Query 036275
Match_columns 271
No_of_seqs 341 out of 1592
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 19:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 7.6E-36 2.6E-40 256.0 24.3 184 44-227 29-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.1E-35 7.2E-40 253.3 23.3 204 56-259 7-224 (501)
3 2xpi_A Anaphase-promoting comp 99.9 9.3E-22 3.2E-26 172.6 26.5 213 52-268 352-573 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.4E-21 4.9E-26 171.4 24.3 233 32-269 290-540 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 5.6E-22 1.9E-26 176.6 9.2 147 109-259 127-286 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.9 9.2E-22 3.1E-26 175.3 9.5 151 73-228 126-286 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.8 2E-17 6.9E-22 137.6 27.8 220 44-268 138-362 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.8 5E-17 1.7E-21 135.3 25.8 221 44-268 70-328 (388)
9 2y4t_A DNAJ homolog subfamily 99.8 2.6E-17 9E-22 139.3 23.1 221 44-269 29-281 (450)
10 2y4t_A DNAJ homolog subfamily 99.8 7.7E-17 2.6E-21 136.4 25.3 220 44-268 63-318 (450)
11 4eqf_A PEX5-related protein; a 99.8 6.9E-17 2.4E-21 133.3 21.3 222 44-269 68-305 (365)
12 2pl2_A Hypothetical conserved 99.8 2.8E-16 9.7E-21 120.5 20.6 192 44-241 8-212 (217)
13 3hym_B Cell division cycle pro 99.8 1E-15 3.6E-20 123.9 25.0 222 44-269 59-294 (330)
14 1fch_A Peroxisomal targeting s 99.7 3.8E-15 1.3E-19 122.6 27.1 219 46-268 69-353 (368)
15 3hym_B Cell division cycle pro 99.7 1.6E-15 5.4E-20 122.8 24.1 221 44-269 25-260 (330)
16 4eqf_A PEX5-related protein; a 99.7 5.6E-16 1.9E-20 127.8 20.5 229 33-267 84-349 (365)
17 3cv0_A Peroxisome targeting si 99.7 1.2E-15 4E-20 123.4 21.7 221 44-269 58-310 (327)
18 3ieg_A DNAJ homolog subfamily 99.7 5.5E-15 1.9E-19 120.8 25.4 220 45-269 7-258 (359)
19 2ho1_A Type 4 fimbrial biogene 99.7 5.8E-15 2E-19 115.2 24.1 201 44-248 40-243 (252)
20 2pl2_A Hypothetical conserved 99.7 1.6E-15 5.5E-20 116.3 20.2 194 71-269 2-209 (217)
21 1b89_A Protein (clathrin heavy 99.7 5.8E-18 2E-22 140.3 5.9 206 32-268 21-230 (449)
22 3cv0_A Peroxisome targeting si 99.7 3.3E-15 1.1E-19 120.8 22.1 219 45-268 25-263 (327)
23 2vq2_A PILW, putative fimbrial 99.7 2.6E-14 8.8E-19 109.2 25.6 201 44-247 11-215 (225)
24 3ieg_A DNAJ homolog subfamily 99.7 2.9E-14 1E-18 116.5 26.9 221 44-268 40-295 (359)
25 3mkr_A Coatomer subunit epsilo 99.7 4.7E-15 1.6E-19 118.9 21.3 206 52-268 78-288 (291)
26 2q7f_A YRRB protein; TPR, prot 99.7 3.7E-15 1.3E-19 115.5 20.2 203 44-251 26-230 (243)
27 3mkr_A Coatomer subunit epsilo 99.7 1.1E-14 3.7E-19 116.8 22.9 210 46-268 39-257 (291)
28 3uq3_A Heat shock protein STI1 99.7 1.3E-14 4.4E-19 113.3 22.4 197 44-244 8-237 (258)
29 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.5E-15 1.2E-19 117.8 17.2 219 44-268 46-269 (275)
30 2ho1_A Type 4 fimbrial biogene 99.6 7.8E-14 2.7E-18 108.8 22.0 192 74-268 37-232 (252)
31 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.6E-18 108.6 23.6 214 52-269 16-245 (272)
32 1ouv_A Conserved hypothetical 99.6 1E-12 3.5E-17 103.9 28.7 210 44-268 9-245 (273)
33 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.6E-14 5.5E-19 113.9 17.8 212 52-269 18-239 (275)
34 1fch_A Peroxisomal targeting s 99.6 4.5E-14 1.6E-18 116.2 21.0 214 52-268 38-308 (368)
35 2gw1_A Mitochondrial precursor 99.6 2.4E-14 8.2E-19 122.9 20.0 221 44-269 240-473 (514)
36 2gw1_A Mitochondrial precursor 99.6 8.5E-14 2.9E-18 119.5 23.0 154 111-268 239-395 (514)
37 2vq2_A PILW, putative fimbrial 99.6 1.8E-13 6E-18 104.5 22.3 195 71-268 5-205 (225)
38 2q7f_A YRRB protein; TPR, prot 99.6 6.5E-14 2.2E-18 108.4 17.0 194 72-269 21-217 (243)
39 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4.1E-18 107.7 18.2 194 73-269 4-231 (258)
40 3vtx_A MAMA; tetratricopeptide 99.6 7.2E-13 2.5E-17 98.4 21.1 169 73-245 4-172 (184)
41 3fp2_A TPR repeat-containing p 99.6 9.5E-13 3.2E-17 113.7 24.7 220 44-268 62-401 (537)
42 3fp2_A TPR repeat-containing p 99.6 5.2E-13 1.8E-17 115.3 22.8 213 52-269 256-486 (537)
43 4abn_A Tetratricopeptide repea 99.6 2.3E-13 8E-18 116.3 19.7 209 54-268 83-315 (474)
44 2h6f_A Protein farnesyltransfe 99.6 4.8E-13 1.6E-17 111.0 20.0 219 44-268 100-341 (382)
45 3vtx_A MAMA; tetratricopeptide 99.6 2E-12 7E-17 95.9 20.9 165 44-214 8-174 (184)
46 1b89_A Protein (clathrin heavy 99.5 1.8E-15 6.3E-20 125.5 3.1 184 52-267 16-199 (449)
47 2ond_A Cleavage stimulation fa 99.5 5.5E-12 1.9E-16 101.7 23.1 187 56-246 81-273 (308)
48 3nf1_A KLC 1, kinesin light ch 99.5 7.7E-13 2.6E-17 106.0 17.7 164 44-207 30-223 (311)
49 4abn_A Tetratricopeptide repea 99.5 6.4E-13 2.2E-17 113.6 17.9 192 44-240 105-318 (474)
50 2ond_A Cleavage stimulation fa 99.5 1.6E-11 5.6E-16 98.9 23.3 193 72-268 48-264 (308)
51 3as5_A MAMA; tetratricopeptide 99.5 4.1E-12 1.4E-16 93.7 18.3 167 74-244 8-174 (186)
52 1ouv_A Conserved hypothetical 99.5 4.1E-11 1.4E-15 94.6 24.9 184 52-250 55-258 (273)
53 3u4t_A TPR repeat-containing p 99.5 9.4E-12 3.2E-16 97.9 20.6 203 44-249 40-256 (272)
54 3as5_A MAMA; tetratricopeptide 99.5 7.9E-12 2.7E-16 92.1 17.9 161 44-208 11-173 (186)
55 3nf1_A KLC 1, kinesin light ch 99.4 2.2E-12 7.5E-17 103.3 14.8 172 71-242 24-223 (311)
56 2h6f_A Protein farnesyltransfe 99.4 3.4E-11 1.2E-15 99.8 21.5 197 44-246 134-351 (382)
57 3edt_B KLC 2, kinesin light ch 99.4 1.8E-12 6.2E-17 102.2 13.2 136 72-207 41-197 (283)
58 4i17_A Hypothetical protein; T 99.4 4E-11 1.4E-15 92.0 20.5 186 52-249 20-215 (228)
59 4gyw_A UDP-N-acetylglucosamine 99.4 8.4E-12 2.9E-16 111.4 18.7 166 73-242 8-173 (723)
60 4gyw_A UDP-N-acetylglucosamine 99.4 2.4E-11 8.3E-16 108.5 19.4 159 44-207 12-173 (723)
61 4a1s_A PINS, partner of inscut 99.4 6.3E-12 2.2E-16 105.0 13.0 216 52-268 61-326 (411)
62 4a1s_A PINS, partner of inscut 99.4 8.5E-12 2.9E-16 104.2 13.0 226 44-269 89-367 (411)
63 4i17_A Hypothetical protein; T 99.4 4.2E-10 1.5E-14 86.3 21.5 155 72-230 5-169 (228)
64 3ulq_A Response regulator aspa 99.4 3.4E-11 1.2E-15 99.9 16.3 218 52-269 116-363 (383)
65 2ooe_A Cleavage stimulation fa 99.3 4.2E-10 1.4E-14 97.5 22.8 207 56-267 255-485 (530)
66 3mv2_B Coatomer subunit epsilo 99.3 1E-10 3.6E-15 93.0 16.9 204 58-269 85-307 (310)
67 1qqe_A Vesicular transport pro 99.3 8.9E-11 3E-15 93.9 15.4 202 44-247 40-273 (292)
68 2xm6_A Protein corresponding t 99.3 4.8E-09 1.6E-13 89.9 27.0 177 53-244 57-253 (490)
69 2fo7_A Synthetic consensus TPR 99.3 3.4E-10 1.2E-14 78.6 15.9 129 76-207 3-131 (136)
70 2fo7_A Synthetic consensus TPR 99.3 4.2E-10 1.4E-14 78.1 16.3 127 44-173 4-132 (136)
71 3ro2_A PINS homolog, G-protein 99.3 5.4E-11 1.8E-15 95.9 13.3 225 44-268 46-326 (338)
72 3sf4_A G-protein-signaling mod 99.3 9.5E-11 3.2E-15 97.3 14.7 216 52-268 22-290 (406)
73 1xi4_A Clathrin heavy chain; a 99.3 1.2E-09 4E-14 101.4 22.8 194 44-268 1108-1303(1630)
74 3ro2_A PINS homolog, G-protein 99.3 4.9E-11 1.7E-15 96.1 12.6 216 52-268 18-286 (338)
75 2xm6_A Protein corresponding t 99.3 7.4E-09 2.5E-13 88.7 26.8 202 52-268 92-319 (490)
76 2pzi_A Probable serine/threoni 99.3 1.8E-10 6.1E-15 102.8 17.0 188 47-241 398-603 (681)
77 3rjv_A Putative SEL1 repeat pr 99.3 4.5E-09 1.5E-13 79.9 22.5 186 56-253 3-207 (212)
78 3q15_A PSP28, response regulat 99.3 5.6E-10 1.9E-14 92.4 18.3 217 52-269 114-360 (378)
79 3sf4_A G-protein-signaling mod 99.3 3E-11 1E-15 100.3 10.6 225 44-268 50-330 (406)
80 1qqe_A Vesicular transport pro 99.2 4.2E-10 1.4E-14 89.9 16.1 200 54-268 32-263 (292)
81 2ooe_A Cleavage stimulation fa 99.2 1.8E-09 6E-14 93.5 21.1 189 53-245 293-494 (530)
82 3edt_B KLC 2, kinesin light ch 99.2 1.4E-10 4.7E-15 91.3 13.0 199 44-243 46-281 (283)
83 3urz_A Uncharacterized protein 99.2 9.1E-10 3.1E-14 83.5 17.1 162 52-220 17-196 (208)
84 3qky_A Outer membrane assembly 99.2 1E-09 3.6E-14 86.0 18.0 172 73-247 14-228 (261)
85 3qky_A Outer membrane assembly 99.2 6.7E-10 2.3E-14 87.1 16.8 163 44-208 19-224 (261)
86 3ulq_A Response regulator aspa 99.2 3.4E-10 1.2E-14 93.8 14.6 189 80-268 109-329 (383)
87 4g1t_A Interferon-induced prot 99.2 3.2E-08 1.1E-12 84.0 25.5 204 44-250 54-283 (472)
88 2vsy_A XCC0866; transferase, g 99.2 1.1E-09 3.7E-14 95.7 16.8 154 52-209 2-158 (568)
89 1hz4_A MALT regulatory protein 99.2 5.7E-09 1.9E-13 86.0 19.4 192 52-243 66-282 (373)
90 1hz4_A MALT regulatory protein 99.1 3.9E-09 1.3E-13 87.0 17.6 216 52-267 27-275 (373)
91 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.7E-09 1.9E-13 80.0 17.3 182 44-246 8-216 (225)
92 3urz_A Uncharacterized protein 99.1 2.5E-09 8.7E-14 81.0 14.9 169 73-247 3-190 (208)
93 2vsy_A XCC0866; transferase, g 99.1 2.6E-09 8.9E-14 93.3 16.9 158 87-248 2-162 (568)
94 3qou_A Protein YBBN; thioredox 99.1 5.3E-09 1.8E-13 83.3 16.9 159 106-268 114-278 (287)
95 1xi4_A Clathrin heavy chain; a 99.1 3.2E-08 1.1E-12 92.1 22.8 165 74-264 1105-1269(1630)
96 2r5s_A Uncharacterized protein 99.1 1.7E-09 5.8E-14 79.6 11.9 151 52-206 19-171 (176)
97 3q15_A PSP28, response regulat 99.1 6.1E-09 2.1E-13 86.2 16.3 196 44-243 144-365 (378)
98 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.4E-08 8.4E-13 76.4 18.6 143 44-209 44-214 (225)
99 3qou_A Protein YBBN; thioredox 99.1 5.2E-09 1.8E-13 83.4 14.6 167 71-241 114-282 (287)
100 4ga2_A E3 SUMO-protein ligase 99.1 1.5E-09 5.2E-14 77.8 10.3 118 52-172 10-128 (150)
101 4g1t_A Interferon-induced prot 99.0 5.2E-09 1.8E-13 88.9 14.6 213 52-268 188-453 (472)
102 3mv2_B Coatomer subunit epsilo 99.0 2.3E-08 7.8E-13 79.6 17.2 146 93-243 85-240 (310)
103 2pzi_A Probable serine/threoni 99.0 3.4E-09 1.2E-13 94.5 13.9 171 85-260 402-583 (681)
104 4ga2_A E3 SUMO-protein ligase 99.0 1.1E-09 3.9E-14 78.4 8.4 144 81-229 4-149 (150)
105 2ifu_A Gamma-SNAP; membrane fu 99.0 1.5E-08 5.2E-13 81.4 14.7 162 44-206 39-222 (307)
106 2r5s_A Uncharacterized protein 99.0 1.2E-08 4E-13 75.1 12.9 161 76-241 8-171 (176)
107 1hh8_A P67PHOX, NCF-2, neutrop 99.0 9.3E-08 3.2E-12 72.1 17.4 124 80-208 12-150 (213)
108 3u3w_A Transcriptional activat 98.9 1.3E-07 4.4E-12 75.4 18.8 163 80-242 81-265 (293)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.9 9.7E-08 3.3E-12 72.0 16.4 124 45-174 11-151 (213)
110 3rjv_A Putative SEL1 repeat pr 98.9 3.5E-07 1.2E-11 69.3 19.4 157 44-209 21-198 (212)
111 3e4b_A ALGK; tetratricopeptide 98.9 1.8E-06 6.3E-11 73.1 25.7 194 44-253 179-397 (452)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 4.2E-08 1.5E-12 78.8 14.7 177 52-245 29-225 (307)
113 1a17_A Serine/threonine protei 98.9 1.4E-07 4.9E-12 67.8 15.8 95 76-172 15-109 (166)
114 2e2e_A Formate-dependent nitri 98.9 2.2E-08 7.5E-13 73.5 11.4 119 52-173 23-144 (177)
115 1a17_A Serine/threonine protei 98.9 1.5E-07 5.1E-12 67.8 15.5 131 109-242 13-145 (166)
116 3u3w_A Transcriptional activat 98.9 5.4E-07 1.9E-11 71.7 20.1 199 61-268 33-260 (293)
117 4f3v_A ESX-1 secretion system 98.9 3.1E-07 1.1E-11 72.1 17.7 191 52-246 19-240 (282)
118 3e4b_A ALGK; tetratricopeptide 98.9 9.8E-07 3.3E-11 74.8 22.1 178 54-248 160-356 (452)
119 3dra_A Protein farnesyltransfe 98.9 9.4E-07 3.2E-11 70.7 20.7 209 55-268 49-281 (306)
120 2qfc_A PLCR protein; TPR, HTH, 98.9 5.2E-07 1.8E-11 71.8 19.3 167 75-241 76-264 (293)
121 1na0_A Designed protein CTPR3; 98.8 1.7E-07 5.8E-12 63.7 13.9 95 75-171 10-104 (125)
122 1na0_A Designed protein CTPR3; 98.8 2.5E-07 8.4E-12 62.9 14.7 114 109-225 9-122 (125)
123 4gco_A Protein STI-1; structur 98.8 1.4E-07 4.6E-12 65.4 12.7 94 77-172 16-109 (126)
124 3gw4_A Uncharacterized protein 98.8 5.5E-08 1.9E-12 72.6 11.5 154 52-206 5-174 (203)
125 2lni_A Stress-induced-phosphop 98.8 1.7E-07 5.9E-12 64.6 13.2 98 73-172 15-112 (133)
126 4gco_A Protein STI-1; structur 98.8 2.9E-07 1E-11 63.6 14.2 97 110-208 14-110 (126)
127 3gw4_A Uncharacterized protein 98.8 6.3E-08 2.1E-12 72.3 11.5 157 85-242 3-175 (203)
128 3gyz_A Chaperone protein IPGC; 98.8 1.1E-07 3.8E-12 68.1 12.2 95 111-207 38-132 (151)
129 2qfc_A PLCR protein; TPR, HTH, 98.8 9.9E-07 3.4E-11 70.2 19.0 162 44-206 78-264 (293)
130 2vyi_A SGTA protein; chaperone 98.8 1.4E-07 4.9E-12 64.7 12.1 117 74-193 12-128 (131)
131 2lni_A Stress-induced-phosphop 98.8 2.4E-07 8.4E-12 63.9 13.1 116 108-226 15-130 (133)
132 2vyi_A SGTA protein; chaperone 98.8 3.7E-07 1.3E-11 62.6 13.5 114 44-160 15-130 (131)
133 1p5q_A FKBP52, FK506-binding p 98.8 4E-07 1.4E-11 74.1 15.7 131 73-205 146-291 (336)
134 2vgx_A Chaperone SYCD; alterna 98.7 4.8E-08 1.7E-12 69.7 8.7 95 75-171 22-116 (148)
135 3gyz_A Chaperone protein IPGC; 98.7 3.9E-07 1.3E-11 65.2 13.3 103 73-179 35-137 (151)
136 2c2l_A CHIP, carboxy terminus 98.7 5.8E-08 2E-12 77.1 9.9 186 46-242 9-198 (281)
137 2e2e_A Formate-dependent nitri 98.7 1.2E-07 4.2E-12 69.4 10.9 121 85-208 21-144 (177)
138 3dra_A Protein farnesyltransfe 98.7 1.4E-05 4.8E-10 63.9 22.6 201 44-248 70-292 (306)
139 3upv_A Heat shock protein STI1 98.7 6E-07 2.1E-11 61.7 13.0 96 75-172 5-100 (126)
140 1p5q_A FKBP52, FK506-binding p 98.7 6.8E-07 2.3E-11 72.8 14.8 150 88-242 127-293 (336)
141 4e6h_A MRNA 3'-END-processing 98.7 1.1E-06 3.9E-11 77.8 16.7 193 52-247 356-574 (679)
142 2c2l_A CHIP, carboxy terminus 98.7 1.8E-07 6.3E-12 74.1 10.6 165 72-246 2-167 (281)
143 4e6h_A MRNA 3'-END-processing 98.7 2.9E-06 1E-10 75.2 19.1 209 55-267 325-563 (679)
144 2kck_A TPR repeat; tetratricop 98.6 7.4E-07 2.5E-11 59.3 11.6 98 74-173 6-106 (112)
145 1elw_A TPR1-domain of HOP; HOP 98.6 2.5E-06 8.4E-11 57.2 14.3 94 76-171 6-99 (118)
146 2vgx_A Chaperone SYCD; alterna 98.6 1.8E-07 6.3E-12 66.6 8.8 97 109-207 21-117 (148)
147 2kck_A TPR repeat; tetratricop 98.6 7.4E-07 2.5E-11 59.3 11.4 100 144-245 6-108 (112)
148 3upv_A Heat shock protein STI1 98.6 1.5E-06 5.3E-11 59.6 13.1 98 109-208 4-101 (126)
149 1elw_A TPR1-domain of HOP; HOP 98.6 3.9E-06 1.3E-10 56.2 14.9 106 44-152 7-114 (118)
150 2fbn_A 70 kDa peptidylprolyl i 98.6 8E-08 2.7E-12 71.9 6.8 88 145-234 89-176 (198)
151 2xcb_A PCRH, regulatory protei 98.6 2.8E-07 9.6E-12 65.0 9.2 92 78-171 22-113 (142)
152 4gcn_A Protein STI-1; structur 98.6 1E-06 3.4E-11 61.0 11.8 95 76-171 10-110 (127)
153 4b4t_Q 26S proteasome regulato 98.6 5.5E-06 1.9E-10 69.3 18.5 191 52-242 17-244 (434)
154 1elr_A TPR2A-domain of HOP; HO 98.6 6.8E-07 2.3E-11 61.3 10.9 97 75-172 5-107 (131)
155 4gcn_A Protein STI-1; structur 98.6 1.4E-06 4.7E-11 60.3 12.3 107 110-219 9-121 (127)
156 3q49_B STIP1 homology and U bo 98.6 1.8E-06 6.1E-11 60.0 12.9 97 73-171 8-104 (137)
157 2fbn_A 70 kDa peptidylprolyl i 98.6 1.9E-06 6.5E-11 64.3 13.6 153 52-207 17-185 (198)
158 1elr_A TPR2A-domain of HOP; HO 98.5 8.3E-07 2.8E-11 60.8 10.0 111 109-222 4-120 (131)
159 3q7a_A Farnesyltransferase alp 98.5 1.3E-05 4.4E-10 65.0 18.1 172 52-228 67-256 (349)
160 2dba_A Smooth muscle cell asso 98.5 8.5E-06 2.9E-10 57.1 15.4 96 109-207 28-127 (148)
161 2dba_A Smooth muscle cell asso 98.5 4.5E-06 1.5E-10 58.6 13.9 99 72-173 26-128 (148)
162 3sz7_A HSC70 cochaperone (SGT) 98.5 2.1E-06 7.4E-11 61.9 12.4 98 73-172 10-107 (164)
163 3sz7_A HSC70 cochaperone (SGT) 98.5 3.4E-06 1.1E-10 60.9 13.4 99 108-208 10-108 (164)
164 1wao_1 Serine/threonine protei 98.5 2.5E-06 8.6E-11 72.8 14.6 114 52-168 19-134 (477)
165 3q49_B STIP1 homology and U bo 98.5 4.3E-06 1.5E-10 58.0 13.1 99 107-207 7-105 (137)
166 2xcb_A PCRH, regulatory protei 98.5 2.7E-06 9.4E-11 59.8 11.8 97 110-208 19-115 (142)
167 3ro3_A PINS homolog, G-protein 98.4 1.7E-06 6E-11 61.4 9.6 132 75-206 10-156 (164)
168 2xev_A YBGF; tetratricopeptide 98.4 2.2E-05 7.5E-10 53.7 14.3 85 52-138 15-105 (129)
169 1hxi_A PEX5, peroxisome target 98.4 3.2E-06 1.1E-10 57.8 9.8 22 183-204 89-110 (121)
170 4f3v_A ESX-1 secretion system 98.4 5.5E-06 1.9E-10 65.1 11.9 139 77-220 105-247 (282)
171 1hxi_A PEX5, peroxisome target 98.4 5.6E-06 1.9E-10 56.6 10.5 93 78-172 21-113 (121)
172 2xev_A YBGF; tetratricopeptide 98.3 8.1E-06 2.8E-10 55.9 11.3 92 80-173 8-105 (129)
173 3ro3_A PINS homolog, G-protein 98.3 3.7E-06 1.3E-10 59.7 9.6 134 110-243 10-158 (164)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.2E-05 4.2E-10 68.2 14.0 131 73-206 267-413 (457)
175 3q7a_A Farnesyltransferase alp 98.3 0.00026 9E-09 57.4 20.9 203 44-250 91-338 (349)
176 4b4t_Q 26S proteasome regulato 98.3 4.5E-05 1.5E-09 63.7 16.6 188 81-268 11-239 (434)
177 3rkv_A Putative peptidylprolyl 98.3 1.2E-05 4.1E-10 57.8 11.2 99 74-173 11-126 (162)
178 3k9i_A BH0479 protein; putativ 98.3 1.6E-06 5.3E-11 58.9 6.1 84 53-137 4-89 (117)
179 3n71_A Histone lysine methyltr 98.3 5.4E-06 1.9E-10 70.7 10.6 97 111-207 353-463 (490)
180 1ihg_A Cyclophilin 40; ppiase 98.3 1.7E-05 5.9E-10 65.3 13.1 96 76-172 225-335 (370)
181 1wao_1 Serine/threonine protei 98.2 3.3E-06 1.1E-10 72.1 8.7 120 82-204 14-135 (477)
182 3dss_A Geranylgeranyl transfer 98.2 0.00055 1.9E-08 55.2 21.0 199 44-247 29-271 (331)
183 3k9i_A BH0479 protein; putativ 98.2 2.9E-06 9.8E-11 57.6 6.6 83 123-206 4-88 (117)
184 1ihg_A Cyclophilin 40; ppiase 98.2 2E-05 7E-10 64.9 12.9 124 110-235 224-362 (370)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.2E-05 7.5E-10 66.6 13.2 126 44-172 271-414 (457)
186 1klx_A Cysteine rich protein B 98.2 7E-05 2.4E-09 52.4 13.8 111 53-174 9-127 (138)
187 2if4_A ATFKBP42; FKBP-like, al 98.2 8E-06 2.7E-10 66.4 10.0 61 111-172 232-292 (338)
188 3rkv_A Putative peptidylprolyl 98.2 2.8E-05 9.6E-10 55.8 11.4 99 109-208 11-126 (162)
189 1dce_A Protein (RAB geranylger 98.2 0.0004 1.4E-08 60.5 20.4 173 52-229 42-241 (567)
190 1klx_A Cysteine rich protein B 98.2 0.0001 3.4E-09 51.6 13.6 110 89-209 10-127 (138)
191 3n71_A Histone lysine methyltr 98.2 2E-05 7E-10 67.2 11.7 127 118-244 318-465 (490)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 9.7E-06 3.3E-10 66.0 8.9 97 146-245 232-330 (338)
193 2l6j_A TPR repeat-containing p 98.1 6.4E-06 2.2E-10 54.8 5.9 95 73-170 3-104 (111)
194 2hr2_A Hypothetical protein; a 98.1 6.4E-05 2.2E-09 53.6 11.0 97 75-171 12-129 (159)
195 3dss_A Geranylgeranyl transfer 98.1 0.0018 6.1E-08 52.2 20.7 187 55-248 90-309 (331)
196 1dce_A Protein (RAB geranylger 98.0 0.00098 3.4E-08 58.0 18.6 172 88-263 43-244 (567)
197 2l6j_A TPR repeat-containing p 97.9 0.0001 3.6E-09 48.7 9.4 65 143-208 3-67 (111)
198 2kat_A Uncharacterized protein 97.9 9.3E-05 3.2E-09 49.6 8.5 61 109-170 19-79 (115)
199 1na3_A Designed protein CTPR2; 97.9 0.00018 6E-09 45.6 9.4 63 75-138 10-72 (91)
200 1zu2_A Mitochondrial import re 97.9 9E-05 3.1E-09 52.8 8.5 93 52-148 15-128 (158)
201 2hr2_A Hypothetical protein; a 97.9 0.00026 8.9E-09 50.5 10.9 96 110-207 12-130 (159)
202 2kat_A Uncharacterized protein 97.8 0.00027 9.2E-09 47.3 10.5 80 57-138 3-82 (115)
203 2uy1_A Cleavage stimulation fa 97.8 0.0019 6.6E-08 55.2 17.1 196 55-264 195-403 (493)
204 1na3_A Designed protein CTPR2; 97.7 0.00042 1.4E-08 43.8 9.8 63 110-173 10-72 (91)
205 3ly7_A Transcriptional activat 97.6 0.0034 1.2E-07 51.0 15.2 169 44-221 167-350 (372)
206 1zu2_A Mitochondrial import re 97.6 0.00011 3.9E-09 52.2 5.6 86 86-173 14-120 (158)
207 3ma5_A Tetratricopeptide repea 97.5 0.0007 2.4E-08 44.1 8.6 62 109-171 7-68 (100)
208 3ma5_A Tetratricopeptide repea 97.5 0.00056 1.9E-08 44.6 8.0 63 73-136 6-68 (100)
209 2uy1_A Cleavage stimulation fa 97.5 0.013 4.3E-07 50.1 18.3 182 44-242 216-412 (493)
210 3qww_A SET and MYND domain-con 97.5 0.00042 1.5E-08 58.1 8.9 84 88-171 312-409 (433)
211 3qwp_A SET and MYND domain-con 97.3 0.0014 4.8E-08 55.0 9.8 90 82-171 295-398 (429)
212 3qww_A SET and MYND domain-con 97.3 0.00064 2.2E-08 57.0 7.6 85 123-207 312-410 (433)
213 3mkq_A Coatomer beta'-subunit; 97.2 0.0055 1.9E-07 55.4 13.3 150 52-240 612-762 (814)
214 3mkq_A Coatomer beta'-subunit; 97.2 0.0084 2.9E-07 54.2 14.4 101 82-206 607-708 (814)
215 3ly7_A Transcriptional activat 97.2 0.012 4.2E-07 47.8 13.5 139 106-248 191-344 (372)
216 3qwp_A SET and MYND domain-con 97.2 0.0016 5.6E-08 54.5 8.8 94 44-137 291-399 (429)
217 2kc7_A BFR218_protein; tetratr 97.1 0.0025 8.7E-08 40.9 7.5 58 150-208 6-64 (99)
218 2kc7_A BFR218_protein; tetratr 97.1 0.0025 8.6E-08 41.0 7.5 51 52-103 13-64 (99)
219 3mkq_B Coatomer subunit alpha; 96.9 0.052 1.8E-06 39.2 13.3 131 81-241 12-142 (177)
220 2v5f_A Prolyl 4-hydroxylase su 96.7 0.022 7.5E-07 37.2 9.8 67 72-138 3-75 (104)
221 3bee_A Putative YFRE protein; 96.7 0.038 1.3E-06 35.3 10.3 67 71-138 3-72 (93)
222 3mkq_B Coatomer subunit alpha; 96.6 0.12 4.1E-06 37.3 15.9 124 52-205 18-141 (177)
223 1pc2_A Mitochondria fission pr 96.5 0.014 4.7E-07 41.1 7.8 81 56-138 15-100 (152)
224 3bee_A Putative YFRE protein; 96.4 0.026 9E-07 36.1 8.2 65 108-173 5-72 (93)
225 1pc2_A Mitochondria fission pr 96.4 0.048 1.6E-06 38.3 9.9 78 128-207 17-99 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.2 0.079 2.7E-06 34.5 9.8 67 142-208 3-75 (104)
227 3u64_A Protein TP_0956; tetrat 95.8 0.1 3.5E-06 40.9 10.1 81 56-138 180-269 (301)
228 3u64_A Protein TP_0956; tetrat 95.6 0.12 4.2E-06 40.5 10.1 91 91-183 180-281 (301)
229 1wy6_A Hypothetical protein ST 95.6 0.32 1.1E-05 33.4 12.5 141 85-247 18-158 (172)
230 1wy6_A Hypothetical protein ST 95.6 0.34 1.1E-05 33.3 14.4 144 46-211 10-157 (172)
231 4h7y_A Dual specificity protei 95.0 0.18 6.1E-06 35.3 8.1 112 73-187 12-136 (161)
232 1nzn_A CGI-135 protein, fissio 94.8 0.17 6E-06 34.2 7.6 81 126-208 18-103 (126)
233 1v54_E Cytochrome C oxidase po 94.6 0.36 1.2E-05 31.1 8.1 45 162-206 28-72 (109)
234 2ff4_A Probable regulatory pro 94.5 0.19 6.6E-06 41.4 8.9 73 147-220 174-251 (388)
235 4b4t_P 26S proteasome regulato 94.5 1.8 6.3E-05 36.2 17.6 190 52-242 29-246 (445)
236 1nzn_A CGI-135 protein, fissio 94.5 0.45 1.5E-05 32.2 9.0 65 72-137 33-102 (126)
237 2ff4_A Probable regulatory pro 94.4 0.21 7.3E-06 41.1 8.8 74 76-150 173-251 (388)
238 4h7y_A Dual specificity protei 94.4 0.31 1.1E-05 34.0 8.1 58 193-251 74-131 (161)
239 1v54_E Cytochrome C oxidase po 94.1 0.57 2E-05 30.2 8.2 64 181-244 10-75 (109)
240 4gns_B Protein CSD3, chitin bi 94.1 0.43 1.5E-05 42.8 10.5 118 52-171 261-398 (754)
241 4gns_B Protein CSD3, chitin bi 93.8 0.35 1.2E-05 43.3 9.6 124 78-205 252-397 (754)
242 2y69_E Cytochrome C oxidase su 93.0 0.84 2.9E-05 31.1 8.1 59 162-221 71-129 (152)
243 2y69_E Cytochrome C oxidase su 91.9 1.5 5.1E-05 29.9 8.2 51 194-244 68-118 (152)
244 4b4t_P 26S proteasome regulato 90.9 6.4 0.00022 32.9 14.7 153 88-242 30-205 (445)
245 2p58_C Putative type III secre 90.3 2.4 8.3E-05 27.2 7.6 85 124-217 22-106 (116)
246 2uwj_G Type III export protein 89.3 2.3 7.9E-05 27.3 6.9 85 124-217 21-105 (115)
247 4fhn_B Nucleoporin NUP120; pro 89.2 6.5 0.00022 37.3 13.1 143 115-262 818-988 (1139)
248 4fhn_B Nucleoporin NUP120; pro 89.1 16 0.00054 34.7 18.1 121 73-195 841-987 (1139)
249 3txn_A 26S proteasome regulato 89.0 8.5 0.00029 31.6 14.5 56 150-205 105-165 (394)
250 4b4t_R RPN7, 26S proteasome re 87.2 7.6 0.00026 32.3 11.1 98 75-172 132-236 (429)
251 3lvg_A Clathrin heavy chain 1; 87.1 0.00018 6E-09 60.3 -16.5 178 44-241 57-256 (624)
252 4b4t_R RPN7, 26S proteasome re 86.0 5.2 0.00018 33.3 9.4 97 111-207 133-236 (429)
253 3ffl_A Anaphase-promoting comp 85.4 6 0.00021 28.0 8.0 26 148-173 126-151 (167)
254 3o48_A Mitochondria fission 1 83.9 8 0.00027 26.3 8.8 26 182-207 81-106 (134)
255 3o48_A Mitochondria fission 1 83.5 8.4 0.00029 26.2 9.8 66 72-137 38-106 (134)
256 3eiq_C Programmed cell death p 82.9 17 0.00059 29.4 11.5 74 181-255 219-294 (358)
257 3lvg_A Clathrin heavy chain 1; 81.6 0.15 5.1E-06 43.2 -1.7 210 44-269 86-328 (624)
258 2ion_A PDCD4, programmed cell 81.3 3.7 0.00013 28.7 5.6 24 112-135 12-35 (152)
259 1zbp_A Hypothetical protein VP 81.2 5 0.00017 31.0 6.7 51 52-103 10-60 (273)
260 1zbp_A Hypothetical protein VP 80.9 4.2 0.00014 31.4 6.2 54 119-173 7-60 (273)
261 2nsz_A Programmed cell death p 80.2 10 0.00035 25.5 7.5 70 146-216 9-80 (129)
262 3ffl_A Anaphase-promoting comp 80.0 14 0.00046 26.2 8.8 92 47-138 27-151 (167)
263 1y8m_A FIS1; mitochondria, unk 77.7 15 0.0005 25.3 10.8 21 152-172 85-105 (144)
264 3esl_A Checkpoint serine/threo 77.3 19 0.00065 26.4 9.6 54 124-177 94-148 (202)
265 2ion_A PDCD4, programmed cell 76.1 15 0.00051 25.6 7.5 73 145-218 10-84 (152)
266 2zu6_B Programmed cell death p 75.7 28 0.00094 27.5 10.3 74 181-255 168-243 (307)
267 2uwj_G Type III export protein 75.6 13 0.00046 23.8 8.8 90 159-256 21-110 (115)
268 2d2s_A Exocyst complex compone 74.9 16 0.00055 27.5 7.9 29 142-170 89-117 (235)
269 2p58_C Putative type III secre 74.7 14 0.00049 23.7 9.5 90 159-256 22-111 (116)
270 3hra_A Ankyrin repeat family p 73.8 3.5 0.00012 29.6 4.0 161 44-214 6-173 (201)
271 1y8m_A FIS1; mitochondria, unk 73.0 20 0.00069 24.7 12.0 72 70-143 35-109 (144)
272 2fe3_A Peroxide operon regulat 72.9 20 0.00068 24.6 7.6 58 65-123 13-70 (145)
273 3jxi_A Vanilloid receptor-rela 72.4 1.6 5.4E-05 33.1 1.9 193 45-244 7-252 (260)
274 2fe3_A Peroxide operon regulat 72.4 20 0.00069 24.5 7.4 58 135-193 13-70 (145)
275 1mzb_A Ferric uptake regulatio 72.1 18 0.00063 24.4 7.1 59 65-124 9-68 (136)
276 2r9g_A AAA ATPase, central reg 71.7 27 0.00092 25.6 8.9 68 79-147 16-91 (204)
277 2d2s_A Exocyst complex compone 71.0 31 0.001 26.0 8.6 86 48-136 25-118 (235)
278 3ygs_P Procaspase 9; apoptosis 70.8 13 0.00043 23.6 5.6 61 200-262 25-85 (97)
279 2xig_A Ferric uptake regulatio 70.2 20 0.00068 24.7 7.0 44 80-123 32-75 (150)
280 3esl_A Checkpoint serine/threo 69.2 31 0.0011 25.3 12.5 58 157-214 92-150 (202)
281 2w57_A Ferric uptake regulatio 69.2 21 0.00072 24.6 6.9 59 65-124 8-67 (150)
282 1k1a_A B-cell lymphoma 3-encod 68.0 14 0.00047 27.2 6.3 181 44-238 10-204 (241)
283 2ijq_A Hypothetical protein; s 68.0 23 0.00078 24.9 6.8 60 43-102 35-103 (161)
284 1mzb_A Ferric uptake regulatio 67.9 21 0.00072 24.1 6.6 58 135-193 9-67 (136)
285 3eyy_A Putative iron uptake re 67.1 19 0.00064 24.7 6.3 57 65-123 10-66 (145)
286 2xig_A Ferric uptake regulatio 66.8 19 0.00064 24.9 6.3 58 135-193 18-75 (150)
287 2cwy_A Hypothetical protein TT 65.7 15 0.00051 23.2 5.0 39 44-82 5-44 (94)
288 3eyy_A Putative iron uptake re 65.2 16 0.00054 25.1 5.6 57 135-193 10-66 (145)
289 2w57_A Ferric uptake regulatio 64.3 23 0.00079 24.4 6.4 58 135-193 8-66 (150)
290 2wpv_A GET4, UPF0363 protein Y 64.0 52 0.0018 26.0 18.0 122 84-206 63-215 (312)
291 4ets_A Ferric uptake regulatio 63.8 33 0.0011 24.0 7.2 56 67-123 26-83 (162)
292 2nsz_A Programmed cell death p 63.4 31 0.001 23.1 8.0 64 112-176 10-75 (129)
293 1bpo_A Protein (clathrin); cla 62.6 69 0.0024 27.0 10.8 141 123-268 343-492 (494)
294 3ctd_A Putative ATPase, AAA fa 62.4 44 0.0015 24.6 8.6 70 76-145 34-111 (213)
295 2fu4_A Ferric uptake regulatio 62.0 23 0.00079 21.2 6.2 28 162-189 35-62 (83)
296 3lpz_A GET4 (YOR164C homolog); 60.9 62 0.0021 25.9 17.5 105 98-206 83-214 (336)
297 3t8k_A Uncharacterized protein 60.9 35 0.0012 24.3 7.1 95 44-143 7-108 (186)
298 3bge_A Predicted ATPase; struc 60.6 46 0.0016 24.3 8.2 62 79-140 9-78 (201)
299 4ets_A Ferric uptake regulatio 60.6 28 0.00094 24.4 6.2 59 135-194 24-84 (162)
300 4a1g_A Mitotic checkpoint seri 60.4 40 0.0014 23.4 9.2 52 127-178 83-135 (152)
301 4ady_A RPN2, 26S proteasome re 59.2 1.1E+02 0.0039 28.3 13.3 178 56-242 471-657 (963)
302 3bqo_A Telomeric repeat-bindin 58.8 50 0.0017 24.1 7.9 22 44-65 26-48 (211)
303 4b4t_S RPN3, 26S proteasome re 58.7 87 0.003 26.8 10.1 62 109-173 231-299 (523)
304 2fu4_A Ferric uptake regulatio 58.2 27 0.00093 20.9 6.7 58 65-123 8-66 (83)
305 3bu8_A Telomeric repeat-bindin 57.1 57 0.0019 24.2 11.1 95 44-138 20-143 (235)
306 3t8k_A Uncharacterized protein 57.0 39 0.0013 24.0 6.7 150 84-237 13-174 (186)
307 2p1h_A APAF-1, apoptotic prote 56.5 29 0.00098 21.6 5.3 59 198-260 24-82 (94)
308 1k1a_A B-cell lymphoma 3-encod 55.3 27 0.00091 25.6 5.8 151 80-239 12-172 (241)
309 4aez_C MAD3, mitotic spindle c 53.9 31 0.0011 25.7 5.7 71 70-143 113-184 (223)
310 3l6a_A Eukaryotic translation 53.5 46 0.0016 26.9 7.2 63 76-142 14-81 (364)
311 2ijq_A Hypothetical protein; s 53.4 55 0.0019 23.0 8.1 51 87-137 45-103 (161)
312 3bu8_A Telomeric repeat-bindin 51.9 71 0.0024 23.7 7.5 67 55-123 88-161 (235)
313 2wvi_A Mitotic checkpoint seri 51.5 61 0.0021 22.8 9.4 51 128-178 79-130 (164)
314 3ygs_P Procaspase 9; apoptosis 50.4 45 0.0015 21.0 6.4 14 125-138 53-66 (97)
315 3c1d_A Protein ORAA, regulator 50.3 61 0.0021 22.5 10.4 48 91-140 47-94 (159)
316 3mwm_A ZUR, putative metal upt 50.2 23 0.00078 24.1 4.3 43 151-193 20-62 (139)
317 4gq2_M Nucleoporin NUP120; bet 50.1 1.6E+02 0.0055 27.3 11.6 27 216-242 899-925 (950)
318 2o03_A Probable zinc uptake re 49.7 39 0.0013 22.5 5.4 44 80-123 16-59 (131)
319 3lpz_A GET4 (YOR164C homolog); 49.5 99 0.0034 24.7 20.9 134 54-202 11-159 (336)
320 4a1g_A Mitotic checkpoint seri 49.4 63 0.0022 22.4 11.8 54 198-251 84-138 (152)
321 2o03_A Probable zinc uptake re 49.1 24 0.00084 23.6 4.3 34 157-190 23-56 (131)
322 2rg8_A Programmed cell death p 48.6 68 0.0023 22.5 6.6 59 146-206 12-72 (165)
323 2b7e_A PRE-mRNA processing pro 47.7 14 0.00048 21.0 2.3 29 56-84 3-31 (59)
324 3eu9_A Huntingtin-interacting 47.6 12 0.00042 27.3 2.9 16 46-61 12-28 (240)
325 3kae_A CDC27, possible protein 47.6 75 0.0026 22.8 11.6 88 44-137 35-142 (242)
326 1wdy_A 2-5A-dependent ribonucl 47.6 28 0.00095 26.1 5.0 88 150-238 151-240 (285)
327 4g8k_A 2-5A-dependent ribonucl 47.0 52 0.0018 25.6 6.6 17 45-61 170-187 (337)
328 1oai_A Nuclear RNA export fact 46.9 16 0.00055 20.7 2.5 23 52-74 33-56 (59)
329 3mwm_A ZUR, putative metal upt 45.5 36 0.0012 23.0 4.7 45 79-123 18-62 (139)
330 1ug3_A EIF4GI, eukaryotic prot 44.7 76 0.0026 25.3 7.2 26 179-204 141-166 (339)
331 2wpv_A GET4, UPF0363 protein Y 44.4 1.2E+02 0.0039 24.0 17.7 114 74-202 33-157 (312)
332 2pnn_A Transient receptor pote 44.1 15 0.00051 27.8 2.8 120 44-168 14-169 (273)
333 3txn_A 26S proteasome regulato 43.4 1.3E+02 0.0046 24.5 18.6 159 79-241 104-282 (394)
334 1wgl_A TOLL-interacting protei 43.0 45 0.0015 18.9 5.3 22 156-177 35-56 (59)
335 3ltm_A Alpha-REP4; protein eng 42.7 89 0.003 22.2 17.1 171 72-259 31-202 (211)
336 3eiq_C Programmed cell death p 41.4 86 0.003 25.3 6.9 94 146-240 219-318 (358)
337 1ug3_A EIF4GI, eukaryotic prot 41.2 26 0.0009 28.0 3.9 64 147-212 14-79 (339)
338 2f6m_A Suppressor protein STP2 41.2 52 0.0018 19.1 4.8 46 181-227 4-49 (65)
