6 3.5E-05 22.0 4.3 25 182-206 4-28 (34)
310 PRK15180 Vi polysaccharide bio 88.1 17 0.00036 31.7 13.2 123 47-173 296-420 (831)
311 COG2976 Uncharacterized protei 87.7 10 0.00022 28.6 12.8 133 73-209 53-189 (207)
312 COG4455 ImpE Protein of avirul 87.3 5.9 0.00013 30.5 7.9 55 78-133 5-59 (273)
313 PF07719 TPR_2: Tetratricopept 87.3 2.2 4.8E-05 21.3 4.3 22 184-205 6-27 (34)
314 PF06552 TOM20_plant: Plant sp 87.2 5.7 0.00012 29.5 7.6 98 55-155 7-124 (186)
315 PF13762 MNE1: Mitochondrial s 87.1 9.1 0.0002 27.4 11.0 97 64-160 27-131 (145)
316 TIGR02508 type_III_yscG type I 86.9 7 0.00015 26.0 8.1 86 125-218 21-106 (115)
317 KOG0276 Vesicle coat complex C 86.6 12 0.00026 33.4 10.3 137 35-204 607-746 (794)
318 PF13174 TPR_6: Tetratricopept 86.5 1.6 3.6E-05 21.6 3.5 22 222-243 8-29 (33)
319 KOG1130 Predicted G-alpha GTPa 86.5 1.5 3.2E-05 37.0 4.8 133 75-207 196-343 (639)
320 PF07721 TPR_4: Tetratricopept 86.4 1.5 3.3E-05 20.8 3.1 16 151-166 8-23 (26)
321 KOG0991 Replication factor C, 85.6 16 0.00034 28.7 16.4 111 119-234 169-291 (333)
322 COG4785 NlpI Lipoprotein NlpI, 85.5 15 0.00033 28.4 17.0 28 181-208 239-266 (297)
323 KOG1586 Protein required for f 85.4 16 0.00034 28.6 11.8 21 224-244 164-184 (288)
324 KOG4077 Cytochrome c oxidase, 85.3 8.3 0.00018 26.8 7.1 46 163-208 68-113 (149)
325 COG4649 Uncharacterized protei 85.1 14 0.00029 27.6 14.7 139 108-247 58-200 (221)
326 PF13181 TPR_8: Tetratricopept 85.1 3.4 7.3E-05 20.7 4.3 25 77-101 4-28 (34)
327 COG2909 MalT ATP-dependent tra 85.0 34 0.00074 32.1 16.3 191 52-242 428-646 (894)
328 COG4455 ImpE Protein of avirul 84.7 10 0.00022 29.3 8.0 66 52-118 14-81 (273)
329 TIGR03504 FimV_Cterm FimV C-te 84.5 2.5 5.4E-05 23.3 3.7 21 116-136 6-26 (44)
330 TIGR02561 HrpB1_HrpK type III 84.1 13 0.00029 26.7 11.4 51 121-173 22-73 (153)
331 KOG4234 TPR repeat-containing 84.1 17 0.00036 27.8 8.9 89 117-208 103-197 (271)
332 COG3947 Response regulator con 83.9 21 0.00046 28.9 14.5 183 56-242 104-341 (361)
333 KOG1920 IkappaB kinase complex 83.8 45 0.00097 32.5 14.8 145 86-243 863-1028(1265)
334 PF11848 DUF3368: Domain of un 83.7 5.9 0.00013 22.2 5.2 33 190-222 13-45 (48)
335 COG0735 Fur Fe2+/Zn2+ uptake r 83.3 11 0.00024 27.0 7.6 60 63-123 10-69 (145)
336 KOG1130 Predicted G-alpha GTPa 83.3 3.8 8.1E-05 34.7 5.7 131 112-242 198-343 (639)
337 PF13181 TPR_8: Tetratricopept 82.8 4.4 9.6E-05 20.2 4.5 26 182-207 4-29 (34)
338 KOG2066 Vacuolar assembly/sort 82.7 17 0.00037 33.4 9.8 21 249-269 509-529 (846)
339 KOG0687 26S proteasome regulat 82.6 26 0.00056 28.9 14.0 21 148-168 108-128 (393)
340 TIGR03504 FimV_Cterm FimV C-te 82.4 4.2 9.2E-05 22.4 4.0 20 187-206 7-26 (44)
341 COG2976 Uncharacterized protei 81.8 20 0.00044 27.1 14.9 130 108-244 53-189 (207)
342 PF09670 Cas_Cas02710: CRISPR- 81.5 26 0.00057 29.7 10.4 59 44-103 135-198 (379)
343 KOG1585 Protein required for f 81.2 25 0.00054 27.8 13.1 149 52-203 84-251 (308)
344 PF11207 DUF2989: Protein of u 81.2 22 0.00047 27.1 12.1 79 119-199 117-198 (203)
345 PF09477 Type_III_YscG: Bacter 81.0 14 0.00031 24.9 8.8 41 211-253 68-108 (116)
346 PF11848 DUF3368: Domain of un 81.0 7.5 0.00016 21.8 4.9 25 123-147 16-40 (48)
347 COG0735 Fur Fe2+/Zn2+ uptake r 80.6 11 0.00024 27.0 6.8 58 133-191 10-67 (145)
348 KOG4648 Uncharacterized conser 80.2 14 0.00031 30.5 7.9 95 116-214 104-198 (536)
349 PF02259 FAT: FAT domain; Int 80.1 32 0.0007 28.4 15.9 158 52-211 42-216 (352)
350 PF11846 DUF3366: Domain of un 80.0 12 0.00026 28.1 7.3 32 176-207 141-172 (193)
351 COG3947 Response regulator con 79.5 32 0.00069 28.0 16.1 160 55-218 149-357 (361)
352 cd08819 CARD_MDA5_2 Caspase ac 79.5 14 0.0003 23.8 7.4 63 95-163 23-85 (88)
353 KOG2063 Vacuolar assembly/sort 79.2 16 0.00034 34.5 8.8 116 76-191 506-638 (877)
354 PF09797 NatB_MDM20: N-acetylt 79.2 14 0.00031 31.1 8.1 46 92-138 201-246 (365)
355 cd00280 TRFH Telomeric Repeat 78.9 25 0.00054 26.4 10.7 48 90-137 85-139 (200)
356 PF11663 Toxin_YhaV: Toxin wit 78.9 2.2 4.8E-05 29.9 2.6 30 192-223 108-137 (140)
357 PF07163 Pex26: Pex26 protein; 78.8 33 0.00071 27.7 9.4 91 77-167 86-181 (309)
358 KOG1464 COP9 signalosome, subu 78.6 33 0.00071 27.6 13.3 155 52-206 40-218 (440)
359 KOG1308 Hsp70-interacting prot 78.2 1.6 3.5E-05 35.7 2.1 120 44-168 118-239 (377)
360 KOG1941 Acetylcholine receptor 77.6 39 0.00084 28.4 9.6 166 75-240 84-272 (518)
361 PF07163 Pex26: Pex26 protein; 77.6 36 0.00077 27.5 13.3 21 148-168 122-142 (309)
362 PRK10564 maltose regulon perip 77.5 7.3 0.00016 31.5 5.5 36 106-141 253-289 (303)
363 KOG2062 26S proteasome regulat 77.4 56 0.0012 30.2 11.2 28 217-244 213-240 (929)
364 KOG4648 Uncharacterized conser 77.3 15 0.00032 30.5 7.2 87 151-240 104-191 (536)
365 PF11846 DUF3366: Domain of un 77.1 13 0.00028 28.0 6.7 55 119-173 118-173 (193)
366 PF10579 Rapsyn_N: Rapsyn N-te 77.0 12 0.00025 23.7 5.1 16 52-67 19-34 (80)
367 PF06552 TOM20_plant: Plant sp 76.6 16 0.00036 27.2 6.7 78 54-140 50-138 (186)
368 PF14689 SPOB_a: Sensor_kinase 76.6 7 0.00015 23.3 4.1 31 213-243 22-52 (62)
369 PF10579 Rapsyn_N: Rapsyn N-te 76.6 10 0.00023 23.9 4.9 45 156-200 18-64 (80)
370 COG5159 RPN6 26S proteasome re 76.4 40 0.00086 27.4 10.1 45 84-128 13-64 (421)
371 PF07575 Nucleopor_Nup85: Nup8 75.3 22 0.00048 32.0 8.6 61 144-206 405-465 (566)
372 PF11663 Toxin_YhaV: Toxin wit 75.2 3 6.5E-05 29.2 2.5 29 53-83 109-137 (140)
373 PF10475 DUF2450: Protein of u 74.2 46 0.00099 27.1 11.7 107 82-199 106-217 (291)
374 PF14689 SPOB_a: Sensor_kinase 73.9 8.1 0.00018 23.0 3.9 26 181-206 25-50 (62)
375 PF10345 Cohesin_load: Cohesin 73.3 74 0.0016 29.0 18.7 185 56-241 38-252 (608)
376 PRK10564 maltose regulon perip 72.9 13 0.00027 30.2 5.8 43 176-218 253-296 (303)
377 KOG0890 Protein kinase of the 72.5 56 0.0012 34.4 10.9 145 82-236 1391-1540(2382)
378 cd00280 TRFH Telomeric Repeat 71.9 40 0.00086 25.3 7.8 67 55-124 85-158 (200)
379 COG5108 RPO41 Mitochondrial DN 71.8 48 0.001 30.3 9.3 75 114-191 33-115 (1117)
380 PF02847 MA3: MA3 domain; Int 70.8 21 0.00046 24.0 6.0 62 148-211 6-69 (113)
381 KOG2396 HAT (Half-A-TPR) repea 69.8 79 0.0017 27.9 19.0 92 176-268 456-553 (568)
382 KOG2297 Predicted translation 69.6 62 0.0013 26.6 12.7 19 215-233 322-340 (412)
383 smart00028 TPR Tetratricopepti 69.3 10 0.00022 17.5 3.5 24 78-101 5-28 (34)
384 KOG1464 COP9 signalosome, subu 69.3 59 0.0013 26.2 17.6 161 45-206 69-259 (440)
385 KOG0686 COP9 signalosome, subu 69.2 72 0.0016 27.3 13.8 161 75-243 151-333 (466)
386 PF10345 Cohesin_load: Cohesin 69.2 92 0.002 28.4 16.2 154 52-206 73-252 (608)
387 PF03745 DUF309: Domain of unk 68.6 23 0.00049 21.2 5.5 14 52-65 12-25 (62)
388 PRK11639 zinc uptake transcrip 68.5 33 0.00072 25.3 6.9 36 158-193 39-74 (169)
389 TIGR02710 CRISPR-associated pr 68.4 58 0.0013 27.6 8.9 52 118-169 139-196 (380)
390 PHA02875 ankyrin repeat protei 67.7 52 0.0011 28.1 9.0 45 190-238 176-223 (413)
391 KOG1586 Protein required for f 67.4 60 0.0013 25.6 14.0 17 191-207 166-182 (288)
392 COG5108 RPO41 Mitochondrial DN 67.1 49 0.0011 30.2 8.5 75 79-156 33-115 (1117)
393 PRK09462 fur ferric uptake reg 66.6 43 0.00093 24.0 7.1 59 135-194 8-67 (148)
394 COG5187 RPN7 26S proteasome re 66.4 70 0.0015 26.1 10.9 118 109-228 115-241 (412)
395 PRK11639 zinc uptake transcrip 66.3 50 0.0011 24.3 7.8 56 67-123 19-74 (169)
396 PF11817 Foie-gras_1: Foie gra 66.2 36 0.00078 26.8 7.2 62 145-206 179-245 (247)
397 KOG1258 mRNA processing protei 66.0 1E+02 0.0022 27.7 18.9 177 44-228 300-489 (577)
398 TIGR02508 type_III_yscG type I 65.9 37 0.00081 22.7 9.9 64 187-256 47-110 (115)
399 KOG4234 TPR repeat-containing 65.5 60 0.0013 24.9 9.1 91 82-173 103-197 (271)
400 PF11838 ERAP1_C: ERAP1-like C 65.5 74 0.0016 26.0 14.0 111 88-203 144-261 (324)
401 TIGR01228 hutU urocanate hydra 65.0 15 0.00032 31.9 4.9 179 52-245 207-424 (545)
402 PF09454 Vps23_core: Vps23 cor 64.6 20 0.00044 21.7 4.2 49 177-226 6-54 (65)
403 KOG2297 Predicted translation 64.6 79 0.0017 26.0 13.0 118 70-199 219-341 (412)
404 PF03745 DUF309: Domain of unk 63.9 29 0.00063 20.7 5.4 46 86-131 11-61 (62)
405 PF04190 DUF410: Protein of un 63.8 74 0.0016 25.4 15.2 70 63-132 38-113 (260)
406 KOG4567 GTPase-activating prot 63.5 66 0.0014 26.4 7.9 73 94-171 263-345 (370)
407 KOG1258 mRNA processing protei 63.4 1.1E+02 0.0025 27.4 18.1 174 73-250 296-477 (577)
408 cd08812 CARD_RIG-I_like Caspas 63.3 38 0.00082 21.9 7.5 49 216-264 36-85 (88)
409 PF13934 ELYS: Nuclear pore co 62.9 71 0.0015 24.9 11.6 106 112-228 79-186 (226)
410 PF01347 Vitellogenin_N: Lipop 62.5 1.2E+02 0.0027 27.5 18.0 197 44-244 349-570 (618)
411 PF11817 Foie-gras_1: Foie gra 62.4 62 0.0013 25.5 7.8 59 112-170 181-244 (247)
412 PRK09462 fur ferric uptake reg 62.4 55 0.0012 23.4 7.7 59 65-124 8-67 (148)
413 PF08870 DUF1832: Domain of un 61.8 33 0.00071 23.4 5.3 35 158-193 62-96 (113)
414 KOG1114 Tripeptidyl peptidase 61.6 1.6E+02 0.0034 28.5 13.2 102 121-230 1159-1283(1304)
415 PF10475 DUF2450: Protein of u 61.5 87 0.0019 25.4 9.0 112 114-236 103-219 (291)
416 PF07575 Nucleopor_Nup85: Nup8 61.0 26 0.00056 31.6 6.1 85 86-172 371-466 (566)
417 KOG4507 Uncharacterized conser 60.7 87 0.0019 28.3 8.7 102 52-155 620-721 (886)
418 PF12796 Ank_2: Ankyrin repeat 60.6 25 0.00055 22.1 4.6 13 201-213 74-86 (89)
419 PRK09857 putative transposase; 60.5 70 0.0015 26.1 7.9 29 185-213 246-274 (292)
420 cd08326 CARD_CASP9 Caspase act 60.2 43 0.00093 21.4 6.6 61 198-262 18-78 (84)
421 PHA02875 ankyrin repeat protei 59.9 54 0.0012 28.0 7.7 176 45-238 4-189 (413)
422 cd07153 Fur_like Ferric uptake 58.9 26 0.00055 23.7 4.6 42 152-193 8-49 (116)
423 PF09454 Vps23_core: Vps23 cor 58.4 30 0.00065 20.9 4.2 48 72-120 6-53 (65)
424 PF11838 ERAP1_C: ERAP1-like C 58.4 1E+02 0.0022 25.2 16.8 118 115-239 135-262 (324)
425 PF08424 NRDE-2: NRDE-2, neces 58.3 1.1E+02 0.0023 25.4 17.5 138 71-210 16-185 (321)
426 TIGR03184 DNA_S_dndE DNA sulfu 58.2 43 0.00093 22.5 5.3 36 158-193 61-98 (105)
427 cd07153 Fur_like Ferric uptake 58.0 37 0.00081 22.9 5.3 44 81-124 7-50 (116)
428 PF10366 Vps39_1: Vacuolar sor 57.7 41 0.00089 22.7 5.2 26 112-137 42-67 (108)
429 PRK09687 putative lyase; Provi 57.5 1E+02 0.0022 24.9 23.1 188 56-260 53-250 (280)
430 PF14669 Asp_Glu_race_2: Putat 57.4 83 0.0018 23.9 11.7 172 68-239 2-206 (233)
431 PF07678 A2M_comp: A-macroglob 57.1 65 0.0014 25.4 7.1 80 126-207 116-220 (246)
432 PF04097 Nic96: Nup93/Nic96; 56.7 1.5E+02 0.0032 27.2 10.1 164 52-243 271-456 (613)
433 PF12926 MOZART2: Mitotic-spin 56.1 52 0.0011 21.2 8.1 43 95-137 29-71 (88)
434 cd08789 CARD_IPS-1_RIG-I Caspa 55.7 52 0.0011 21.0 6.2 48 214-262 32-79 (84)
435 COG5159 RPN6 26S proteasome re 55.4 1.1E+02 0.0025 24.9 10.4 127 115-241 9-152 (421)
436 PF09670 Cas_Cas02710: CRISPR- 55.4 1.3E+02 0.0028 25.6 12.2 56 82-138 139-198 (379)
437 KOG2659 LisH motif-containing 55.1 99 0.0022 24.1 9.2 100 103-204 20-128 (228)
438 PF01475 FUR: Ferric uptake re 55.1 34 0.00073 23.4 4.7 45 79-123 12-56 (120)
439 KOG4567 GTPase-activating prot 54.4 1.1E+02 0.0024 25.2 7.8 42 131-172 265-306 (370)
440 KOG0159 Cytochrome P450 CYP11/ 54.4 1.6E+02 0.0034 26.2 9.3 49 88-138 312-360 (519)
441 PF01475 FUR: Ferric uptake re 53.9 21 0.00047 24.4 3.5 38 152-189 15-52 (120)
442 PF14840 DNA_pol3_delt_C: Proc 53.8 20 0.00043 25.0 3.3 32 47-78 4-36 (125)
443 cd08323 CARD_APAF1 Caspase act 53.7 58 0.0013 21.0 6.6 60 198-261 16-75 (86)
444 KOG2582 COP9 signalosome, subu 52.8 1E+02 0.0022 26.0 7.5 54 86-139 289-346 (422)
445 PF15469 Sec5: Exocyst complex 52.5 95 0.002 23.1 9.6 23 115-137 92-114 (182)
446 cd08332 CARD_CASP2 Caspase act 52.0 64 0.0014 20.9 6.8 59 198-260 22-80 (90)
447 smart00544 MA3 Domain in DAP-5 52.0 70 0.0015 21.4 8.8 61 148-210 6-68 (113)
448 PF02847 MA3: MA3 domain; Int 51.6 41 0.00088 22.6 4.6 60 113-174 6-67 (113)
449 COG2909 MalT ATP-dependent tra 51.6 2.2E+02 0.0049 27.1 16.7 193 44-239 460-684 (894)
450 KOG4642 Chaperone-dependent E3 51.5 1.2E+02 0.0026 24.0 11.1 115 52-170 23-143 (284)
451 KOG1498 26S proteasome regulat 51.4 1.6E+02 0.0034 25.2 16.3 184 52-243 25-241 (439)
452 PF02607 B12-binding_2: B12 bi 51.1 25 0.00054 21.8 3.2 39 47-85 8-47 (79)
453 PHA00425 DNA packaging protein 50.9 61 0.0013 20.4 6.4 53 52-116 12-64 (88)
454 smart00386 HAT HAT (Half-A-TPR 50.8 28 0.00061 16.5 4.0 28 53-81 1-28 (33)
455 COG2178 Predicted RNA-binding 50.8 1.1E+02 0.0024 23.3 9.4 21 81-101 36-56 (204)
456 KOG2066 Vacuolar assembly/sort 50.6 2.2E+02 0.0048 26.8 14.0 96 52-156 369-467 (846)
457 PRK12798 chemotaxis protein; R 50.6 1.6E+02 0.0036 25.3 19.0 195 48-245 120-326 (421)
458 PF00244 14-3-3: 14-3-3 protei 50.5 1.2E+02 0.0026 23.8 8.8 33 52-84 14-46 (236)
459 PF11123 DNA_Packaging_2: DNA 49.5 62 0.0013 20.1 6.3 36 52-88 10-45 (82)
460 PRK09857 putative transposase; 48.8 1.5E+02 0.0032 24.2 9.0 66 182-248 209-274 (292)
461 PRK13184 pknD serine/threonine 48.8 2.6E+02 0.0057 27.2 16.6 187 52-247 669-873 (932)
462 PF08424 NRDE-2: NRDE-2, neces 48.5 1.6E+02 0.0034 24.4 14.0 119 55-175 47-185 (321)
463 PF09868 DUF2095: Uncharacteri 48.4 77 0.0017 21.6 5.1 34 116-150 68-101 (128)
464 PF10366 Vps39_1: Vacuolar sor 48.3 83 0.0018 21.2 7.7 26 147-172 42-67 (108)
465 PF12862 Apc5: Anaphase-promot 48.2 74 0.0016 20.6 7.2 15 86-100 53-67 (94)
466 KOG4814 Uncharacterized conser 48.0 2.3E+02 0.0049 26.1 9.8 91 44-136 358-455 (872)
467 PF08870 DUF1832: Domain of un 47.7 89 0.0019 21.3 5.8 89 126-228 6-96 (113)
468 PF12926 MOZART2: Mitotic-spin 46.5 79 0.0017 20.4 8.0 43 200-242 29-71 (88)
469 TIGR03581 EF_0839 conserved hy 45.8 92 0.002 24.1 5.8 83 54-136 136-235 (236)
470 COG0790 FOG: TPR repeat, SEL1 45.7 1.6E+02 0.0034 23.6 21.3 189 52-253 54-276 (292)
471 COG5116 RPN2 26S proteasome re 45.5 2.4E+02 0.0051 25.7 9.1 66 181-246 174-240 (926)
472 smart00804 TAP_C C-terminal do 45.2 27 0.00059 20.9 2.5 31 44-74 29-61 (63)
473 KOG0376 Serine-threonine phosp 44.8 55 0.0012 28.5 5.1 98 52-154 17-115 (476)
474 COG5187 RPN7 26S proteasome re 44.8 1.7E+02 0.0038 23.9 11.5 95 73-171 114-219 (412)
475 PF12862 Apc5: Anaphase-promot 44.5 86 0.0019 20.3 6.9 53 190-242 9-69 (94)
476 COG2137 OraA Uncharacterized p 44.5 1.3E+02 0.0028 22.4 12.4 131 74-228 20-151 (174)
477 smart00638 LPD_N Lipoprotein N 44.4 2.4E+02 0.0053 25.4 21.8 194 44-243 313-525 (574)
478 COG4003 Uncharacterized protei 44.1 83 0.0018 20.0 4.7 24 116-139 38-61 (98)
479 PF14669 Asp_Glu_race_2: Putat 43.9 1.4E+02 0.0031 22.7 11.4 153 52-204 25-206 (233)
480 PF08311 Mad3_BUB1_I: Mad3/BUB 43.5 1.1E+02 0.0024 21.2 8.7 43 127-169 81-124 (126)
481 PRK13342 recombination factor 43.5 2.1E+02 0.0046 24.6 18.4 65 147-211 230-302 (413)
482 cd08330 CARD_ASC_NALP1 Caspase 43.3 85 0.0018 19.9 6.7 58 197-258 16-73 (82)
483 PF08311 Mad3_BUB1_I: Mad3/BUB 43.1 1.1E+02 0.0024 21.2 9.5 42 197-238 81-123 (126)
484 PRK14958 DNA polymerase III su 42.5 2.5E+02 0.0054 25.1 12.3 74 67-143 193-279 (509)
485 COG2178 Predicted RNA-binding 42.1 1.5E+02 0.0033 22.5 7.6 33 35-67 24-57 (204)
486 PRK14700 recombination factor 41.4 2E+02 0.0043 23.6 11.7 22 46-67 72-93 (300)
487 PF09477 Type_III_YscG: Bacter 40.7 1.2E+02 0.0025 20.7 9.8 18 52-69 19-36 (116)
488 PF12816 Vps8: Golgi CORVET co 40.7 36 0.00078 25.8 3.2 60 143-207 21-80 (196)
489 KOG2063 Vacuolar assembly/sort 40.2 3.5E+02 0.0076 26.1 17.4 184 44-227 507-745 (877)
490 KOG1166 Mitotic checkpoint ser 39.8 1.9E+02 0.0042 28.1 8.2 65 155-219 89-154 (974)
491 COG0790 FOG: TPR repeat, SEL1 39.8 2E+02 0.0043 23.1 23.7 115 54-174 92-221 (292)
492 KOG4507 Uncharacterized conser 39.4 95 0.0021 28.1 5.7 103 141-244 604-706 (886)
493 KOG1839 Uncharacterized protei 39.3 4.1E+02 0.0089 26.7 11.3 155 84-239 942-1124(1236)
494 TIGR03581 EF_0839 conserved hy 39.3 1.4E+02 0.0031 23.1 6.0 82 90-171 137-235 (236)
495 PF14929 TAF1_subA: TAF RNA Po 39.1 3E+02 0.0064 24.9 16.3 138 87-229 322-470 (547)
496 KOG0403 Neoplastic transformat 37.8 1.5E+02 0.0033 25.9 6.5 77 113-194 513-589 (645)
497 KOG4642 Chaperone-dependent E3 37.5 2.1E+02 0.0046 22.8 10.6 117 84-204 20-142 (284)
498 PF02631 RecX: RecX family; I 37.4 1.3E+02 0.0029 20.5 9.2 97 126-228 9-106 (121)
499 TIGR02710 CRISPR-associated pr 37.1 2.7E+02 0.0058 23.8 10.9 56 44-99 134-196 (380)
500 KOG0687 26S proteasome regulat 36.3 2.6E+02 0.0056 23.4 13.6 96 110-207 105-209 (393)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.6e-41 Score=304.74 Aligned_cols=253 Identities=14% Similarity=0.203 Sum_probs=152.2
Q ss_pred CCCCcccccccCCchh----hHHHHHHHhhcC--------chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036275 16 RAPHSWNFNYLPYPSH----FMLINFLLLQHT--------PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLL 81 (271)
Q Consensus 16 ~~~~~~~~~~~~~~~~----~~~~~f~~~~~~--------y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 81 (271)
++...|+.++..+... .+..+|+.|... |+.+|.+| .|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI 549 (1060)
T PLN03218 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444555555554444 255566666532 66666666 666666666666666666666666666666
Q ss_pred HHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275 82 TAYSKTGNVAKCEGVINQMHK--SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159 (271)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 159 (271)
.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|++|+..+|+.+|.+|++.|+
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 666666666666666666654 355666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 160 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 630 ~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhcc----cchhHHHHHHHhhccccccchhhh
Q 036275 240 MHKDM----KTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 240 ~~~~~----~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
|.+.+ ...++.++.+|++.|+.++|++.|
T Consensus 710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 65432 223455566666666666665554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.2e-41 Score=304.48 Aligned_cols=254 Identities=19% Similarity=0.272 Sum_probs=227.7
Q ss_pred CCCCcccccccCCchh----hHHHHHHHhhcC--------chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036275 16 RAPHSWNFNYLPYPSH----FMLINFLLLQHT--------PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLL 81 (271)
Q Consensus 16 ~~~~~~~~~~~~~~~~----~~~~~f~~~~~~--------y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 81 (271)
++...|+.++..+... .+..+|+.|... ||.+|.+| .|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4555666666655544 477888888764 99999999 999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh--CCCCCChhhHHHHHHHHHcCCC
Q 036275 82 TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--GSYAADISTYNILINIYGRGGF 159 (271)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~ 159 (271)
.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999976 5788999999999999999999
Q ss_pred HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 160 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
+++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccc----hhHHHHHHHhhccccccchhhhh
Q 036275 240 MHKDMKT----ALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 240 ~~~~~~~----~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
|.+.+.. .+..++++|++.|+.++|.+.|-
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9987654 46778899999999999988763
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-38 Score=283.90 Aligned_cols=249 Identities=16% Similarity=0.201 Sum_probs=211.6
Q ss_pred hcCCCCcccccccCCchh----hHHHHHHHhhcC----chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036275 14 AQRAPHSWNFNYLPYPSH----FMLINFLLLQHT----PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA 83 (271)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~----~~~~~f~~~~~~----y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 83 (271)
...+...|+.++..|... .|..+|+.|+.. ||++|.+| .|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445667777777777755 488899999876 99999999 99999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 036275 84 YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163 (271)
Q Consensus 84 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 163 (271)
|++.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999999998854 6888999999999999999999
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 164 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
.++|++|.+.|+.||..||+.+|.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++.++.+.|++++|.+++++|..
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~ 490 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999976 68889988899999999888999988888887742
Q ss_pred -cccchhHHHHHHHhhccccccchh
Q 036275 243 -DMKTALPIYFNLYGEKGVARSNLG 266 (271)
Q Consensus 243 -~~~~~~~~~~~~~~~~G~~~~a~~ 266 (271)
.+...+..++.+|...|+.+.|..
T Consensus 491 ~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 491 KPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 223345555555555555554433
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-38 Score=283.41 Aligned_cols=253 Identities=17% Similarity=0.202 Sum_probs=229.1
Q ss_pred hhcCCCCcccccccCCchh----hHHHHHHHhhcC----chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036275 13 VAQRAPHSWNFNYLPYPSH----FMLINFLLLQHT----PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLT 82 (271)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~----~~~~~f~~~~~~----y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 82 (271)
+..++...|+.++..|... .|+.+|+.|+.. ||++|.+| .|++++|+++|++|.+.|+.|+..+|+.++.
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 3456777788888777765 488999999986 99999999 9999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 036275 83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162 (271)
Q Consensus 83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 162 (271)
+|++.|..+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|.+ +|..+||++|.+|++.|+.++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999999999999999999998854 588899999999999999999
Q ss_pred HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 163 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccchhHHHHHHHhhccccccchhhhh
Q 036275 243 DMKTALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 243 ~~~~~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
.+...++.++.+|++.|+.++|++.|-
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 888889999999999999999988763
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.9e-38 Score=285.96 Aligned_cols=253 Identities=17% Similarity=0.159 Sum_probs=240.6
Q ss_pred hhcCCCCcccccccCCchh----hHHHHHHHhhcC----chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036275 13 VAQRAPHSWNFNYLPYPSH----FMLINFLLLQHT----PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLT 82 (271)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~----~~~~~f~~~~~~----y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 82 (271)
+..++...++.++..+... .|..+|++|+.. ||++|.+| .|++++|+++|++|.+.|+.||..||+.++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 3456777788888877655 588999999886 99999999 9999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 036275 83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162 (271)
Q Consensus 83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 162 (271)
+|++.|+.+.+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~ 372 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDK 372 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999995 4789999999999999999999
Q ss_pred HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 163 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|.+.|++++|.++|++|.+
T Consensus 373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHhhccccccchhhhh
Q 036275 243 DMKTALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 243 ~~~~~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
.+...++.++..|.+.|+.++|++.|.
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999998773
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-37 Score=279.29 Aligned_cols=249 Identities=18% Similarity=0.220 Sum_probs=234.5
Q ss_pred CCCcccccccCCchh----hHHHHHHHhhcC----chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036275 17 APHSWNFNYLPYPSH----FMLINFLLLQHT----PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK 86 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~----~~~~~f~~~~~~----y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 86 (271)
+...++.++..+... .+..+|+.|+.. ||++|.+| .|++++|+++|++|...|+.||..||+.++.+|+.
T Consensus 120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred CchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 344455666555443 488999999986 99999999 99999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 036275 87 TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166 (271)
Q Consensus 87 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 166 (271)
.+++..+.+++..|.+.|+.||..+++++|.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999964 6889999999999999999999999
Q ss_pred HHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 167 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
|++|...|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhccccccchhhhh
Q 036275 247 ALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 247 ~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
.++.++.+|.+.|+.++|++.|.
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999998874
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=6.8e-17 Score=136.07 Aligned_cols=221 Identities=12% Similarity=0.076 Sum_probs=150.4
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT----FVINSMLN 117 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~ 117 (271)
|..+...| .|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++++.+.+..++. ..+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34445555 778888888888877653 456677777888888888888888888877766433221 23455666
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036275 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 197 (271)
.+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.++|+++...+......+++.++.+|...|++++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 7777888888888888877653 334566777778888888888888888887765322224567777788888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH--HHHHHHhh---ccccccchhhh
Q 036275 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP--IYFNLYGE---KGVARSNLGQY 268 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~---~G~~~~a~~~~ 268 (271)
|...++++.+. .|+...+..+...+.+.|++++|..+++++.+..+.... .++..+.. .|..+++++.+
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 88888887765 356666677777788888888888888877766544332 23444332 44666666544
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=1.5e-16 Score=133.99 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=131.7
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 118 (271)
|..+...+ .|++++|..+++.+.+....++ ...+..+...|.+.|++++|..+|+++.+.. +.+..++..++..
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 150 (389)
T PRK11788 72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEI 150 (389)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 44444444 6677777777766665431111 2345666666666677777777776666542 2345566666677
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 036275 119 YGRLGQFEKMEEVLTAMEKGSYAAD----ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194 (271)
Q Consensus 119 ~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 194 (271)
+.+.|++++|.+.++.+.+.+-.+. ...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|+
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCC
Confidence 7777777777777776665432111 1134455566666777777777777666542 1234456666666777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch--hHHHHHHHhhccccccchhhh
Q 036275 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA--LPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 195 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+++|.+.++++.+.+......++..+..++...|++++|...++++.+..+.. ...+..+|.+.|+.++|+..+
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777777776654312123455666666777777777777777766543322 233455566777777766654
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.72 E-value=1e-14 Score=134.73 Aligned_cols=187 Identities=13% Similarity=0.092 Sum_probs=87.4
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|.+.|+++.+.+ +.+...+..+..++.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|.++
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444432 2334444444444444444444444444444432 12334444444444444444444444
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 211 (271)
++.+.+.. +.+...+..+...+...|++++|.+.|+.+... .|+..++..+...+...|++++|.+.++.+.+.. +
T Consensus 692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~ 767 (899)
T TIGR02917 692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-P 767 (899)
T ss_pred HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 44444432 333444444555555555555555555554443 2333444444455555555555555555544432 3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
.+...+..+...+...|+.++|.++|+++.+..
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 344444455555555555555555555554443
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.71 E-value=1.9e-14 Score=132.94 Aligned_cols=217 Identities=12% Similarity=0.135 Sum_probs=127.6
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
.+...| .|++++|.++++.+.+.. +.+...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 344444 555666666665555433 4455556666666666666666666666655543 224445555666666666
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 203 (271)
++++|..+++++.+.. +.+..++..++..+...|++++|.++++.+...+ +.+...+..+...+...|++++|.+.++
T Consensus 650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666655542 3345566666666666666666666666665543 2345556666666666777777777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 204 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~ 268 (271)
.+.+.+ |+..++..+..++...|++++|.+.++++.+..+... ..+..+|...|+.++|++.|
T Consensus 728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 666543 4445566666666777777777777776665544332 23345566777777776655
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.60 E-value=2e-12 Score=115.27 Aligned_cols=151 Identities=7% Similarity=-0.006 Sum_probs=86.6
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH----HHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK----MEGLFQSLPAKRLKPDVVTWTSRLAAYS 190 (271)
Q Consensus 115 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~ 190 (271)
+...+...|++++|+..+++..+.. +.+...+..+...+...|++++ |...|++..... +.+...+..+...+.
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 3444455555555555555555442 3344555556666666666654 566666655542 123456666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccccccchhh
Q 036275 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~ 267 (271)
..|++++|...+++..+.. +-+...+..+..++...|++++|...++++.+..+..... ...++...|+.++|++.
T Consensus 296 ~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777777666542 2234455556666667777777777777666554443222 23446677777777665
Q ss_pred h
Q 036275 268 Y 268 (271)
Q Consensus 268 ~ 268 (271)
|
T Consensus 375 l 375 (656)
T PRK15174 375 F 375 (656)
T ss_pred H
Confidence 5
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.59 E-value=2.3e-12 Score=114.72 Aligned_cols=221 Identities=12% Similarity=-0.015 Sum_probs=174.1
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|+.+-..+ .|++++|+..|++..+.. +-....|..+...+...|++++|...|++..+.. +-+...|..+...+..
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 44444444 899999999999998765 4457788899999999999999999999998874 3357788899999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..... +-+...|+.+...+...|++++|.+.
T Consensus 412 ~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred cCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999998863 4567788889999999999999999999988652 23577899999999999999999999
Q ss_pred HHHHHHCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275 202 FEEMIDAGCYPDG------GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 202 ~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~ 268 (271)
|++..+..-..+. ..+......+...|++++|.+++++..+..+... ..+..+|...|+.++|+..|
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9998775311111 1112222234456999999999999876655443 44567799999999998876
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.59 E-value=3.1e-12 Score=114.09 Aligned_cols=212 Identities=9% Similarity=-0.009 Sum_probs=117.1
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 555555555555554432 333444445555555555555555555544433221 11122122 224455555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR----CLEIFEEMID 207 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~ 207 (271)
++.+.+..-.++......+..++.+.|++++|...+++..... +.+...+..+...+...|++++ |...+++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 5555443211223333444555666666666666666665542 2235556666677777777764 6777777666
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275 208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 208 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~ 268 (271)
.. +.+...+..+...+...|++++|...+++..+..+... ..+..+|.+.|+.++|++.|
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 42 33456677777777777888888888777776554433 33455677788888877765
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.56 E-value=8.3e-12 Score=97.05 Aligned_cols=196 Identities=9% Similarity=0.045 Sum_probs=161.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
+..+...+ .|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Confidence 44555555 999999999999998765 55688888999999999999999999999988753 356678888899999
Q ss_pred cCCHhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSY-AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
.|++++|.+.+++..+... +.....+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999887532 2345667778899999999999999999988753 2246678888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 201 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
.+++..+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99998876 3456677777888888999999999998887654
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=7.8e-14 Score=112.22 Aligned_cols=218 Identities=16% Similarity=0.132 Sum_probs=107.9
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+.... .++++.|.+.++++.+.+ +-++..+..++.. ...+++++|.+++.+..+. .++...+..++..+..
T Consensus 47 ~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 47 WRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred cccccccccccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHH
Confidence 44444444 899999999999998876 3367778788877 7889999999998877665 3566777888899999
Q ss_pred cCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCL 199 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~ 199 (271)
.++++++.++++.+.+.. .+.+...|..+...+.+.|+.++|.+.+++..+. .| |......++..+...|+.+++.
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~ 200 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAR 200 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHH
Confidence 999999999999977542 3467788889999999999999999999999886 45 4778888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 200 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~ 268 (271)
++++...... +.|...+..+..++...|+.++|..++++..+..+..+ ..+.+++...|+.++|.+.+
T Consensus 201 ~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 201 EALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9998887653 45556778889999999999999999999988665544 44667799999999998764
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=7.9e-12 Score=111.33 Aligned_cols=213 Identities=12% Similarity=-0.019 Sum_probs=172.4
Q ss_pred hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHH
Q 036275 52 SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 129 (271)
.+++++|.+.|++..+.+ .+.....|..+...+...|++++|+..+++..+.. +-....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 468999999999998765 23456778888899999999999999999998873 224567888899999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209 (271)
Q Consensus 130 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 209 (271)
..|+...+.. +.+..+|..+...+...|++++|.+.|++..... +.+...+..+...+.+.|++++|...+++.....
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998863 4568899999999999999999999999988763 2246678888899999999999999999988752
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH----------HHHHHhhccccccchhhh
Q 036275 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI----------YFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 210 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~~~G~~~~a~~~~ 268 (271)
+-+...+..+...+...|++++|.+.|++..+..+..... ....|...|++++|++.+
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4457788889999999999999999999987654322111 112344468888887765
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=7.9e-12 Score=100.92 Aligned_cols=209 Identities=17% Similarity=0.277 Sum_probs=152.3
Q ss_pred hHHHHHHHhhcC---chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036275 32 FMLINFLLLQHT---PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK 106 (271)
Q Consensus 32 ~~~~~f~~~~~~---y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 106 (271)
.|..+|+..|+. |.++|.+. --..++|.+++++-....++.+..+||.+|.+-+-..+ .++..+|......
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 466788888886 99999998 77899999999999888778899999999987665433 6788899999999
Q ss_pred CCHHHHHHHHHHHHccCCHhH----HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH-HHHHHHhc----hhCCCCC
Q 036275 107 PDTFVINSMLNLYGRLGQFEK----MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK-MEGLFQSL----PAKRLKP 177 (271)
Q Consensus 107 ~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m----~~~g~~~ 177 (271)
||..|+|+++.+..+.|+++. |.+++.+|++.|+.|+..+|..+|..+++.++..+ +..++.++ ..+.++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 45778889999999999999999999998888754 33333332 2222222
Q ss_pred ----CHHHHHHHHHHHHhcCCHH------------------------------------------HHHHHHHHHHHCCCC
Q 036275 178 ----DVVTWTSRLAAYSRKKLYR------------------------------------------RCLEIFEEMIDAGCY 211 (271)
Q Consensus 178 ----~~~~~~~li~~~~~~g~~~------------------------------------------~a~~~~~~m~~~~~~ 211 (271)
+..-|...+..|.+..|.+ .....++.|+-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 1223344444444444444 444444444444445
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
|+..+...++++....|.++-.-+++.++..-|
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 777777778888777788877777777776655
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.51 E-value=2.5e-11 Score=111.52 Aligned_cols=217 Identities=11% Similarity=0.007 Sum_probs=136.9
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
|..+-.++ .+++++|+..|.+..... |+......+...+...|++++|...|+++... +|+...+..+..++.+.
T Consensus 480 ~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~ 555 (987)
T PRK09782 480 WNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC
Confidence 44455555 667777777776666543 44443333444445677777777777776544 34444455566667777
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 202 (271)
|+.++|...++...+.. +.+...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.|++++|...+
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777776653 233333333344444557777777777777665 456667777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccccccchhhh
Q 036275 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 203 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~~ 268 (271)
++..+.. +-+...+..+..++...|+.++|...+++..+..+..... +-.+|...|+.++|+..|
T Consensus 633 ~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 633 RAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777653 3345556666666777777777777777776655544333 344577777777776654
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=2e-13 Score=109.80 Aligned_cols=212 Identities=12% Similarity=0.066 Sum_probs=92.6
Q ss_pred hcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 130 (271)
.|++++|+++++...... .+.+...|..+.......++++.|...++++...+.. ++..+..++.. ...+++++|.+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence 999999999997655443 2446666667777788899999999999999987644 66677778877 79999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 209 (271)
+++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+++.++..
T Consensus 99 ~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 99 LAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred cccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99887665 3567778889999999999999999999977532 34577788889999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc---ccchhHHHHHHHhhccccccchhhh
Q 036275 210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD---MKTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 210 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+-|......++..+...|+.+++.++++...+. ++..+..+..+|...|+.++|+..|
T Consensus 177 -P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 177 -PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 335777888999999999999988888887665 3555677888999999999999876
No 20
>PF13041 PPR_2: PPR repeat family
Probab=99.49 E-value=1.1e-13 Score=80.57 Aligned_cols=47 Identities=26% Similarity=0.515 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 119 (271)
|..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 21
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.8e-11 Score=95.40 Aligned_cols=228 Identities=13% Similarity=0.100 Sum_probs=180.0
Q ss_pred HHhhcCchHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHH
Q 036275 38 LLLQHTPNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT---FVIN 113 (271)
Q Consensus 38 ~~~~~~y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~ 113 (271)
++++.+|-.=+..+ +++.++|.+.|-+|.+.+ +-+..+--+|.+.|-+.|..|.|+.+.+.+.++.--+.. ...-
T Consensus 33 ~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 33 NRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred hhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34555577777777 999999999999998864 556677778999999999999999999999886322221 2345
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH----HHHHHHHHHH
Q 036275 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV----VTWTSRLAAY 189 (271)
Q Consensus 114 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~ 189 (271)
.|.+-|...|-+|.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 57778889999999999999998865 345677889999999999999999999998887655443 3466777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch----hHHHHHHHhhccccccch
Q 036275 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA----LPIYFNLYGEKGVARSNL 265 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~G~~~~a~ 265 (271)
....+.+.|..++.+..+.+ +-....-..+.+.....|++++|.+.++.+.+.++.- .+.+..+|...|+.++.+
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 191 LASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 78899999999999988764 2334444556677889999999999999999887654 455777899999988776
Q ss_pred hhh
Q 036275 266 GQY 268 (271)
Q Consensus 266 ~~~ 268 (271)
...
T Consensus 270 ~fL 272 (389)
T COG2956 270 NFL 272 (389)
T ss_pred HHH
Confidence 543
No 22
>PF13041 PPR_2: PPR repeat family
Probab=99.49 E-value=1.3e-13 Score=80.22 Aligned_cols=50 Identities=34% Similarity=0.549 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156 (271)
Q Consensus 107 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 156 (271)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999985
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=8.9e-12 Score=100.63 Aligned_cols=194 Identities=15% Similarity=0.214 Sum_probs=154.1
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHH-HHHHHHHHHC----------------
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK--TGNVAKC-EGVINQMHKS---------------- 103 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a-~~~~~~m~~~---------------- 103 (271)
=|.|+... +|.+.++.-+|+.|++.|++.+...--.|+...+- ..++.-+ .+.|-.|...
T Consensus 119 E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL 198 (625)
T KOG4422|consen 119 ENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADL 198 (625)
T ss_pred hhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHH
Confidence 67788888 99999999999999999988888777666655432 2222211 1112222211
Q ss_pred ---CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275 104 ---GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180 (271)
Q Consensus 104 ---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 180 (271)
-.+-+..|+.++|.+.|+--..+.|.+++++-.......+..+||.+|.+-+-... .+++.+|....++||..
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchH
Confidence 13557789999999999999999999999999988778999999999987654433 78899999999999999
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHHH
Q 036275 181 TWTSRLAAYSRKKLYRR----CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ-VTTLVRTMH 241 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~ 241 (271)
|+|+++.+..+.|+++. |.+++.+|.+-|+.|...+|..+|..+.+.++..+ +..++.++.
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 99999999999998874 57788999999999999999999999988888754 445555554
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.46 E-value=1.1e-11 Score=104.35 Aligned_cols=210 Identities=13% Similarity=0.146 Sum_probs=152.8
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHhHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD-TFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~ 130 (271)
.+.+++|+..|.+..... +.....+..+...|...|..+.|+..|++.++. +|+ ...|+.|..++-..|+.++|.+
T Consensus 265 ~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHH
Confidence 556666666665554442 334555666666666777777777777777665 333 4568888888888888888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 209 (271)
.+....... +....+.+.|..+|...|.+++|..+|....+- .|. ...++.|...|-++|++++|...+++...-
T Consensus 342 cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI- 417 (966)
T KOG4626|consen 342 CYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI- 417 (966)
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-
Confidence 888777652 334677788888888888888888888877654 344 356788888888888888888888887763
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhhh
Q 036275 210 CYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 210 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~~ 269 (271)
.|+ ...|+.+-..|...|+.+.|.+.+.+....++..- ..+..+|..+|...+|++.|-
T Consensus 418 -~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 418 -KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred -CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 565 46788888888888888888888888877776543 446667999999999988763
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1.8e-10 Score=89.50 Aligned_cols=194 Identities=10% Similarity=0.082 Sum_probs=157.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275 71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150 (271)
Q Consensus 71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 150 (271)
......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 3456778889999999999999999999998764 3356778889999999999999999999998864 4566788889
Q ss_pred HHHHHcCCCHHHHHHHHHhchhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036275 151 INIYGRGGFIEKMEGLFQSLPAKRLK-PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229 (271)
Q Consensus 151 i~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 229 (271)
...+...|++++|.+.+++....... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 99999999999999999998764322 234567778889999999999999999988763 3356778888899999999
Q ss_pred HHHHHHHHHHHHhcccch---hHHHHHHHhhccccccchhh
Q 036275 230 IEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~ 267 (271)
+++|..++++..+..+.. ......++...|+.++|...
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999987653322 23345667888888887654
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=9.3e-11 Score=98.85 Aligned_cols=210 Identities=8% Similarity=-0.023 Sum_probs=139.2
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHM--LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 129 (271)
.|+++.|.+.|.++.+. .|+..... .....+...|+++.|...++++.+... -+......+...|.+.|++++|.
T Consensus 131 ~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 131 RGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHH
Confidence 56666666666665543 23332222 223455555666666666666655542 24445555556666666666666
Q ss_pred HHHHHHHhCCC-----------------------------------------CCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 036275 130 EVLTAMEKGSY-----------------------------------------AADISTYNILINIYGRGGFIEKMEGLFQ 168 (271)
Q Consensus 130 ~~~~~m~~~~~-----------------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 168 (271)
+++..+.+.+. +.++.....+...+...|+.++|.++++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555544321 2345556677888889999999999998
Q ss_pred hchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 169 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
+..+. .|+... .++.+....++.+++.+..+...+.. +-|...+..+.+.|...+++++|.+.|+...+..+...
T Consensus 288 ~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 288 DGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 88774 455422 23344456689999999999888763 34556677889999999999999999999988766654
Q ss_pred H--HHHHHHhhccccccchhhhh
Q 036275 249 P--IYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 249 ~--~~~~~~~~~G~~~~a~~~~~ 269 (271)
. .+..++.+.|+.++|.+.|-
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 57788999999999988763
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.43 E-value=1.5e-11 Score=103.50 Aligned_cols=217 Identities=12% Similarity=0.119 Sum_probs=184.8
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|+.|--.+ .|+..+|+.-|++..+.+ |.=...|-.|...|...+.+++|+..|.+..... +-....+..+...|..
T Consensus 221 wsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 221 WSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYE 298 (966)
T ss_pred ehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEec
Confidence 77777777 999999999999998875 4457889999999999999999999998887763 2345678889999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCL 199 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~ 199 (271)
.|.+|.|++.+++..+. .|+ ...|+.|..++-..|+..+|++.+...... .|+ ....+.|...|.+.|.+++|.
T Consensus 299 qG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHH
Confidence 99999999999999886 454 789999999999999999999999998876 343 578999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHH---HHhhccccccchhhh
Q 036275 200 EIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN---LYGEKGVARSNLGQY 268 (271)
Q Consensus 200 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~G~~~~a~~~~ 268 (271)
++|....+- .|. ...++.|...|.++|++++|...+++..+-.+..-.++.+ .|...|+...|++-|
T Consensus 375 ~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 375 RLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 999998774 344 5678899999999999999999999998877766555554 488899998888765
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=1.6e-10 Score=101.45 Aligned_cols=203 Identities=8% Similarity=-0.005 Sum_probs=149.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK---------TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
.+.+++|.+.|++..+.. |-+...|..+..++.. .+++++|...+++..+... -+...+..+...+...
T Consensus 274 ~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 455788999999988775 4456667666655542 2447899999999888753 3667788888888899
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~ 201 (271)
|++++|...+++..+.+ +.+...+..+..++...|++++|...+++..+.. |+. ..+..++..+...|++++|...
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999998874 4557788888999999999999999999988763 442 2334445556678899999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccc
Q 036275 202 FEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGV 260 (271)
Q Consensus 202 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~ 260 (271)
+++..+.. .|+ ...+..+..++...|+.++|...+.++....+..... +...|...|+
T Consensus 429 ~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 429 GDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 98887653 343 4446667777888999999999999887665544333 3444566663
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.42 E-value=1.4e-10 Score=110.02 Aligned_cols=219 Identities=7% Similarity=0.018 Sum_probs=159.1
Q ss_pred HHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275 47 FVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124 (271)
Q Consensus 47 ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 124 (271)
+...+ .|++++|++.|++..+.. |-+...+..+...|.+.|++++|...++++.+.... +...+..+...+...++
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCC
Confidence 44445 899999999999998875 557778888999999999999999999998875322 33333333333334444
Q ss_pred HhHHHHHHHHHHhC---------------------------------------CCCCChhhHHHHHHHHHcCCCHHHHHH
Q 036275 125 FEKMEEVLTAMEKG---------------------------------------SYAADISTYNILINIYGRGGFIEKMEG 165 (271)
Q Consensus 125 ~~~a~~~~~~m~~~---------------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~ 165 (271)
.++|...++.+... ..+.+...+..+...+.+.|++++|++
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 44444443332110 124556677788899999999999999
Q ss_pred HHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 166 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
.|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..+...+..++...|++++|.++++++.+..+
T Consensus 625 ~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 625 AYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 999988763 3357889999999999999999999999877652 23455667777888899999999999999876543
Q ss_pred ch---------hHHHHHHHhhccccccchhhhh
Q 036275 246 TA---------LPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 246 ~~---------~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
.. ......++...|+.++|++.|-
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 21 1223567889999999988763
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2.8e-11 Score=102.47 Aligned_cols=234 Identities=13% Similarity=0.047 Sum_probs=174.5
Q ss_pred hHHHHHHHhhcC-chH------HHHHH--hcCHHHHHHHHHHHHHcC---------------------------------
Q 036275 32 FMLINFLLLQHT-PNL------FVFIF--SIYFSDAHAVFEEMKRLG--------------------------------- 69 (271)
Q Consensus 32 ~~~~~f~~~~~~-y~~------ll~~~--~g~~~~A~~~~~~~~~~~--------------------------------- 69 (271)
.|...|..+|+. ||+ +-.+| .+++++|.++|+.+++..
T Consensus 337 ~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~ 416 (638)
T KOG1126|consen 337 EALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT 416 (638)
T ss_pred HHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 455566666554 332 33444 778888888888776542
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHH
Q 036275 70 ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148 (271)
Q Consensus 70 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 148 (271)
-+..+.+|.++.++|+-+++.+.|++.|++..+. .| ...+|+.+..-+....++|.|...|....... +.+-..|-
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwY 493 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWY 493 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHH
Confidence 1345677888888888888899999999888876 34 66788888888888888899988888876642 23345666
Q ss_pred HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228 (271)
Q Consensus 149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 228 (271)
.|.-.|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.++|++++++..... +-|...--.-...+...+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLG 571 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhc
Confidence 77888999999999999999888764 2256677778888889999999999999987754 334544445566677789
Q ss_pred cHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhhhc
Q 036275 229 QIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQYIG 270 (271)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~~~ 270 (271)
+.++|.+.++++.+--+... ..+-..|.+.|+.+.|+..|.|
T Consensus 572 ~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 572 RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 99999999999987665544 4455679999999999887754
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.40 E-value=5.1e-10 Score=103.07 Aligned_cols=203 Identities=12% Similarity=-0.002 Sum_probs=162.9
Q ss_pred HHHhhcCchHHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 036275 37 FLLLQHTPNLFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI 112 (271)
Q Consensus 37 f~~~~~~y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 112 (271)
....|..++.+..++ .|++++|...|+++... +|+...+..+...+.+.|+.++|...+++..+.. +.+...+
T Consensus 503 l~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~ 579 (987)
T PRK09782 503 EQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALY 579 (987)
T ss_pred HHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHH
Confidence 334454455543333 99999999999998654 5555667778888999999999999999998875 2233334
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 036275 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192 (271)
Q Consensus 113 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 192 (271)
..+.......|++++|...+++..+. .|+...+..+..++.+.|+.++|+..+++..... +-+...+..+..++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 44444555679999999999999886 4678899999999999999999999999998873 22466788888899999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 193 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
|++++|...+++..+.. +-+...+..+..++...|++++|...+++..+..+.
T Consensus 657 G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 657 GDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999998863 446678889999999999999999999999776543
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.40 E-value=6.6e-10 Score=105.57 Aligned_cols=221 Identities=8% Similarity=0.041 Sum_probs=132.0
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---------------------------------------
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLT--------------------------------------- 82 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--------------------------------------- 82 (271)
+..+-..+ .|++++|++.|++..+.. +.+...+..+..
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 33444455 778888888888777654 333433333322
Q ss_pred ---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275 83 ---AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159 (271)
Q Consensus 83 ---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 159 (271)
.+...|++++|++.|++..+.... +...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCC
Confidence 233456777777777776665322 44556667777777777777777777766542 2233333333333444444
Q ss_pred HHHHHHHHHhchhCC---------------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275 160 IEKMEGLFQSLPAKR---------------------------------------LKPDVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 160 ~~~a~~~~~~m~~~g---------------------------------------~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
.++|...++.+.... .+.+...+..+...+.+.|++++|..
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 444444444332110 12233445556666777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 201 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~ 268 (271)
.|++..+.. +.+...+..+...+...|+.++|.+.++.+.+..+... ..+..++...|+.++|++.|
T Consensus 625 ~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 625 AYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888777653 34566777777788888888888888887766543332 23445677788887777655
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=7.6e-10 Score=97.27 Aligned_cols=204 Identities=11% Similarity=-0.043 Sum_probs=151.4
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 036275 53 IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL 132 (271)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 132 (271)
+++++|...+++..+.+ |-+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44899999999999886 6688899999999999999999999999999885 335667888899999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 133 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 211 (271)
++..+.. +.+...+..++..+...|++++|.+.++++.... .| ++..+..+..++...|+.++|...+.++... .
T Consensus 396 ~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~ 471 (553)
T PRK12370 396 NECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--E 471 (553)
T ss_pred HHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--c
Confidence 9998873 2233344445556777899999999999987653 24 4556777888889999999999999987655 4
Q ss_pred CCHHH-HHHHHHHHhccCcHHHHHHHHHHHHhcc---cchhHHHHHHHhhccccccc
Q 036275 212 PDGGT-AKVLISACSSEDQIEQVTTLVRTMHKDM---KTALPIYFNLYGEKGVARSN 264 (271)
Q Consensus 212 p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~a 264 (271)
|+..+ ...+...+...| +++...++.+.+.. ..........|.-.|+.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAE 526 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHH
Confidence 44443 444555567767 47777777775432 22223344445555544433
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.31 E-value=3e-09 Score=96.98 Aligned_cols=220 Identities=12% Similarity=0.114 Sum_probs=155.5
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
+..+..++ .|++++|.++|++..+.. |.+...+..+...+...|+.++|+..+++..+.. +.+.. +..+..++..
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHH
Confidence 55555566 999999999999988775 5677788888899999999999999999998873 33455 8888888999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----------------------------
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA----------------------------- 172 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------------------------- 172 (271)
.|+.++|+..++++.+.. +.+...+..+..++...|..++|++.++....
T Consensus 129 ~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 129 AGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 999999999999998863 44566667777777777777766655553221
Q ss_pred -----------------C-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccC
Q 036275 173 -----------------K-RLKPDVV-TWT----SRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSED 228 (271)
Q Consensus 173 -----------------~-g~~~~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g 228 (271)
. ...|+.. .+. ..+.++...|++++|...|+.+.+.+-. |+. ....+..++...|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g 286 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcC
Confidence 1 0111111 111 1133456778889999999998876522 332 2223466788889
Q ss_pred cHHHHHHHHHHHHhcccch-------hHHHHHHHhhccccccchhhh
Q 036275 229 QIEQVTTLVRTMHKDMKTA-------LPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~G~~~~a~~~~ 268 (271)
++++|..+++++.+..+.. ...++.++.+.|+.++|++.+
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999887654322 233455678889998887764
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=3e-09 Score=89.80 Aligned_cols=216 Identities=9% Similarity=0.020 Sum_probs=148.9
Q ss_pred chHHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHH
Q 036275 44 PNLFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLL-LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN--SML 116 (271)
Q Consensus 44 y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li 116 (271)
+..+..+. .|+++.|.+.+....+.. +++..+..+ ..+..+.|+.+.|...+.++.+. .|+..... ...
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a 160 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence 44444444 899999998888766542 233334333 44447889999999999999876 55554332 346
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-------------------
Q 036275 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP------------------- 177 (271)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~------------------- 177 (271)
..+...|++++|...++++.+.. |-+......+...|.+.|++++|.+++..+.+.+..+
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998874 5568889999999999999999999999888654332
Q ss_pred ----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036275 178 ----------------------DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235 (271)
Q Consensus 178 ----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 235 (271)
++.....+..++...|+.++|.+++++..+. .|+.... ++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 2223334455566677777777777776653 4444222 2333334577777777
Q ss_pred HHHHHHhcccchhH---HHHHHHhhccccccchhhh
Q 036275 236 LVRTMHKDMKTALP---IYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 236 ~~~~~~~~~~~~~~---~~~~~~~~~G~~~~a~~~~ 268 (271)
..++..+..+.... .+-.++.+.|++++|.+.|
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777666555443 2345677777777777665
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.30 E-value=5.7e-09 Score=88.49 Aligned_cols=119 Identities=7% Similarity=0.077 Sum_probs=65.4
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTM-KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 130 (271)
.|+++.|.+.+.+..+.. |+. ..+-....+..+.|+.+.|.+.+.+..+....+.....-.....+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 667777776666655442 332 22233344555566666666666666544222222222333555566666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
.++.+.+.. |-+..+...+...+...|++++|.+.+..+.+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 666666653 334555666666666666666666666655543
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=1.4e-09 Score=92.17 Aligned_cols=213 Identities=11% Similarity=0.008 Sum_probs=135.5
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HccCCHhHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY---GRLGQFEKM 128 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~a 128 (271)
.|+++.|.+.++.+.+.. |-++..+..+...+.+.|++++|.+.+.++.+.++.++......-..++ ...+..++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 677777777777777665 4466667777777777777777777777777765432222211111111 222222222
Q ss_pred HHHHHHHHhCC---CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHH
Q 036275 129 EEVLTAMEKGS---YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT---WTSRLAAYSRKKLYRRCLEIF 202 (271)
Q Consensus 129 ~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~a~~~~ 202 (271)
.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+. .|+... ...........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 33333333321 1136777788888899999999999999998876 344332 111222233457788888888
Q ss_pred HHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHH--HHhccc--chhHHHHHHHhhccccccchhhhh
Q 036275 203 EEMIDAGCYPDG---GTAKVLISACSSEDQIEQVTTLVRT--MHKDMK--TALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 203 ~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~--~~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
+...+. .|+. ....++...+.+.|++++|.+.|+. ..+..+ .....+..++.+.|+.++|.+.|.
T Consensus 323 e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 323 EKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 887764 3444 4556788889999999999999994 443333 334567788999999999887763
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.3e-09 Score=87.65 Aligned_cols=212 Identities=15% Similarity=0.092 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC-----------------------
Q 036275 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK--PD----------------------- 108 (271)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~----------------------- 108 (271)
+.+++..-.......|.+.+...-+....+.....+++.|+.+|+++.+...- -|
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 44555555555555554433333333334444455556666666555544210 01
Q ss_pred --------HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275 109 --------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180 (271)
Q Consensus 109 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 180 (271)
+.|+..+.+-|.-.++.++|..+|++..+.+ +-....|+.+.+-|...++...|.+.+++..+-. +.|-.
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyR 399 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYR 399 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHH
Confidence 2233334444444556777777777777653 3345677777777777777777777777776652 33556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhh
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGE 257 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~ 257 (271)
.|..|.++|.-.+.+.=|+-.|++..+.. +-|...|.+|.++|.+.++.++|.+.|++...-+...... +.++|.+
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 77777777777777777777777766653 4466777777777777777777777777776655443333 4455666
Q ss_pred ccccccchhhh
Q 036275 258 KGVARSNLGQY 268 (271)
Q Consensus 258 ~G~~~~a~~~~ 268 (271)
.++..+|...|
T Consensus 479 l~d~~eAa~~y 489 (559)
T KOG1155|consen 479 LKDLNEAAQYY 489 (559)
T ss_pred HHhHHHHHHHH
Confidence 66666666554
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=1.3e-08 Score=76.27 Aligned_cols=198 Identities=9% Similarity=0.002 Sum_probs=168.1
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
.|--.| .|++..|.+-+++..+++ |-+..+|..+...|-+.|..+.|.+-|++..+.... +-...|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 344445 999999999999999987 668889999999999999999999999999987533 5567888899999999
Q ss_pred CHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275 124 QFEKMEEVLTAMEKGSYA-ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 202 (271)
++++|...|++......- .-..+|..+.-+..+.|+.+.|.+.|++..+... -.+.+.-.+.+.....|++..|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHH
Confidence 999999999998876332 3467899999999999999999999999887632 23567888889999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 203 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
+.....+. ++.......|+.-...|+.+.+.++=..+.+..+.+
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 99888764 899999999999999999999999888887766543
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=6.1e-10 Score=94.49 Aligned_cols=212 Identities=11% Similarity=-0.049 Sum_probs=172.2
Q ss_pred HHHHHHHhhcC---chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036275 33 MLINFLLLQHT---PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107 (271)
Q Consensus 33 ~~~~f~~~~~~---y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 107 (271)
+-.+.+.+|.+ |-++-..| +++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+..+.....
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 44555555554 88888889 999999999999998876 447899999999999999999999999988754211
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
.-..|--+...|.+.++++.|+-.|+...+.+ |.+.+....+...+-+.|+.++|++++++......+ |+..--..+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHH
Confidence 22344557888999999999999999999874 556788888999999999999999999998876432 5555566677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 250 (271)
.+...++.++|+..++++++. .|+ ...|..+.+.|.+.|+.+.|..-|.-+.+-.+.....
T Consensus 566 il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 778889999999999999986 565 4567788889999999999999999887766555443
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.24 E-value=9.7e-09 Score=93.69 Aligned_cols=193 Identities=8% Similarity=0.005 Sum_probs=152.3
Q ss_pred hcCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHh
Q 036275 52 SIYFSDAHAVFEEMKRLGIT-P-TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP---DTFVINSMLNLYGRLGQFE 126 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~ 126 (271)
.|++++|++.|+.+.+.+.+ | +...+ +...|...|++++|+.+|+++.+..... .......+..++...|+++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 89999999999999887622 2 22333 5778999999999999999988653211 1345666777889999999
Q ss_pred HHHHHHHHHHhCC-----------CCCC---hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 036275 127 KMEEVLTAMEKGS-----------YAAD---ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192 (271)
Q Consensus 127 ~a~~~~~~m~~~~-----------~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 192 (271)
+|.++++.+.+.. -.|+ ...+..+...+...|++++|+++++++.... +-+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 9999999998752 0122 2345678889999999999999999998763 34577889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 193 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
|++++|.+.+++..+.. +-+...+......+...|++++|..+++++.+..+...
T Consensus 407 g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 407 GWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999988863 33356666777788999999999999999988765544
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=1.2e-08 Score=82.73 Aligned_cols=198 Identities=9% Similarity=-0.047 Sum_probs=142.4
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+-..| .|++++|...|++..+.+ |.++..|+.+...+...|++++|...|++..+.... +..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44444455 899999999999998876 668899999999999999999999999999987422 46678888888999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.|++++|.+.++...+. .|+..............++.++|...|.+..... .|+ .|.. .......|+..++ ..
T Consensus 145 ~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~--~~~~-~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKE--QWGW-NIVEFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Ccc--ccHH-HHHHHHccCCCHH-HH
Confidence 99999999999999886 3443222222233456788999999997755332 233 2321 2233345555444 34
Q ss_pred HHHHHHC---CC--C-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH
Q 036275 202 FEEMIDA---GC--Y-PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250 (271)
Q Consensus 202 ~~~m~~~---~~--~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 250 (271)
+..+.+. .. . .....|..+...+...|+.++|...|++..+.+++....
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 4444421 11 1 123578889999999999999999999999887655443
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=1.5e-08 Score=82.06 Aligned_cols=209 Identities=11% Similarity=-0.019 Sum_probs=147.0
Q ss_pred hcCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHH
Q 036275 52 SIYFSDAHAVFEEMKRLG-ITP--TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 128 (271)
.+..+.++.-+.++.... ..| ....|..+...+...|+.++|...|++..+... .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 566778888888887543 112 256688888899999999999999999998753 3678899999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
...|+...+.. +.+..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999863 345778889999999999999999999998876 454332222223344577899999999776543
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc---cc-------chhHHHHHHHhhccccccchhhhh
Q 036275 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD---MK-------TALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 209 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~-------~~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
. .|+...+ .+... ..|+.+.+ +.+..+.+. .+ ..+..+-..|.+.|+.++|+..|.
T Consensus 195 ~-~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 195 L-DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred C-CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 3332222 22322 23444433 244444321 11 123334566899999999998773
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.17 E-value=2.2e-08 Score=90.69 Aligned_cols=191 Identities=10% Similarity=0.027 Sum_probs=152.0
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPT-MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|...|..+ .|+++.|++.|.+..+.. |-+ ...+ .++..+...|+.++|+.++++.... -.........+...+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence 88888888 999999999999998875 323 2344 8888899999999999999999822 12233444445668889
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.|++++|+++++++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 999999999999999874 455778888899999999999999999999876 56666664444444456677679999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
++++.+.. +-+...+..++.++.+.|-...|.++.++-.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 99999874 4467778888999999999999988877543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.2e-08 Score=83.53 Aligned_cols=166 Identities=12% Similarity=0.057 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
-+.|...+.+-|+-.++.++|..+|++..+.+.. ....|+.+..-|....+...|++-+....+.. |.|-..|-.|..
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQ 406 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhH
Confidence 3455555566666666666666666666555322 34455556666666666666666666665543 445556666666
Q ss_pred HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 232 (271)
+|.-.+...-|+-.|++..... +-|+..|.+|...|.+.++.++|.+.|+.....| ..+...+..|.+.+.+.++..+
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHH
Confidence 6666666666666666555441 2245566666666666666666666666655544 2344555666666666666666
Q ss_pred HHHHHHHHHh
Q 036275 233 VTTLVRTMHK 242 (271)
Q Consensus 233 a~~~~~~~~~ 242 (271)
|.+.+++..+
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 6666555443
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.12 E-value=2.8e-07 Score=74.33 Aligned_cols=215 Identities=11% Similarity=0.037 Sum_probs=149.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|+|..|++...+-.+.+ +.....|-.-..+.-+.|+.+.+-.++.+..+.-..++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 899999999998887776 3344456666677777888888888888887764455555566666777777777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC------------------------------------
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL------------------------------------ 175 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------------------------ 175 (271)
.+++.+.+ +..+........+|.+.|++.....++..+.+.|.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777764 45566777777788888888777777777766544
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------------------------CCHHHHHHH
Q 036275 176 -----KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY------------------------------PDGGTAKVL 220 (271)
Q Consensus 176 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------------------------p~~~~~~~l 220 (271)
+-++..-..++.-+.+.|+.++|.++..+..+++.. -+...+.+|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tL 334 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTL 334 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHH
Confidence 112333444455556677777777776665544321 233567778
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcccc--hhHHHHHHHhhccccccchhhh
Q 036275 221 ISACSSEDQIEQVTTLVRTMHKDMKT--ALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 221 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
-..|.+.+.+.+|...|+...+..+. .+..+-++|.+.|+..+|-+.+
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 88888888888888888877655443 4455677788888887776543
No 47
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=1.7e-08 Score=85.90 Aligned_cols=224 Identities=15% Similarity=0.156 Sum_probs=162.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CC-
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRL-----G-ITPTM-KSHMLLLTAYSKTGNVAKCEGVINQMHKS-----GL-KP- 107 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~- 107 (271)
...+...| .|+++.|+.++....+. | .-|.. ...+.+...|...+++.+|..+|+++... |- .|
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 44477777 99999999999988665 1 12232 33345777888999999999999988653 21 22
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----CC-CCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhC---CCCC
Q 036275 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----SY-AAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAK---RLKP 177 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~ 177 (271)
-..+++.|..+|.+.|++++|..++++..+- |. .|. ...++.++..++..+++++|..+++...+. -+.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 2356788888999999999999888876531 11 233 345677888999999999999999875431 1122
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhc---
Q 036275 178 D----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-----G-CYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKD--- 243 (271)
Q Consensus 178 ~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 243 (271)
+ ..+++.|...|...|++++|.+++++.+.. | ..+. ...++.+...|.+.+...+|.++|.+...-
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 2 358999999999999999999999987642 1 1222 456778888899999999999998875431
Q ss_pred -ccc------hhHHHHHHHhhccccccchhh
Q 036275 244 -MKT------ALPIYFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 244 -~~~------~~~~~~~~~~~~G~~~~a~~~ 267 (271)
++. +...+...|...|+.++|++.
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHH
Confidence 211 233456679999999999874
No 48
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=8.5e-08 Score=71.94 Aligned_cols=174 Identities=10% Similarity=0.020 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 154 (271)
.+...|.-.|.+.|+...|..-+++.++... -+..+|..+...|-+.|+.+.|.+.|+...... +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3455677889999999999999999999853 356789999999999999999999999998863 45678899999999
Q ss_pred HcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036275 155 GRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 233 (271)
|..|++++|...|++....-.-+. ..+|..+.-+..+.|+++.|...|++-++.. +-...+...+.+...+.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999887532222 4589999999999999999999999998864 33456778889999999999999
Q ss_pred HHHHHHHHhcccchhHHH
Q 036275 234 TTLVRTMHKDMKTALPIY 251 (271)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (271)
..+++.....+...-..+
T Consensus 193 r~~~~~~~~~~~~~A~sL 210 (250)
T COG3063 193 RLYLERYQQRGGAQAESL 210 (250)
T ss_pred HHHHHHHHhcccccHHHH
Confidence 999999988776554443
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.8e-08 Score=79.18 Aligned_cols=218 Identities=10% Similarity=-0.017 Sum_probs=174.5
Q ss_pred hHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHc
Q 036275 45 NLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI-NSMLNLYGR 121 (271)
Q Consensus 45 ~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~ 121 (271)
+.+-++| .|.+.+|.+.|+...+. .|-+.||-.|-++|.+..+...|+.++.+-.+. .|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 3455566 99999999999988776 467788999999999999999999999888876 4555554 457778888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.++.++|.++++...+.. +.++.....+...|.-.++.+-|++.++++.+-|+. ++..|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999988873 567778888888899999999999999999998865 788999999999999999999988
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHH---Hhhccccccchhhh
Q 036275 202 FEEMIDAGCYPDG--GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL---YGEKGVARSNLGQY 268 (271)
Q Consensus 202 ~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~G~~~~a~~~~ 268 (271)
|.+.+..--.|+. ..|-.+-......||+..|.+.|+-....+......+.++ =.+.|+.+.|...+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 8887764333443 3566677777888999999999998887776666555443 45678777776554
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.2e-07 Score=74.50 Aligned_cols=195 Identities=13% Similarity=0.102 Sum_probs=115.2
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275 46 LFVFIF--SIYFSDAHAVFEEMKRLG-ITPT--MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120 (271)
Q Consensus 46 ~ll~~~--~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 120 (271)
+|-+.| .|..|+|+++-..+.++- .+-. ......|..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence 455555 777777777777766542 1111 2233455666667777777777777776654 224445566777777
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCH
Q 036275 121 RLGQFEKMEEVLTAMEKGSYAAD----ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLY 195 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~ 195 (271)
...+|++|+++-+++.+.+-.+. ...|--|...+.-..+.+.|..++.+..+.. |+. ..--.+.+.....|++
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccch
Confidence 77777777777766665542221 1234555666666666666666666665542 222 2223334556666677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
..|.+.++...+.+...-..+...|..+|...|+.++....+.++.+.
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777666666666554444455666666666667766666666665543
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.06 E-value=2e-07 Score=82.12 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHh
Q 036275 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYG 256 (271)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~ 256 (271)
..|..+..++.+.|++.+|+.+|..+......-+...|..+.+++...|..++|.+.+++.....+... ..+..+|-
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence 347777888888999999999999988765555677888889999999999999999999887665554 34566799
Q ss_pred hccccccchhhh
Q 036275 257 EKGVARSNLGQY 268 (271)
Q Consensus 257 ~~G~~~~a~~~~ 268 (271)
+.|+.++|++..
T Consensus 495 ~~g~~EkalEtL 506 (895)
T KOG2076|consen 495 QLGNHEKALETL 506 (895)
T ss_pred hcCCHHHHHHHH
Confidence 999999988754
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.06 E-value=2.9e-09 Score=93.19 Aligned_cols=70 Identities=13% Similarity=0.006 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 176 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
.|++.+|..++..-..+|+.+.|..++.+|.+.|++.+.+-|..|+-+ .++...+..+++.|.+.|+.+.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~ 270 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG 270 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCC
Confidence 578888888888888889999999999999988888888877777654 6778888888888887765543
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=7.5e-08 Score=78.99 Aligned_cols=189 Identities=13% Similarity=0.158 Sum_probs=107.5
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|+++.|.+.|++....+.. -......+.-.+-..|++++|++.|-++...- .-+......+.+.|-...+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 67777777777777655422 22222233334556677777777765554321 12444555566666666666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 211 (271)
+.+.... ++.|+...+.|...|-+.|+-..|.+.+-+-..- ++-+..|...|..-|....-++++...|++..- +.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 6555443 4455666666666666666666666655443322 233455555555556666666666666665432 35
Q ss_pred CCHHHHHHHHHHH-hccCcHHHHHHHHHHHHhcccc
Q 036275 212 PDGGTAKVLISAC-SSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 212 p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
|+..-|..++..| .+.|++++|.++++...+..+.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 6666666665554 3456666666666666655443
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=2.3e-07 Score=79.87 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=87.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 224 (271)
++..+...|-..|++++|++.+++.... .|+ +..|..-.+.+-+.|++.+|.+.++..+... .-|...=+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 4456667777888888888888887776 455 5677777788888888888888888887765 33556666667777
Q ss_pred hccCcHHHHHHHHHHHHhcccchhHH------------HHHHHhhccccccchhhhh
Q 036275 225 SSEDQIEQVTTLVRTMHKDMKTALPI------------YFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 225 ~~~g~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~G~~~~a~~~~~ 269 (271)
.+.|+.++|.+++....+.+..+... .-.+|.+.|+...|++.|.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888888888888887665322211 2345888888888887763
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.05 E-value=1.8e-07 Score=84.87 Aligned_cols=200 Identities=10% Similarity=0.047 Sum_probs=160.9
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHH
Q 036275 46 LFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-----LKPDTFVINSMLNLY 119 (271)
Q Consensus 46 ~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~ 119 (271)
.++... .|++.+|++.|+.+...+.+....+-..+.++|...++.++|+.+|+++.... ..++......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 334444 99999999999999998876666788899999999999999999999997653 233444467899999
Q ss_pred HccCCHhHHHHHHHHHHhCCC-------------CCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 036275 120 GRLGQFEKMEEVLTAMEKGSY-------------AAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~~-------------~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 185 (271)
...+++++|..+++.+.+..- .|| ...+..++..+...|++.+|++.++++.... +-|......+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~ 456 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIAL 456 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999987310 122 2344567888999999999999999997763 4578889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275 186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
...+...|.+.+|.+.++...... +-+..+......++...+++++|..+.+.+.+..+..
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 999999999999999997776652 3356677788888899999999999998887655443
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=9.5e-08 Score=78.43 Aligned_cols=181 Identities=14% Similarity=0.210 Sum_probs=152.0
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
||+=+.+- .|++++|++.|-++... +..++.+.-.+.+.|-...+...|++++-+.... ++.|+.....|.+.|-+.
T Consensus 528 fniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 528 FNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred HHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 66655555 99999999999888654 2347788888999999999999999999776654 456788899999999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS-RKKLYRRCLEI 201 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~ 201 (271)
|+-..|.+.+-+-.+. ++-+..+...|...|....-++++...|++... ++|+.+-|..+|..|. +.|++.+|+.+
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999988666554 566788999999999999999999999998765 4899999999997765 68999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 036275 202 FEEMIDAGCYPDGGTAKVLISACSSEDQI 230 (271)
Q Consensus 202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 230 (271)
++..... ++-|......|++.|...|.-
T Consensus 683 yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9998765 677888999999999887743
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.02 E-value=2e-07 Score=75.16 Aligned_cols=187 Identities=14% Similarity=0.124 Sum_probs=119.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|+.+.+-+.+.+..+.--.++...+-.........|+.+.|..-.+++.+.+.. .+.......++|.+.|++..+..+
T Consensus 131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHH
Confidence 5555555555555544422334444444444444555555555555555544322 333444455555555555555555
Q ss_pred HHHHHhCCC-----------------------------------------CCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 132 LTAMEKGSY-----------------------------------------AADISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 132 ~~~m~~~~~-----------------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
+..+.+.|. ..++..-.+++.-+.++|+.++|.++.++.
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 544444322 223444455666677777888887777766
Q ss_pred hhCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275 171 PAKRL------------------------------KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220 (271)
Q Consensus 171 ~~~g~------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 220 (271)
.+.+. +-++..+.+|...|.+.+.|.+|...|+..... .|+..+|..+
T Consensus 290 Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~l 367 (400)
T COG3071 290 LKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAEL 367 (400)
T ss_pred HHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHH
Confidence 54432 224467899999999999999999999976665 7999999999
Q ss_pred HHHHhccCcHHHHHHHHHHHH
Q 036275 221 ISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 221 ~~~~~~~g~~~~a~~~~~~~~ 241 (271)
..++.+.|+..+|.++.++..
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 999999999999999998865
No 58
>PF12854 PPR_1: PPR repeat
Probab=99.00 E-value=7.7e-10 Score=58.16 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=14.7
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 139 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=9.3e-08 Score=78.98 Aligned_cols=212 Identities=12% Similarity=0.051 Sum_probs=121.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|+.-.|..-|+...+..-. +...|--+...|....+.++....|++..+.+.. ++.+|..-.....-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 66666777777776665422 2333555666666667777777777666665432 444555555555566666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA--- 208 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 208 (271)
|++.+... +.+...|-.+.-+..+.+.+++++..|++..++ ++-.+..|+.....+...+++++|.+-|+...+.
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 66666542 334555556666666666677777777766654 3333556666666666677777777666665542
Q ss_pred --CCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccccccchhhh
Q 036275 209 --GCYPDGGTA--KVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 209 --~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~~ 268 (271)
++..+..++ ..++.. .-.+++..|.+++++..+-++....+ +-.+-.+.|+.++|++.|
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111122111 111111 12366666666666666655554333 334456666666666655
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.98 E-value=5e-09 Score=91.76 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=78.8
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220 (271)
Q Consensus 141 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 220 (271)
.|+..+|.+++..-..+|+.+.|..++.+|++.|+..+.+-|..|+-+ .++..-+..+++.|.+.|+.|+..|+.-.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 489999999999999999999999999999999999999888888877 78888899999999999999999999988
Q ss_pred HHHHhccCcHH
Q 036275 221 ISACSSEDQIE 231 (271)
Q Consensus 221 ~~~~~~~g~~~ 231 (271)
+-.+.++|...
T Consensus 278 vip~l~N~~t~ 288 (1088)
T KOG4318|consen 278 VIPQLSNGQTK 288 (1088)
T ss_pred HHhhhcchhhh
Confidence 88877755533
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.4e-07 Score=78.02 Aligned_cols=192 Identities=7% Similarity=0.010 Sum_probs=153.1
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
-+-.+| ..+.++-++.|++....+ +-++.+|..-.....-.+++++|..=|++.++.... +...|-.+.-+..+.+
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHH
Confidence 344455 888999999999998887 668899998888888899999999999999887422 5566777777778899
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC-----CCCCHHHH-HHHHHHHHhcCCHHH
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-----LKPDVVTW-TSRLAAYSRKKLYRR 197 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~-~~li~~~~~~g~~~~ 197 (271)
.+++++..|++.+++ +|..+..|+....++...+++++|.+.|+...+.. +-.+..++ +.-+-.+--.+++..
T Consensus 443 k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~ 521 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQ 521 (606)
T ss_pred HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHH
Confidence 999999999999987 67778999999999999999999999999876542 11121111 111112224589999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
|..++++..+.. +-....|..|...-.+.|+.++|.++|++-.
T Consensus 522 a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 522 AENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998865 3456789999999999999999999999864
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=2.2e-08 Score=78.79 Aligned_cols=201 Identities=9% Similarity=-0.071 Sum_probs=167.8
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|-.|-+.| ..+++.|+.+|.+-...- |-++.....+.+.+-..++.++|.++|+...+.. +.++....++...|.-
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY 336 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFY 336 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeeeecccc
Confidence 77888888 899999999999887653 5566555667788888899999999999998875 3366677778888889
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD--VVTWTSRLAAYSRKKLYRRCL 199 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~ 199 (271)
.++++-|+.++.++.+.|+ .+...|+.+.-+|.-.++++-++-.|++....--.|+ ...|..+-...+..||+..|.
T Consensus 337 ~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 337 DNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred CCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHH
Confidence 9999999999999999985 6788999999999999999999999998776543444 347888888889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 200 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
+.|+-.+..+ .-+...++.|.-.-.+.|++++|..++.......+...
T Consensus 416 rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 416 RCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 9999988765 44678899988888999999999999998876655443
No 63
>PF12854 PPR_1: PPR repeat
Probab=98.94 E-value=1.5e-09 Score=57.08 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 036275 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM 135 (271)
Q Consensus 104 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 135 (271)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666655
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=4.7e-07 Score=70.92 Aligned_cols=168 Identities=9% Similarity=0.024 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChh---hHH
Q 036275 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-P-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS---TYN 148 (271)
Q Consensus 74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~ 148 (271)
...+..+...+...|+++.|...|+++...... | ....+..+..++.+.|++++|...++++.+.. +.+.. ++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHH
Confidence 444445555555555555555555555543211 0 01234445555555555555555555555431 11111 233
Q ss_pred HHHHHHHcC--------CCHHHHHHHHHhchhCCCCCCHH-H-----------------HHHHHHHHHhcCCHHHHHHHH
Q 036275 149 ILINIYGRG--------GFIEKMEGLFQSLPAKRLKPDVV-T-----------------WTSRLAAYSRKKLYRRCLEIF 202 (271)
Q Consensus 149 ~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~-~-----------------~~~li~~~~~~g~~~~a~~~~ 202 (271)
.+..++... |+.++|.+.|+.+... .|+.. . ...+...+.+.|++.+|...+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 333334332 4555555555555443 12211 1 123445677889999999999
Q ss_pred HHHHHCC--CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 203 EEMIDAG--CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 203 ~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
+...+.. -+.....+..+..++...|+.++|..+++.+..+.
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8887642 12235677888888999999999999888887654
No 65
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=7e-08 Score=77.47 Aligned_cols=147 Identities=13% Similarity=0.134 Sum_probs=71.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH----cCCCHH
Q 036275 86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG----RGGFIE 161 (271)
Q Consensus 86 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~ 161 (271)
..|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+. ..|.. ...+..++. ..+.++
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHH
Confidence 445555555555331 23444445555666666666666666666553 22222 222222222 223456
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH-HHHHHHHHHH
Q 036275 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI-EQVTTLVRTM 240 (271)
Q Consensus 162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 240 (271)
+|.-+|+++... ..+++.+.+.+..++...|++++|.+++.+..+.+ +-+..+...++-+....|+. +.+.+++.++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 666666665443 34455555666666666666666666666554432 22344555555555555555 4455555555
Q ss_pred Hhc
Q 036275 241 HKD 243 (271)
Q Consensus 241 ~~~ 243 (271)
...
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.87 E-value=6.6e-07 Score=76.45 Aligned_cols=196 Identities=18% Similarity=0.224 Sum_probs=145.8
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCHH
Q 036275 46 LFVFIF--SIYFSDAHAVFEEMKRL-----G--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-----GLK-PDTF 110 (271)
Q Consensus 46 ~ll~~~--~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~-~~~~ 110 (271)
.+-..| .+++++|..+|.++... | .+.-..+++.|..+|.+.|++++|...+++..+. |.. |.+.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 344455 89999999999988543 2 2334566778888999999999998888766432 222 2222
Q ss_pred -HHHHHHHHHHccCCHhHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CC--C
Q 036275 111 -VINSMLNLYGRLGQFEKMEEVLTAMEKG---SYAA----DISTYNILINIYGRGGFIEKMEGLFQSLPAK----RL--K 176 (271)
Q Consensus 111 -~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--~ 176 (271)
.++.+...+...+++++|..++....+. -+.+ -..+++.|...|...|++++|++++++.... +- .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 3677888899999999999998866532 1112 2468999999999999999999999987642 11 2
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 177 PD-VVTWTSRLAAYSRKKLYRRCLEIFEEMI----DAGC-YPD-GGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 177 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
+. -..++.|...|.+.++..+|.++|.+-. ..|. .|+ ..+|..|..+|...|+++.|.++.+.+.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 3467888899999999999999887643 3332 233 4689999999999999999999998875
No 67
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=6.4e-08 Score=77.70 Aligned_cols=210 Identities=12% Similarity=0.112 Sum_probs=140.1
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHcc
Q 036275 46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN-SMLNLYGRL 122 (271)
Q Consensus 46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~ 122 (271)
.+.++| .|+++.++ .++.... .|.......+...+....+-+.++.-+++.......++..++. .....+...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 445566 78877544 4444444 6777777666555554455666666655554444333333333 334556778
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH----hcCCHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS----RKKLYRRC 198 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~a 198 (271)
|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. +..+...+..++. ..+.+.+|
T Consensus 116 ~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 116 GDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred CCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHH
Confidence 9999999887542 356777888999999999999999999998753 3345555555544 23468999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHH---Hhhccccccchhhhh
Q 036275 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL---YGEKGVARSNLGQYI 269 (271)
Q Consensus 199 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~G~~~~a~~~~~ 269 (271)
..+|+++.+. ..++..+.+.+..+....|++++|.+++.+..+.++....++.+. ....|+..++.++|+
T Consensus 187 ~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 187 FYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp HHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 9999998765 568888999999999999999999999999887777666666554 566787777776665
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.82 E-value=4.3e-07 Score=80.75 Aligned_cols=220 Identities=11% Similarity=0.134 Sum_probs=171.4
Q ss_pred hHHHHHHHhhcCchHHHHHH---------hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036275 32 FMLINFLLLQHTPNLFVFIF---------SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102 (271)
Q Consensus 32 ~~~~~f~~~~~~y~~ll~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 102 (271)
.|.+.+..+.+.|-..|.+| .+...+|...+.+....+ ..++..+..+...+.+...+..|.+-|..+.+
T Consensus 514 ~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 46666777777666666666 367788999998887765 45677777788888888889888888877766
Q ss_pred CC-CCCCHHHHHHHHHHHHc------------cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHh
Q 036275 103 SG-LKPDTFVINSMLNLYGR------------LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169 (271)
Q Consensus 103 ~~-~~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 169 (271)
.- ..+|+...-+|.+.|.+ .+..++|+++|.+..+.. |.+...-|-+.-.++..|++.+|..+|.+
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHH
Confidence 52 23566666666665553 245678999999888873 66888889999999999999999999999
Q ss_pred chhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 170 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
+++... -...+|-.+...|...|++..|.++|+.... ..-.-+..+...|.+++...|.+.+|.+.........+..+
T Consensus 672 VrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 672 VREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 998743 1345799999999999999999999998664 44455788899999999999999999999888877766666
Q ss_pred HHHHHH
Q 036275 249 PIYFNL 254 (271)
Q Consensus 249 ~~~~~~ 254 (271)
...++.
T Consensus 751 ~v~FN~ 756 (1018)
T KOG2002|consen 751 SVKFNL 756 (1018)
T ss_pred hHHhHH
Confidence 555554
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=4.1e-06 Score=64.23 Aligned_cols=165 Identities=10% Similarity=0.032 Sum_probs=134.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
|... ..+-..+...|+-+....+..+..... .-|....+..+....+.|++.+|...+.+..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4455 566777778888888888877655443 3355667778999999999999999999998764 788999999999
Q ss_pred HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 232 (271)
+|.+.|+.++|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++......+ .-|...-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999988763 2256788999999999999999999999988775 3477777888888899999999
Q ss_pred HHHHHHHHHh
Q 036275 233 VTTLVRTMHK 242 (271)
Q Consensus 233 a~~~~~~~~~ 242 (271)
|..+...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998775543
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=1.5e-06 Score=68.05 Aligned_cols=163 Identities=10% Similarity=-0.001 Sum_probs=120.9
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTM---KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLN 117 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~ 117 (271)
|+.....+ .|++++|...|+++.+.. +.+. ..+..+..++.+.|++++|...++++.+....... .++..+..
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~ 115 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGL 115 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHH
Confidence 44444445 999999999999998764 3232 46778889999999999999999999876432111 24445555
Q ss_pred HHHcc--------CCHhHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHcCCCHHHHHHHHHhchh
Q 036275 118 LYGRL--------GQFEKMEEVLTAMEKGSYAADISTY-----------------NILINIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 118 ~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~ 172 (271)
++... |+.++|.+.++.+.+.. +.+...+ ..+...+.+.|++++|...+++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 194 (235)
T TIGR03302 116 SNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVE 194 (235)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55544 78899999999998762 2222222 1345678899999999999999876
Q ss_pred CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 173 KRL--KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 173 ~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
... +.....+..+..++...|++++|...++.+...
T Consensus 195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 521 223578999999999999999999999888764
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=9.6e-06 Score=67.57 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=109.3
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHh
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLGQFE 126 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~ 126 (271)
.|++++|.+.+++..+.. |.+...+.. ...+.. .+..+.+.+.+.. .....|+. .....+...+...|+++
T Consensus 56 ~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 56 AGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 999999999999988764 555555553 222222 3445555555544 11223333 34456667888999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 036275 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-KPDV--VTWTSRLAAYSRKKLYRRCLEIFE 203 (271)
Q Consensus 127 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~ 203 (271)
+|...+++..+.. +.+...+..+..++...|++++|...+++...... .|+. ..|..+...+...|++++|..+++
T Consensus 132 ~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 132 RAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998874 55677888899999999999999999998776422 1222 345678888999999999999999
Q ss_pred HHHHC
Q 036275 204 EMIDA 208 (271)
Q Consensus 204 ~m~~~ 208 (271)
+....
T Consensus 211 ~~~~~ 215 (355)
T cd05804 211 THIAP 215 (355)
T ss_pred HHhcc
Confidence 98643
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.6e-06 Score=70.96 Aligned_cols=197 Identities=9% Similarity=-0.048 Sum_probs=154.4
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|-++--.| .|+.++|.+.|.+....+ +.=...|-.....|+-.|..+.|+..|...-+.=.. ...-+--+.--|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHH
Confidence 66666556 999999999999887665 234567888999999999999999998776654110 11112234455778
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC--C----CCCCHHHHHHHHHHHHhcCCH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK--R----LKPDVVTWTSRLAAYSRKKLY 195 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g----~~~~~~~~~~li~~~~~~g~~ 195 (271)
.++.+.|.++|.+.... .|.|+...+-+.-.....+.+.+|...|+..... . ......+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 99999999999988876 3567888888888888899999999999986621 0 112445789999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
++|...++..+... +-|..++.++.-.+...|+++.|.+.|.+..--.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999999988764 6688899999999999999999999999876443
No 73
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=2.7e-06 Score=64.58 Aligned_cols=155 Identities=8% Similarity=0.126 Sum_probs=115.2
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|+++.+......+. .|. ..+...++.+++...+++..+.. +.+...|..+...|...|++++|...
T Consensus 29 ~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a 95 (198)
T PRK10370 29 SPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLA 95 (198)
T ss_pred cchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888654442221 111 01223666788888887777765 44788899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHH-HcCCC--HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 132 LTAMEKGSYAADISTYNILINIY-GRGGF--IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
+++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+. -+..++..+...+.+.|++++|...|+++.+.
T Consensus 96 ~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 96 YRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99998874 55778888888864 67777 5999999999988742 25678888889999999999999999999886
Q ss_pred CCCCCHHHHHHHHHH
Q 036275 209 GCYPDGGTAKVLISA 223 (271)
Q Consensus 209 ~~~p~~~~~~~l~~~ 223 (271)
. +|+..-+..+ ++
T Consensus 174 ~-~~~~~r~~~i-~~ 186 (198)
T PRK10370 174 N-SPRVNRTQLV-ES 186 (198)
T ss_pred C-CCCccHHHHH-HH
Confidence 4 5565544433 54
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.67 E-value=8.7e-06 Score=61.84 Aligned_cols=154 Identities=8% Similarity=0.038 Sum_probs=117.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159 (271)
Q Consensus 80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 159 (271)
-+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 34567788998887555433321 11 0 1223667788888888877764 6789999999999999999
Q ss_pred HHHHHHHHHhchhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036275 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAY-SRKKL--YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236 (271)
Q Consensus 160 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 236 (271)
+++|...|++..... +-+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+...|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999988864 22567788877764 67777 599999999999875 44677888888889999999999999
Q ss_pred HHHHHhcccchh
Q 036275 237 VRTMHKDMKTAL 248 (271)
Q Consensus 237 ~~~~~~~~~~~~ 248 (271)
++++.+..++..
T Consensus 167 ~~~aL~l~~~~~ 178 (198)
T PRK10370 167 WQKVLDLNSPRV 178 (198)
T ss_pred HHHHHhhCCCCc
Confidence 999987665543
No 75
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.67 E-value=2.3e-05 Score=67.52 Aligned_cols=229 Identities=13% Similarity=0.110 Sum_probs=158.5
Q ss_pred HHHHHHhhcC---chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036275 34 LINFLLLQHT---PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD 108 (271)
Q Consensus 34 ~~~f~~~~~~---y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 108 (271)
...|+-.|++ |-+.+..- +.++++|..+|.+.... .|+...|.--+..-.-.++.++|.+++++..+. .|+
T Consensus 608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence 3456666665 33333333 77777787777776654 456666666666666667777777777777665 344
Q ss_pred H-HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 109 T-FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 109 ~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
- ..|-.+...+-+.++.+.|.+.|..-.+. .|-.+..|-.|...=-+.|.+-.|..++++.+.++ +-+...|-..|+
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 3 34556666666777777777766555443 34456677777777778888888888888887764 236778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----------------------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036275 188 AYSRKKLYRRCLEIFEEMIDA-----------------------------GCYPDGGTAKVLISACSSEDQIEQVTTLVR 238 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~-----------------------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 238 (271)
.=.+.|+.+.|..++.+.++. .+..|.+....+...+-...++++|.+.|.
T Consensus 762 ~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888777665542 123566667777777888889999999999
Q ss_pred HHHhccc---chhHHHHHHHhhccccccchhhh
Q 036275 239 TMHKDMK---TALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 239 ~~~~~~~---~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+..+.++ ..+..++..+..+|.-++-.+.|
T Consensus 842 Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 842 RAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred HHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 9887654 45666778888888666655544
No 76
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=7.2e-06 Score=68.13 Aligned_cols=143 Identities=7% Similarity=0.011 Sum_probs=85.2
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD-TFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~ 121 (271)
|..-+..| .|++++|+..++.+.+.. |-|+..+......+.+.++..+|.+.++++... .|+ ....-.+..++.+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence 55666666 666666666666665542 445555555566666666666666666666665 333 3444455666666
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.|++.+|+.+++..... .+.|+..|..|..+|...|+..++.....+. +...|+++.|...