339 4fke_A Aminopeptidase N; zinc 40.4 2.2E+02 0.0077 26.2 16.4 49 86-137 738-786 (909)
340 3c1d_A Protein ORAA, regulator 39.3 94 0.0032 21.5 11.0 47 127-175 48-94 (159)
341 3pvs_A Replication-associated 38.5 1.7E+02 0.0058 24.3 11.8 54 156-209 267-325 (447)
342 2rfa_A Transient receptor pote 38.1 83 0.0029 22.7 6.2 183 45-241 5-221 (232)
343 3l6a_A Eukaryotic translation 37.8 85 0.0029 25.4 6.4 73 145-218 13-87 (364)
344 2yru_A Steroid receptor RNA ac 37.3 61 0.0021 21.4 4.5 41 62-102 49-89 (118)
345 2wvi_A Mitotic checkpoint seri 36.9 1.1E+02 0.0037 21.5 12.2 55 161-215 77-132 (164)
346 1s6c_A KV4 potassium channel-i 36.9 1E+02 0.0035 21.2 9.6 42 196-239 140-181 (183)
347 1bd8_A P19INK4D CDK4/6 inhibit 36.2 19 0.00067 24.2 2.2 13 52-64 12-24 (156)
348 1wty_A Hypothetical protein TT 36.0 78 0.0027 20.7 5.0 66 55-126 4-70 (119)
349 4ady_A RPN2, 26S proteasome re 35.7 2.8E+02 0.0094 25.9 19.7 148 52-207 503-657 (963)
350 3kea_A K1L; tropism, ANK repea 35.6 28 0.00095 26.7 3.2 20 44-63 32-52 (285)
351 1naf_A ADP-ribosylation factor 35.0 70 0.0024 22.3 4.8 26 131-156 21-46 (158)
352 4fke_A Aminopeptidase N; zinc 34.9 2.7E+02 0.0094 25.6 15.5 120 78-204 690-818 (909)
353 2zu6_B Programmed cell death p 33.9 1.4E+02 0.0047 23.5 6.9 77 148-225 170-248 (307)
354 2lwd_A Probable ATP-dependent 33.1 95 0.0032 19.7 5.8 46 215-260 44-90 (100)
355 3twr_A Tankyrase-2; ankyrin re 33.0 51 0.0017 22.3 4.0 7 190-196 116-122 (165)
356 2rfa_A Transient receptor pote 32.9 1.3E+02 0.0046 21.5 7.1 154 44-207 38-222 (232)
357 3kea_A K1L; tropism, ANK repea 32.2 55 0.0019 24.9 4.4 141 81-239 35-183 (285)
358 1wdy_A 2-5A-dependent ribonucl 31.7 28 0.00095 26.1 2.6 113 44-169 6-127 (285)
359 1oxz_A ADP-ribosylation factor 31.4 1.5E+02 0.005 21.4 10.0 25 131-155 37-61 (186)
360 2p1h_A APAF-1, apoptotic prote 30.4 97 0.0033 19.0 7.0 34 157-194 49-82 (94)
361 3aji_A 26S proteasome non-ATPa 29.7 1.5E+02 0.005 21.2 6.3 114 45-168 8-127 (231)
362 4b4t_S RPN3, 26S proteasome re 29.6 2.7E+02 0.0091 23.8 11.5 65 74-138 231-299 (523)
363 3d5l_A Regulatory protein RECX 29.5 1.7E+02 0.0058 21.6 9.4 48 127-175 94-141 (221)
364 3qil_A Clathrin heavy chain 1; 29.4 32 0.0011 22.9 2.1 52 181-235 34-85 (125)
365 1bd8_A P19INK4D CDK4/6 inhibit 29.2 33 0.0011 23.0 2.4 19 81-99 6-24 (156)
366 3kae_A CDC27, possible protein 29.0 1.6E+02 0.0055 21.1 10.4 53 153-205 71-140 (242)
367 1qsa_A Protein (soluble lytic 29.0 2.9E+02 0.01 24.1 19.2 194 46-243 107-348 (618)
368 2dzn_A Probable 26S proteasome 28.8 58 0.002 23.4 3.9 172 45-237 4-194 (228)
369 2keb_A DNA polymerase subunit 28.6 1.2E+02 0.0039 19.3 6.2 32 162-193 27-58 (101)
370 2yru_A Steroid receptor RNA ac 28.3 1.3E+02 0.0044 19.8 5.1 41 202-242 49-89 (118)
371 3e3v_A Regulatory protein RECX 28.2 1.6E+02 0.0055 20.8 9.5 50 91-141 50-99 (177)
372 3pvs_A Replication-associated 27.5 2.6E+02 0.009 23.1 12.0 36 190-225 266-301 (447)
373 3f3f_C Nucleoporin NUP85; stru 27.3 2.3E+02 0.008 24.5 7.5 69 93-163 500-568 (570)
374 3jxi_A Vanilloid receptor-rela 26.4 60 0.002 24.0 3.7 87 81-168 9-114 (260)
375 3lxu_X Tripeptidyl-peptidase 2 25.6 4.5E+02 0.015 25.7 9.7 35 86-122 1296-1330(1354)
376 1zl8_A LIN-7; heterodimer, alp 25.6 88 0.003 17.0 3.4 24 228-251 7-30 (53)
377 3ltm_A Alpha-REP4; protein eng 25.4 1.8E+02 0.0062 20.5 12.6 153 91-259 18-171 (211)
378 3hra_A Ankyrin repeat family p 24.9 84 0.0029 21.9 4.1 125 44-178 40-172 (201)
379 2etb_A Transient receptor pote 24.8 67 0.0023 23.7 3.6 24 83-106 8-31 (256)
380 3dfg_A Xcrecx, regulatory prot 24.7 1.8E+02 0.0061 20.2 12.2 11 165-175 86-96 (162)
381 2p22_A Suppressor protein STP2 24.6 1.2E+02 0.004 21.6 4.5 49 178-227 110-158 (174)
382 3bqo_A Telomeric repeat-bindin 24.6 70 0.0024 23.4 3.3 46 160-207 94-145 (211)
383 3rjo_A Endoplasmic reticulum a 24.3 2.9E+02 0.0099 22.5 15.9 147 54-210 125-298 (419)
384 3f3f_C Nucleoporin NUP85; stru 23.7 3.6E+02 0.012 23.4 8.3 69 194-262 496-566 (570)
385 2etb_A Transient receptor pote 23.5 88 0.003 23.0 4.1 119 45-168 4-157 (256)
386 4aez_C MAD3, mitotic spindle c 23.5 2.3E+02 0.0079 21.0 11.3 52 161-212 131-183 (223)
387 2qfz_A TBC1 domain family memb 23.3 97 0.0033 24.6 4.5 104 165-268 230-343 (345)
388 2rg8_A Programmed cell death p 22.8 2E+02 0.0068 20.1 6.3 24 113-136 14-37 (165)
389 4g8k_A 2-5A-dependent ribonucl 22.8 2.6E+02 0.009 21.5 7.3 93 129-232 219-316 (337)
390 3f6q_A Integrin-linked protein 22.2 1E+02 0.0036 21.1 4.1 20 44-63 6-26 (179)
391 3lxu_X Tripeptidyl-peptidase 2 22.1 5.3E+02 0.018 25.2 9.5 77 160-240 1265-1342(1354)
392 1q02_A Sequestosome 1; helical 21.8 1.1E+02 0.0038 16.7 4.4 13 156-168 36-48 (52)
393 3e3v_A Regulatory protein RECX 21.4 2.2E+02 0.0075 20.1 9.9 114 125-241 49-164 (177)
394 3ltj_A Alpharep-4; protein eng 21.0 2.2E+02 0.0075 19.8 19.0 152 73-241 27-178 (201)
395 3us6_A Histidine-containing ph 20.9 2.1E+02 0.0072 19.6 8.3 27 147-173 96-122 (153)
396 3eu9_A Huntingtin-interacting 20.8 2.1E+02 0.0073 20.3 5.8 114 83-213 15-136 (240)
397 3qil_A Clathrin heavy chain 1; 20.5 1.4E+02 0.0047 19.9 3.8 45 116-163 39-83 (125)
398 4gt9_A TS, tsase, thymidylate 20.2 2.6E+02 0.0088 20.8 5.9 60 196-255 139-217 (232)
399 3ljn_A Hypothetical protein; a 20.0 1E+02 0.0035 24.2 4.0 153 78-239 21-195 (364)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7.6e-36 Score=255.98 Aligned_cols=184 Identities=13% Similarity=0.077 Sum_probs=178.0
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHCCCCCCHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN---------VAKCEGVINQMHKSGLKPDTFVI 112 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~~ 112 (271)
++.+|.+| .|++++|+++|++|.+.|++||..+|+.||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 78889999 99999999999999999999999999999999997665 68899999999999999999999
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 036275 113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK 192 (271)
Q Consensus 113 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 192 (271)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036275 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227 (271)
Q Consensus 193 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 227 (271)
|+.++|.+++++|.+.|+.|+..||+.++..|...
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.1e-35 Score=253.26 Aligned_cols=204 Identities=12% Similarity=0.160 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------H
Q 036275 56 SDAHAVFEEMKRLGITPTMK-SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ---------F 125 (271)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~ 125 (271)
..+..+.+++.+.++.+++. .++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34556667787777766554 5889999999999999999999999999999999999999999987765 6
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 205 (271)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH----HHHHHhhcc
Q 036275 206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI----YFNLYGEKG 259 (271)
Q Consensus 206 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~G 259 (271)
.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..+... +...|...+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999887665544 444555543
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.90 E-value=9.3e-22 Score=172.59 Aligned_cols=213 Identities=9% Similarity=-0.061 Sum_probs=142.3
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444443332 3456667777777777777777777777776643 23566777777777777777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA--- 208 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 208 (271)
|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 430 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 430 YTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 77776653 4466777777777777777777777777776543 235677777777777777777777777777654
Q ss_pred -CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---hhHHHHHHHhhccccccchhhh
Q 036275 209 -GCYPD--GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---ALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 209 -~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+..|+ ..+|..+..+|.+.|++++|.++++++.+.++. .+..+..+|.+.|+.++|++.|
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55666 667777777777777777777777777665433 3444566677777777777665
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.4e-21 Score=171.39 Aligned_cols=233 Identities=6% Similarity=-0.075 Sum_probs=204.6
Q ss_pred hHHHHHHHhhcC------chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275 32 FMLINFLLLQHT------PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103 (271)
Q Consensus 32 ~~~~~f~~~~~~------y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 103 (271)
.+..+|+.+... |+.++.+| .|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 477888877652 88888888 999999999999999876 558889999999999999999999999999866
Q ss_pred CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHH
Q 036275 104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183 (271)
Q Consensus 104 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 183 (271)
. +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++...+ +.+..+|.
T Consensus 369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 4 4578899999999999999999999999998863 4568899999999999999999999999998764 34788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc------c----chhHHHHH
Q 036275 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM------K----TALPIYFN 253 (271)
Q Consensus 184 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~----~~~~~~~~ 253 (271)
.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+.. + ..+..+..
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 99999999999999999999999864 4578999999999999999999999999997652 2 23456778
Q ss_pred HHhhccccccchhhhh
Q 036275 254 LYGEKGVARSNLGQYI 269 (271)
Q Consensus 254 ~~~~~G~~~~a~~~~~ 269 (271)
+|.+.|+.++|++.|.
T Consensus 525 ~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHH
Confidence 8999999999998763
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=5.6e-22 Score=176.62 Aligned_cols=147 Identities=14% Similarity=0.189 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHh---CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEK---GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 185 (271)
..||++||++|++.|++++|.++|++|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||.+||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---------hhHHHHHHH
Q 036275 186 LAAYSRKKLY-RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---------ALPIYFNLY 255 (271)
Q Consensus 186 i~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~~ 255 (271)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+ +.+.+.++++.....+ ..+.+.++|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999998874 7888999999999999999999988765544 3444444444322221 234466666
Q ss_pred hhcc
Q 036275 256 GEKG 259 (271)
Q Consensus 256 ~~~G 259 (271)
.+.|
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6655
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=9.2e-22 Score=175.28 Aligned_cols=151 Identities=14% Similarity=0.177 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHK---SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI 149 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 149 (271)
-..+|+++|++|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988764 48899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC-HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 036275 150 LINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD------GGTAKVLIS 222 (271)
Q Consensus 150 li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~ 222 (271)
+|.++++.|+ .++|.++|++|...|+.||..+|+.++.+..+. .+++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999998 478999999999999999999999998766554 333444444 3344444 344445555
Q ss_pred HHhccC
Q 036275 223 ACSSED 228 (271)
Q Consensus 223 ~~~~~g 228 (271)
.+.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 566544
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.82 E-value=2e-17 Score=137.63 Aligned_cols=220 Identities=10% Similarity=0.018 Sum_probs=168.1
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
+..+...+ .|++++|.+.|+++.+.. |.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 33344444 677777777777777654 4466777777777777777777777777777654 2245667777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.|++++|...+++..+.. +.+..++..+..++.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...
T Consensus 216 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888877776652 3457788888899999999999999999888763 22567888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch---hHHHHHHHhhccccccchhhh
Q 036275 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~~ 268 (271)
++++.+.. +.+..++..+...+...|++++|...++++.+..+.. ...+..+|.+.|+.++|++.|
T Consensus 294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99988763 5678888889999999999999999999988765543 344667789999999988776
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.80 E-value=5e-17 Score=135.26 Aligned_cols=221 Identities=14% Similarity=0.099 Sum_probs=134.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...| .|++++|++.|+++.+.. |.+..+|..+..++.+.|++++|...|+++.+... -+...+..+...+..
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 147 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 55555555 666777777666666553 34455566666666666666666666666555421 123344445555555
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC---------------------------
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--------------------------- 174 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------------------- 174 (271)
.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.+
T Consensus 148 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555555432 2234455555555555555555555555443321
Q ss_pred -----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch-
Q 036275 175 -----LKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA- 247 (271)
Q Consensus 175 -----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~- 247 (271)
..| +..++..+...+...|++++|...++++.+.+ +.+..++..+..++.+.|++++|.+.++++.+..+..
T Consensus 227 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 123 35667777777788888888888888877753 3356677777777888888888888888877655433
Q ss_pred --hHHHHHHHhhccccccchhhh
Q 036275 248 --LPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 248 --~~~~~~~~~~~G~~~~a~~~~ 268 (271)
...+..+|.+.|+.++|++.|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 334556677888888777655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.79 E-value=2.6e-17 Score=139.32 Aligned_cols=221 Identities=10% Similarity=-0.033 Sum_probs=187.9
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|+++|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+..+|.+
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 66677777 999999999999998875 6689999999999999999999999999999875 3367889999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADI---STYNIL------------INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 186 (271)
.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|.+.|+++.... +.+..++..+.
T Consensus 107 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 184 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA 184 (450)
T ss_dssp TTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 999999999999999863 3344 566655 444899999999999999998753 34678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---H------------
Q 036275 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---Y------------ 251 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~------------ 251 (271)
..|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+..... +
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998753 4578899999999999999999999999998765544332 2
Q ss_pred HHHHhhccccccchhhhh
Q 036275 252 FNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 252 ~~~~~~~G~~~~a~~~~~ 269 (271)
..+|.+.|+.++|++.|.
T Consensus 264 ~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYE 281 (450)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 677899999999988763
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.79 E-value=7.7e-17 Score=136.45 Aligned_cols=220 Identities=8% Similarity=-0.015 Sum_probs=154.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHH---
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT---FVINSM--- 115 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l--- 115 (271)
|..+..+| .|++++|.+.|+++.+.+ +.+..++..+..+|.+.|++++|...|+++.+.... +. ..+..+
T Consensus 63 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 63 YYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKS 140 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHH
Confidence 56666666 888999999998888876 557888888888888899999999998888876321 23 444444
Q ss_pred ---------HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275 116 ---------LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186 (271)
Q Consensus 116 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 186 (271)
...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.... +.+..++..+.
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 218 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIS 218 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 334777888888888888877653 4567777788888888888888888888776542 23567777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHhccCcHHHHHHHHHHHHhcccch-------
Q 036275 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL------------ISACSSEDQIEQVTTLVRTMHKDMKTA------- 247 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~------- 247 (271)
..+...|++++|...++++.+.. +.+...+..+ ...+...|++++|..+++++.+..+..
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 297 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 77888888888888887776542 2233333333 566777777777777777776654432
Q ss_pred hHHHHHHHhhccccccchhhh
Q 036275 248 LPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 248 ~~~~~~~~~~~G~~~~a~~~~ 268 (271)
...+..+|.+.|+.++|++.+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHH
Confidence 233445577777777776654
No 11
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=6.9e-17 Score=133.26 Aligned_cols=222 Identities=9% Similarity=-0.052 Sum_probs=179.5
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|++.|+++.+.. +.+..+|..+...+...|++++|+..|++..+.. +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 44444445 999999999999999876 6689999999999999999999999999998875 3367889999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChh----------hHHHHHHHHHcCCCHHHHHHHHHhchhCCCC-CCHHHHHHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADIS----------TYNILINIYGRGGFIEKMEGLFQSLPAKRLK-PDVVTWTSRLAAYS 190 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~ 190 (271)
.|++++|.+.++++.+.. +.+.. .+..+...+...|++++|.+.++++...... ++..++..+...+.
T Consensus 146 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 999999999999998752 11222 3344588999999999999999999876322 25889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch---hHHHHHHHhhccccccchhh
Q 036275 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~ 267 (271)
..|++++|...+++..+.. +.+..++..+..++...|++++|...+++..+..+.. ...+..+|.+.|+.++|++.
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999998863 4568899999999999999999999999998766554 34456679999999999887
Q ss_pred hh
Q 036275 268 YI 269 (271)
Q Consensus 268 ~~ 269 (271)
|.
T Consensus 304 ~~ 305 (365)
T 4eqf_A 304 FL 305 (365)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 12
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=2.8e-16 Score=120.53 Aligned_cols=192 Identities=14% Similarity=0.019 Sum_probs=137.4
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+-..+ .|++++|...|++..+.+ |.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+...+..
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33444444 888888888888887765 5678888888888888888888888888887764 2356677788888888
Q ss_pred c-----------CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275 122 L-----------GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190 (271)
Q Consensus 122 ~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 190 (271)
. |++++|+..+++..+.. |.+...+..+..++...|++++|...|++..+.. .+...+..+..++.
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 8 88888888888887753 4457778888888888888888888888887765 57778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
..|++++|...+++..+.. +-+...+..+..++...|++++|...+++..
T Consensus 163 ~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888887753 3456777778888888888888888877653
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=1e-15 Score=123.86 Aligned_cols=222 Identities=7% Similarity=-0.062 Sum_probs=174.7
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 120 (271)
+..+...+ .|++++|...++++.+.. +.+...|..+...+...| ++++|...|++..+.. +.+...+..+...+.
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 33344555 899999999999988765 557788888888888998 8999999999888765 235667888888999
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
..|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|..
T Consensus 137 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999888763 4456777778888999999999999999887763 3357788888899999999999999
Q ss_pred HHHHHHHCC--------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---hhHHHHHHHhhccccccchhhhh
Q 036275 201 IFEEMIDAG--------CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---ALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 201 ~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
.+++..+.. .+.+..++..+..++...|++++|...+++..+..+. ....+..+|.+.|+.++|++.|.
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 998877531 1234567888888899999999999999988765543 34445667888999988887763
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=3.8e-15 Score=122.62 Aligned_cols=219 Identities=9% Similarity=-0.008 Sum_probs=160.0
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
.+...+ .|++++|...|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+...+...|
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 344444 777777777777777664 5567777777777777777777777777777654 335667777777777777
Q ss_pred CHhHHHHHHHHHHhCCC-----------------------------------------------CC---ChhhHHHHHHH
Q 036275 124 QFEKMEEVLTAMEKGSY-----------------------------------------------AA---DISTYNILINI 153 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~-----------------------------------------------~~---~~~~~~~li~~ 153 (271)
++++|.+.++++.+..- .| +..++..+...
T Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 77777777776654310 12 46777888888
Q ss_pred HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036275 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233 (271)
Q Consensus 154 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 233 (271)
+.+.|++++|.+.|+++.... +.+..++..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 888899999999888877652 2356788888888888999999999888887753 44577888888888888999999
Q ss_pred HHHHHHHHhccc--------------chhHHHHHHHhhccccccchhhh
Q 036275 234 TTLVRTMHKDMK--------------TALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 234 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
...+++..+..+ ..+..+..+|...|+.++|...+
T Consensus 305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 998888765433 23445667788888888887654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.6e-15 Score=122.81 Aligned_cols=221 Identities=5% Similarity=-0.097 Sum_probs=186.9
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
+..+...+ .|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 44445555 999999999999998876 5677788888999999999999999999998864 3367788899999999
Q ss_pred cC-CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275 122 LG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 122 ~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
.| ++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 99 9999999999998874 4567889999999999999999999999988763 2245677789999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc------------cchhHHHHHHHhhccccccchhhh
Q 036275 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM------------KTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 201 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
.+++..+.. +.+...+..+...+...|++++|...+++..+.. ......+..+|.+.|+.++|++.|
T Consensus 181 ~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 181 FFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999998864 5567889999999999999999999999987643 123455677899999999998876
Q ss_pred h
Q 036275 269 I 269 (271)
Q Consensus 269 ~ 269 (271)
.
T Consensus 260 ~ 260 (330)
T 3hym_B 260 R 260 (330)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=5.6e-16 Score=127.80 Aligned_cols=229 Identities=10% Similarity=0.025 Sum_probs=180.8
Q ss_pred HHHHHHHhhc----C---chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275 33 MLINFLLLQH----T---PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103 (271)
Q Consensus 33 ~~~~f~~~~~----~---y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 103 (271)
+...|+.... . |..+...| .|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...++++.+.
T Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 4555555433 2 77777777 999999999999999876 567999999999999999999999999999875
Q ss_pred CCCCC-----------HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 104 GLKPD-----------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 104 ~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
. |+ ...+..+...+...|++++|.++++++.+.. +. +..++..+...|...|++++|.+.|+++
T Consensus 163 ~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 163 N--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp C--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred C--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3 22 2334456888999999999999999998874 33 6889999999999999999999999998
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc-----
Q 036275 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK----- 245 (271)
Q Consensus 171 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----- 245 (271)
.+.. +.+..+|..+..+|...|++++|...+++..+.. +.+..++..+..++...|++++|...+++..+..+
T Consensus 240 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 240 LTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 8763 3468899999999999999999999999998863 44588899999999999999999999999876442
Q ss_pred ----------chhHHHHHHHhhccccccchhh
Q 036275 246 ----------TALPIYFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 246 ----------~~~~~~~~~~~~~G~~~~a~~~ 267 (271)
..+..+-.++...|+.+.+.+.
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 2345566677888887766544
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.2e-15 Score=123.44 Aligned_cols=221 Identities=10% Similarity=0.002 Sum_probs=162.6
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH------
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM------ 115 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------ 115 (271)
|..+...+ .|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 135 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVD 135 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHH
Confidence 44455555 777777777777777664 456777777777777777777777777777765321 11222222
Q ss_pred --------HH-HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275 116 --------LN-LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186 (271)
Q Consensus 116 --------i~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 186 (271)
.. .+...|++++|.++++++.+.. +.+..++..+...+...|++++|.+.++++.... +.+..++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 22 2566677777777777777653 4467888899999999999999999999988763 33578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---------------hhHHH
Q 036275 187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---------------ALPIY 251 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~~ 251 (271)
..+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.+++..+..+. .+..+
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 292 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFF 292 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHH
Confidence 99999999999999999988753 446788889999999999999999999988765544 23445
Q ss_pred HHHHhhccccccchhhhh
Q 036275 252 FNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 252 ~~~~~~~G~~~~a~~~~~ 269 (271)
..+|.+.|+.++|.+.+.
T Consensus 293 ~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 293 RMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHTTCHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 677899999998887653
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.72 E-value=5.5e-15 Score=120.81 Aligned_cols=220 Identities=10% Similarity=-0.055 Sum_probs=184.7
Q ss_pred hHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 45 NLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 45 ~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
..+...+ .|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +-+...+..+...+...
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 3444445 999999999999998876 6688999999999999999999999999998874 33678899999999999
Q ss_pred CCHhHHHHHHHHHHhCCCC---CChhhHHHH------------HHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYA---ADISTYNIL------------INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
|++++|...+++..+.. + .+...+..+ ...+...|++++|.+.++++.... +.+...+..+..
T Consensus 85 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 99999999999998863 3 345555555 588999999999999999988763 346788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---------------HH
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---------------YF 252 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------------~~ 252 (271)
.+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+..+..... ..