T Consensus 387 ~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHH
Confidence 66666666666666555 2556666666666666666666555444332 3445666666666
Q ss_pred HHHHHHC
Q 036275 202 FEEMIDA 208 (271)
Q Consensus 202 ~~~m~~~ 208 (271)
+....+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 6555543
No 77
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=3.4e-06 Score=60.66 Aligned_cols=95 Identities=7% Similarity=-0.168 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275 77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156 (271)
Q Consensus 77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 156 (271)
+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445566666777777777777766654 2355666666777777777777777777776653 4456666667777777
Q ss_pred CCCHHHHHHHHHhchhC
Q 036275 157 GGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 157 ~g~~~~a~~~~~~m~~~ 173 (271)
.|++++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766654
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=2.3e-05 Score=65.26 Aligned_cols=189 Identities=10% Similarity=-0.065 Sum_probs=128.0
Q ss_pred hcCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCCH
Q 036275 52 SIYFSDAHAVFEEMKRLGI-TPTM-KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG----RLGQF 125 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~ 125 (271)
.|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.+...+.. ...+. ..+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~ 96 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMR 96 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCc
Confidence 6778887777777655431 1222 222233445667899999999999988773 224444442 22222 34555
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 205 (271)
+.+.+.++.. ....+........+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 97 ~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 97 DHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred hhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5555555541 11222234455567778999999999999999998863 334567888889999999999999999998
Q ss_pred HHCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 206 IDAGC-YPDG--GTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 206 ~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
....- .|+. ..|..+...+...|+.++|..++++.....
T Consensus 175 l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 175 RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 76421 2333 345577888999999999999999986443
No 79
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.8e-05 Score=66.87 Aligned_cols=211 Identities=10% Similarity=0.057 Sum_probs=132.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.+++.+..++++...+.. |+....+..=|.++.+.|+..+-+.+=.++.+.- +-...+|-++.-.|...|+..+|.++
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 666666666666666554 5555556555666666666666666666666552 22445566666666666666666666
Q ss_pred HHHHHhCCCCCC-hhhHHHHHHHHHcC----------------------------------CCHHHHHHHHHhchhCCCC
Q 036275 132 LTAMEKGSYAAD-ISTYNILINIYGRG----------------------------------GFIEKMEGLFQSLPAKRLK 176 (271)
Q Consensus 132 ~~~m~~~~~~~~-~~~~~~li~~~~~~----------------------------------g~~~~a~~~~~~m~~~g~~ 176 (271)
|.....- .|+ ...|-....+|+-. ++.+-|.+.|.+.... .
T Consensus 335 ~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~ 410 (611)
T KOG1173|consen 335 FSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--A 410 (611)
T ss_pred HHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--C
Confidence 6655432 121 23444444445444 4455555555544432 3
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH
Q 036275 177 P-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA------GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249 (271)
Q Consensus 177 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 249 (271)
| |+...+-+.-.....+.+.+|...|+..++. ....-..+++.|..++.+.+.+++|...+++...-.+..+.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 3 4455666655556678888888888876521 11124456888888999999999999999988766555444
Q ss_pred H---HHHHHhhccccccchhhh
Q 036275 250 I---YFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 250 ~---~~~~~~~~G~~~~a~~~~ 268 (271)
. +--.|...|+++.|++.|
T Consensus 491 ~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHH
Confidence 4 445588899999998876
No 80
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.62 E-value=3.1e-06 Score=60.12 Aligned_cols=97 Identities=8% Similarity=-0.049 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 154 (271)
.....+...+...|++++|.+.++++...+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444445555555555555555554443 2244444555555555555555555555554442 33344444455555
Q ss_pred HcCCCHHHHHHHHHhchhC
Q 036275 155 GRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~~~ 173 (271)
...|++++|.+.|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555554443
No 81
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=4.1e-05 Score=62.48 Aligned_cols=210 Identities=11% Similarity=0.056 Sum_probs=150.6
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 120 (271)
++.+-..+ .++.++|+.+.+++.+.+ |-+..+|+.--.++...| ++++++..++++.+...+ +..+|+..-..+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 34444445 789999999999999876 556777877777777777 579999999999987543 5556766555555
Q ss_pred ccCCH--hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc---CCH
Q 036275 121 RLGQF--EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK---KLY 195 (271)
Q Consensus 121 ~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~ 195 (271)
+.|+. +++..+++.+.+.. +-+..+|+...-++...|+++++++.++++.+.+.. |...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 66653 67888888888764 567889999999999999999999999999887543 566777776665554 222
Q ss_pred ----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHhcccchh---HHHHHHHhhc
Q 036275 196 ----RRCLEIFEEMIDAGCYPDGGTAKVLISACSSE----DQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEK 258 (271)
Q Consensus 196 ----~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~ 258 (271)
++............ +-|...|..+...+... +...+|...+.+..+.++... ..+.++|...
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 45666666666653 44667788777777662 344568888888766554433 3467777753
No 82
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=5.4e-06 Score=63.56 Aligned_cols=152 Identities=13% Similarity=0.014 Sum_probs=126.5
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|+-+.+..+........ +-|....+..+....+.|++..|+..+++..... ++|..+|+.+.-+|.+.|++++|..-
T Consensus 79 ~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~a 156 (257)
T COG5010 79 RGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRA 156 (257)
T ss_pred cccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHH
Confidence 677777777666654332 4466677779999999999999999999998765 67899999999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
|.+..+-. +-+....+.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++++|..+...-+.
T Consensus 157 y~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 157 YRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 99988862 44677889999999999999999999999987743 3667788888888999999999998876544
No 83
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.61 E-value=3e-05 Score=66.83 Aligned_cols=190 Identities=11% Similarity=0.026 Sum_probs=125.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++..|..++....+.+ +.+...|-.-+..-.....++.|..+|.+.... .|+...|..-+..-.-.++.++|.++
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 677777777777766654 446666766677777777777777777666654 45666665555555666777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 211 (271)
+++..+. ++.-...|-.+...+-+.++++.|.+.|..=.+. ++-....|-.|.+.=-+.|.+-.|..++++.+-.+ +
T Consensus 674 lEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 674 LEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 7776665 3334566666777777777777777776654433 22234456666666666777777878887776654 4
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
-|...|...|+.-.+.|..+.|..++.+..+..+..
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 466777777888778888888887777776655443
No 84
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=1.6e-05 Score=71.30 Aligned_cols=161 Identities=13% Similarity=0.097 Sum_probs=104.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHH
Q 036275 70 ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN 148 (271)
Q Consensus 70 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 148 (271)
.+.++..+..|.....+.|+.++|..+++...+. .|+. .....+...+.+.+++++|...+++..... +.+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 3555777777777777777777777777777766 3443 445666777777777777777777777663 34556666
Q ss_pred HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228 (271)
Q Consensus 149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 228 (271)
.+..++...|++++|..+|+++...+ .-+..++..+..++...|+.++|...|+...+.- .|....|+..+ +
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------H
Confidence 77777777777777777777777632 2235677777777777777777777777766542 34444444433 3
Q ss_pred cHHHHHHHHHHHH
Q 036275 229 QIEQVTTLVRTMH 241 (271)
Q Consensus 229 ~~~~a~~~~~~~~ 241 (271)
++..-...++++.
T Consensus 231 ~~~~~~~~~~~~~ 243 (694)
T PRK15179 231 DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHHcC
Confidence 3444455555554
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.7e-05 Score=67.23 Aligned_cols=183 Identities=12% Similarity=0.108 Sum_probs=135.4
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++.+|.-.|+...+.+ |-+...|..|...-...++-..|+..+++..+.... +....-.|.-.|...|.-..|.+.
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888999999999888876 668889999988888888888899888888877422 445566666667766666666666
Q ss_pred HHHHHh------------------------------------------CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHh
Q 036275 132 LTAMEK------------------------------------------GSYAADISTYNILINIYGRGGFIEKMEGLFQS 169 (271)
Q Consensus 132 ~~~m~~------------------------------------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 169 (271)
++.... .+..+|+.+...|.-.|--.|++++|.+.|+.
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 555432 22235667777777778888888888888888
Q ss_pred chhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275 170 LPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTM 240 (271)
Q Consensus 170 m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 240 (271)
.... +| |..+||.|..++....+.++|...|.+.++. .|+ ++....|.-+|...|.+++|...|-..
T Consensus 456 AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 456 ALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 7765 44 4567888888888888888888888888775 454 345555666778888888888877764
No 86
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.7e-05 Score=60.02 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=93.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH---
Q 036275 79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG--- 155 (271)
Q Consensus 79 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--- 155 (271)
.-...|+..+++++|++..... . +......=+..+.+..+++.|.+.++.|.+.. +..|.+.|..++.
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLA 183 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHh
Confidence 3344566777778777776551 1 22222222344556677777888777777642 3444554544443
Q ss_pred -cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH-HH
Q 036275 156 -RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE-QV 233 (271)
Q Consensus 156 -~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~-~a 233 (271)
..+.+.+|.-+|++|.++ ..|++.+.+-...++...|++++|..++++.+.+. .-+..+...++-.-...|... ..
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 345677788888887764 46777777777777778888888888888777654 335556665555555555443 34
Q ss_pred HHHHHHHHhc
Q 036275 234 TTLVRTMHKD 243 (271)
Q Consensus 234 ~~~~~~~~~~ 243 (271)
.+.+.++...
T Consensus 262 ~r~l~QLk~~ 271 (299)
T KOG3081|consen 262 ERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHhc
Confidence 4455555443
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.59 E-value=2.5e-05 Score=67.52 Aligned_cols=181 Identities=14% Similarity=0.110 Sum_probs=133.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHc
Q 036275 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----G----------LKPDTF--VINSMLNLYGR 121 (271)
Q Consensus 58 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~ 121 (271)
+...+..+...||| .+|+.|-..|....+.+-..+++...... + -+|+.. ++..+...|-.
T Consensus 130 ~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 44555666777765 45666666666565555566666555432 1 134443 44666778889
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.|+.++|++++++..+.. |..+..|..-...+-..|++++|.+.++..+..... |...=+..+..+.++|+.++|.++
T Consensus 207 ~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred hCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999873 344789999999999999999999999999987532 666777778889999999999999
Q ss_pred HHHHHHCCCCCCHHH------H--HHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 202 FEEMIDAGCYPDGGT------A--KVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 202 ~~~m~~~~~~p~~~~------~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
+......+..|-... | .....+|.+.|++..|++.|..+.+.
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999887664443322 1 33456788999999999888777653
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=3.4e-06 Score=60.65 Aligned_cols=108 Identities=6% Similarity=-0.056 Sum_probs=79.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC
Q 036275 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174 (271)
Q Consensus 95 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 174 (271)
.++++..+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++.....
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455555544 333 34456677778888888888888887763 4567788888888888888888888888887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 175 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
+.+..++..+..++...|++++|...|+...+.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 335677888888888888888888888887765
No 89
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.58 E-value=1.1e-06 Score=73.40 Aligned_cols=124 Identities=10% Similarity=0.068 Sum_probs=100.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhh
Q 036275 69 GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS--GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146 (271)
Q Consensus 69 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 146 (271)
+.+.++.....+++.+....+++.+..++-+.... ....-..|.+++|+.|.+.|..+.+..++..=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667888888888888888888998888888776 3333344556899999999999999999988888899999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 036275 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192 (271)
Q Consensus 147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 192 (271)
+|.|++.+.+.|++..|.++...|...+...++.|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888777666777777777666554
No 90
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.00011 Score=56.31 Aligned_cols=202 Identities=13% Similarity=0.061 Sum_probs=115.5
Q ss_pred hcCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHh
Q 036275 52 SIYFSDAHAVFEEMKRL---G-ITPTMK-SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE 126 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 126 (271)
..+.++.++++..+... | ..++.. .|..++-+..-.|+.+.|...++++...- +-+...-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 66677777777666432 2 223322 23334444455677777777777776653 112221111122234467777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 127 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
+|+++++.+.+.. |.|.+++---+.+.-..|+.-+|++-+....+. +..|...|..+-..|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777777664 555666665566666666666666666655543 34567777777777777777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHhcccchhHHHHHHHhh
Q 036275 207 DAGCYPDGGTAKVLISACSS---EDQIEQVTTLVRTMHKDMKTALPIYFNLYGE 257 (271)
Q Consensus 207 ~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 257 (271)
-.. +.+..-+..+...+.. ..+...+.+++.+..+.++.....++.+|..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 542 3333334444444322 2344566677777766666555555555443
No 91
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.57 E-value=5.9e-06 Score=59.57 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=65.1
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLN 117 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~ 117 (271)
|..++..+ .++...+.+.++.+.+.. +.+ ....-.+...+...|++++|...|+........++. ...-.+..
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 55555666 666666666666665543 222 222223445555666666666666666665422221 12233455
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHh
Q 036275 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS 169 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 169 (271)
.+...|++++|+..++..... ......+....++|.+.|+.++|...|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556666666666666553322 22344455566666666666666666654
No 92
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.56 E-value=7.6e-05 Score=66.97 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=71.5
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLN 117 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~ 117 (271)
-+.|...| .|+++.++.+...+.... -..-+..|--+.++|...|++++|..+|.+..+. .++. ..+--|..
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhH
Confidence 44444444 777777777776665542 1123445666777777777777777777665554 2332 22344666
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC----CHHHHHHHHHhch
Q 036275 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG----FIEKMEGLFQSLP 171 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~ 171 (271)
.+.+.|+++.+...|+...+. .+.+..+..+|...|...+ ..++|..++.+..
T Consensus 351 m~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 777777777777777776665 2344555555655555543 2344444444433
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=4.1e-06 Score=72.61 Aligned_cols=196 Identities=14% Similarity=0.087 Sum_probs=136.8
Q ss_pred HHHHHHHhhcCchHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036275 33 MLINFLLLQHTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110 (271)
Q Consensus 33 ~~~~f~~~~~~y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 110 (271)
|..+|+++.- |.-+|..| .|+-..|..+..+..++ +||+..|..+.+.....--++.|.++.+..-.+
T Consensus 417 Al~I~Erlem-w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar------- 486 (777)
T KOG1128|consen 417 ALVIFERLEM-WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR------- 486 (777)
T ss_pred HHHHHHhHHH-HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------
Confidence 3344554433 77777777 77778887777776663 677888877777766666667777766554332
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHH
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAY 189 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~ 189 (271)
.-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.|...... .|+ ...||.+-.+|
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAY 563 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHH
Confidence 11222222334677888888887666653 456777888888888888888888888887765 454 56788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|.+.+.++..
T Consensus 564 i~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88888888888888888766 44555666666667788888888888887753
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=7.6e-06 Score=71.04 Aligned_cols=198 Identities=12% Similarity=0.058 Sum_probs=156.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|-...|..+|+++ ..|..+|.+|...|+..+|..+..+..+. +||+..|..+.+.....--+++|.++
T Consensus 411 lGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 411 LGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred cchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHH
Confidence 77788888888765 35778899999999999999988887774 78888998888888777778888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 211 (271)
.+....+ .-..+.....+.++++++.+.|+.-.+.. .....+|-.+-.+..+.+++..|.+.|...+... +
T Consensus 480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-P 550 (777)
T KOG1128|consen 480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-P 550 (777)
T ss_pred hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-C
Confidence 8765432 11222233344799999999999766542 3356789999999999999999999999988763 3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc---cchhHHHHHHHhhccccccchhhhh
Q 036275 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM---KTALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
-+...|+.+-.++.+.++-.+|...+++..+-+ ...+..++-.-.+.|..++|++.|-
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 356889999999999999999999999998765 3445667778899999999988764
No 95
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.50 E-value=9.2e-06 Score=57.68 Aligned_cols=120 Identities=8% Similarity=-0.019 Sum_probs=83.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC
Q 036275 96 VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175 (271)
Q Consensus 96 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 175 (271)
.+++....... +......+...+...|+.++|.+.++.....+ +.+...+..+...+...|++++|...+++....+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34455544211 33445666777778888888888888877753 4567777788888888888888888888776653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220 (271)
Q Consensus 176 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 220 (271)
+.+...+..+...+...|++++|...|+...+. .|+...+..+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 335667777777888888888888888887775 3555444433
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=3.5e-05 Score=70.18 Aligned_cols=198 Identities=9% Similarity=0.065 Sum_probs=131.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----------------
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL---------------- 105 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------------- 105 (271)
|..|+..| .+++++|.++.+...+.. |-....|-.+...+.+.++.+.+..+ .+...-.
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHH
Confidence 77888888 999999999999776653 33444455555566677766666555 3322210
Q ss_pred --CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHH
Q 036275 106 --KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183 (271)
Q Consensus 106 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 183 (271)
.-+...+..+..+|-+.|+.+++..+++++.+.. +-++.+.|.+...|+.. ++++|.+++.+....-+ +..-|+
T Consensus 111 ~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~ 186 (906)
T PRK14720 111 LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYV 186 (906)
T ss_pred hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcch
Confidence 1122456678888888899999999999999986 66789999999999999 99999999988765411 111111
Q ss_pred HHHH---HH--HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 184 SRLA---AY--SRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 184 ~li~---~~--~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
.+.. -+ ....+.+.-..+.+.+... |..--..++.-+...|...++++++..+++.+.+..+...
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence 1111 11 1122333444444444432 3333345566666778888999999999999987655543
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=2.9e-05 Score=72.01 Aligned_cols=190 Identities=14% Similarity=0.099 Sum_probs=150.9
Q ss_pred hcCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHh
Q 036275 52 SIYFSDAHAVFEEMKRL-GITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLGQFE 126 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~ 126 (271)
.++.+.|.+++++.... ++.-. .-.|.++++.-...|.-+...++|++..+.. |+ ..|..|...|.+.+..+
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~~L~~iy~k~ek~~ 1547 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHLKLLGIYEKSEKND 1547 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHhhcch
Confidence 89999999999998764 33322 3346666666667788888999999998863 43 34788999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD---VVTWTSRLAAYSRKKLYRRCLEIFE 203 (271)
Q Consensus 127 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 203 (271)
+|.++++.|.+. +......|...+..+.+.++-++|..++.+..+. -|. .......+..=.+.|+.+.+..+|+
T Consensus 1548 ~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1548 EADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred hHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence 999999999886 3467889999999999999999999999998765 343 3344555555668899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 204 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
..+..- +--...|+..++.-.++|+.+.++.+|++....+..+.
T Consensus 1625 gll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1625 GLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 988752 33456799999999999999999999999988776554
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=3.3e-05 Score=69.28 Aligned_cols=136 Identities=4% Similarity=-0.065 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHH
Q 036275 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTS 184 (271)
Q Consensus 106 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ 184 (271)
..+...+..|.....+.|..++|..+++...+.. |.+......++.++.+.+++++|...+++.... .|+ ......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 3346667777777777777777777777777652 333556667777777777777777777777665 333 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
+..++.+.|++++|..+|++....+ +-+..++..+..++...|+.++|...|++..+...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 6666677777777777777777632 23356677777777777777777777777655433
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=0.0001 Score=61.45 Aligned_cols=208 Identities=10% Similarity=0.008 Sum_probs=131.7
Q ss_pred CCchhhHHHHHHHhhcC--ch----HHHHHH---hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 036275 27 PYPSHFMLINFLLLQHT--PN----LFVFIF---SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEG 95 (271)
Q Consensus 27 ~~~~~~~~~~f~~~~~~--y~----~ll~~~---~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~ 95 (271)
.|..+.+.+.|+++... |. ..+... ..++.++...-+.+...+ -.|+...+...+.+......-..+-.
T Consensus 216 Gydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~ 295 (484)
T COG4783 216 GYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAAD 295 (484)
T ss_pred CCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHH
Confidence 45566677778877752 11 122222 555666666666664432 34566666666665554433333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC
Q 036275 96 VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175 (271)
Q Consensus 96 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 175 (271)
++.+-.+. .-...-|..-+. +...|+.++|+..++.+... .|-|+..+....+.+.+.|+.++|.+.++.+...
T Consensus 296 ~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-- 369 (484)
T COG4783 296 LLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL-- 369 (484)
T ss_pred HHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--
Confidence 33222221 112233444443 44677888888888887776 3556677777788888888888888888888775
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 176 KPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 176 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
.|+ ....-.+..++.+.|++.+|..+++...... +-|...|..|.++|...|+..++..-..+..
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 455 5566677788888888888888888876653 5567788888888888887777766655543
No 100
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.46 E-value=4.4e-07 Score=47.97 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 213 (271)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 101
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.45 E-value=2.9e-07 Score=48.68 Aligned_cols=33 Identities=33% Similarity=0.592 Sum_probs=21.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 178 (271)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 102
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00011 Score=56.79 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=121.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC
Q 036275 97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176 (271)
Q Consensus 97 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 176 (271)
.+.+.......+......-...|+..|++++|++..... .+......=+..+.+..+.+-|.+.+++|.+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-- 167 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID-- 167 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 344444433433333344455688999999999887652 133444444566778889999999999999763
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHH
Q 036275 177 PDVVTWTSRLAAYSR----KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF 252 (271)
Q Consensus 177 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 252 (271)
+..|.+.|..++.. .+...+|.-+|++|.++ ..|+..+.+-..-++...|++++|..++++...+....+.++.
T Consensus 168 -ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 -EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred -hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 66788878777754 45688999999999875 5899999999999999999999999999999988877777776
Q ss_pred HH---Hhhccccccchhhhh
Q 036275 253 NL---YGEKGVARSNLGQYI 269 (271)
Q Consensus 253 ~~---~~~~G~~~~a~~~~~ 269 (271)
++ -...|...++..+++
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred HHHHHHHHhCCChHHHHHHH
Confidence 65 345677777776665
No 103
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.41 E-value=9.6e-06 Score=67.94 Aligned_cols=125 Identities=14% Similarity=0.169 Sum_probs=106.4
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG--SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180 (271)
Q Consensus 103 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 180 (271)
.+.+.+......+++.+....+.+++..++-+.... ....-..|..++|+.|.+.|..++++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345667888888999999999999999999888766 233345566799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 227 (271)
+++.||..+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988766667777777777776554
No 104
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=1.8e-05 Score=65.90 Aligned_cols=121 Identities=13% Similarity=0.113 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275 78 MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157 (271)
Q Consensus 78 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 157 (271)
..|+..+...++++.|..+++++.+.. |+. ...+++.+...++-.+|.+++.+..+. .+.+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 345556666788888888888888773 443 335777777778888888888877765 245667777777778888
Q ss_pred CCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275 158 GFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 158 g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m 205 (271)
++.+.|.++.+++... .|+. .+|..|..+|...|+++.|+..++.+
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 8888888888888776 4554 58888888888888888888777654
No 105
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.41 E-value=0.00013 Score=65.01 Aligned_cols=189 Identities=10% Similarity=0.070 Sum_probs=152.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|.+++.+..+.. +.....|..|...|-+.|+.+++...+-...... +-|...|..+-....+.|+++.|.-+
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 899999999999999886 6788999999999999999999988876555554 33678899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV----TWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
|.+..+.. +++...+---+..|-+.|+...|.+.|.++.....+.|-. +...+++.+...++.+.|.+.+.....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999884 6677777777889999999999999999998863222222 334445667778888899998888765
Q ss_pred -CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 208 -AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 208 -~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
.+-..+...++.++..+.+...++.+...+..+...
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r 345 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR 345 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc
Confidence 222455667888888889999999999988888763
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.40 E-value=0.00018 Score=67.01 Aligned_cols=200 Identities=15% Similarity=0.045 Sum_probs=158.1
Q ss_pred hHHHHHHHhhcC------------chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036275 32 FMLINFLLLQHT------------PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI 97 (271)
Q Consensus 32 ~~~~~f~~~~~~------------y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 97 (271)
.|++++++--.. |-+++..- -|.-+...++|+++.+..- .-..|..|...|.+.+.+++|-+++
T Consensus 1476 kAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell 1553 (1710)
T KOG1070|consen 1476 KARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKLLGIYEKSEKNDEADELL 1553 (1710)
T ss_pred HHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHH
Confidence 366666655443 66666655 7888899999999988642 3456888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC
Q 036275 98 NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175 (271)
Q Consensus 98 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 175 (271)
+.|.+.-- -....|...+..+.+..+-+.|..++.+..+. +|- ......-.+..-.+.|+.+.+..+|+.....-
T Consensus 1554 ~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay- 1630 (1710)
T KOG1070|consen 1554 RLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY- 1630 (1710)
T ss_pred HHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-
Confidence 99988732 47788999999999999999999999998876 222 34555666677789999999999999988652
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 036275 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG--GTAKVLISACSSEDQIEQVTTL 236 (271)
Q Consensus 176 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~ 236 (271)
+--...|+..|+.=.++|+.+.+..+|++....++.|-. ..|.-.+..-...|+-..++.+
T Consensus 1631 PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1631 PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 123568999999999999999999999999999888765 4567777777777776655544
No 107
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.40 E-value=4.3e-07 Score=47.76 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 211 (271)
+|+.+|.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444443333
No 108
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.39 E-value=7.5e-07 Score=46.79 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 177 (271)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999888877
No 109
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.36 E-value=7.4e-06 Score=54.67 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=50.7
Q ss_pred hHHHHHH-hcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036275 45 NLFVFIF-SIYFSDAHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTG--------NVAKCEGVINQMHKSGLKPDTFVINS 114 (271)
Q Consensus 45 ~~ll~~~-~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~ 114 (271)
+.+..+| .+++...-.+|..+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 4445555 7777777777777777777 677777777777766542 23345666667776667777777777
Q ss_pred HHHHHHc
Q 036275 115 MLNLYGR 121 (271)
Q Consensus 115 li~~~~~ 121 (271)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6665543
No 110
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.00056 Score=61.15 Aligned_cols=214 Identities=12% Similarity=0.099 Sum_probs=145.1
Q ss_pred HHHhhcC-chHHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036275 37 FLLLQHT-PNLFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111 (271)
Q Consensus 37 f~~~~~~-y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 111 (271)
...-|.. |..++.++ .|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++.... .|+..-
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eel 112 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEEL 112 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHH
Confidence 3333433 77778887 89999999888877666533 8888888989999999999999999988876 677777
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC----------HHHHHHHHHhchhCC-CCCCHH
Q 036275 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF----------IEKMEGLFQSLPAKR-LKPDVV 180 (271)
Q Consensus 112 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g-~~~~~~ 180 (271)
...+..+|.+.+++.+-.+.--++.+. ++-....+-.+++.....-. ..-|.+.++.+.+.+ -.-+..
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a 191 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA 191 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHH
Confidence 778888888888887766665555553 34455555555555543221 234667777766654 222233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHH
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFE-EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL 254 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 254 (271)
-...-...+...|.+++|+.++. ...+.-..-+...-+.-+..+...+.+++..++-.++...+...+..+++.
T Consensus 192 E~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~s 266 (932)
T KOG2053|consen 192 EIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDS 266 (932)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHH
Confidence 33333445567888999999984 444443334444445566777888899999999888888777765554443
No 111
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=0.001 Score=55.69 Aligned_cols=80 Identities=9% Similarity=0.118 Sum_probs=50.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++..|.++|....+- .|+...|.+.|+.=.+-+.++.|..+|++..-. .|++.+|--..+.-.+.|+...+..+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 67777777777776553 677777777777777777777777777666544 35555555545444555555444444
Q ss_pred HHHH
Q 036275 132 LTAM 135 (271)
Q Consensus 132 ~~~m 135 (271)
|+..
T Consensus 230 yerA 233 (677)
T KOG1915|consen 230 YERA 233 (677)
T ss_pred HHHH
Confidence 4433
No 112
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=3.4e-05 Score=64.37 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=98.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.++++.|..+|+++.+.. |+ ....+...+...++-.+|.+++++..+.. +.+......-.+.+.+.++.+.|.++
T Consensus 182 t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred cccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 889999999999998875 44 44558888888899999999999988764 34677777788889999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
.+++.+.. |-+-.+|..|..+|...|+++.|+-.+..+...
T Consensus 257 Ak~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 257 AKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999973 445679999999999999999999999988743
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=9.7e-05 Score=53.20 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHHHHH
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD--ISTYNILI 151 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li 151 (271)
.|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+........++ ....-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3566666666666666653221 012222344556666777777777776666542221 12333455
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (271)
..+...|++++|+..++...... .....+......+...|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666677777777765543332 2334455555666667777776666654
No 114
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.00028 Score=57.94 Aligned_cols=206 Identities=7% Similarity=-0.007 Sum_probs=112.5
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|+.++...+.+.+.... ..+...|..-.......+++..|+.+-++.++.. +.+...+-.=.+.+...|+.++|.-.
T Consensus 279 eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred ccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHH
Confidence 455555555444443321 2233334333444444444555555544444432 11222332223334444555555444
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHH------------------------------------HHHHHHhchhCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEK------------------------------------MEGLFQSLPAKRL 175 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~------------------------------------a~~~~~~m~~~g~ 175 (271)
|....... |-+...|..|+..|...|.+.+ |.++++.-...
T Consensus 357 FR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-- 433 (564)
T KOG1174|consen 357 FRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-- 433 (564)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--
Confidence 44444321 2234445555555555544444 44444443332
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHH--H
Q 036275 176 KPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY--F 252 (271)
Q Consensus 176 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~ 252 (271)
.|+ ....+.+...+...|..+.+..+++..+.. .||....+.|.+.+...+.++++.+.|....+.++..-..+ +
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 344 234566667778888888999998887664 68888889999999999999999999988877776655443 3
Q ss_pred HHHhhccccccc
Q 036275 253 NLYGEKGVARSN 264 (271)
Q Consensus 253 ~~~~~~G~~~~a 264 (271)
+.+.|.-...+|
T Consensus 512 ~~lEK~~~~~DA 523 (564)
T KOG1174|consen 512 RLLEKSDDESDA 523 (564)
T ss_pred HHHHhccCCCCc
Confidence 334444443333
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=5.2e-05 Score=64.35 Aligned_cols=184 Identities=9% Similarity=0.016 Sum_probs=144.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 036275 83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162 (271)
Q Consensus 83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 162 (271)
-+.+.|++.+|.-.|+...+.... +...|..|...-...++-..|+..+.+..+.. +.+....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 356788999999999988887533 66789999999999999999999999988863 4457777788878877776666
Q ss_pred HHHHHHhch------------------------------------------hCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275 163 MEGLFQSLP------------------------------------------AKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 163 a~~~~~~m~------------------------------------------~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
|.+.++.=. ..+..+|+.....|.-.|.-.|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 666655421 11223566777788888888999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccccccchhhhh
Q 036275 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 201 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~~~ 269 (271)
.|+..+... +-|..+|+.|-.+++...+..+|+.-|++..+-.+.-..+ +--.|...|.+++|++.|+
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999988763 4467889999999999999999999999998765544433 4445889999999999886
No 116
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.29 E-value=0.0008 Score=58.19 Aligned_cols=118 Identities=11% Similarity=0.104 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036275 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 226 (271)
-.++..|-+.|+++.|...++....+ .|+. ..|..=.+.+...|++++|...+++.++.. .||...=..-.....+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 34556666777777777777766654 5553 344455577777788888888877777654 3444443344555566
Q ss_pred cCcHHHHHHHHHHHHhcccchhHHH------------HHHHhhccccccchhhh
Q 036275 227 EDQIEQVTTLVRTMHKDMKTALPIY------------FNLYGEKGVARSNLGQY 268 (271)
Q Consensus 227 ~g~~~~a~~~~~~~~~~~~~~~~~~------------~~~~~~~G~~~~a~~~~ 268 (271)
.++.++|.++.....+.+......+ -.+|.+.|++..|++.|
T Consensus 452 An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 6777888877777776664222111 23477777777777665
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.00023 Score=60.27 Aligned_cols=203 Identities=11% Similarity=0.095 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG---NVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~ 130 (271)
-+++..+++.....-..-+..+|..+...=-..- ..+.....++++... ..+|+ .+|-.+|+.-.+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 4556666665544322224444443332222222 256667777777665 33444 357778888888888999999
Q ss_pred HHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHh-chhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 131 VLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQS-LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 131 ~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
+|.+..+.+..+ ++.+.++++..||. ++.+-|.++|+. ++..| -++.--...+.-+...++-..|..+|++.+..
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999987777 67788888888775 778899999997 44443 23444567777788889999999999999988
Q ss_pred CCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhccc-------chhHHHHHHHhhcccc
Q 036275 209 GCYPDG--GTAKVLISACSSEDQIEQVTTLVRTMHKDMK-------TALPIYFNLYGEKGVA 261 (271)
Q Consensus 209 ~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~G~~ 261 (271)
++.|+. .+|..++..-+.-|++..+.++-+++....+ .....+++.|.-.+..
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 766664 7899999999999999999999888765443 3334455555444443
No 118
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=0.00033 Score=58.48 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=149.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.+++..|..+|+.....+ .-+...|---+.+=.+.+.+..|..+|++....=...| ..|-..+.+--..|+...|.++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 778889999999998765 44777787888888899999999999999987632322 3455666667788999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GC 210 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~ 210 (271)
|++-.+- .|+...|.+.|+.-.+.+.++.|..++++.... .|++.+|-...+-=.+.|+...|..++....+. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9998885 799999999999999999999999999998875 589999999988888999999999999987763 21
Q ss_pred -CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275 211 -YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 211 -~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
.-+...+.++..--..+..++.|.-+|+-..+.-+.
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 112334444444445677888888888877665433
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00059 Score=52.48 Aligned_cols=158 Identities=11% Similarity=0.110 Sum_probs=123.0
Q ss_pred cCChHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 036275 87 TGNVAKCEGVINQMHKS---G-LKPDTFV-INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161 (271)
Q Consensus 87 ~~~~~~a~~~~~~m~~~---~-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 161 (271)
..+.++..+++.++... | ..++..+ |..++-+....|+.+.|...++.+... ++-+..+-..-.--+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 35677888888777543 4 5556544 666777778899999999999999876 3444444333334456689999
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
+|+++++.+.+.. +.|.+++-.=+...-..|...+|.+-+..-.+. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999885 446778887787888888888998888887775 67899999999999999999999999999987
Q ss_pred hcccch
Q 036275 242 KDMKTA 247 (271)
Q Consensus 242 ~~~~~~ 247 (271)
=..|..
T Consensus 182 l~~P~n 187 (289)
T KOG3060|consen 182 LIQPFN 187 (289)
T ss_pred HcCCCc
Confidence 655544
No 120
>PLN02789 farnesyltranstransferase
Probab=98.25 E-value=0.0016 Score=53.29 Aligned_cols=185 Identities=9% Similarity=-0.018 Sum_probs=135.6
Q ss_pred hc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHH
Q 036275 52 SI-YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV--AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128 (271)
Q Consensus 52 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 128 (271)
.| +++++++.++++.+.+ +-+..+|+...-.+.+.|+. ++++.+++++.+...+ +.+.|+....++...|+++++
T Consensus 84 L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 84 LDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred cchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHH
Confidence 44 6899999999998876 55777888776666666653 6788899999887643 788899988889999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcC---CCH----HHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc----CCHHH
Q 036275 129 EEVLTAMEKGSYAADISTYNILINIYGRG---GFI----EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK----KLYRR 197 (271)
Q Consensus 129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~ 197 (271)
++.++++.+.+ +.+..+|+.....+.+. |.. ++..+...++.... +-|...|+.+...+... ++..+
T Consensus 162 L~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 162 LEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchh
Confidence 99999999875 45677787777666554 222 45666665655542 23567888888887763 34466
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------------cHHHHHHHHHHHH
Q 036275 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSED------------------QIEQVTTLVRTMH 241 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~~~ 241 (271)
|.+.+.+....+ +.+......|+..+.... ..++|.+++..+.
T Consensus 240 ~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 240 VSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888888876654 446778888888887532 3467888888884
No 121
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.25 E-value=3e-05 Score=51.85 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhchhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 036275 148 NILINIYGRGGFIEKMEGLFQSLPAKRL-KPDVVTWTSRLAAYSRKK--------LYRRCLEIFEEMIDAGCYPDGGTAK 218 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~ 218 (271)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. ..-+.+.+++.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555566777777777777777777 777777877777766532 2335677888888888889999998
Q ss_pred HHHHHHhc
Q 036275 219 VLISACSS 226 (271)
Q Consensus 219 ~l~~~~~~ 226 (271)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887654
No 122
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.20 E-value=0.00043 Score=59.80 Aligned_cols=220 Identities=10% Similarity=0.036 Sum_probs=111.9
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
|..++..| .+++...++..+.+.+. .+--..+.....-.+...|+.++|......-....+. +.+.|+.+.-.+...
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 44556666 66666666666665552 2222333333333445556666666665555543322 455566666666666
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.++++|++.|......+ +.|...+.-+.-.-+..|+++.......+..+. .| ....|..+..++--.|+...|..+
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666543 344555555555555555665555555555443 22 234555555666666666666666
Q ss_pred HHHHHHCC-CCCCHHHHHHHHH------HHhccCcHHHHHHHHHHHHhccc---chhHHHHHHHhhccccccchhhh
Q 036275 202 FEEMIDAG-CYPDGGTAKVLIS------ACSSEDQIEQVTTLVRTMHKDMK---TALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 202 ~~~m~~~~-~~p~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+++..... -.|+...|..... .....|.++.|.+.+.+..+.-. ..-..-.+++.+.|+.++|+..|
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 66555432 1344433332211 12344555555554444433211 11222334455555555555544
No 123
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00017 Score=56.69 Aligned_cols=193 Identities=11% Similarity=0.087 Sum_probs=139.4
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM-LNLYG 120 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~ 120 (271)
+++.+..+ ..++++|++++..-.++. +.+....+.|..+|....++..|-..|+++-.. -|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 66777766 888999999998877765 447888889999999999999999999999876 4555555432 45667
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
+.+.+..|.++...|.... ..-......-.......+++..+..++++....| +..+.+...-...+.|++++|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8888999999998886641 1112222222333456788889999998887543 44445555555568899999999
Q ss_pred HHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275 201 IFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 201 ~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
-|....+ .|..| ...|+..+.- .+.|+.+.|.++..++.++|.
T Consensus 166 kFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 166 KFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhh
Confidence 9998877 55554 4567765544 456899999999999877663
No 124
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.18 E-value=2.2e-06 Score=43.86 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=9.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhch
Q 036275 147 YNILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 147 ~~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
|+++|++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 125
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00011 Score=59.09 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=129.2
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN-------VAKCEGVINQMHKSGLKPDTF-VINS 114 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~-~~~~ 114 (271)
.|.+|..+ .+++.+|..+.+++. |.++.-|-.-.-.+...|+ ..-|.+.|+-.-+++..-|.. .-.+
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 66666656 999999998877652 3344444222222333332 445666666555555544433 2445
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH-HHHHHhcC
Q 036275 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR-LAAYSRKK 193 (271)
Q Consensus 115 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g 193 (271)
+...+.-..++|+++.++..+..-=...|...+ .+..+++..|++.+|+++|-++....++ |..+|..+ .++|.+.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 666666777899999999888876333344444 5889999999999999999888765444 56677555 57889999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275 194 LYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
.+..|+.++-.+.. +.+..+.. .+..-|-+.+++--|-+.|+.++..++.+
T Consensus 443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 99999887655432 22333333 34455889999999999999887765543
No 126
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.13 E-value=0.00018 Score=57.83 Aligned_cols=142 Identities=9% Similarity=0.105 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR-LGQFEKMEEVLTAMEKGSYAADISTYNILINI 153 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 153 (271)
.+|..+|+..-+.+..+.|..+|.+..+.+ ..+...|-.....-.. .++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467777777777777888888888887543 2234445444444233 45666688888887776 56677778888888
Q ss_pred HHcCCCHHHHHHHHHhchhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275 154 YGRGGFIEKMEGLFQSLPAKRLKPDV----VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222 (271)
Q Consensus 154 ~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 222 (271)
+.+.|+.+.|..+|++.... .|.. ..|...+.-=.+.|+.+.+.++.+++.+. .|+......++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 88888888888888887654 2333 47788887777888888888888777764 334333333333
No 127
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.13 E-value=3.2e-06 Score=43.23 Aligned_cols=30 Identities=30% Similarity=0.644 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 210 (271)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888877664
No 128
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=0.00018 Score=49.49 Aligned_cols=95 Identities=12% Similarity=0.000 Sum_probs=39.7
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC--CCHHHHHHHHHHH
Q 036275 114 SMLNLYGRLGQFEKMEEVLTAMEKGSY--AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK--PDVVTWTSRLAAY 189 (271)
Q Consensus 114 ~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~ 189 (271)
.+...+.+.|++++|.+.++.+.+..- +.....+..+..++.+.|++++|.+.|+.+...... .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444444455555554444443210 001223333444444555555555555544432100 1123344444444
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 036275 190 SRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~ 208 (271)
...|+.++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4455555555555544443
No 129
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.12 E-value=0.002 Score=56.84 Aligned_cols=121 Identities=7% Similarity=-0.028 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036275 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226 (271)
Q Consensus 147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 226 (271)
|......+.+.++.++|...+.+..... ......|......+...|.+++|.+.|...+..+ +-+....+++...+..
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455667778888888887777776542 3345567777777888899999999998877653 3345677888888889
Q ss_pred cCcHHHHHH--HHHHHHhcccchhHH---HHHHHhhccccccchhhhh
Q 036275 227 EDQIEQVTT--LVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 227 ~g~~~~a~~--~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~~~ 269 (271)
.|+..-+.. ++.++.+-++..... +-..+.+.|+.+.|.+=|.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 898887777 888888877666554 4556899999998877653
No 130
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.0013 Score=54.22 Aligned_cols=144 Identities=8% Similarity=0.070 Sum_probs=88.0
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
.+++..|..+-+...+.. +.++..+-.-...+...|+.++|.-.|+..... .| +...|.-|+.+|...|.+.+|.-
T Consensus 313 ~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHH
Confidence 344445555544444432 334555555566778889999999999987654 33 56899999999999999888765
Q ss_pred HHHHHHHC----------------------------------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275 201 IFEEMIDA----------------------------------GCYPDG-GTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 201 ~~~~m~~~----------------------------------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
+-++.... .+.|+. .....+...|...|....+..++++......
T Consensus 390 ~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~ 469 (564)
T KOG1174|consen 390 LANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP 469 (564)
T ss_pred HHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence 54432211 112332 2344455556666666666666666655443
Q ss_pred ch--hHHHHHHHhhccccccchhhh
Q 036275 246 TA--LPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 246 ~~--~~~~~~~~~~~G~~~~a~~~~ 268 (271)
.. ...+-+.+.-...+++|.+.|
T Consensus 470 D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 470 DVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33 344555666666666666655
No 131
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.09 E-value=0.004 Score=54.17 Aligned_cols=220 Identities=12% Similarity=0.108 Sum_probs=141.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------------ChHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG----------------------NVAKCEGVINQ 99 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~ 99 (271)
|.+|...| .|.++.|.++|++..+. ..+...|..+.++|++-. +++..+.-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 99999999 99999999999998775 346666777777765321 12233344444
Q ss_pred HHHCC-----------CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC------ChhhHHHHHHHHHcCCCHHH
Q 036275 100 MHKSG-----------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA------DISTYNILINIYGRGGFIEK 162 (271)
Q Consensus 100 m~~~~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~ 162 (271)
+...+ -+-++..|..-+.. ..|+..+....+.+..+. +.| -...|..+...|-..|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 44331 11133444444333 456677778888887764 233 23567788889999999999
Q ss_pred HHHHHHhchhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHH
Q 036275 163 MEGLFQSLPAKRLKPD---VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-----------------PDGGTAKVLIS 222 (271)
Q Consensus 163 a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------------p~~~~~~~l~~ 222 (271)
|..+|++..+-..+-- ..+|......=.+..+++.|.++++......-. -+...|...++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999887543221 245555556666788888898888765432111 12234555566
Q ss_pred HHhccCcHHHHHHHHHHHHhcccchhHHHHH---HHhhccccccchhhh
Q 036275 223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYFN---LYGEKGVARSNLGQY 268 (271)
Q Consensus 223 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~G~~~~a~~~~ 268 (271)
.-...|-++....+++++.+-...++...++ .+..+..+.++.+.|
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666788888889999888776666555444 244555555555544
No 132
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=9.1e-05 Score=48.10 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=43.0
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 114 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444455555555555555554432 2223444445555555555555555555544332 112234444444555555
Q ss_pred CHHHHHHHHHHHH
Q 036275 194 LYRRCLEIFEEMI 206 (271)
Q Consensus 194 ~~~~a~~~~~~m~ 206 (271)
+.++|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555554443
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=0.00017 Score=49.72 Aligned_cols=104 Identities=12% Similarity=-0.015 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRL--KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG--CYPDGGTAKVL 220 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l 220 (271)
.++..+...+.+.|++++|.+.|..+..... ......+..+..++...|++++|...++.+.... .......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566788889999999999999999986521 1124567778999999999999999999988642 11124567777
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 221 ISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 221 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
..++...|+.++|...++++.+..+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 8889999999999999999988766543
No 134
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.08 E-value=9.4e-05 Score=48.03 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275 77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156 (271)
Q Consensus 77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 156 (271)
+..+...+...|++++|..++++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555556666666666666665543 1233445556666666666666666666665542 3334455666666666
Q ss_pred CCCHHHHHHHHHhchh
Q 036275 157 GGFIEKMEGLFQSLPA 172 (271)
Q Consensus 157 ~g~~~~a~~~~~~m~~ 172 (271)
.|++++|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666665543
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.07 E-value=0.00049 Score=62.95 Aligned_cols=190 Identities=9% Similarity=0.031 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHhHHHHH------------------
Q 036275 71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF-VINSMLNLYGRLGQFEKMEEV------------------ 131 (271)
Q Consensus 71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~------------------ 131 (271)
+.+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+.+..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence 346788899999999999999999999877765 33332 233333356666655555444
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 211 (271)
...|.+. .-+...+..+..+|-+.|+.++|..+++++.+.. .-|..+.|.+...|... +.++|.+++.+.+..-+
T Consensus 106 ~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i- 180 (906)
T PRK14720 106 CDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI- 180 (906)
T ss_pred HHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH-
Confidence 2222221 1233577788889999999999999999999876 34678899999999999 99999999988765411
Q ss_pred CCHHHHHHHHH----HH-hccCcHHHHHHHHHHHHhcc-----cchhHHHHHHHhhccccccchhhh
Q 036275 212 PDGGTAKVLIS----AC-SSEDQIEQVTTLVRTMHKDM-----KTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 212 p~~~~~~~l~~----~~-~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+..-|+.+.. .| ....+++...++.+.+...- .....-+++.|.+..+++++++.+
T Consensus 181 -~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 181 -KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred -hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 1111221111 11 23344555555655555431 223344567788888787777655
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.06 E-value=0.00038 Score=51.66 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD--TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 150 (271)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445566777777788888888888888776543322 3567777888888888888888888877752 3346666677
Q ss_pred HHHHHcCCCHHHHH
Q 036275 151 INIYGRGGFIEKME 164 (271)
Q Consensus 151 i~~~~~~g~~~~a~ 164 (271)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777654433
No 137
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.06 E-value=0.00018 Score=54.09 Aligned_cols=87 Identities=22% Similarity=0.358 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------CCHhHHHHH
Q 036275 73 TMKSHMLLLTAYSKT-----GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL----------------GQFEKMEEV 131 (271)
Q Consensus 73 ~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------------g~~~~a~~~ 131 (271)
+-.+|..++..|.+. |.++-....++.|.+-|+.-|..+|+.|++.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 444455555544432 44555555555566666666666666666554431 123456666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGF 159 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~ 159 (271)
+++|...|+-||..++..+++.|++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 6666666666666666666666665554
No 138
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.05 E-value=0.0021 Score=50.52 Aligned_cols=178 Identities=10% Similarity=0.048 Sum_probs=98.4
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSH---MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 119 (271)
|..-...+ .|++++|.+.|+.+.... |-+...- -.+..++.+.+++++|...+++..+....-...-+...+.+.
T Consensus 36 Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 36 YATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 55555666 778888888887776653 2222222 345566677777888888877777663221122232333332
Q ss_pred Hc--cC---------------CH---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH
Q 036275 120 GR--LG---------------QF---EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179 (271)
Q Consensus 120 ~~--~g---------------~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 179 (271)
+. .+ |. .+|+..|+.+.+ -|=.+.-..+|..-+..+... =.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~----la 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR----LA 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH----HH
Confidence 21 11 11 123333333333 333333344454444444321 01
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDA--GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
..--.+.+-|.+.|.+..|..-++.+++. +.+........++.++...|..++|..+...+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11124455577888888888888888763 333445667777888888888888888776554
No 139
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00012 Score=57.63 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC-------------
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA------------- 142 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------------- 142 (271)
+.+...-...+.|+.+.|.+-|+...+-+.-.....|+..+.. .+.|+.+.|.++..++.++|+..
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 3333333445678888888888777765444355567665544 46677888888888887766421
Q ss_pred Ch---------------hhHHHHHHHHHcCCCHHHHHHHHHhchhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 143 DI---------------STYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 143 ~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
|+ ..+|.-...+.+.|+++.|.+.+..|.-. ....|++|...+.-.- -.+++.+..+-+.-++
T Consensus 225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL 303 (459)
T ss_pred chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH
Confidence 11 11233333456778888888888887632 2345666666554332 2234444444444444
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275 207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 207 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
+.+ +....||..++-.|++..-++.|-+++-+
T Consensus 304 ~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 304 QQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 443 23456777777777777777766665543
No 140
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.04 E-value=0.00019 Score=54.02 Aligned_cols=105 Identities=17% Similarity=0.396 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHcc-----CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275 106 KPDTFVINSMLNLYGRL-----GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180 (271)
Q Consensus 106 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 180 (271)
..|..+|..+++.|.+. |..+-....+..|.+-|+..|..+|+.|++.+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 55888899999988754 6777778888899999999999999999998765 3221 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 229 (271)
.+..+...|- .+-+-|.+++++|...|+-||.+|+..+++.+.+.+.
T Consensus 107 ~fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111111 2334556666666666666666666666666655443
No 141
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.001 Score=56.92 Aligned_cols=112 Identities=10% Similarity=0.052 Sum_probs=79.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCCHhHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY--GRLGQFEKME 129 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~a~ 129 (271)
.|++++|++...++...+ +-+...+..=+-+.++.+++++|+.+.+.-... ..+...+ +=.+| .+.+..|+|.
T Consensus 25 ~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLNKLDEAL 99 (652)
T ss_pred chHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcccHHHHH
Confidence 899999999999998776 667778888888889999999998554332210 1111111 23333 4788999999
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 130 EVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 130 ~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
..++ |..+ |..+...-...+.+.|++++|.++++.+.+.
T Consensus 100 k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 100 KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 8887 2333 3446666777888999999999999988655
No 142
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.01 E-value=0.00025 Score=57.01 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI-YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 188 (271)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|-..... |...++.+.|.++|+...+. ...+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888999999999999999999998653 3345556555555 33367777799999998765 45577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275 189 YSRKKLYRRCLEIFEEMIDAGCYPDG----GTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
+...++.+.|..+|++.... .|.. ..|...++.-.+.|+++.+..+.+++.+..+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999998875 3333 48999999999999999999999998775433
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.00 E-value=0.00025 Score=50.84 Aligned_cols=83 Identities=8% Similarity=-0.032 Sum_probs=38.1
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|.++|+.+...+ +-+..-|-.|..++-..|++++|+..|.......+ -|+..+-.+..++...|+.+.|.+.
T Consensus 48 ~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~a 125 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKA 125 (157)
T ss_pred CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHH
Confidence 455555555554444443 23444444444444444555555555544444432 1334444444444444555554444
Q ss_pred HHHHH
Q 036275 132 LTAME 136 (271)
Q Consensus 132 ~~~m~ 136 (271)
|+...
T Consensus 126 F~~Ai 130 (157)
T PRK15363 126 LKAVV 130 (157)
T ss_pred HHHHH
Confidence 44433
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=0.0003 Score=58.62 Aligned_cols=89 Identities=12% Similarity=-0.019 Sum_probs=78.6
Q ss_pred HHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHh
Q 036275 48 VFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE 126 (271)
Q Consensus 48 l~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 126 (271)
..++ .|++++|++.|++..+.+ +.+...|..+..++.+.|++++|+..+++..+... .+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 4555 999999999999999876 56888999999999999999999999999998752 36677888999999999999
Q ss_pred HHHHHHHHHHhC
Q 036275 127 KMEEVLTAMEKG 138 (271)
Q Consensus 127 ~a~~~~~~m~~~ 138 (271)
+|+..|++..+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.98 E-value=0.00062 Score=50.56 Aligned_cols=128 Identities=10% Similarity=-0.035 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
..+..+...+...|++++|...|++..+....+ ....+..+...+.+.|++++|...+++..... +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 446667777778888888888888877643222 13567777788888888888888888776642 113455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhcc
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKG 259 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G 259 (271)
.+...|+...+..-++... ..+++|.+++++..+.++.........+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchhHHHHHHHHHhcC
Confidence 6666666444332222211 11455556666655555554444444444444
No 146
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.98 E-value=0.0019 Score=60.83 Aligned_cols=156 Identities=7% Similarity=-0.069 Sum_probs=97.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHcc
Q 036275 52 SIYFSDAHAVFEEMKRLGITPT----MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL---KPD--TFVINSMLNLYGRL 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~li~~~~~~ 122 (271)
.|++++|...+++..+..-..+ ....+.+...+...|++++|...+++.....- .+. ......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 8889999888888765311112 12345566667778899988888877764311 111 23445566677788
Q ss_pred CCHhHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC--CCCC--CHHHHHHHHHHHHh
Q 036275 123 GQFEKMEEVLTAMEKG----SYA--A-DISTYNILINIYGRGGFIEKMEGLFQSLPAK--RLKP--DVVTWTSRLAAYSR 191 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~--~~~~~~~li~~~~~ 191 (271)
|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999888887775542 211 1 1233445566677778998888888876542 1112 12344445566778
Q ss_pred cCCHHHHHHHHHHHHH
Q 036275 192 KKLYRRCLEIFEEMID 207 (271)
Q Consensus 192 ~g~~~~a~~~~~~m~~ 207 (271)
.|++++|...+.....
T Consensus 625 ~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 625 RGDLDNARRYLNRLEN 640 (903)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888777643
No 147
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.98 E-value=0.002 Score=60.71 Aligned_cols=217 Identities=11% Similarity=0.092 Sum_probs=136.3
Q ss_pred hcCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGI---TP--TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLK--P-DTFVINSMLNLY 119 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~ 119 (271)
.|++++|...+.+.....- .+ ...++..+...+...|+++.|...+++.... +.. + ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 9999999999988764311 11 1234556667788899999999998776542 221 1 223345566667
Q ss_pred HccCCHhHHHHHHHHHHhC--CCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC--CCCCHH--HH--HHHHHHH
Q 036275 120 GRLGQFEKMEEVLTAMEKG--SYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAKR--LKPDVV--TW--TSRLAAY 189 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~--~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~--~~--~~li~~~ 189 (271)
...|++++|...+++.... ...+ ....+..+...+...|+.++|.+.+++..... ...... .. ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 7889999999998876542 1112 23445556778889999999999988875321 111110 11 1122444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHhcc----cch-----hHHHHHHHhh
Q 036275 190 SRKKLYRRCLEIFEEMIDAGCYPD---GGTAKVLISACSSEDQIEQVTTLVRTMHKDM----KTA-----LPIYFNLYGE 257 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-----~~~~~~~~~~ 257 (271)
...|+.+.|...+........... ......+..++...|+.++|..++.+..... ... ...+-.+|..
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 567889998888777554221111 1113456667888899999999998876432 111 1223455788
Q ss_pred ccccccchhhh
Q 036275 258 KGVARSNLGQY 268 (271)
Q Consensus 258 ~G~~~~a~~~~ 268 (271)
.|+.++|...+
T Consensus 744 ~G~~~~A~~~L 754 (903)
T PRK04841 744 QGRKSEAQRVL 754 (903)
T ss_pred cCCHHHHHHHH
Confidence 89888887654
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.97 E-value=0.00053 Score=50.67 Aligned_cols=63 Identities=8% Similarity=-0.121 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 172 (271)
..+..+...+...|++++|...|+......-.+ ...++..+...+...|++++|.+.+++...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334455555555566666666555554431111 123455555555555555555555555544
No 149
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.94 E-value=0.00057 Score=60.19 Aligned_cols=185 Identities=14% Similarity=0.208 Sum_probs=89.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
..+|.+|+.+++.+..+.+ -+.-|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|+|+.|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 4445555555555544321 2233444555555555555555554321 1233445555555555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 211 (271)
-++... -..+.+.|-+-..-.-+.|++.+|++++-.+- .|+ ..|..|-+.|..+...++..+..- .
T Consensus 814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d 879 (1636)
T KOG3616|consen 814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---D 879 (1636)
T ss_pred HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---h
Confidence 433322 12334444444444445555555555443322 122 234455555555555554443221 1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchh
Q 036275 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLG 266 (271)
Q Consensus 212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~ 266 (271)
.-..|...+..-+...|++..|...|-+.. .+...+++|..+|.+.+|.+
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~-----d~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----DFKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh-----hHHHHHHHhhhhhhHHHHHH
Confidence 112345556666667777777776665542 23455666666666666554
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.93 E-value=0.00023 Score=52.61 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHhHHHHH
Q 036275 55 FSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 55 ~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
+..+.+.+..+. ..+..-....|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444443 22222235566777777888899999999998887663322 234678888888899999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHH-------cCCCHHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINIYG-------RGGFIEKMEGLFQ 168 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~~~a~~~~~ 168 (271)
++...... +....++..+...+. ..|+++.|...++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 98887652 334556666666666 5556554444443
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00049 Score=57.32 Aligned_cols=102 Identities=8% Similarity=-0.054 Sum_probs=75.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 036275 81 LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 160 (271)
...+...|++++|++.|++.++... -+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4456677888888888888887653 356677778888888888888888888887763 44567788888888888888
Q ss_pred HHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275 161 EKMEGLFQSLPAKRLKPDVVTWTSRL 186 (271)
Q Consensus 161 ~~a~~~~~~m~~~g~~~~~~~~~~li 186 (271)
++|...|++..+. .|+......++
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 8888888887765 34544444443
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=3.3e-05 Score=49.94 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=39.9
Q ss_pred cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 53 IYFSDAHAVFEEMKRLGIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+. .+....-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5566666666666554311 1333344456666666666666666655 22111 1222333445556666666666666
Q ss_pred HHH
Q 036275 132 LTA 134 (271)
Q Consensus 132 ~~~ 134 (271)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 553
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.88 E-value=2.9e-05 Score=50.24 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=32.7
Q ss_pred CCHhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSY-AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~ 200 (271)
|+++.|+.+++++.+..- .++...+-.+..+|.+.|++++|..+++. ... .|+ ......+.+++.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 445555555555544321 01222333345555555555555555554 111 111 1222233444555555555555
Q ss_pred HHH
Q 036275 201 IFE 203 (271)
Q Consensus 201 ~~~ 203 (271)
+++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.86 E-value=0.0018 Score=46.50 Aligned_cols=94 Identities=4% Similarity=-0.058 Sum_probs=59.4
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 036275 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191 (271)
Q Consensus 112 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 191 (271)
.-.+...+...|++++|.++|+-+.... +-+..-|-.|..++-..|++++|...|........ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344455556677777777777666543 33455566666667777777777777776665542 355666666677777
Q ss_pred cCCHHHHHHHHHHHHH
Q 036275 192 KKLYRRCLEIFEEMID 207 (271)
Q Consensus 192 ~g~~~~a~~~~~~m~~ 207 (271)
.|+.+.|.+.|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777766554
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.0012 Score=53.31 Aligned_cols=198 Identities=13% Similarity=0.120 Sum_probs=124.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH--H
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRL----GITP-TMKSHMLLLTAYSKTGNVAKCEGVINQMHK----SGLKPDT--F 110 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~--~ 110 (271)
|+.....| .|++++|.+.|.+.... +-+. -...|.....+|.+ .++++|...+++..+ .| .|+. .
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHHH
Confidence 66677777 89999999988887432 2111 23345555555544 489999999987754 34 3333 4
Q ss_pred HHHHHHHHHHcc-CCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC-----CCCH
Q 036275 111 VINSMLNLYGRL-GQFEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-----KPDV 179 (271)
Q Consensus 111 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~~~~ 179 (271)
.+..+...|-.. |++++|.+.|++..+. +.+. -...+..+...+.+.|++++|.++|+++...-. +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 577888888888 9999999999887642 3111 145667788899999999999999998765422 2222
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhc--cCcHHHHHHHHHHHHhc
Q 036275 180 V-TWTSRLAAYSRKKLYRRCLEIFEEMIDA--GCYPD--GGTAKVLISACSS--EDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 180 ~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~ 243 (271)
. .|-..+-.+...||...|.+.+++.... ++..+ ......|+.++-. ...++.+..-|+.+.+-
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 2 3344455677789999999999998754 33333 3456677777654 23344555555544433
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=0.00015 Score=44.68 Aligned_cols=62 Identities=18% Similarity=0.312 Sum_probs=36.8
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 036275 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 185 (271)
+.|++++|+++|+.+.+.. |-+...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4566666666666666552 335556666666666777777777777666655 3454444433
No 157
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.81 E-value=0.0018 Score=57.17 Aligned_cols=79 Identities=15% Similarity=0.270 Sum_probs=42.8
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH
Q 036275 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195 (271)
Q Consensus 116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 195 (271)
+.+......|.+|+.+++.+...+ ....-|..+.+-|+..|+++.|+++|.+.- .++..|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 334445555666666666555542 233445555566666666666666665332 244455566666666
Q ss_pred HHHHHHHHHH
Q 036275 196 RRCLEIFEEM 205 (271)
Q Consensus 196 ~~a~~~~~~m 205 (271)
+.|.++-.+.
T Consensus 808 ~da~kla~e~ 817 (1636)
T KOG3616|consen 808 EDAFKLAEEC 817 (1636)
T ss_pred HHHHHHHHHh
Confidence 6665554443
No 158
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.80 E-value=0.0024 Score=44.07 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=51.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 036275 81 LTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA---DISTYNILINIYG 155 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~ 155 (271)
..++-..|+.++|+.+|++....|...+. ..+-.+...+...|++++|..++++..... +. +......+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 33444556666666666666665544331 233344555556666666666666555431 11 1122222333455
Q ss_pred cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189 (271)
Q Consensus 156 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 189 (271)
..|+.++|.+.+-..... +...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 566666666665544432 333444444444
No 159
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.79 E-value=0.013 Score=47.43 Aligned_cols=196 Identities=10% Similarity=-0.010 Sum_probs=143.8
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
-..++.++ .|+...|+.....+.+.. +-|+..|..-..+|...|++..|+.=++...+..-. +..++--+-..+...
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhh
Confidence 34556666 999999999999998875 569999999999999999999998877777665433 555666777788899
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHH-------------HHHHHcCCCHHHHHHHHHhchhCCCCCCHH---HHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNIL-------------INIYGRGGFIEKMEGLFQSLPAKRLKPDVV---TWTSRL 186 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li 186 (271)
|+.+.++....+-.+. .||...+-.. +....+.++|.++.+..+...+........ .+..+-
T Consensus 237 gd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 9999999888887774 5665432111 223456677777777777766653221122 344555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275 187 AAYSRKKLYRRCLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
.++...+++.+|.+...+.++. .|| ..++.--..+|.-..++|.|..=|+...+-+.
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 6777889999999999988875 455 77777778888888888888888887765443
No 160
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.79 E-value=0.013 Score=47.43 Aligned_cols=211 Identities=14% Similarity=0.130 Sum_probs=151.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCC--CHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITP--TMKSH------------MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~--~~~~~------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 117 (271)
.|.+++|..=|+...++.... ....+ ...+..+...|+...|++....+++.. +.|...|..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 899999999999998775211 11111 233445667799999999999999875 557788888899
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH----HHHH--------
Q 036275 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT----WTSR-------- 185 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~----~~~l-------- 185 (271)
+|...|++..|+.=+....+.. ..++.++--+-..+..-|+.+.++...++..+. .||... |..|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999987777666553 345666777888889999999999999988775 455432 2222
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHH---HHHHh
Q 036275 186 -LAAYSRKKLYRRCLEIFEEMIDAGCYPD-----GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY---FNLYG 256 (271)
Q Consensus 186 -i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~~ 256 (271)
+....+.++|.++.+..+...+.. |. ...+..+-.++...+++.+|++...+..+..+....++ .++|.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 223456788888888888777653 33 23455566677888999999999999988777655554 34566
Q ss_pred hccccccchhhh
Q 036275 257 EKGVARSNLGQY 268 (271)
Q Consensus 257 ~~G~~~~a~~~~ 268 (271)
---.+++|+.-|
T Consensus 353 ~dE~YD~AI~dy 364 (504)
T KOG0624|consen 353 GDEMYDDAIHDY 364 (504)
T ss_pred hhHHHHHHHHHH
Confidence 666666666554
No 161
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.012 Score=48.20 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 224 (271)
.+.+..|.-+...|+...|.++-.+.. .|+..-|...+++++..++|++..++... .. . +.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK-s--PIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK-S--PIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC-C--CCChHHHHHHH
Confidence 355666777888999999999987775 36889999999999999999988776432 22 2 35688899999
Q ss_pred hccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhh
Q 036275 225 SSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 225 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~ 267 (271)
.+.|...+|..++.+ .+...-+.+|.++|.+.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHh------CChHHHHHHHHHCCCHHHHHHH
Confidence 999999999999888 2337788999999999998765
No 162
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.76 E-value=0.0046 Score=47.23 Aligned_cols=179 Identities=14% Similarity=0.112 Sum_probs=84.3
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 120 (271)
|..-...+ .|++++|.+.|+.+.... .+-.....-.++.++.+.|+++.|...+++..+....-...-+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 66666677 888888888888887652 222344555677777788888888888887776522111111222222221
Q ss_pred ccCCHhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036275 121 RLGQFEKMEEVLTAMEKGSY---AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 197 (271)
......... ...... ..-...+..++.-|=.+....+|...+..+... =...--.+.+-|.+.|.+..
T Consensus 89 ~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 89 YYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHH
T ss_pred HHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHH
Confidence 111111110 000000 001223344444444455555555555444432 01111223455666667777
Q ss_pred HHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHH
Q 036275 198 CLEIFEEMIDAGCYPDG----GTAKVLISACSSEDQIEQV 233 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a 233 (271)
|..-++.+++. -|+. .....++.++.+.|..+.+
T Consensus 160 A~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 160 AIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 76666666653 2222 3345556666666665533
No 163
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.76 E-value=0.024 Score=49.62 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=128.4
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CC
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-----------KP 107 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~~ 107 (271)
|-.+...| .|+++.|..+|++..+...+-- ..+|......=.++.+++.|+++.++....-- ++
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 77777888 9999999999999887654432 45565556666677888889888877653211 11
Q ss_pred ------CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH-H
Q 036275 108 ------DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV-V 180 (271)
Q Consensus 108 ------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~ 180 (271)
+...|...++.--..|-++....+++.+.+..+. ++...-.....+-...-++++.+++++=...=-.|+. .
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 2344556666666778888888899988876542 3333333444455666788888888875443223443 3
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHhc
Q 036275 181 TWTSRLAAYSR---KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA--CSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 181 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~ 243 (271)
.|+..+.-+.+ ...++.|..+|++.++ |++|...-+..|+-+ -...|....|..++++....
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 55555544432 3467889999999888 677665433333322 23457788888888886543
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.73 E-value=0.0042 Score=54.27 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=84.8
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC--------CHhHHHHHHHH
Q 036275 69 GITPTMKSHMLLLTAYSKT-----GNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLG--------QFEKMEEVLTA 134 (271)
Q Consensus 69 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g--------~~~~a~~~~~~ 134 (271)
..+.+...|...+.+.... +..+.|..+|++..+. .|+- ..|..+..++.... +...+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4466778888877775543 2266788888888876 4443 33443333332211 12223333333
Q ss_pred HHhC-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036275 135 MEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213 (271)
Q Consensus 135 m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 213 (271)
.... ..+.+...|.++.-.....|++++|...+++.... .|+...|..+...+...|+.++|...+++.... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 2221 12334566666666666677888888888877766 356777777777778888888888877776654 344
Q ss_pred HHHH
Q 036275 214 GGTA 217 (271)
Q Consensus 214 ~~~~ 217 (271)
..||
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 4443
No 165
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00022 Score=43.90 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=27.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 103 (271)
.|++++|++.|+.+.+.. |-+...+..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455555555555555543 335555555555555555555555555555554
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0072 Score=52.87 Aligned_cols=141 Identities=10% Similarity=-0.046 Sum_probs=101.9
Q ss_pred CCCCCHHHHHHHHHHHHccC-----CHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcC--------CCHHHHHHHHHh
Q 036275 104 GLKPDTFVINSMLNLYGRLG-----QFEKMEEVLTAMEKGSYAAD-ISTYNILINIYGRG--------GFIEKMEGLFQS 169 (271)
Q Consensus 104 ~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~--------g~~~~a~~~~~~ 169 (271)
+.+.+...|...+++..... +.+.|..+|++..+. .|+ ...|..+..++... +++..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44567788999888855432 367899999999987 454 55665554444322 123344555554
Q ss_pred chhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 170 LPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 170 m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
.... ....++..|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++...-++...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3332 123455778888777778899999999999999875 7888999999999999999999999999887665544
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.66 E-value=0.041 Score=49.86 Aligned_cols=211 Identities=10% Similarity=0.094 Sum_probs=135.9
Q ss_pred HHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 47 FVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAY--SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 47 ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
+-... .+++..|++....+.+.. |+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-..|...+
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh
Confidence 34455 889999999999987763 343 344555554 4789999999998888877655 8899999999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC---------
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL--------- 194 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------- 194 (271)
+.++|..+|++..+. .|+......+..+|.|-+++.+..++--++.+. .+-++..+-.++....+...
T Consensus 92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 999999999999886 577777788888999999887655544444332 12234444445544433211
Q ss_pred -HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH-HHHhcccchhH----HHHHHHhhccccccc
Q 036275 195 -YRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIEQVTTLVR-TMHKDMKTALP----IYFNLYGEKGVARSN 264 (271)
Q Consensus 195 -~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~----~~~~~~~~~G~~~~a 264 (271)
..-|.+.++.+.+.+ -.-+..-...-...+...|++++|.+++. ...+....... .-++.+.+.+++++-
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 124556666666543 11122222222334567788999999984 34333222222 234455555555443
No 168
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.013 Score=49.90 Aligned_cols=210 Identities=10% Similarity=0.009 Sum_probs=137.8
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH----
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN---- 117 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~---- 117 (271)
+..+..+. ..+++.|++-++...+.. -+..-++....+|...|...++...-.+..+.|.+ ...-|+.|-.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 44444444 888899999988887775 46666677778888888888888777777666543 2233333333
Q ss_pred ---HHHccCCHhHHHHHHHHHHhCCCCCChhh-------------------------HHHHHHHHHcCCCHHHHHHHHHh
Q 036275 118 ---LYGRLGQFEKMEEVLTAMEKGSYAADIST-------------------------YNILINIYGRGGFIEKMEGLFQS 169 (271)
Q Consensus 118 ---~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~ 169 (271)
+|.+.++.+.++..|.+....-..|+... ...-...+.+.|++..|.+.+.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 45556778888888877654322222211 11124556778888888888888
Q ss_pred chhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH
Q 036275 170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249 (271)
Q Consensus 170 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 249 (271)
+.... +-|...|....-+|.+.|.+..|.+=.+...+.. ++....|..=..++....++++|.+.|.+..+.++. ..
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~-~~ 460 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS-NA 460 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hH
Confidence 87764 3356788888888888888888888777777663 334455555555566667888888888887776633 33
Q ss_pred HHHHHHhhcc
Q 036275 250 IYFNLYGEKG 259 (271)
Q Consensus 250 ~~~~~~~~~G 259 (271)
.+++.|.++.
T Consensus 461 e~~~~~~rc~ 470 (539)
T KOG0548|consen 461 EAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 169
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.007 Score=54.30 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=72.8
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|.+++|+.+|++-++.+ .|=..|-..|.|++|+++-+.-....+. .||.....-+-..++.+.|+++
T Consensus 813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHH
Confidence 667777777776665432 3334445566667666665433332222 2333333334444445555444
Q ss_pred HHHH-----------HhC--------CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----------C--------
Q 036275 132 LTAM-----------EKG--------SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK----------R-------- 174 (271)
Q Consensus 132 ~~~m-----------~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g-------- 174 (271)
|+.. .+. .-..|...|..-....-..|+.+.|+.++...+.. |
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence 4432 110 00123344444444455566666666666544321 0
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 175 --LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 175 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
-.-|......|.+.|-..|++.+|..+|.+.+
T Consensus 961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 01255566677777777777777777766543
No 170
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.018 Score=44.96 Aligned_cols=139 Identities=9% Similarity=0.052 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH-----H
Q 036275 77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL-----I 151 (271)
Q Consensus 77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-----i 151 (271)
.+.++.+..-.|.+.-.+..+++.++...+.++.....|++.-.+.||.+.|..+|++..+..-..|..+++.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34566666677888888888999888877778888889999999999999999999977765334444444443 3
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 218 (271)
..|.-++++..|...+.++.... .-|.+..|.-.-...-.|+...|.+.++.|++. .|...+-.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 45667788888888888877653 224555555555556678889999999998876 45444433
No 171
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.0057 Score=54.83 Aligned_cols=199 Identities=12% Similarity=0.088 Sum_probs=137.5
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHHHHcc
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-G--------LKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~~~~~li~~~~~~ 122 (271)
.|+.+.|.+-.+.++. ...|..+.+.|.+.++++-|.-.+..|... | -.++ .+=....-.....
T Consensus 741 iG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 8999999888776653 368999999999999998887777666532 1 1222 2222333445688
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 202 (271)
|.+++|..+|.+-++ |..|=..|...|.+++|.++-+.=-... -..||.....-+-..+|.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 999999999988766 3456667888999999999877433221 2347777777777778887777665
Q ss_pred HH-----------HHHC--------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc----------c--------
Q 036275 203 EE-----------MIDA--------GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM----------K-------- 245 (271)
Q Consensus 203 ~~-----------m~~~--------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~-------- 245 (271)
++ +.+. .-..|...|..........|+.|.|+.++...+.-. .
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH
Confidence 43 2221 012456677778888888999999999888775421 1
Q ss_pred ------chhHHHHHHHhhccccccchhhhh
Q 036275 246 ------TALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 246 ------~~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
...-.+...|...|++.+|+.-|+
T Consensus 962 ~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 962 EESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 112335667888888888887664
No 172
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.019 Score=44.81 Aligned_cols=159 Identities=12% Similarity=0.048 Sum_probs=114.3
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH----
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL---- 186 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li---- 186 (271)
..+.++......|.+.-....+.+..+..-+.++.....|.+.-...|+.+.|...|++..+..-+.|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4567788888888999999999999987656788889999999999999999999999887654445555555544
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH---HH------HH-HH
Q 036275 187 -AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP---IY------FN-LY 255 (271)
Q Consensus 187 -~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~------~~-~~ 255 (271)
..|..++++.+|...+.+..... .-|....+.=.-+..-.|+...|.+.++.|.+..+.+.. .+ .+ .|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Y 337 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEY 337 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHh
Confidence 34567889999999999887754 234444343333344568999999999999887655421 12 22 26
Q ss_pred hhccccccchhhhhc
Q 036275 256 GEKGVARSNLGQYIG 270 (271)
Q Consensus 256 ~~~G~~~~a~~~~~~ 270 (271)
..+-+.+.++..+|.
T Consensus 338 s~~~~~k~~l~~~ia 352 (366)
T KOG2796|consen 338 SRSMQKKQALLEAVA 352 (366)
T ss_pred hhhhhHHHHHHHHHh
Confidence 666666666666553
No 173
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0057 Score=56.00 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=74.4
Q ss_pred chHHHHHH---hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275 44 PNLFVFIF---SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120 (271)
Q Consensus 44 y~~ll~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 120 (271)
+...+..+ .+..++|.+.-++.. .+..|+.+..+-.+.|.+.+|++-|-+. -|+..|..+++.+.
T Consensus 1077 n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1077 NVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVAS 1144 (1666)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHH
Confidence 44555555 677777776554332 4467888888888888777777665332 25566777888888
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 036275 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF 167 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 167 (271)
+.|.+++-.+++....+....|.+. +.||-+|++.+++.+.++++
T Consensus 1145 ~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred hcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 8888888888777776665555555 46777788877777766654
No 174
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0054 Score=52.09 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH-----
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL----- 150 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l----- 150 (271)
-...+.++..+..+++.|++-+....+.. -+..-++..-.+|...|...++...-+...+.|. .....|+.+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHH
Confidence 35578888889999999999999988875 3566677788889999999888888777776653 222333333
Q ss_pred --HHHHHcCCCHHHHHHHHHhchhCCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHH
Q 036275 151 --INIYGRGGFIEKMEGLFQSLPAKRLKPDVVT-------------------------WTSRLAAYSRKKLYRRCLEIFE 203 (271)
Q Consensus 151 --i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~ 203 (271)
..+|.+.++++.+...|.+....-..|+..+ ...-...+.+.|++..|.+.|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3456667888999999988765544443322 1111334567899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhhh
Q 036275 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 204 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+++... +-|...|..-.-+|.+.|.+..|..=.+...+.+ +..+.+|.+.|....+.+.|
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~----p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD----PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHH
Confidence 999875 5567889999999999999999988777766653 44556666666555555544
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0015 Score=51.59 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=63.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 036275 83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162 (271)
Q Consensus 83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 162 (271)
-..+.+++++|+..|.+.++.. +-|.+-|..-..+|.+.|..+.|++=.+...... +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3556667777777777777653 2255556666677777777777766666665542 2235667777777777777777
Q ss_pred HHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 163 MEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 163 a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
|.+.|++..+. .|+-.+|-.=+.
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHH
Confidence 77777766554 556555544333
No 176
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.50 E-value=0.065 Score=47.83 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=99.1
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhc
Q 036275 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRK 192 (271)
Q Consensus 114 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 192 (271)
.....+.+.++.++|...+.+..+. .+..+..|......+...|.+++|.+.|...... .|+ +.....+...+.+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHh
Confidence 3444555566666666666666554 2456777788888888899999999999988765 454 56788999999999
Q ss_pred CCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 193 KLYRRCLE--IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 193 g~~~~a~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
|+...|.. ++..+++.+ +.+...|-.+...+.+.|+.+.|.+.|.-..+
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99888888 999999886 66788999999999999999999999997643
No 177
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.029 Score=48.53 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=125.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275 47 FVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT--GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124 (271)
Q Consensus 47 ll~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 124 (271)
++..|.+.-+.+.++-...... .|. ..+.+++..+.+. .....+.+++...-+....-+...--.++......|+
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 3333366666666655444321 222 3344455444332 2467777787777766433334556667778889999
Q ss_pred HhHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC--CCCCCH----HHHHHHHHHHH
Q 036275 125 FEKMEEVLT--------AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK--RLKPDV----VTWTSRLAAYS 190 (271)
Q Consensus 125 ~~~a~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~----~~~~~li~~~~ 190 (271)
++.|.+++. .+.+.+..| .+..++...+.+.++.+.|..++.+.... .-.+.. .++..+..--.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 999999999 666665544 44467788888888888888887776431 001122 23444444445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
+.|+.++|..+++++.+.+ ++|..+...++.+|++. |.+.|..+-+.+.
T Consensus 470 r~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred hcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 7899999999999999864 78999999999999885 7888888877664
No 178
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.023 Score=52.23 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=83.3
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.+-+++|..+|++.- .+....+.|+.- -+.++.|.++-++.. .+..|..+..+-.+.|...+|++-
T Consensus 1061 ~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHH
Confidence 667788888777542 244455555543 355666666655433 445677888888888887777765
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
|-+. .|+..|...++...+.|.+++-.+.+...+++...|.. =+.||-+|++.++..+..++
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHH
Confidence 5322 36677788888888888888888888777776555543 35677777777766655443
No 179
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.49 E-value=0.0041 Score=44.71 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 036275 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-----DAGCYPDGGT 216 (271)
Q Consensus 147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 216 (271)
...++..+...|++++|.++.+.+.... +.+...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555555555555555555555432 2244555555555555555555555555442 2355555544
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.49 E-value=0.0056 Score=55.84 Aligned_cols=82 Identities=11% Similarity=0.076 Sum_probs=38.5
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH--HHhcCCHHH
Q 036275 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA--YSRKKLYRR 197 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~ 197 (271)
.+.++..++..-|+...+.. |.|...|..+..+|.++|++..|.++|.+.... +|+ .+|...-.+ -+..|.+++
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHH
Confidence 34444444444444444332 334555556666666666666666666555443 232 223222222 234555555
Q ss_pred HHHHHHHH
Q 036275 198 CLEIFEEM 205 (271)
Q Consensus 198 a~~~~~~m 205 (271)
|...+...
T Consensus 649 ald~l~~i 656 (1238)
T KOG1127|consen 649 ALDALGLI 656 (1238)
T ss_pred HHHHHHHH
Confidence 55555443
No 181
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.48 E-value=0.028 Score=48.14 Aligned_cols=175 Identities=11% Similarity=0.123 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 036275 55 FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINSMLNLYGRLGQFEKMEEVL 132 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~ 132 (271)
.+.....++++...- +.|+ -+|...|+..-+..-+..|..+|.+..+.+..+ .+...+++|..+|. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 566667777776543 3444 468888999889888999999999999998877 66778888888765 5678899999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 036275 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV--VTWTSRLAAYSRKKLYRRCLEIFEEMIDA-G 209 (271)
Q Consensus 133 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~ 209 (271)
+--.+. +..++.--...++.+...++-..+..+|++....++.|+. ..|..+|.-=+.-|+...+.++-+++... .
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 876654 3344555578899999999999999999999988666654 68999999999999999999998887643 1
Q ss_pred --CCCCHHHHHHHHHHHhccCcHHH
Q 036275 210 --CYPDGGTAKVLISACSSEDQIEQ 232 (271)
Q Consensus 210 --~~p~~~~~~~l~~~~~~~g~~~~ 232 (271)
..+...+-..+++-|.-.+...-
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccc
Confidence 22333344455555555554443
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00064 Score=41.38 Aligned_cols=54 Identities=9% Similarity=0.074 Sum_probs=24.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
.+.+.|++++|...|+++.+... -+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555544444431 1333444444444445555555544444443
No 183
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.45 E-value=0.019 Score=41.18 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=82.8
Q ss_pred CHHHHHHHHHH---HHccCCHhHHHHHHHHHHhC--C-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH
Q 036275 108 DTFVINSMLNL---YGRLGQFEKMEEVLTAMEKG--S-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181 (271)
Q Consensus 108 ~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~--~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 181 (271)
|...|..++.. ....++.+.+...++++... | +-++... .........-++.+. ..+
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~ 64 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDA 64 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHH
Confidence 34445555332 34567777888777777653 2 1222221 222233333333332 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh-----cccchhHHHHHHHh
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-----DMKTALPIYFNLYG 256 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~ 256 (271)
...++..+...|++++|..+.+.+.... +.|...|..+++++...|+...|.++|+++.+ -|..|.+.+-.+|.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~ 143 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYR 143 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHH
Confidence 7778888899999999999999999864 66889999999999999999999999998853 36666666666554
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.008 Score=48.47 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh----CCCCCC-h
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPD-TFVINSMLNLYGRLGQFEKMEEVLTAMEK----GSYAAD-I 144 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~ 144 (271)
..|......|-..|++++|.+.|.+..+. +-... ...|......|.+. ++++|.+.+++..+ .|-+.. .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34555666677788888888888766432 21111 13355555555444 88888888887653 342222 4
Q ss_pred hhHHHHHHHHHcC-CCHHHHHHHHHhchh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----C
Q 036275 145 STYNILINIYGRG-GFIEKMEGLFQSLPA----KRLKPD--VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-----P 212 (271)
Q Consensus 145 ~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p 212 (271)
..+..+...|-.. |++++|.+.|++... .| .+. ..++..+...+.+.|++++|.++|++....-.. +
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 5677888888888 999999999998653 23 221 346777888899999999999999998764322 2
Q ss_pred CHH-HHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 213 DGG-TAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 213 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
+.. .+...+-++...||...|.+.+++.....
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 222 23333445667799999999999987654
No 185
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.43 E-value=0.0047 Score=43.07 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 188 (271)
..++.++|.++++.|+.+....+++..-.-.+...... +. .-....+.|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~-----------~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE-----------GD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc-----------Cc---------cCCCCCCCCCHHHHHHHHHH
Confidence 44566666666666666666666654432211110000 00 11233456777888888888
Q ss_pred HHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHh
Q 036275 189 YSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACS 225 (271)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~ 225 (271)
|+.+|++..|.++++...+ .+++.+..+|..|++-+.
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8888888888888877654 667777777777777643
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.014 Score=40.30 Aligned_cols=89 Identities=13% Similarity=0.018 Sum_probs=48.1
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC---H-HHHHHHHHHH
Q 036275 116 LNLYGRLGQFEKMEEVLTAMEKGSYAAD--ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD---V-VTWTSRLAAY 189 (271)
Q Consensus 116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~-~~~~~li~~~ 189 (271)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+|++.... .|+ . .....+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445556666666666666666654433 234445556666666666666666665543 122 1 1122222345
Q ss_pred HhcCCHHHHHHHHHHHH
Q 036275 190 SRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~ 206 (271)
...|+.++|.+.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666554433
No 187
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.42 E-value=0.015 Score=53.28 Aligned_cols=190 Identities=12% Similarity=0.073 Sum_probs=140.3
Q ss_pred HHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 036275 47 FVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF 125 (271)
Q Consensus 47 ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 125 (271)
.+..+ ..+...|...|-+..+.+ +.-...|..|...|....+...|.+-|++..+.. ..+......+.+.|++..++
T Consensus 465 ~a~~~~rK~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 465 VALGCMRKNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccH
Confidence 34444 666778888887777665 3346688999999998889999999999998774 33666788899999999999
Q ss_pred hHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275 126 EKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 126 ~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (271)
+.|..+.-..-+.. ...-..-|-...-.|.+.++..+|..-|+...... +-|...|..+..+|.+.|++..|.++|.+
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 99999843332221 11122233345556788999999999999887763 23677899999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHh
Q 036275 205 MIDAGCYPDGGTAKVLISA--CSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 205 m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 242 (271)
.... +|+. +|.....+ ....|.+.++...+..+..
T Consensus 622 As~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 622 ASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7765 4544 45444443 4567899999988887754
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.0049 Score=48.94 Aligned_cols=102 Identities=11% Similarity=-0.006 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG--CYPDGGTAK 218 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~ 218 (271)
..|...+..+.+.|++++|...|+.+... -|+ +..+..+..+|...|++++|...|+.+...- -+.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 44555555556667788887777777664 233 2466677777777888888888887777531 111233444
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 219 VLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 219 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
.+...+...|+.++|..+++++.+..+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 455566677888888888887777665443
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.0013 Score=40.00 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=25.8
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
..+...|++++|.+.|+++.+.. +-+...+..+..++...|++++|...|++.++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555554442 11334444444555555555555555555443
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.38 E-value=0.043 Score=43.15 Aligned_cols=188 Identities=8% Similarity=0.040 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCCHhHHHHHHHHHHhCCC-CCChhhHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI---NSMLNLYGRLGQFEKMEEVLTAMEKGSY-AADISTYN 148 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~ 148 (271)
+...+-.....+.+.|++++|.+.|+++....... .... -.+..++.+.+++++|...+++..+.-- .|+ ..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHH
Confidence 33334345555567788888888888887763322 2222 3456677788888888888888776521 122 2222
Q ss_pred HHHHHHHcCCCHHHHHHHHHhchhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPD-----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223 (271)
Q Consensus 149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 223 (271)
..+.+.+....-...+.-+.........++ ..++..+|+-|=...-..+|...+..+... .-.. --.+.+-
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~-e~~ia~~ 184 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKY-ELSVAEY 184 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHH-HHHHHHH
Confidence 333332210000000000000000000000 023344444444444455665555554432 1111 1245666
Q ss_pred HhccCcHHHHHHHHHHHHhcccchh------HHHHHHHhhccccccchh
Q 036275 224 CSSEDQIEQVTTLVRTMHKDMKTAL------PIYFNLYGEKGVARSNLG 266 (271)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~G~~~~a~~ 266 (271)
|.+.|.+..|..-++.+.++.+.+. ..+.++|.+.|..++|..
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 8889999999999999998776543 335688999999888765
No 191
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0042 Score=49.08 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=64.1
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 036275 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRR 197 (271)
Q Consensus 119 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 197 (271)
..+.+++.+|...|.+.++.. +.|.+-|..-..+|++.|.++.|++=.+..... .|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 446677777777777776652 455666667777777777777777666665554 222 3567777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275 198 CLEIFEEMIDAGCYPDGGTAKVLISA 223 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~~~~~~l~~~ 223 (271)
|.+.|++.++. .|+-.+|..=++.
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 77777666553 5665565554444
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=97.36 E-value=0.0031 Score=45.59 Aligned_cols=92 Identities=8% Similarity=-0.100 Sum_probs=55.0
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
|..--..| .|++++|..+|.-+...+ +-+..-|..|..++-..+++++|+..|......+.. |+..+--...++...
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 55555555 777777777777666554 335555566666666667777777776655444321 333333455566666
Q ss_pred CCHhHHHHHHHHHHh
Q 036275 123 GQFEKMEEVLTAMEK 137 (271)
Q Consensus 123 g~~~~a~~~~~~m~~ 137 (271)
|+.+.|...|+...+
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777776666655
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.33 E-value=0.0019 Score=39.75 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHH
Q 036275 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED-QIEQVTTLVRTMH 241 (271)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 241 (271)
.+|..+...+...|++++|...|++..+.. +-+...+..+..++...| ++++|.+.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444445555555555555444432 223334444444444444 4455555444443
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.32 E-value=0.0063 Score=48.34 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCC--CCCCHHHH
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD----ISTYNILINIYGRGGFIEKMEGLFQSLPAKR--LKPDVVTW 182 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~ 182 (271)
...|...+....+.|++++|...|+.+.+. .|+ ...+-.+...|...|++++|...|+.+...- -......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345777777667789999999999999886 233 3577789999999999999999999998641 11124566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 036275 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215 (271)
Q Consensus 183 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 215 (271)
-.+...+...|+.++|.++|+.+.+. .|+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 66777888999999999999998876 45543
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.32 E-value=0.04 Score=42.09 Aligned_cols=178 Identities=6% Similarity=0.022 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh--hhHHHHH
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI--STYNILI 151 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li 151 (271)
.+-.....+...|++++|...|+++..... +......-.++.++.+.|+++.|...+++..+. -|+. ..+...+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHH
Confidence 344555667788999999999999987622 222344556788899999999999999998765 2321 2222333
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKP---DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 228 (271)
.+.+..+...... ........ -...+..++.-|=.+.-..+|...+..+.+. . ...--.+.+.|.+.|
T Consensus 85 ~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcc
Confidence 3332211111111 00000000 1235666677777777777787777666542 1 112233567799999
Q ss_pred cHHHHHHHHHHHHhcccchh------HHHHHHHhhccccccc
Q 036275 229 QIEQVTTLVRTMHKDMKTAL------PIYFNLYGEKGVARSN 264 (271)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~G~~~~a 264 (271)
.+..|..-++.+.+..+.+. ..+..+|.+.|..+.+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 99999999999998876654 3367778888887744
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.31 E-value=0.0011 Score=40.79 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=7.8
Q ss_pred HHHHHHccCCHhHHHHHHHHH
Q 036275 115 MLNLYGRLGQFEKMEEVLTAM 135 (271)
Q Consensus 115 li~~~~~~g~~~~a~~~~~~m 135 (271)
+...+...|++++|+..|++.
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~a 29 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKA 29 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.018 Score=45.68 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC---CHHHHHHHHHhchhCCCCCCHHHH
Q 036275 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG---FIEKMEGLFQSLPAKRLKPDVVTW 182 (271)
Q Consensus 106 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~ 182 (271)
+-|...|-.|...|...|+.+.|..-|....+.- +++...+..+..++..+. ...++.++|+++.... .-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4477788888888888888888888888887752 456666666666655433 3567888888888763 2245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222 (271)
Q Consensus 183 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 222 (271)
..|...+...|++.+|...|+.|.+.. +|+. ....+|+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~~-~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL-PADD-PRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-CCCC-chHHHHH
Confidence 667778888888888888888888763 3333 3344443
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.23 E-value=0.047 Score=40.41 Aligned_cols=155 Identities=13% Similarity=0.091 Sum_probs=88.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 036275 79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158 (271)
Q Consensus 79 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 158 (271)
.+..+..+.=+.+....-..+-. ..-|+...--.|..+....|+..+|...|++....-+.-|....-.+.++....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 33444444444444333222222 2256666666677777777777777777777666544456666666777777777
Q ss_pred CHHHHHHHHHhchhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036275 159 FIEKMEGLFQSLPAKR---LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235 (271)
Q Consensus 159 ~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 235 (271)
++..|...++.+-+.. -.|| +.-.+.+++...|.++.|...|+..... .|+...-......+.++|..+++..
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 7777777777665432 2233 4445566677777777777777776664 4444443333444555565555444
Q ss_pred HHHH
Q 036275 236 LVRT 239 (271)
Q Consensus 236 ~~~~ 239 (271)
-+..
T Consensus 215 q~~~ 218 (251)
T COG4700 215 QYVA 218 (251)
T ss_pred HHHH
Confidence 3333
No 199
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.23 E-value=0.05 Score=47.18 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=107.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHc----cCCHhHHHHHHHHHHhCCCCCChhhHH-
Q 036275 80 LLTAYSKTGNVAKCEGVINQMHKSG-LKPD-----TFVINSMLNLYGR----LGQFEKMEEVLTAMEKGSYAADISTYN- 148 (271)
Q Consensus 80 li~~~~~~~~~~~a~~~~~~m~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~- 148 (271)
+++...-.|+-+.+++.+.+-.+.+ +.-. .-+|+.++..++. ..+.+.|.++++.+.+. -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 3333445688888888887766543 2211 1335555555444 45678899999999887 46655443
Q ss_pred HHHHHHHcCCCHHHHHHHHHhchhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 036275 149 ILINIYGRGGFIEKMEGLFQSLPAKR---LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC- 224 (271)
Q Consensus 149 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~- 224 (271)
.-.+.+...|++++|.+.|++..... .+.....+--+.-.+.-.+++++|...|..+.+.. .-+..+|..+..+|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 44567788999999999999755311 11233455666677888999999999999999864 44566677666654
Q ss_pred hccCcH-------HHHHHHHHHHH
Q 036275 225 SSEDQI-------EQVTTLVRTMH 241 (271)
Q Consensus 225 ~~~g~~-------~~a~~~~~~~~ 241 (271)
...|+. ++|.++|.+..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 457777 88888888874
No 200
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.18 E-value=0.01 Score=41.39 Aligned_cols=97 Identities=10% Similarity=0.076 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
|..++..+|.++++.|+++....+.+..-..++...... +. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~-----------~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE-----------GD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc-----------Cc---------cCCCCCCCCCHHHHHHHHH
Confidence 457888999999999999999888876543221110000 00 1222334566666666666
Q ss_pred HHHcCCCHHHHHHHHHhchh-CCCCCCHHHHHHHHHHH
Q 036275 153 IYGRGGFIEKMEGLFQSLPA-KRLKPDVVTWTSRLAAY 189 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~ 189 (271)
+|+.+|++..|.++++...+ -+++.+..+|..|++-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66666666666666665442 34555566666666543
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.027 Score=44.70 Aligned_cols=105 Identities=7% Similarity=0.021 Sum_probs=85.6
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHH
Q 036275 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK---KLYRRCLEIFEEMIDAGCYPDGGTA 217 (271)
Q Consensus 141 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~ 217 (271)
+-|...|-.|..+|...|+.+.|...|....+.. .+++..+..+..++... .+..++..+|++++... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 6689999999999999999999999999987752 34666777777665543 34568999999999875 4567777
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275 218 KVLISACSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 218 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
..|...+...|++.+|...|+.|.+..++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 778888999999999999999999877654
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.17 E-value=0.056 Score=40.06 Aligned_cols=134 Identities=11% Similarity=0.088 Sum_probs=96.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC-CCChhhHH
Q 036275 70 ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY-AADISTYN 148 (271)
Q Consensus 70 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~ 148 (271)
+.|+...--.|..+..+.|+..+|...|++...--+--|....-.+.++....+++..|...++.+.+..- ..++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 46788877888888999999999999998887655566777777888888888999999999888877531 01344556
Q ss_pred HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 205 (271)
.+.+.+...|...+|+..|+..... -|+...-......+...|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 6778888899999999999888775 455544333344455566666555444443
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.0099 Score=52.36 Aligned_cols=186 Identities=13% Similarity=0.165 Sum_probs=116.1
Q ss_pred HHHHhcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccC
Q 036275 48 VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD----TFVINSMLNLYGRLG 123 (271)
Q Consensus 48 l~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g 123 (271)
+.+|-|++++|+++|-++-+++ ..|..+.+.|+|-.+.++++. -|...| ...|+.+...++...