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998864 5578899999999999999999999999998766554432 24
Q ss_pred HHHhhccccccchhhhh
Q 036275 253 NLYGEKGVARSNLGQYI 269 (271)
Q Consensus 253 ~~~~~~G~~~~a~~~~~ 269 (271)
..+.+.|+.++|++.|.
T Consensus 242 ~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYE 258 (359)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 55888999999987663
No 19
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=5.8e-15 Score=115.23 Aligned_cols=201 Identities=7% Similarity=0.019 Sum_probs=173.4
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 55666666 999999999999998875 5688999999999999999999999999998875 3367889999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
.|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998833344 56788899999999999999999999988763 2357889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 201 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
.+++..+.. +.+...+..+...+...|+.++|.++++++.+..+...
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 999988764 45777888889999999999999999999988765543
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.6e-15 Score=116.31 Aligned_cols=194 Identities=11% Similarity=0.050 Sum_probs=158.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275 71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150 (271)
Q Consensus 71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 150 (271)
|+++..+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 6778899999999999999999999999999875 3377889999999999999999999999998874 5567899999
Q ss_pred HHHHHcC-----------CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036275 151 INIYGRG-----------GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219 (271)
Q Consensus 151 i~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 219 (271)
..++... |++++|...|++..+.. +-+...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999988763 2257789999999999999999999999999876 68889999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcccchhH---HHHHHHhhccccccchhhhh
Q 036275 220 LISACSSEDQIEQVTTLVRTMHKDMKTALP---IYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 220 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~G~~~~a~~~~~ 269 (271)
+..++...|++++|...+++..+..+.... .+..++...|+.++|++.|-
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999999999999887665544 35567999999999988763
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=5.8e-18 Score=140.34 Aligned_cols=206 Identities=10% Similarity=0.064 Sum_probs=88.0
Q ss_pred hHHHHHHHhhcC--chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036275 32 FMLINFLLLQHT--PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107 (271)
Q Consensus 32 ~~~~~f~~~~~~--y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 107 (271)
.|.+.++++++. |..+..++ .|++++|++.|.+. +|..+|..++.++...|++++|+.+++..++. .+
T Consensus 21 ~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~ 92 (449)
T 1b89_A 21 RAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--AR 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Cc
Confidence 466677777665 99999999 99999999999652 57779999999999999999999988777664 45
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.
T Consensus 93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 93 ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp ----------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 67788899999999999999988874 367779999999999999999999999977 36999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhh
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~ 267 (271)
++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+. ..+.....+++.|.+.|++++|+..
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999987 378899999999999999999977666544 3333445678889999999999776
Q ss_pred h
Q 036275 268 Y 268 (271)
Q Consensus 268 ~ 268 (271)
+
T Consensus 230 L 230 (449)
T 1b89_A 230 L 230 (449)
T ss_dssp H
T ss_pred H
Confidence 5
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=3.3e-15 Score=120.77 Aligned_cols=219 Identities=8% Similarity=-0.062 Sum_probs=180.0
Q ss_pred hHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 45 NLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 45 ~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
-.+...+ .|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 3344444 999999999999998875 5688999999999999999999999999998874 34778899999999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNIL--------------IN-IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.... +.+..++..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 99999999999998863 3334444443 33 4788899999999999988763 336789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch---hHHHHHHHhhccccccc
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSN 264 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a 264 (271)
.+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+..+.. ...+..+|.+.|+.++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999998764 4567889999999999999999999999988765543 44456679999999999
Q ss_pred hhhh
Q 036275 265 LGQY 268 (271)
Q Consensus 265 ~~~~ 268 (271)
++.|
T Consensus 260 ~~~~ 263 (327)
T 3cv0_A 260 AKQL 263 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 23
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=2.6e-14 Score=109.21 Aligned_cols=201 Identities=5% Similarity=-0.086 Sum_probs=170.8
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 55566666 999999999999998875 5678899999999999999999999999998864 3367889999999999
Q ss_pred c-CCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036275 122 L-GQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL 199 (271)
Q Consensus 122 ~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 199 (271)
. |++++|...++++.+.+..| +...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 9 99999999999998843333 36788999999999999999999999988763 235788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 200 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
..+++..+.....+...+..+...+...|+.+.+..+++.+.+..+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 999998875411567778888888899999999999999987665443
No 24
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.70 E-value=2.9e-14 Score=116.46 Aligned_cols=221 Identities=8% Similarity=-0.036 Sum_probs=140.9
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH----
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK--PDTFVINSM---- 115 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l---- 115 (271)
|..+...+ .|++++|.+.|+++.+.. +.+...|..+...+...|++++|...+++..+.... .+...+..+
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (359)
T 3ieg_A 40 YYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD 118 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH
Confidence 44455555 788888888888877664 446677777778888888888888888777765320 133334333
Q ss_pred --------HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 116 --------LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 116 --------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
...+...|++++|.++++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+..
T Consensus 119 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 196 (359)
T 3ieg_A 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKIST 196 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 466777777777777777776653 4456677777777777777777777777776652 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHhcccchhH------
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK------------VLISACSSEDQIEQVTTLVRTMHKDMKTALP------ 249 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------ 249 (271)
.+...|++++|...+++..+.. +.+...+. .+...+...|++++|...+++..+..+....
T Consensus 197 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 275 (359)
T 3ieg_A 197 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK 275 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 7777777777777777766542 22222222 1244466667777777777766654443221
Q ss_pred -HHHHHHhhccccccchhhh
Q 036275 250 -IYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 250 -~~~~~~~~~G~~~~a~~~~ 268 (271)
.+..+|.+.|+.++|++.|
T Consensus 276 ~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHH
Confidence 1334566666666666554
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=4.7e-15 Score=118.86 Aligned_cols=206 Identities=10% Similarity=0.112 Sum_probs=100.4
Q ss_pred hcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 130 (271)
.++.++|++.++++...+. |-+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555554432 22344444444555555555555555544 2344455555555555555555555
Q ss_pred HHHHHHhCCCCCChhhH---HHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 131 VLTAMEKGSYAADISTY---NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
.++.+.+.. |+.... ...+..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...+++..+
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555442 322111 11223333345555555555555544 123445555555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHHHhcccchhHHHHHHHhhccccccchhhh
Q 036275 208 AGCYPDGGTAKVLISACSSEDQIEQ-VTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 208 ~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
.. +-+..++..++..+...|+.++ +.++++++.+..+. .+.+.+...+.+.++++...|
T Consensus 229 ~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 229 KD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHc
Confidence 32 2244455555555555555543 34555555443322 223444555555555555544
No 26
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=3.7e-15 Score=115.49 Aligned_cols=203 Identities=5% Similarity=-0.034 Sum_probs=165.5
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|...|+++.+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+...+..
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 55555556 999999999999998865 5688999999999999999999999999998874 3367889999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.... +.+...+..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998864 5578889999999999999999999999988753 33678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHH
Q 036275 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY 251 (271)
Q Consensus 202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 251 (271)
+++..+.. +.+..++..+..++...|++++|.+.++++.+..+......
T Consensus 182 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 182 FAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 99988763 45678899999999999999999999999988766655443
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.1e-14 Score=116.75 Aligned_cols=210 Identities=9% Similarity=0.070 Sum_probs=170.8
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 036275 46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINSMLNLYGRL 122 (271)
Q Consensus 46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~ 122 (271)
.+..+| .|+++.|+..++. . -+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 355677 9999999987754 2 36788899999999999999999999999999887545 455677777899999
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHH---HHHHHHHHhcCCHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW---TSRLAAYSRKKLYRRCL 199 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~ 199 (271)
|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++.+.. |+.... ..++..+...|++++|.
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 999999999987 4678899999999999999999999999998763 553211 22334445569999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccccccchhhh
Q 036275 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 200 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~~ 268 (271)
.+|+++.+. .+.+...+..+..++...|++++|...+++..+..+..... +..++...|+.+++...+
T Consensus 187 ~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999987 36688899999999999999999999999998876655544 455688899987765433
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.3e-14 Score=113.28 Aligned_cols=197 Identities=11% Similarity=0.046 Sum_probs=144.8
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPD----TFVINSM 115 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~l 115 (271)
|..+...+ .|++++|.+.|++..+.. .+...|..+..++...|++++|+..+++..+... .++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 45555566 999999999999998887 7888999999999999999999999998877531 112 5778899
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCC-------------------------CCCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 116 LNLYGRLGQFEKMEEVLTAMEKGS-------------------------YAADISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 116 i~~~~~~g~~~~a~~~~~~m~~~~-------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
...+...|++++|.+.+++..+.. .+.+...+..+...+...|++++|.+.++++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999988732 1223455666667777777777777777776
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 171 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
.... +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+..
T Consensus 166 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 166 IKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 6542 2245666777777777777777777777766643 3345666666777777777777777777665544
No 29
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=3.5e-15 Score=117.80 Aligned_cols=219 Identities=8% Similarity=-0.046 Sum_probs=172.4
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|.+.|+++.+.+ +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+..
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHH
Confidence 55666666 999999999999998876 5678999999999999999999999999998864 2356788899999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.|++++|.+.++++.+. .|+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...
T Consensus 124 ~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHH
Confidence 99999999999999885 3554444555566677799999999998776642 2333333 467777888888999999
Q ss_pred HHHHHHCCCC--C-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhhh
Q 036275 202 FEEMIDAGCY--P-DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 202 ~~~m~~~~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
++...+.... | +..++..+...+...|++++|...+++..+..+..+.....++...|+.++|++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 9887654211 1 14678888999999999999999999999988877777788889999999998765
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=7.8e-14 Score=108.76 Aligned_cols=192 Identities=8% Similarity=-0.037 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153 (271)
Q Consensus 74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 153 (271)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5778889999999999999999999998874 3467889999999999999999999999998863 4578889999999
Q ss_pred HHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275 154 YGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232 (271)
Q Consensus 154 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 232 (271)
|...|++++|.+.++++...+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988743445 45678889999999999999999999988764 4467889999999999999999
Q ss_pred HHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275 233 VTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 233 a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~ 268 (271)
|..+++++.+..+... ..+..+|.+.|+.++|.+.+
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999987655443 44566789999999998765
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=1.3e-13 Score=108.61 Aligned_cols=214 Identities=9% Similarity=-0.027 Sum_probs=172.4
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHhHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQFEKME 129 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 129 (271)
.|++++|++.|++..+.. +.+...+..+..++...|++++|+..+++..+.+..+ ....|..+...+...|++++|+
T Consensus 16 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 999999999999998875 4567789999999999999999999999998853222 2345889999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275 130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209 (271)
Q Consensus 130 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 209 (271)
+.+++..+.. +.+..++..+...|...|++++|.+.|++..+.. +.+...+..+...+...+++++|...+++..+..
T Consensus 95 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 95 QQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172 (272)
T ss_dssp HHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998863 4567899999999999999999999999998762 3356777777734555669999999999998863
Q ss_pred CCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHhcc---cc--------hhHHHHHHHhhccccccchhhhh
Q 036275 210 CYPDGGTAKVLISACSSEDQ---IEQVTTLVRTMHKDM---KT--------ALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 210 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~--------~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
+.+...+..+..++...|+ .++|...+++..+.. +. ....+-..|.+.|+.++|++.|.
T Consensus 173 -p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 173 -PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3446777778888888787 777888888876542 22 22335566889999999988763
No 32
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1e-12 Score=103.89 Aligned_cols=210 Identities=12% Similarity=-0.017 Sum_probs=178.8
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 117 (271)
+..+-..| .|++++|.+.|++..+. .+...+..+...+.. .+++++|+..|++..+.+ +...+..+..
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 33444445 89999999999999884 366788889999999 999999999999999886 7788888999
Q ss_pred HHHc----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275 118 LYGR----LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189 (271)
Q Consensus 118 ~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 189 (271)
.|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 9999 999999999999999875 77888999999999 999999999999998875 677888888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccch-hHHHHHHHhh---
Q 036275 190 SR----KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTA-LPIYFNLYGE--- 257 (271)
Q Consensus 190 ~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~--- 257 (271)
.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+... ...+-.+|.+
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 88 999999999999998875 46777888888888 999999999999988776532 3345566877
Q ss_pred -ccccccchhhh
Q 036275 258 -KGVARSNLGQY 268 (271)
Q Consensus 258 -~G~~~~a~~~~ 268 (271)
.|+.++|++.|
T Consensus 234 ~~~~~~~A~~~~ 245 (273)
T 1ouv_A 234 VTRNEKQAIENF 245 (273)
T ss_dssp SSCCSTTHHHHH
T ss_pred cccCHHHHHHHH
Confidence 89999998776
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.6e-14 Score=113.94 Aligned_cols=212 Identities=10% Similarity=-0.052 Sum_probs=172.5
Q ss_pred hcCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHH
Q 036275 52 SIYFSDAHAVFEEMKRLGI---TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM 128 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 128 (271)
.|++++|++.|+++.+... +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 7899999999999988631 2257788999999999999999999999998875 33688899999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
.+.+++..+.. +.+..++..+...|.+.|++++|.+.|+++... .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999863 456889999999999999999999999999875 455555555556667789999999999887765
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc-------chhHHHHHHHhhccccccchhhhh
Q 036275 209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK-------TALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 209 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
. +++...+ .+...+...++.++|...+++..+..+ .....+..+|.+.|+.++|++.|.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 3444444 466777888889999999998876544 233446677999999999998763
No 34
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.64 E-value=4.5e-14 Score=116.16 Aligned_cols=214 Identities=7% Similarity=-0.044 Sum_probs=164.8
Q ss_pred hcCHHHHHH-HHHHHHHcC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhH
Q 036275 52 SIYFSDAHA-VFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127 (271)
Q Consensus 52 ~g~~~~A~~-~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 127 (271)
.|++++|.+ .|++..+.. ...+...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 788899988 887655432 11135678889999999999999999999999875 3477889999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC--------------------------------
Q 036275 128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-------------------------------- 175 (271)
Q Consensus 128 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------------------------- 175 (271)
|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.....
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 999999998874 55788999999999999999999999998765321
Q ss_pred ---------------CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036275 176 ---------------KP---DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237 (271)
Q Consensus 176 ---------------~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 237 (271)
.| +..++..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12 46778888888888899999999888887753 445778888888888889999999998
Q ss_pred HHHHhcccch---hHHHHHHHhhccccccchhhh
Q 036275 238 RTMHKDMKTA---LPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 238 ~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+++.+..+.. ...+..+|.+.|+.++|++.|
T Consensus 275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8887655443 344566788888888888765
No 35
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.4e-14 Score=122.89 Aligned_cols=221 Identities=10% Similarity=0.003 Sum_probs=185.8
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|.+.|+++.+.+ |+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 55566666 999999999999998876 338899999999999999999999999998875 3366788999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.|++++|...+++..+.. +.+..++..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998874 4567889999999999999999999999988753 23567899999999999999999999
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHHhc---cCcHHHHHHHHHHHHhcccch---hHHHHHHHhhccccccchhhhh
Q 036275 202 FEEMIDAGC-YPD----GGTAKVLISACSS---EDQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 202 ~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
++++.+..- .++ ...+..+...+.. .|++++|...+++..+..+.. ...+..+|.+.|+.++|++.|.
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999876321 122 3478888999999 999999999999988765543 3446677999999999988763
No 36
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.5e-14 Score=119.47 Aligned_cols=154 Identities=10% Similarity=0.012 Sum_probs=96.4
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 190 (271)
++..+...+...|++++|...++++.+.. |+..++..+..++...|++++|.+.++++.... +.+..++..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 34445555556666666666666655542 225556666666666666666666666655542 224556667777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---hhHHHHHHHhhccccccchhh
Q 036275 191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---ALPIYFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~a~~~ 267 (271)
..|++++|...+++..+.. +.+...+..+...+...|++++|..+++++.+..+. ....+..+|.+.|+.++|++.
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777777776653 334566777777777777777777777777654433 233345567777777777765
Q ss_pred h
Q 036275 268 Y 268 (271)
Q Consensus 268 ~ 268 (271)
|
T Consensus 395 ~ 395 (514)
T 2gw1_A 395 Y 395 (514)
T ss_dssp H
T ss_pred H
Confidence 5
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=1.8e-13 Score=104.51 Aligned_cols=195 Identities=10% Similarity=0.020 Sum_probs=163.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275 71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150 (271)
Q Consensus 71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 150 (271)
+.++..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 3467788899999999999999999999998864 3367889999999999999999999999998863 5578889999
Q ss_pred HHHHHcC-CCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275 151 INIYGRG-GFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228 (271)
Q Consensus 151 i~~~~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 228 (271)
...+... |++++|.+.++++...+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999987433444 5788899999999999999999999998763 345788899999999999
Q ss_pred cHHHHHHHHHHHHhccc-chh---HHHHHHHhhccccccchhhh
Q 036275 229 QIEQVTTLVRTMHKDMK-TAL---PIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 229 ~~~~a~~~~~~~~~~~~-~~~---~~~~~~~~~~G~~~~a~~~~ 268 (271)
++++|..++++..+..+ ... ......+...|+.+++...+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999887655 333 33445577888887776543
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=6.5e-14 Score=108.38 Aligned_cols=194 Identities=9% Similarity=0.027 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 036275 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 151 (271)
.++..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456778888899999999999999999999864 3467889999999999999999999999998863 45788899999
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 231 (271)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999988763 3467889999999999999999999999988763 456788899999999999999
Q ss_pred HHHHHHHHHHhcccch---hHHHHHHHhhccccccchhhhh
Q 036275 232 QVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 232 ~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
+|...+++..+..+.. ...+..+|.+.|+.++|++.|.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999988765543 3445677999999999988763
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.2e-13 Score=107.71 Aligned_cols=194 Identities=12% Similarity=0.035 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCC--CCCC----hhh
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS--YAAD----IST 146 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~----~~~ 146 (271)
....|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|.+.+++..+.. ..++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999999887 688899999999999999999999999987642 1112 588
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhchhCC------------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 147 YNILINIYGRGGFIEKMEGLFQSLPAKR------------------------LKP-DVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g------------------------~~~-~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
+..+...+...|++++|.+.|++..... ..| +...+..+...+...|++++|...
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999988732 122 345788888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH---HHHHHHhhccccccchhhhh
Q 036275 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP---IYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~G~~~~a~~~~~ 269 (271)
+++..+.. +.+..++..+..++...|++++|...+++..+..+.... .+..+|.+.|+.++|++.|.
T Consensus 162 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 162 YTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99998864 456888999999999999999999999999876655443 45567999999999988763
No 40
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=7.2e-13 Score=98.40 Aligned_cols=169 Identities=11% Similarity=-0.018 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
++..|..+...+.+.|++++|++.|++..+... -+...+..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 566777777777777888888888877776642 256667777777777788888877777776653 445666777777
Q ss_pred HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 232 (271)
.+...++++.|.+.+.+..... +-+...+..+...+...|++++|.+.|++..+.. +-+..++..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777788888877777766542 2346677777777777888888888877777653 3456677777777777888888
Q ss_pred HHHHHHHHHhccc
Q 036275 233 VTTLVRTMHKDMK 245 (271)
Q Consensus 233 a~~~~~~~~~~~~ 245 (271)
|.+.|++..+..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 8888877766543
No 41
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.58 E-value=9.5e-13 Score=113.69 Aligned_cols=220 Identities=9% Similarity=0.011 Sum_probs=164.1
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------------------
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS------------------ 103 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------ 103 (271)
|..+..+| .|++++|++.|+++.+.+ |.+..++..+..++...|++++|...|+.+...
T Consensus 62 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (537)
T 3fp2_A 62 YSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNK 140 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 66666666 899999999999988876 567888888888888888888888776432100
Q ss_pred --------------------------------------------------------------------------------
Q 036275 104 -------------------------------------------------------------------------------- 103 (271)
Q Consensus 104 -------------------------------------------------------------------------------- 103 (271)
T Consensus 141 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 141 QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence
Q ss_pred ---------CCCCC--------HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 036275 104 ---------GLKPD--------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166 (271)
Q Consensus 104 ---------~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 166 (271)
...|+ ..++..+...+...|++++|...+++..+. .|+..++..+...+...|++++|.+.
T Consensus 221 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 221 STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 01111 123555556677788888888888888775 45577888888888888888888888
Q ss_pred HHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 167 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
++++.... +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..+++++.+..+.
T Consensus 299 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 299 FQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88877653 2357788888888888899999999888887753 334567888888888889999999998888766544
Q ss_pred h---hHHHHHHHhhccccccchhhh
Q 036275 247 A---LPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 247 ~---~~~~~~~~~~~G~~~~a~~~~ 268 (271)
. ...+..+|...|+.++|++.|
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3 344566788888888888765
No 42
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.58 E-value=5.2e-13 Score=115.31 Aligned_cols=213 Identities=10% Similarity=0.027 Sum_probs=175.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|.+.|+++.+.. |+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 899999999999998874 558889999999999999999999999998875 33678899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-- 209 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-- 209 (271)
+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99998864 4467889999999999999999999999988763 3356789999999999999999999999987532
Q ss_pred ---CCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHhcccch---hHHHHHHHhhccccccchhhhh
Q 036275 210 ---CYPDGGTAKVLISACSSE----------DQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 210 ---~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
.......+......+... |++++|...+++..+..+.. ...+..+|.+.|+.++|++.|.
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 111222344445566666 99999999999998765544 3445677999999999988763
No 43
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.57 E-value=2.3e-13 Score=116.35 Aligned_cols=209 Identities=11% Similarity=-0.022 Sum_probs=175.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 036275 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV-AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL 132 (271)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 132 (271)
.++++++.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +-+...|..+...|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4667777777665543 45888999999999999999 99999999998874 235788999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcC---------CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc--------CCH
Q 036275 133 TAMEKGSYAADISTYNILINIYGRG---------GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK--------KLY 195 (271)
Q Consensus 133 ~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~ 195 (271)
++..+. .|+...+..+...+... |++++|.+.|++..+.. +-+...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999986 47788999999999999 99999999999988763 23578899999999988 999
Q ss_pred HHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275 196 RRCLEIFEEMIDAGCY---PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 196 ~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~ 268 (271)
++|...|++..+.. + -+...+..+..++...|++++|.+.|++..+..+... ..+..++...|+.++|++.+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988853 2 4788899999999999999999999999887665543 44556788888888888754
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=4.8e-13 Score=111.00 Aligned_cols=219 Identities=10% Similarity=0.064 Sum_probs=180.2
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN-VAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 120 (271)
|+.+-..+ .|++++|++.|++..+.+ +-+...|+.+..++...|+ +++|+..|++..+.... +...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 66666666 899999999999999886 6689999999999999997 99999999999987533 7788999999999
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh-cCCHHHH-
Q 036275 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRC- 198 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a- 198 (271)
..|++++|+..|+++.+.. +.+...|..+..++.+.|++++|++.|+++.+... -+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHH
Confidence 9999999999999999874 55789999999999999999999999999988642 367899999999999 6665777
Q ss_pred ----HHHHHHHHHCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhcccch---hHHHHHHHhhcc---------c
Q 036275 199 ----LEIFEEMIDAGCYPDGGTAKVLISACSSED--QIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKG---------V 260 (271)
Q Consensus 199 ----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G---------~ 260 (271)
...+++.++.. +-+...|..+...+...| ++++|.+.+.++ +..+.. ...+..+|.+.| .
T Consensus 256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 47888887753 346778888888888888 689999999988 444433 334566787775 2
Q ss_pred cccchhhh
Q 036275 261 ARSNLGQY 268 (271)
Q Consensus 261 ~~~a~~~~ 268 (271)
.++|++.|
T Consensus 334 ~~~A~~~~ 341 (382)
T 2h6f_A 334 LNKALELC 341 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 36666654
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=2e-12 Score=95.93 Aligned_cols=165 Identities=10% Similarity=0.018 Sum_probs=144.9
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+-..| .|++++|++.|++..+.+ |-++.+|..+..++.+.|++++|...+.+....... +...+..+...+..
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHH
Confidence 77777778 999999999999999886 668999999999999999999999999999887533 66778888899999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.++++.+.+.+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+..+|...|++++|.+.
T Consensus 86 ~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999988763 5568899999999999999999999999988763 33678899999999999999999999
Q ss_pred HHHHHHCCCCCCH
Q 036275 202 FEEMIDAGCYPDG 214 (271)
Q Consensus 202 ~~~m~~~~~~p~~ 214 (271)
|++.++. .|+.
T Consensus 164 ~~~al~~--~p~~ 174 (184)
T 3vtx_A 164 FKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHT--THHH
T ss_pred HHHHHhC--CccC
Confidence 9998875 4544
No 46
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.54 E-value=1.8e-15 Score=125.46 Aligned_cols=184 Identities=12% Similarity=0.036 Sum_probs=65.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|.++++++. .+.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.+
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 688999999999882 335999999999999999999999965 35777999999999999999999998
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY 211 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 211 (271)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8877774 4567888999999999999999998885 367789999999999999999999999976
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhh
Q 036275 212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~ 267 (271)
..|..+..++.+.|++++|.+.++++ ..+.+|.....++...|+++.|...
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHH
Confidence 36999999999999999999999999 3677788899999999999888543
No 47
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=5.5e-12 Score=101.71 Aligned_cols=187 Identities=9% Similarity=0.018 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCHhHHHHHHH
Q 036275 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD-TF-VINSMLNLYGRLGQFEKMEEVLT 133 (271)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~ 133 (271)
++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 889999998887312446778888888888999999999999998875 343 33 78888888888999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHH-cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 036275 134 AMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CY 211 (271)
Q Consensus 134 ~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~ 211 (271)
+..+.. +.+...|........ ..|+.++|.++|++..+.. +-+...|..++..+.+.|++++|..+|++..+.. +.
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 888764 344555544443322 3689999999999887652 2357788888888888999999999999988853 35
Q ss_pred C--CHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275 212 P--DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 212 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
| ....|..++......|+.+.|..+++++.+..+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 4 4667888888888889999999999988876654
No 48
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=7.7e-13 Score=105.99 Aligned_cols=164 Identities=13% Similarity=0.156 Sum_probs=132.6
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CC
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRL-------GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS------GL-KP 107 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~~ 107 (271)
|..+...+ .|++++|..+|+++.+. ..+.....+..+...+...|++++|...+++..+. +- +.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 56666666 99999999999998773 33446778889999999999999999999988764 22 22
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC------C
Q 036275 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG------SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK------R 174 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 174 (271)
....+..+...+...|++++|.+.+++..+. +-.| ...++..+...+...|++++|.+.++++... +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888999999999999999999988764 2223 4567889999999999999999999988753 2
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 175 LKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 175 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
..|+ ..++..+...+...|++++|...+++..+
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 45788889999999999999999998875
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=6.4e-13 Score=113.64 Aligned_cols=192 Identities=10% Similarity=0.025 Sum_probs=166.6
Q ss_pred chHHHHHH--hcCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYF-SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120 (271)
Q Consensus 44 y~~ll~~~--~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 120 (271)
|..+-..| .|++ ++|++.|++..+.+ +.+...|..+..+|.+.|++++|...|++..+. .|+...+..+...+.
T Consensus 105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHH
Confidence 55555555 9999 99999999998876 567999999999999999999999999999987 467788999999999
Q ss_pred cc---------CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC--------CCHHHHHHHHHhchhCCCC--CCHHH
Q 036275 121 RL---------GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG--------GFIEKMEGLFQSLPAKRLK--PDVVT 181 (271)
Q Consensus 121 ~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~--~~~~~ 181 (271)
.. |++++|++.+++..+.. +.+...|..+..+|... |++++|.+.|++..+.... -+...
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence 99 99999999999998873 55688999999999998 9999999999999875210 37889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 240 (271)
|..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|.+.+.++
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999998764 445677888889999999999998876655
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.6e-11 Score=98.92 Aligned_cols=193 Identities=10% Similarity=0.017 Sum_probs=139.2
Q ss_pred CCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 72 PTMKSHMLLLTAYS-------KTGNV-------AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 72 ~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
.++..|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+.+.|++++|.++|++..+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34455555554443 35765 88999999988731133566788889999999999999999999888
Q ss_pred CCCCCC-hh-hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH
Q 036275 138 GSYAAD-IS-TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS-RKKLYRRCLEIFEEMIDAGCYPDG 214 (271)
Q Consensus 138 ~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~ 214 (271)
. .|+ .. +|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+.++|..+|++..+.. +-+.
T Consensus 128 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 203 (308)
T 2ond_A 128 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP 203 (308)
T ss_dssp S--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCH
T ss_pred c--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 5 443 44 78888899999999999999999988763 234445543333322 3689999999999887752 3467
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcc--c-----chhHHHHHHHhhccccccchhhh
Q 036275 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDM--K-----TALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-----~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
..|..++..+.+.|+.++|..+|++..+.. . ..+..++..+.+.|+.++|...+
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788888888889999999999999988742 1 13444566777888888776554
No 51
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=4.1e-12 Score=93.67 Aligned_cols=167 Identities=10% Similarity=0.027 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153 (271)
Q Consensus 74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 153 (271)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456666777777788888888777776653 2356667777777778888888888887777652 4456777777778
Q ss_pred HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036275 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233 (271)
Q Consensus 154 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 233 (271)
+...|++++|.+.++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888776652 3356677777778888888888888888877653 34567777777788888888888
Q ss_pred HHHHHHHHhcc
Q 036275 234 TTLVRTMHKDM 244 (271)
Q Consensus 234 ~~~~~~~~~~~ 244 (271)
...+++..+..
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 88888776543
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=4.1e-11 Score=94.63 Aligned_cols=184 Identities=15% Similarity=0.069 Sum_probs=162.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----LG 123 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g 123 (271)
.+++++|.+.|++..+.+ ++..+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 579999999999999876 78889999999999 999999999999999875 77888899999999 99
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----cCCH
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR----KKLY 195 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 195 (271)
++++|++.+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 9999999999999875 56778888888988 999999999999988874 57788899999999 9999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccchhHH
Q 036275 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTALPI 250 (271)
Q Consensus 196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 250 (271)
++|...+++..+.+ +...+..+...+.. .++.++|.+.+++..+.++.....
T Consensus 203 ~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 203 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999998875 36677888888888 999999999999998887655443
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=9.4e-12 Score=97.94 Aligned_cols=203 Identities=8% Similarity=-0.041 Sum_probs=161.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITP--TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 119 (271)
|..+...| .|++++|++.|++..+....+ ....|..+...+...|++++|+..|++..+... .+...+..+...+
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHH
Confidence 56666666 999999999999998843111 244588999999999999999999999988753 3567899999999
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC---HH
Q 036275 120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL---YR 196 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~ 196 (271)
...|++++|.+.+++..+.. +.+...+..+...+...+++++|.+.|+++.+.. +.+...+..+...+...|+ ++
T Consensus 119 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~ 196 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQG 196 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSC
T ss_pred HHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999998872 4567788888734444569999999999988763 2246788888888888888 88
Q ss_pred HHHHHHHHHHHCC-CCCC------HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH
Q 036275 197 RCLEIFEEMIDAG-CYPD------GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249 (271)
Q Consensus 197 ~a~~~~~~m~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 249 (271)
+|...+++..+.. -.|+ ..+|..+...+...|++++|.+.+++..+..+....
T Consensus 197 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence 8888888876531 1233 257788888999999999999999999887665443
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=7.9e-12 Score=92.13 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=139.5
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 44455555 999999999999987664 5578899999999999999999999999998774 3467888999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998863 5678889999999999999999999999988763 34678899999999999999999999
Q ss_pred HHHHHHC
Q 036275 202 FEEMIDA 208 (271)
Q Consensus 202 ~~~m~~~ 208 (271)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9998764
No 55
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=2.2e-12 Score=103.32 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=138.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----
Q 036275 71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-------GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG----- 138 (271)
Q Consensus 71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 138 (271)
+.+..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345778889999999999999999999998873 22334567888999999999999999999988754
Q ss_pred -CC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 036275 139 -SY-AADISTYNILINIYGRGGFIEKMEGLFQSLPAK------RLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA- 208 (271)
Q Consensus 139 -~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 208 (271)
+- +....++..+...|...|++++|.+.++++... +-.| ...++..+...+...|++++|...+++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 234678889999999999999999999988754 2222 3457888899999999999999999998763
Q ss_pred -----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 209 -----GCYP-DGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 209 -----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
+..| ...++..+...+...|++++|..+++++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2123 345678888899999999999999999875
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=3.4e-11 Score=99.84 Aligned_cols=197 Identities=5% Similarity=0.005 Sum_probs=163.8
Q ss_pred chHHHHHH--hcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275 44 PNLFVFIF--SIY-FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120 (271)
Q Consensus 44 y~~ll~~~--~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 120 (271)
|+.+-.++ .|+ +++|++.|++..+.+ +-+...|..+..++...|++++|+..|+++.+... -+...|..+..++.
T Consensus 134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~ 211 (382)
T 2h6f_A 134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQ 211 (382)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHH
Confidence 66666666 886 999999999999987 66899999999999999999999999999998753 37788999999999
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-CCCHHHH-----HHHHHhchhCCCCCCHHHHHHHHHHHHhcC-
Q 036275 121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKM-----EGLFQSLPAKRLKPDVVTWTSRLAAYSRKK- 193 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g- 193 (271)
..|++++|+..++++.+.. +.+...|+.+..++.+ .|..++| ++.|++..... +-+...|..+...+...|
T Consensus 212 ~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 212 EFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCG
T ss_pred HcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCc
Confidence 9999999999999999874 5578999999999999 6665777 58888877653 225678988888888888
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------cHHHHHHHHHHH-Hhcccc
Q 036275 194 -LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED---------QIEQVTTLVRTM-HKDMKT 246 (271)
Q Consensus 194 -~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~-~~~~~~ 246 (271)
++++|.+.+.++ +. .+.+...+..+...+.+.| ..++|.++++++ .+.++.
T Consensus 290 ~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp GGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred cchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch
Confidence 689999999888 43 2456778888888888764 358999999999 665544
No 57
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.43 E-value=1.8e-12 Score=102.18 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC------
Q 036275 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS------GLKP-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG------ 138 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 138 (271)
....++..+...+...|++++|+..+++..+. +-.| ...++..+...+...|++++|.+.+++..+.
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 34666777777777778888887777776643 1122 2345777777777778888877777776543
Q ss_pred C-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 139 S-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAK------RLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 139 ~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
. .+....++..+...|...|++++|.+.+++.... +-.| ...++..+...+...|++++|...+++..+
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1223566777777777888888887777776543 1122 234667777777777888887777777654
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=4e-11 Score=92.05 Aligned_cols=186 Identities=8% Similarity=-0.000 Sum_probs=136.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|++.|++..+..-+++...+..+..++...|++++|+..+++..+.... +...+..+...+...|++++|.+.
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~ 98 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKNNQEYIAT 98 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcccHHHHHHH
Confidence 8999999999998888763377788888888888999999999999888877422 556788888889999999999999
Q ss_pred HHHHHhCCCCCCh-------hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 036275 132 LTAMEKGSYAADI-------STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD---VVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 132 ~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
+++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+...+...|+ ..
T Consensus 99 ~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~-----~~ 170 (228)
T 4i17_A 99 LTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGA-----DV 170 (228)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHH-----HH
Confidence 98888753 3344 45777888888899999999999988775 454 4566777777765443 34
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH
Q 036275 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP 249 (271)
Q Consensus 202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 249 (271)
++++...+ ..+...|..... ...+.+++|...+++..+..+....