T Consensus 743 i~~~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~ 810 (1189)
T KOG2041|consen 743 ISAFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMM 810 (1189)
T ss_pred HhhhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4555788888888888776654 345566677777766655432 221212 356788888888888
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 203 (271)
.|++|.+++..-... ...+.++.+..++++-+.+...+.+ +......+..++...|.-++|.+.+-
T Consensus 811 ~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 811 EWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 888888877654221 3466777777777777776666654 44566777788888888888777664
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch--------------hHHHHHHHhhccccccchhhh
Q 036275 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA--------------LPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 204 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+. + .| ...+.+|...+++.+|.++-++..-..... ...-+..+.++|+.-+|.+.+
T Consensus 877 r~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll 946 (1189)
T KOG2041|consen 877 RR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLL 946 (1189)
T ss_pred hc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHH
Confidence 32 2 12 223556777778888777766543221111 111245577777777666543
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.14 E-value=0.0034 Score=39.05 Aligned_cols=51 Identities=14% Similarity=-0.039 Sum_probs=19.7
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
.+.+++++|.++++.+.... |.++..+.....++.+.|++++|.+.|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444444443331 2233333333344444444444444444333
No 205
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.04 E-value=0.059 Score=44.15 Aligned_cols=109 Identities=9% Similarity=0.078 Sum_probs=81.9
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 190 (271)
+.+..|.-+...|+...|.++-.+. + .|+..-|...+.+++..++|++-.++... + -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 4555677778889988888775555 3 37888899999999999999988887543 1 25678999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
..|+..+|..++.. +. + ..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988877 22 2 3345566777888777765444
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.026 Score=44.28 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=74.6
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPDTFVINSMLNL 118 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~ 118 (271)
|+.-+..| .|++..|...|....+.. -+-....+.-|..++...|++++|..+|..+.+.-. +--+..+--|...
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 99999999 999999999999988763 122344455589999999999999999988877521 1223666677888
Q ss_pred HHccCCHhHHHHHHHHHHhC
Q 036275 119 YGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 119 ~~~~g~~~~a~~~~~~m~~~ 138 (271)
..+.|+.++|..+|+++.+.
T Consensus 225 ~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 88999999999999998886
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.97 E-value=0.0075 Score=37.46 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=27.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
.|.+.+++++|.++++++...+.. +...+.....++.+.|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555554322 3344444555555555555555555555543
No 208
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.93 E-value=0.026 Score=44.49 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH-HHHHHHHHhch
Q 036275 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI-EKMEGLFQSLP 171 (271)
Q Consensus 126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 171 (271)
+-+++++++|...|+-||..+-..|+++|.+.+.. .+..++.-.|.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 34667777777777777777777777777776652 33444444443
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.90 E-value=0.13 Score=44.67 Aligned_cols=169 Identities=14% Similarity=0.038 Sum_probs=116.9
Q ss_pred HHHHHhhcCchHHHHHH--hcCHHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 036275 35 INFLLLQHTPNLFVFIF--SIYFSDAHAVFEEMKRLG-ITPT-----MKSHMLLLTAYSK----TGNVAKCEGVINQMHK 102 (271)
Q Consensus 35 ~~f~~~~~~y~~ll~~~--~g~~~~A~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 102 (271)
-++..+|.....++... .|+-+..++.+.+..+.+ +.-. .-.|+..+..++. ....+.|.++++.+.+
T Consensus 182 L~lSlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~ 261 (468)
T PF10300_consen 182 LVLSLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK 261 (468)
T ss_pred HHHHhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH
Confidence 34667777788888888 999999999999876643 2211 1234444444433 4567889999999998
Q ss_pred CCCCCCHHHHHHH-HHHHHccCCHhHHHHHHHHHHhC--CC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC
Q 036275 103 SGLKPDTFVINSM-LNLYGRLGQFEKMEEVLTAMEKG--SY-AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178 (271)
Q Consensus 103 ~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~--~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 178 (271)
+ .|+...|... .+.+...|++++|++.|+..... .. ......+--+.-.+...+++++|.+.|..+.+.. .-+
T Consensus 262 ~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WS 338 (468)
T PF10300_consen 262 R--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWS 338 (468)
T ss_pred h--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccH
Confidence 7 6777666443 56677889999999999976542 11 1234445566777889999999999999999763 223
Q ss_pred HHHHHHHHHHH-HhcCCH-------HHHHHHHHHHH
Q 036275 179 VVTWTSRLAAY-SRKKLY-------RRCLEIFEEMI 206 (271)
Q Consensus 179 ~~~~~~li~~~-~~~g~~-------~~a~~~~~~m~ 206 (271)
..+|.-+..+| ...|+. ++|.++|++.-
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44555444433 356777 78888887653
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.89 E-value=0.01 Score=49.93 Aligned_cols=65 Identities=5% Similarity=-0.168 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI----STYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 107 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567788888888888888888888887775 3442 34778888888888888888888887764
No 211
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.84 E-value=0.052 Score=46.54 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=103.2
Q ss_pred hcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275 52 SIYFSDAHAVFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 130 (271)
.++++.+.++...-.- ..+| ..-.+.++..+-+.|..+.|+++-. |+.+ -.+...+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHHHH
Confidence 8888887777752111 1222 4557888888889999999888743 3322 3566778999999987
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036275 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 210 (271)
+.++. .+...|..|.+...++|+++-|++.|++... |..|+-.|.-.|+.+...++.+.....|
T Consensus 340 ~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 340 IAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 65333 4677999999999999999999999998763 7778888888899888888887777665
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275 211 YPDGGTAKVLISACSSEDQIEQVTTLVRTM 240 (271)
Q Consensus 211 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 240 (271)
. ++..+.++...|+.++..+++.+-
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 445555566668888888777654
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.80 E-value=0.17 Score=39.51 Aligned_cols=178 Identities=12% Similarity=0.137 Sum_probs=94.3
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVINSMLNLY 119 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~ 119 (271)
|+..+.-+ .|++++|.+.|+.+..+. .+-...+--.++-++.+.++.+.|+...++...... .||. -|-.-|.+.
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgL 116 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGL 116 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHH
Confidence 77777777 888888888888887652 233455566677777788888888888877776532 3332 233344444
Q ss_pred Hcc-------CCHhHHHHH---HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH-H-HHHHH
Q 036275 120 GRL-------GQFEKMEEV---LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT-W-TSRLA 187 (271)
Q Consensus 120 ~~~-------g~~~~a~~~---~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~-~~li~ 187 (271)
+.- .|...+..- |++...+ + |+ +.-...|..-+..+. |... + ..+.+
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~r-y-Pn-------------S~Ya~dA~~~i~~~~------d~LA~~Em~Iar 175 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQR-Y-PN-------------SRYAPDAKARIVKLN------DALAGHEMAIAR 175 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHH-C-CC-------------CcchhhHHHHHHHHH------HHHHHHHHHHHH
Confidence 321 122222222 2222222 1 11 111111111111111 0001 1 12234
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAGCYPD---GGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
-|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|...|-.++|...-.-+..+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 567777777777777777765 1211 2345556666777777777777655554443
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.77 E-value=0.0053 Score=38.77 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHccCCHhHHHHHHHHH
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKS----GL-KPD-TFVINSMLNLYGRLGQFEKMEEVLTAM 135 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 135 (271)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555555555555544422 11 111 233455555555555555555555543
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.75 E-value=0.091 Score=44.29 Aligned_cols=145 Identities=10% Similarity=0.106 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 153 (271)
.+|...|+...+..-++.|..+|-+..+.| +.+++..++++|..++ .|+..-|..+|+--... ++.+..--+-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 445566666666666777777777777776 4566666777777654 45566677777654443 22223333456666
Q ss_pred HHcCCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275 154 YGRGGFIEKMEGLFQSLPAKRLKPD--VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224 (271)
Q Consensus 154 ~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 224 (271)
+.+.++-+.|..+|+..... +.-+ ...|..+|.-=+.-|+...+..+=+.|.+. .|-..+...+..-|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 77777777777777744322 1112 346777777777777777777766666654 45554444444443
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.75 E-value=0.26 Score=40.93 Aligned_cols=222 Identities=14% Similarity=0.037 Sum_probs=144.3
Q ss_pred HHHHHHHhhcC--chHHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCC
Q 036275 33 MLINFLLLQHT--PNLFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAY--SKTGNVAKCEGVINQMHKSG 104 (271)
Q Consensus 33 ~~~~f~~~~~~--y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~ 104 (271)
+...|..-..+ |.+|-.++ .|+-..|.++-.+..+. +..|....-.++.+- .-.|+.+.|.+-|+.|...
T Consensus 72 ~~Ryfr~rKRdrgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d- 149 (531)
T COG3898 72 ARRYFRERKRDRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD- 149 (531)
T ss_pred HHHHHHHHHhhhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-
Confidence 34455555544 99988888 89999998887765432 233444454555443 3469999999999999863
Q ss_pred CCCCHH--HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC-CCCCHH-
Q 036275 105 LKPDTF--VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVV- 180 (271)
Q Consensus 105 ~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~- 180 (271)
|... -...|.-..-+.|+.+.|..+-+..-+.- +.-...+...+...+..|+++.|+++++.-+... +.++..
T Consensus 150 --PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae 226 (531)
T COG3898 150 --PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE 226 (531)
T ss_pred --hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH
Confidence 2222 23344444457899999999988877652 3346788999999999999999999999866532 334432
Q ss_pred -HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHH
Q 036275 181 -TWTSRLAAYS---RKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255 (271)
Q Consensus 181 -~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 255 (271)
.--.|+.+-. -.-+...|...-.+..+ +.||... -..-.+++.+.|+..++-.+++.+-+..+.+.....-.+
T Consensus 227 R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ 304 (531)
T COG3898 227 RSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR 304 (531)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH
Confidence 1222332211 12344455554444333 3555433 233456688899999999999999888877766665555
Q ss_pred hhcccc
Q 036275 256 GEKGVA 261 (271)
Q Consensus 256 ~~~G~~ 261 (271)
.+.|+.
T Consensus 305 ar~gdt 310 (531)
T COG3898 305 ARSGDT 310 (531)
T ss_pred hcCCCc
Confidence 666643
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.70 E-value=0.29 Score=40.81 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=120.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---c
Q 036275 52 SIYFSDAHAVFEEMKRLGITP---TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFVINSMLNLYGR---L 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~ 122 (271)
.|.-++..+.+.++.++=..| ++.+-..++-+|-...+++..+++.+.+.... +.-+...-....-++.+ .
T Consensus 116 ~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~ 195 (374)
T PF13281_consen 116 SGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKP 195 (374)
T ss_pred hhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccC
Confidence 333344455555565542122 33444456667888899999999999998762 11122222234445556 8
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---------CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGR---------GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
|+.++|.+++..+....-.+++.+|..+...|.. ....++|...+.+.-+. .||..+--.+...+...|
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAG 273 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcC
Confidence 9999999999996666667889999999887742 22367788888765544 344322112222222233
Q ss_pred C-HH---HHHHHH---HH-HHHCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 194 L-YR---RCLEIF---EE-MIDAGC---YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 194 ~-~~---~a~~~~---~~-m~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
. .+ +..++- .. ..+.|. ..|--.+.+++.++.-.|+.++|.+..++|.+..++.|
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2 21 222222 22 223332 34555677889999999999999999999998776665
No 217
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.3 Score=40.00 Aligned_cols=143 Identities=9% Similarity=0.151 Sum_probs=65.4
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|..++..+.+.. .++...+-.|.-++.-.|.+.+|..+-.+. +-++.--..++....+.++-++-..+
T Consensus 70 LgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred hccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 555555555555554433 344444444444444445555554443221 11222333444444555555555444
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA-AYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~ 207 (271)
.+.+... ...--.|.......-.+++|.+++.++... .|+-...|.-+. +|.+..-++-+.++++--++
T Consensus 144 h~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 144 HSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 4444332 111122333333333456666666666654 334444444443 33444555555555555443
No 218
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.61 E-value=0.023 Score=44.82 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=43.8
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC----------------CHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG----------------FIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
..+-....+..|.+-|+..|..+|+.|++.+=+.. +-+-+.+++++|.-.|+.||..+-..|+.
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 33444444455555555555555555555443322 12346777888888888888888888888
Q ss_pred HHHhcCCH
Q 036275 188 AYSRKKLY 195 (271)
Q Consensus 188 ~~~~~g~~ 195 (271)
++.+.+-.
T Consensus 167 ~FGr~~~p 174 (406)
T KOG3941|consen 167 AFGRWNFP 174 (406)
T ss_pred Hhcccccc
Confidence 88776654
No 219
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.55 E-value=0.32 Score=39.47 Aligned_cols=133 Identities=11% Similarity=0.254 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCH
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK--TG----NVAKCEGVINQMHKSGL---KPDTFVINSMLNLYGRLGQF 125 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~ 125 (271)
+++...+++.|.+.|..-+..+|-+....... .. ....|..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56677888999999988777666553333322 22 25678999999998753 3344555555544 44443
Q ss_pred ----hHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHcCCC--HHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275 126 ----EKMEEVLTAMEKGSYAADI--STYNILINIYGRGGF--IEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189 (271)
Q Consensus 126 ----~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 189 (271)
+.++.+|+.+.+.|+..+- ...+.++........ ...+.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 4567788888887876543 344444443333332 347888899999999998887776665433
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.51 E-value=0.1 Score=44.14 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT----FVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 557889999999999999999999999999887 4553 35899999999999999999999999885
No 221
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.49 E-value=0.29 Score=38.26 Aligned_cols=146 Identities=11% Similarity=0.110 Sum_probs=77.8
Q ss_pred HccCCHhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC-CCCCCHHHHHHHHHHHHh-----
Q 036275 120 GRLGQFEKMEEVLTAMEKGS--YAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTSRLAAYSR----- 191 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~----- 191 (271)
.+.|++++|.+.|+.+...- -+-...+.-.++-++.+.+++++|...+++.... +-.|| .-|-..|.+.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 35566666666666665431 1112344445555566666666666666664432 22222 223333333321
Q ss_pred --cCCHHH---HHHHHHHHHHC----CCCCCHHH------------HHHHHHHHhccCcHHHHHHHHHHHHhcccch---
Q 036275 192 --KKLYRR---CLEIFEEMIDA----GCYPDGGT------------AKVLISACSSEDQIEQVTTLVRTMHKDMKTA--- 247 (271)
Q Consensus 192 --~g~~~~---a~~~~~~m~~~----~~~p~~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--- 247 (271)
.+|... |..-|+++++. ...||... =..+.+.|.+.|.+-.|..-+++|.++....
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 222322 33333333332 11122211 1234566888999999999999998875443
Q ss_pred ---hHHHHHHHhhccccccchh
Q 036275 248 ---LPIYFNLYGEKGVARSNLG 266 (271)
Q Consensus 248 ---~~~~~~~~~~~G~~~~a~~ 266 (271)
...+.++|...|..++|-.
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHH
Confidence 3446778988998887753
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.45 E-value=0.19 Score=35.73 Aligned_cols=124 Identities=10% Similarity=0.136 Sum_probs=63.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 036275 79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG 158 (271)
Q Consensus 79 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 158 (271)
.++..+...+.......+++.+...+. .+...++.++..|++.+ ..+..+.+.. . .+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 455555555666666666666666552 45556666666666543 2333333331 1 12233344566666666
Q ss_pred CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036275 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK-KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225 (271)
Q Consensus 159 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 225 (271)
.++++.-++.++.. |...+..+... ++++.|.+.+.+ .-+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 66666666655432 22233333333 556666555544 113445555555443
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.43 E-value=0.057 Score=46.30 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=97.6
Q ss_pred HHHHHHhhcC-chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036275 34 LINFLLLQHT-PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF 110 (271)
Q Consensus 34 ~~~f~~~~~~-y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 110 (271)
..+++.+|++ .+.++..+ .|..+.|+++-.+-. .-.....+.|+++.|.++.++ ..+..
T Consensus 287 ~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~ 348 (443)
T PF04053_consen 287 SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPE 348 (443)
T ss_dssp HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHH
T ss_pred hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHH
Confidence 3455556655 44455544 899999988764332 234456688999999876544 34788
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 190 (271)
.|..|.+.+.+.|+++-|++.|.+... +..|+-.|.-.|+.++..++.+.....| -++....++.
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~ 413 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAAL 413 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHH
Confidence 999999999999999999999887644 5678888899999999999988887765 2677777777
Q ss_pred hcCCHHHHHHHHHH
Q 036275 191 RKKLYRRCLEIFEE 204 (271)
Q Consensus 191 ~~g~~~~a~~~~~~ 204 (271)
..|+.++..+++.+
T Consensus 414 ~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 414 LLGDVEECVDLLIE 427 (443)
T ss_dssp HHT-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 88988888877654
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.015 Score=36.71 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDA----GC-YPD-GGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
+|+.+...|...|++++|...+++..+. |- .|+ ..++..+..++...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555554421 10 111 2345555555666666666666665543
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.21 Score=40.61 Aligned_cols=151 Identities=10% Similarity=0.029 Sum_probs=102.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHhHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS---GLKPDTFVINSMLNLYGRLGQFEKM 128 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a 128 (271)
.|++.+|-..|+++.+. .|.|...++..=.+|.-.|+.+.-...++++... +++........+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 67777888888888765 3667778888888888888888888888777654 2332233334444455678888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK---RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (271)
++.-++..+.+ +.|...-.+....+-..|++.++.++..+-... +.-.-...|-...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888887764 556777778888888888888888887765432 1011112233333344566888888888875
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.28 E-value=0.12 Score=36.71 Aligned_cols=78 Identities=9% Similarity=-0.023 Sum_probs=56.2
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 120 (271)
|+.-..++ .|++++|.+.|+.+..+- .+-...+--.++.+|.+.+++++|...+++.++....-...-|...+.+++
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 77777888 999999999999987762 233456666788899999999999999999888754322233444455443
Q ss_pred c
Q 036275 121 R 121 (271)
Q Consensus 121 ~ 121 (271)
.
T Consensus 94 ~ 94 (142)
T PF13512_consen 94 Y 94 (142)
T ss_pred H
Confidence 3
No 227
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.24 E-value=0.3 Score=35.80 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=14.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHh
Q 036275 98 NQMHKSGLKPDTFVINSMLNLYGRLGQFE 126 (271)
Q Consensus 98 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 126 (271)
+.+.+.+++|+...+..+++.+.+.|++.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33444455555555555555555555443
No 228
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.37 Score=43.19 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=54.4
Q ss_pred HcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 036275 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 234 (271)
...|+..+|.++-.+.+ .||...|-.=+.+++..+++++.+++-+.+.. ..-|.-++.+|.+.|+.++|.
T Consensus 695 i~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 695 ILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHh
Confidence 33344444444444443 34555566666666666666655544433321 223555666677777777776
Q ss_pred HHHHHHHhcccchhHHHHHHHhhccccccchhh
Q 036275 235 TLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~ 267 (271)
+++.+.... +....+|...|.+.+|.+.
T Consensus 765 KYiprv~~l-----~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 765 KYIPRVGGL-----QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhhccCCh-----HHHHHHHHHhccHHHHHHH
Confidence 666554222 1566777777877777654
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.17 E-value=0.28 Score=34.82 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=88.8
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
...++..+ .+.+......++.+...+ +.+...++.++..|++.+ ....++.++. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 45677888 688999999999998887 478889999999999875 3444455442 1 233334558888999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 191 (271)
.+-++++.-++..+.. . ...+..+... ++.+.|.+++.+-. ++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence 9999999888877633 2 2233333334 88999999888632 66788888877654
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=96.15 E-value=0.2 Score=36.46 Aligned_cols=88 Identities=9% Similarity=-0.023 Sum_probs=54.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 036275 83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK 162 (271)
Q Consensus 83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 162 (271)
-+...|++++|..+|.-+...+.. +..-+..|..++-..+++++|+..|......+ .-|+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 344667777777777766665422 44445556666666677777777776655443 2344444456667777777777
Q ss_pred HHHHHHhchh
Q 036275 163 MEGLFQSLPA 172 (271)
Q Consensus 163 a~~~~~~m~~ 172 (271)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777776665
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.05 E-value=0.21 Score=42.18 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHH-HHHHH
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW-TSRLA 187 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~ 187 (271)
..|...|+.-.+..-++.|..+|-+..+.| +.+++..++++|..++. |+..-|.++|+.=... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345667777777777899999999999988 56788899999988775 7788899999864333 3455444 56666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAGCYPD--GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
-+..-++-+.|..+|+..+++ +.-+ ..+|..+|..-..-|++..+..+=+++.+..+.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 777889999999999976653 2333 568999999999999999888888887765443
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.03 E-value=0.34 Score=42.91 Aligned_cols=209 Identities=12% Similarity=0.060 Sum_probs=96.6
Q ss_pred chHHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHHH
Q 036275 44 PNLFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----PDTFVINSM 115 (271)
Q Consensus 44 y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~l 115 (271)
++..-.+| .-.+-+.+.-+++++++|-.|+... +...++-.|++.+|-++|.+--..+.. .|...| -.
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~ 676 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DY 676 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HH
Confidence 56666666 3334444555677777786677653 334455567777777766543211100 011111 11
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHh------chhCCCCC---CHHHHHHHH
Q 036275 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS------LPAKRLKP---DVVTWTSRL 186 (271)
Q Consensus 116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~g~~~---~~~~~~~li 186 (271)
..-+...|..++-..+...--+- ..++.-=.+....+...|+.++|..+.-+ +...+.+. +..+...+.
T Consensus 677 aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a 754 (1081)
T KOG1538|consen 677 AQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCA 754 (1081)
T ss_pred HHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHH
Confidence 22233334333332222211110 00110012333444555666665554321 11111111 233444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH-------------HHHH
Q 036275 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP-------------IYFN 253 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~~ 253 (271)
..+.+...+-.|.++|..|-+ ...+++.....+++++|..+-++..+--..++- .--.
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 444555566666677766542 234556666777777777777666543322211 1223
Q ss_pred HHhhccccccchhh
Q 036275 254 LYGEKGVARSNLGQ 267 (271)
Q Consensus 254 ~~~~~G~~~~a~~~ 267 (271)
+|-++|+.++|.+.
T Consensus 826 AfhkAGr~~EA~~v 839 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQV 839 (1081)
T ss_pred HHHHhcchHHHHHH
Confidence 46666666666543
No 233
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.01 E-value=0.4 Score=35.18 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=91.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 59 HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
.+..+-+.+.+++|+...|..+++.+.+.|++.. +.++...++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4556666778999999999999999999998654 4566677777776665554433332 223444444444443
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 139 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
-...+..+++.+...|++-+|.++.+..... +......++.+....+|...-..+++-..+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113567888899999999999999876432 2233466777877888877766666666554
No 234
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.89 E-value=0.75 Score=37.35 Aligned_cols=151 Identities=15% Similarity=0.225 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCC----HhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHcCCC-
Q 036275 90 VAKCEGVINQMHKSGLKPDTFVINSMLNLYGR--LGQ----FEKMEEVLTAMEKGSY---AADISTYNILINIYGRGGF- 159 (271)
Q Consensus 90 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~- 159 (271)
+++.+.+++.|.+.|+.-+..+|-+..-.... ..+ ...+..+++.|++.-. .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55678889999999998888777553333322 222 4568899999998622 1334455555444 3444
Q ss_pred ---HHHHHHHHHhchhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc---
Q 036275 160 ---IEKMEGLFQSLPAKRLKPDV--VTWTSRLAAYSRKKL--YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ--- 229 (271)
Q Consensus 160 ---~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--- 229 (271)
.+.++.+|+.+...|+..+. .....++........ ...+.++++.+.+.|+++....|..+.-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 35678888888887876653 333444433332222 44788889999999999888777765444333233
Q ss_pred -HHHHHHHHHHHHh
Q 036275 230 -IEQVTTLVRTMHK 242 (271)
Q Consensus 230 -~~~a~~~~~~~~~ 242 (271)
.+...++.+.+.+
T Consensus 236 ~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 236 IVEEIKEVIDELKE 249 (297)
T ss_pred HHHHHHHHHHHHhh
Confidence 3344444445443
No 235
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.80 E-value=0.31 Score=36.31 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
..+..+...|++.|+.+.|++.|.++.+....+.. ..+-.+|+.....+++..+...+.+....--.........-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667788888888888888888888777554443 3466777888888888888877776654311111111111111
Q ss_pred -----HHHcCCCHHHHHHHHHhch
Q 036275 153 -----IYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 153 -----~~~~~g~~~~a~~~~~~m~ 171 (271)
.+...+++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2234566777666666554
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.76 E-value=0.99 Score=37.75 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=104.0
Q ss_pred HHHHH--hcCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275 47 FVFIF--SIYFSDAHAVFEEMKRLG---ITPTMKSHMLLLTAYSK---TGNVAKCEGVINQMHKSGLKPDTFVINSMLNL 118 (271)
Q Consensus 47 ll~~~--~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 118 (271)
++-+| ..+++..+++.+.+...- +.-+...-....-++.+ .|+.++|++++..+......+++.+|..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 33356 899999999999997751 22233333344555666 89999999999997766668899999888887
Q ss_pred HHcc---------CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-HH---HHHHHH---Hh-chhCCC---CCC
Q 036275 119 YGRL---------GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IE---KMEGLF---QS-LPAKRL---KPD 178 (271)
Q Consensus 119 ~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~---~a~~~~---~~-m~~~g~---~~~ 178 (271)
|-.. ..+++|+..|.+.-+. .||...--.+...+...|. .+ +..++- .. +.++|. ..+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 7532 2366777777766554 2443322222222333332 22 222222 11 222332 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036275 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213 (271)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 213 (271)
--.+.+++.++.-.|+.++|.+..+.|.... +|.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~ 338 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPA 338 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccc
Confidence 4567888999999999999999999999763 443
No 237
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.70 E-value=1 Score=37.54 Aligned_cols=182 Identities=12% Similarity=0.017 Sum_probs=89.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----------------------
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPD---------------------- 108 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~---------------------- 108 (271)
.|..+.|...-.+..... +.-...+...+...+..|+|+.|+++.+.-++.. +.++
T Consensus 167 ~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 555555555555544332 3344556677777777777777777776544321 1111
Q ss_pred ----------------HHH-HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275 109 ----------------TFV-INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 109 ----------------~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
..- --.-.+++.+.|+..++-.+++.+-+. .|.+..+. +..+.+.|+. +..-+++..
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~--lY~~ar~gdt--a~dRlkRa~ 319 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIAL--LYVRARSGDT--ALDRLKRAK 319 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHH--HHHHhcCCCc--HHHHHHHHH
Confidence 111 111223344445555555555555444 23333222 1222333332 111111111
Q ss_pred h-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHHHh
Q 036275 172 A-KRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC-SSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 172 ~-~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~ 242 (271)
. ..++| +...--.+.++....|++..|..--+.... ..|....|..|.+.- ...||-.++.+.+-+..+
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1 01122 234445555566666666665554444333 257777787777764 345888888888777654
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.68 E-value=0.88 Score=36.64 Aligned_cols=194 Identities=12% Similarity=0.077 Sum_probs=112.6
Q ss_pred chHHHHHH-hc-CHHHHHHHHHHHHHc--------CCCCC-----HHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCC
Q 036275 44 PNLFVFIF-SI-YFSDAHAVFEEMKRL--------GITPT-----MKSHMLLLTAYSKTGNVA---KCEGVINQMHKSGL 105 (271)
Q Consensus 44 y~~ll~~~-~g-~~~~A~~~~~~~~~~--------~~~~~-----~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~ 105 (271)
||.-...+ .+ +++.|...+++..+. ...|+ ..++..++.+|...+..+ +|..+++.+.....
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~ 118 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG 118 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC
Confidence 88888888 88 999888887776443 12223 345566777887776644 56666666655532
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH---HcCCCHHHHHHHHHhchhCCCCCCHH-H
Q 036275 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY---GRGGFIEKMEGLFQSLPAKRLKPDVV-T 181 (271)
Q Consensus 106 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~-~ 181 (271)
. .+..+-.-++.+.+.++.+.+.+++.+|... +......+..++..+ ... ....+...++.+....+.|+.. .
T Consensus 119 ~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~ 195 (278)
T PF08631_consen 119 N-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQW 195 (278)
T ss_pred C-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHH
Confidence 2 2445556677777789999999999999886 232445555555555 333 3345666666665554555553 1
Q ss_pred HHHHHHH--H--HhcCC------HHHHHHHHHHHHH-CCCCCCHHHHHHH---H----HHHhccCcHHHHHHHHHHH
Q 036275 182 WTSRLAA--Y--SRKKL------YRRCLEIFEEMID-AGCYPDGGTAKVL---I----SACSSEDQIEQVTTLVRTM 240 (271)
Q Consensus 182 ~~~li~~--~--~~~g~------~~~a~~~~~~m~~-~~~~p~~~~~~~l---~----~~~~~~g~~~~a~~~~~~~ 240 (271)
...++-. + .+.++ .+.+..+++...+ .+.+.+..+-..+ + ..+.+.++++.|.++|+-.
T Consensus 196 ~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 196 LEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1111111 1 11111 4444455553332 3334444443322 2 2356778999999988753
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.31 Score=40.56 Aligned_cols=91 Identities=9% Similarity=-0.021 Sum_probs=45.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhh
Q 036275 81 LTAYSKTGNVAKCEGVINQMHKS-----GLKP---------DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST 146 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~m~~~-----~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 146 (271)
.+.+.+.|++..|..-|++.... +.++ -...+..|.-++.+.+++..|++.-+.....+ +.++-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34577788888888887775432 1111 11223444444445555555555544444443 334444
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275 147 YNILINIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 147 ~~~li~~~~~~g~~~~a~~~~~~m~~ 172 (271)
.---..++...|+++.|+..|+.+.+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44444455555555555555555444
No 240
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.59 Score=39.10 Aligned_cols=131 Identities=12% Similarity=0.056 Sum_probs=69.9
Q ss_pred HHHHHH-HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHH------
Q 036275 110 FVINSM-LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW------ 182 (271)
Q Consensus 110 ~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~------ 182 (271)
.++..+ ..++...|+.++|..+--..++.. ..+....-.-..++...++.+.+...|++....+ |+...-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhh
Confidence 444433 223445566677666655554432 1122222222233445566677777777665542 332211
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 183 -------TSRLAAYSRKKLYRRCLEIFEEMID---AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 183 -------~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
..-..-..+.|++..|.+.+.+.+. .++.|+...|.....+..+.|+..+|..-.++..+-
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 1112223456777777777777654 344556666666666677777777777766665543
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.34 Score=40.28 Aligned_cols=125 Identities=13% Similarity=0.033 Sum_probs=91.3
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhC-----CC---------CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275 115 MLNLYGRLGQFEKMEEVLTAMEKG-----SY---------AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180 (271)
Q Consensus 115 li~~~~~~g~~~~a~~~~~~m~~~-----~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 180 (271)
-.+.+.+.|++..|..-|++.... +. ..-..+++.|..+|.+.+++.+|++.-.+....+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 345677889999998888775432 11 1234457788889999999999999999988775 45778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccC-cHHHHHHHHHHHHh
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS-SED-QIEQVTTLVRTMHK 242 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g-~~~~a~~~~~~~~~ 242 (271)
....-.+++...|+++.|...|+++++. .|+......=+..|. +.. ..++..++|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888889999999999999999999986 566555554444443 333 33445778888754
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.58 E-value=0.28 Score=43.75 Aligned_cols=177 Identities=13% Similarity=0.156 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC--------HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 036275 71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPD--------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141 (271)
Q Consensus 71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 141 (271)
.|-+..|..+.......-.++.|+..|-+.... |++.- ...-.+=+.+ --|++++|++++-+|.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 477888988888888887888888777665543 33211 1111111222 347888888888777655
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220 (271)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 220 (271)
...|..+.+.|++-...++++.=-... -..-...|+.+...+.....|++|.+.+..... . ...
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~ 828 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQ 828 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhH
Confidence 345677778888877776665321110 001134677777777777778887777765321 1 223
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhhh
Q 036275 221 ISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 221 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+.++.+..++++.+.+.+.+.++ ....+.+.+++.+.|..++|++.|
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHH
Confidence 45555555555555555444433 333445555666666666665554
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.58 E-value=0.51 Score=33.50 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=26.5
Q ss_pred HccCCHhHHHHHHHHHHhCCCC---CChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 120 GRLGQFEKMEEVLTAMEKGSYA---ADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
.+.|++++|.+.|+.+..+ ++ -...+--.|+.+|.+.|++++|...+++..+.
T Consensus 21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455555555555555543 11 12233344555555555555555555555443
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.58 E-value=0.5 Score=33.05 Aligned_cols=137 Identities=11% Similarity=0.143 Sum_probs=74.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|.+++-.++..+...+. +..-||-+|--....-+-+-..++++.+-+. -|.. .+|++..+...
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi~C 78 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVIEC 78 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHHHH
Confidence 777888888887776643 4455555555554444444445554444321 1221 23333333333
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 210 (271)
+-.+ ..+....+..+++....|+-+.-.++..++.+. -.+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 79 ~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 79 YAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3221 123444566777777788888888888777642 356777777778888888888888888888777774
No 245
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.58 E-value=0.94 Score=36.21 Aligned_cols=135 Identities=10% Similarity=0.034 Sum_probs=81.0
Q ss_pred HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc-cC-CHhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 036275 92 KCEGVINQMHK-SGLKPDTFVINSMLNLYGR-LG-QFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLF 167 (271)
Q Consensus 92 ~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 167 (271)
+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+... |-.++..+...+|..+++.+++.+-.+++
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 34455542221 2344466666666666654 21 222333333333322 33566777777888888888888888888
Q ss_pred HhchhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHHhc
Q 036275 168 QSLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-----IDAGCYPDGGTAKVLISACSS 226 (271)
Q Consensus 168 ~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~~~~p~~~~~~~l~~~~~~ 226 (271)
+..... +..-|...|..+|+.-...|+..-..++..+- .+.|+..+...-..+-+.+.+
T Consensus 226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 765543 44556677888888888888887777776652 355666676666665555443
No 246
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.57 E-value=0.2 Score=39.98 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-----AGCYPDGGTAKV 219 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 219 (271)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|...|+.+.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 344555555555555555555555555442 23445555555555555555555555554432 455555555444
Q ss_pred HHHH
Q 036275 220 LISA 223 (271)
Q Consensus 220 l~~~ 223 (271)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 247
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=1.5 Score=39.50 Aligned_cols=81 Identities=9% Similarity=0.029 Sum_probs=40.5
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036275 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221 (271)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 221 (271)
||...|-.-+.+++..+++++-+++-+..+ ++.-|...+.+|.+.|+.++|.+.+-+.-. .. -..
T Consensus 713 pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv 777 (829)
T KOG2280|consen 713 PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKV 777 (829)
T ss_pred cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHH
Confidence 455555555555555555555555444433 233455555556666666666555544211 11 334
Q ss_pred HHHhccCcHHHHHHHH
Q 036275 222 SACSSEDQIEQVTTLV 237 (271)
Q Consensus 222 ~~~~~~g~~~~a~~~~ 237 (271)
.+|.+.|++.+|.++-
T Consensus 778 ~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 778 KAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhccHHHHHHHH
Confidence 4455555555555443
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=0.38 Score=37.91 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=61.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhchhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRL--KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPD-GGTAKVLI 221 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~l~ 221 (271)
.|+.-+..+ +.|++.+|...|....+... .-....+..|..++...|+++.|..+|..+... +-.|- ..++--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 465554443 44557777777777665421 112335666777777777777777777766542 22222 24455556
Q ss_pred HHHhccCcHHHHHHHHHHHHhcccchhHH
Q 036275 222 SACSSEDQIEQVTTLVRTMHKDMKTALPI 250 (271)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 250 (271)
.+....|+.++|...|+++.+..+....+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 66667777777777777777766655443
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.46 E-value=1.5 Score=37.80 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhchhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 149 ILINIYGRGGFIEKMEGLFQSLPAKRLK-PDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
.+..++-+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..++.+--
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3455555667777777777776643211 123356667777777777777777776643
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.33 E-value=0.62 Score=32.60 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=78.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 036275 86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165 (271)
Q Consensus 86 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 165 (271)
-.|.+++..++..+...+. +..-+|-+|---...-+=+-..++++.+-+. .|... +|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISK----------CGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-----------S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCchh----------hcchHHHHH
Confidence 3466666666666665531 3334444444444444444445555544332 23322 233333333
Q ss_pred HHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 166 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
.+-.+- .+.......+......|.-+...+++.++...+ .++......+..+|.+.|+..++.+++++.-+.|.
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 322221 144566777888899999999999999987644 78888999999999999999999999999988775
Q ss_pred c
Q 036275 246 T 246 (271)
Q Consensus 246 ~ 246 (271)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.32 E-value=0.62 Score=32.54 Aligned_cols=91 Identities=13% Similarity=-0.009 Sum_probs=54.9
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH---HHHHHHHHHhcCC
Q 036275 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT---WTSRLAAYSRKKL 194 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~ 194 (271)
+.+..|+++.|++.|.+.... .+.....||.-..++--+|+.++|++=+++..+..-.-+... |-.-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345667777777777776664 245567777777777777777777777776655321112222 2222334556677
Q ss_pred HHHHHHHHHHHHHCC
Q 036275 195 YRRCLEIFEEMIDAG 209 (271)
Q Consensus 195 ~~~a~~~~~~m~~~~ 209 (271)
.+.|..=|...-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777766666655555
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.28 E-value=0.81 Score=33.68 Aligned_cols=53 Identities=8% Similarity=0.020 Sum_probs=23.0
Q ss_pred HcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
...|-+++...-.+.+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34444555444444444333222222333344444445555555555554443
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.14 E-value=1.3 Score=36.64 Aligned_cols=221 Identities=13% Similarity=0.011 Sum_probs=98.4
Q ss_pred HHHH-hcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HH---HHCC-CCCCHHHHHHHHHHH
Q 036275 48 VFIF-SIYFSDAHAVFEEMKRL--GITPTMKSHMLLLTAYSKTGNVAKCEGVIN-QM---HKSG-LKPDTFVINSMLNLY 119 (271)
Q Consensus 48 l~~~-~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~m---~~~~-~~~~~~~~~~li~~~ 119 (271)
+..| ..+.++|+..|.....+ +..---.+|..+..+.++.|.+++++..-- +| .+.. -..--..|..|.+++
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSN 93 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 66666666666655432 111122344555555666665555443321 11 1100 001112344444555
Q ss_pred HccCCHhHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC-----CCCCHHHHHHHHHHHH
Q 036275 120 GRLGQFEKMEEVLTAMEKG-SYAA---DISTYNILINIYGRGGFIEKMEGLFQSLPAKR-----LKPDVVTWTSRLAAYS 190 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~ 190 (271)
-+..++.+++.+-..-... |..| .-...-++..++...+.++++++.|+.....- .......|-.|-.-|.
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 5555555555444332221 1111 11222335555555666666666666544210 1112235556666666
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHhccCcHHHHHHHHHHHHh----cccch-----hHHHH
Q 036275 191 RKKLYRRCLEIFEEMID----AGCYPDGGTA-----KVLISACSSEDQIEQVTTLVRTMHK----DMKTA-----LPIYF 252 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~----~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-----~~~~~ 252 (271)
+..|+++|.-+.....+ .++.--..-| -.+.-++...|.+-.|.+..++..+ .|... ...+.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 66666666554443322 2211101111 1223334555666556555555432 22222 12345
Q ss_pred HHHhhccccccchhhh
Q 036275 253 NLYGEKGVARSNLGQY 268 (271)
Q Consensus 253 ~~~~~~G~~~~a~~~~ 268 (271)
++|...|+.+.|..+|
T Consensus 254 DIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHhcccHhHHHHHH
Confidence 6666666666666555
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=1.4 Score=35.33 Aligned_cols=142 Identities=13% Similarity=0.151 Sum_probs=75.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 036275 82 TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161 (271)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 161 (271)
......|++.+|...|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777666655322 233444566677777777777777766654311111222223344444444444
Q ss_pred HHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccC
Q 036275 162 KMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSED 228 (271)
Q Consensus 162 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~g 228 (271)
+...+-.+.... | |...-..+...+...|+.++|.+.+-.+.. .|. -|...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcC
Confidence 444444444432 3 455555666666777777777666555543 232 23444455555554444
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.00 E-value=0.53 Score=37.60 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----CCCCCCHHHHH
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA-----KRLKPDVVTWT 183 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~ 183 (271)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|++.++++.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3467888999999999999999999988873 56788899999999999999999999888764 68889888877
Q ss_pred HHHHHHH
Q 036275 184 SRLAAYS 190 (271)
Q Consensus 184 ~li~~~~ 190 (271)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7777743
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.98 E-value=0.95 Score=32.84 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=31.4
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChhhH-HHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTY-NILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
.-.+.++.+++..+++-+.-- .|..... ..-...+...|++.+|.++|+++...
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344566777777777776653 2332211 12233356677777777777776654
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=94.97 E-value=2.1 Score=36.69 Aligned_cols=78 Identities=14% Similarity=0.008 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275 92 KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 92 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
+|.++-++..+.+ .-|......+..+..-.++++.|...|++....+ |-...+|........-+|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4444444444443 2244444444444445555555555555555542 2223444444444445555555555555533
No 258
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.96 E-value=2.2 Score=36.97 Aligned_cols=164 Identities=11% Similarity=0.110 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 036275 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 151 (271)
.|....-+++..+.....++-++.+..+|...| -+...|..++..|... ..+.-..+|+++.+..+ .|++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344455677777888878888888888888765 3666777888888777 45667778887777643 2333334444
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKP------DVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISAC 224 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~ 224 (271)
..|-+ ++.+++...|..+... +.| =...|..++..- ..+.+....+...... .|...-...+.-+..-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 7777777777765533 111 112444444321 3455666666666554 44444555666666777
Q ss_pred hccCcHHHHHHHHHHHHhc
Q 036275 225 SSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 225 ~~~g~~~~a~~~~~~~~~~ 243 (271)
....++++|.++++.+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 7777777777777766543
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.93 E-value=0.64 Score=32.49 Aligned_cols=94 Identities=9% Similarity=-0.039 Sum_probs=71.8
Q ss_pred HHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHH---HHHHHHHHhc
Q 036275 151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGT---AKVLISACSS 226 (271)
Q Consensus 151 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~---~~~l~~~~~~ 226 (271)
.-+.+..|+++.|++.|.+.... .+-....||.-.+++.-.|+.++|+.=+++.++ .|-. +... |..-...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 34678899999999999998765 233678999999999999999999999999887 3422 3322 2222334778
Q ss_pred cCcHHHHHHHHHHHHhcccc
Q 036275 227 EDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 227 ~g~~~~a~~~~~~~~~~~~~ 246 (271)
.|+.+.|..=|+...+-|.+
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 89999999999988766644
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=1.4 Score=36.09 Aligned_cols=153 Identities=7% Similarity=-0.065 Sum_probs=107.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCC
Q 036275 84 YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI----STYNILINIYGRGGF 159 (271)
Q Consensus 84 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~ 159 (271)
....|++.+|-..|+++.+.- +.|...++..=++|.-.|+.+.....++++...- .+|. ..-..+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 345678888888899988863 5577778888889999999999999998887651 3343 333344445668999
Q ss_pred HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036275 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA---GCYPDGGTAKVLISACSSEDQIEQVTTL 236 (271)
Q Consensus 160 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 236 (271)
+++|++.-++..+.+ +.|.-.-.+....+--.|++.++.++..+-... +--.-.+.|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999887764 345556667777777889999998887654321 1111223344444456667899999999
Q ss_pred HHH
Q 036275 237 VRT 239 (271)
Q Consensus 237 ~~~ 239 (271)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 884
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.81 E-value=0.12 Score=28.40 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=10.1
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHh
Q 036275 114 SMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 114 ~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
.+...|...|++++|+++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.78 E-value=1.8 Score=34.92 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=100.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------HHHHhcC-ChHHHHHHHHHHHHC--------CCCCCH-----H
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLL-------TAYSKTG-NVAKCEGVINQMHKS--------GLKPDT-----F 110 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-------~~~~~~~-~~~~a~~~~~~m~~~--------~~~~~~-----~ 110 (271)
.|+++.|..++.+........++.....+. ....+.+ +++.|..++++..+. ...|+. .
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 789999999999986643122333222222 2233455 888887777665432 123333 4
Q ss_pred HHHHHHHHHHccCCHhH---HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 111 VINSMLNLYGRLGQFEK---MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
+...++.+|...+..+. |..+++.+... ++..+.++-.-+..+.+.++.+++.+++.+|...- ......+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 56778888888887654 55566666443 33346667677888888999999999999998762 213445666555
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCHH
Q 036275 188 AY---SRKKLYRRCLEIFEEMIDAGCYPDGG 215 (271)
Q Consensus 188 ~~---~~~g~~~~a~~~~~~m~~~~~~p~~~ 215 (271)
.+ .. .....|...+..+....+.|...
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChh
Confidence 55 33 33456777777766554555553
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.61 E-value=1.4 Score=33.05 Aligned_cols=191 Identities=13% Similarity=0.055 Sum_probs=100.3
Q ss_pred hcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCHhHHH
Q 036275 52 SIYFSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN-LYGRLGQFEKME 129 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~ 129 (271)
.+.+..+...+...... ........+......+...++...+...+.........+ ......... .+...|+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~ 150 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEAL 150 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHH
Confidence 55666666666655442 223445555555566666666666666666666543332 111112222 566667777777
Q ss_pred HHHHHHHhCCC--CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 130 EVLTAMEKGSY--AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 130 ~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
..+++.....- ......+......+...++.+.+...+..............+..+...+...++.+.+...+.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 151 ELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 77766644210 0123333334444556666677776666665542111245566666666666666666666666655
Q ss_pred CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275 208 AGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 208 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
.. |+ ...+..+...+...+..+.+...+.+..+..+
T Consensus 231 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 231 LD--PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 42 22 23333333333355556666666666554443
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.58 E-value=0.19 Score=27.62 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 104 (271)
.++..+...|...|++++|.++|++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356667777777777777777777777763
No 265
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.53 Score=37.97 Aligned_cols=102 Identities=13% Similarity=0.177 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG---SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180 (271)
Q Consensus 104 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 180 (271)
|.+.+..+...++..--...+++.++.++-.+... ...|+...+ +.++.+. .-+.++++-++..=.+-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44445555555665555566677777776666543 112222222 2222222 234556777766666777777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
+++.+|..+.+.+++.+|.++.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777776666554
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.43 E-value=0.74 Score=34.29 Aligned_cols=97 Identities=11% Similarity=0.121 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHH--H
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD--ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWT--S 184 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~--~ 184 (271)
..+..+.+.|++.|+.+.|.+.+.++.+....+. ...+-.+|....-.+++..+...+.+....--.+. ...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3466777778888888888888887776644433 34556677777777787777777766553211111 11111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 036275 185 RLA--AYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 185 li~--~~~~~g~~~~a~~~~~~m~ 206 (271)
... .+...+++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234567777766665543
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.17 E-value=1.5 Score=31.78 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=24.9
Q ss_pred hcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275 52 SIYFSDAHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 103 (271)
.++.+++..+++-+.-..- .+...++.. ..+...|+|.+|..+|+++.+.
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 5566666666666554320 112222222 2245566666666666665544
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.11 E-value=2.7 Score=40.10 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=60.9
Q ss_pred CCCHHHHHHHH----HHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH--
Q 036275 106 KPDTFVINSML----NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV-- 179 (271)
Q Consensus 106 ~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-- 179 (271)
.|+...+..+. +.+...+.+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+..++.... +.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK---DELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHH
Confidence 45655544444 4445567777777777655332 356778888899999988888776431 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 180 VTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
.+-..|+.-+...+++-+|-++..+-..
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 2236777888889999888888877654
No 269
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=3.3 Score=34.95 Aligned_cols=164 Identities=10% Similarity=-0.024 Sum_probs=100.2
Q ss_pred HHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCCHhHHHHHHHHHHhCCCCCChhhH---
Q 036275 74 MKSHMLLL-TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN--LYGRLGQFEKMEEVLTAMEKGSYAADISTY--- 147 (271)
Q Consensus 74 ~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--- 147 (271)
-.+|..+- .++.-.|+.++|..+--..++..- .+. +...++ ++.-.++.+.+...|++....+ |+...-
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~ 242 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA 242 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH
Confidence 34444333 334456888888887766665531 122 233333 3445677888888888777653 443322
Q ss_pred ----------HHHHHHHHcCCCHHHHHHHHHhchhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 036275 148 ----------NILINIYGRGGFIEKMEGLFQSLPAK---RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214 (271)
Q Consensus 148 ----------~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 214 (271)
..-.+-..+.|++.+|.+.+.+.... ...|+...|........+.|+..+|..--++..... +.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~s 319 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SS 319 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HH
Confidence 12233456788888898888887653 345566677777777888888888888777766432 12
Q ss_pred HHHHHHH--HHHhccCcHHHHHHHHHHHHhccc
Q 036275 215 GTAKVLI--SACSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 215 ~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
.+...+. .++...+++++|.+-+++..+...
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2222333 335667888888888887765443
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.81 E-value=2.1 Score=32.05 Aligned_cols=212 Identities=16% Similarity=0.018 Sum_probs=148.0
Q ss_pred cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275 53 IYFSDAHAVFEEMKRLGIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~ 130 (271)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 5566666666666555422 13677888888899999999999998887753 234456677778888888899999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHH-HHHcCCCHHHHHHHHHhchhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 131 VLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAKRL--KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 999988764322 222333333 79999999999999999855321 12334455555557788999999999999887
Q ss_pred CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---hhHHHHHHHhhccccccchh
Q 036275 208 AGCYP-DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---ALPIYFNLYGEKGVARSNLG 266 (271)
Q Consensus 208 ~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~a~~ 266 (271)
.. .. ....+..+...+...++.+.+...+.......+. ........+...|..+++..