T Consensus 171 ~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 171 LRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 45555443 334444544432 3456789999999999887665443
No 59
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=8.4e-12 Score=111.44 Aligned_cols=166 Identities=5% Similarity=-0.071 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
++.+|+.+...+.+.|++++|++.|++..+... -+...+..+..+|.+.|++++|++.|++..+.. +.+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456677777777777777777777777766532 245667777777777777777777777776652 334667777777
Q ss_pred HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 232 (271)
+|...|++++|++.|++..+.. +-+..+|..+..+|...|++++|.+.|++.++.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 7777777777777777766542 1245667777777777777777777777766643 2345667777777777777777
Q ss_pred HHHHHHHHHh
Q 036275 233 VTTLVRTMHK 242 (271)
Q Consensus 233 a~~~~~~~~~ 242 (271)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=2.4e-11 Score=108.48 Aligned_cols=159 Identities=11% Similarity=0.012 Sum_probs=141.7
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|+.+-..| .|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+... -+...|..+..++..
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 77777777 999999999999999886 55789999999999999999999999999998753 267889999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
.|++++|++.|++..+.. +-+...|+.+..+|...|++++|++.|++..+. .| +...+..+..++...|++++|.+
T Consensus 90 ~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHH
Confidence 999999999999998863 456889999999999999999999999998876 34 47889999999999999999998
Q ss_pred HHHHHHH
Q 036275 201 IFEEMID 207 (271)
Q Consensus 201 ~~~~m~~ 207 (271)
.+++..+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=6.3e-12 Score=104.96 Aligned_cols=216 Identities=12% Similarity=-0.006 Sum_probs=151.8
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHcc
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTM----KSHMLLLTAYSKTGNVAKCEGVINQMHKS----GL-KPDTFVINSMLNLYGRL 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~ 122 (271)
.|++++|++.|+++.+.+ +.+. ..|..+...+...|++++|+..+++..+. +. ......+..+...|...
T Consensus 61 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 899999999999988874 3343 46788888888999999999988877653 21 22345677888888899
Q ss_pred CCHhHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHcCCC-----------------HHHHHHHHHhchhC----CCC
Q 036275 123 GQFEKMEEVLTAMEKG----SY-AADISTYNILINIYGRGGF-----------------IEKMEGLFQSLPAK----RLK 176 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~----g~~ 176 (271)
|++++|...+++..+. +- +....++..+...|...|+ +++|.+.+++.... +-.
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999888876643 11 1234577788888888888 88888888775432 111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc-----
Q 036275 177 P-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-YPD----GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK----- 245 (271)
Q Consensus 177 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----- 245 (271)
+ ...++..+...+...|++++|...+++..+..- .++ ..++..+...+...|++++|...+++..+...
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 1 124677778888888888888888887764210 112 23667777788888888888888887754322
Q ss_pred ----chhHHHHHHHhhccccccchhhh
Q 036275 246 ----TALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 246 ----~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
.....+..+|...|+.++|++.|
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12333556678888888887665
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=8.5e-12 Score=104.19 Aligned_cols=226 Identities=11% Similarity=-0.070 Sum_probs=170.0
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRL----G-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GL-KPDTFV 111 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~ 111 (271)
|..+...| .|++++|.+.|++..+. + .+.....+..+...|...|++++|...+++..+. +- .....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 44555555 99999999999988654 1 1335677888999999999999999999887654 11 223456
Q ss_pred HHHHHHHHHccCC-----------------HhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHh
Q 036275 112 INSMLNLYGRLGQ-----------------FEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQS 169 (271)
Q Consensus 112 ~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 169 (271)
+..+...|...|+ +++|.+.+++..+. +..+ ...++..+...|...|++++|.+.+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8888999999999 99999998876542 2112 345788899999999999999999998
Q ss_pred chhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275 170 LPAKRL-KPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC----Y-PDGGTAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 170 m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
...... .++ ..++..+...+...|++++|...+++..+..- . ....++..+...+...|++++|..++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765310 012 23788889999999999999999998765311 0 1146778888899999999999999998
Q ss_pred HHhcccc---------hhHHHHHHHhhccccccchhhhh
Q 036275 240 MHKDMKT---------ALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 240 ~~~~~~~---------~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
..+.... ....+..+|.+.|+.++|++.|.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8653221 33445677999999999988763
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=4.2e-10 Score=86.28 Aligned_cols=155 Identities=6% Similarity=-0.083 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 036275 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 151 (271)
.|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677777777888888888888888877776543566666667777888888888888888877753 33566777788
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDV-------VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD---GGTAKVLI 221 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~ 221 (271)
.+|...|++++|.+.+++..+.. +.+. ..|..+...+...|++++|...+++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 88888888888888888777642 1133 45777777778888888888888887765 344 45566666
Q ss_pred HHHhccCcH
Q 036275 222 SACSSEDQI 230 (271)
Q Consensus 222 ~~~~~~g~~ 230 (271)
.++...|+.
T Consensus 161 ~~~~~~~~~ 169 (228)
T 4i17_A 161 VLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655554
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=3.4e-11 Score=99.92 Aligned_cols=218 Identities=9% Similarity=-0.095 Sum_probs=163.9
Q ss_pred hcCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C----CCCHHHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRL----GITP-TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG--L----KPDTFVINSMLNLYG 120 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~~~~~~li~~~~ 120 (271)
.|++++|.+.|++..+. +-++ ...+|..+...|...|++++|+..+++..+.. . .....+++.+...|.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 89999999999999764 1111 35678899999999999999999998876531 1 112356888999999
Q ss_pred ccCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CC-CCCHHHHHHHHHHHH
Q 036275 121 RLGQFEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK----RL-KPDVVTWTSRLAAYS 190 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~ 190 (271)
..|++++|.+.+++..+. +-++ ...++..+...|...|++++|.+.+++.... +. +....++..+...+.
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 999999999999887643 1111 1357889999999999999999999988762 22 223567899999999
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHhcc--cchhHHHHHHHhhcccc
Q 036275 191 RKKLYRRCLEIFEEMIDA----GCYPDGGTAKVLISACSSEDQ---IEQVTTLVRTMHKDM--KTALPIYFNLYGEKGVA 261 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~G~~ 261 (271)
..|++++|...+++..+. +-+.....+..+...+...|+ .++|..++++..... ......+..+|.+.|+.
T Consensus 276 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~ 355 (383)
T 3ulq_A 276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNF 355 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCH
Confidence 999999999999987652 111222345667777888998 778888877763211 12234466789999999
Q ss_pred ccchhhhh
Q 036275 262 RSNLGQYI 269 (271)
Q Consensus 262 ~~a~~~~~ 269 (271)
++|++.|.
T Consensus 356 ~~A~~~~~ 363 (383)
T 3ulq_A 356 QKASAYFL 363 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988763
No 65
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=4.2e-10 Score=97.46 Aligned_cols=207 Identities=10% Similarity=0.021 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSK-------TGNVA-------KCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
++|..+|++..... |.++..|...+..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36777888877764 5678888888888775 68876 888999888863223457788888888889
Q ss_pred cCCHhHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH-HHHhcCCHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAAD-I-STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA-AYSRKKLYRRC 198 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a 198 (271)
.|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|.++|++..+... .+...|..... .+...|+.++|
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHH
Confidence 99999999999998885 443 3 4788888888889999999999998877521 12233332222 23468899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc-------hhHHHHHHHhhccccccchhh
Q 036275 199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT-------ALPIYFNLYGEKGVARSNLGQ 267 (271)
Q Consensus 199 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~G~~~~a~~~ 267 (271)
..+|+...+.. +-+...+..++..+.+.|+.++|..+|++....++. .+..++....+.|+.+.+...
T Consensus 411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 485 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999887752 335778888888888899999999999998775422 233445556667877766543
No 66
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=1e-10 Score=93.04 Aligned_cols=204 Identities=10% Similarity=-0.050 Sum_probs=149.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 036275 58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136 (271)
Q Consensus 58 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 136 (271)
|+..|+++.+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776655 56666777888999999999999999999877654 2356678888999999999999999999998
Q ss_pred hCCCCC-----ChhhHHHHHHH--HHc--CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 137 KGSYAA-----DISTYNILINI--YGR--GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 137 ~~~~~~-----~~~~~~~li~~--~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
+. .| +..+...|+.+ ... .++.++|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 86 56 24555556655 332 34899999999998765 45544445555588999999999999987654
Q ss_pred C-----CC----CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhhhh
Q 036275 208 A-----GC----YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 208 ~-----~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~~ 269 (271)
. +. +-|..+...+|......|+ +|.+++.++.+.. +..+.+.+.-.+...++++...|.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp~i~d~~~k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHAFIKHHQEIDAKFDELVRKYD 307 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHhc
Confidence 2 11 3356667677766666776 8889999988776 344455666666666666666553
No 67
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=8.9e-11 Score=93.90 Aligned_cols=202 Identities=9% Similarity=-0.013 Sum_probs=147.6
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRL----GITP-TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL---KPD--TFV 111 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~ 111 (271)
|+.....| .|++++|.+.|.+..+. |-++ ...+|+.+..+|.+.|++++|+..|++..+... .+. ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55556667 99999999999988654 3222 257899999999999999999999988765411 111 357
Q ss_pred HHHHHHHHHcc-CCHhHHHHHHHHHHhCC----CCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH------
Q 036275 112 INSMLNLYGRL-GQFEKMEEVLTAMEKGS----YAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV------ 179 (271)
Q Consensus 112 ~~~li~~~~~~-g~~~~a~~~~~~m~~~~----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------ 179 (271)
++.+...|... |++++|+..|++..+.. -.+. ..++..+...+.+.|++++|...|++..........
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88899999996 99999999999887631 1011 356888999999999999999999998875332221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh--ccCcHHHHHHHHHHHHhcccch
Q 036275 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG------GTAKVLISACS--SEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
.+|..+..++...|++++|...+++..+. .|+. ..+..++.++. ..+++++|...|+++.+..+..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 25777888899999999999999998763 2332 13445566664 5677888888887776554433
No 68
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.30 E-value=4.8e-09 Score=89.93 Aligned_cols=177 Identities=11% Similarity=0.008 Sum_probs=109.8
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCC
Q 036275 53 IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----LGQ 124 (271)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~ 124 (271)
+++++|.+.|++..+.| ++..+..|...|.. .++.++|...|++..+.| +...+..|...|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 56777777777776654 45666666666766 677777777777776654 44555556666665 567
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 036275 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR----KKLYR 196 (271)
Q Consensus 125 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~ 196 (271)
+++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.+
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHH
Confidence 777777777766654 45555666666665 566777777776666553 45566666666665 56666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcc
Q 036275 197 RCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 197 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 244 (271)
+|.+.|++..+.| +...+..+...+.. .++.++|..++++..+.+
T Consensus 205 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 205 ISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 6666666665543 33444445544443 556666666666555443
No 69
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=3.4e-10 Score=78.58 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 155 (271)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566666777777777777777766553 2245566666666777777777777777666543 344556666666666
Q ss_pred cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 156 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
..|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777766665542 22455566666666666666666666666554
No 70
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=4.2e-10 Score=78.08 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=110.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|.++|+++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44555666 999999999999998875 5578889999999999999999999999998875 3467788899999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999998863 456788899999999999999999999988764
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=5.4e-11 Score=95.86 Aligned_cols=225 Identities=12% Similarity=-0.034 Sum_probs=167.2
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRL----GI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPD----TFV 111 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~ 111 (271)
|..+...| .|++++|.+.+++..+. +. +....++..+...+...|++++|...+++..+... .++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 55556666 99999999999987543 21 22366788899999999999999999988765311 112 347
Q ss_pred HHHHHHHHHccCC--------------------HhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHH
Q 036275 112 INSMLNLYGRLGQ--------------------FEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGL 166 (271)
Q Consensus 112 ~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 166 (271)
+..+...+...|+ +++|.+.+++..+. +..+ ...++..+...+...|++++|.+.
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 8888899999999 99999998876532 2111 245788889999999999999999
Q ss_pred HHhchhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHH
Q 036275 167 FQSLPAKRL-KPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-YPD----GGTAKVLISACSSEDQIEQVTTL 236 (271)
Q Consensus 167 ~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~ 236 (271)
+++...... .++ ..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 998764210 012 23788888999999999999999998764210 112 45677888889999999999999
Q ss_pred HHHHHhcccc---------hhHHHHHHHhhccccccchhhh
Q 036275 237 VRTMHKDMKT---------ALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 237 ~~~~~~~~~~---------~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+++..+.... ....+..+|.+.|+.++|++.|
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9987653221 2344667799999999998876
No 72
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=9.5e-11 Score=97.30 Aligned_cols=216 Identities=13% Similarity=-0.005 Sum_probs=112.5
Q ss_pred hcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHcc
Q 036275 52 SIYFSDAHAVFEEMKRLGITPT----MKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPD-TFVINSMLNLYGRL 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~ 122 (271)
.|++++|...|++..+.+ +.+ ...|..+...+...|++++|...+++.... +..|. ...+..+...+...
T Consensus 22 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 666666666666666553 223 245556666666666666666666654332 11111 23455566666666
Q ss_pred CCHhHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHcCCC--------------------HHHHHHHHHhchhC----
Q 036275 123 GQFEKMEEVLTAMEKG----SYA-ADISTYNILINIYGRGGF--------------------IEKMEGLFQSLPAK---- 173 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~---- 173 (271)
|++++|...+++..+. +-+ ....++..+...|...|+ +++|.+.+++....
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666655432 100 013355566666666666 66666666554321
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc--
Q 036275 174 RLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPD----GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK-- 245 (271)
Q Consensus 174 g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 245 (271)
+-.| ...++..+...+...|++++|...+++..+.. -.++ ..++..+...+...|++++|...+++..+...
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 1111 12345555566666666666666666554310 0111 12455555566666666666666665543211
Q ss_pred -------chhHHHHHHHhhccccccchhhh
Q 036275 246 -------TALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 246 -------~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
.....+..+|...|+.++|++.|
T Consensus 261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 11222344456666666665544
No 73
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.27 E-value=1.2e-09 Score=101.43 Aligned_cols=194 Identities=10% Similarity=0.092 Sum_probs=103.6
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+-.++ .|++++|++.|.+. -|...|..++.++.+.|++++|.++|...++.. ++....+.++.+|++
T Consensus 1108 WsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1108 WSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 55555555 55666666655332 244555556666666666666666665544432 222222235555555
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.
T Consensus 1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 55555332221 1 234444555666666666666666666653 2566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhhh
Q 036275 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+++. .+..+|..+-.+|...|++..|...... ....+.....+...|.+.|.+++|+..+
T Consensus 1244 arKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1244 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred HHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6553 2345555555555555555555554443 1122223345566677777777777654
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=4.9e-11 Score=96.10 Aligned_cols=216 Identities=13% Similarity=0.001 Sum_probs=163.7
Q ss_pred hcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHcc
Q 036275 52 SIYFSDAHAVFEEMKRLGITPT----MKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTFVINSMLNLYGRL 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~ 122 (271)
.|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +..| ....+..+...+...
T Consensus 18 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 999999999999998874 334 467888999999999999999999887543 2222 245688889999999
Q ss_pred CCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCC--------------------HHHHHHHHHhchhC----
Q 036275 123 GQFEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGF--------------------IEKMEGLFQSLPAK---- 173 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~---- 173 (271)
|++++|...+++..+. +-++ ...++..+...+...|+ +++|.+.+++....
T Consensus 97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~ 176 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999887653 1111 13478889999999999 99999999876532
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc-
Q 036275 174 RLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-YPD----GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT- 246 (271)
Q Consensus 174 g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 246 (271)
+..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..++++..+....
T Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (338)
T 3ro2_A 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 256 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence 1111 134688888899999999999999998764210 112 237778888899999999999999987643221
Q ss_pred --------hhHHHHHHHhhccccccchhhh
Q 036275 247 --------ALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 247 --------~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
....+..+|...|+.++|++.|
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (338)
T 3ro2_A 257 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 286 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2334566789999999998765
No 75
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.27 E-value=7.4e-09 Score=88.72 Aligned_cols=202 Identities=12% Similarity=0.068 Sum_probs=136.3
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----LG 123 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g 123 (271)
.+++++|.+.|++..+.| ++..+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 357888888888887765 55667777777777 678888888888887765 45566667777766 67
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----cCCH
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR----KKLY 195 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 195 (271)
+.++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 7888888888877764 56677777777776 777888888888777654 55666666666665 6777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccch-hHHHHHHHhhc-----cccccch
Q 036275 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTA-LPIYFNLYGEK-----GVARSNL 265 (271)
Q Consensus 196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~-----G~~~~a~ 265 (271)
++|...|++..+.| +...+..+...+.. .++.++|..++++..+.+.+. ...+-.+|... ++.++|+
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 77777777766654 34455555555555 677777777777766544322 22333445444 5555555
Q ss_pred hhh
Q 036275 266 GQY 268 (271)
Q Consensus 266 ~~~ 268 (271)
..|
T Consensus 317 ~~~ 319 (490)
T 2xm6_A 317 SWY 319 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 76
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.27 E-value=1.8e-10 Score=102.81 Aligned_cols=188 Identities=9% Similarity=-0.012 Sum_probs=152.2
Q ss_pred HHHHH-hcCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275 47 FVFIF-SIYFSDAHAVFEEMK--------RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117 (271)
Q Consensus 47 ll~~~-~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 117 (271)
++.++ .|++++|++.+++.. +.. +.+...+..+..++.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 398 ~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 475 (681)
T 2pzi_A 398 VLQATVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAV 475 (681)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHH
T ss_pred HhhcccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHH
Confidence 34446 999999999999998 443 5678889999999999999999999999998874 336788999999
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036275 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR 197 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 197 (271)
++...|++++|++.|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.. +-+...|..+..++...|++++
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998863 4567889999999999999999 99999988763 2357889999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc--------HHHHHHHHHHHH
Q 036275 198 CLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQ--------IEQVTTLVRTMH 241 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~ 241 (271)
|...|++..+. .|+ ...+..+..++...++ +++|.+.+..+.
T Consensus 553 A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 553 AVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99999998775 455 5667777777766444 555555555443
No 77
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.27 E-value=4.5e-09 Score=79.88 Aligned_cols=186 Identities=10% Similarity=0.049 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHhHHHHH
Q 036275 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG----QFEKMEEV 131 (271)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~ 131 (271)
.+|.+.|++..+.| ++..+..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888876 77889999999999999999999999999875 56777788888887 6 89999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLK-PDVVTWTSRLAAYSR----KKLYRRCLEIF 202 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~a~~~~ 202 (271)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998875 67788888888987 89999999999999887521 026788899999988 88999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc-C-----cHHHHHHHHHHHHhcccchhHHHHH
Q 036275 203 EEMIDAGCYPDGGTAKVLISACSSE-D-----QIEQVTTLVRTMHKDMKTALPIYFN 253 (271)
Q Consensus 203 ~~m~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~~~~~~~~ 253 (271)
++..+. ..+...+..|...|... | +.++|..++++..+.+.......+.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999886 23444566666666542 3 8999999999998887665544443
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=5.6e-10 Score=92.45 Aligned_cols=217 Identities=11% Similarity=0.010 Sum_probs=162.5
Q ss_pred hcCHHHHHHHHHHHHHcC-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CC-CHHHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLG-ITP----TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GL-KP-DTFVINSMLNLYG 120 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~-~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~-~~~~~~~li~~~~ 120 (271)
.|++++|+..|++..+.. -.+ ...++..+...|...|+++.|...+++..+. +. .+ ...+++.+...|.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 999999999999987642 112 3567888999999999999999999887653 11 11 2456888999999
Q ss_pred ccCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----CCCCCCHHHHHHHHHHHH
Q 036275 121 RLGQFEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPA-----KRLKPDVVTWTSRLAAYS 190 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~li~~~~ 190 (271)
..|++++|.+.+++..+. +-++ ...++..+...|...|++++|.+.+++... .. +....++..+...+.
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLC 272 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHH
Confidence 999999999999887652 2111 245788899999999999999999999876 32 223678889999999
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHhcc--cchhHHHHHHHhhcccc
Q 036275 191 RKKLYRRCLEIFEEMIDA----GCYPDGGTAKVLISACSSEDQ---IEQVTTLVRTMHKDM--KTALPIYFNLYGEKGVA 261 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~G~~ 261 (271)
..|++++|...+++..+. +-+.....+..+...+...++ +.+|..++++..... ......+...|.+.|+.
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~ 352 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHF 352 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCH
Confidence 999999999999998763 112223455666666778888 777777777632211 11234467789999999
Q ss_pred ccchhhhh
Q 036275 262 RSNLGQYI 269 (271)
Q Consensus 262 ~~a~~~~~ 269 (271)
++|++.|.
T Consensus 353 ~~A~~~~~ 360 (378)
T 3q15_A 353 EQAAAFYR 360 (378)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
No 79
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.25 E-value=3e-11 Score=100.35 Aligned_cols=225 Identities=11% Similarity=-0.052 Sum_probs=165.1
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRL----GIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPD----TFV 111 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~ 111 (271)
|..+...| .|++++|...|++..+. +.+ ....++..+...+...|++++|...+++..+... .++ ..+
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 44555566 99999999999987543 211 2356788888999999999999999988765411 011 347
Q ss_pred HHHHHHHHHccCC--------------------HhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHH
Q 036275 112 INSMLNLYGRLGQ--------------------FEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGL 166 (271)
Q Consensus 112 ~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 166 (271)
+..+...+...|+ +++|.+.+++..+. +..+ ...++..+...|...|++++|.+.
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 8888899999999 99999998876542 2112 245788889999999999999999
Q ss_pred HHhchhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 036275 167 FQSLPAKRL-KPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA----GCYPD-GGTAKVLISACSSEDQIEQVTTL 236 (271)
Q Consensus 167 ~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 236 (271)
+++...... .++ ..++..+...+...|++++|...+++..+. +..+. ..++..+...+...|++++|...
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 998764210 112 237888889999999999999999887642 11111 45777888889999999999999
Q ss_pred HHHHHhccc---------chhHHHHHHHhhccccccchhhh
Q 036275 237 VRTMHKDMK---------TALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 237 ~~~~~~~~~---------~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+++..+... .....+..+|...|+.++|++.|
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998765321 12334566788999999998776
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=4.2e-10 Score=89.94 Aligned_cols=200 Identities=7% Similarity=-0.050 Sum_probs=145.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHhHH
Q 036275 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPD-TFVINSMLNLYGRLGQFEKM 128 (271)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a 128 (271)
++++|...|.+. ...|...|++++|...|++..+. |-.++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777766655 45677899999999999887653 32222 46789999999999999999
Q ss_pred HHHHHHHHhC----CCCC-ChhhHHHHHHHHHcC-CCHHHHHHHHHhchhCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 036275 129 EEVLTAMEKG----SYAA-DISTYNILINIYGRG-GFIEKMEGLFQSLPAKRLK-PD----VVTWTSRLAAYSRKKLYRR 197 (271)
Q Consensus 129 ~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~ 197 (271)
+..+++..+. |-.. ...+++.+..+|... |++++|...|++....... .+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999887653 2111 145788999999996 9999999999987653110 01 3568889999999999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh--------HHHHHHHh--hcccc
Q 036275 198 CLEIFEEMIDAGCYPDG------GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL--------PIYFNLYG--EKGVA 261 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~~~--~~G~~ 261 (271)
|...+++..+....... ..+..+..++...|++++|...+++..+..+... ..+...|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999885432221 2567777888999999999999999876444321 12334443 45667
Q ss_pred ccchhhh
Q 036275 262 RSNLGQY 268 (271)
Q Consensus 262 ~~a~~~~ 268 (271)
++|+..|
T Consensus 257 ~~A~~~~ 263 (292)
T 1qqe_A 257 SEHCKEF 263 (292)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777766
No 81
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=1.8e-09 Score=93.54 Aligned_cols=189 Identities=10% Similarity=0.039 Sum_probs=151.5
Q ss_pred cCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHccC
Q 036275 53 IYFS-------DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD-T-FVINSMLNLYGRLG 123 (271)
Q Consensus 53 g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~g 123 (271)
|+++ +|.++|++..+.-.|.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhc
Confidence 7876 89999999986323557899999999999999999999999999986 443 3 57889999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINI-YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 202 (271)
+.++|.++|++..+.. +.+...|...+.. +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|
T Consensus 371 ~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 9999999999998862 2233333332222 346899999999999987752 235788999999999999999999999
Q ss_pred HHHHHCC-CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275 203 EEMIDAG-CYPD--GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 203 ~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
++....+ ..|+ ...|...+......|+.+.+..+.+++.+..+
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9998863 2332 45788888888889999999999999876554
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=1.4e-10 Score=91.27 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=139.2
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CC
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRL------G-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS------GL-KP 107 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~~ 107 (271)
|..+...| .|++++|++.|++..+. + .+....++..+...+...|++++|...+++..+. .. +.
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 125 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 66666666 99999999999998764 2 2335678899999999999999999999988764 11 22
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC-------
Q 036275 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG------SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK------- 173 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------- 173 (271)
...++..+...+...|++++|..++++..+. +-.| ...++..+...|...|++++|.+.+++....
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3567888999999999999999999988764 1122 3578889999999999999999999987753
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 174 RLKPDV-VTWTSRLAAYSRKKLYR------RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 174 g~~~~~-~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
...+.. ..|..+...+...+... .+...++.... ..+....++..+...+...|++++|..++++..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112222 23333333333322222 22222221111 11223457788889999999999999999987653
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.23 E-value=9.1e-10 Score=83.46 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=105.8
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHML----------------LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 115 (271)
.|++++|+..|++..+.+ |-+...|.. +..++.+.|++++|+..|++..+... -+...+..+
T Consensus 17 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 94 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEAC 94 (208)
T ss_dssp TTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 889999999998887764 335556666 77777788888888888877777642 256677777
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC--HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF--IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
..++...|++++|+..|++..+.. |.+..++..+..+|...|+ .+.+...+..... ..|....+.....++...|
T Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~ 171 (208)
T 3urz_A 95 AEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTT 171 (208)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHcc
Confidence 777888888888888888777753 4456777777777665543 3344555555432 1222223444455566677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275 194 LYRRCLEIFEEMIDAGCYPDGGTAKVL 220 (271)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~p~~~~~~~l 220 (271)
++++|...|++.++. .|+......+
T Consensus 172 ~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 172 RYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp THHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 788888888777664 5665444333
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.23 E-value=1e-09 Score=85.97 Aligned_cols=172 Identities=10% Similarity=0.048 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHhHHHHHHHHHHhCC--CCCChhhH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD---TFVINSMLNLYGRLGQFEKMEEVLTAMEKGS--YAADISTY 147 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~ 147 (271)
+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+...+.. -+.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3444444555555555555555555555544211 1 3344445555555555555555555554431 00112334
Q ss_pred HHHHHHHHc--------CCCHHHHHHHHHhchhCCCCCC-HHH-----------------HHHHHHHHHhcCCHHHHHHH
Q 036275 148 NILINIYGR--------GGFIEKMEGLFQSLPAKRLKPD-VVT-----------------WTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 148 ~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~-~~~-----------------~~~li~~~~~~g~~~~a~~~ 201 (271)
..+..++.. .|++++|...|+++.... |+ ... +..+...|...|++++|...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 444445544 555555555555544431 11 111 24456667777777777777
Q ss_pred HHHHHHCCCC-C-CHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHhcccch
Q 036275 202 FEEMIDAGCY-P-DGGTAKVLISACSSE----------DQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 202 ~~~m~~~~~~-p-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~ 247 (271)
|++.++..-. + ....+..+..++... |++++|...++++.+..+..
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 7777654211 1 234555666666544 77777777777777655443
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.23 E-value=6.7e-10 Score=87.07 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=129.5
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KP-DTFVINSMLN 117 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~-~~~~~~~li~ 117 (271)
|+.-...+ .|++++|++.|+++.+.. |.+ ...+..+..++.+.|++++|+..|++..+... .| ....+..+..
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 55555555 999999999999998874 334 77888999999999999999999999988632 22 2456777888
Q ss_pred HHHc--------cCCHhHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHcCCCHHHHHHHHHhchh
Q 036275 118 LYGR--------LGQFEKMEEVLTAMEKGSYAADISTY-----------------NILINIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 118 ~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~ 172 (271)
++.. .|++++|+..|++..+.. +.+.... ..+...|.+.|++++|...|+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888 999999999999998762 3333444 4568889999999999999999887
Q ss_pred CCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 036275 173 KRLK-P-DVVTWTSRLAAYSRK----------KLYRRCLEIFEEMIDA 208 (271)
Q Consensus 173 ~g~~-~-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 208 (271)
.... + ....+..+..+|... |++++|...+++..+.
T Consensus 177 ~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 177 AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5211 1 245778888888866 8999999999998875
No 86
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=3.4e-10 Score=93.82 Aligned_cols=189 Identities=7% Similarity=-0.101 Sum_probs=141.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC--CC----CCChhhHH
Q 036275 80 LLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG--SY----AADISTYN 148 (271)
Q Consensus 80 li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~----~~~~~~~~ 148 (271)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999998764 2111 2357888999999999999999999987653 11 11246788
Q ss_pred HHHHHHHcCCCHHHHHHHHHhchhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 036275 149 ILINIYGRGGFIEKMEGLFQSLPAKRL-KPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA----GC-YPDGGTAK 218 (271)
Q Consensus 149 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~ 218 (271)
.+...|...|++++|.+.|++...... .++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999998764210 112 247888999999999999999999988761 32 33466788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcc----cch----hHHHHHHHhhccc---cccchhhh
Q 036275 219 VLISACSSEDQIEQVTTLVRTMHKDM----KTA----LPIYFNLYGEKGV---ARSNLGQY 268 (271)
Q Consensus 219 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~----~~~~~~~~~~~G~---~~~a~~~~ 268 (271)
.+...+...|++++|...+++..+.. .+. ...+-.+|...|+ .++|+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~ 329 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 89999999999999999999876532 111 2335566777887 55555543
No 87
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=3.2e-08 Score=84.01 Aligned_cols=204 Identities=6% Similarity=-0.054 Sum_probs=149.5
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-C-C
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRL--------GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-----G-L-K 106 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~-~ 106 (271)
||.+-..+ .|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+. + . .
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 88887777 99999999999987542 12345778999999999999999999999887642 1 1 1
Q ss_pred CCHHHHHHHHHHHHc--cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH---HHcCCCHHHHHHHHHhchhCCCCCCHHH
Q 036275 107 PDTFVINSMLNLYGR--LGQFEKMEEVLTAMEKGSYAADISTYNILINI---YGRGGFIEKMEGLFQSLPAKRLKPDVVT 181 (271)
Q Consensus 107 ~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 181 (271)
....++..+..++.. .+++++|++.|++..+.. |.++..+..+..+ +...++.++|++.+++..+.. +.+..+
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~ 211 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL 211 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH
Confidence 234566666555544 457999999999998863 3445666655555 445678889999999877653 234566
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH
Q 036275 182 WTSRLAAYSR----KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI 250 (271)
Q Consensus 182 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 250 (271)
+..+...+.. .|+.++|.+.+++..... +.+..++..+...+...|++++|...+++..+..+.....
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 6666555544 467789999999988754 5567888899999999999999999999998876655443
No 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=1.1e-09 Score=95.67 Aligned_cols=154 Identities=8% Similarity=-0.033 Sum_probs=118.8
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|.+.|++..+.. +.+...|..+...+.+.|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988765 5578899999999999999999999999999875 33678899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK---KLYRRCLEIFEEMIDA 208 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 208 (271)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +-+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998863 4567899999999999999999999999988763 23577889999999999 9999999999998875
Q ss_pred C
Q 036275 209 G 209 (271)
Q Consensus 209 ~ 209 (271)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=5.7e-09 Score=86.00 Aligned_cols=192 Identities=9% Similarity=0.064 Sum_probs=81.4
Q ss_pred hcCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGI-TPT----MKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLK--PD-TFVINSMLNLY 119 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~~-~~~~~~li~~~ 119 (271)
.|++++|.+.+++..+..- ..+ ..++..+...+...|++++|...+++..+. +.. |. ...+..+...+
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 66 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence 5555555555555433210 011 112334444455555555555555544332 111 11 22334444555
Q ss_pred HccCCHhHHHHHHHHHHhCCCC--C--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHH-----HHHHHH
Q 036275 120 GRLGQFEKMEEVLTAMEKGSYA--A--DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWT-----SRLAAY 189 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~~~~~~--~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~-----~li~~~ 189 (271)
...|++++|...+++.....-. + ...++..+...+...|++++|...+++.......++ ...+. ..+..+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 5555555555555554432110 0 123344455555555555555555555432210111 01111 112224
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 190 SRKKLYRRCLEIFEEMIDAGCYP---DGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
...|++++|...+++.......+ ....+..+...+...|++++|...+++....
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45555555555555544321110 1123344444555555555555555555443
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=3.9e-09 Score=86.96 Aligned_cols=216 Identities=6% Similarity=-0.124 Sum_probs=108.6
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcc
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTM----KSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPD----TFVINSMLNLYGRL 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~ 122 (271)
.|++++|...+++.....-..+. ..++.+...+...|++++|...+++...... ..+ ..++..+...+...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 66666666666665554322222 2566666666666666666666665543210 011 12244555566666
Q ss_pred CCHhHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC----CCHHHHHHHHHHHHh
Q 036275 123 GQFEKMEEVLTAMEKG----SYA--A-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK----PDVVTWTSRLAAYSR 191 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~ 191 (271)
|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++....... ....++..+...+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 186 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 6666666666655432 111 2 1234455566666666666666666655432111 112345556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCcHHHHHHHHHHHHhcccch-------hHHHHHHHhhc
Q 036275 192 KKLYRRCLEIFEEMIDAGCYPD--GGTAK----VLISACSSEDQIEQVTTLVRTMHKDMKTA-------LPIYFNLYGEK 258 (271)
Q Consensus 192 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~ 258 (271)
.|++++|...+++.....-.++ ..... ..+..+...|++++|..++++..+..... ...+..++...
T Consensus 187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 266 (373)
T 1hz4_A 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence 6666666666666543210111 11111 12223456666666666666654432211 12334455666
Q ss_pred cccccchhh
Q 036275 259 GVARSNLGQ 267 (271)
Q Consensus 259 G~~~~a~~~ 267 (271)
|+.++|++.
T Consensus 267 g~~~~A~~~ 275 (373)
T 1hz4_A 267 GEFEPAEIV 275 (373)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 666665544
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=5.7e-09 Score=79.99 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=106.6
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH-HHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGIT-P-TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-PDT-FVINSMLNL 118 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~~li~~ 118 (271)
|+.....+ .|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.+.... +.. ..+..+..+
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 33334444 78888888888887765311 1 1356667777788888888888888777765322 111 133334444
Q ss_pred HHc------------------cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275 119 YGR------------------LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV 180 (271)
Q Consensus 119 ~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 180 (271)
+.. .|+.++|...|+++.+.. |-+...+......- .+...+ ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~--------~~ 148 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL--------AK 148 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH--------HH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH--------HH
Confidence 433 345555655555555541 22222222111000 000000 00
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD----GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
....+...+.+.|++++|...|+++.+. .|+ ...+..+..++.+.|+.++|.+.++.+...++.