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 63 33 4677888888888889999999999998876654 22222333335554554443
No 271
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=2 Score=34.80 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=77.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChh
Q 036275 69 GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS 145 (271)
Q Consensus 69 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 145 (271)
|.+.++.+-..++..-....+.+.++..+-+++.+- ..|+... .++++.+.+ -++++++.++..-.+.|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 455666666677777777788999999888887651 2222222 234454443 45779999999889999999999
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
+++.+|+.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988887654
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.70 E-value=4.3 Score=35.18 Aligned_cols=145 Identities=12% Similarity=0.134 Sum_probs=88.7
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------------
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPT-MKSHMLLLTAYSKTGNVAKCEGVINQMHKSG----------------- 104 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------------- 104 (271)
+..+-.+. ..+...-++.-++..+.. |+ +..|..|. --......+++++|++..+.|
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEIN--PDCADAYILLA--EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 66667777 666666666666665543 33 23332222 223344677777777665321
Q ss_pred -------CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC
Q 036275 105 -------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176 (271)
Q Consensus 105 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 176 (271)
..|-..+-..+..++.+.|+.++|++.+.+|.+.. ..........|+.++...+.+.++..++.+-.....+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 01112222346666778899999999999997642 1123457778999999999999999999987544332
Q ss_pred CC-HHHHHHHHHHHHhc
Q 036275 177 PD-VVTWTSRLAAYSRK 192 (271)
Q Consensus 177 ~~-~~~~~~li~~~~~~ 192 (271)
.+ ...|+..+-.+...
T Consensus 328 kSAti~YTaALLkaRav 344 (539)
T PF04184_consen 328 KSATICYTAALLKARAV 344 (539)
T ss_pred chHHHHHHHHHHHHHhh
Confidence 22 34677666443333
No 273
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.65 E-value=1 Score=34.03 Aligned_cols=79 Identities=11% Similarity=-0.053 Sum_probs=59.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHcCCCHH
Q 036275 85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG---SYAADISTYNILINIYGRGGFIE 161 (271)
Q Consensus 85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~ 161 (271)
.....-+.|...|-++...+.--|+..-..|...|. ..+.++++.++-...+. +-.+|+..+..|+..|.+.|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 334345788888888888876656666666655555 67789999998877653 33578999999999999999998
Q ss_pred HHH
Q 036275 162 KME 164 (271)
Q Consensus 162 ~a~ 164 (271)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.64 E-value=0.21 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 036275 77 HMLLLTAYSKTGNVAKCEGVINQ 99 (271)
Q Consensus 77 ~~~li~~~~~~~~~~~a~~~~~~ 99 (271)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555544
No 275
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.59 E-value=4.2 Score=34.78 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=58.3
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHC--CCCC-----------
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA--YSKTGNVAKCEGVINQMHKS--GLKP----------- 107 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~--~~~~----------- 107 (271)
-+.++.+| .++.+.....+....+.. | ...|-.+..+ +.+.+.+.+|.+.+..-.+. +..|
T Consensus 49 ~grilnAffl~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~ 125 (549)
T PF07079_consen 49 GGRILNAFFLNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF 125 (549)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh
Confidence 45566666 666666666666665542 1 1223333332 33556666666666554443 2111
Q ss_pred -CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC----CChhhHHHHHHHHHc
Q 036275 108 -DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA----ADISTYNILINIYGR 156 (271)
Q Consensus 108 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~li~~~~~ 156 (271)
|-..=+..+..+...|++.++..+++++.+.=++ -+..+|+-++-.+++
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 1111244455666677777777776666654222 466666666655554
No 276
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.43 E-value=0.98 Score=38.73 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=85.2
Q ss_pred HccCCHhHHHH-HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036275 120 GRLGQFEKMEE-VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198 (271)
Q Consensus 120 ~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 198 (271)
...|+.-.|.+ ++.-+... +-+++........+...|+++.+...+...... +.....+...+++.....|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 34455554443 44444433 334444444555678889999999998877643 334667889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 199 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
..+-..|+...++ +.+......-.....|-+|++.-.|+++..-+++..
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9999999877655 444444434445567889999999999876554443
No 277
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.42 E-value=1.3 Score=29.32 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=15.3
Q ss_pred HHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 167 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
+..+....+.|++....+.+++|.+.+++..|.++|+-.+
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444333
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=2.7 Score=38.53 Aligned_cols=139 Identities=12% Similarity=0.146 Sum_probs=82.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 036275 85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164 (271)
Q Consensus 85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 164 (271)
.+.|++++|...|-+-... ++|+ .+|.-|........-..+++.+.+.|+. +...-..|+.+|.+.++.++-.
T Consensus 379 y~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 3567777777776554432 1222 2455556666666667777777777753 3444467788888888888877
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 165 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
++.+... .|... .-....+..+.+.+-.++|..+-..... +......++ ...+++++|.+++..+.
T Consensus 452 efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 452 EFISKCD-KGEWF--FDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhcCC-Cccee--eeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7777666 33221 1234555566666666666655444321 233333333 44577888888887764
No 279
>PRK11906 transcriptional regulator; Provisional
Probab=93.33 E-value=4.8 Score=34.60 Aligned_cols=162 Identities=10% Similarity=0.021 Sum_probs=107.1
Q ss_pred HHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHc---------cCCHhHHHHHHHHHH
Q 036275 75 KSH--MLLLTAYSKT-----GNVAKCEGVINQMHK-SGLKPDT-FVINSMLNLYGR---------LGQFEKMEEVLTAME 136 (271)
Q Consensus 75 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~-~~~~~~~-~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 136 (271)
..| ...+.+.... ...+.|+.+|.+... +...|+- ..|..+..++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5556555442 235678888888872 2335553 334333332221 234556777777777
Q ss_pred hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH
Q 036275 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDG 214 (271)
Q Consensus 137 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~ 214 (271)
+.+ +.|......+..+..-.++++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+. ..+.-.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 775 567888888888888899999999999998876 565 456666666777899999999999996654 222334
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275 215 GTAKVLISACSSEDQIEQVTTLVRTM 240 (271)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 240 (271)
.+....+..|...+ ++.+..++-+-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 45555566777654 66677666543
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.31 E-value=3.1 Score=34.42 Aligned_cols=186 Identities=10% Similarity=0.044 Sum_probs=94.8
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---C-CCCHHHHHHHHHHHHccCCHhH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---L-KPDTFVINSMLNLYGRLGQFEK 127 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~-~~~~~~~~~li~~~~~~g~~~~ 127 (271)
.|+|+...+........ .++...|..+... ..++.+++....++....- + ......|........+...+.+
T Consensus 11 l~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~E 86 (352)
T PF02259_consen 11 LGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVE 86 (352)
T ss_pred cCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHH
Confidence 78888755544444322 2345555554433 7788888888877665431 1 1122233333333334434444
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHH-----cCCCHHHHHHHHH---hchh--CCCCCCHHHHHHHHHHHHhcCCHHH
Q 036275 128 MEEVLTAMEKGSYAADISTYNILINIYG-----RGGFIEKMEGLFQ---SLPA--KRLKPDVVTWTSRLAAYSRKKLYRR 197 (271)
Q Consensus 128 a~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g~~~~a~~~~~---~m~~--~g~~~~~~~~~~li~~~~~~g~~~~ 197 (271)
..++.+-..... .+......++.... ..++++.-..++. .+.. ........+|..+.+.+.+.|+++.
T Consensus 87 lee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~ 164 (352)
T PF02259_consen 87 LEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQL 164 (352)
T ss_pred HHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHH
Confidence 444433332110 00111122221111 0222222222221 1111 1112344678888888899999999
Q ss_pred HHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 198 CLEIFEEMIDAGCYP---DGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 198 a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
|...+..+...+... +......-.+..-..|+..+|...+++..+.
T Consensus 165 A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 165 ALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999888887643211 2334444456667778888898888887763
No 281
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.25 E-value=0.077 Score=37.86 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=50.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159 (271)
Q Consensus 80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 159 (271)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556666777777777777776655556777777777777777666666666511 11222345555566666
Q ss_pred HHHHHHHHHhch
Q 036275 160 IEKMEGLFQSLP 171 (271)
Q Consensus 160 ~~~a~~~~~~m~ 171 (271)
++++.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666666555543
No 282
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=1.6 Score=40.00 Aligned_cols=135 Identities=18% Similarity=0.302 Sum_probs=84.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|...|-+-... +.| ..+|.-|....+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++
T Consensus 381 Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 381 KGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred cCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence 88888888877655432 121 13566666777777778888999999876 666668899999999998887777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (271)
.+.-.+.....| ....+..+.+.+-.++|..+-..... +......++ -..+++++|.+.+..
T Consensus 454 I~~~~~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 454 ISKCDKGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred HhcCCCcceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 665542111112 34566666666767776666554433 222222222 234556666555543
No 283
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.04 E-value=6.5 Score=35.34 Aligned_cols=184 Identities=9% Similarity=0.051 Sum_probs=95.6
Q ss_pred chHHHHHH----hcCHHHHHHHHHHHHHcCCCC-CHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036275 44 PNLFVFIF----SIYFSDAHAVFEEMKRLGITP-TMKSHM-----LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN 113 (271)
Q Consensus 44 y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 113 (271)
.+.++.+- .|++.+|-++|.+- |... -.+.|+ -...-+...|..++-..+.++-.+- ..+..--.
T Consensus 633 P~~iLlA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePk 707 (1081)
T KOG1538|consen 633 PNDLLLADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPK 707 (1081)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcH
Confidence 55554443 88999988888753 3211 111121 1223333444444333333222111 11111112
Q ss_pred HHHHHHHccCCHhHHHHHHHH------HHhCCCC---CChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 036275 114 SMLNLYGRLGQFEKMEEVLTA------MEKGSYA---ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184 (271)
Q Consensus 114 ~li~~~~~~g~~~~a~~~~~~------m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 184 (271)
+....+...|+.++|..+..+ +.+.+.+ .+..+...+..-+.+...+.-|-++|..|-. ...
T Consensus 708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ks 778 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKS 778 (1081)
T ss_pred HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHH
Confidence 344556677887777765321 1111111 2344555555556666777778888877642 234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG-----------TAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
+++.+...++|.+|..+-+..-+. .||.. -|...-++|.+.|+-.+|.++++++...
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 566677788888888877665432 23321 1333345567777777777777776543
No 284
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=4 Score=32.85 Aligned_cols=165 Identities=9% Similarity=0.074 Sum_probs=108.5
Q ss_pred CCchhhHHHHHHHhhcC-----chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036275 27 PYPSHFMLINFLLLQHT-----PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM 100 (271)
Q Consensus 27 ~~~~~~~~~~f~~~~~~-----y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 100 (271)
..|....++..++.... +....... .|++.+|...|+...... +-+...--.+..+|...|+.+.|..++..+
T Consensus 116 ~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 116 AQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred CCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 33444444555544433 33333444 999999999999998775 445677778999999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC-CCCH
Q 036275 101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-KPDV 179 (271)
Q Consensus 101 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~ 179 (271)
...--.........-|..+.+.....+...+-.+.-.. +-|...--.+...+...|+.++|.+.+-.+..... .-|.
T Consensus 195 P~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 195 PLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 66532222233333455566666655555555555443 44777777888999999999999888777665421 1234
Q ss_pred HHHHHHHHHHHhcCC
Q 036275 180 VTWTSRLAAYSRKKL 194 (271)
Q Consensus 180 ~~~~~li~~~~~~g~ 194 (271)
..-..++..+.--|.
T Consensus 273 ~~Rk~lle~f~~~g~ 287 (304)
T COG3118 273 EARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHHHhcCC
Confidence 455566666555553
No 285
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.96 E-value=4 Score=32.74 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=79.5
Q ss_pred HhHHHHHHHHHHh-CCCCCChhhHHHHHHHHHc-CC-CHHHHHHHHHhch-hCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275 125 FEKMEEVLTAMEK-GSYAADISTYNILINIYGR-GG-FIEKMEGLFQSLP-AKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 125 ~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
..+|..+|+...- ..+-.|..+...+++.... .+ ....-.++.+-+. ..|-.++..+...+|..+++.+++.+.++
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666653221 2244566666677766665 22 2222233333332 23356788899999999999999999999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275 201 IFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 201 ~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
+++..... +..-|...|..+|+.-...||..-...++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 99987764 5566889999999999999999888888775
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.96 E-value=0.33 Score=25.30 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~ 204 (271)
|..|...|.+.|++++|..++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555544
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.92 E-value=1.1 Score=29.35 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036275 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH 101 (271)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 101 (271)
++.+-++.+...+..|++....+.+++|-+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555556666666666666666666666666665555
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.89 E-value=0.22 Score=25.68 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=19.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 036275 63 EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE 94 (271)
Q Consensus 63 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 94 (271)
++..+.+ |-++.+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444 556777777777777777777664
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.74 E-value=2 Score=28.57 Aligned_cols=65 Identities=8% Similarity=0.175 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 180 VTWTSRLAAYSRKKLY--RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 180 ~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
.-|+.--..|....+. -+..+-+..+....+.|+..+..+.+++|.+.+|+..|.++++-+..+.
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 3444444455444443 3677778888888999999999999999999999999999999987543
No 290
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.73 E-value=3.6 Score=31.63 Aligned_cols=187 Identities=12% Similarity=0.018 Sum_probs=98.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|-+..|.-=|.+..... |.-+.+||.+.--+...|+++.|.+.|+...+....-+-...|--|.. .-.|++..|.+=
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHH
Confidence 344444444444444433 334677888888888888888888888888876543333333333333 346777777776
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHH-cCCCHHHHHH-HHHhchhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 036275 132 LTAMEKGSYAADISTYNILINIYG-RGGFIEKMEG-LFQSLPAKRLKPDVVTWTSRLAAYSRKK-LYRRCLEIFEEMIDA 208 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~ 208 (271)
+...-+.. +.|+ |.+|---.. ..-+..+|.. +.++.... |..-|...|-.+.--. ..+.+.+-.....+.
T Consensus 156 ~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~ 228 (297)
T COG4785 156 LLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKADATD 228 (297)
T ss_pred HHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHhhccc
Confidence 66555542 1122 222211111 2234445543 33333332 5555655554433221 122222222111111
Q ss_pred CC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275 209 GC---YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 209 ~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
+- ..-..||-.+.+-+...|+.++|..+|+-....++..
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 00 1123577788888888888888888888777665544
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.61 E-value=2.8 Score=30.04 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=28.5
Q ss_pred hcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036275 52 SIYFSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG 104 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 104 (271)
.++++++..+++.|.-.. -.+...++...+ +...|+|++|..+|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 666666666666665432 012233333333 556667777777777666653
No 292
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.36 E-value=7.1 Score=34.08 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=121.6
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
.-+++..+ +.++.-++.+..+|...| -+-..|-.++.+|... .-+.-..+|+++.+..+. |.+.-..|...|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 34455555 666777788888888875 4778888999999998 567788999999998765 56655666666655
Q ss_pred cCCHhHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHcCCCHHHHHHHHHhchh-CCCCCCHHHHHHHHHHHHhcCCH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAA-----DISTYNILINIYGRGGFIEKMEGLFQSLPA-KRLKPDVVTWTSRLAAYSRKKLY 195 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~ 195 (271)
++.+.+..+|.....+=++. =...|.-|+..- ..+.+....+...+.. .|...-.+.+..+-.-|....++
T Consensus 145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 88889999998887653321 123455554321 3566777777776654 34445567788888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275 196 RRCLEIFEEMIDAGCYPDGGTAKVLISAC 224 (271)
Q Consensus 196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 224 (271)
++|.+++...++.. .-|.-.-..++.-+
T Consensus 222 ~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 222 TEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 99999999888764 33554545555543
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.76 E-value=0.23 Score=25.64 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=11.5
Q ss_pred ChhhHHHHHHHHHcCCCHHHHH
Q 036275 143 DISTYNILINIYGRGGFIEKME 164 (271)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~a~ 164 (271)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555543
No 294
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=91.41 E-value=2 Score=29.79 Aligned_cols=46 Identities=9% Similarity=0.252 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 197 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
+..+.+..+....+.|+......-+++|.+-+|+..|.++|+-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555555543
No 295
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.35 E-value=4 Score=29.17 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=47.2
Q ss_pred HHHCCCCCCHH--HHHHHHHHHHccCCHhHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHcCCC-HHHHHHHHHhch
Q 036275 100 MHKSGLKPDTF--VINSMLNLYGRLGQFEKMEEVLTAMEKGS-----YAADISTYNILINIYGRGGF-IEKMEGLFQSLP 171 (271)
Q Consensus 100 m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 171 (271)
|.+.+..++.. ..++++.-....+++.....+++.+..-. -..+...|.+++.+.++..- .--+..+|.-++
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34444444443 35666666667777777777776663210 01234445555555544443 233444555555
Q ss_pred hCCCCCCHHHHHHHHHHHHh
Q 036275 172 AKRLKPDVVTWTSRLAAYSR 191 (271)
Q Consensus 172 ~~g~~~~~~~~~~li~~~~~ 191 (271)
+.+.++++.-|..+|.++.+
T Consensus 108 ~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHc
Confidence 44455555555555555444
No 296
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=6.2 Score=30.98 Aligned_cols=191 Identities=10% Similarity=0.069 Sum_probs=107.7
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTM------KSHMLLLTAYSKTGNVAKCEGVINQMH----KSGLKPDTFV 111 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~ 111 (271)
|.....+| ..+++.|...+.+..+- ...+. ..|...+...-+...+.++..++++.. +.| .|++..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtAA 111 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTAA 111 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchHH
Confidence 55555666 88899988888777532 12222 223333333334455667777776553 233 445433
Q ss_pred HHHHHHH--HHccCCHhHHHHHHHHHHhC---C--CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh----CCCCCCH-
Q 036275 112 INSMLNL--YGRLGQFEKMEEVLTAMEKG---S--YAADISTYNILINIYGRGGFIEKMEGLFQSLPA----KRLKPDV- 179 (271)
Q Consensus 112 ~~~li~~--~~~~g~~~~a~~~~~~m~~~---~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~- 179 (271)
. +|-++ ....-++++|++++++.... + ...-...+...-+.+.+...+++|-..|.+-.. ..--++.
T Consensus 112 m-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 112 M-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred H-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 2 11111 23455677788777765432 1 011223445556667777777776655554221 1111222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C--CCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036275 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-C--YPDGGTAKVLISACSSEDQIEQVTTLVR 238 (271)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 238 (271)
..|-..|-.+....++..|.++++.--+-+ + .-+..+...|+.+|- .||.+++..++.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 235556666777889999999998855421 1 235577888888875 488888777654
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.93 E-value=9.5 Score=33.99 Aligned_cols=148 Identities=11% Similarity=0.035 Sum_probs=75.8
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|+++.|..++-.+. ...-+.+...+.+.|-.++|+++ .+|.... .....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHH
Confidence 566666655444332 12334455555566655555443 2233221 2333466677766665
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 211 (271)
..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+.+....+-....+.| .
T Consensus 660 a~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~ 723 (794)
T KOG0276|consen 660 AVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-K 723 (794)
T ss_pred HHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-c
Confidence 4333 2455667777777777777777777765542 4445555555555554444444444444 2
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275 212 PDGGTAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
.| ...-++...|+++++.+++.+
T Consensus 724 ~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 NN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 12 122233444566655555443
No 298
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.91 E-value=11 Score=33.65 Aligned_cols=180 Identities=11% Similarity=0.073 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccC-
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTA---YSKTGNVAKCEGVINQMHK-------SGLKPDTFVINSMLNLYGRLG- 123 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g- 123 (271)
...|.+.++...+.|. ......-.++-. +....+.+.|+.+|+...+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 5678888888888772 122222222222 3355789999999988876 44 2234555666666643
Q ss_pred ----CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH----hcCC
Q 036275 124 ----QFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS----RKKL 194 (271)
Q Consensus 124 ----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~ 194 (271)
+.+.|..++...-+.|. |+....-..+..... ..+...|.++|......|. ...+-.+...|. ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCC
Confidence 56778999988888773 444433333222222 2467889999999888874 223333333322 3457
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 195 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
.+.|...+++..+.| .|...--...+..+.. +..+.+.-.+..+.+-+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 788888888888887 3332222222333333 66666655555554443
No 299
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=90.87 E-value=2.7 Score=27.00 Aligned_cols=66 Identities=6% Similarity=0.119 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccc
Q 036275 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSN 264 (271)
Q Consensus 197 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a 264 (271)
.+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .++.-++.+++++.+.|..+=|
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 45678888888884 455565655554456789999999999999 8888899999999888875544
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.54 E-value=0.87 Score=24.14 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQM 100 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m 100 (271)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444555555555555555555444
No 301
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.53 E-value=3.5 Score=27.11 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 163 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 205 (271)
+.+-+..+....+.|++....+.+++|.+.+|+..|.++|+-.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444433
No 302
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.47 E-value=0.099 Score=37.30 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=58.0
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 036275 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194 (271)
Q Consensus 115 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 194 (271)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.... .-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 5667777888888888999888766556788889999999999888888888883322 122445555566666
Q ss_pred HHHHHHHHHHH
Q 036275 195 YRRCLEIFEEM 205 (271)
Q Consensus 195 ~~~a~~~~~~m 205 (271)
+++|..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 303
>PF13934 ELYS: Nuclear pore complex assembly
Probab=90.37 E-value=4.6 Score=31.42 Aligned_cols=110 Identities=13% Similarity=0.149 Sum_probs=69.5
Q ss_pred HcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh
Q 036275 67 RLGITPTMKSHMLLLTAYSKT--GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI 144 (271)
Q Consensus 67 ~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 144 (271)
..+++ ..|...+.++... +++++|.+.+-. -.+.|+ .-.-++.++...|+.+.|..++..+.-.. .+.
T Consensus 72 ~f~ip---~~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~ 141 (226)
T PF13934_consen 72 AFGIP---PKYIKFIQGFWLLDHGDFEEALELLSH---PSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSP 141 (226)
T ss_pred HhCCC---HHHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCH
Confidence 34555 3466677777654 667777776622 222222 22357888888899999999987764432 233
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 190 (271)
.....++.. ..++.+.+|..+-+...... ....+..++..+.
T Consensus 142 ~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 142 EALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 334444444 66789999999888877631 2556777777766
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.17 E-value=0.96 Score=22.87 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHK 102 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 102 (271)
+|..+..++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444444444444444444444443
No 305
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.93 E-value=14 Score=33.11 Aligned_cols=169 Identities=17% Similarity=0.113 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHH--H-HHccCCHhHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHcCC-
Q 036275 90 VAKCEGVINQMHKSGLKPDTFVINSMLN--L-YGRLGQFEKMEEVLTAMEK-------GSYAADISTYNILINIYGRGG- 158 (271)
Q Consensus 90 ~~~a~~~~~~m~~~~~~~~~~~~~~li~--~-~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g- 158 (271)
...+..+++...+.|.. .....-.++. + +....|.+.|+.+|+.+.+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 46788999888887633 2222222222 2 4466799999999998877 55 3345667777777743
Q ss_pred ----CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHH
Q 036275 159 ----FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA--CSSEDQIE 231 (271)
Q Consensus 159 ----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~ 231 (271)
+.+.|..++......|. |+....-..+.-... ..+...|.+.|...-..|.. ...-+..+.-. .....+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 67789999999988873 444333322222222 35678999999999988843 33222222222 22456888
Q ss_pred HHHHHHHHHHhcccchhHHHH---HHHhhccccccch
Q 036275 232 QVTTLVRTMHKDMKTALPIYF---NLYGEKGVARSNL 265 (271)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~---~~~~~~G~~~~a~ 265 (271)
.|..++++..+.+.+.....+ ..+.. |..+.++
T Consensus 382 ~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~ 417 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTAL 417 (552)
T ss_pred HHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHH
Confidence 999999999888854433333 33333 4444443
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.76 E-value=12 Score=32.15 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=48.2
Q ss_pred hcCHHHHHHHHHHHHHc--CCCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRL--GITPT------------MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL----KPDTFVIN 113 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~--~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~ 113 (271)
.++++.|++.+.....+ +..+. -..=+..+.++...|++.++..+++++...=+ ..+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 88888888888877655 32221 11123566777788999998888888776533 37788888
Q ss_pred HHHHHHHcc
Q 036275 114 SMLNLYGRL 122 (271)
Q Consensus 114 ~li~~~~~~ 122 (271)
.++-.+.+.
T Consensus 172 ~~vlmlsrS 180 (549)
T PF07079_consen 172 RAVLMLSRS 180 (549)
T ss_pred HHHHHHhHH
Confidence 877666543
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.72 E-value=1.1 Score=23.78 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=11.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444455555555555544443
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.42 E-value=1.2 Score=22.38 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 036275 77 HMLLLTAYSKTGNVAKCEGVINQMHK 102 (271)
Q Consensus 77 ~~~li~~~~~~~~~~~a~~~~~~m~~ 102 (271)
|..+...+.+.|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444455555555555544443
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.73 E-value=1.6 Score=21.97 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
|..+..+|...|++++|...|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3344444444444444444444433
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.14 E-value=17 Score=31.65 Aligned_cols=123 Identities=10% Similarity=0.087 Sum_probs=79.2
Q ss_pred HHHHH-hcCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275 47 FVFIF-SIYFSDAHA-VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124 (271)
Q Consensus 47 ll~~~-~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 124 (271)
+-..+ .|++..|-+ +++.++...-.|+.....+.| +...|+++.+.+.+...... +..+..+..++++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 34455 777777654 445454443345544444433 56778899888887655443 23355677888999999999
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 125 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
+++|..+-+.|....++ +...........-..|-++++.-.|+++...
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99999998888877553 3333333333344557788888888887654
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.68 E-value=10 Score=28.65 Aligned_cols=133 Identities=8% Similarity=-0.007 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS--MLNLYGRLGQFEKMEEVLTAMEKGSYAAD--ISTYN 148 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~ 148 (271)
-+..|..++..... +.. +.....+++........-.++.+ +...+...|++++|+.-++.........+ ..+--
T Consensus 53 AS~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 53 ASAQYQNAIKAVQA-KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHHHhc-CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 44556666665542 222 55555566665532212222332 34556778888888888877665421111 11222
Q ss_pred HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275 149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209 (271)
Q Consensus 149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 209 (271)
-|.+.....|.+++|+.+++.....+. .......-...+...|+-++|..-|...++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 345567778888888888887776532 12223334467788888888888888877764
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.35 E-value=5.9 Score=30.55 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHH
Q 036275 78 MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133 (271)
Q Consensus 78 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 133 (271)
+..++.+.+.+.+++++...++-.+.. +.|..+-..++..++-.|++++|..-++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 334444555555555555554444432 2233444455555555555555544443
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.32 E-value=2.2 Score=21.30 Aligned_cols=22 Identities=27% Similarity=0.316 Sum_probs=8.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 036275 184 SRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 184 ~li~~~~~~g~~~~a~~~~~~m 205 (271)
.+...+...|++++|.+.|++.
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 3333444444444444444443
No 314
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.23 E-value=5.7 Score=29.54 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHccC--
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT---GNVAKCEGVINQMHKS-----GLKPDT-FVINSMLNLYGRLG-- 123 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~li~~~~~~g-- 123 (271)
|+.|.+.++.-...+ |.|+..++....++... ....++.+++++..+. .+.|+. .++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455666666655554 66777666555555433 3333444444333221 235554 45656666655433
Q ss_pred --C-------HhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036275 124 --Q-------FEKMEEVLTAMEKGSYAADISTYNILINIYG 155 (271)
Q Consensus 124 --~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 155 (271)
+ +++|.+.|+..... .|+..+|+.-+....
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA 124 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 2 34444455554443 577777777766653
No 315
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.07 E-value=9.1 Score=27.41 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=68.0
Q ss_pred HHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCC-HhHHHHHHHHH
Q 036275 64 EMKRLGITPTMKS--HMLLLTAYSKTGNVAKCEGVINQMHKSG-----LKPDTFVINSMLNLYGRLGQ-FEKMEEVLTAM 135 (271)
Q Consensus 64 ~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m 135 (271)
.|.+.+..++..+ .+.++......+++...+.+++.+.... -..+...|++++.+..+..- .--+..+|..|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 3444454544433 4667777777788888888887774321 13456678999998866655 45577888999
Q ss_pred HhCCCCCChhhHHHHHHHHHcCCCH
Q 036275 136 EKGSYAADISTYNILINIYGRGGFI 160 (271)
Q Consensus 136 ~~~~~~~~~~~~~~li~~~~~~g~~ 160 (271)
++.+.++++..|..+|.++.+....
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 9888889999999999988876433
No 316
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.94 E-value=7 Score=25.98 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 125 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (271)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+ ..||...|-.|-.. +.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 45565555555544311 2222223344556666666666666555 24555555544332 34444555555555
Q ss_pred HHHCCCCCCHHHHH
Q 036275 205 MIDAGCYPDGGTAK 218 (271)
Q Consensus 205 m~~~~~~p~~~~~~ 218 (271)
|...| .|....|.
T Consensus 94 la~sg-~p~lq~Fa 106 (115)
T TIGR02508 94 LAASG-DPRLQTFV 106 (115)
T ss_pred HHhCC-CHHHHHHH
Confidence 55554 44444443
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.60 E-value=12 Score=33.44 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=91.4
Q ss_pred HHHHHhhcC-chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036275 35 INFLLLQHT-PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV 111 (271)
Q Consensus 35 ~~f~~~~~~-y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 111 (271)
.++..+|+. -+.+.+-+ .|-.++|+++ .+|+.- -.....+.|+++.|.++..+.. +..-
T Consensus 607 ~vLp~I~k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~K 668 (794)
T KOG0276|consen 607 GVLPTIPKEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVK 668 (794)
T ss_pred cccccCchhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHH
Confidence 445555544 33333333 5656655543 233322 2233457788898888765533 5667
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 036275 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191 (271)
Q Consensus 112 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 191 (271)
|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-...++.|. .|...-+|..
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l 733 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFL 733 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHH
Confidence 99999999999999999999876654 45677778888888877777777776653 3444556677
Q ss_pred cCCHHHHHHHHHH
Q 036275 192 KKLYRRCLEIFEE 204 (271)
Q Consensus 192 ~g~~~~a~~~~~~ 204 (271)
.|+++++.+++.+
T Consensus 734 ~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 734 SGDYEECLELLIS 746 (794)
T ss_pred cCCHHHHHHHHHh
Confidence 8999998887755
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.50 E-value=1.6 Score=21.59 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=10.3
Q ss_pred HHHhccCcHHHHHHHHHHHHhc
Q 036275 222 SACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
.++.+.|+.++|.+.|+++.+.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 3344444555555555544443
No 319
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=86.49 E-value=1.5 Score=36.97 Aligned_cols=133 Identities=16% Similarity=-0.000 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHccCCHhHHHHHHHHHH----hCCC-CCCh
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMH----KSGLK-PDTFVINSMLNLYGRLGQFEKMEEVLTAME----KGSY-AADI 144 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~~~~ 144 (271)
..|..|.+.|.-.|+++.|+...+.-. +-|-. .-...+..|.++++-.|+++.|.+.|+... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 446666666777788888877764432 22321 123457778888888888888888877543 2221 1234
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPA----K-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
.++-.|.+.|.-..++++|+..+.+-.. . ...-....|-.|..+|...|..++|+.+....++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566788888888888888888775332 1 1122345777888888888888888777665443
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.35 E-value=1.5 Score=20.81 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=6.4
Q ss_pred HHHHHcCCCHHHHHHH
Q 036275 151 INIYGRGGFIEKMEGL 166 (271)
Q Consensus 151 i~~~~~~g~~~~a~~~ 166 (271)
..++...|++++|..+
T Consensus 8 a~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 8 ARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3333444444444433
No 321
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=85.64 E-value=16 Score=28.73 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=74.9
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC-C-----------CCCCHHHHHHHH
Q 036275 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-R-----------LKPDVVTWTSRL 186 (271)
Q Consensus 119 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-----------~~~~~~~~~~li 186 (271)
|.+..+.+--.++.+-.+..+++-+.....+++ +...|+...|+.-++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 445555444445555555556666666665554 66789999998888764421 1 167888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 036275 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT 234 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 234 (271)
..|. .+++++|.+++.++-+.|+.|.. ..+.+++.+-... ..+-.
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~~~-~~E~~ 291 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVVKNMD-VAESL 291 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhcc-HHHHH
Confidence 8754 57899999999999999988765 4566777765543 44333
No 322
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.46 E-value=15 Score=28.42 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
||--+.+-+...|+.++|..+|+-....
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4444455555555555555555554443
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.44 E-value=16 Score=28.63 Aligned_cols=21 Identities=5% Similarity=0.154 Sum_probs=13.0
Q ss_pred HhccCcHHHHHHHHHHHHhcc
Q 036275 224 CSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~~ 244 (271)
-...+++.+|.++|+++.+..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445566677777777665543
No 324
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.33 E-value=8.3 Score=26.83 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=29.5
Q ss_pred HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 163 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
..+-+..+..-.+.|++......++++.+.+|+..|.++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444445555556677777777777777777777777777666543
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.10 E-value=14 Score=27.56 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhh-HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH-HHHHH
Q 036275 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST-YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV-TWTSR 185 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~l 185 (271)
+-..|..-++. ++.+..++|+.-|.++.+.|..--++. ---........|+...|...|+++-.....|-.. -.-.|
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 44566665554 456667888888888887765432221 1223344667788888888888877653333322 11111
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275 186 --LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 186 --i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
.-.+..+|.++......+-+-..+-+.-...-..|--+-.+.|++.+|...|..+......+
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 12345678888877777766655433333444556666678888888888888887654433
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.06 E-value=3.4 Score=20.67 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 036275 77 HMLLLTAYSKTGNVAKCEGVINQMH 101 (271)
Q Consensus 77 ~~~li~~~~~~~~~~~a~~~~~~m~ 101 (271)
|..+...|.+.|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444555555555544443
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.01 E-value=34 Score=32.11 Aligned_cols=191 Identities=10% Similarity=0.062 Sum_probs=107.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCH----H---HHHHHHHH-HHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTM----K---SHMLLLTA-YSKTGNVAKCEGVINQMHKS----GLKPDTFVINSMLNLY 119 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~----~---~~~~li~~-~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~ 119 (271)
.+++++|..+..++...-..|+. . .++.+-.. ....|+++.|.++-+..... -..+....+..+..+.
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 89999999999988665322221 1 23333222 23568889998888766654 2334556677778888
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCChhh---HHHH--HHHHHcCCC--HHHHHHHHHhchhC-----CC-CCCHHHHHHHH
Q 036275 120 GRLGQFEKMEEVLTAMEKGSYAADIST---YNIL--INIYGRGGF--IEKMEGLFQSLPAK-----RL-KPDVVTWTSRL 186 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~l--i~~~~~~g~--~~~a~~~~~~m~~~-----g~-~~~~~~~~~li 186 (271)
.-.|++++|..+..+..+.--.-+... |..+ ...+..+|+ ..+.+..|...... ++ .+-.-++..+.
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll 587 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL 587 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence 889999999988877655421223222 2222 334556673 33334444433321 10 11223555556
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHHHh
Q 036275 187 AAYSRK-KLYRRCLEIFEEMIDAGCYPDGGTAK--VLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 187 ~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
.++.+. +...++..-++........|-..-.. .|.+.....|+.++|...+.++..
T Consensus 588 ~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 588 RAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 665551 12222222233322232222222222 567778889999999999998865
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.66 E-value=10 Score=29.35 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=38.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG--LKPDTFVINSMLNL 118 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~ 118 (271)
.+++.+++....+=.+.+ |.|...-..++..++-.|+|++|..-++-.-... ..+-..+|..+|++
T Consensus 14 ~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 14 DNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 566666666666555543 4455566666777777777777766555444331 22334455555554
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.54 E-value=2.5 Score=23.30 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=9.6
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 036275 116 LNLYGRLGQFEKMEEVLTAME 136 (271)
Q Consensus 116 i~~~~~~g~~~~a~~~~~~m~ 136 (271)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.14 E-value=13 Score=26.70 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=25.9
Q ss_pred ccCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 121 RLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
..++.+++..+++.|.--. -.+...++.. ..+...|++++|.++|+++...
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666655421 0112223322 2345566666666666666654
No 331
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.13 E-value=17 Score=27.81 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=58.5
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHH
Q 036275 117 NLYGRLGQFEKMEEVLTAMEKGSYAAD-----ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYS 190 (271)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~ 190 (271)
+-+.+.|++++|..-|.+..+. .++. ...|..-..++.+.+.++.|++--....+.+ |+ ......-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 3466788888888888888776 2332 2345555667778888888877777766653 32 122222234677
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 036275 191 RKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~ 208 (271)
+...+++|+.=|+.+++.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 777888888888888776
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.90 E-value=21 Score=28.89 Aligned_cols=183 Identities=9% Similarity=0.032 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------CC-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT------GN-----VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124 (271)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~------~~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 124 (271)
+.-.+..++..+...+....+|...+.++... |. ..+|+++|.-+.+...+ ..+-..++.++....+
T Consensus 104 ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D 181 (361)
T COG3947 104 EKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAIEALWPEKD 181 (361)
T ss_pred HHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHHHHHccccc
Confidence 33334444444444444566777777776621 11 35778888777665222 2333456677777777
Q ss_pred HhHHHHHHHHHH-------h-------------------CCCCCChhhHHHHHHHHHcC-CCHHHHHHHHHhchhCCCCC
Q 036275 125 FEKMEEVLTAME-------K-------------------GSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRLKP 177 (271)
Q Consensus 125 ~~~a~~~~~~m~-------~-------------------~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~ 177 (271)
..+|...+.... . .+..-|+.-|-..+....+- -.++++.++....+.. .-|
T Consensus 182 ~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgd-yl~ 260 (361)
T COG3947 182 EKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGD-YLP 260 (361)
T ss_pred hhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCC
Confidence 766665543221 1 12234555555555544332 3356666665554211 111
Q ss_pred -----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275 178 -----------------DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240 (271)
Q Consensus 178 -----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 240 (271)
-..+++...+.|..+|.+.+|.++-+..+... +.+...+..+++.+...||--.+..-++++
T Consensus 261 e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 261 EADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 11234455578899999999999999988875 778888999999999999988888877776
Q ss_pred Hh
Q 036275 241 HK 242 (271)
Q Consensus 241 ~~ 242 (271)
.+
T Consensus 340 a~ 341 (361)
T COG3947 340 AE 341 (361)
T ss_pred HH
Confidence 43
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.77 E-value=45 Score=32.50 Aligned_cols=145 Identities=13% Similarity=0.162 Sum_probs=77.2
Q ss_pred hcCChHHHHHHHHHHHHC-----CCCCCH--HHHHHHHHHHHccC--CHhHHHHHHHHH------HhCCCCCChhhHHHH
Q 036275 86 KTGNVAKCEGVINQMHKS-----GLKPDT--FVINSMLNLYGRLG--QFEKMEEVLTAM------EKGSYAADISTYNIL 150 (271)
Q Consensus 86 ~~~~~~~a~~~~~~m~~~-----~~~~~~--~~~~~li~~~~~~g--~~~~a~~~~~~m------~~~~~~~~~~~~~~l 150 (271)
.+.+..+-+-+++++++. .+..|. .-|...+......| .+++++.+.++= ..- +.|+...+..+
T Consensus 863 SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~l-y~~~~e~~k~i 941 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALAL-YKPDSEKQKVI 941 (1265)
T ss_pred hccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhe-eccCHHHHHHH
Confidence 456666666666666632 112222 12444444444444 455555443321 111 24555544444
Q ss_pred H----HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 036275 151 I----NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT--AKVLISAC 224 (271)
Q Consensus 151 i----~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~ 224 (271)
. +-+...+.+++|--+|+..-+ ....+.+|...|+|.+|+.+..++.... +... -..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHH
Confidence 4 444456667777666664432 2345677778888888888777665321 2211 14566667
Q ss_pred hccCcHHHHHHHHHHHHhc
Q 036275 225 SSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 225 ~~~g~~~~a~~~~~~~~~~ 243 (271)
...++.-+|-++..+...+
T Consensus 1010 ~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHcccchhHHHHHHHHhcC
Confidence 7777777777776665433
No 334
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=83.66 E-value=5.9 Score=22.24 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=20.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 222 (271)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666666666666666666666665554
No 335
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=83.31 E-value=11 Score=27.00 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=29.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 63 EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 63 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
..+++.|++++.. -..++..+.+.++.-.|.++|+++.+.+...+..|--.-++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344455544443 22445555555555555566666655555444444333344444444
No 336
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=83.30 E-value=3.8 Score=34.67 Aligned_cols=131 Identities=11% Similarity=-0.029 Sum_probs=93.8
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHH----hCCCC-CChhhHHHHHHHHHcCCCHHHHHHHHHhch----hCC-CCCCHHH
Q 036275 112 INSMLNLYGRLGQFEKMEEVLTAME----KGSYA-ADISTYNILINIYGRGGFIEKMEGLFQSLP----AKR-LKPDVVT 181 (271)
Q Consensus 112 ~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g-~~~~~~~ 181 (271)
|..|.+.|.-.|+++.|+...+.-. +-|-. .....+..|.+++.-.|+++.|.+.++... +.| .......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 5556666666789999987765432 22322 234678889999999999999999988643 222 1234467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEEMID----A-GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
...|..+|.-..++.+|+..+.+.+. . ...-....+.+|..++...|..++|..+.+.-.+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 78888999888999999888766442 1 1223567888999999999999999988776543
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.84 E-value=4.4 Score=20.21 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555443
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.65 E-value=17 Score=33.44 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.2
Q ss_pred HHHHHHHhhccccccchhhhh
Q 036275 249 PIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 249 ~~~~~~~~~~G~~~~a~~~~~ 269 (271)
..+..+|...|++.+|+..|.
T Consensus 509 e~La~LYl~d~~Y~~Al~~yl 529 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYL 529 (846)
T ss_pred HHHHHHHHHccChHHHHHHHH
Confidence 337788888888888888764
No 339
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=82.57 E-value=26 Score=28.87 Aligned_cols=21 Identities=14% Similarity=-0.043 Sum_probs=9.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 036275 148 NILINIYGRGGFIEKMEGLFQ 168 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~ 168 (271)
-.....||+-|+.+.|++.+.
T Consensus 108 ~~kaeYycqigDkena~~~~~ 128 (393)
T KOG0687|consen 108 LRKAEYYCQIGDKENALEALR 128 (393)
T ss_pred HHHHHHHHHhccHHHHHHHHH
Confidence 334444444444444444443
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.40 E-value=4.2 Score=22.38 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=8.1
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 036275 187 AAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~ 206 (271)
++|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33444444444444444433
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.78 E-value=20 Score=27.11 Aligned_cols=130 Identities=6% Similarity=-0.040 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHH--HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 036275 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN--ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 185 (271)
-...|..++...- .+.. +.....+.+....-.....++. .+...+...|++++|+.-++..... |....+..+
T Consensus 53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l 127 (207)
T COG2976 53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence 3445777776654 3444 5556666666652111112222 3356788999999999999987653 334444444
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 186 -----LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 186 -----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
.+.....|.+++|+.+++...+.+.. ......--+.+...|+-++|+.-|++..+.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 45677899999999999988766532 2233344566889999999999999988775
No 342
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.54 E-value=26 Score=29.72 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=45.7
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHHHHC
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMK--SHMLLLTAYSK--TGNVAKCEGVINQMHKS 103 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~~~~~~a~~~~~~m~~~ 103 (271)
+......| .+++..|.++|+.+..+ ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67778888 99999999999999987 665554 55566666654 45678899999887765
No 343
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.16 E-value=25 Score=27.77 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=84.9
Q ss_pred hcCHHHHHHHHHHHH----HcCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMK----RLGITPTMKSHMLLLT--AYSKTGNVAKCEGVINQMHKS---G--LKPDTFVINSMLNLYG 120 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~li~~~~ 120 (271)
...+.+|..++++.. +.| .|++... .|-. -..+..++++|+++|++.... + ...-...+..+-+.+.
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~G-spdtAAm-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECG-SPDTAAM-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhC-CcchHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 445555666665542 334 3443322 1111 123445677777777765432 1 1112234566667777
Q ss_pred ccCCHhHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC---CCCHHHHHHHHHHHHhc
Q 036275 121 RLGQFEKMEEVLTAMEKG----SYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRL---KPDVVTWTSRLAAYSRK 192 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~ 192 (271)
+...+++|-..+..-... .--++ -..|-..|-.+.-..++..|.+.++.--+.+- .-+..+...|+.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 777787776665433211 11122 23456667777788899999999998544321 22456788888886 55
Q ss_pred CCHHHHHHHHH
Q 036275 193 KLYRRCLEIFE 203 (271)
Q Consensus 193 g~~~~a~~~~~ 203 (271)
|+.+++.+++.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 88888777654
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.15 E-value=22 Score=27.07 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=61.7
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh---CCCCCCHHHHHHHHHHHHhcCCH
Q 036275 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA---KRLKPDVVTWTSRLAAYSRKKLY 195 (271)
Q Consensus 119 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~ 195 (271)
..+.|+ +.|.+.|-.+...+.-.++.....|...|. ..+.+++..++.+..+ .+-.+|+..+..|...+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445565 678889988988876666666666655555 7889999999998764 23377899999999999999999
Q ss_pred HHHH
Q 036275 196 RRCL 199 (271)
Q Consensus 196 ~~a~ 199 (271)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9886
No 345
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=80.99 E-value=14 Score=24.86 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHH
Q 036275 211 YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN 253 (271)
Q Consensus 211 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 253 (271)
.||...|..|- -.+.|..+++...+.++..++.+....+..
T Consensus 68 ~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g~~~~q~Fa~ 108 (116)
T PF09477_consen 68 YPDLEPWAALC--AWKLGLASALESRLTRLASSGSPELQAFAA 108 (116)
T ss_dssp -GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred CccHHHHHHHH--HHhhccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34444443332 224445555555555554444444444433
No 346
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=80.98 E-value=7.5 Score=21.81 Aligned_cols=25 Identities=8% Similarity=0.288 Sum_probs=9.8
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTY 147 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~ 147 (271)
|-.+++..++++|.+.|+..+...+
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHH
Confidence 3333344444444444433333333
No 347
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=80.60 E-value=11 Score=26.99 Aligned_cols=58 Identities=9% Similarity=0.034 Sum_probs=25.7
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 036275 133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191 (271)
Q Consensus 133 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 191 (271)
+.+.+.|+.++..= ..++..+...++.-.|.++++++.+.+...+..|-..-+..+..
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 33444444444331 23444444444445555555555554444444443333333333
No 348
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.21 E-value=14 Score=30.55 Aligned_cols=95 Identities=14% Similarity=0.023 Sum_probs=61.7
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH
Q 036275 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195 (271)
Q Consensus 116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 195 (271)
.+-|.+.|.+++|++.|....... +-+.+++..-..+|.+...+..|+.=-......+ ..-...|+.-..+--..|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 345778899999999998776652 3388888888999999888887766555544331 01123444444554555666
Q ss_pred HHHHHHHHHHHHCCCCCCH
Q 036275 196 RRCLEIFEEMIDAGCYPDG 214 (271)
Q Consensus 196 ~~a~~~~~~m~~~~~~p~~ 214 (271)
.+|.+=++..++. .|+.
T Consensus 182 ~EAKkD~E~vL~L--EP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLAL--EPKN 198 (536)
T ss_pred HHHHHhHHHHHhh--Cccc
Confidence 6666666666554 5654
No 349
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.11 E-value=32 Score=28.37 Aligned_cols=158 Identities=10% Similarity=0.059 Sum_probs=86.8
Q ss_pred hcCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-----c
Q 036275 52 SIYFSDAHAVFEEMKRLGI----TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR-----L 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~ 122 (271)
.++++++....+.....-. ......|........+...+.+..++.+-..... .+......++..... .
T Consensus 42 ~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~ 119 (352)
T PF02259_consen 42 QGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQ 119 (352)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhc
Confidence 8999998888887765411 1123344444444444444444444433332211 012222233332221 2
Q ss_pred CCHhHHHHHH---HHHHh--CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcCC
Q 036275 123 GQFEKMEEVL---TAMEK--GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP---DVVTWTSRLAAYSRKKL 194 (271)
Q Consensus 123 g~~~~a~~~~---~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~ 194 (271)
.+++.-..++ ..+.+ ........+|..++..+.+.|+++.|...+.++...+... .+...-.-.+..-..|+
T Consensus 120 ~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~ 199 (352)
T PF02259_consen 120 DDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE 199 (352)
T ss_pred cchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC
Confidence 2232222222 22222 1122446788889999999999999999999888753211 33445555666677888
Q ss_pred HHHHHHHHHHHHHCCCC
Q 036275 195 YRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 195 ~~~a~~~~~~m~~~~~~ 211 (271)
..+|...++......+.
T Consensus 200 ~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 200 QEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 89999999888774333
No 350
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.03 E-value=12 Score=28.14 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 176 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
.|++.+|..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555555444
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.55 E-value=32 Score=27.96 Aligned_cols=160 Identities=11% Similarity=0.036 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-------HHH-------------------CCCCCC
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ-------MHK-------------------SGLKPD 108 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------m~~-------------------~~~~~~ 108 (271)
..+|+++|..+..+..+ +.+-..++.++....+..+|...+.. +.. .++..|
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 45788999888776322 23344677777777777776655532 221 124556
Q ss_pred HHHHHHHHHHHHcc-CCHhHHHHHHHHHHhCCCCC-----------------ChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 109 TFVINSMLNLYGRL-GQFEKMEEVLTAMEKGSYAA-----------------DISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 109 ~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
..-|-..++..-.. -..+++.++....+.. +-| -..+++.....|..+|.+.+|.++.++.