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 1134556778889999999999998875 233 246777888899999999999999988776654
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=2.5e-09 Score=80.96 Aligned_cols=169 Identities=5% Similarity=-0.034 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH----------------HHHHHHccCCHhHHHHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINS----------------MLNLYGRLGQFEKMEEVLTAM 135 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m 135 (271)
++..+......+...|++++|+..|++..+. .| +...+.. +..++.+.|++++|+..|++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555666788999999999999999886 34 3445666 889999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 036275 136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL--YRRCLEIFEEMIDAGCYPD 213 (271)
Q Consensus 136 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 213 (271)
.+.. |.+...+..+..++...|++++|...|++..+.. +-+..++..+...|...|+ .+.+...++.... ..|.
T Consensus 81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (208)
T 3urz_A 81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKM 156 (208)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCch
Confidence 8874 5578899999999999999999999999998863 2357788888888876654 3445555555432 1222
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275 214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
...+.....++...|++++|...|++..+..+..
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 3333444555667899999999999998877653
No 93
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=2.6e-09 Score=93.28 Aligned_cols=158 Identities=8% Similarity=-0.120 Sum_probs=121.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 036275 87 TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL 166 (271)
Q Consensus 87 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 166 (271)
.|++++|++.+++..+.. +-+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 2357889999999999999999999999999873 45688999999999999999999999
Q ss_pred HHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhc
Q 036275 167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQVTTLVRTMHKD 243 (271)
Q Consensus 167 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 243 (271)
+++..+.. +-+...+..+...+...|++++|.+.+++..+.. +-+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988763 2357889999999999999999999999988864 44678888999999999 9999999999999877
Q ss_pred ccchh
Q 036275 244 MKTAL 248 (271)
Q Consensus 244 ~~~~~ 248 (271)
++...
T Consensus 158 ~p~~~ 162 (568)
T 2vsy_A 158 GVGAV 162 (568)
T ss_dssp TCCCS
T ss_pred CCccc
Confidence 66543
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=5.3e-09 Score=83.32 Aligned_cols=159 Identities=10% Similarity=0.005 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 036275 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR 185 (271)
Q Consensus 106 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 185 (271)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3445566777778888888889988888887763 446778888888888889999999888888765 3554433222
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch-----hHHHHHHHhhcc
Q 036275 186 -LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA-----LPIYFNLYGEKG 259 (271)
Q Consensus 186 -i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~G 259 (271)
...+...++.++|...+++..+.. +.+...+..+...+...|++++|...+.++.+..+.. ...+..+|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 233566777778888888877753 4467778888888888889999988888887755433 455677788888
Q ss_pred ccccchhhh
Q 036275 260 VARSNLGQY 268 (271)
Q Consensus 260 ~~~~a~~~~ 268 (271)
+.++|+..|
T Consensus 270 ~~~~a~~~~ 278 (287)
T 3qou_A 270 TGDALASXY 278 (287)
T ss_dssp TTCHHHHHH
T ss_pred CCCcHHHHH
Confidence 888887765
No 95
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.09 E-value=3.2e-08 Score=92.15 Aligned_cols=165 Identities=12% Similarity=0.059 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153 (271)
Q Consensus 74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 153 (271)
+.+|..+..++...|++++|+..|.+. -|...|..++.++.+.|++++|.+++....+.. ++....+.++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence 455556666666666666666665432 244455556666666666666666665554432 222222335556
Q ss_pred HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036275 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV 233 (271)
Q Consensus 154 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 233 (271)
|++.+++++...+.. .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|
T Consensus 1177 YAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 666665554333321 234445555556666666666666666552 2566666666666666666
Q ss_pred HHHHHHHHhcccchhHHHHHHHhhccccccc
Q 036275 234 TTLVRTMHKDMKTALPIYFNLYGEKGVARSN 264 (271)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a 264 (271)
.+.+++. .+...|...-.++...|.++.|
T Consensus 1241 IEaarKA--~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1241 VDGARKA--NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHh--CCHHHHHHHHHHHhhhhHHHHH
Confidence 6666655 2223333333334444443333
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=1.7e-09 Score=79.59 Aligned_cols=151 Identities=9% Similarity=-0.032 Sum_probs=86.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHhHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL-YGRLGQFEKMEE 130 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~ 130 (271)
.|++++|...|++..+.. |.+...+..+...+.+.|++++|+..+++..+.. |+...+..+... +...+...+|..
T Consensus 19 ~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp TTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHH
Confidence 677777777777665543 4456666777777777777777777776665542 233332222111 112222234566
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
.+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++..
T Consensus 96 ~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 96 RLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 666665542 3345666666666777777777777776666553221 23456666666666666666666666543
No 97
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=6.1e-09 Score=86.16 Aligned_cols=196 Identities=13% Similarity=-0.013 Sum_probs=146.6
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcC--CC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLG--IT----PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTF 110 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~--~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~ 110 (271)
|..+-..| .|+++.|...+.+..+.. .. ....+++.+...|...|++++|.+.+++..+. +..+ ...
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55566666 999999999999886531 11 13567888999999999999999999887653 2111 234
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHh-----CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC----CCCCHHH
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEK-----GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR----LKPDVVT 181 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~ 181 (271)
++..+...|...|++++|.+.+++..+ . .+....++..+...+.+.|++++|...+++..... -+.....
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV-PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 688899999999999999999998876 3 23347788899999999999999999999876531 1222345
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 182 WTSRLAAYSRKKL---YRRCLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 182 ~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
+..+...+...++ ..+|...+++ .+..|+ ...+..+...+...|++++|...+++..+.
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5666666777788 6667666665 332333 345667888899999999999999988653
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=2.4e-08 Score=76.42 Aligned_cols=143 Identities=8% Similarity=0.078 Sum_probs=93.0
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHh------------------cCChHHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTM---KSHMLLLTAYSK------------------TGNVAKCEGVINQM 100 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~------------------~~~~~~a~~~~~~m 100 (271)
+..+..+| .|++++|++.|+++.+.. |-+. ..+..+..++.+ .|+.++|+..|+++
T Consensus 44 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 122 (225)
T 2yhc_A 44 QLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL 122 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence 33344555 999999999999998874 2222 245555555554 57899999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-
Q 036275 101 HKSGLKPDT-FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD- 178 (271)
Q Consensus 101 ~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~- 178 (271)
.+.. |+. ..+...... ..+...+. .....+...|.+.|++++|...|+++.+. .|+
T Consensus 123 l~~~--P~~~~a~~a~~~l----------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~ 180 (225)
T 2yhc_A 123 VRGY--PNSQYTTDATKRL----------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDT 180 (225)
T ss_dssp HTTC--TTCTTHHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTS
T ss_pred HHHC--cCChhHHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCC
Confidence 9873 332 222221110 00111110 11234567788888888888888887765 233
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275 179 ---VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG 209 (271)
Q Consensus 179 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 209 (271)
...+..+..++.+.|+.++|.+.++.+...+
T Consensus 181 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 181 QATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 2467778888888888888888888877763
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=5.2e-09 Score=83.40 Aligned_cols=167 Identities=10% Similarity=-0.043 Sum_probs=131.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhH-HH
Q 036275 71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY-NI 149 (271)
Q Consensus 71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ 149 (271)
+.+...+..+...+.+.|++++|...|++..+... -+...+..+...+...|++++|...++++... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 55667788888889999999999999999888742 36677888999999999999999999988765 3454333 23
Q ss_pred HHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccC
Q 036275 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSED 228 (271)
Q Consensus 150 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g 228 (271)
....+...++.++|.+.+++..... +.+...+..+...+...|++++|...+.+..+..-. .+...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334667788888999998887763 335788899999999999999999999998875311 12667888999999999
Q ss_pred cHHHHHHHHHHHH
Q 036275 229 QIEQVTTLVRTMH 241 (271)
Q Consensus 229 ~~~~a~~~~~~~~ 241 (271)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999888887654
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=1.5e-09 Score=77.81 Aligned_cols=118 Identities=7% Similarity=-0.060 Sum_probs=59.7
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|++.+....... +-+...+..+...|.+.|++++|++.|++..+... -+...|..+..++.+.|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHH
Confidence 455555555555543321 12233444455555555666666655555555431 2445555555555555555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH-HHhchh
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL-FQSLPA 172 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~ 172 (271)
|++..+.. +.+..++..+...|.+.|++++|.+. +++..+
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555542 23345555555555555555444333 344443
No 101
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.03 E-value=5.2e-09 Score=88.88 Aligned_cols=213 Identities=11% Similarity=-0.028 Sum_probs=129.1
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK 127 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 127 (271)
.++.++|++.+++..+.+ +.+..++..+...+.. .++.++|.+.+++..... +.+...+..+...|...|++++
T Consensus 188 ~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp SCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHH
Confidence 677777888887777765 4566666666555544 356677888887776654 3356667777888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcC-------------------CCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275 128 MEEVLTAMEKGSYAADISTYNILINIYGRG-------------------GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188 (271)
Q Consensus 128 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 188 (271)
|.+.+++..+.. |.+..++..+...|... +..++|...+++..... +.+..++..+...
T Consensus 266 A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 266 AIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence 888888777652 34456666665555322 23566777777766542 2234567777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHhc----------------------
Q 036275 189 YSRKKLYRRCLEIFEEMIDAGCYPDGG--TAKVLIS-ACSSEDQIEQVTTLVRTMHKD---------------------- 243 (271)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~---------------------- 243 (271)
+...|++++|...|++..+....+... .+..+.. .....|+.++|...+++..+-
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l 423 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRL 423 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777654222221 1222222 234567777777777665432
Q ss_pred --c---cchhHHHHHHHhhccccccchhhh
Q 036275 244 --M---KTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 244 --~---~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+ ...+..+-.+|...|+.++|++.|
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 223445666789999999998876
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=2.3e-08 Score=79.62 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=112.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275 93 CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY-AADISTYNILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 93 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
|+..+++..+.+ .++..++..+..++...|+.++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555555544 45666667888999999999999999999877652 1367888899999999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 172 AKRLKP-----DVVTWTSRLAAY--SRKK--LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 172 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
+. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76 55 356677777663 3334 899999999998765 46644444555588999999999999998765
Q ss_pred c
Q 036275 243 D 243 (271)
Q Consensus 243 ~ 243 (271)
.
T Consensus 240 ~ 240 (310)
T 3mv2_B 240 D 240 (310)
T ss_dssp H
T ss_pred h
Confidence 4
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=3.4e-09 Score=94.52 Aligned_cols=171 Identities=7% Similarity=-0.116 Sum_probs=140.3
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275 85 SKTGNVAKCEGVINQMH--------KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156 (271)
Q Consensus 85 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 156 (271)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|++.+++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 432 3356778889999999999999999999998863 5578899999999999
Q ss_pred CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036275 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236 (271)
Q Consensus 157 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 236 (271)
.|++++|.+.|++..+.. +-+...|..+..++.+.|++++ ...|++..+.+ +-+...+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988763 2256789999999999999999 99999988864 44678899999999999999999999
Q ss_pred HHHHHhcccchhHHH---HHHHhhccc
Q 036275 237 VRTMHKDMKTALPIY---FNLYGEKGV 260 (271)
Q Consensus 237 ~~~~~~~~~~~~~~~---~~~~~~~G~ 260 (271)
+++..+.++...... ..+|...|.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999988776654444 334555444
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=1.1e-09 Score=78.44 Aligned_cols=144 Identities=8% Similarity=-0.029 Sum_probs=96.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275 81 LTAYSKTGNVAKCEGVINQMHKSGLKPD-TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 159 (271)
...+...|++++|+..+++.... .|+ ...+-.+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 34445567778888877776654 232 2345567778888888888888888887763 4467788888888888888
Q ss_pred HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036275 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI-FEEMIDAGCYPDGGTAKVLISACSSEDQ 229 (271)
Q Consensus 160 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 229 (271)
+++|...|++..+.. +-+..+|..+...|.+.|++++|.+. +++..+.. +-+..+|....+.+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888877652 12466778888888888887765554 46666542 3345566655555555553
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=1.5e-08 Score=81.44 Aligned_cols=162 Identities=8% Similarity=-0.014 Sum_probs=80.5
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLG----IT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPD--TFV 111 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~--~~~ 111 (271)
|+.....| .|++++|.+.|.+..+.. -+ .-..+|+.+...|...|++++|+..|++..+.. -.+. ..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444 566666666666554321 00 013355555566666666666666665544320 0111 234
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCCC-HHH
Q 036275 112 INSMLNLYGRLGQFEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK----RLKPD-VVT 181 (271)
Q Consensus 112 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~ 181 (271)
+..+...|.. |++++|++.+++..+. +... ...++..+...|.+.|++++|...|++.... +..++ ..+
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 5555555555 6666666666655432 1000 1345555666666666666666666655431 11111 124
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
+..+...+...|++++|...|++..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4444455555566666666666655
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=1.2e-08 Score=75.05 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-H
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI-Y 154 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~ 154 (271)
.+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|+..++...+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34455666677777777777777665542 2245566677777777777777777777665542 233333222211 1
Q ss_pred HcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHH
Q 036275 155 GRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP-DGGTAKVLISACSSEDQIEQ 232 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 232 (271)
...+...+|...+++..+. .| +...+..+...+...|++++|...|++..+..-.+ +...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1222233456666666554 23 45667777777777777777777777766653221 24466666677777777777
Q ss_pred HHHHHHHHH
Q 036275 233 VTTLVRTMH 241 (271)
Q Consensus 233 a~~~~~~~~ 241 (271)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=9.3e-08 Score=72.11 Aligned_cols=124 Identities=9% Similarity=0.001 Sum_probs=58.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159 (271)
Q Consensus 80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 159 (271)
+...+...|++++|...|++.. .|+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3344444455555554444432 3344444445555555555555555554444432 2334444445555555555
Q ss_pred HHHHHHHHHhchhCCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 160 IEKMEGLFQSLPAKRL--------------KP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 160 ~~~a~~~~~~m~~~g~--------------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
+++|.+.|++..+... .| ....+..+..++...|++++|...+++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555554443210 01 1144555555555555555555555555543
No 108
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=1.3e-07 Score=75.38 Aligned_cols=163 Identities=12% Similarity=0.050 Sum_probs=122.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC-CC----hhhHHH
Q 036275 80 LLTAYSKTGNVAKCEGVINQMHKSGL-KPDT----FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA-AD----ISTYNI 149 (271)
Q Consensus 80 li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~ 149 (271)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778889999999999999887532 2332 23445777778888999999999999874222 22 236899
Q ss_pred HHHHHHcCCCHHHHHHHHHhchh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHH
Q 036275 150 LINIYGRGGFIEKMEGLFQSLPA----K-RLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMID----AGCYPD-GGTAK 218 (271)
Q Consensus 150 li~~~~~~g~~~~a~~~~~~m~~----~-g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~ 218 (271)
+..+|...|++++|...|+++.+ . +..+. ..+|..+...|...|++++|...+++..+ .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998773 1 11222 24788899999999999999999988664 332333 56888
Q ss_pred HHHHHHhccC-cHHHHHHHHHHHHh
Q 036275 219 VLISACSSED-QIEQVTTLVRTMHK 242 (271)
Q Consensus 219 ~l~~~~~~~g-~~~~a~~~~~~~~~ 242 (271)
.+..++...| +.++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888999999 46999999988754
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=9.7e-08 Score=71.99 Aligned_cols=124 Identities=12% Similarity=0.057 Sum_probs=105.6
Q ss_pred hHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 45 NLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 45 ~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
+.-...+ .|++++|.+.|++. +.|+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3333334 99999999999876 36788999999999999999999999999998875 346788999999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCC----------------hhhHHHHHHHHHcCCCHHHHHHHHHhchhCC
Q 036275 124 QFEKMEEVLTAMEKGSYAAD----------------ISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 174 (271)
++++|.+.|++..+.. +.+ ...+..+..+|.+.|++++|.+.|++..+..
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999998852 222 2788899999999999999999999988763
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=3.5e-07 Score=69.30 Aligned_cols=157 Identities=11% Similarity=0.019 Sum_probs=129.2
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG----NVAKCEGVINQMHKSGLKPDTFVINSMLN 117 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 117 (271)
+..+-..| .+++++|.+.|++..+.| ++..+..|...|.. + +.++|+.+|++..+.| +...+..|..
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 44455555 999999999999998876 67788888888887 6 8999999999998875 6677888888
Q ss_pred HHHc----cCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275 118 LYGR----LGQFEKMEEVLTAMEKGSYA-ADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188 (271)
Q Consensus 118 ~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 188 (271)
.|.. .+++++|.+.|++..+.|.. .++..+..|...|.. .+++++|...|++..+. ..+...+..|...
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMM 171 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 8887 88999999999999987621 127888899999988 88999999999999876 2355577778777
Q ss_pred HHhc-C-----CHHHHHHHHHHHHHCC
Q 036275 189 YSRK-K-----LYRRCLEIFEEMIDAG 209 (271)
Q Consensus 189 ~~~~-g-----~~~~a~~~~~~m~~~~ 209 (271)
|... | +.++|...|+...+.|
T Consensus 172 y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 172 FQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7653 3 8999999999988877
No 111
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.91 E-value=1.8e-06 Score=73.15 Aligned_cols=194 Identities=13% Similarity=0.087 Sum_probs=128.6
Q ss_pred chHHHHHH--hc---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036275 44 PNLFVFIF--SI---YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT----GNVAKCEGVINQMHKSGLKPDTFVINS 114 (271)
Q Consensus 44 y~~ll~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ 114 (271)
+..+-..| .| ++++|++.|++..+.| +++...+..+...|... ++.++|+.+|++.. .| +...+..
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 44444455 66 7888888888887776 55666656666666554 67888888887776 32 4445555
Q ss_pred HHHH-H--HccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC-----CHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275 115 MLNL-Y--GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-----FIEKMEGLFQSLPAKRLKPDVVTWTSRL 186 (271)
Q Consensus 115 li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li 186 (271)
+... + ...++.++|.+.|++..+.| +...+..|...|. .| ++++|.+.|++.. .| +...+..|.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg 325 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLG 325 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHH
Confidence 5555 3 45778888888888887766 5666667777776 44 7888888888777 33 566777777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccchhHHHHH
Q 036275 187 AAYSR----KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTALPIYFN 253 (271)
Q Consensus 187 ~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 253 (271)
..|.. ..++++|...|++..+.|. |+ ....|...|.. ..+.++|..+++...+.+.......+.
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~ 397 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLAT 397 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66665 3478888888888777662 33 33344444442 457888888888877766554443333
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=4.2e-08 Score=78.81 Aligned_cols=177 Identities=7% Similarity=0.000 Sum_probs=133.1
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHh
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTFVINSMLNLYGRLGQFE 126 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~ 126 (271)
.++++.|...|.+. ...|...|++++|...|.+..+. +-.+ -..+|+.+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 57888888888765 45677889999999999887653 2111 1357888999999999999
Q ss_pred HHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 036275 127 KMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK----RLKP-DVVTWTSRLAAYSRKKLYR 196 (271)
Q Consensus 127 ~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~ 196 (271)
+|+..+++..+. |-+. ...++..+...|.. |++++|++.|++.... |-.+ ...++..+...+...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 999999886543 2111 24678889999988 9999999999987643 1111 1457889999999999999
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275 197 RCLEIFEEMIDA----GCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 197 ~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
+|...|++..+. +..++ ...+..+..++...|++++|...+++.. ..+
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 999999987752 22222 2356667777888899999999999987 443
No 113
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.89 E-value=1.4e-07 Score=67.85 Aligned_cols=95 Identities=9% Similarity=-0.070 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 155 (271)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444455555555555555555554432 1234445555555555555555555555554432 233444555555555
Q ss_pred cCCCHHHHHHHHHhchh
Q 036275 156 RGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 156 ~~g~~~~a~~~~~~m~~ 172 (271)
..|++++|.+.|++...
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55555555555555444
No 114
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.89 E-value=2.2e-08 Score=73.47 Aligned_cols=119 Identities=9% Similarity=0.014 Sum_probs=86.3
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH--hHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL-YGRLGQF--EKM 128 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~a 128 (271)
.|++++|...+++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 677788888888777665 5577788888888888888888888888877654 2256666677777 6677887 888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
...+++..+.. +.+...+..+...|...|++++|...|+++...
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888877753 345677777788888888888888888877765
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.88 E-value=1.5e-07 Score=67.75 Aligned_cols=131 Identities=11% Similarity=0.024 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 188 (271)
...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.+++..... +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3457778888999999999999999988763 4578889999999999999999999999988763 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHHHh
Q 036275 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV--LISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
+...|++++|...+++..+.. +.+...+.. ....+...|++++|...+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999988753 334555533 33447788999999999887643
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=5.4e-07 Score=71.72 Aligned_cols=199 Identities=8% Similarity=-0.046 Sum_probs=133.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV---INSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
.+..+..-...|+..+...+...+.-.- +.+.......+... +...+..+...|++++|..++++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 4445544345677777766666553221 11222222223333 33347788899999999999999887
Q ss_pred CCC-CCCh----hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 138 GSY-AADI----STYNILINIYGRGGFIEKMEGLFQSLPAKRLK-PD----VVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 138 ~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
... .|+. ..+..+...+...|++++|.+.|++....... ++ ..+++.+...|...|++++|...+++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 521 2221 23445777788889999999999998763222 22 23689999999999999999999999874
Q ss_pred ----C-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc---------chhHHHHHHHhhccc-cccchhhh
Q 036275 208 ----A-GCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK---------TALPIYFNLYGEKGV-ARSNLGQY 268 (271)
Q Consensus 208 ----~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~~~~~G~-~~~a~~~~ 268 (271)
. +..+. ..++..+...|...|++++|...+++..+... .....+-.+|.+.|+ .++|++.|
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 1 21222 24778889999999999999999998764321 123335566888995 48888765
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=3.1e-07 Score=72.15 Aligned_cols=191 Identities=11% Similarity=0.027 Sum_probs=145.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHH------------CCCC----C-
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLL-------LTAYSKTGNVAKCEGVINQMHK------------SGLK----P- 107 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~------------~~~~----~- 107 (271)
.++...|.+.|.++.+.+ |-....|..+ ...+...++..+++..+.+-.+ .|.- +
T Consensus 19 ~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 899999999999999986 6678889888 5666666666666666655544 2210 0
Q ss_pred --C-HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC--HHHH
Q 036275 108 --D-TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD--VVTW 182 (271)
Q Consensus 108 --~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~ 182 (271)
+ ....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 0 2334456778889999999999999988754 544366677789999999999999999766542 111 2468
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD--GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT 246 (271)
Q Consensus 183 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 246 (271)
..+-.++...|++++|...|++.......|. .........++.+.|+.++|..+|+++....+.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 8888999999999999999999885543254 335566677788999999999999999987776
No 118
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.86 E-value=9.8e-07 Score=74.83 Aligned_cols=178 Identities=12% Similarity=0.065 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CCHh
Q 036275 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG---NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL----GQFE 126 (271)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~ 126 (271)
..+.+..++..... .++..+..+...|...| +.++|+..|++..+.| .++...+..+...|... ++.+
T Consensus 160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 34444444443322 23347888888898999 8999999999999987 44666666777777655 7899
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHH-H--HcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 036275 127 KMEEVLTAMEKGSYAADISTYNILINI-Y--GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK-----LYRRC 198 (271)
Q Consensus 127 ~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~a 198 (271)
+|.+.|+... .| +...+..|... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999987 43 56667777776 4 56899999999999988876 6778888888877 55 99999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccchh
Q 036275 199 LEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 199 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
.+.|++.. .| +...+..+...|.. ..+.++|..+|++..+.+.+..
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 99998877 43 56666777766665 4499999999999887765443
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=9.4e-07 Score=70.71 Aligned_cols=209 Identities=11% Similarity=0.009 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hcc---CCH
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG--NVAKCEGVINQMHKSGLKPDTFVINSMLNLY----GRL---GQF 125 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~ 125 (271)
.++|++.++.+...+ |-....|+.--..+...+ +++++++.++.+.....+ +..+|+.--..+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 356666666666655 445556666666666666 666666666666655322 333333322222 233 556
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH--HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 036275 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE--KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL------YRR 197 (271)
Q Consensus 126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~ 197 (271)
++++++++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-.......+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 66666666666542 445566666666666666665 66666666665432 245555555555555554 566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH-HHHHHHHHHHhcc---cch---hHHHHHHHhhccccccchhhh
Q 036275 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE-QVTTLVRTMHKDM---KTA---LPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~---~~~---~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+++.++.+.... +-|...|...-..+.+.|... .+..+..++.+.+ +.. ...+.++|.+.|+.++|++.|
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 666666655543 335555555555555544422 2334444443322 111 233445566666666665544
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=5.2e-07 Score=71.81 Aligned_cols=167 Identities=13% Similarity=0.019 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHhHHHHHHHHHHhCCC---CCC--h
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-----FVINSMLNLYGRLGQFEKMEEVLTAMEKGSY---AAD--I 144 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~ 144 (271)
..+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34556677788899999999999888775432111 2244566677888999999999998875321 122 4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPA---K-RLKP--DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA----GCYPD- 213 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~- 213 (271)
.+++.+...|...|++++|...|++... . +-.+ ...++..+...|...|++++|...+++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5788899999999999999999998762 2 1111 1257888899999999999999999887642 21111
Q ss_pred HHHHHHHHHHHhccCcHHHH-HHHHHHHH
Q 036275 214 GGTAKVLISACSSEDQIEQV-TTLVRTMH 241 (271)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 241 (271)
..+|..+..++...|+.++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788888899999999999 77777754
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=1.7e-07 Score=63.73 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 154 (271)
..|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444444444444444444444332 1233344444444444444444444444444331 22333444444444
Q ss_pred HcCCCHHHHHHHHHhch
Q 036275 155 GRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~ 171 (271)
...|++++|...++++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 44444444444444433
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=2.5e-07 Score=62.92 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 188 (271)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567777777888888888888888777653 4456777778888888888888888888776653 2356677777888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036275 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225 (271)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 225 (271)
+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 888888888888888777643 334455555544443
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.81 E-value=1.4e-07 Score=65.37 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275 77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156 (271)
Q Consensus 77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 156 (271)
+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.+++..+.. +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444332 1133344444444444444444444444444331 2233444444444444
Q ss_pred CCCHHHHHHHHHhchh
Q 036275 157 GGFIEKMEGLFQSLPA 172 (271)
Q Consensus 157 ~g~~~~a~~~~~~m~~ 172 (271)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444433
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=5.5e-08 Score=72.62 Aligned_cols=154 Identities=5% Similarity=-0.008 Sum_probs=81.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHh
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTFVINSMLNLYGRLGQFE 126 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~ 126 (271)
.|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +..+ ....+..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 5677777775444432 21234566666777777777777777777666541 1111 2234566666666777777
Q ss_pred HHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC-CCC----HHHHHHHHHHHHhcCCH
Q 036275 127 KMEEVLTAMEKG----SYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-KPD----VVTWTSRLAAYSRKKLY 195 (271)
Q Consensus 127 ~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~ 195 (271)
+|.+.+++..+. +-.+ ....+..+...+...|++++|.+.+++...... ..+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 776666655432 1011 123455566666666666666666665442100 001 12344555555566666
Q ss_pred HHHHHHHHHHH
Q 036275 196 RRCLEIFEEMI 206 (271)
Q Consensus 196 ~~a~~~~~~m~ 206 (271)
++|...+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665555543
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=1.7e-07 Score=64.65 Aligned_cols=98 Identities=10% Similarity=-0.042 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44555555666666666666666666655543 1244555555555666666666666666555542 234455555555
Q ss_pred HHHcCCCHHHHHHHHHhchh
Q 036275 153 IYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~~ 172 (271)
++.+.|++++|.+.|++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55666666666666555544
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.9e-07 Score=63.65 Aligned_cols=97 Identities=7% Similarity=0.014 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 189 (271)
..+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456677778888888888888888877753 4567788888888888888888888888877653 23466788888888
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 036275 190 SRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~ 208 (271)
...|++++|.+.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 8888888888888887765
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.80 E-value=6.3e-08 Score=72.31 Aligned_cols=157 Identities=8% Similarity=-0.032 Sum_probs=115.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHHcCCC
Q 036275 85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK----GSYAA-DISTYNILINIYGRGGF 159 (271)
Q Consensus 85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~ 159 (271)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+ .+..+ ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678999999966555442 223567788999999999999999999998775 22222 35678889999999999
Q ss_pred HHHHHHHHHhchhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccC
Q 036275 160 IEKMEGLFQSLPAK----RLKP--DVVTWTSRLAAYSRKKLYRRCLEIFEEMID----AGCYP-DGGTAKVLISACSSED 228 (271)
Q Consensus 160 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~g 228 (271)
+++|.+.+++.... +-.| ....+..+...+...|++++|...+++..+ .+..+ -..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999986542 2111 234678888899999999999999988764 22111 1234577788899999
Q ss_pred cHHHHHHHHHHHHh
Q 036275 229 QIEQVTTLVRTMHK 242 (271)
Q Consensus 229 ~~~~a~~~~~~~~~ 242 (271)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=1.1e-07 Score=68.05 Aligned_cols=95 Identities=19% Similarity=0.065 Sum_probs=48.3
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 190 (271)
.+..+...+.+.|++++|+..|+...+.. |.+...|..+..+|...|++++|.+.|++..... +-++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444455555555555555555555442 3344555555555555555555555555554432 112344555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 036275 191 RKKLYRRCLEIFEEMID 207 (271)
Q Consensus 191 ~~g~~~~a~~~~~~m~~ 207 (271)
..|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555554
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=9.9e-07 Score=70.18 Aligned_cols=162 Identities=8% Similarity=-0.019 Sum_probs=120.6
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTM------KSHMLLLTAYSKTGNVAKCEGVINQMHKSGL---KPD--TF 110 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~ 110 (271)
+...+..+ .|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 33344444 99999999999988775422 22 2244566667788999999999999876421 222 45
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHh---C-CCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCCC-H
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEK---G-SYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAK----RLKPD-V 179 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~ 179 (271)
+++.+...|...|++++|...+++..+ . +-.+ ...++..+...|.+.|++++|.+.+++.... +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 789999999999999999999998872 2 1111 1268899999999999999999999987642 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 036275 180 VTWTSRLAAYSRKKLYRRC-LEIFEEMI 206 (271)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a-~~~~~~m~ 206 (271)
.+|..+...|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6889999999999999999 77677654
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.79 E-value=1.4e-07 Score=64.72 Aligned_cols=117 Identities=7% Similarity=-0.072 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI 153 (271)
Q Consensus 74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 153 (271)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3444455555555555555555555554432 1234445555555555555555555555555432 2334455555555
Q ss_pred HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 154 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
+...|++++|.+.|++..... +.+...+..+...+...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555555544431 113344444444444443
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.77 E-value=2.4e-07 Score=63.87 Aligned_cols=116 Identities=12% Similarity=0.070 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44567777777777788888887777777652 3456677777777777777777777777766542 224566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS 226 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 226 (271)
.+...|++++|.+.+++..+.. +-+...+..+..++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 7777777777777777766542 2223444444444433
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.76 E-value=3.7e-07 Score=62.57 Aligned_cols=114 Identities=11% Similarity=-0.119 Sum_probs=95.9
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 44555555 999999999999998875 5578899999999999999999999999998864 3357788899999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 160 (271)
.|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 999999999999998863 44677888888888877764
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=4e-07 Score=74.11 Aligned_cols=131 Identities=10% Similarity=-0.115 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD--------------TFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
+...|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666667777777777777777777666532211 355666666666666666666666666654
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 036275 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC-LEIFEEM 205 (271)
Q Consensus 139 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m 205 (271)
. +.+...+..+..+|...|++++|...|++..+.. +-+...+..+...+...|+.++| ...++.|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3345666666666666666666666666665542 12345566666666666666655 3344444
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.74 E-value=4.8e-08 Score=69.69 Aligned_cols=95 Identities=8% Similarity=-0.046 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 154 (271)
..+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..|++..... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 334444444445555555555555444432 1234444444444555555555555555444432 22344444444455
Q ss_pred HcCCCHHHHHHHHHhch
Q 036275 155 GRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~ 171 (271)
...|++++|.+.|++..
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555554443
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=3.9e-07 Score=65.19 Aligned_cols=103 Identities=12% Similarity=0.012 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
+...+..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..|++..+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 45567777777888888888888888887764 2366777788888888888888888888887763 445677778888
Q ss_pred HHHcCCCHHHHHHHHHhchhCCCCCCH
Q 036275 153 IYGRGGFIEKMEGLFQSLPAKRLKPDV 179 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~ 179 (271)
+|...|++++|.+.|++..+. .|+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 888888888888888887765 3554
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=5.8e-08 Score=77.06 Aligned_cols=186 Identities=8% Similarity=-0.046 Sum_probs=119.5
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
.+...+ .|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +-+...+..+..++...|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344444 999999999999998875 5588889999999999999999999999988874 336678888999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 203 (271)
++++|...|++..+.. +.+...+...+....+......... ........+......+ ..+ ..|+.++|.+.++
T Consensus 87 ~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~ 159 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYL-TRL-IAAERERELEECQ 159 (281)
T ss_dssp CHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHH
Confidence 9999999998877642 1111111111221111111111111 1112223333333333 332 3688899998888
Q ss_pred HHHHCCCCCCHHHHH-HHHHHHhcc-CcHHHHHHHHHHHHh
Q 036275 204 EMIDAGCYPDGGTAK-VLISACSSE-DQIEQVTTLVRTMHK 242 (271)
Q Consensus 204 ~m~~~~~~p~~~~~~-~l~~~~~~~-g~~~~a~~~~~~~~~ 242 (271)
...+. .|+..... .+-..+... +.++++.++|.+..+
T Consensus 160 ~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 160 RNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp GGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 87765 45554333 333334443 668889999988765
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=1.2e-07 Score=69.38 Aligned_cols=121 Identities=7% Similarity=0.083 Sum_probs=93.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCCH--H
Q 036275 85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI-YGRGGFI--E 161 (271)
Q Consensus 85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~ 161 (271)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888888888877764 3467788888899999999999999999887763 4467778888888 7788888 9
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
+|...+++..... +-+...+..+...+...|++++|...+++..+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999887753 234677888888899999999999999988875
No 138
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.70 E-value=1.4e-05 Score=63.90 Aligned_cols=201 Identities=10% Similarity=-0.022 Sum_probs=156.8
Q ss_pred chHHHHHH--hc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CChHHHHHHHHHHHHCCCCCCHHHH
Q 036275 44 PNLFVFIF--SI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAY----SKT---GNVAKCEGVINQMHKSGLKPDTFVI 112 (271)
Q Consensus 44 y~~ll~~~--~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~ 112 (271)
||.--..+ .| +++++++.++.+...+ |-+..+|+.--..+ ... +++++++.+++++.+... -+...|
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW 147 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVW 147 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 44444444 55 9999999999999887 55777887765555 555 789999999999998763 378888
Q ss_pred HHHHHHHHccCCHh--HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC------HHHHHHHHHhchhCCCCCCHHHHHH
Q 036275 113 NSMLNLYGRLGQFE--KMEEVLTAMEKGSYAADISTYNILINIYGRGGF------IEKMEGLFQSLPAKRLKPDVVTWTS 184 (271)
Q Consensus 113 ~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~ 184 (271)
+.-.-...+.|.++ +++++++.+.+.. +-+...|+.....+.+.|. ++++++.++++.... +-|...|+.