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 66677766655333 3456666666655332 111 1233455667899999999999999998
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 036275 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-----DAGCYPDGGTAK 218 (271)
Q Consensus 171 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~ 218 (271)
.... +.+...+-.+++.+...||--.|.+-++.+. +.|+..+...+.
T Consensus 306 ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 306 LTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred hhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 8763 4577888999999999999777777766653 357776665543
No 352
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.54 E-value=14 Score=23.83 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 036275 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163 (271)
Q Consensus 95 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 163 (271)
++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +| +..|...+.++-..|.-+-|
T Consensus 23 ~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 445555555532 33333333333234455555555555554 32 33445555555555544433
No 353
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.24 E-value=16 Score=34.50 Aligned_cols=116 Identities=12% Similarity=0.067 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCH--hHHHHHHHHHHhCCCCCChhhHH--
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFVINSMLNLYGRLGQF--EKMEEVLTAMEKGSYAADISTYN-- 148 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~-- 148 (271)
-|..|+..|...|..++|+++|.+..... -..-..-+.-+++...+.+.. +.+.++-+...+..-......+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 37778888888888888888888776632 111112233466666565554 55555555554431111111111
Q ss_pred ----------HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 036275 149 ----------ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191 (271)
Q Consensus 149 ----------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 191 (271)
.-+-.|......+-+...++.+....-.++....+.++.-|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233455666677777777777665545566666667666654
No 354
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=79.20 E-value=14 Score=31.05 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 92 KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 92 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
+|..+++...... +-+...--.+++.|...|-.+.|.+.|..+.-+
T Consensus 201 ~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK 246 (365)
T PF09797_consen 201 QAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIK 246 (365)
T ss_pred HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChH
Confidence 4444555554442 223344444566677777777777776665433
No 355
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=78.95 E-value=25 Score=26.37 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHCCCCCCH--HH-----HHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 90 VAKCEGVINQMHKSGLKPDT--FV-----INSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 90 ~~~a~~~~~~m~~~~~~~~~--~~-----~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
++.|+.+|+.+.+.-..|.. .. -...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 34566666666554322211 11 11223345556666666666655544
No 356
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=78.87 E-value=2.2 Score=29.87 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223 (271)
Q Consensus 192 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 223 (271)
.|.-..|..+|+.|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34445666667777766666664 5555544
No 357
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.83 E-value=33 Score=27.67 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-
Q 036275 77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG- 155 (271)
Q Consensus 77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~- 155 (271)
...=|.++++.++|.+++...-+.-+.--+........-|-.|.+.+++..+.++-....+..-.-+...|.+++..|.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3456788999999999988776655442233444556667778999999999998887776533344555777776654
Q ss_pred ----cCCCHHHHHHHH
Q 036275 156 ----RGGFIEKMEGLF 167 (271)
Q Consensus 156 ----~~g~~~~a~~~~ 167 (271)
=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 579999999988
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.63 E-value=33 Score=27.58 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=72.8
Q ss_pred hcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHccC
Q 036275 52 SIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKS---GL--KPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~g 123 (271)
..++++|+.-|.+..+....-. -.....++....+.+++++.++.|.+|... .+ .-+....|++++.-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4466666666666655421222 223334556666666666666666665421 11 223344555555555555
Q ss_pred CHhHHHHHHHHHH----hCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC----CCCCH-------HHHHHHHH
Q 036275 124 QFEKMEEVLTAME----KGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKR----LKPDV-------VTWTSRLA 187 (271)
Q Consensus 124 ~~~~a~~~~~~m~----~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~-------~~~~~li~ 187 (271)
+.+....+++.-. +..-.. =-.|-.-|...|...|++.+..+++.++.+.- -.-|. ..|..=|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 5554444443322 111000 00122345555566666666666666554321 11111 23444455
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 036275 188 AYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~ 206 (271)
.|....+-.+...++++..
T Consensus 200 mYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhcccHHHHHHHHHHH
Confidence 5555555555555555543
No 359
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.21 E-value=1.6 Score=35.71 Aligned_cols=120 Identities=16% Similarity=0.068 Sum_probs=84.0
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~ 121 (271)
=...+.++ .|.++.|++.|...+..+ ++....|.--.+++.+.++...|+.=++...+. .||. .-|-.--.+-..
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERL 194 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHH
Confidence 44567777 999999999999998887 677888888888889999999998888877776 3343 234444455566
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQ 168 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 168 (271)
.|++++|...+....+.++.+....+ +=...-..+..++-...++
T Consensus 195 lg~~e~aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~e 239 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYE 239 (377)
T ss_pred hhchHHHHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHH
Confidence 79999999999999888775554433 3333334444433333333
No 360
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.57 E-value=39 Score=28.44 Aligned_cols=166 Identities=14% Similarity=0.012 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC---C--CChh
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKP---DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY---A--ADIS 145 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~--~~~~ 145 (271)
..|-.+.+++-+..++.+++.+-+.-... |..| .-...-++-.+....+.++++.+.|+...+.-. . ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34445555555555556665554433322 2222 112344567778888889999999987764311 1 2346
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhchh----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHH----HCCCCC
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSLPA----KRLKPDVVTWT-----SRLAAYSRKKLYRRCLEIFEEMI----DAGCYP 212 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~----~~~~~p 212 (271)
+|-.|...|.+..++++|.-+.....+ .++.--..-|. .|.-++...|..-.|.+.-++.. +.|-++
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 788899999999999998777665432 22221112233 33445666777777777666543 344222
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275 213 D-GGTAKVLISACSSEDQIEQVTTLVRTM 240 (271)
Q Consensus 213 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 240 (271)
. ......+.+.|...|+.+.|..-|+..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2 233445667788899999888877764
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.57 E-value=36 Score=27.45 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=9.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 036275 148 NILINIYGRGGFIEKMEGLFQ 168 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~ 168 (271)
..-|-.|.+.|+...+.++-.
T Consensus 122 eLCILLysKv~Ep~amlev~~ 142 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVAS 142 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHH
Confidence 333444444444444444433
No 362
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=77.45 E-value=7.3 Score=31.52 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=22.9
Q ss_pred CCCHHH-HHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 036275 106 KPDTFV-INSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141 (271)
Q Consensus 106 ~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 141 (271)
.||..+ |+.-|+...+.||.++|+.++++.++.|+.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344444 456677777777777777777777766653
No 363
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=77.37 E-value=56 Score=30.21 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=20.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 217 AKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 217 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
|..+.+++....+.+.+.++++++.++.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e~ 240 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKED 240 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhcc
Confidence 5566777777788888888888876643
No 364
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.35 E-value=15 Score=30.47 Aligned_cols=87 Identities=20% Similarity=0.093 Sum_probs=55.4
Q ss_pred HHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036275 151 INIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229 (271)
Q Consensus 151 i~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 229 (271)
.+-|.++|.+++|++.+..-... .| |++++..-..+|.+...+..|..=....+..+ ..-...|..-..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 35688999999999999986654 45 88999999999999998887776555554432 1112233333333333444
Q ss_pred HHHHHHHHHHH
Q 036275 230 IEQVTTLVRTM 240 (271)
Q Consensus 230 ~~~a~~~~~~~ 240 (271)
..+|.+=++..
T Consensus 181 ~~EAKkD~E~v 191 (536)
T KOG4648|consen 181 NMEAKKDCETV 191 (536)
T ss_pred HHHHHHhHHHH
Confidence 44444444433
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.14 E-value=13 Score=27.98 Aligned_cols=55 Identities=13% Similarity=-0.053 Sum_probs=37.9
Q ss_pred HHccCCHhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 119 YGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 119 ~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
.....+.+......+...+. ...|+..+|..++.++...|+.++|.+...++...
T Consensus 118 ~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 118 ARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33555555444444443332 23688888888899999999999998888887764
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.99 E-value=12 Score=23.70 Aligned_cols=16 Identities=6% Similarity=-0.101 Sum_probs=7.7
Q ss_pred hcCHHHHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKR 67 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~ 67 (271)
.++.+.|+..|....+
T Consensus 19 ~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 19 QNETQQALQKWRKALE 34 (80)
T ss_pred cchHHHHHHHHHHHHh
Confidence 4444555555544443
No 367
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.63 E-value=16 Score=27.20 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----C-------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG----N-------VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
.+++|+.-|++....+ |-...++..+..++...+ + +++|...|++.... +|+..+|+.-+....
T Consensus 50 miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 50 MIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 3566666677766654 345677878888877553 2 44555555555554 899999999998863
Q ss_pred CCHhHHHHHHHHHHhCCC
Q 036275 123 GQFEKMEEVLTAMEKGSY 140 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~ 140 (271)
+|-++..++.+.+.
T Consensus 125 ----kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 ----KAPELHMEIHKQGL 138 (186)
T ss_dssp ----THHHHHHHHHHSSS
T ss_pred ----hhHHHHHHHHHHHh
Confidence 46667777766654
No 368
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=76.63 E-value=7 Score=23.32 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 213 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
|-.-.-.+|.++...|++++|.++++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444455566666666666666666666543
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.56 E-value=10 Score=23.88 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=19.1
Q ss_pred cCCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 036275 156 RGGFIEKMEGLFQSLPAKRLKPD--VVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 156 ~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~ 200 (271)
...+.++|+..|....+.-..+. -.++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554443321111 1244444555555555544443
No 370
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.39 E-value=40 Score=27.37 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=20.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHccCCHhHH
Q 036275 84 YSKTGNVAKCEGVINQMHKSGLKPDTFV-------INSMLNLYGRLGQFEKM 128 (271)
Q Consensus 84 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~li~~~~~~g~~~~a 128 (271)
..+.++.++|+.+|.++...|+..|..+ ...+...|...|+....
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 3444455555555555555544443322 23344455555554433
No 371
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.32 E-value=22 Score=32.01 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
...-.-++..|.+.|-.+.|.++.+.+-..-+ ...-|...+..+.+.|+...+..+.+.+.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445555556666655555555554433211 22334555555555555555444444443
No 372
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=75.19 E-value=3 Score=29.24 Aligned_cols=29 Identities=34% Similarity=0.267 Sum_probs=17.6
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036275 53 IYFSDAHAVFEEMKRLGITPTMKSHMLLLTA 83 (271)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 83 (271)
|.-.+|.++|.+|.++|-+||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4445566777777777766653 5555544
No 373
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=74.20 E-value=46 Score=27.05 Aligned_cols=107 Identities=11% Similarity=0.104 Sum_probs=49.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 036275 82 TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161 (271)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 161 (271)
....+.++.....+.+..+. ....-...++.....|++.+|++++.+..+. . .+...|+.+=.. ..+++
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l-~~l~~~~c~~~L---~~~L~ 174 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-L-EELKGYSCVRHL---SSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-H-HhcccchHHHHH---hHHHH
Confidence 33334444444444444443 2223344566666777777777777766543 1 011111111111 11122
Q ss_pred HHHHHHHhchhC-----CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036275 162 KMEGLFQSLPAK-----RLKPDVVTWTSRLAAYSRKKLYRRCL 199 (271)
Q Consensus 162 ~a~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~a~ 199 (271)
+.....+++... =...|+..|..++.||.-.|+...+.
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 222222222111 01357777888888887777665544
No 374
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.89 E-value=8.1 Score=23.04 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
.--.+|.++...|++++|.+.++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445666666666666666665554
No 375
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.30 E-value=74 Score=29.03 Aligned_cols=185 Identities=14% Similarity=0.132 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHH-cCCCCC--HHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHccCCHh
Q 036275 56 SDAHAVFEEMKR-LGITPT--MKSHMLLLTAYS-KTGNVAKCEGVINQMHKSGLKPDTF-----VINSMLNLYGRLGQFE 126 (271)
Q Consensus 56 ~~A~~~~~~~~~-~~~~~~--~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~ 126 (271)
..|++.++-+.+ ...+|. +.++-.+...+. ...++++|+..+.+.....-.++-. .-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 456777776663 334443 344555666666 6688999999998775543232221 1234567777776655
Q ss_pred HHHHHHHHHHhC----CCCCChhhHHHH-HHHHHcCCCHHHHHHHHHhchhCC---CCCCHHHHHHHHHHHH--hcCCHH
Q 036275 127 KMEEVLTAMEKG----SYAADISTYNIL-INIYGRGGFIEKMEGLFQSLPAKR---LKPDVVTWTSRLAAYS--RKKLYR 196 (271)
Q Consensus 127 ~a~~~~~~m~~~----~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~ 196 (271)
|...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|...++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888776543 222223444444 333334489999999998876432 2333445555555544 456567
Q ss_pred HHHHHHHHHHHCC---------CCCCHHHHHHHHHHH--hccCcHHHHHHHHHHHH
Q 036275 197 RCLEIFEEMIDAG---------CYPDGGTAKVLISAC--SSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 197 ~a~~~~~~m~~~~---------~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 241 (271)
++.+.++++.... ..|-..++..+++.+ ...|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777663311 134566777777764 46788888887777664
No 376
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.93 E-value=13 Score=30.20 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=28.7
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036275 176 KPDVVT-WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218 (271)
Q Consensus 176 ~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 218 (271)
.|+..+ |+..|+...+.||+++|++++++..+.|+.--..+|.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345443 4677777788888888888888877777654444443
No 377
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.47 E-value=56 Score=34.44 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=75.7
Q ss_pred HHHHhcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275 82 TAYSKTGNVAKCEGVINQM----HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157 (271)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 157 (271)
.+-.+.+.+.+|...+++- ++. .....-|..+...|+..+++|++..+...-.. +... ..-|......
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHEAS 1462 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHHhh
Confidence 3444556677777777663 211 11223344444477777777777766654111 1222 2344556667
Q ss_pred CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHH
Q 036275 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG-TAKVLISACSSEDQIEQVTTL 236 (271)
Q Consensus 158 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~ 236 (271)
|++..|...|+++.+.+ ++...+++-++..-...|.++.+....+-..... .+... .++.=+.+--+.+++|.....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 77777888887777663 2225566666666666666666555444433321 11111 122223334555556555544
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.89 E-value=40 Score=25.33 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCCC--CHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275 55 FSDAHAVFEEMKRLGITP--TMKSHM-----LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~--~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 124 (271)
.+.|+.+|+.+.+.--.| -...-. ..+..|.+.|.+++|.+++++..+ .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 677999998887654232 112222 344568899999999999999987 3455555555555555443
No 379
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=71.77 E-value=48 Score=30.35 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=52.4
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHcCCCHH------HHHHHHHhchhCCCCCCHHHHHHH
Q 036275 114 SMLNLYGRLGQFEKMEEVLTAMEKG--SYAADISTYNILINIYGRGGFIE------KMEGLFQSLPAKRLKPDVVTWTSR 185 (271)
Q Consensus 114 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~~~~~~~~~l 185 (271)
+|+.+|...|++..+.++++..... |-..-...+|..|+.+.+.|.++ .|.+.++...- .-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l---n~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL---NGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc---CCcchHHHHH
Confidence 7888888888888888888887654 22234566788888888888753 45555555553 3477788888
Q ss_pred HHHHHh
Q 036275 186 LAAYSR 191 (271)
Q Consensus 186 i~~~~~ 191 (271)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 777554
No 380
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=70.81 E-value=21 Score=23.95 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCC
Q 036275 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK--LYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~ 211 (271)
..++.-|...|+.++|...+.++... .-.......++..+...+ .-+.+..++..+...+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45667777778888888888886432 112334444455444442 223456666777766644
No 381
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.76 E-value=79 Score=27.87 Aligned_cols=92 Identities=9% Similarity=0.083 Sum_probs=62.7
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHhcccchhHHHH
Q 036275 176 KPDVVTW-TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS--SEDQIEQVTTLVRTMHKDMKTALPIYF 252 (271)
Q Consensus 176 ~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~ 252 (271)
.|+..|+ +.+++-+-+.|-.++|..++..+.... +|+...|..+|+.-. ..-++.-++.+++.+.......+...+
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~ 534 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWM 534 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHH
Confidence 3444444 566777778888899999999988864 677888888877522 223478888999988876655555554
Q ss_pred HHH---hhccccccchhhh
Q 036275 253 NLY---GEKGVARSNLGQY 268 (271)
Q Consensus 253 ~~~---~~~G~~~~a~~~~ 268 (271)
+.| ...|..+.+-+.|
T Consensus 535 ~y~~~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIY 553 (568)
T ss_pred HHHHhhccCCCcccccHHH
Confidence 443 4577776665443
No 382
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=69.56 E-value=62 Score=26.58 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhccCcHHHH
Q 036275 215 GTAKVLISACSSEDQIEQV 233 (271)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~a 233 (271)
.+|.-|+.+++..|+.+..
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3577777777777776643
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.30 E-value=10 Score=17.51 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 036275 78 MLLLTAYSKTGNVAKCEGVINQMH 101 (271)
Q Consensus 78 ~~li~~~~~~~~~~~a~~~~~~m~ 101 (271)
..+...+...++++.|...+++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444444433
No 384
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.27 E-value=59 Score=26.21 Aligned_cols=161 Identities=13% Similarity=0.163 Sum_probs=104.3
Q ss_pred hHHHHHH--hcCHHHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCCCHHHH
Q 036275 45 NLFVFIF--SIYFSDAHAVFEEMKR---LGIT--PTMKSHMLLLTAYSKTGNVAKCEGVINQMHK----S-GLKPDTFVI 112 (271)
Q Consensus 45 ~~ll~~~--~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~~~~~ 112 (271)
..+|..+ .|++++....|.++.. +.+. .+..+.|+++...+...+.+...++|+.-.+ . +-..--.|-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 3456665 8999999999888753 2222 3566788888888888888877777754432 2 111112344
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhC-----CC------CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC-CCCCCHH
Q 036275 113 NSMLNLYGRLGQFEKMEEVLTAMEKG-----SY------AADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVV 180 (271)
Q Consensus 113 ~~li~~~~~~g~~~~a~~~~~~m~~~-----~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~ 180 (271)
+.|...|...+++.+..+++.++..+ |- ..-...|..=|..|....+-.+-..++++.... .-.|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 56788888999999999999988653 10 112456777788888888888888888876542 2345554
Q ss_pred HHHHHHHH-----HHhcCCHHHHHH-HHHHHH
Q 036275 181 TWTSRLAA-----YSRKKLYRRCLE-IFEEMI 206 (271)
Q Consensus 181 ~~~~li~~-----~~~~g~~~~a~~-~~~~m~ 206 (271)
... .|+- +.+.|++++|-. +|+...
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 433 3333 456788887754 333333
No 385
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.25 E-value=72 Score=27.26 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC---------CCCCC
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG---------SYAAD 143 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~~~ 143 (271)
..+.-+...|...|+++.|++.|-+.+.... +-.+..|-.+|..-.-.|+|..+..+..+.... .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4566788889999999999999998766532 223455777788888889998888777766553 12333
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHhchhCC------CCCCHHHHHHHHHHHHhcCCHHHHHH-----HHHHHHHCCCCC
Q 036275 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKR------LKPDVVTWTSRLAAYSRKKLYRRCLE-----IFEEMIDAGCYP 212 (271)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~-----~~~~m~~~~~~p 212 (271)
...+..+.....+ ++..|.+.|-...... +.|+.++....+.+..--++-+--.. .|+.+.+. .|
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel--~P 306 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL--EP 306 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc--Ch
Confidence 4444445444444 6666666655443211 34555555555555544433332222 23333332 33
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 213 DGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 213 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
. ....+..-|. +++....++++++..+
T Consensus 307 q--lr~il~~fy~--sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 307 Q--LREILFKFYS--SKYASCLELLREIKPR 333 (466)
T ss_pred H--HHHHHHHHhh--hhHHHHHHHHHHhccc
Confidence 3 3333333332 4677777777777654
No 386
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.20 E-value=92 Score=28.43 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=92.7
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHH-----HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHc
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKS-----HMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPDTFVINSM-LNLYGR 121 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l-i~~~~~ 121 (271)
+.++++|+..+.+....--.++..- -..++..+.+.+... |...+++..+. +..+-...|..+ +..+..
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence 8899999999998754432233221 224556666666555 98888887654 222333444444 434444
Q ss_pred cCCHhHHHHHHHHHHhCC---CCCChhhHHHHHHHHH--cCCCHHHHHHHHHhchhCC---------CCCCHHHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGS---YAADISTYNILINIYG--RGGFIEKMEGLFQSLPAKR---------LKPDVVTWTSRLA 187 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~~~~~~~~~li~ 187 (271)
.++...|.+.++.+...- ..|...++-.++.+.. +.+..+++.+.++++.... -.|...+|..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 489999999998876532 2344555555555543 4555666777776653211 2345667777776
Q ss_pred HH--HhcCCHHHHHHHHHHHH
Q 036275 188 AY--SRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 188 ~~--~~~g~~~~a~~~~~~m~ 206 (271)
.+ ...|+++.+...++++.
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 55 46788777766665543
No 387
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=68.57 E-value=23 Score=21.17 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=6.3
Q ss_pred hcCHHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEM 65 (271)
Q Consensus 52 ~g~~~~A~~~~~~~ 65 (271)
.|++=+|.++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44444454444444
No 388
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=68.50 E-value=33 Score=25.28 Aligned_cols=36 Identities=11% Similarity=-0.107 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 158 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
++.-.|.++++.+.+.+..++..|...-|..+.+.|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334444444444444444444444444444444333
No 389
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=68.42 E-value=58 Score=27.64 Aligned_cols=52 Identities=12% Similarity=-0.125 Sum_probs=26.8
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChhh----HHHHHHHHH--cCCCHHHHHHHHHh
Q 036275 118 LYGRLGQFEKMEEVLTAMEKGSYAADIST----YNILINIYG--RGGFIEKMEGLFQS 169 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~--~~g~~~~a~~~~~~ 169 (271)
.+.+.+++..|.++|+++.+...+++... |..+..+|. ..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 44556666677777776666644333322 223333332 23455666666654
No 390
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.74 E-value=52 Score=28.06 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=20.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCcHHHHHHHHH
Q 036275 190 SRKKLYRRCLEIFEEMIDAGCYPDGGT---AKVLISACSSEDQIEQVTTLVR 238 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~ 238 (271)
+..|+.+ +.+.+.+.|..|+... ....+......|+.+-+.-+++
T Consensus 176 ~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 176 MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 3445543 3444555555554322 1133333345566554444443
No 391
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.43 E-value=60 Score=25.60 Aligned_cols=17 Identities=18% Similarity=0.593 Sum_probs=7.8
Q ss_pred hcCCHHHHHHHHHHHHH
Q 036275 191 RKKLYRRCLEIFEEMID 207 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~ 207 (271)
..+++.+|..+|++.-.
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555444433
No 392
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=67.05 E-value=49 Score=30.25 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=55.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHhH------HHHHHHHHHhCCCCCChhhHHHH
Q 036275 79 LLLTAYSKTGNVAKCEGVINQMHKS--GLKPDTFVINSMLNLYGRLGQFEK------MEEVLTAMEKGSYAADISTYNIL 150 (271)
Q Consensus 79 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~~~~~~~~~~~~l 150 (271)
+|+.+|...|++-.+.++++.+... |-+.-...+|..|+...+.|.++- +.+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 8999999999999999999998765 334445678889999999997652 33333333 344578888888
Q ss_pred HHHHHc
Q 036275 151 INIYGR 156 (271)
Q Consensus 151 i~~~~~ 156 (271)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766544
No 393
>PRK09462 fur ferric uptake regulator; Provisional
Probab=66.60 E-value=43 Score=23.97 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=28.1
Q ss_pred HHhCCCCCChhhHHHHHHHHHcC-CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 036275 135 MEKGSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194 (271)
Q Consensus 135 m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 194 (271)
+.+.|+..+..= ..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 344454444332 2333444332 3455566666666555544455555555555554443
No 394
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=66.39 E-value=70 Score=26.06 Aligned_cols=118 Identities=8% Similarity=0.051 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHh----CCCCCChhhHHH-HHHHHHcCCCHHHHHHHHHhchhCCCCCCH----
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEK----GSYAADISTYNI-LINIYGRGGFIEKMEGLFQSLPAKRLKPDV---- 179 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---- 179 (271)
...+..+...|++.++.+.+.+...+..+ .|.+.|+...-+ |.-.|....-.++.++..+.|.++|..-+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 34566666677777776666665544332 244444332221 112233333345566666666666543222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228 (271)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 228 (271)
.+|.-+.. ...+++.+|-.++......=-......|...++...-.|
T Consensus 195 K~Y~Gi~~--m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 195 KVYKGIFK--MMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHHH--HHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhh
Confidence 22322221 223456666666655543211222334555555444444
No 395
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=66.26 E-value=50 Score=24.33 Aligned_cols=56 Identities=9% Similarity=0.084 Sum_probs=25.4
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 67 RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 67 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
+.|+.++..-. .++..+....+.-.|.++++++.+.+..++..|-.-.|+.+...|
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 34444443322 333333334444455555555555554444444333444444444
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.19 E-value=36 Score=26.85 Aligned_cols=62 Identities=15% Similarity=-0.042 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhch----hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLP----AKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
...-.+..-|.+.|++++|.++|+.+. +.| ..+...+...+..++.+.|+.+....+.-++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 334467778888888888888888764 233 23445567777778888888888777655543
No 397
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=65.95 E-value=1e+02 Score=27.71 Aligned_cols=177 Identities=15% Similarity=0.078 Sum_probs=109.1
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLNLY 119 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~ 119 (271)
|+.-+.-- .|+++.+.-+|+...-- +..=...|--.+.-....|+.+.|..++....+-..+-++ ..+.+.+ .
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~ 376 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--E 376 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--H
Confidence 44444444 77777777777765321 1112344555555555668888888887776665444333 3333333 3
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcCCCHHHHH---HHHHhchhCCCCCCHHHHHHHHHH-----HH
Q 036275 120 GRLGQFEKMEEVLTAMEKGSYAADI-STYNILINIYGRGGFIEKME---GLFQSLPAKRLKPDVVTWTSRLAA-----YS 190 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~---~~~~~m~~~g~~~~~~~~~~li~~-----~~ 190 (271)
-..|+++.|..+++.+.+. . |+. ..-..-+....+.|+.+.+. +++........ +..+...+.-- +.
T Consensus 377 e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYK 452 (577)
T ss_pred HhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHH
Confidence 4568999999999998876 3 543 33344456677888888887 44444433221 22233333322 33
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 228 (271)
-.++.+.|..++.++.+. ++++...|..+++.+...+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 468889999999999886 4677788888888766554
No 398
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.94 E-value=37 Score=22.70 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=41.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHh
Q 036275 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYG 256 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 256 (271)
..+...|++++|..+.+.+ ..||...|..|.. .+.|..+++..-+.+|..++.+....+...+.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~p~lq~Faag~r 110 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASGDPRLQTFVAGMR 110 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3456677777777766554 3677777766543 35666677777777777777666666655543
No 399
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.53 E-value=60 Score=24.95 Aligned_cols=91 Identities=10% Similarity=0.037 Sum_probs=62.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275 82 TAYSKTGNVAKCEGVINQMHKSGLKPDT----FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157 (271)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 157 (271)
+-+.+.|++++|..-|...++....... ..|..-..++.+.+.++.|++--....+.+ +......---..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 4466788999999999888877433222 234455566778888888887777776653 22233333445678888
Q ss_pred CCHHHHHHHHHhchhC
Q 036275 158 GFIEKMEGLFQSLPAK 173 (271)
Q Consensus 158 g~~~~a~~~~~~m~~~ 173 (271)
..+++|+.=+..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8889998888888876
No 400
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=65.52 E-value=74 Score=25.97 Aligned_cols=111 Identities=12% Similarity=0.030 Sum_probs=59.0
Q ss_pred CChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 036275 88 GNVAKCEGVINQMHKSGL----KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163 (271)
Q Consensus 88 ~~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 163 (271)
+-.+.|.+.|++....+. ..++.....++....+.|+.+....+++..... ++...-..++.+.+...+.+..
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHH
Confidence 345666777776666421 345555566666666777655555555444443 3566667777777777777777
Q ss_pred HHHHHhchhCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 036275 164 EGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLY--RRCLEIFE 203 (271)
Q Consensus 164 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--~~a~~~~~ 203 (271)
.++++.+...+ +++.. ...++.++...+.. +.++..+.
T Consensus 221 ~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHH
Confidence 77777766643 33332 34444444423322 55555544
No 401
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=64.98 E-value=15 Score=31.92 Aligned_cols=179 Identities=14% Similarity=0.129 Sum_probs=90.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHccC-CHh
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV----INSMLNLYGRLG-QFE 126 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g-~~~ 126 (271)
..++++|++..++.++.+-+.+. |-...|.++|.++.++|+.||..| .+..+..|+-.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPISI-------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceEE-------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Confidence 66788888888888777633222 234567788999999999988765 334455677666 455
Q ss_pred HHHHHHHHHHhC---CCCCChhhHHHHHHHHHcCCC--HHHHHHHHHhchhCCCCCCHHHHHHHHHHH------------
Q 036275 127 KMEEVLTAMEKG---SYAADISTYNILINIYGRGGF--IEKMEGLFQSLPAKRLKPDVVTWTSRLAAY------------ 189 (271)
Q Consensus 127 ~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~------------ 189 (271)
++.++..+=.+. -...+..-.-..|..+.+.|- +|-.-.+..+....|+. +...|-..+.+|
T Consensus 274 e~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G~GPF 352 (545)
T TIGR01228 274 DADKLRQEEPEAYVKAAKQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRGKGPF 352 (545)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCcCCCc
Confidence 555443221100 000011111122233333332 22222233333333432 222222222222
Q ss_pred ---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--------------HhccCcHHHHHHHHHHHHhccc
Q 036275 190 ---SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA--------------CSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 190 ---~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--------------~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
+-+|+++...+.=+.+.+. +++|...+..+=.+ +...+.-.++-..|++|.+++.
T Consensus 353 RWvaLSGdpeDi~~TD~~~~e~-~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~Ge 424 (545)
T TIGR01228 353 RWVALSGDPADIYRTDAAVKEL-FPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSGE 424 (545)
T ss_pred eeEecCCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcCC
Confidence 3468877766655544443 44555443332221 3344566667778888877664
No 402
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=64.63 E-value=20 Score=21.65 Aligned_cols=49 Identities=6% Similarity=0.001 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036275 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226 (271)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 226 (271)
|....++.++...++-.-.+++...+.+....|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4455667777777776667777777777777663 455566555555544
No 403
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=64.61 E-value=79 Score=26.00 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHH-HHHHhCCCCCChh---
Q 036275 70 ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL-TAMEKGSYAADIS--- 145 (271)
Q Consensus 70 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~~~~~--- 145 (271)
.||+-.+-......+...|--+...-.-.++-. | .-...-..|..-..+...+++..... ++|++.++ |++.
T Consensus 219 fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ 294 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIG 294 (412)
T ss_pred cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEe
Confidence 366666666666666655533222211111110 0 01112223444444555667766655 56777765 4443
Q ss_pred -hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036275 146 -TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199 (271)
Q Consensus 146 -~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 199 (271)
.|+.++++ ..|.+=.++..+-.-. ...+|..|+.+++..|+.+..+
T Consensus 295 ivWs~iMsa----veWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 295 IVWSGIMSA----VEWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eeHhhhhHH----HhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHH
Confidence 45555554 4444333333222111 3457999999999999987543
No 404
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=63.91 E-value=29 Score=20.71 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=21.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----ccCCHhHHHHH
Q 036275 86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG-----RLGQFEKMEEV 131 (271)
Q Consensus 86 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g~~~~a~~~ 131 (271)
..|++-+|-++++.+-.....+....+..+|.... +.|+...|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45556666666655544322234444444444432 34555555443
No 405
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.79 E-value=74 Score=25.39 Aligned_cols=70 Identities=14% Similarity=0.015 Sum_probs=28.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHH---CC--CCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 036275 63 EEMKRLGITPTMKSHMLLLTAYSKTGNVA-KCEGVINQMHK---SG--LKPDTFVINSMLNLYGRLGQFEKMEEVL 132 (271)
Q Consensus 63 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~---~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 132 (271)
+.+.+.++++|......++..+...+.-+ +-..+.+++.+ .| ..-++.....+...|.+.|++.+|+..|
T Consensus 38 ev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 38 EVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33344455556555555555555443211 12222222221 11 1224455566666666666666665544
No 406
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=63.54 E-value=66 Score=26.41 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=56.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH----------cCCCHHHH
Q 036275 94 EGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG----------RGGFIEKM 163 (271)
Q Consensus 94 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----------~~g~~~~a 163 (271)
.++|+.|.+.++.|.-..+.-+.-.+.+.=.+.+++.+|+.+... ..-|..|+..|| -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 478888888899998888888877788888889999999988653 333666666665 35888888
Q ss_pred HHHHHhch
Q 036275 164 EGLFQSLP 171 (271)
Q Consensus 164 ~~~~~~m~ 171 (271)
.++++.-.
T Consensus 338 mkLLQ~yp 345 (370)
T KOG4567|consen 338 MKLLQNYP 345 (370)
T ss_pred HHHHhcCC
Confidence 88887654
No 407
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=63.42 E-value=1.1e+02 Score=27.41 Aligned_cols=174 Identities=8% Similarity=0.012 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
+..+|+.-+..-...|+.+.+.-+|++..--. ..-...|-..++.....|+.+.|..++....+--++.++. ...+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI-IHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHHH
Confidence 56778888888889999999999998876432 1123345555555566699999998887776653333333 233333
Q ss_pred H-HHcCCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCH--HHHHHHHHH-H
Q 036275 153 I-YGRGGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCL---EIFEEMIDAGCYPDG--GTAKVLISA-C 224 (271)
Q Consensus 153 ~-~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~---~~~~~m~~~~~~p~~--~~~~~l~~~-~ 224 (271)
. .-..|+++.|..+++.+...- |+. ..-..-+..-.+.|+.+.+. .++....+....+.. ..+....+. +
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 3 345679999999999998762 553 23334455566788888877 444444333222222 122222222 3
Q ss_pred hccCcHHHHHHHHHHHHhcccchhHH
Q 036275 225 SSEDQIEQVTTLVRTMHKDMKTALPI 250 (271)
Q Consensus 225 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 250 (271)
.-.++.+.|..++.++.+..+.....
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~ 477 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVL 477 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHH
Confidence 44688999999999998776554433
No 408
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=63.28 E-value=38 Score=21.87 Aligned_cols=49 Identities=8% Similarity=0.196 Sum_probs=35.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHh-cccchhHHHHHHHhhccccccc
Q 036275 216 TAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALPIYFNLYGEKGVARSN 264 (271)
Q Consensus 216 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~a 264 (271)
....+.......|..+.|..++..+.+ .++.-+..+++++...|...-|
T Consensus 36 ~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 36 DKEQILAEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCCccHH
Confidence 444444555556888888888888888 6777778888888888864433
No 409
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.94 E-value=71 Score=24.89 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=63.5
Q ss_pred HHHHHHHHHc--cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275 112 INSMLNLYGR--LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189 (271)
Q Consensus 112 ~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 189 (271)
|...++++.- .+++++|.+.+- +..+.|+ --.-++.++...|+.+.|..+++.+.-.. .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLS---HPSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhC---CCCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-
Confidence 4455666554 456666666652 2222222 12357888888899999999998865432 233334444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 228 (271)
..++.+.+|+..-+...+.. ....+..++..+....
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 66788999988777655421 1446667777766433
No 410
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=62.49 E-value=1.2e+02 Score=27.53 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=96.2
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
+..|+... .=+.++..+++.++...- .....+..++++....|-.+.+.-+.+.+.. +-..+...-..++....-.
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~-~~~~~~ea~~~l~~l~~~~ 425 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKS-KKLTDDEAAQLLASLPFHV 425 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHT-T-S-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhhc
Confidence 77777777 778888888888775432 3567888999999999966655555455544 3333343434444433333
Q ss_pred CCH-hHHHHHHHHHHhC-CCCCC-------hhhHHHHHHHHHcCC------------CHHHHHHHHHhchhCC-CCCCHH
Q 036275 123 GQF-EKMEEVLTAMEKG-SYAAD-------ISTYNILINIYGRGG------------FIEKMEGLFQSLPAKR-LKPDVV 180 (271)
Q Consensus 123 g~~-~~a~~~~~~m~~~-~~~~~-------~~~~~~li~~~~~~g------------~~~~a~~~~~~m~~~g-~~~~~~ 180 (271)
..+ .+.++.+..|.+. ....+ ..++..++.-++... -.++..+.+....... -.-+..
T Consensus 426 ~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 505 (618)
T PF01347_consen 426 RRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEE 505 (618)
T ss_dssp ----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HH
T ss_pred CCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHH
Confidence 232 2333333333332 11112 235666777777763 1122222222211100 012445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHhcc
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS--SEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~ 244 (271)
.-...|+++...|... +...+..........+...-...+.++. .....+++..++-.+..+.
T Consensus 506 ~~~~~LkaLgN~g~~~-~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~ 570 (618)
T PF01347_consen 506 EKIVYLKALGNLGHPE-SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNT 570 (618)
T ss_dssp HHHHHHHHHHHHT-GG-GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-T
T ss_pred HHHHHHHHhhccCCch-hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCC
Confidence 5566677777777654 4444444333322344444455566666 4556667777777665443
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.42 E-value=62 Score=25.53 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=38.4
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHh-----CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 112 INSMLNLYGRLGQFEKMEEVLTAMEK-----GSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 112 ~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
.-.+..-|.+.|++++|.++|+.+.. .-..+...+...+..++.+.|+.++...+--++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566677777888888877777642 123345566667777777777777766655443
No 412
>PRK09462 fur ferric uptake regulator; Provisional
Probab=62.40 E-value=55 Score=23.42 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275 65 MKRLGITPTMKSHMLLLTAYSKT-GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124 (271)
Q Consensus 65 ~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 124 (271)
+.+.|..++..-. .++..+... +..-.|.++++++.+.+...+..|..-.++.+...|-
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444555444322 333444332 3455666666666666555555554444555555543
No 413
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=61.78 E-value=33 Score=23.43 Aligned_cols=35 Identities=6% Similarity=-0.099 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 158 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
|++++....+-.+.. |...+...+...++++...|
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 444444444333333 33445555555555544433
No 414
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=61.59 E-value=1.6e+02 Score=28.46 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=54.5
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH----------------------HHHHHHHHhchhCCCCCC
Q 036275 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI----------------------EKMEGLFQSLPAKRLKPD 178 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----------------------~~a~~~~~~m~~~g~~~~ 178 (271)
+......|.++-..|.+.. +++|.++++.|.. +.-.+.|.++..-=-.-|
T Consensus 1159 k~D~r~da~klk~~me~qk--------~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~d 1230 (1304)
T KOG1114|consen 1159 KEDTRPDAVKLKKKMEKQK--------DTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASD 1230 (1304)
T ss_pred ccCCcchHHHHHHHHHHHH--------HHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCC
Confidence 3334445777777776542 5677777665532 112222222221100113
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcH
Q 036275 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQI 230 (271)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~ 230 (271)
..++..-...+...|++-.|.+++.++.+ .|-.++...+..++..+...|.-
T Consensus 1231 sK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1231 SKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred chheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 34444444455566777777777776654 44456666666666666666543
No 415
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.46 E-value=87 Score=25.44 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=64.9
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 114 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
.++....+.++.....+.+..+.. ...-...+......|++.+|++++.+.... .. +..-|+.+=.. ..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hH
Confidence 455666666666666666666643 333456677788999999999999887653 00 00011111110 11
Q ss_pred CHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036275 194 LYRRCLEIFEEMIDA-----GCYPDGGTAKVLISACSSEDQIEQVTTL 236 (271)
Q Consensus 194 ~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 236 (271)
++.+......++.+. -...|...|..++.+|...|+...+.+-
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 222222222222221 1147888999999999999987765543
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=61.03 E-value=26 Score=31.57 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=38.1
Q ss_pred hcCChHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275 86 KTGNVAKCEGVINQMHKSG-----------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154 (271)
Q Consensus 86 ~~~~~~~a~~~~~~m~~~~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 154 (271)
..+-|+-|..++......| .-.+...-.-++..|.+.|-.+.|.++.+.+-..- ....-|..-+..+
T Consensus 371 ~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~ 448 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWF 448 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHH
Confidence 3455777777765443333 22344555667777888887777777777665431 1234466666777
Q ss_pred HcCCCHHHHHHHHHhchh
Q 036275 155 GRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~~ 172 (271)
.++|+...+..+-+.+.+
T Consensus 449 ~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp H-----------------
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777666665555543
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=60.66 E-value=87 Score=28.31 Aligned_cols=102 Identities=15% Similarity=-0.038 Sum_probs=59.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|+...|.+.+.......-.-.-...-.|.+.+.+.|-...|..++.+..... ...+.++-.+.+++....+.++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 67777777776655433211122233445555666666667777776665554 33455666777777777788888887
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINIYG 155 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~ 155 (271)
|.+..+.. +.+.+.-+.|...-|
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcC-CCChhhHHHHHHHHH
Confidence 77766652 334444454444433
No 418
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=60.56 E-value=25 Score=22.13 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=5.2
Q ss_pred HHHHHHHCCCCCC
Q 036275 201 IFEEMIDAGCYPD 213 (271)
Q Consensus 201 ~~~~m~~~~~~p~ 213 (271)
+++.+.+.|..++
T Consensus 74 ~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCCCC
Confidence 3344444444443
No 419
>PRK09857 putative transposase; Provisional
Probab=60.48 E-value=70 Score=26.06 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036275 185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213 (271)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 213 (271)
+..-+.+.|.-+++.++.+.|...|+.++
T Consensus 246 iAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 246 IAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33333444444455566666666665433
No 420
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=60.18 E-value=43 Score=21.44 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=42.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccc
Q 036275 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVAR 262 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 262 (271)
...++..+.+.|+ .+......+- ......+++.++++.+...|+..+..+.+++...|+.+
T Consensus 18 ~~~v~~~L~~~~V-lt~~~~e~I~---~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 18 PKYLWDHLLSRGV-FTPDMIEEIQ---AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHH---cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3457777888774 3444443332 24456788889999999999988888888888877543
No 421
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.88 E-value=54 Score=27.96 Aligned_cols=176 Identities=18% Similarity=0.077 Sum_probs=89.8
Q ss_pred hHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 036275 45 NLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKS--HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF--VINSMLNLY 119 (271)
Q Consensus 45 ~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~ 119 (271)
..|..+. .|+.+-+..+ .+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...
T Consensus 4 ~~L~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A 75 (413)
T PHA02875 4 VALCDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDA 75 (413)
T ss_pred hHHHHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHH
Confidence 4566667 8887655444 45676665533 234455556677765 345555666655533 123456666
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH--HHHHHHHHHhcCCHHH
Q 036275 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT--WTSRLAAYSRKKLYRR 197 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~ 197 (271)
+..|+.+.+..+++.-....-..+..- .+.+...+..|+.+-+..++ +.|..|+... -...+...+..|+.+-
T Consensus 76 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~iv~~Ll----~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 76 VEEGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLDIMKLLI----ARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred HHCCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 788988876655543211100111111 23445555677765444444 4454444321 1233444466787755
Q ss_pred HHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHH
Q 036275 198 CLEIFEEMIDAGCYPDG---GTAKVLISACSSEDQIEQVTTLVR 238 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~ 238 (271)
+.. +.+.|..++. .-.+.+.. .+..|+.+-+..+++
T Consensus 151 v~~----Ll~~g~~~~~~d~~g~TpL~~-A~~~g~~eiv~~Ll~ 189 (413)
T PHA02875 151 IEL----LIDHKACLDIEDCCGCTPLII-AMAKGDIAICKMLLD 189 (413)
T ss_pred HHH----HHhcCCCCCCCCCCCCCHHHH-HHHcCCHHHHHHHHh
Confidence 444 4445544432 22333333 345577665555544
No 422
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=58.86 E-value=26 Score=23.72 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=18.8
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
..+...+..-.|.++++.+.+.+..++..|....+..+...|
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333333444445555555544444444444444444444443
No 423
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=58.44 E-value=30 Score=20.91 Aligned_cols=48 Identities=6% Similarity=-0.056 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 120 (271)
|+...++.++..+++-.-.+.++..+.+..+.|. .+..+|---++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3444555566666655556666666666665553 34444444444433
No 424
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=58.39 E-value=1e+02 Score=25.17 Aligned_cols=118 Identities=11% Similarity=0.068 Sum_probs=72.8
Q ss_pred HHHHHHccCC---HhHHHHHHHHHHhCCC----CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 115 MLNLYGRLGQ---FEKMEEVLTAMEKGSY----AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 115 li~~~~~~g~---~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
++...+ |+ .+.|.+.|+.....+. ..++..-..++....+.|+.+.-..+++..... .+..--..++.
T Consensus 135 ~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~ 209 (324)
T PF11838_consen 135 LLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLS 209 (324)
T ss_dssp HHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHH
T ss_pred HHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHH
Confidence 355555 54 4567778887776422 345666677888888888877766666666653 46778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCc--HHHHHHHHHH
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQ--IEQVTTLVRT 239 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~ 239 (271)
+.+-..+.+...++++.....+ +++.. .. .++.++...+. .+.+.+.+..
T Consensus 210 aLa~~~d~~~~~~~l~~~l~~~~v~~~d-~~-~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 210 ALACSPDPELLKRLLDLLLSNDKVRSQD-IR-YVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHTT-S-HHHHHHHHHHHHCTSTS-TTT-HH-HHHHHHH-CSTTCHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHcCCcccccHH-HH-HHHHHHhcCChhhHHHHHHHHHH
Confidence 9999999999999999988854 44444 33 33444442232 3666665554
No 425
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.26 E-value=1.1e+02 Score=25.38 Aligned_cols=138 Identities=4% Similarity=0.022 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHhcC------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 71 TPTMKSHMLLLTAYSKTG------------NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 71 ~~~~~~~~~li~~~~~~~------------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
|-|+.+|-.++..--..- -.+.-+.++++..+.+. -+....-.+|+.+.+..+.++..+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 556777776665433221 13455677888777743 46666778888888888999999999998886
Q ss_pred CCCCChhhHHHHHHHHHc---CCCHHHHHHHHHhchh------CCC----CCCHHH-------HHHHHHHHHhcCCHHHH
Q 036275 139 SYAADISTYNILINIYGR---GGFIEKMEGLFQSLPA------KRL----KPDVVT-------WTSRLAAYSRKKLYRRC 198 (271)
Q Consensus 139 ~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~------~g~----~~~~~~-------~~~li~~~~~~g~~~~a 198 (271)
. +-+...|...|+.... .-.+++..++|.+... .+. .+...+ +..+..-..+.|..+.|
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 2 4467788888777655 2346666666665432 111 111122 22233334578999999
Q ss_pred HHHHHHHHHCCC
Q 036275 199 LEIFEEMIDAGC 210 (271)
Q Consensus 199 ~~~~~~m~~~~~ 210 (271)
..+++-+.+.++
T Consensus 174 va~~Qa~lE~n~ 185 (321)
T PF08424_consen 174 VALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHc
Confidence 999999888665
No 426
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=58.24 E-value=43 Score=22.54 Aligned_cols=36 Identities=11% Similarity=-0.046 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHhch--hCCCCCCHHHHHHHHHHHHhcC
Q 036275 158 GFIEKMEGLFQSLP--AKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 158 g~~~~a~~~~~~m~--~~g~~~~~~~~~~li~~~~~~g 193 (271)
|+++.....+-... ..+..++...+...++++...|
T Consensus 61 Ge~~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 61 GEYGDIYLALLKQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred CchHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 55554444443322 3444555555555555555443
No 427
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=57.95 E-value=37 Score=22.89 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=22.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275 81 LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 124 (271)
+..+...+..-.|.++++++.+.+...+..|..-.++.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33344444445555666666655555555554444555555553
No 428
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.71 E-value=41 Score=22.71 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=13.0
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 112 INSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 112 ~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555544443
No 429
>PRK09687 putative lyase; Provisional
Probab=57.47 E-value=1e+02 Score=24.94 Aligned_cols=188 Identities=14% Similarity=0.014 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-----h
Q 036275 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV----AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF-----E 126 (271)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-----~ 126 (271)
+++...+..+.+. +|...-...+.++.+.|+. +++...+..+... .++...-...+.++...+.. .
T Consensus 53 ~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~ 127 (280)
T PRK09687 53 QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSP 127 (280)
T ss_pred chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccch
Confidence 3344444444332 3555555666666666653 4566666665433 45555555555555554321 1
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 036275 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK-LYRRCLEIFEEM 205 (271)
Q Consensus 127 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m 205 (271)
.+...+..... .++..+-...+.++++.|+ +++...+-.+... ++...-...+.++.+.+ +...+...+..+
T Consensus 128 ~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~ 200 (280)
T PRK09687 128 KIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAM 200 (280)
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 22222222222 2344555566666666665 3455555555442 34444444455554432 123444444444
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccc
Q 036275 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGV 260 (271)
Q Consensus 206 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~ 260 (271)
.. .+|..+-...+.++.+.|+.. +...+-+..+.+. .....+.++.+.|.