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y 225 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNY 225 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHH
Confidence 88888888888888 9999999999874 5678888888888888887 899999999888764 337889999
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 185 RLAAYSRKKLYRR-CLEIFEEMIDAG--CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 185 li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
+-..+.+.|+..+ +..+..+..+.+ -..+...+..+..++.+.|+.++|.++++.+.+.-.+..
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHH
Confidence 8888888887544 555666655432 145778899999999999999999999999987533333
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=6e-07 Score=61.70 Aligned_cols=96 Identities=8% Similarity=-0.060 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY 154 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 154 (271)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444555555555555555555555442 1234445555555555555555555555555432 23344555555555
Q ss_pred HcCCCHHHHHHHHHhchh
Q 036275 155 GRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~~ 172 (271)
...|++++|.+.|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555555555555555443
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.68 E-value=6.8e-07 Score=72.76 Aligned_cols=150 Identities=7% Similarity=-0.044 Sum_probs=119.4
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC---------------hhhHHHHH
Q 036275 88 GNVAKCEGVINQMHKSGLKP-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD---------------ISTYNILI 151 (271)
Q Consensus 88 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li 151 (271)
+++++|...|+...+. .| +...+..+...+.+.|++++|+..|++..+.. +.+ ...|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence 3445555555443332 22 45678889999999999999999999998863 223 48899999
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 231 (271)
.+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++...|+.+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998763 3367899999999999999999999999998864 446778888899999999999
Q ss_pred HH-HHHHHHHHh
Q 036275 232 QV-TTLVRTMHK 242 (271)
Q Consensus 232 ~a-~~~~~~~~~ 242 (271)
++ ..++++|..
T Consensus 282 ~a~~~~~~~~~~ 293 (336)
T 1p5q_A 282 AREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 88 456666643
No 141
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.66 E-value=1.1e-06 Score=77.83 Aligned_cols=193 Identities=12% Similarity=-0.002 Sum_probs=146.0
Q ss_pred hcCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC------------H
Q 036275 52 SIYFSDAH-AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL---------KPD------------T 109 (271)
Q Consensus 52 ~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~~~------------~ 109 (271)
.|+.++|. ++|++.... .|.+...|-..+....+.|+++.|.++|+++.+... .|+ .
T Consensus 356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 77888896 999998865 466777788888888899999999999998876410 132 2
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcC-CCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
..|...++...+.|+.+.|..+|+...+. + ..+...|...+..-.+. ++.+.|.++|+...+. .+-+...|...+.
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHH
Confidence 36788888888889999999999999876 2 12334444333333344 4589999999998775 3335667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275 188 AYSRKKLYRRCLEIFEEMIDAGCYP--DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA 247 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 247 (271)
-....|+.+.|..+|+..+.....+ ....|...++.-.+.|+.+.+..+.+++.+..+..
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 7788899999999999988764222 34578888888888999999999999998876653
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=1.8e-07 Score=74.14 Aligned_cols=165 Identities=6% Similarity=-0.053 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 036275 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 151 (271)
.+...+..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 466788889999999999999999999998874 2377889999999999999999999999998863 45678899999
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI 230 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 230 (271)
.+|...|++++|.+.|++..+.. |+. ..+...+....+.. ++ .-+..........+......+ ..+. .|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~i~~~l-~~l~-~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KK-KRWNSIEERRIHQESELHSYL-TRLI-AAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HH-HHHHHHHHTCCCCCCHHHHHH-HHHH-HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HH-HHHHHHHHHHHhhhHHHHHHH-HHHH-HHHH
Confidence 99999999999999999877542 111 01111222211111 11 112223333334444444444 3332 6889
Q ss_pred HHHHHHHHHHHhcccc
Q 036275 231 EQVTTLVRTMHKDMKT 246 (271)
Q Consensus 231 ~~a~~~~~~~~~~~~~ 246 (271)
++|.+.+++..+..+.
T Consensus 152 ~~A~~~~~~al~~~p~ 167 (281)
T 2c2l_A 152 ERELEECQRNHEGHED 167 (281)
T ss_dssp HHHHTTTSGGGTTTSC
T ss_pred HHHHHHHHhhhccccc
Confidence 9999888887765543
No 143
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.65 E-value=2.9e-06 Score=75.19 Aligned_cols=209 Identities=9% Similarity=0.008 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHH
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE-GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT 133 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 133 (271)
.+++..+|++..... +-....|-..+..+...|+.++|. .+|++.... .+.+...|-..+...-+.|+++.|.++|+
T Consensus 325 ~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 325 KARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345667888887763 668889999999889999999997 999999875 34566778888888999999999999999
Q ss_pred HHHhCC---------CCCC------------hhhHHHHHHHHHcCCCHHHHHHHHHhchhC-CCCCCHHHHHHHHHHHHh
Q 036275 134 AMEKGS---------YAAD------------ISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTSRLAAYSR 191 (271)
Q Consensus 134 ~m~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~ 191 (271)
.+.+.. -.|+ ..+|...+....+.|..+.|.++|.+..+. +. .....|...+..-.+
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 987641 0131 346888888888999999999999999875 21 223344333332223
Q ss_pred c-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc------hhHHHHHHHhhccccccc
Q 036275 192 K-KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT------ALPIYFNLYGEKGVARSN 264 (271)
Q Consensus 192 ~-g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~G~~~~a 264 (271)
. ++.+.|.++|+..++. ++-+...+...++.....|+.+.|..+|++.....+. .+..+++.=.+.|..+.+
T Consensus 482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3 5589999999998875 3445666677788788889999999999999876652 344445555567776655
Q ss_pred hhh
Q 036275 265 LGQ 267 (271)
Q Consensus 265 ~~~ 267 (271)
...
T Consensus 561 ~~v 563 (679)
T 4e6h_A 561 RTL 563 (679)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=7.4e-07 Score=59.32 Aligned_cols=98 Identities=7% Similarity=-0.080 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHH
Q 036275 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILI 151 (271)
Q Consensus 74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li 151 (271)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3444455555555555666655555555443 2234445555555555555555555555555542 22 345555555
Q ss_pred HHHHcC-CCHHHHHHHHHhchhC
Q 036275 152 NIYGRG-GFIEKMEGLFQSLPAK 173 (271)
Q Consensus 152 ~~~~~~-g~~~~a~~~~~~m~~~ 173 (271)
.++... |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555443
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=2.5e-06 Score=57.20 Aligned_cols=94 Identities=10% Similarity=-0.037 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG 155 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 155 (271)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444444444444444444444444332 1133344444444444444444444444444331 223334444444444
Q ss_pred cCCCHHHHHHHHHhch
Q 036275 156 RGGFIEKMEGLFQSLP 171 (271)
Q Consensus 156 ~~g~~~~a~~~~~~m~ 171 (271)
..|++++|.+.+++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4444444444444443
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=1.8e-07 Score=66.64 Aligned_cols=97 Identities=8% Similarity=-0.150 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 188 (271)
...+..+...+...|++++|+..|+...... +.+...|..+..+|...|++++|.+.|++..... +-+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3455666667777777777777777776653 4456677777777777777777777777766542 2245666777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 036275 189 YSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~ 207 (271)
+...|++++|...|+...+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777665
No 147
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=7.4e-07 Score=59.30 Aligned_cols=100 Identities=9% Similarity=0.022 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 036275 144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP--DGGTAKVLI 221 (271)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~ 221 (271)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 4455556666666666666666666655442 2245556666666666666666666666666542 22 355566666
Q ss_pred HHHhcc-CcHHHHHHHHHHHHhccc
Q 036275 222 SACSSE-DQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 222 ~~~~~~-g~~~~a~~~~~~~~~~~~ 245 (271)
.++... |++++|.+.+++..+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 666666 666666666666655544
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.5e-06 Score=59.60 Aligned_cols=98 Identities=13% Similarity=0.005 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 188 (271)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|.+.+++..+.. +-+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666677777777777777777776653 4456777777777777777777777777766652 2245667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 036275 189 YSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~~ 208 (271)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777776653
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=3.9e-06 Score=56.20 Aligned_cols=106 Identities=15% Similarity=-0.060 Sum_probs=86.6
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+...+ .|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 34445555 999999999999998875 5588899999999999999999999999998874 3367788899999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
.|++++|.+.++...+.. +.+...+..+..
T Consensus 85 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 999999999999998863 344555554443
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=8e-08 Score=71.87 Aligned_cols=88 Identities=9% Similarity=-0.095 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 224 (271)
..+..+..+|.+.|++++|...+++..... +.+...+..+..++...|++++|...|++..+.. +-+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 455555556666666666666666555432 2244555556666666666666666666655432 22344444444444
Q ss_pred hccCcHHHHH
Q 036275 225 SSEDQIEQVT 234 (271)
Q Consensus 225 ~~~g~~~~a~ 234 (271)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=2.8e-07 Score=65.04 Aligned_cols=92 Identities=11% Similarity=-0.041 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275 78 MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157 (271)
Q Consensus 78 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 157 (271)
..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..+|...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 334444444444444444444444432 1133444444444444444444444444444432 22334444444444444
Q ss_pred CCHHHHHHHHHhch
Q 036275 158 GFIEKMEGLFQSLP 171 (271)
Q Consensus 158 g~~~~a~~~~~~m~ 171 (271)
|++++|.+.|+...
T Consensus 100 g~~~~A~~~~~~al 113 (142)
T 2xcb_A 100 GDLDGAESGFYSAR 113 (142)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.60 E-value=1e-06 Score=60.97 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCC--CCCC----hhhHHH
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS--YAAD----ISTYNI 149 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~----~~~~~~ 149 (271)
.+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555442 1234445555555555555555555555444321 0000 123334
Q ss_pred HHHHHHcCCCHHHHHHHHHhch
Q 036275 150 LINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 150 li~~~~~~g~~~~a~~~~~~m~ 171 (271)
+..++...|++++|.+.|++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444445555555444443
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=5.5e-06 Score=69.34 Aligned_cols=191 Identities=9% Similarity=-0.013 Sum_probs=139.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----H
Q 036275 52 SIYFSDAHAVFEEMKRLGITPT----------------MKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDT----F 110 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~ 110 (271)
.|++++|++.|..+.+..-... ...+..+...|...|++++|.+++.++...- ..++. .
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 8999999999999987642211 1247789999999999999999998876531 11122 2
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHh----CCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCCC-HH
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEK----GSYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAK----RLKPD-VV 180 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~ 180 (271)
+.+.+-..+...|+.+++.++++.... .+..+. ..++..+...|...|++++|..+++++... +-.+. ..
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence 233444455567899999999887653 232333 567888999999999999999999986532 11222 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMID----AGCYPD--GGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
++..+++.|...|++++|..++++... .+.++. ...+..+...+...|++++|...+.+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 788899999999999999999988654 221111 24566777788899999999998887754
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=6.8e-07 Score=61.26 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC--CCC----hhhHH
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY--AAD----ISTYN 148 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~ 148 (271)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344445555555555555555555554432 22344455555555555555555555555443310 011 33444
Q ss_pred HHHHHHHcCCCHHHHHHHHHhchh
Q 036275 149 ILINIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 149 ~li~~~~~~g~~~~a~~~~~~m~~ 172 (271)
.+..++...|++++|.+.|++...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555555555555555444
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=1.4e-06 Score=60.27 Aligned_cols=107 Identities=12% Similarity=0.105 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC--CCCC----HHHHH
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--LKPD----VVTWT 183 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~~~ 183 (271)
..+..+...+.+.|++++|++.|++..+.. |.+...|..+..+|.+.|++++|++.+++..+.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456778888888889999998888888763 4567788888888888888888888888876531 1111 13566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036275 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219 (271)
Q Consensus 184 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 219 (271)
.+..++...|++++|.+.|++.++. .||..+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 7777778888888888888887663 456554443
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=1.8e-06 Score=60.02 Aligned_cols=97 Identities=5% Similarity=-0.159 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
++..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45555555555555555666655555555443 1234455555555555555555555555555442 233445555555
Q ss_pred HHHcCCCHHHHHHHHHhch
Q 036275 153 IYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~ 171 (271)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555544
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.57 E-value=1.9e-06 Score=64.26 Aligned_cols=153 Identities=9% Similarity=0.011 Sum_probs=95.8
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---------------HHHHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD---------------TFVINSML 116 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li 116 (271)
.|.++.+.+.|+.-.... ......+..+...+...|++++|+..|++..+....-. ...+..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 455555555554322211 12345566677777778888888888877776532111 26777888
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036275 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR 196 (271)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 196 (271)
.++...|++++|+..++...+.. +.+...+..+..+|...|++++|.+.|++..... +-+...+..+...+...++.+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHH
Confidence 88888899999988888887763 4567788888888888999999999888877652 224567777777777777666
Q ss_pred HHH-HHHHHHHH
Q 036275 197 RCL-EIFEEMID 207 (271)
Q Consensus 197 ~a~-~~~~~m~~ 207 (271)
++. ..+..|..
T Consensus 174 ~~~~~~~~~~f~ 185 (198)
T 2fbn_A 174 KKDKLTFGGMFD 185 (198)
T ss_dssp C-----------
T ss_pred HHHHHHHHHHhc
Confidence 665 44444443
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.53 E-value=8.3e-07 Score=60.83 Aligned_cols=111 Identities=9% Similarity=0.085 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC--CCC----HHHH
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL--KPD----VVTW 182 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~ 182 (271)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456677778888888888888888877753 45677777888888888888888888887765421 112 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275 183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS 222 (271)
Q Consensus 183 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 222 (271)
..+...+...|++++|...+++..+. .|+......+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 77777888888888888888887764 345554444433
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.53 E-value=1.3e-05 Score=65.01 Aligned_cols=172 Identities=11% Similarity=-0.006 Sum_probs=108.9
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-CHhHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL-G-QFEKM 128 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~a 128 (271)
.+..++|+++++++...+ |-+..+|+.--..+...| .+++++.+++.+.....+ +..+|+.-...+... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 445567888888877776 556677777666666666 477888888777776533 555666655555554 5 67777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH--------HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC------
Q 036275 129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIE--------KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL------ 194 (271)
Q Consensus 129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------ 194 (271)
+++++.+.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchH
Confidence 77777777653 445666665555555555554 77777777766532 256677777666666654
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275 195 -YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED 228 (271)
Q Consensus 195 -~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 228 (271)
++++++.+++..... +-|...|..+-..+.+.|
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 566777777666543 335566655444444433
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=8.5e-06 Score=57.10 Aligned_cols=96 Identities=11% Similarity=-0.087 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD----ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS 184 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 184 (271)
...+..+...+...|++++|.+.|++..+. .|+ ...+..+..+|...|++++|.+.+++..... +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 334444444444555555555555544443 222 3444444455555555555555555444331 113344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 036275 185 RLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
+..++...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555444
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=4.5e-06 Score=58.57 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhH
Q 036275 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD----TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY 147 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 147 (271)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35666777777777778888888888777765 344 4566777777777888888888877776652 3456677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 148 NILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
..+..++...|++++|.+.|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777788888888888888777654
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=2.1e-06 Score=61.90 Aligned_cols=98 Identities=10% Similarity=-0.066 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34555566666666666666666666666553 2245556666666666666666666666665542 334556666666
Q ss_pred HHHcCCCHHHHHHHHHhchh
Q 036275 153 IYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~~ 172 (271)
+|...|++++|.+.|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=3.4e-06 Score=60.86 Aligned_cols=99 Identities=16% Similarity=0.052 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
+...+..+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678888889999999999999999988863 4578889999999999999999999999988763 235788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 036275 188 AYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~ 208 (271)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.52 E-value=2.5e-06 Score=72.83 Aligned_cols=114 Identities=11% Similarity=-0.070 Sum_probs=94.7
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+... -+...+..+..+|...|++++|.+.
T Consensus 19 ~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999999998875 55799999999999999999999999999998853 3678899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHH--HHcCCCHHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINI--YGRGGFIEKMEGLFQ 168 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 168 (271)
+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 97 ~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99988763 3345566666666 888999999999998
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=4.3e-06 Score=58.00 Aligned_cols=99 Identities=7% Similarity=-0.104 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186 (271)
Q Consensus 107 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 186 (271)
.+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..... +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 356667777777777777777777777776653 4456677777777777777777777777776643 22456777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 036275 187 AAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~~ 207 (271)
.++...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777654
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.48 E-value=2.7e-06 Score=59.83 Aligned_cols=97 Identities=7% Similarity=-0.135 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 189 (271)
..+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|++..... +-+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345556667778888888888888777653 4467777778888888888888888888777653 22456677777778
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 036275 190 SRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~ 208 (271)
...|++++|...|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888777653
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.42 E-value=1.7e-06 Score=61.41 Aligned_cols=132 Identities=17% Similarity=0.011 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCC-Ch
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-PD----TFVINSMLNLYGRLGQFEKMEEVLTAMEKG----SYAA-DI 144 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~ 144 (271)
.++..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|.+.+++..+. +-++ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555666666666666666666655432100 01 124555666666666666666666655432 1001 13
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPAK----RLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
..+..+...+...|++++|.+.+++.... +..+ ...++..+...+...|++++|...+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34555555566666666666665554321 1000 01234444455555555555555555443
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.39 E-value=2.2e-05 Score=53.70 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=44.3
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTM---KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD---TFVINSMLNLYGRLGQF 125 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~ 125 (271)
.|++++|.+.|+...+.. +.+. ..+..+..++.+.|++++|...|++..+.... + ...+..+..++...|++
T Consensus 15 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~ 92 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKN 92 (129)
T ss_dssp TTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCH
T ss_pred hCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCH
Confidence 566666666666555543 2222 34555555555556666666665555544211 1 34444555555555555
Q ss_pred hHHHHHHHHHHhC
Q 036275 126 EKMEEVLTAMEKG 138 (271)
Q Consensus 126 ~~a~~~~~~m~~~ 138 (271)
++|...|+.+.+.
T Consensus 93 ~~A~~~~~~~~~~ 105 (129)
T 2xev_A 93 TEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=3.2e-06 Score=57.84 Aligned_cols=22 Identities=5% Similarity=0.010 Sum_probs=8.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 036275 183 TSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 183 ~~li~~~~~~g~~~~a~~~~~~ 204 (271)
..+..++...|++++|...+++
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333333333333333333
No 170
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=5.5e-06 Score=65.09 Aligned_cols=139 Identities=11% Similarity=0.010 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHH
Q 036275 77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD--ISTYNILINIY 154 (271)
Q Consensus 77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~ 154 (271)
+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3446677889999999999999888764 444455666678899999999999998654432 121 34678889999
Q ss_pred HcCCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275 155 GRGGFIEKMEGLFQSLPAKRLKPD--VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL 220 (271)
Q Consensus 155 ~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 220 (271)
...|++++|++.|++.......|. .........++.+.|+.++|..+|+++... .|+......|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 999999999999999875433254 346777788889999999999999999986 4664444443
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.36 E-value=5.6e-06 Score=56.61 Aligned_cols=93 Identities=10% Similarity=-0.120 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275 78 MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157 (271)
Q Consensus 78 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 157 (271)
..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..+++..+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344445555555666666555555542 1244455555555555566666666555555542 23445555555555555
Q ss_pred CCHHHHHHHHHhchh
Q 036275 158 GFIEKMEGLFQSLPA 172 (271)
Q Consensus 158 g~~~~a~~~~~~m~~ 172 (271)
|++++|...+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666655555544
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=8.1e-06 Score=55.93 Aligned_cols=92 Identities=9% Similarity=-0.034 Sum_probs=46.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC---hhhHHHHHHH
Q 036275 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDT---FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD---ISTYNILINI 153 (271)
Q Consensus 80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~ 153 (271)
+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...++...+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 344455555666666666555543211 11 344445555555555555555555555432 122 3444455555
Q ss_pred HHcCCCHHHHHHHHHhchhC
Q 036275 154 YGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 154 ~~~~g~~~~a~~~~~~m~~~ 173 (271)
+...|++++|.+.|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=3.7e-06 Score=59.68 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCC-CH
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA-AD----ISTYNILINIYGRGGFIEKMEGLFQSLPAK----RLKP-DV 179 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~ 179 (271)
.++..+...+...|++++|.+.+++..+..-. .+ ..++..+...+...|++++|.+.+++.... +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46778888999999999999999887653100 11 247888999999999999999999986642 1111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDA----GCYP-DGGTAKVLISACSSEDQIEQVTTLVRTMHKD 243 (271)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 243 (271)
..+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46778888899999999999999887642 2111 1346777888899999999999999987653
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.32 E-value=1.2e-05 Score=68.15 Aligned_cols=131 Identities=12% Similarity=-0.035 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD--------------TFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
....|..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677777888888888888888888776532211 466777777888888888888888877775
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 036275 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLE-IFEEMI 206 (271)
Q Consensus 139 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~-~~~~m~ 206 (271)
. +.+...|..+..+|...|++++|...|++..+. .| +...+..+..++...++.+++.+ .++.|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 445777777888888888888888888877765 33 34566777777777777766553 344443
No 175
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.32 E-value=0.00026 Score=57.36 Aligned_cols=203 Identities=7% Similarity=-0.036 Sum_probs=148.0
Q ss_pred chHHHHHH--hc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275 44 PNLFVFIF--SI-YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT-G-NVAKCEGVINQMHKSGLKPDTFVINSMLNL 118 (271)
Q Consensus 44 y~~ll~~~--~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 118 (271)
||.--..+ .| .++++++.++.+...+ +-+..+|+.-...+.+. + +.++++++++++.+.... +...|+.-.-.
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wv 168 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWL 168 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 44433344 55 6999999999999887 66888999888777776 7 889999999999987643 77777776666
Q ss_pred HHccCCHh--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-------HHHHHHHHHhchhCCCCCCHHHHH
Q 036275 119 YGRLGQFE--------KMEEVLTAMEKGSYAADISTYNILINIYGRGGF-------IEKMEGLFQSLPAKRLKPDVVTWT 183 (271)
Q Consensus 119 ~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~ 183 (271)
..+.|.++ ++++..+++.+.. +-|...|+.....+.+.+. ++++++.+++..... +-|...|+
T Consensus 169 l~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~ 246 (349)
T 3q7a_A 169 YSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWN 246 (349)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 65555565 8999999998874 5688899999888888886 688999998877653 33677888
Q ss_pred HHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036275 184 SRLAAYSRKKLY--------------------RRCLEIFEEMIDAG-----CYPDGGTAKVLISACSSEDQIEQVTTLVR 238 (271)
Q Consensus 184 ~li~~~~~~g~~--------------------~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 238 (271)
.+-..+.+.|+. .+......++...+ -.++......++..|...|+.++|.++++
T Consensus 247 Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 247 YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 777777666653 23333333333221 14678888999999999999999999999
Q ss_pred HHHhcccchhHH
Q 036275 239 TMHKDMKTALPI 250 (271)
Q Consensus 239 ~~~~~~~~~~~~ 250 (271)
.+.+...+.-..
T Consensus 327 ~l~~~~dpir~~ 338 (349)
T 3q7a_A 327 KLSSEYDQMRAG 338 (349)
T ss_dssp HHHHTTCGGGHH
T ss_pred HHHhhhChHHHH
Confidence 997665544333
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=4.5e-05 Score=63.73 Aligned_cols=188 Identities=9% Similarity=0.016 Sum_probs=131.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCC
Q 036275 81 LTAYSKTGNVAKCEGVINQMHKSGLKPD----------------TFVINSMLNLYGRLGQFEKMEEVLTAMEKG--SYAA 142 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~ 142 (271)
...+.+.|++++|++.|.++.+.....+ ...+..+...|...|++++|.+++..+.+. .+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556788999999999999987632211 124678899999999999999999887642 1111
Q ss_pred --C-hhhHHHHHHHHHcCCCHHHHHHHHHhchh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCC-
Q 036275 143 --D-ISTYNILINIYGRGGFIEKMEGLFQSLPA----KRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCY- 211 (271)
Q Consensus 143 --~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~- 211 (271)
. ..+.+.+...+...|+.++|.++++.... .+..+. ..++..+...+...|++++|..++++... .+..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12344455556678999999999887653 333333 45788899999999999999999998764 2211
Q ss_pred -C-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc---cchhH-------HHHHHHhhccccccchhhh
Q 036275 212 -P-DGGTAKVLISACSSEDQIEQVTTLVRTMHKDM---KTALP-------IYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 212 -p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-------~~~~~~~~~G~~~~a~~~~ 268 (271)
+ ...++..+.+.|...|++++|..++++..... ..+.. .....+...|++++|...|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1 24578888999999999999999999876432 11111 1233456677777776554
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.28 E-value=1.2e-05 Score=57.78 Aligned_cols=99 Identities=8% Similarity=-0.010 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 036275 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKS-------GL----------KPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136 (271)
Q Consensus 74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 136 (271)
+..+......+.+.|++++|+..|.+..+. .- +.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666777777778888877777776653 00 1122455666666666666666666666666
Q ss_pred hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 137 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
+.. +.+...|..+..+|...|++++|...|++....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 542 334556666666666666666666666665554
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=1.6e-06 Score=58.90 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=40.1
Q ss_pred cCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275 53 IYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 53 g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 130 (271)
|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+.... +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555554432 1223444555555555555555555555555544321 34444555555555555555555
Q ss_pred HHHHHHh
Q 036275 131 VLTAMEK 137 (271)
Q Consensus 131 ~~~~m~~ 137 (271)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=5.4e-06 Score=70.73 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=45.6
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhC-----C-CCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----CCCC-C
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEKG-----S-YAA-DISTYNILINIYGRGGFIEKMEGLFQSLPA-----KRLK-P 177 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-~ 177 (271)
+++.|..+|...|++++|+.++++..+. | -.| ...+++.|...|...|++++|+.++++... .|.. |
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3455555555555555555555443321 1 011 234455555555555555555555554432 1211 1
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 178 D-VVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 178 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
+ ..+...+-.++...+.+++|..++..+++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12334444555555556666666655554
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=1.7e-05 Score=65.31 Aligned_cols=96 Identities=3% Similarity=-0.113 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC--------------C-CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSG--------------L-KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 140 (271)
.+..+...+.+.|++++|+..|++..+.- . +.+...|..+..+|.+.|++++|++.+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 35555566666666666666666655410 0 1122344444555555555555555555554432
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275 141 AADISTYNILINIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 141 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 172 (271)
+.+...+..+..+|...|++++|.+.|++..+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22344444455555555555555555554443
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=3.3e-06 Score=72.12 Aligned_cols=120 Identities=11% Similarity=-0.023 Sum_probs=63.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 036275 82 TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE 161 (271)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 161 (271)
..+.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|++.+++..+.. +.+..++..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34455666666666666665543 2245556666666666666666666666666542 334556666666666666666
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 036275 162 KMEGLFQSLPAKRLKPDVVTWTSRLAA--YSRKKLYRRCLEIFEE 204 (271)
Q Consensus 162 ~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~ 204 (271)
+|.+.|++..+... -+...+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 66666666554321 122233333333 5555666666655544
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.24 E-value=0.00055 Score=55.15 Aligned_cols=199 Identities=7% Similarity=-0.003 Sum_probs=146.1
Q ss_pred chHHHHHH-----hcCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC
Q 036275 44 PNLFVFIF-----SIYF-SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----------VAKCEGVINQMHKSGLKP 107 (271)
Q Consensus 44 y~~ll~~~-----~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~ 107 (271)
|..+.... .|.+ ++|++.++.+...+ |-+..+|+.--..+...+. +++++.+++.+.....+
T Consensus 29 y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK- 106 (331)
T 3dss_A 29 YQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK- 106 (331)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-
Confidence 55555554 5554 48999999999876 5567777765444444333 67889999999887543
Q ss_pred CHHHHHHHHHHHHccC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-HHHHHHHHHhchhCCCCCCHHHHHH
Q 036275 108 DTFVINSMLNLYGRLG--QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTS 184 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ 184 (271)
+..+|+.-...+...+ .+++++++++.+.+.. +.+..+|+.-.-.+...|. ++++++.++.+.+... -|...|+.
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~ 184 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHY 184 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence 7778877777777777 4899999999999874 5678888888888888888 6899999999887643 36778887
Q ss_pred HHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------CcHHHHHHHHHH
Q 036275 185 RLAAYSRK--------------KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE-----------DQIEQVTTLVRT 239 (271)
Q Consensus 185 li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~ 239 (271)
....+... +.++++.+.+....... +-|...|..+-..+.+. +.++++.+.+++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 77766654 45788999999888753 44677776554444444 467889999999
Q ss_pred HHhcccch
Q 036275 240 MHKDMKTA 247 (271)
Q Consensus 240 ~~~~~~~~ 247 (271)
+.+..+..
T Consensus 264 lle~~pd~ 271 (331)
T 3dss_A 264 LQELEPEN 271 (331)
T ss_dssp HHHHCTTC
T ss_pred HHhhCccc
Confidence 88766543
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.23 E-value=2.9e-06 Score=57.56 Aligned_cols=83 Identities=11% Similarity=-0.022 Sum_probs=34.0
Q ss_pred CCHhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGS--YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
|++++|+..|++..+.+ -+.+...+..+..+|...|++++|.+.|++..+.. +-+..++..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444444432 11123344444444444444444444444444331 1123344444444444444444444
Q ss_pred HHHHHH
Q 036275 201 IFEEMI 206 (271)
Q Consensus 201 ~~~~m~ 206 (271)
.+++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=2e-05 Score=64.88 Aligned_cols=124 Identities=8% Similarity=-0.049 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKG---------------SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 174 (271)
..+..+...+.+.|++++|++.|++..+. --+.+..+|..+..+|.+.|++++|.+.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34777888899999999999999988761 012345677888888888888888888888887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036275 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235 (271)
Q Consensus 175 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 235 (271)
+-+...|..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2256778888888888888888888888877753 2355566666666666666555543
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.22 E-value=2.2e-05 Score=66.60 Aligned_cols=126 Identities=6% Similarity=-0.022 Sum_probs=101.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPT---------------MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK 106 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 106 (271)
|..+-..+ .|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..+++..+.. +
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 55555555 999999999999998864 223 6889999999999999999999999999875 3
Q ss_pred CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH-HHHhchh
Q 036275 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPA 172 (271)
Q Consensus 107 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~ 172 (271)
.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++.+++.+ ++..|..
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367889999999999999999999999999863 4467888999999999999887764 4555543
No 186
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.22 E-value=7e-05 Score=52.36 Aligned_cols=111 Identities=10% Similarity=-0.109 Sum_probs=61.5
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHhHH
Q 036275 53 IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----LGQFEKM 128 (271)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a 128 (271)
+++++|.+.|++..+.| .+... +...|...+.+++|+++|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45566666666666655 22322 4444555555666666666666553 44455555555555 5566666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCC
Q 036275 129 EEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKR 174 (271)
Q Consensus 129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 174 (271)
.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665554 34445555555555 555666666665555543
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.21 E-value=8e-06 Score=66.45 Aligned_cols=61 Identities=5% Similarity=-0.046 Sum_probs=32.1
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 172 (271)
.|..+..++.+.|++++|+..++...+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555432 23445555555555555555555555555544
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=2.8e-05 Score=55.78 Aligned_cols=99 Identities=9% Similarity=-0.009 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhC-------C----------CCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-------S----------YAADISTYNILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
...+......+.+.|++++|+..|.+..+. . -+.+...|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777777788888888877776653 0 01123455666666666666666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 172 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
... +.+...|..+..++...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 542 223556666666666666666666666665554
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.17 E-value=0.0004 Score=60.50 Aligned_cols=173 Identities=8% Similarity=0.012 Sum_probs=125.0
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----------VAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
....++|++.++++.+.+ |-+..+|+.--.++...|+ ++++++.++++.+...+ +..+|+.-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 444567889999988876 5577788777777766666 88888888888887544 67778777777778
Q ss_pred cC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC-CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc------
Q 036275 122 LG--QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK------ 192 (271)
Q Consensus 122 ~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~------ 192 (271)
.+ +++++++.++.+.+.. +.+..+|+.-...+.+.| .++++.+.++++.+... -+..+|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccc
Confidence 88 6688999998888864 557778888877788888 78888888888877643 2667787777766653
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036275 193 --------KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ 229 (271)
Q Consensus 193 --------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 229 (271)
+.++++.+.+++..... +-|...|...-..+.+.+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 44677777777766543 3355666665555555544
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=0.0001 Score=51.56 Aligned_cols=110 Identities=10% Similarity=-0.035 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHH
Q 036275 89 NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKME 164 (271)
Q Consensus 89 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 164 (271)
+.++|++.|++..+.| .|+.. |...|...+..++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666665 22332 4555555556666666666666654 45555666666665 56666666
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 036275 165 GLFQSLPAKRLKPDVVTWTSRLAAYSR----KKLYRRCLEIFEEMIDAG 209 (271)
Q Consensus 165 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 209 (271)
+.|++..+.| +...+..|-..|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666554 45556666666665 566666666666666554
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.16 E-value=2e-05 Score=67.19 Aligned_cols=127 Identities=6% Similarity=-0.049 Sum_probs=89.5
Q ss_pred HHHccCCHhHHHHHHHHHHhC---CCC---C-ChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----CCC-CCC-HHHHH
Q 036275 118 LYGRLGQFEKMEEVLTAMEKG---SYA---A-DISTYNILINIYGRGGFIEKMEGLFQSLPA-----KRL-KPD-VVTWT 183 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~---~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~~-~~~~~ 183 (271)
.+...|++++|+.++++..+. -+. | ...+++.|..+|...|++++|+.++++... .|. -|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345778888888888776542 111 2 356788899999999999999998887653 221 222 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 184 SRLAAYSRKKLYRRCLEIFEEMID-----AGC-YPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 184 ~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
.|...|...|++++|..++++.++ .|- .|+ ..+...+-.++...+.+++|+.++.++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999888887542 231 122 3345566667778888999999999887643
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=9.7e-06 Score=65.97 Aligned_cols=97 Identities=8% Similarity=-0.008 Sum_probs=53.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD-GGTAKVLISA- 223 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~- 223 (271)
.|..+..+|.+.|++++|...+++..+.. +-+...|..+..+|...|++++|...|++..+. .|+ ...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 78889999999999999999999988753 236788999999999999999999999998764 343 3444444444
Q ss_pred HhccCcHHHHHHHHHHHHhccc
Q 036275 224 CSSEDQIEQVTTLVRTMHKDMK 245 (271)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~~~ 245 (271)
....+..+++..+|+++....+
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCC
Confidence 2345667788888888866544
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=6.4e-06 Score=54.76 Aligned_cols=95 Identities=9% Similarity=-0.014 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-------hh
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD-------IS 145 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-------~~ 145 (271)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34556666667777777777777777666653 225566666677777777777777777776664 233 34
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
.+..+..++...|+.+.|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4445555555555555554444433
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=6.4e-05 Score=53.63 Aligned_cols=97 Identities=8% Similarity=-0.018 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-----CH-----HHHHHHHHHHHccCCHhHHHHHHHHHHhC-----
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-P-----DT-----FVINSMLNLYGRLGQFEKMEEVLTAMEKG----- 138 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 138 (271)
..+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34445556666667777777777766654211 0 11 25555555556666666666555555442
Q ss_pred CCCC-ChhhH----HHHHHHHHcCCCHHHHHHHHHhch
Q 036275 139 SYAA-DISTY----NILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 139 ~~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
.+.| +...| .....++...|++++|+..|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 0022 23344 445555555555555555555443
No 195
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.0018 Score=52.20 Aligned_cols=187 Identities=10% Similarity=0.003 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HhHHHHH
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG--NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEV 131 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~ 131 (271)
+++++.+++.+...+ |-+..+|+.-.-.+...+ .+++++.+++++.+.... |...|+.-.-.....|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 688999999998876 668999998888888887 489999999999988644 78888887777778888 5899999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcC--------------CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc-----
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRG--------------GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK----- 192 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----- 192 (271)
++.+.+.. +-|...|+.....+.+. +.++++++.+....... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 99999874 56778887776666554 45788999999887653 33677777555554444
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 193 ------KLYRRCLEIFEEMIDAGCYPDGGTAKV-----LISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 193 ------g~~~~a~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
+.++++.+.++++.+. .||. .|.. +.......+..+++..++.++.+-++.-.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 4578899999999875 4554 2322 22222346778889999999887665443
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.96 E-value=0.00098 Score=58.04 Aligned_cols=172 Identities=9% Similarity=-0.030 Sum_probs=131.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275 88 GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ----------FEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157 (271)
Q Consensus 88 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 157 (271)
..-++|++.++++...... +...|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 4457889999999987533 45567766666666666 899999999999874 56788999999999999
Q ss_pred C--CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------
Q 036275 158 G--FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK-LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE------- 227 (271)
Q Consensus 158 g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------- 227 (271)
| +++++.+.++++.+... -+..+|+.-.......| .++++.+.++++.+.. +-|...|......+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 77999999999998753 37888988888888888 8999999999998875 44777887766665542
Q ss_pred -------CcHHHHHHHHHHHHhcccch---hHHHHHHHhhcccccc
Q 036275 228 -------DQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARS 263 (271)
Q Consensus 228 -------g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~ 263 (271)
+.++++.+.+++..+..+.. +.-+-.++.+.|...+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 56889999999887765544 3334445666666444
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.0001 Score=48.67 Aligned_cols=65 Identities=9% Similarity=0.139 Sum_probs=39.7
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
+...+..+...+...|++++|.+.|++..... +.+...+..+..++...|++++|...+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34555666666666666666666666665542 224556666666666666666666666666554
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.86 E-value=9.3e-05 Score=49.61 Aligned_cols=61 Identities=13% Similarity=0.016 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
...+..+...+...|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444444331 223334444444444444444444444443
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.86 E-value=0.00018 Score=45.62 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
..+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344445555555555555555555554432 123444445555555555555555555555443
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.85 E-value=9e-05 Score=52.77 Aligned_cols=93 Identities=9% Similarity=0.034 Sum_probs=61.3
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA----------KCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
.+.+++|.+.++...+.+ |.+...|..+..++.+.++++ +|+..|++.++.... +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 456788888888888876 668888888888888877654 666666666665322 44566666666665
Q ss_pred cC-----------CHhHHHHHHHHHHhCCCCCChhhHH
Q 036275 122 LG-----------QFEKMEEVLTAMEKGSYAADISTYN 148 (271)
Q Consensus 122 ~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~ 148 (271)
.| ++++|++.|++..+. .|+...|.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 53 566666666665553 34444333
No 201
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=0.00026 Score=50.46 Aligned_cols=96 Identities=11% Similarity=0.001 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--------h-----hhHHHHHHHHHcCCCHHHHHHHHHhchhC---
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD--------I-----STYNILINIYGRGGFIEKMEGLFQSLPAK--- 173 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--------~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 173 (271)
..+......+.+.|++++|++.|++..+.. |+ . ..|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 345667777888999999999999888752 32 2 27788888888888888888888877653
Q ss_pred --CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 174 --RLKPD-VVTW----TSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 174 --g~~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
.+.|+ ...| .....++...|++++|...|++..+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12454 3466 7777777888888888888877654
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.84 E-value=0.00027 Score=47.28 Aligned_cols=80 Identities=10% Similarity=0.006 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 036275 57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136 (271)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 136 (271)
.|++.|++..+.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677888887765 5688899999999999999999999999998875 3357788899999999999999999999887
Q ss_pred hC
Q 036275 137 KG 138 (271)
Q Consensus 137 ~~ 138 (271)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 203
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.77 E-value=0.0019 Score=55.21 Aligned_cols=196 Identities=10% Similarity=-0.058 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHH
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA 134 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 134 (271)
.+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... +.+...+.. |+...+.++. ++.