T Consensus 201 L~---D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~~-~~~~a~~ALg~ig~ 250 (280)
T PRK09687 201 LQ---DKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKGT-VGDLIIEAAGELGD 250 (280)
T ss_pred hc---CCChHHHHHHHHHHHccCChh-HHHHHHHHHcCCc-hHHHHHHHHHhcCC
Confidence 43 345555556666666666643 3333333333322 23334455555554
No 430
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=57.45 E-value=83 Score=23.94 Aligned_cols=172 Identities=8% Similarity=0.100 Sum_probs=97.0
Q ss_pred cCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 036275 68 LGITPTMKSHMLLLTAYSKT----GNVAKCEGVINQMHKSGLKPDTF----VINSMLNLYGRLGQFEKMEEVLTAMEKGS 139 (271)
Q Consensus 68 ~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 139 (271)
.|..++...++.++..+.+. +..+-+..+=.+....++.++.. ..-.=+..|-+.||+.+.=.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 46678899999998888765 34555555555556665554433 23334567778888888777776665432
Q ss_pred CCC-ChhhHH-HHHHHHHcCC--CHHHHHHHHHhchhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 140 YAA-DISTYN-ILINIYGRGG--FIEKMEGLFQSLPAKRLKPDVV-------TWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 140 ~~~-~~~~~~-~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
-.+ +...+. .+..++.+.- +..--...|.+..-...+-|.. +--.++..|.+..++.+..++++.|.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 112121 1122222111 1111111222222221111211 2234455677888899999999888765
Q ss_pred CCC--------------CCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275 209 GCY--------------PDGGTAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 209 ~~~--------------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
.+. +--...+.....|.+.|..|.|..++++
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 433 2334566777778899999999998884
No 431
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=57.06 E-value=65 Score=25.40 Aligned_cols=80 Identities=18% Similarity=0.082 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC-----C--------CC------------CCHH
Q 036275 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-----R--------LK------------PDVV 180 (271)
Q Consensus 126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--------~~------------~~~~ 180 (271)
++|..+++.-... ..++.+...+.-++...|+.+.+.++++.+... + .. .++.
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vE 193 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVE 193 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHH
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHH
Confidence 3455555444322 345555555556666666666666666665321 0 00 0122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
+=.-.+-++.+.++.+.+..+.+.+.+
T Consensus 194 tTaYaLLa~l~~~~~~~~~~iv~WL~~ 220 (246)
T PF07678_consen 194 TTAYALLALLKRGDLEEASPIVRWLIS 220 (246)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333333444555777788777777765
No 432
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=56.69 E-value=1.5e+02 Score=27.20 Aligned_cols=164 Identities=7% Similarity=0.035 Sum_probs=0.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHhHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL---GQFEKM 128 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a 128 (271)
+|+||.|++.+-. ..+...+...+...+.-|.-.+-.+....=+-.....+..| .-+..||..|.+. .+..+|
T Consensus 271 tgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~--ln~arLI~~Y~~~F~~td~~~A 346 (613)
T PF04097_consen 271 TGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP--LNFARLIGQYTRSFEITDPREA 346 (613)
T ss_dssp TT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTTTT-HHHH
T ss_pred HhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC--cCHHHHHHHHHHHHhccCHHHH
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC---------------CCCCHHHHHHHHHHHH---
Q 036275 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR---------------LKPDVVTWTSRLAAYS--- 190 (271)
Q Consensus 129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------------~~~~~~~~~~li~~~~--- 190 (271)
.+++--+....-+.....+...+.-+.-..+ +-..++-.+...| +..+..-...++...+
T Consensus 347 l~Y~~li~~~~~~~~~~l~~~~l~eLvletr--ef~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~ 424 (613)
T PF04097_consen 347 LQYLYLICLFKDPEQRNLFHECLRELVLETR--EFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAREA 424 (613)
T ss_dssp HHHHHGGGGS-SCCHHHHHHHHHHHHHHHH----HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHccC--CHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHHHH
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 191 -RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 191 -~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
..|++++|..+|.... +++.+.+++.+....
T Consensus 425 e~~g~~~dAi~Ly~La~----------------------~~d~vl~lln~~Ls~ 456 (613)
T PF04097_consen 425 EERGRFEDAILLYHLAE----------------------EYDKVLSLLNRLLSQ 456 (613)
T ss_dssp HHCT-HHHHHHHHHHTT-----------------------HHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHH
No 433
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=56.10 E-value=52 Score=21.19 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 95 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
++|+-....|+..|...|..+++...-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666776776666666666566666666666653
No 434
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=55.72 E-value=52 Score=21.04 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccc
Q 036275 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVAR 262 (271)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 262 (271)
......+-......|..+.|..+++.+. .++.-...+++++...|..+
T Consensus 32 ~~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~~~Wf~~Fl~AL~~~~~~~ 79 (84)
T cd08789 32 AEDKERIQAAENNSGNIKAAWTLLDTLV-RRDNWLEPFLDALRECGLGH 79 (84)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh-ccCChHHHHHHHHHHcCCHH
Confidence 3344445555556677777777777777 56666666777777766544
No 435
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.44 E-value=1.1e+02 Score=24.89 Aligned_cols=127 Identities=10% Similarity=0.015 Sum_probs=78.6
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHcCCCHHHHHHHHHhchhCCC----CCCHHHHH
Q 036275 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADIS-------TYNILINIYGRGGFIEKMEGLFQSLPAKRL----KPDVVTWT 183 (271)
Q Consensus 115 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~~~~~~~ 183 (271)
+.+-..+.++.++|+..+.++...|+..+.. +...+...|.+.|+...--++....++.-. .-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4555678899999999999999988765543 445677889999988776666655433110 11233455
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 184 SRLAAYSR-KKLYRRCLEIFEEMIDAGCYPD-----GGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 184 ~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
.||.-+.. ...++...++.....+-..+-+ ...-.-++..+.+.|.+..|..++..+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 55555543 3345555555544443211111 1222346777888999999998877654
No 436
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.42 E-value=1.3e+02 Score=25.58 Aligned_cols=56 Identities=9% Similarity=0.029 Sum_probs=40.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HccCCHhHHHHHHHHHHhC
Q 036275 82 TAYSKTGNVAKCEGVINQMHKSGLKPDTF--VINSMLNLY--GRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~--~~~g~~~~a~~~~~~m~~~ 138 (271)
..+...+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445789999999999999987 555554 455555554 3567888999999887665
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=55.13 E-value=99 Score=24.10 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC
Q 036275 103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA-----DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177 (271)
Q Consensus 103 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 177 (271)
..+.++..-+|.|+--|.-...+.+|.+.| ..+.|+.| +...=..-|......|++++|.+...++-..-+.-
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~ 97 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT 97 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc
Q ss_pred CHHHHHHHHHH----HHhcCCHHHHHHHHHH
Q 036275 178 DVVTWTSRLAA----YSRKKLYRRCLEIFEE 204 (271)
Q Consensus 178 ~~~~~~~li~~----~~~~g~~~~a~~~~~~ 204 (271)
|...+-.|..- ..+.|..++|.++.+.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 438
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=55.12 E-value=34 Score=23.37 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 79 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
.++..+.+.+..-.|.++++.+.+.+...+..|.---|+.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344455555555566666666666655555555444444444444
No 439
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.42 E-value=1.1e+02 Score=25.15 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 172 (271)
+++.+.+.++.|.-.++.-+.-.+...=.+.++..+++.+..
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 444444444444444444444444444444445555544443
No 440
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.35 E-value=1.6e+02 Score=26.22 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=27.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 88 GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 88 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
.+.+.|....-+|...|+..+..|...++ |.-+++++.-.++.++..+.
T Consensus 312 l~~k~~~~~~~dll~aGvDTTs~tl~~~L--y~LarnP~~Q~~L~~Ei~~~ 360 (519)
T KOG0159|consen 312 LSRKDAKANVMDLLAAGVDTTSNTLLWAL--YELARNPEVQQRLREEILAV 360 (519)
T ss_pred CCHHHHHHHHHHHHHHhccchHHHHHHHH--HHHhcChHHHHHHHHHHHhh
Confidence 44556666666666666665555544443 44445555555666666543
No 441
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=53.88 E-value=21 Score=24.37 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=14.2
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 189 (271)
..+...+..-.|.++++.+.+.+...+..|...-|..+
T Consensus 15 ~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 15 ELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp HHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 33333333444444444444444333433333333333
No 442
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=53.79 E-value=20 Score=24.99 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=21.9
Q ss_pred HHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036275 47 FVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHM 78 (271)
Q Consensus 47 ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 78 (271)
++++. .|+...|.++++.+...|+.|....|.
T Consensus 4 L~Da~L~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 4 LIDALLAGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 56666 888888888888888888777665553
No 443
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=53.75 E-value=58 Score=20.98 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=38.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhcccc
Q 036275 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVA 261 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 261 (271)
+..+++.+.+.| ..+...+..+- ......++|..+++.+..+|+...+.+.+++.+.|..
T Consensus 16 v~~ild~L~~~g-vlt~~~~e~I~---~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~ 75 (86)
T cd08323 16 TSYIMDHMISDG-VLTLDEEEKVK---SKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYK 75 (86)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHH---cCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCh
Confidence 445677777776 34544444332 2445677788888888888887777777777665543
No 444
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.76 E-value=1e+02 Score=25.99 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=30.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHccCCHhHHHHHHHHHHhCC
Q 036275 86 KTGNVAKCEGVINQMHKSGLKPDTFVINSM----LNLYGRLGQFEKMEEVLTAMEKGS 139 (271)
Q Consensus 86 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~ 139 (271)
+-++...+......+.+..+..=..||.+| |.-..+.+..++|.+..-+|.+.|
T Consensus 289 kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 289 KDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 445555566666666555554444555554 222334566667777776666654
No 445
>PF15469 Sec5: Exocyst complex component Sec5
Probab=52.52 E-value=95 Score=23.08 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=13.9
Q ss_pred HHHHHHccCCHhHHHHHHHHHHh
Q 036275 115 MLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 115 li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
-|.-+.+.|+++.+...|...+.
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 45555666666666666655543
No 446
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=51.97 E-value=64 Score=20.93 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccc
Q 036275 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGV 260 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~ 260 (271)
...++..+.+.|+ .+...+..+- ......+++.+++..+.+.|+..+..+.+++...|+
T Consensus 22 ~~~v~~~L~~~gv-lt~~~~~~I~---~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDI-LTDSMAESIM---AKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHH---cCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 3446777777774 3444444332 233456788888888888888888888888876554
No 447
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=51.97 E-value=70 Score=21.42 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCC
Q 036275 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK--LYRRCLEIFEEMIDAGC 210 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~ 210 (271)
..++.-|...++.++|.+-+.++.... -.......+|..+...+ .-+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 456677788888888888888876432 23334455555555443 23445566666665553
No 448
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=51.60 E-value=41 Score=22.55 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=30.5
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC--HHHHHHHHHhchhCC
Q 036275 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF--IEKMEGLFQSLPAKR 174 (271)
Q Consensus 113 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g 174 (271)
..++.-|...|+.++|...+.++.-. .........++......++ -+.+..++..+...+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 45666777778888888887775322 1122333444444444322 233445555555443
No 449
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.58 E-value=2.2e+02 Score=27.12 Aligned_cols=193 Identities=9% Similarity=0.008 Sum_probs=108.0
Q ss_pred chHHHHHH---hcCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---H
Q 036275 44 PNLFVFIF---SIYFSDAHAVFEEMKRL----GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI---N 113 (271)
Q Consensus 44 y~~ll~~~---~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~ 113 (271)
|+.+-... .|+++.|.++-+..... -..+....+..+..+..-.|+++.|..+..+..+..-.-+...+ .
T Consensus 460 ~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~ 539 (894)
T COG2909 460 FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWS 539 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 66654444 99999999988877554 23345666777888888899999999888766554223333332 2
Q ss_pred HH--HHHHHccCCHh--HHHHHHHHHHhC-----CC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC--CCCCH--
Q 036275 114 SM--LNLYGRLGQFE--KMEEVLTAMEKG-----SY-AADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--LKPDV-- 179 (271)
Q Consensus 114 ~l--i~~~~~~g~~~--~a~~~~~~m~~~-----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~-- 179 (271)
.+ ...+...|+.. +.+..|...... .+ .+-..+...+..++.+ ++.+..-...-.+.| ..|..
T Consensus 540 ~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~ 616 (894)
T COG2909 540 LLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLL 616 (894)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhH
Confidence 22 22344556322 222233322221 11 1223445555555555 444333333222211 12222
Q ss_pred H--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHH--HhccCcHHHHHHHHHH
Q 036275 180 V--TWTSRLAAYSRKKLYRRCLEIFEEMIDAGC----YPDGGTAKVLISA--CSSEDQIEQVTTLVRT 239 (271)
Q Consensus 180 ~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 239 (271)
. .+..|.......|+.++|...++++..... .++..+-...++. -...|+...+.....+
T Consensus 617 ~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 617 SRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2 223677888899999999999998875322 3343333333433 3467888887777666
No 450
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.49 E-value=1.2e+02 Score=24.04 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=76.2
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHhHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTM-KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN-SMLNLYGRLGQFEKME 129 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~ 129 (271)
..+++.|+..|.+.... .|+. .-|..-+.++.+..+++.+..=-.+.++. .|+.+--. .+..+......+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHH
Confidence 55677888877666654 4555 55567777888888888877665555554 66665433 3455566778889999
Q ss_pred HHHHHHH----hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 130 EVLTAME----KGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 130 ~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
..+.+.. +..+++-......|..+--+.-...+..++.++.
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888763 3444555667777777766655666666665554
No 451
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=51.38 E-value=1.6e+02 Score=25.23 Aligned_cols=184 Identities=14% Similarity=0.088 Sum_probs=109.5
Q ss_pred hcCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c
Q 036275 52 SIYFSDAHAVFEEMKRL-----GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----L 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 122 (271)
.++.+.|++-+-...+. +...+...+..++..|...++|+.--+...-+.+...+ .......++.-+.. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCC
Confidence 67777777766555432 34556777888889999999998776665544333212 22223333333321 1
Q ss_pred CCHhHHHHHHHHH---HhCCCCC---ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH-----------
Q 036275 123 GQFEKMEEVLTAM---EKGSYAA---DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR----------- 185 (271)
Q Consensus 123 g~~~~a~~~~~~m---~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l----------- 185 (271)
.+.+--+.+.+-+ .+..+-. -...-..|...+-..|+.++|..++.+..- .||..+
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~V-------ETygsm~~~ekV~fiLE 176 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQV-------ETYGSMEKSEKVAFILE 176 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcch-------hhhhhhHHHHHHHHHHH
Confidence 2223333333332 2222211 123335677888899999999999887653 244433
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH-----HHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 186 -LAAYSRKKLYRRCLEIFEEMIDAGC-YPDGG-----TAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 186 -i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
++.|...+|+-.|.-+-+.....=+ .||.. -|..+++...+.+.+=.+.+.++.+...
T Consensus 177 QmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 177 QMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 5667778888888777766654322 24432 4677777777777777777777777543
No 452
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=51.10 E-value=25 Score=21.82 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=20.8
Q ss_pred HHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036275 47 FVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS 85 (271)
Q Consensus 47 ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 85 (271)
+..+. .|+.+.+.+++++..+.|.+|.......+..+..
T Consensus 8 l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 8 LLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp HHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34444 6666666666666666655555544444444443
No 453
>PHA00425 DNA packaging protein, small subunit
Probab=50.93 E-value=61 Score=20.39 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=33.4
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 116 (271)
.=+.+.|..++..++... +-++..||++-..+.+.+ ..-+.++||..+..-+.
T Consensus 12 mlDTE~a~~mL~DL~dde-kRtPQLYnAIgKlL~RHk-----------F~isKl~pD~~iLg~la 64 (88)
T PHA00425 12 MLDTEMAQRMLADLKDDE-KRTPQLYNAIGKLLDRHK-----------FQISKLQPDENILGGLA 64 (88)
T ss_pred HHhHHHHHHHHHHhcCcc-ccChHHHHHHHHHHHHhc-----------ccccccCCcHHHHHHHH
Confidence 446677788887776543 557888888877665543 22234577777654443
No 454
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=50.81 E-value=28 Score=16.55 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=14.3
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036275 53 IYFSDAHAVFEEMKRLGITPTMKSHMLLL 81 (271)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~li 81 (271)
|+++.|..+|+++.... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 34556666666665442 33444454433
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.81 E-value=1.1e+02 Score=23.29 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=12.0
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 036275 81 LTAYSKTGNVAKCEGVINQMH 101 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~m~ 101 (271)
+-.....|++++|..-++++.
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 333445566776666666554
No 456
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.63 E-value=2.2e+02 Score=26.76 Aligned_cols=96 Identities=9% Similarity=0.091 Sum_probs=57.7
Q ss_pred hcCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITP---TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 128 (271)
.+.+++|++.-+... |..| ........|..+...|++++|-...-+|... +..-|.--+..+...++....
T Consensus 369 ~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 369 KKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred hhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh
Confidence 667777777665443 2233 3456777788888888888887777777643 455566666666666665543
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275 129 EEVLTAMEKGSYAADISTYNILINIYGR 156 (271)
Q Consensus 129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~ 156 (271)
..+ +....-..+...|..++..|..
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH
Confidence 332 2222112345566666666665
No 457
>PRK12798 chemotaxis protein; Reviewed
Probab=50.58 E-value=1.6e+02 Score=25.30 Aligned_cols=195 Identities=10% Similarity=0.056 Sum_probs=114.7
Q ss_pred HHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccC
Q 036275 48 VFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYS-KTGNVAKCEGVINQMHKS--GLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 48 l~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g 123 (271)
+.+| .|+-++|.+.|..+.-...++....|-.|+.+-. ...+...|+.+|+...=. |.-.......--|......|
T Consensus 120 ~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g 199 (421)
T PRK12798 120 ALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLG 199 (421)
T ss_pred HHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcC
Confidence 4455 9999999999988877777777777777776654 446788899998876543 21112233444455667888
Q ss_pred CHhHHHHHHHHHHhC-CCCCChhhH-HHHHHHHHcC---CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036275 124 QFEKMEEVLTAMEKG-SYAADISTY-NILINIYGRG---GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~-~~~~~~~~~-~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 198 (271)
+.+++..+-.+-..+ ...|-..-| ..+..+..+. -..+.-..++..|.... -...|..+-+.-...|+.+-|
T Consensus 200 ~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~---q~~lYL~iAR~Ali~Gk~~lA 276 (421)
T PRK12798 200 DADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPER---QRELYLRIARAALIDGKTELA 276 (421)
T ss_pred cHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchh---HHHHHHHHHHHHHHcCcHHHH
Confidence 888876665444433 112222222 2222233333 33444555555554321 246888888988999999888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHH--HhccCcHHHHHHHHHHHHhccc
Q 036275 199 LEIFEEMIDAGCYPD-GGTAKVLISA--CSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 199 ~~~~~~m~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
...-.+.....-..+ ...-..|..+ -.-..+++++.+-+..+.....
T Consensus 277 ~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 277 RFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 777776655321111 1122223333 2345667788887777765443
No 458
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.50 E-value=1.2e+02 Score=23.77 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=16.5
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAY 84 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 84 (271)
.|+++++.+.++++...+...+..-.+.+-.+|
T Consensus 14 ~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 14 AERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp TTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 556666666666665555555555444444444
No 459
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=49.52 E-value=62 Score=20.11 Aligned_cols=36 Identities=3% Similarity=-0.045 Sum_probs=25.2
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG 88 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 88 (271)
.-+.+.|..++..++... +-++..||++...+.+++
T Consensus 10 mlDtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 10 MLDTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHcc
Confidence 446677888888776543 557888888887766554
No 460
>PRK09857 putative transposase; Provisional
Probab=48.85 E-value=1.5e+02 Score=24.23 Aligned_cols=66 Identities=5% Similarity=-0.022 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
+..++.-..+.++.++..++++.+.+. ++......-++.+-+...|.-+++.++.++|...|....
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 444554445666666666777666654 233444455566666777777788888888888776544
No 461
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=48.81 E-value=2.6e+02 Score=27.16 Aligned_cols=187 Identities=9% Similarity=0.010 Sum_probs=97.3
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH--------HHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPDT--------FVINSMLNLY 119 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~--------~~~~~li~~~ 119 (271)
.|..---.++|+..... ++-.+...+.-+.+..|.++-+.+..+.+.+. ..+-+. ..|-.-+.+.
T Consensus 669 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (932)
T PRK13184 669 SGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEAL 745 (932)
T ss_pred hcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHH
Confidence 66666666777766553 24466666666667888888887777666542 111111 1122224444
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCCH
Q 036275 120 GRLGQFEKMEEVLTAMEKGSYAADI--STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD--VVTWTSRLAAYSRKKLY 195 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~ 195 (271)
....+.+++.+.+... +|.. ..+..++.-..-.++.+....+.+.+...-.... ...-...|.+|.-..++
T Consensus 746 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (932)
T PRK13184 746 SNKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDL 820 (932)
T ss_pred HccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccH
Confidence 4444555555433332 3332 2333344444444555555555555444311111 22345567888888899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHhcccch
Q 036275 196 RRCLEIFEEMIDAGCYPDGGTAKVLISA--CSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
++|.+++..--..-.. +......++-+ ++-.++-+.|...|....+.-..+
T Consensus 821 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (932)
T PRK13184 821 KKAYKLLNRYPLDLLL-DEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFP 873 (932)
T ss_pred HHHHHHHHhCChhhhc-cccchHHHHHHHHHHhcCchhHHHHHHhhccccccCc
Confidence 9998888654332111 22222222332 344566777777777766444333
No 462
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.54 E-value=1.6e+02 Score=24.41 Aligned_cols=119 Identities=10% Similarity=0.064 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCHhHHHHH
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR---LGQFEKMEEV 131 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~ 131 (271)
.+.-+.++++..+.+ +-+...+-..|..+.+..+.+...+-|+++...... +...|...|+.... .-.++.+..+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 566778888888775 568888888999999999999999999999987432 67778888777654 2356667666
Q ss_pred HHHHHhC------CC----CCChh-------hHHHHHHHHHcCCCHHHHHHHHHhchhCCC
Q 036275 132 LTAMEKG------SY----AADIS-------TYNILINIYGRGGFIEKMEGLFQSLPAKRL 175 (271)
Q Consensus 132 ~~~m~~~------~~----~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 175 (271)
|.+..+. +. .+... .+.-+......+|..+.|..+++-+.+..+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6654321 11 11112 233334445688999999999999887654
No 463
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=48.40 E-value=77 Score=21.64 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=20.4
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150 (271)
Q Consensus 116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 150 (271)
++...++...++|+++++.|.+.| ..+...-+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 444556666777777777777776 4444433333
No 464
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.34 E-value=83 Score=21.22 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275 147 YNILINIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 147 ~~~li~~~~~~g~~~~a~~~~~~m~~ 172 (271)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777777777777777777777665
No 465
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.20 E-value=74 Score=20.60 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=7.2
Q ss_pred hcCChHHHHHHHHHH
Q 036275 86 KTGNVAKCEGVINQM 100 (271)
Q Consensus 86 ~~~~~~~a~~~~~~m 100 (271)
..|++++|...+++.
T Consensus 53 ~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 53 RFGHYEEALQALEEA 67 (94)
T ss_pred HhCCHHHHHHHHHHH
Confidence 345555555554444
No 466
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.95 E-value=2.3e+02 Score=26.15 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=66.9
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPT------MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 116 (271)
||..-+.+ ..++..+.+.|..-.+. ++.| ......+--+|....++|.|.+++++..+... .++.+--.+.
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-~~~l~q~~~~ 435 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-QSPLCQLLML 435 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-ccHHHHHHHH
Confidence 88888888 89999999999876543 2323 23355677778888999999999999988742 2444545566
Q ss_pred HHHHccCCHhHHHHHHHHHH
Q 036275 117 NLYGRLGQFEKMEEVLTAME 136 (271)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~m~ 136 (271)
.+....|.-++|........
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHhcchHHHHHHHHHHH
Confidence 77778888888887776554
No 467
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=47.68 E-value=89 Score=21.35 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275 126 EKMEEVLTAMEKG-SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203 (271)
Q Consensus 126 ~~a~~~~~~m~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 203 (271)
+++.+.+.+++.. |+.| ++..--++...+.....++.. ..-...|+..+..||. |+++.....+=
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~~----~~~~d~g~e~~~~t~~---------Ge~~~~~~~ll 72 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSDE----DIKDDSGLELNWKTFT---------GEYDDIYEALL 72 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCCC----ccCCCCCeEEeeeeec---------CchHHHHHHHH
Confidence 3566666666544 6666 544444444444333333200 0011223333333333 66666665555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccC
Q 036275 204 EMIDAGCYPDGGTAKVLISACSSED 228 (271)
Q Consensus 204 ~m~~~~~~p~~~~~~~l~~~~~~~g 228 (271)
.+.. |...|...+...+++....|
T Consensus 73 ~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 73 KQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 5444 55667777777777765544
No 468
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=46.48 E-value=79 Score=20.41 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=30.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 200 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
++|+-....|+..|...|..+++.....--.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666677777777777777777766677777777777643
No 469
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=45.78 E-value=92 Score=24.09 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 036275 54 YFSDAHAVFEEMKRLGI-------TPTMKSHMLLLTAYSKTGN---------VAKCEGVINQMHKSGLKP-DTFVINSML 116 (271)
Q Consensus 54 ~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~-~~~~~~~li 116 (271)
..+.|..++.+|--..+ .-...-|..+..+|.+.|- .+...++++..++.|++. =++.|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 46777777777743321 1245567777777777662 344455555556665532 234566666
Q ss_pred HHHHccCCHhHHHHHHHHHH
Q 036275 117 NLYGRLGQFEKMEEVLTAME 136 (271)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~m~ 136 (271)
+--...-+++++.+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 65555556666666665543
No 470
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.70 E-value=1.6e+02 Score=23.65 Aligned_cols=189 Identities=12% Similarity=0.023 Sum_probs=121.1
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT----GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----LG 123 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g 123 (271)
.+.+..+.+.+......+.. .....+...|... .+...|..+|....+.|.. .....|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCccc
Confidence 78888888888888775522 4444455555433 4578899999877777643 233335555544 34
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC-------CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----c
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-------FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR----K 192 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~ 192 (271)
+..+|...++..-+.|..+...+...+...|.... +...|...+.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 88899999999988885443333445555555431 3347889999888776 45555555555533 4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------------cHHHHHHHHHHHHhcccchhHHHHH
Q 036275 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED---------------QIEQVTTLVRTMHKDMKTALPIYFN 253 (271)
Q Consensus 193 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~ 253 (271)
.+..+|...|....+.|. ......+- .+...| +...+...+......+.......+.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 578899999998888874 22222222 333333 8888999999888777665544443
No 471
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.52 E-value=2.4e+02 Score=25.66 Aligned_cols=66 Identities=14% Similarity=0.015 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275 181 TWTSRLAAYSRKKLYRRC-LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a-~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
..+.++......+.-++. .++++.+.+.+..-...-|-.++++....+|.+.|.++++++.+++..
T Consensus 174 i~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end~ 240 (926)
T COG5116 174 IINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKENDL 240 (926)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhhh
Confidence 344444443333332222 234444444432222223566788888889999999999998776543
No 472
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=45.19 E-value=27 Score=20.94 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=21.9
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcC-CCCCH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLG-ITPTM 74 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~-~~~~~ 74 (271)
|....-.- .=+++.|...|.++...| +||+.
T Consensus 29 ~s~~cLe~~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 29 YSQMCLEDNNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCChhh
Confidence 55444333 668999999999998765 55543
No 473
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=44.76 E-value=55 Score=28.47 Aligned_cols=98 Identities=14% Similarity=-0.028 Sum_probs=46.1
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHhHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~ 130 (271)
.+.++.|+.++.+..+.. +..+..|..-..++.+.+++..|+.=+.+..+.. |+- ..|.-=..++.+.+.+.+|..
T Consensus 17 ~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred cchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHHH
Confidence 556666666666666543 2233333333355566666666655555554442 211 112222233334444555555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHH
Q 036275 131 VLTAMEKGSYAADISTYNILINIY 154 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~~~ 154 (271)
.|+..... .|+..-....+.-|
T Consensus 94 ~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 94 DLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHhhhc--CcCcHHHHHHHHHH
Confidence 55554442 45544444444433
No 474
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.75 E-value=1.7e+02 Score=23.92 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH---HHccCCHhHHHHHHHHHHhCCCCCC--
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPDTFVINSMLNL---YGRLGQFEKMEEVLTAMEKGSYAAD-- 143 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~~~-- 143 (271)
.++.+..+...|++-++.+.++++.++..+. |.+.|+.. +.++. |....-.++.++..+.|.+.|-.-+
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l--~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFL--CKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHH--HHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 4566777777888888888777777655443 44444433 22322 3333335566666677777764322
Q ss_pred --hhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275 144 --ISTYNILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 144 --~~~~~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
-.+|..+- +....++.+|-.++.+..
T Consensus 192 NRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 192 NRYKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hhHHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 22333222 223345666666665544
No 475
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.50 E-value=86 Score=20.29 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=27.7
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCC--H--HHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 190 SRKKLYRRCLEIFEEMID----AGCYPD--G--GTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~----~~~~p~--~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
.+.|++.+|.+.+.+..+ .+.... . .....+.......|+.++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777776554444332 221110 1 1222334445667888888887777643
No 476
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=44.50 E-value=1.3e+02 Score=22.39 Aligned_cols=131 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153 (271)
Q Consensus 74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 153 (271)
....+..+..++..-..+. ++-..+.+.+..++. ..+++..+.+.|+-.|..--...+..
T Consensus 20 ~~~~~~Al~~Ls~R~rse~--ELr~kL~k~~~~~~~------------------Ie~Vi~~l~~~~~ldD~~fAe~~i~~ 79 (174)
T COG2137 20 AKGLNRALRLLSRRDRSEK--ELRRKLAKKEFSEEI------------------IEEVIDRLAEEGYLDDTRFAEAYIRS 79 (174)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhccCCHHH------------------HHHHHHHHHHcCcccHHHHHHHHHHH
Q ss_pred HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccC
Q 036275 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSED 228 (271)
Q Consensus 154 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g 228 (271)
-.+.| ..-..+.+++.+.|+ +..+....+..+......+.|..++..-.... ..|+..-...+.+.+...|
T Consensus 80 r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rG 151 (174)
T COG2137 80 RSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRG 151 (174)
T ss_pred HHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcC
No 477
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=44.37 E-value=2.4e+02 Score=25.45 Aligned_cols=194 Identities=11% Similarity=0.043 Sum_probs=97.1
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR- 121 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~- 121 (271)
+..|+..+ .=+.+.-.+++.++.. . . ...+..++++....|.......+.+.+....+. +...-..+..+..-
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~-~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~~~~~~~ 387 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-K-K--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLAVLPHTA 387 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhh
Confidence 77788888 7778888888887754 2 1 567888889988888655555555555544433 33333334433333
Q ss_pred -cCCHhHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHcCCCH------HHHHHHHHhchhCCC-CCCHHHHHHHH
Q 036275 122 -LGQFEKMEEVLTAMEKGSYAADI-------STYNILINIYGRGGFI------EKMEGLFQSLPAKRL-KPDVVTWTSRL 186 (271)
Q Consensus 122 -~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~-~~~~~~~~~li 186 (271)
.-..+-...+++-+......+.. .++..++.-+|..... ++....+.+...... .-+..--...|
T Consensus 388 ~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 467 (574)
T smart00638 388 RYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYL 467 (574)
T ss_pred hcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHH
Confidence 23333333333333333344443 4455556655544431 333333333221110 11333345566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHhc
Q 036275 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE--DQIEQVTTLVRTMHKD 243 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~ 243 (271)
+++...|....... +..........+...-...+.++.+. ...+.+..++-.+..+
T Consensus 468 kaLGN~g~~~~i~~-l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 468 KALGNAGHPSSIKV-LEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred HhhhccCChhHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Confidence 77777776544333 33333322233344444445555432 3455555555555433
No 478
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.06 E-value=83 Score=20.01 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=14.6
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCC
Q 036275 116 LNLYGRLGQFEKMEEVLTAMEKGS 139 (271)
Q Consensus 116 i~~~~~~g~~~~a~~~~~~m~~~~ 139 (271)
++.+.++.-.++|+++++.|.++|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444555566666666666666665
No 479
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.87 E-value=1.4e+02 Score=22.72 Aligned_cols=153 Identities=7% Similarity=-0.035 Sum_probs=85.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH-HHHHHHccC--
Q 036275 52 SIYFSDAHAVFEEMKRLGITPT----MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-FVINS-MLNLYGRLG-- 123 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~-li~~~~~~g-- 123 (271)
.++.+-+..+=.+...++..++ ......-+..|-+.|||.+.=.+|-......-.++. ..+.. +..++.+.-
T Consensus 25 ~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gce~~~dlq~~~~~va~~Ltkd~Kd 104 (233)
T PF14669_consen 25 KQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGCEKFADLQRFCACVAEALTKDSKD 104 (233)
T ss_pred hhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhcCCHHHHHHHHHHHHHHHHhcccc
Confidence 6667777777676666665443 233334455677788888877777655443222221 12211 122222111
Q ss_pred CHhHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHcCCCHHHHHHHHHhchhCCC--------------CCCHHHH
Q 036275 124 QFEKMEEVLTAMEKGSYAADI-------STYNILINIYGRGGFIEKMEGLFQSLPAKRL--------------KPDVVTW 182 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--------------~~~~~~~ 182 (271)
+..--...|.+..-...+-|. .+--.++-.|-+..++.+..++++.|.+..+ .+--..-
T Consensus 105 k~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqiv 184 (233)
T PF14669_consen 105 KPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIV 184 (233)
T ss_pred cCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhH
Confidence 111111222222222211111 1223456678888899999999998865422 3334567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 036275 183 TSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 183 ~~li~~~~~~g~~~~a~~~~~~ 204 (271)
|.....+.+.|..+.|..++++
T Consensus 185 n~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 185 NIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHcCCchHHHHHHhc
Confidence 8888999999999999999985
No 480
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.52 E-value=1.1e+02 Score=21.25 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHh
Q 036275 127 KMEEVLTAMEKGSYAAD-ISTYNILINIYGRGGFIEKMEGLFQS 169 (271)
Q Consensus 127 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 169 (271)
.+.++|..|...|+-.. ..-|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777665443 45566666677777777777777753
No 481
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.48 E-value=2.1e+02 Score=24.57 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=40.0
Q ss_pred HHHHHHHHHc---CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCC
Q 036275 147 YNILINIYGR---GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL-----YRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 147 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~~ 211 (271)
...++.++.+ ..+.+.|...+..|.+.|..|....-..++.++-..|. ..-|...++....-|.+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 3445555554 47889999999999988877765555555555444443 22344555555566643
No 482
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=43.31 E-value=85 Score=19.91 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhc
Q 036275 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEK 258 (271)
Q Consensus 197 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (271)
.+..+++.+.+.| ..+...|..+-. ..-..++|.+++.-+...|......+.+++.+.
T Consensus 16 ~v~~ilD~L~~~~-Vit~e~~~~I~a---~~T~~~kar~Lld~l~~kG~~A~~~F~~~L~e~ 73 (82)
T cd08330 16 NVDPILDKLHGKK-VITQEQYSEVRA---EKTNQEKMRKLFSFVRSWGASCKDIFYQILREE 73 (82)
T ss_pred hHHHHHHHHHHCC-CCCHHHHHHHHc---CCCcHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4566788888887 456666666543 446688899999999888888888888877543
No 483
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.11 E-value=1.1e+02 Score=21.21 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 036275 197 RCLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVR 238 (271)
Q Consensus 197 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 238 (271)
.+..+|..|...|+--. ...|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555443322 3344444555555566666655554
No 484
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.52 E-value=2.5e+02 Score=25.09 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=40.3
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHccCCHhHHHHHHH
Q 036275 67 RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-------------KPDTFVINSMLNLYGRLGQFEKMEEVLT 133 (271)
Q Consensus 67 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 133 (271)
+.|+..+......++.. ..|+...|+.++++....|- .++......++++. ..++.+.+..+++
T Consensus 193 ~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~~~d~~~~l~~~~ 269 (509)
T PRK14958 193 EENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-AAKAGDRLLGCVT 269 (509)
T ss_pred HcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 34555555555544433 24677777777766554320 11222233344443 3366777777777
Q ss_pred HHHhCCCCCC
Q 036275 134 AMEKGSYAAD 143 (271)
Q Consensus 134 ~m~~~~~~~~ 143 (271)
++...|..+.
T Consensus 270 ~l~~~g~~~~ 279 (509)
T PRK14958 270 RLVEQGVDFS 279 (509)
T ss_pred HHHHcCCCHH
Confidence 7777776553
No 485
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=42.10 E-value=1.5e+02 Score=22.52 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=21.3
Q ss_pred HHHHHhhcCchHHHHHH-hcCHHHHHHHHHHHHH
Q 036275 35 INFLLLQHTPNLFVFIF-SIYFSDAHAVFEEMKR 67 (271)
Q Consensus 35 ~~f~~~~~~y~~ll~~~-~g~~~~A~~~~~~~~~ 67 (271)
.+-..+.......|.+. .|++++|.+-++++.+
T Consensus 24 ~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 24 KLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444455666666 8888888888777754
No 486
>PRK14700 recombination factor protein RarA; Provisional
Probab=41.35 E-value=2e+02 Score=23.61 Aligned_cols=22 Identities=9% Similarity=-0.186 Sum_probs=14.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 036275 46 LFVFIFSIYFSDAHAVFEEMKR 67 (271)
Q Consensus 46 ~ll~~~~g~~~~A~~~~~~~~~ 67 (271)
.++....|+...|+..++.+..
T Consensus 72 ~ia~~a~GDaR~aLN~LE~a~~ 93 (300)
T PRK14700 72 AMHNYNEGDCRKILNLLERMFL 93 (300)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh
Confidence 3333338888888888887543
No 487
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.72 E-value=1.2e+02 Score=20.70 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=8.4
Q ss_pred hcCHHHHHHHHHHHHHcC
Q 036275 52 SIYFSDAHAVFEEMKRLG 69 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~ 69 (271)
....++|..+.+.+...+
T Consensus 19 ~HcH~EA~tIa~wL~~~~ 36 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG 36 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 334455555555554443
No 488
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=40.71 E-value=36 Score=25.84 Aligned_cols=60 Identities=15% Similarity=0.344 Sum_probs=37.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
.+.....++.-|...|+.+..+++.-.+--. .--.+.++..|.+.|-++.-.-++.+...
T Consensus 21 pp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~-----~LDidq~i~lC~~~~LydalIYv~n~~l~ 80 (196)
T PF12816_consen 21 PPEVFKALVEHYASKGRLERLEQLILHLDPS-----SLDIDQVIKLCKKHGLYDALIYVWNRALN 80 (196)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHH-----hcCHHHHHHHHHHCCCCCeeeeeeecccc
Confidence 4566677777777777777777777666433 22345666666666666655555555443
No 489
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.18 E-value=3.5e+02 Score=26.10 Aligned_cols=184 Identities=8% Similarity=0.032 Sum_probs=105.1
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHH---
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLG---ITPTMKSHMLLLTAYSKTGNV--AKCEGVINQMHKSGLKPDTFVIN--- 113 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~--- 113 (271)
|..|+..| .|..++|+++|.+..... ..--...+..++.-.-+.+.. +..+++-+-.......-....++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 99999999 999999999999997632 111233344455555555544 55555444444332111111111
Q ss_pred ---------HHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC--------HHHHHHH-----HHhch
Q 036275 114 ---------SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF--------IEKMEGL-----FQSLP 171 (271)
Q Consensus 114 ---------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--------~~~a~~~-----~~~m~ 171 (271)
.-+-.|......+-+..+++.+....-.++....+.++..|++.=+ .+++.+. +..+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 1233456677788889999998877656677777888877764321 2233333 11111
Q ss_pred h--CCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------CCCCCHHHHHHHHHHHhcc
Q 036275 172 A--KRLKPD--------VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-------------GCYPDGGTAKVLISACSSE 227 (271)
Q Consensus 172 ~--~g~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------~~~p~~~~~~~l~~~~~~~ 227 (271)
+ ....|. ...|...--.+.+.|+.++|..++-..... ...++...|..+++.+...
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 1 112222 223333333344788888888877654431 1234777888888887766
No 490
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=39.83 E-value=1.9e+02 Score=28.12 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=47.5
Q ss_pred HcCCCHHHHHHHHHhchhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036275 155 GRGGFIEKMEGLFQSLPAKRLKPDVV-TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 219 (271)
-....+.+++++|..|...|+.+... .|-..-..+.+.+.+.+|..+|+..++....|-...-..
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~ 154 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQ 154 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 35667888888999888888776654 455555667778888888888888887766776654333
No 491
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=39.76 E-value=2e+02 Score=23.08 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC------
Q 036275 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG------ 123 (271)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g------ 123 (271)
+...|.+.|....+.|.+ .....|...|.. ..+..+|..+|++..+.|..+...+...+-..|....
T Consensus 92 ~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 355555555554444421 222233333333 2255555555555555553322222223333332221
Q ss_pred -CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCC
Q 036275 124 -QFEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKR 174 (271)
Q Consensus 124 -~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 174 (271)
+...|...+.+.-..+ +......+...|.. ..+.++|...|....+.|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 1224555555555544 23333333333322 224455555555555544
No 492
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=39.36 E-value=95 Score=28.10 Aligned_cols=103 Identities=12% Similarity=-0.116 Sum_probs=58.7
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220 (271)
Q Consensus 141 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 220 (271)
.|-..+.|...-.+--.|+...|.+.+.........-..+..-.|.....+.|....|..++.+-+... ....-++-.+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 343334443333334467777777777765543211122334444455555566667777776655543 3334456666
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcc
Q 036275 221 ISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 221 ~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
.+++....++++|.+.|++..+..
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcC
Confidence 777777778888888888766543
No 493
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.34 E-value=4.1e+02 Score=26.68 Aligned_cols=155 Identities=9% Similarity=-0.049 Sum_probs=88.5
Q ss_pred HHhcCChHHHHH------HHH-HHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH-------HhCCCCCChhhHHH
Q 036275 84 YSKTGNVAKCEG------VIN-QMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM-------EKGSYAADISTYNI 149 (271)
Q Consensus 84 ~~~~~~~~~a~~------~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-------~~~~~~~~~~~~~~ 149 (271)
....|.+.++.+ ++. .|.... +....-|..+-..+.+.|+.++|+..-... ....-+-+...|..
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h-~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLH-PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcc-hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 444555665555 443 222221 334456777888888888888887654322 11121234556666
Q ss_pred HHHHHHcCCCHHHHHHHHHhchhC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHH
Q 036275 150 LINIYGRGGFIEKMEGLFQSLPAK-----R-LKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-------YPDGG 215 (271)
Q Consensus 150 li~~~~~~g~~~~a~~~~~~m~~~-----g-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------~p~~~ 215 (271)
+.......+....|...+.+.+.. | ..|. ..+++.+-..+...++++.|.+.++....... -.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666666777777777765532 1 1333 33444444444455778888887777654211 13455
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHH
Q 036275 216 TAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 216 ~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
++..+.+.+...+++..|....+.
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhh
Confidence 677777777777777776655443
No 494
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=39.25 E-value=1.4e+02 Score=23.11 Aligned_cols=82 Identities=11% Similarity=0.166 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHccC---------CHhHHHHHHHHHHhCCCCC-ChhhHHHHHH
Q 036275 90 VAKCEGVINQMHKSGL-------KPDTFVINSMLNLYGRLG---------QFEKMEEVLTAMEKGSYAA-DISTYNILIN 152 (271)
Q Consensus 90 ~~~a~~~~~~m~~~~~-------~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~~~~~-~~~~~~~li~ 152 (271)
.+.|..++.+|--..+ .-...-|..+..+|++.| +.+-..++++...+.|++. =+..|+.+|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 5677777777753321 124455778888888776 3444555556666666542 2345666665
Q ss_pred HHHcCCCHHHHHHHHHhch
Q 036275 153 IYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~ 171 (271)
--.-.-+.++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 5555555666666665543
No 495
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=39.09 E-value=3e+02 Score=24.93 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=77.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHH
Q 036275 87 TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD-ISTYNILINIYGRGGFIEKMEG 165 (271)
Q Consensus 87 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~ 165 (271)
.|++++|+...++....+-..-+.-..+.+.-++.....+.-...+++..+.+ |+ ..+..-++..+.. ...+.+
T Consensus 322 ~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~--P~~~~~le~l~~~~~~---~~~~~~ 396 (547)
T PF14929_consen 322 GGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKD--PTMSYSLERLILLHQK---DYSAEQ 396 (547)
T ss_pred cccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCC--CcHHHHHHHHHhhhhh---HHHHHH
Confidence 37788887777766554322112222223333334446677778888887763 44 3333444444333 455666
Q ss_pred HHHhc-hhCCCCCCHHHHHHHHHHHHh-cC-------CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCc
Q 036275 166 LFQSL-PAKRLKPDVVTWTSRLAAYSR-KK-------LYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQ 229 (271)
Q Consensus 166 ~~~~m-~~~g~~~~~~~~~~li~~~~~-~g-------~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~ 229 (271)
+++-+ ....+.|+..+|-.+...+.+ .+ +...+.+++=.+++ .+.+-|..+|..+.....+.-+
T Consensus 397 Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~ 470 (547)
T PF14929_consen 397 LLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFD 470 (547)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhh
Confidence 66644 234455888888888888877 22 33345555555554 4556676777776655443333
No 496
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=37.82 E-value=1.5e+02 Score=25.89 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 036275 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192 (271)
Q Consensus 113 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 192 (271)
..|+.-|...|+..+|...+.++--- +.....++.+++.+.-+.|+-...++++++.-.. ...|-+.|-++|.+.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhh
Q ss_pred CC
Q 036275 193 KL 194 (271)
Q Consensus 193 g~ 194 (271)
.+
T Consensus 588 ~d 589 (645)
T KOG0403|consen 588 YD 589 (645)
T ss_pred hc
No 497
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.45 E-value=2.1e+02 Score=22.77 Aligned_cols=117 Identities=9% Similarity=-0.097 Sum_probs=68.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcCCCHH
Q 036275 84 YSKTGNVAKCEGVINQMHKSGLKPDTFV-INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI-STYNILINIYGRGGFIE 161 (271)
Q Consensus 84 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~ 161 (271)
|...++++.|+.-|.+.+.. .|+..+ |+.-+..+.+..+++.+..=-...++. .|+. ...-.+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 55556677777766555543 566633 555666677777777776555555443 4443 34445566666777788
Q ss_pred HHHHHHHhch----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275 162 KMEGLFQSLP----AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 162 ~a~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (271)
+|...+.+.. ...+.|.......|..+--..-...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8887777763 233444455566666554444444455554444
No 498
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=37.36 E-value=1.3e+02 Score=20.46 Aligned_cols=97 Identities=19% Similarity=0.078 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 205 (271)
+.+..+++.+.+.|+-.|..-....+....+.+.+ ....+-.++.+.|+ +..+....+. .....+.|.++...-
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~-G~~~I~~~L~~kGi--~~~~i~~~l~---~~~~~e~a~~~~~kk 82 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGK-GPRRIRQKLKQKGI--DREIIEEALE---EYDEEEEALELAEKK 82 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT----HHHHHHHHT---CS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccc-cHHHHHHHHHHHCC--ChHHHHHHHH---HhhHHHHHHHHHHHH
Q ss_pred HHCC-CCCCHHHHHHHHHHHhccC
Q 036275 206 IDAG-CYPDGGTAKVLISACSSED 228 (271)
Q Consensus 206 ~~~~-~~p~~~~~~~l~~~~~~~g 228 (271)
.... -.++.....-+++.+.+.|
T Consensus 83 ~~~~~~~~~~~~~~K~~~~L~rrG 106 (121)
T PF02631_consen 83 YRRYRKPSDRKRKQKLIRFLMRRG 106 (121)
T ss_dssp HHHTTTS-CHHHHHHHHHHHHHTT
T ss_pred HhcccCCCCHHHHHHHHHHHHHCC
No 499
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.13 E-value=2.7e+02 Score=23.83 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=38.9
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHh--cCChHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKS----HMLLLTAYSK--TGNVAKCEGVINQ 99 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~--~~~~~~a~~~~~~ 99 (271)
+......+ .+++..|.++|+++.++..++.... |..+..+|.. .-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 55666777 9999999999999998865555443 3334444433 3567788888875
No 500
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.35 E-value=2.6e+02 Score=23.42 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHh----CCCCCChhhHHHHHHHHHc-CCCHHHHHHHHHhchhCCCCCCH----H
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEK----GSYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDV----V 180 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~----~ 180 (271)
..+-.....|++.|+.+.|.+.+....+ .|.+.|+..+.+-+..+.. ..-..+-.+..+.+.+.|..-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4566778889999999999988776544 4667777766554444332 22234445555555555543222 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
+|..+-. ...+++.+|-.+|-+.+.
T Consensus 185 vY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 4444332 345678888888877553
Done!