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHH
Confidence 345677888877654 667888888888888899999999999988877 334333322 2222111222 222
Q ss_pred HHhCC---------C---CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 036275 135 MEKGS---------Y---AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEI 201 (271)
Q Consensus 135 m~~~~---------~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~ 201 (271)
+.+.- . ......|...+....+.+..+.|..+|++. ... ..+...|-.....-.. .++.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 22210 0 011345666677776777888888888888 321 1234444322222112 2368888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccc
Q 036275 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSN 264 (271)
Q Consensus 202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a 264 (271)
|+...+.- +-+...+...++...+.|+.+.|..+|+++.+ ....+..+++.=...|+.+.+
T Consensus 343 fe~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 343 FSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHH
Confidence 88877642 22234445556666777888888888888732 223333333333344544433
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.00042 Score=43.80 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
..+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.+++....
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555556666666666666666655542 334555555666666666666666666655543
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.61 E-value=0.0034 Score=51.02 Aligned_cols=169 Identities=8% Similarity=0.002 Sum_probs=106.3
Q ss_pred chHHHHHHhcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c---CChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 036275 44 PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK--T---GNVAKCEGVINQMHKSGLKPD-TFVINSMLN 117 (271)
Q Consensus 44 y~~ll~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~ 117 (271)
-..++.+....+..++. +... .+.+.+...|...+.+... . ....+|..+|++..+. .|+ ...|..+.-
T Consensus 167 ~~~I~~aL~~~l~~~e~--~r~~-~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~ 241 (372)
T 3ly7_A 167 LESLSKALNQPWPQRMQ--ETLQ-KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKAL 241 (372)
T ss_dssp HHHHHHHTTCCCCHHHH--HHHH-HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHhCchhhHHHH--HHHh-ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 44566666333333221 1122 2236678888887766543 2 2357889999998887 454 233433333
Q ss_pred HHHc---cC--CHhHHH---HHHHHHHh-CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275 118 LYGR---LG--QFEKME---EVLTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188 (271)
Q Consensus 118 ~~~~---~g--~~~~a~---~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 188 (271)
+|.. .+ ...... ..++.... ..-+.+..+|..+...+...|++++|...++++...+ |+...|..+...
T Consensus 242 a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~ 319 (372)
T 3ly7_A 242 VDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKV 319 (372)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Confidence 3321 11 111111 12222111 1125678888888887888899999999999999874 788788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036275 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221 (271)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 221 (271)
+.-.|++++|.+.+++.... .|...||...-
T Consensus 320 ~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~~ 350 (372)
T 3ly7_A 320 YEMKGMNREAADAYLTAFNL--RPGANTLYWIE 350 (372)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--SCSHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCcChHHHHh
Confidence 99999999999999988775 57887766443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.59 E-value=0.00011 Score=52.23 Aligned_cols=86 Identities=12% Similarity=-0.027 Sum_probs=50.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH----------hHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036275 86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF----------EKMEEVLTAMEKGSYAADISTYNILINIYG 155 (271)
Q Consensus 86 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 155 (271)
+.+.+++|.+.+++..+.. +-+...|..+..++...+++ ++|+..|++..+.. +.+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3445667777777766654 23566666666666666554 36666666666642 334556666666666
Q ss_pred cCC-----------CHHHHHHHHHhchhC
Q 036275 156 RGG-----------FIEKMEGLFQSLPAK 173 (271)
Q Consensus 156 ~~g-----------~~~~a~~~~~~m~~~ 173 (271)
..| ++++|.+.|++..+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 553 455555555555443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.52 E-value=0.0007 Score=44.11 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
...+..+...+...|++++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444445555555555555555444432 2234444455555555555555555555443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.52 E-value=0.00056 Score=44.61 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME 136 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 136 (271)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444444443211 23344444444444444444444444433
No 209
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.50 E-value=0.013 Score=50.15 Aligned_cols=182 Identities=11% Similarity=-0.004 Sum_probs=117.9
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------C---CCCH
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---------L---KPDT 109 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~---~~~~ 109 (271)
|-..+..+ .|+++.|.++|.+.... |.+...|.. |....+.++. ++.+.+.- . ....
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELD 286 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccH
Confidence 33334434 89999999999999987 445444332 2222122222 33332210 0 1112
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275 110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188 (271)
Q Consensus 110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 188 (271)
..|...++...+.++.+.|..+|+.. +.. ..+...|......-.. .++.+.|..+|+...+.- .-++..+...+.-
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45677777777788899999999999 321 1233444322222222 236999999999987652 2235556667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
....|+.+.|..+|+... .....|...+..-...|+.+.+..++++..+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788999999999999962 2567788888877788999999998888764
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.50 E-value=0.00042 Score=58.13 Aligned_cols=84 Identities=8% Similarity=-0.010 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHHC---CCC---CC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----C-CCCC-hhhHHHHHHH
Q 036275 88 GNVAKCEGVINQMHKS---GLK---PD-TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----S-YAAD-ISTYNILINI 153 (271)
Q Consensus 88 ~~~~~a~~~~~~m~~~---~~~---~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~-~~~~~~li~~ 153 (271)
|++++|+.++++..+. -+. |+ ..+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554331 111 11 234556666666666666666666554421 1 1122 3456666666
Q ss_pred HHcCCCHHHHHHHHHhch
Q 036275 154 YGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 154 ~~~~g~~~~a~~~~~~m~ 171 (271)
|...|++++|+.++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666666666666666544
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.30 E-value=0.0014 Score=54.98 Aligned_cols=90 Identities=9% Similarity=-0.061 Sum_probs=46.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----C-CCCC-hhhH
Q 036275 82 TAYSKTGNVAKCEGVINQMHKSG---LKP----DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----S-YAAD-ISTY 147 (271)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~-~~~~ 147 (271)
..+.+.|++++|+.++++..+.. +.| ...+++.|..+|...|++++|+.++++..+. | ..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445556666666666555431 111 1234555666666666666666666554421 1 1122 3455
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhch
Q 036275 148 NILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
+.|...|...|++++|+.++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 566666666666666666655543
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.29 E-value=0.00064 Score=57.04 Aligned_cols=85 Identities=7% Similarity=-0.058 Sum_probs=64.1
Q ss_pred CCHhHHHHHHHHHHhC---CCC---C-ChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----CC-CCCC-HHHHHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKG---SYA---A-DISTYNILINIYGRGGFIEKMEGLFQSLPA-----KR-LKPD-VVTWTSRLAA 188 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~---~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~~~-~~~~~~li~~ 188 (271)
|++++|+.++++..+. -+. | ...+++.|..+|...|++++|+.++++... .| --|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6788888888776542 122 2 247889999999999999999999998653 23 1233 3578999999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 036275 189 YSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~ 207 (271)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999887653
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.20 E-value=0.0055 Score=55.39 Aligned_cols=150 Identities=11% Similarity=0.011 Sum_probs=97.8
Q ss_pred hcCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275 52 SIYFSDAHA-VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 52 ~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 130 (271)
.+++++|.+ ++.. + ++......++..+.+.|..+.|+++.+ +..+ -.......|++++|.+
T Consensus 612 ~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~~---~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 612 RGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISP---------DQDQ---KFELALKVGQLTLARD 673 (814)
T ss_dssp TTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHHH---HHHHHHHHTCHHHHHH
T ss_pred hCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCC---------Ccch---heehhhhcCCHHHHHH
Confidence 888888877 5522 1 112233778888888999999887663 2211 1344567899999988
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036275 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 210 (271)
+.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++.+.....|-
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 85433 4678899999999999999999999998753 44555555556666666665555554431
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275 211 YPDGGTAKVLISACSSEDQIEQVTTLVRTM 240 (271)
Q Consensus 211 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 240 (271)
+.....++.+.|++++|.+++.++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 122233344456666666665554
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.20 E-value=0.0084 Score=54.15 Aligned_cols=101 Identities=9% Similarity=0.134 Sum_probs=74.2
Q ss_pred HHHHhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 036275 82 TAYSKTGNVAKCEG-VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160 (271)
Q Consensus 82 ~~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 160 (271)
......+++++|.+ ++.. .++......++..+.+.|..++|.++.+.. ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence 33456788888876 4422 111333478888889999999998765321 1123445678999
Q ss_pred HHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 161 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
++|.++.+.+. +...|..+...+.+.|+++.|.++|..+.
T Consensus 669 ~~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 669 TLARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 99999987663 67899999999999999999999999875
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.17 E-value=0.012 Score=47.82 Aligned_cols=139 Identities=7% Similarity=-0.025 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHH--ccC---CHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHH----cCC----CHHHHHHHHHhch
Q 036275 106 KPDTFVINSMLNLYG--RLG---QFEKMEEVLTAMEKGSYAAD-ISTYNILINIYG----RGG----FIEKMEGLFQSLP 171 (271)
Q Consensus 106 ~~~~~~~~~li~~~~--~~g---~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~----~~g----~~~~a~~~~~~m~ 171 (271)
+.+...|...+++.. ..+ +..+|..+|++..+. .|+ ...|..+.-+|. ..+ ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 445556666665543 222 346788888888776 343 445544444332 111 1111111122111
Q ss_pred h-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275 172 A-KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL 248 (271)
Q Consensus 172 ~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 248 (271)
. .....+..+|..+...+...|++++|...+++..+.+ |+...|..+-..+...|++++|.+.+++...-++...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1 1114466777777777777788888888888888764 6777777777777888888888888888777665553
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.17 E-value=0.0016 Score=54.55 Aligned_cols=94 Identities=10% Similarity=-0.016 Sum_probs=73.4
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCCH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLG---ITP----TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-----G-LKPDT 109 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~ 109 (271)
.+.+-... .|++++|+.++++..+.. ..| ...+++.+...|...|++++|+.++++..+. | -.|+.
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 34445555 999999999999987542 222 3677899999999999999999999887643 2 23333
Q ss_pred -HHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 110 -FVINSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 110 -~~~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
.+++.|...|...|++++|+.++++..+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5689999999999999999999987754
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.10 E-value=0.0025 Score=40.93 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=44.6
Q ss_pred HHHHHHcCCCHHHHHHHHHhchhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVV-TWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 150 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
....+.+.|++++|.+.|++..+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4566778888888888888877652 22456 7788888888888888888888888775
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.09 E-value=0.0025 Score=40.96 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=25.8
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMK-SHMLLLTAYSKTGNVAKCEGVINQMHKS 103 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 103 (271)
.|++++|++.|++..+.. +.+.. .|..+..++...|++++|...|++..+.
T Consensus 13 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555554443 23344 4555555555555555555555555444
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.052 Score=39.15 Aligned_cols=131 Identities=12% Similarity=0.154 Sum_probs=90.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 036275 81 LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI 160 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 160 (271)
.....+.|+++.|.++.+++ -+...|..|.+.....|+++-|++.|..... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456778888888887665 3677888888888888998888888877643 34555667777888
Q ss_pred HHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275 161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240 (271)
Q Consensus 161 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 240 (271)
++..++-+.....| -++.....+...|+++++.++|.+ .|-.|.... .....|..+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 77777766655554 266667777788899988888754 332222111 122357778888887776
Q ss_pred H
Q 036275 241 H 241 (271)
Q Consensus 241 ~ 241 (271)
.
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 4
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.75 E-value=0.022 Score=37.22 Aligned_cols=67 Identities=10% Similarity=-0.039 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
.++..+..+...+.+.|+++.|...|+...+.- ..+....+..+..++.+.|+++.|..++++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355556666677777777777777776655421 1224455666666666666666666666666654
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.68 E-value=0.038 Score=35.35 Aligned_cols=67 Identities=7% Similarity=-0.083 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 71 TPTMKSHMLLLTAYSKTGN---VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 71 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
+.++..+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|+..|+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455555555555543333 45666666666554321 3444555555566666666666666666554
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.12 Score=37.29 Aligned_cols=124 Identities=10% Similarity=0.056 Sum_probs=93.5
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 131 (271)
.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.++..++
T Consensus 18 lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 18 YGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp TTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 89999999998766 3678999999999999999999999988763 45666677788998888777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 205 (271)
-+.....| -++.....+...|+++++.++|.+.-.. ..........|..+.|.++..++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~---------~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSL---------PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCH---------HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCCh---------HHHHHHHHHcCcHHHHHHHHHHh
Confidence 66666554 2566677778889999999999765431 12222223356777788887665
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.52 E-value=0.014 Score=41.11 Aligned_cols=81 Identities=11% Similarity=0.106 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHhHHHH
Q 036275 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG---NVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 130 (271)
..+.+-|.+..+.| +++..+...+.-++++.+ +.++++.++++..+.. .| ....+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34444455444444 345555555555666655 4446666666655543 12 22333344445556666666666
Q ss_pred HHHHHHhC
Q 036275 131 VLTAMEKG 138 (271)
Q Consensus 131 ~~~~m~~~ 138 (271)
+++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666554
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.40 E-value=0.026 Score=36.11 Aligned_cols=65 Identities=6% Similarity=-0.082 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHccCC---HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 108 DTFVINSMLNLYGRLGQ---FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 108 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
+...+..+..++...++ .++|..++++..+.. +.++.....+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433322 355555555555542 233445555555555555555555555555543
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.38 E-value=0.048 Score=38.32 Aligned_cols=78 Identities=17% Similarity=0.050 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCC---CHHHHHHHHHhchhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275 128 MEEVLTAMEKGSYAADISTYNILINIYGRGG---FIEKMEGLFQSLPAKRLKP--DVVTWTSRLAAYSRKKLYRRCLEIF 202 (271)
Q Consensus 128 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 202 (271)
+.+-|.+..+.| +++..+...+..++++++ +.+++..+|++..+.. .| ....+..+.-+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333343333333 244444444555555554 3335555555544432 12 1233444444445555555555555
Q ss_pred HHHHH
Q 036275 203 EEMID 207 (271)
Q Consensus 203 ~~m~~ 207 (271)
+.+++
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.17 E-value=0.079 Score=34.45 Aligned_cols=67 Identities=7% Similarity=-0.091 Sum_probs=48.5
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHhchhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275 142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAK------RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA 208 (271)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (271)
.+...+-.|...+.+.|+++.|...|+...+. +-.+....+..+..++.+.|++++|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45666677888888888888888888876542 11234567777888888888888888888887764
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.76 E-value=0.1 Score=40.87 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHh
Q 036275 56 SDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKT-----GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL-GQFE 126 (271)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~ 126 (271)
..|...+++..+.+ |+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 34444444444432 22 33455555555552 55555555555555542211234444444444442 5555
Q ss_pred HHHHHHHHHHhC
Q 036275 127 KMEEVLTAMEKG 138 (271)
Q Consensus 127 ~a~~~~~~m~~~ 138 (271)
++.+.+++....
T Consensus 258 ~a~~~L~kAL~a 269 (301)
T 3u64_A 258 GFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC
Confidence 555555555544
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.65 E-value=0.12 Score=40.47 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc-----CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-CCHH
Q 036275 91 AKCEGVINQMHKSGLKPD---TFVINSMLNLYGRL-----GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIE 161 (271)
Q Consensus 91 ~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~ 161 (271)
..|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++..+.+-.-+..++......+++. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4566666666665 455 34677888888884 88888888888888763111377777788888884 8888
Q ss_pred HHHHHHHhchhCCCC--CCHHHHH
Q 036275 162 KMEGLFQSLPAKRLK--PDVVTWT 183 (271)
Q Consensus 162 ~a~~~~~~m~~~g~~--~~~~~~~ 183 (271)
++.+.+++....... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 888888888876555 5544333
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.62 E-value=0.32 Score=33.40 Aligned_cols=141 Identities=12% Similarity=-0.021 Sum_probs=88.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 036275 85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164 (271)
Q Consensus 85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 164 (271)
.-.|..++..++..+...+ .+..-||-+|--....-+=+-..++++.+-+. .|.. .+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 3456677777777666654 24445555555555555555566666555432 2222 233444444
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 165 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
..+-.+-. +....+..+......|.-+...+++..+... .+|+......+..+|.+.|+..++.+++++.-+.|
T Consensus 82 ~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 43333321 4455677778888888888888888886543 36788888888888888888888888888887777
Q ss_pred cch
Q 036275 245 KTA 247 (271)
Q Consensus 245 ~~~ 247 (271)
...
T Consensus 156 ~kE 158 (172)
T 1wy6_A 156 EKE 158 (172)
T ss_dssp CHH
T ss_pred hHH
Confidence 543
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.56 E-value=0.34 Score=33.30 Aligned_cols=144 Identities=11% Similarity=0.028 Sum_probs=99.3
Q ss_pred HHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 46 LFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 46 ~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
.|+.+- .|.+++-.++..+..+.. +..-||-+|--....-+-+-.+++++.+-+. -|. ..
T Consensus 10 kLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~ 73 (172)
T 1wy6_A 10 KLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DK 73 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GG
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------Hh
Confidence 345554 899999999999887753 6667777777766666666666666665432 121 23
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI 201 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (271)
+|++..+...+-.+ ..+...++..++.....|..++-.++...+.. ..+|++...-.+..+|.+.|+..+|.++
T Consensus 74 C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 45555555554333 23455567778888888888888888888543 2367788888888888888888888888
Q ss_pred HHHHHHCCCC
Q 036275 202 FEEMIDAGCY 211 (271)
Q Consensus 202 ~~~m~~~~~~ 211 (271)
+.+.-+.|++
T Consensus 148 l~~AC~kG~k 157 (172)
T 1wy6_A 148 LIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhhhH
Confidence 8888888753
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.00 E-value=0.18 Score=35.26 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH-HHHHHHHH------HHccCCHhHHHHHHHHHHhCC
Q 036275 73 TMKSHMLLLTAYSKTGNV------AKCEGVINQMHKSGLKPDTF-VINSMLNL------YGRLGQFEKMEEVLTAMEKGS 139 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~-~~~~li~~------~~~~g~~~~a~~~~~~m~~~~ 139 (271)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...|.. +...++.++|.++|+.+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555555 5666666665553 344321 11111111 123367777777777775542
Q ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275 140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA 187 (271)
Q Consensus 140 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 187 (271)
-.. ...|-.....-.++|++.+|.+++......+.+| .......|+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 122 6666666666677777777777777777665443 333444443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.80 E-value=0.17 Score=34.18 Aligned_cols=81 Identities=15% Similarity=0.056 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH---HHHHHHhchhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 036275 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK---MEGLFQSLPAKRLKP--DVVTWTSRLAAYSRKKLYRRCLE 200 (271)
Q Consensus 126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~ 200 (271)
..+.+-+......| .++..+--.+..++.++.+... ++.+++++...+ .| .......|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444333333 2444444445555555555444 555555555442 12 12233444445556666666666
Q ss_pred HHHHHHHC
Q 036275 201 IFEEMIDA 208 (271)
Q Consensus 201 ~~~~m~~~ 208 (271)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665553
No 233
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.57 E-value=0.36 Score=31.10 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=22.3
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
+..+-+..+....+.|++....+.+++|.+.+++..|.++|+-.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555554444
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.52 E-value=0.19 Score=41.36 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 036275 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-----DAGCYPDGGTAKVL 220 (271)
Q Consensus 147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~~l 220 (271)
...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|.+.|+... +.|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3456677777788887777777766542 3466677888888888888888877777654 35777777664433
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.50 E-value=1.8 Score=36.23 Aligned_cols=190 Identities=8% Similarity=0.065 Sum_probs=123.0
Q ss_pred hcCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hcc
Q 036275 52 SIYFSDAHAVFEEMKRL-----GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY----GRL 122 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~ 122 (271)
.|+++.|++.+..+.+. +.+-+......++..|...|+++...+.+.-+......+ ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 67888998888777643 345567778889999999999999988877665543232 22223344333 233
Q ss_pred CCHhHH--HHHHHHHH---hCCCCC---ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC--CCCCC---HHHHHHHHHHH
Q 036275 123 GQFEKM--EEVLTAME---KGSYAA---DISTYNILINIYGRGGFIEKMEGLFQSLPAK--RLKPD---VVTWTSRLAAY 189 (271)
Q Consensus 123 g~~~~a--~~~~~~m~---~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~ 189 (271)
...+.. ..+.+... +..+.. .......|...+-..|++.+|.+++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 333322 22222111 111111 2233467888999999999999999997642 22111 24677778899
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 190 SRKKLYRRCLEIFEEMID----AGCYPDG--GTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
...+++..|..+++.... ....|+. ..+...+..+...+++.+|.+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999988642 2222322 3456677778888999999988888754
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.46 E-value=0.45 Score=32.17 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 72 PTMKSHMLLLTAYSKTGNVAK---CEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
++..+-..+.-++.+.++... ++.+++.+.+.+ .| ...-.-.|.-++.+.|++++|.++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444444444444333 445555444432 11 111222233344455555555555555544
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.38 E-value=0.21 Score=41.12 Aligned_cols=74 Identities=5% Similarity=-0.045 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh-----CCCCCChhhHHHH
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK-----GSYAADISTYNIL 150 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~l 150 (271)
....++..+...|+.+++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+...+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45567788888899999998888887664 45777888999999999999999988887653 4888887765433
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.37 E-value=0.31 Score=34.04 Aligned_cols=58 Identities=7% Similarity=-0.051 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHH
Q 036275 193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY 251 (271)
Q Consensus 193 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 251 (271)
+|.++|.++|+.++...-.. ...|....+--.++|++++|.+++.+....++.+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 56666666766665432122 44555555555667777777777777666655554443
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.07 E-value=0.57 Score=30.16 Aligned_cols=64 Identities=8% Similarity=0.194 Sum_probs=51.3
Q ss_pred HHHHHHHHHH-hcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 181 TWTSRLAAYS-RKK-LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 181 ~~~~li~~~~-~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
-|..--..|. +.. |.-++.+-++.+....+.|+..+..+.+++|.+.+|+..|.++++-++.+.
T Consensus 10 eF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 10 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3433333333 444 566888888999999999999999999999999999999999999987544
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.43 Score=42.80 Aligned_cols=118 Identities=12% Similarity=0.039 Sum_probs=75.4
Q ss_pred hcC-HHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCC-hHHHHHHHHHHHHC------CCC-CCH----------HH
Q 036275 52 SIY-FSDAHAVFEEMKRLGITPTMKSH-MLLLTAYSKTGN-VAKCEGVINQMHKS------GLK-PDT----------FV 111 (271)
Q Consensus 52 ~g~-~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~-~~~----------~~ 111 (271)
.++ ++.|..+|+++.+.. +.....+ ..++..+...++ --+|.+++.+..+. ... .+. ..
T Consensus 261 t~~~~~~a~~~le~L~~~~-p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKD-PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 555 688999999998875 2222222 233333333322 22345555443321 111 111 11
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP 171 (271)
Q Consensus 112 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 171 (271)
.+.=.+.+...|+++.|+++-++....- |.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 2222445667899999999999998862 4457899999999999999999999999875
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.35 Score=43.31 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCC-HhHHHHHHHHHHhC------CCCC-Ch--
Q 036275 78 MLLLTAYSKTGN-VAKCEGVINQMHKSGLKPDTFV--INSMLNLYGRLGQ-FEKMEEVLTAMEKG------SYAA-DI-- 144 (271)
Q Consensus 78 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~-~~~a~~~~~~m~~~------~~~~-~~-- 144 (271)
..++..+.-.++ .+.|..+++++.+. .|...+ ...++......++ --+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555566 58899999999887 343333 3334444433332 22344554443321 1111 11
Q ss_pred --------hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275 145 --------STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 145 --------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 205 (271)
.....-.+.+...|+++-|+++-++.... .|+ -.+|..|...|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12223345677899999999999998876 455 689999999999999999999998875
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.98 E-value=0.84 Score=31.11 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=31.9
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036275 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221 (271)
Q Consensus 162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 221 (271)
+..+-+..+....+.|++......+++|.+.+|+..|.++|+-.+.+ +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444455555555666666666666666666666666666555443 223344454444
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.93 E-value=1.5 Score=29.91 Aligned_cols=51 Identities=6% Similarity=0.132 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM 244 (271)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 244 (271)
|.-+..+-++.+....+.|+..+....+++|.+.+|+..|.++++-++.+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 556778888888889999999999999999999999999999999987654
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.85 E-value=6.4 Score=32.92 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=98.8
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-CCCCChhhHHHHHHHH----HcC
Q 036275 88 GNVAKCEGVINQMHK-----SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIY----GRG 157 (271)
Q Consensus 88 ~~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~----~~~ 157 (271)
++++.|++.+-.+.+ .....+......++..|...|+++...+.+.-+.+. |.. ......+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 567778777755543 234556777888999999999999998887766543 322 22233444333 223
Q ss_pred CC--HHHHHHHHHhchh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHH
Q 036275 158 GF--IEKMEGLFQSLPA--KR-LKP---DVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPD---GGTAKVLISAC 224 (271)
Q Consensus 158 g~--~~~a~~~~~~m~~--~g-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~---~~~~~~l~~~~ 224 (271)
.. .+.-..+.+.... .| +-. .......|...+...|++.+|..++..+.. .|.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2233334433321 12 222 123456778889999999999999999763 333222 24667778889
Q ss_pred hccCcHHHHHHHHHHHHh
Q 036275 225 SSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 225 ~~~g~~~~a~~~~~~~~~ 242 (271)
...+++.+|..+++++..
T Consensus 188 l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999998753
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.33 E-value=2.4 Score=27.21 Aligned_cols=85 Identities=13% Similarity=0.019 Sum_probs=40.8
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 203 (271)
..++|..+-+.+...+- ...+--+-+..+...|++++|..+.+.+- .||...|-.|-.. +.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 45566666555555432 22222233344556666666666655543 4555555444332 4455555555554
Q ss_pred HHHHCCCCCCHHHH
Q 036275 204 EMIDAGCYPDGGTA 217 (271)
Q Consensus 204 ~m~~~~~~p~~~~~ 217 (271)
.+...| .|....|
T Consensus 94 ~la~sg-~p~~q~F 106 (116)
T 2p58_C 94 RLARSQ-DPRIQTF 106 (116)
T ss_dssp HHTTCC-CHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 554444 3333333
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.28 E-value=2.3 Score=27.25 Aligned_cols=85 Identities=13% Similarity=0.032 Sum_probs=40.3
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE 203 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 203 (271)
..++|..+-+.+...+- ...+--+-+..+...|++++|..+.+.+- .||...|-.|-. -+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45556555555555432 22222233344555666666655555443 355554444432 24455555555554
Q ss_pred HHHHCCCCCCHHHH
Q 036275 204 EMIDAGCYPDGGTA 217 (271)
Q Consensus 204 ~m~~~~~~p~~~~~ 217 (271)
.+...| .|....|
T Consensus 93 ~la~sg-~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSS-DPALADF 105 (115)
T ss_dssp HHHTCS-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 555444 3333333
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.17 E-value=6.5 Score=37.29 Aligned_cols=143 Identities=10% Similarity=0.043 Sum_probs=89.3
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CC---------------
Q 036275 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK----RL--------------- 175 (271)
Q Consensus 115 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--------------- 175 (271)
++..+...+..+.+.++.... +.+...--.+..+|...|++++|.+.|++.... ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444555566666555543322 234444456778888999999999999876321 00
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHhcc--cc
Q 036275 176 ---KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG----GTAKVLISACSSEDQIEQVTTLVRTMHKDM--KT 246 (271)
Q Consensus 176 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~ 246 (271)
..-..-|..++..+.+.+.++.+.++-+...+..-.-+. ..|..+++++...|++++|...+-.+.... ..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 011234677888888889988888877766552211121 257888899999999999988887775433 22
Q ss_pred hhHHHHHHHhhccccc
Q 036275 247 ALPIYFNLYGEKGVAR 262 (271)
Q Consensus 247 ~~~~~~~~~~~~G~~~ 262 (271)
....++..+++.|..+
T Consensus 973 cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhCCChh
Confidence 3344555555555443
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.05 E-value=16 Score=34.72 Aligned_cols=121 Identities=8% Similarity=-0.028 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C------------------CCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----G------------------LKPDTFVINSMLNLYGRLGQFEKMEE 130 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~------------------~~~~~~~~~~li~~~~~~g~~~~a~~ 130 (271)
++..--.+..++...|++++|.+.|++.... . ...-..-|.-++..+-+.+..+.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333345566667777777777777654210 0 00011234555666666666666666
Q ss_pred HHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH
Q 036275 131 VLTAMEKGSYAAD----ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY 195 (271)
Q Consensus 131 ~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 195 (271)
+-....+..-+.+ ...|..+...+...|++++|...+-.+..... -......|+...+..|..
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 5554443211111 12455666666666666666666665554422 234555555555544443
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.00 E-value=8.5 Score=31.61 Aligned_cols=56 Identities=16% Similarity=0.065 Sum_probs=24.2
Q ss_pred HHHHHHcCCCHHHHHHHHHhchhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPD-----VVTWTSRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 150 li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m 205 (271)
++..|...|++.+|.+++.++...=-+.| ...|-.-++.|...+++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44455555555555555444433100001 123333344455555555555555443
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.20 E-value=7.6 Score=32.29 Aligned_cols=98 Identities=11% Similarity=-0.021 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC---CCCCChhh--H
Q 036275 75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG---SYAADIST--Y 147 (271)
Q Consensus 75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~--~ 147 (271)
.+...+...|.+.|+++.|.+.|.++..... .--...+-.+++.+...+++..+...+.+.... +-.++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4567788999999999999999999987532 333466778899999999999999998887542 21222211 1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhchh
Q 036275 148 NILINIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~~m~~ 172 (271)
..-...+...+++.+|-+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112234567888888888877543
No 251
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.12 E-value=0.00018 Score=60.25 Aligned_cols=178 Identities=11% Similarity=0.081 Sum_probs=113.5
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..|-.++ .+++.+|++.|- +. -|+..|..+|.+..+.|.+++-+.++...++..-.|.+ =+.|+-+|++
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk 128 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAK 128 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHT
T ss_pred HHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHh
Confidence 77788777 666666665442 11 26667888888888888888888887666655334433 3478888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC--------------------CCCHHH
Q 036275 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL--------------------KPDVVT 181 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--------------------~~~~~~ 181 (271)
.++..+.++++. .|+..-...+.+-|...|.++.|.-+|..+..-.- .-++.|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888766544431 35666667788888888888888888877653210 124456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
|..+-.+|...+++.-|...--.++- .||. ...++..|...|.+++...+++.-.
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 77777777777776665554433331 2221 3345666677777777666666544
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.98 E-value=5.2 Score=33.29 Aligned_cols=97 Identities=8% Similarity=0.006 Sum_probs=69.0
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCC--CChhhHHHHHHHHHcCCCHHHHHHHHHhchh---CCCCCCHHHH--H
Q 036275 111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYA--ADISTYNILINIYGRGGFIEKMEGLFQSLPA---KRLKPDVVTW--T 183 (271)
Q Consensus 111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~--~ 183 (271)
+...+...|.+.|++++|.+.+.++...... .-...+-.+|+.+...+++..+...+.++.. .+..|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667889999999999999999999865322 3356778889999999999999999988753 2322332211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 184 SRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 184 ~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
.-...+...+++.+|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223467889999888877654
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.43 E-value=6 Score=28.05 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 148 NILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
--+..+|.+.|++++|+.+++.+..+
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 34666677777777777777776554
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.89 E-value=8 Score=26.26 Aligned_cols=26 Identities=4% Similarity=-0.008 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
+..|.-++.+.|++++|.+..+.+++
T Consensus 81 LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 81 LYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444444455555555555554444
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.50 E-value=8.4 Score=26.17 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 72 PTMKSHMLLLTAYSKTGNV---AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
|+..+-....-++.+..+. .+++.+++++.+.+..-.....-.|.-++.+.|+++.|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444443322 23444444444432111122233334444455555555555555444
No 256
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=82.95 E-value=17 Score=29.36 Aligned_cols=74 Identities=9% Similarity=0.049 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhcccchhHHHHHHH
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED--QIEQVTTLVRTMHKDMKTALPIYFNLY 255 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~ 255 (271)
....++.-|...|+.++|.+.++++....+. ...+...+..+.-+.+ ..+.+.+++..+.+.+..+...+...+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4688888899999999999999988642221 2334445555555543 345678888888877766665555444
No 257
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=81.56 E-value=0.15 Score=43.15 Aligned_cols=210 Identities=11% Similarity=0.051 Sum_probs=139.3
Q ss_pred chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275 44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121 (271)
Q Consensus 44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 121 (271)
|..+|.+. .|.+++-++.+.-.++.. -++..=+.|+-+|++.++..+..+++. .|+..-...+.+-|..
T Consensus 86 y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYD 156 (624)
T ss_dssp SSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHH
Confidence 99999999 999999999887555542 244455689999999998776544331 3566666788999999
Q ss_pred cCCHhHHHHHHHHHHhCC--------------------CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH
Q 036275 122 LGQFEKMEEVLTAMEKGS--------------------YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181 (271)
Q Consensus 122 ~g~~~~a~~~~~~m~~~~--------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 181 (271)
.|.++.|.-+|..+.... -.-++.||..+-.+|...+++.-|...--.+.-. |+ -
T Consensus 157 e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--e 231 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--E 231 (624)
T ss_dssp SCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--C
T ss_pred ccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--H
Confidence 999999998888774311 1347889999999999999887665443333221 11 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh-----------cccchhHH
Q 036275 182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-----------DMKTALPI 250 (271)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~ 250 (271)
...++..|-..|.+++...+++...... +....+|+-|.-.|++- .+++..+.++-... .....|..
T Consensus 232 L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~E 309 (624)
T 3lvg_A 232 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 309 (624)
T ss_dssp CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHH
Confidence 3345566677788888777777766432 45667777777666664 45555554443221 11223555
Q ss_pred HHHHHhhccccccchhhhh
Q 036275 251 YFNLYGEKGVARSNLGQYI 269 (271)
Q Consensus 251 ~~~~~~~~G~~~~a~~~~~ 269 (271)
++-+|.+-..+++|...++
T Consensus 310 lvfLY~~ydE~DnA~ltMi 328 (624)
T 3lvg_A 310 LVFLYDKYEEYDNAIITMM 328 (624)
T ss_dssp HHHHHHHHTCHHHHHHTTT
T ss_pred HHHHHhcchhHHHHHHHHH
Confidence 6666776666666665544
No 258
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=81.28 E-value=3.7 Score=28.69 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=12.9
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHH
Q 036275 112 INSMLNLYGRLGQFEKMEEVLTAM 135 (271)
Q Consensus 112 ~~~li~~~~~~g~~~~a~~~~~~m 135 (271)
.+.++.-|...|+.++|...++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 344555555555555555555555
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.18 E-value=5 Score=30.98 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=30.7
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS 103 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 103 (271)
.|++++|++....-.+.. |-|...-..++..+|-.|+++.|..-++...+.
T Consensus 10 ~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 566666666665555554 456666666666666666666666665555544
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.93 E-value=4.2 Score=31.38 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=31.0
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 119 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
..+.|+++++++....-.+.. |.|...-..++..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445566666666555555442 445555556666666666666666666555443
No 261
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=80.22 E-value=10 Score=25.52 Aligned_cols=70 Identities=10% Similarity=0.205 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL--YRRCLEIFEEMIDAGCYPDGGT 216 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 216 (271)
....++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4566778888888888888888887532111 12233333344443322 3556777777776665544433
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.97 E-value=14 Score=26.24 Aligned_cols=92 Identities=10% Similarity=0.018 Sum_probs=63.5
Q ss_pred HHHHH-hcCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------------
Q 036275 47 FVFIF-SIYFSDAHAVFEEMKRL-GITPT-------MKSHMLLLTAYSKTGNVAKCEGVINQMHKSG------------- 104 (271)
Q Consensus 47 ll~~~-~g~~~~A~~~~~~~~~~-~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------- 104 (271)
+=..+ .|.++.|+-+.+.+... +..|+ ..++..+.+++...|++..|...|++..+..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 33445 89999999888876543 12334 2356678888999999999999998853210
Q ss_pred -----------CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 105 -----------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 105 -----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
...+...---+-.+|.+.+++++|+.+++.+...
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111233334778889999999999998876544
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.72 E-value=15 Score=25.34 Aligned_cols=21 Identities=10% Similarity=-0.164 Sum_probs=8.6
Q ss_pred HHHHcCCCHHHHHHHHHhchh
Q 036275 152 NIYGRGGFIEKMEGLFQSLPA 172 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~ 172 (271)
-++.+.|++++|.+..+.+.+
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444444333
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.28 E-value=19 Score=26.40 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=30.8
Q ss_pred CHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC
Q 036275 124 QFEKMEEVLTAMEKGSYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177 (271)
Q Consensus 124 ~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 177 (271)
+..++.++|..|...|+-.. ..-|......+-..|++.+|.++|+.-.+.+-+|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34566666666665554433 3445555555666666666666666655555455
No 265
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=76.13 E-value=15 Score=25.56 Aligned_cols=73 Identities=10% Similarity=0.208 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL--YRRCLEIFEEMIDAGCYPDGGTAK 218 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~ 218 (271)
...+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...|+-+......
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~ 84 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 84 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 34567888888889999999999887532111 12233333444444222 455777777777776554444433
No 266
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=75.65 E-value=28 Score=27.47 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc--HHHHHHHHHHHHhcccchhHHHHHHH
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ--IEQVTTLVRTMHKDMKTALPIYFNLY 255 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~ 255 (271)
....++.-|...|+.++|.+.++++....+. ...+...+..+.-+.++ .+.+.+++..+.+.+..+...+...+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4667888899999999999999998632211 23344455556655433 56677888888777766655554443
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.55 E-value=13 Score=23.81 Aligned_cols=90 Identities=11% Similarity=-0.004 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036275 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238 (271)
Q Consensus 159 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 238 (271)
..++|.-+-+-+...+. ....--+-+..+...|++++|..+.+.+ ..||...|..|.. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45555555555554432 1111112223445667777766654432 2566666655543 35566666666666
Q ss_pred HHHhcccchhHHHHHHHh
Q 036275 239 TMHKDMKTALPIYFNLYG 256 (271)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ 256 (271)
++..++.+....+...+.
T Consensus 93 ~la~sg~p~~q~Fa~g~r 110 (115)
T 2uwj_G 93 GLGGSSDPALADFAAGMR 110 (115)
T ss_dssp HHHTCSSHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 666666666555554443
No 268
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=74.88 E-value=16 Score=27.52 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=16.7
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 142 ADISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
++.......+..+.+.|+.++|.++|-+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34444455556666666666666666543
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.68 E-value=14 Score=23.72 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036275 159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238 (271)
Q Consensus 159 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 238 (271)
..++|.-+-+-+...+. ....--+-+..+...|++++|..+.+.+ ..||...|..|.. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45555555555554432 1111112223445667777776655433 2566666655543 35566666666666
Q ss_pred HHHhcccchhHHHHHHHh
Q 036275 239 TMHKDMKTALPIYFNLYG 256 (271)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ 256 (271)
++..++.+....+...+.
T Consensus 94 ~la~sg~p~~q~Fa~g~r 111 (116)
T 2p58_C 94 RLARSQDPRIQTFVNGMR 111 (116)
T ss_dssp HHTTCCCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 666666665555554443
No 270
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=73.82 E-value=3.5 Score=29.57 Aligned_cols=161 Identities=9% Similarity=0.006 Sum_probs=74.0
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV--INSMLNLYG 120 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~ 120 (271)
.+.|..+. .|+.+.+..++..-...--..+..-++.| ...+..|+.+- .+.+.+.|..++... -.+.+...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDIEI----AKALIDRGADINLQNSISDSPYLYAG 80 (201)
T ss_dssp TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 56677777 88888777776532100001122223333 33445565443 444445555443221 122344455
Q ss_pred ccCCHhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC-HH
Q 036275 121 RLGQFEKMEEVLTAMEKGSYAA---DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL-YR 196 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~ 196 (271)
..|+.+-+..+++. .+..+ +.... +.+...++.|+.+-+..+++.-...--..+..-.+.+..+. ..++ ..
T Consensus 81 ~~~~~~~~~~Ll~~---~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~ 155 (201)
T 3hra_A 81 AQGRTEILAYMLKH---ATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQ 155 (201)
T ss_dssp HTTCHHHHHHHHHH---SCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSH
T ss_pred HcCCHHHHHHHHhc---cCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-Hhccchh
Confidence 66777655555433 22111 11111 23444556677766666665431110011222233444443 3333 33
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 036275 197 RCLEIFEEMIDAGCYPDG 214 (271)
Q Consensus 197 ~a~~~~~~m~~~~~~p~~ 214 (271)
.-.++.+.+.+.|..++.
T Consensus 156 ~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 156 LYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHHHHTTCCTTC
T ss_pred hHHHHHHHHHHCCCCCCc
Confidence 335566666677666553
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.98 E-value=20 Score=24.66 Aligned_cols=72 Identities=10% Similarity=0.060 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 036275 70 ITPTMKSHMLLLTAYSKTGN---VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143 (271)
Q Consensus 70 ~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 143 (271)
-.|+..+-....-++.++.+ ..+++.+++++.+.+..-...-.-.|.-++.+.|++++|.++.+.+.+. .|+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 35788877777778887765 4578888888887643323344455667888999999999999999986 454
No 272
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=72.90 E-value=20 Score=24.55 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=27.7
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 65 MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 65 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
+.+.|+.++..=. .++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3445555444322 334444444444555555555555544445554444444444444
No 273
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=72.45 E-value=1.6 Score=33.12 Aligned_cols=193 Identities=9% Similarity=-0.028 Sum_probs=97.0
Q ss_pred hHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--hcCChHHHHHHHHHHHHCC---------C
Q 036275 45 NLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKS-------HMLLLTAYS--KTGNVAKCEGVINQMHKSG---------L 105 (271)
Q Consensus 45 ~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~li~~~~--~~~~~~~a~~~~~~m~~~~---------~ 105 (271)
+.|..+. .|+.+....+++.+.+.+..++... .+.|..+.. +.|+.+-+..+++.-...+ +
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 4556666 8999988888888877776655333 344544442 5677777766666543311 1
Q ss_pred C-CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhh----------------HHHHHHHHHcCCCHHHHHHHHH
Q 036275 106 K-PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST----------------YNILINIYGRGGFIEKMEGLFQ 168 (271)
Q Consensus 106 ~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----------------~~~li~~~~~~g~~~~a~~~~~ 168 (271)
. .|..-. +.+...+..|+.+-+.. +.+.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 87 ~~~d~~g~-t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 87 RDVYYRGQ-TALHIAIERRCKHYVEL----LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CCSSEESB-CHHHHHHHTTCHHHHHH----HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCC-CHHHHHHHcCCHHHHHH----HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1 010112 23444556777664443 444555544332 2344555566788766666655
Q ss_pred hchhCCCCC---CHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHhccCcHH
Q 036275 169 SLPAKRLKP---DVVTWTSRLAAYSRKKL----YRRCLEIFEEMIDAGCYP----------DGGTAKVLISACSSEDQIE 231 (271)
Q Consensus 169 ~m~~~g~~~---~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~~~~p----------~~~~~~~l~~~~~~~g~~~ 231 (271)
.- ..|..+ |..-.+.|..+...... .+...++++.+.+.|..+ |..-.+. +...+..|+.+
T Consensus 162 ~~-~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp-L~~A~~~g~~~ 239 (260)
T 3jxi_A 162 NG-HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP-LMMAAKTGKIG 239 (260)
T ss_dssp CS-SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH-HHHHHHTTCHH
T ss_pred cc-ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH-HHHHHHcCCHH
Confidence 21 023222 22233444444432221 112234444444443222 2222223 33345668887
Q ss_pred HHHHHHHHHHhcc
Q 036275 232 QVTTLVRTMHKDM 244 (271)
Q Consensus 232 ~a~~~~~~~~~~~ 244 (271)
-+..++++-....
T Consensus 240 ~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 240 IFQHIIRREIADA 252 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcc
Confidence 7777777655443
No 274
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=72.37 E-value=20 Score=24.50 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=27.3
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 135 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
+.+.|+.++..= ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 444555444332 2333444444444555555555555544445555444444444444
No 275
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=72.13 E-value=18 Score=24.39 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=31.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275 65 MKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124 (271)
Q Consensus 65 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 124 (271)
+.+.|.+++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4455655554433 3444444444 455666666666666555555554444555555443
No 276
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=71.70 E-value=27 Score=25.55 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=43.2
Q ss_pred HHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-----hHHHHHHHHHHhCCCCCChhhH
Q 036275 79 LLLTAYSK---TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF-----EKMEEVLTAMEKGSYAADISTY 147 (271)
Q Consensus 79 ~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~~~~~~~ 147 (271)
-+|+++.+ ..+.+.|+-++-+|++.| .|.-..-..++-+.-..|.- ..|...++.....|.+.-....
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~L 91 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPL 91 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 45566554 477888888888888888 76666666666666666642 2344555555666765443333
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.02 E-value=31 Score=25.99 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=55.1
Q ss_pred HHHH--hcCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275 48 VFIF--SIYFSDAHAVFEEMKRL--GITP----TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY 119 (271)
Q Consensus 48 l~~~--~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 119 (271)
++.+ ..++++|++++++..+. ++++ +...-...+..-...+.-..+..+.+++. . .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHHH
Confidence 4455 89999999999887653 3332 11222333444444444455555556663 3 45666677788999
Q ss_pred HccCCHhHHHHHHHHHH
Q 036275 120 GRLGQFEKMEEVLTAME 136 (271)
Q Consensus 120 ~~~g~~~~a~~~~~~m~ 136 (271)
.+.|+.++|.++|=+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 99999999999886554
No 278
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=70.80 E-value=13 Score=23.62 Aligned_cols=61 Identities=11% Similarity=0.226 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccc
Q 036275 200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVAR 262 (271)
Q Consensus 200 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 262 (271)
.+++.+.+.|+ .+......+- +.......++|.+++..+.+.|+..+..+++++.+.|+.+
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~-~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQ-RAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHH-TSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHH-hccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 36667777763 3554444432 2112256778888888888888888888888777666543
No 279
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=70.23 E-value=20 Score=24.74 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=18.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333333344444555555544443344444333334444333
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.24 E-value=31 Score=25.28 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 036275 157 GGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG 214 (271)
Q Consensus 157 ~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 214 (271)
.++..++.++|..|...|+-.. ...|......+-..|++.+|.++|+...+.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4557788888888888776544 445677777778889999999999888888777743
No 281
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=69.22 E-value=21 Score=24.63 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=29.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275 65 MKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ 124 (271)
Q Consensus 65 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 124 (271)
+.+.|+.++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 4445555554333 3334444443 455566666666655555555554444555555543
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.01 E-value=14 Score=27.16 Aligned_cols=181 Identities=13% Similarity=0.103 Sum_probs=89.8
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKS--HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV--INSMLNL 118 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~ 118 (271)
++.|..+. .|+.+.+..+++.+.+.+..++... -...+...+..|+.+ +++.+.+.|..++... -.+.+..
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHH
Confidence 67777777 9999988888887777665443221 112344445566654 3444555665543221 1234455
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH---HHHHHHHHHHhc
Q 036275 119 YGRLGQFEKMEEVLTAMEKGSYAA---DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV---TWTSRLAAYSRK 192 (271)
Q Consensus 119 ~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~ 192 (271)
.+..|+.+-+..+++.....++.+ +.... +.+...+..|+.+-+..+++. |..++.. .-...+...+..
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQETVQLLLER----GADIDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCC-cHHHHHHHcCCHHHHHHHHHc----CCCcccccccCCCcHHHHHHHc
Confidence 567788776666655543221122 22222 233444456666555555543 3332211 112233444566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHH
Q 036275 193 KLYRRCLEIFEEMIDAGCYPDGG---TAKVLISACSSEDQIEQVTTLVR 238 (271)
Q Consensus 193 g~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~ 238 (271)
|+.+- ++.+.+.|..++.. -.+. +......|+.+-+..+++
T Consensus 161 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 161 NSLSM----VQLLLQHGANVNAQMYSGSSA-LHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp TCHHH----HHHHHHTTCCTTCBCTTSCBH-HHHHHHHTCHHHHHHHHH
T ss_pred CCHHH----HHHHHHcCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHHh
Confidence 77654 44444555554321 1122 233344566655444443
No 283
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=67.98 E-value=23 Score=24.92 Aligned_cols=60 Identities=13% Similarity=-0.045 Sum_probs=39.0
Q ss_pred CchHHHHHH-hcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-HH-----HhcCChHHHHHHHHHHHH
Q 036275 43 TPNLFVFIF-SIYFSDAHAVFEEMKRLGITP--TMKSHMLLLT-AY-----SKTGNVAKCEGVINQMHK 102 (271)
Q Consensus 43 ~y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~-~~-----~~~~~~~~a~~~~~~m~~ 102 (271)
.|...+..| .|++-+|.++|+..=+..-.+ ....|..||. .. .+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366666667 888888888888875543344 4556666666 22 245777777777766654
No 284
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=67.94 E-value=21 Score=24.07 Aligned_cols=58 Identities=9% Similarity=0.122 Sum_probs=24.5
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCC-CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 135 MEKGSYAADISTYNILINIYGRGG-FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 135 m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
+.+.|+.++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444332 22333444333 44445555555554444444444444444444333
No 285
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=67.08 E-value=19 Score=24.70 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=29.3
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 65 MKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 65 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
+.+.|++++..=. .++..+...+ .-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 10 L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555554432 3344444444 5566666666666655555555444445555544
No 286
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=66.83 E-value=19 Score=24.90 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=25.9
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 135 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
+.+.|+.++..= ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444454443322 2334444444445555555555555444444444444444444443
No 287
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=65.66 E-value=15 Score=23.19 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=18.8
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLT 82 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 82 (271)
|..-+..+ .|++-+|.++++..=...-.+....|..+|.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq 44 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVIL 44 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 44445555 6666666666655543331223344444443
No 288
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=65.21 E-value=16 Score=25.08 Aligned_cols=57 Identities=5% Similarity=0.049 Sum_probs=25.7
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 135 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
+.+.|+.++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 444455444332 22333333333 4455555555555544445554444444444444
No 289
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=64.32 E-value=23 Score=24.40 Aligned_cols=58 Identities=9% Similarity=0.089 Sum_probs=26.2
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCC-CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 135 MEKGSYAADISTYNILINIYGRGG-FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 135 m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
+.+.|+.++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 444454444332 22333443333 44455555555555444444444444444444444
No 290
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.04 E-value=52 Score=25.98 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=71.2
Q ss_pred HHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHccCCHh-HHHHHHHHH----HhCCCC--CChhhHHHHHH
Q 036275 84 YSKTGNVAKCEG----VINQMHKSGLKPDTFVINSMLNLYGRLGQFE-KMEEVLTAM----EKGSYA--ADISTYNILIN 152 (271)
Q Consensus 84 ~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m----~~~~~~--~~~~~~~~li~ 152 (271)
+.+.|+...|-+ +.+-+.+.+++++......++..+.....-+ .-.++++.+ .+.|-. -++.....+..
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 445566554444 4566667788888888888887776643211 122333333 333211 26777888889
Q ss_pred HHHcCCCHHHHHHHHHhch----------------hC--CCCCCH-HH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 153 IYGRGGFIEKMEGLFQSLP----------------AK--RLKPDV-VT-WTSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~----------------~~--g~~~~~-~~-~~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
.|.+.|++.+|+..|-.-. +. | .|+. .. ....+-.|.-.|+...|..+++...
T Consensus 143 ~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~-~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 143 KLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI-EDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999988888663211 11 2 1111 11 1222334556788888888887664
No 291
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=63.80 E-value=33 Score=23.99 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=25.3
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccC
Q 036275 67 RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS--GLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 67 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g 123 (271)
+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 344444433 223444444444455555555555544 44444444333344444444
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=63.37 E-value=31 Score=23.12 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC--HHHHHHHHHhchhCCCC
Q 036275 112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF--IEKMEGLFQSLPAKRLK 176 (271)
Q Consensus 112 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 176 (271)
.+.++.-|...|+.++|.+.++++....+ ....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44566666667777777777766642111 122333444444544432 34566666666555443
No 293
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=62.65 E-value=69 Score=26.96 Aligned_cols=141 Identities=9% Similarity=0.029 Sum_probs=68.9
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275 123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF 202 (271)
Q Consensus 123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 202 (271)
.+.+.|.++ ..+.|++=....|..-.+.+...|++++|-++--..... +--+..|.+.+-..=...|...-.+..|
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 444544444 233344434444555555666666666666665555432 3335555555544444455555556666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----hcc----cchhHHHHHHHhhccccccchhhh
Q 036275 203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH-----KDM----KTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 203 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~----~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
..+.+.| ..+..-=..+++.-..+|+.+-...++.+=+ +-| ......-+..|.+++-..+++.-|
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDlvk~~d~~LAl~IY~~a~~~~Kvi~cl 492 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCF 492 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHHHHHHCSHHHHHHHHHHCCCCC-----
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHhhhhhcCHHHHHHHHHHcCCcHHHHHHh
Confidence 6666555 4444333444555555555555554444321 000 112234466677777777766543
No 294
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=62.35 E-value=44 Score=24.62 Aligned_cols=70 Identities=11% Similarity=0.228 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-----hHHHHHHHHHHhCCCCCChh
Q 036275 76 SHMLLLTAYSKT---GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF-----EKMEEVLTAMEKGSYAADIS 145 (271)
Q Consensus 76 ~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~~~~~ 145 (271)
.+--+|+++.++ .+.+.|+-++-+|++.|-.|.-..-..++-+.-..|.- ..|...++.....|.+.-..
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 111 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLF 111 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 344566666644 77888888888998888777777666677666665542 34555555566667654433
No 295
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.98 E-value=23 Score=21.22 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=10.4
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAY 189 (271)
Q Consensus 162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~ 189 (271)
.+.++.+.+.+.+...+..|....+..+
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L 62 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 3334444443333233333333333333
No 296
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.95 E-value=62 Score=25.85 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=54.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHh-HHHHHHHHHH----hCCC--CCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 98 NQMHKSGLKPDTFVINSMLNLYGRLGQFE-KMEEVLTAME----KGSY--AADISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 98 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~----~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
+-+.+.++++|......|+..+.....-+ .=.++.+++. +.|- .=|+.....+...|.+.+++.+|+.-|-.
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il- 161 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL- 161 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-
Confidence 44455566777766666666665554311 1122223222 2221 12455666677777777777777666521
Q ss_pred hhCCCCCCHHHH--------------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 036275 171 PAKRLKPDVVTW--------------------TSRLAAYSRKKLYRRCLEIFEEMI 206 (271)
Q Consensus 171 ~~~g~~~~~~~~--------------------~~li~~~~~~g~~~~a~~~~~~m~ 206 (271)
|-.++...| ...+--|.-.++...|..+++...
T Consensus 162 ---g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 162 ---GTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp ---SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---cCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 111122232 222333455677778877766655
No 297
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=60.90 E-value=35 Score=24.28 Aligned_cols=95 Identities=9% Similarity=-0.008 Sum_probs=44.4
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHH-H-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMK-S-HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF---VINSMLN 117 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~-~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~ 117 (271)
|..+..+. .|+++....++. .++. ... . -.+.+...+..|..+.-.++.+-+.+.|..++.. -.+.|..
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~----~~~~-~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFE----KGYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP 81 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHH----HSSS-CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHh----cCcc-cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 56666666 777776555443 2211 111 1 1223334445555555555666666666555432 1222222
Q ss_pred HHHc-cCCHhHHHHHHHHHHhCCCCCC
Q 036275 118 LYGR-LGQFEKMEEVLTAMEKGSYAAD 143 (271)
Q Consensus 118 ~~~~-~g~~~~a~~~~~~m~~~~~~~~ 143 (271)
++.. ..+.....++.+.+.+.|..++
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 2211 2223334455555666665544
No 298
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=60.62 E-value=46 Score=24.26 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=39.4
Q ss_pred HHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-----hHHHHHHHHHHhCCC
Q 036275 79 LLLTAYSK---TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF-----EKMEEVLTAMEKGSY 140 (271)
Q Consensus 79 ~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~ 140 (271)
-+|+++.+ ..+.+.|+-++-+|++.|-.|.-..-..++-+.-..|.- ..|...++.....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 45566554 477888888888888888777666666666666555532 234444555555554
No 299
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=60.62 E-value=28 Score=24.42 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC--CCCCCHHHHHHHHHHHHhcCC
Q 036275 135 MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK--RLKPDVVTWTSRLAAYSRKKL 194 (271)
Q Consensus 135 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~ 194 (271)
+.+.|+..+.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34455555443 234555555555666666666666655 444555555555555555553
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.38 E-value=40 Score=23.43 Aligned_cols=52 Identities=8% Similarity=0.090 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC
Q 036275 127 KMEEVLTAMEKGSYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178 (271)
Q Consensus 127 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 178 (271)
++.++|..|...|+-.. ..-|......+-..|++++|.++|+.-.+.+-+|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 37777888877766544 45666777777778888888888887777666663
No 301
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.23 E-value=1.1e+02 Score=28.35 Aligned_cols=178 Identities=8% Similarity=0.046 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCCHhHHHHH
Q 036275 56 SDAHAVFEEMKRLGITPTMKSHM--LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN--LYGRLGQFEKMEEV 131 (271)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~ 131 (271)
+++.+.+..+....- +...... .+...+.-.|+-+-...++..+.+. . +..+...+.- ++...|+.+.+..+
T Consensus 471 eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--~-~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 471 IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--Q-HGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--S-CHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 455556655554331 1111122 2233344557766666777666653 2 3333333333 34467888888888
Q ss_pred HHHHHhCCCCCChhhH--HHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHH
Q 036275 132 LTAMEKGSYAADISTY--NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA--AYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 132 ~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~ 207 (271)
.+.+.... .|....- .++.-+|+..|+.....+++..+... ++..+-...+. ++...|+.+.+.+++..+.+
T Consensus 547 i~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 547 ITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 88887642 2322222 23455677888887777788887764 23222233333 34446666667777766655
Q ss_pred CCCCCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHh
Q 036275 208 AGCYPDGGTAKVLISACSSEDQI-EQVTTLVRTMHK 242 (271)
Q Consensus 208 ~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 242 (271)
.+ .|...--..+.-+....|.. .++.+.+..+..
T Consensus 623 ~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 623 SH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp CS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred cC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 43 44443333333333333222 456667777654
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=58.82 E-value=50 Score=24.10 Aligned_cols=22 Identities=9% Similarity=-0.179 Sum_probs=12.3
Q ss_pred chHHHHHH-hcCHHHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEM 65 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~ 65 (271)
+..+..++ .|+.++-.+.-+-|
T Consensus 26 f~~~c~aFR~~r~~dFrq~rdi~ 48 (211)
T 3bqo_A 26 CLSLCRAFRDGRSEDFRRTRNSA 48 (211)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 56777788 55555444443333
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.67 E-value=87 Score=26.78 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChh------hHH-HHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS------TYN-ILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
...+|.+++.|...+.++.|..+..... ++.+.. .|. -+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3568999999999999999999998774 222211 121 2356677889999999999886654
No 304
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=58.23 E-value=27 Score=20.87 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=24.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 65 MKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 65 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444443332 3333333332 33444455555554444444444444444444433
No 305
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=57.11 E-value=57 Score=24.20 Aligned_cols=95 Identities=11% Similarity=0.147 Sum_probs=48.0
Q ss_pred chHHHHHH-hcCHHHHHH---HHHHHHHcCCCCCHHHH--HHHHHHHHh--cCC--------------hHHHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHA---VFEEMKRLGITPTMKSH--MLLLTAYSK--TGN--------------VAKCEGVINQMH 101 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~---~~~~~~~~~~~~~~~~~--~~li~~~~~--~~~--------------~~~a~~~~~~m~ 101 (271)
+..+..++ .++.++-.+ +++-+...+.......- -.++.++.+ .|+ ++.|+.+|+.+.
T Consensus 20 f~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~ 99 (235)
T 3bu8_A 20 FHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIK 99 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHH
Confidence 66778888 555555444 44444435444333321 112222221 121 456777777776
Q ss_pred HCCCCCCHHH-------HHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 102 KSGLKPDTFV-------INSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 102 ~~~~~~~~~~-------~~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
+.-..++... --..+-.|.+.|.+++|.+++++....
T Consensus 100 ~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 100 TEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 6532222211 112344566777777777777776554
No 306
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=57.02 E-value=39 Score=24.00 Aligned_cols=150 Identities=7% Similarity=-0.009 Sum_probs=77.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChh---hHHHHHHHHH-cCC
Q 036275 84 YSKTGNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS---TYNILINIYG-RGG 158 (271)
Q Consensus 84 ~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~-~~g 158 (271)
.++.|+++....++.. ++.... ..-.+.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++. ...
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3567888876555542 322111 222345666677787776677888888888766542 2333433332 233
Q ss_pred CHHHHHHHHHhchhCCCCCCHHH---HHHHHHHHHhcCCH-HHHHHHHHHHHH-CCCCCCHHHHH--HHHHHHhccCcHH
Q 036275 159 FIEKMEGLFQSLPAKRLKPDVVT---WTSRLAAYSRKKLY-RRCLEIFEEMID-AGCYPDGGTAK--VLISACSSEDQIE 231 (271)
Q Consensus 159 ~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~-~~a~~~~~~m~~-~~~~p~~~~~~--~l~~~~~~~g~~~ 231 (271)
+.....++.+.+.+.|..++... .+..+...+..+.. ..-..+++.+.+ .|..++..... +-+....+.|..+
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~ 168 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHH
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence 45555677777777776665421 21222222333332 344567777777 77766542211 1233334556554
Q ss_pred HHHHHH
Q 036275 232 QVTTLV 237 (271)
Q Consensus 232 ~a~~~~ 237 (271)
-+.-+.
T Consensus 169 ~v~~L~ 174 (186)
T 3t8k_A 169 ALKMME 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 307
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=56.51 E-value=29 Score=21.58 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=37.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccc
Q 036275 198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGV 260 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~ 260 (271)
...+++.+.+.|+ .+...+..+-. .....++|.++++.+.+.|......+.+++.+.|.
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 3356666766663 34544444332 25677778888887777777777777777766664
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.26 E-value=27 Score=25.55 Aligned_cols=151 Identities=11% Similarity=0.062 Sum_probs=79.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhh--HHHHHHHHH
Q 036275 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV--INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST--YNILINIYG 155 (271)
Q Consensus 80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~ 155 (271)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 34455677888888888887777665544321 1234555567777764 444455555443221 123455566
Q ss_pred cCCCHHHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCc
Q 036275 156 RGGFIEKMEGLFQSLPAKRLKP---DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT---AKVLISACSSEDQ 229 (271)
Q Consensus 156 ~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~ 229 (271)
..|+.+-+..+++.....+..+ +..-.+.+. ..+..|+.+- ++.+.+.|..++... -...+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 7888887777777654222211 112222333 3345566544 444555555443211 1122333445677
Q ss_pred HHHHHHHHHH
Q 036275 230 IEQVTTLVRT 239 (271)
Q Consensus 230 ~~~a~~~~~~ 239 (271)
.+-+..+++.
T Consensus 163 ~~~v~~Ll~~ 172 (241)
T 1k1a_A 163 LSMVQLLLQH 172 (241)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 7666655553
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.89 E-value=31 Score=25.71 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 036275 70 ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD 143 (271)
Q Consensus 70 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 143 (271)
..-|+.-....|...-. .+.+..+|..|...|+-. -...|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 113 YknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 113 YKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp GTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred ccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34566655555543322 357788999999887643 456688888899999999999999999888766664
No 310
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=53.54 E-value=46 Score=26.91 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCC--HhHHHHHHHHHHhCCCCC
Q 036275 76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD---TFVINSMLNLYGRLGQ--FEKMEEVLTAMEKGSYAA 142 (271)
Q Consensus 76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~ 142 (271)
....++.-|...|++++|...++++.. |+ ......++......++ .+.+..++..+...++-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 456788888888899888888888763 33 2223333443333332 244556666666655433
No 311
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=53.39 E-value=55 Score=22.95 Aligned_cols=51 Identities=6% Similarity=0.071 Sum_probs=32.7
Q ss_pred cCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHccCCHhHHHHHHHHHHh
Q 036275 87 TGNVAKCEGVINQMHKSGLKP--DTFVINSMLN-L-----YGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 87 ~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 137 (271)
.|++-+|.++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777776654444 4455666666 2 2345777777777776654
No 312
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=51.88 E-value=71 Score=23.71 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCCCCH--HHH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 55 FSDAHAVFEEMKRLGITPTM--KSH-----MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~--~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
++.|+.+|+.+.+.-..+.. ..- -..+..|.+.|.+++|.+++++.... .++..-...-+..-.+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhcc
Confidence 67788999888765421111 111 13445688999999999999998876 334443333333333333
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.51 E-value=61 Score=22.84 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC
Q 036275 128 MEEVLTAMEKGSYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178 (271)
Q Consensus 128 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 178 (271)
..++|..|...|+-.. ..-|......+-..|++.+|.++|..-.+.+-.|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5556666666655443 34555566666666777777777776666655554
No 314
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=50.44 E-value=45 Score=20.98 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=5.8
Q ss_pred HhHHHHHHHHHHhC
Q 036275 125 FEKMEEVLTAMEKG 138 (271)
Q Consensus 125 ~~~a~~~~~~m~~~ 138 (271)
.+.|.++++.+..+
T Consensus 53 ~~~ar~Lld~L~~r 66 (97)
T 3ygs_P 53 RDQARQLIIDLETR 66 (97)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHc
Confidence 34444444444333
No 315
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=50.29 E-value=61 Score=22.51 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC
Q 036275 91 AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY 140 (271)
Q Consensus 91 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 140 (271)
+.+..+++.+.+.|..-|...-...++...+.| .....+-.++...|+
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 344444555555554433333333344433322 123344444555554
No 316
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=50.24 E-value=23 Score=24.06 Aligned_cols=43 Identities=12% Similarity=-0.029 Sum_probs=18.1
Q ss_pred HHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 151 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
+..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333333344444444444444443344444444444443333
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.06 E-value=1.6e+02 Score=27.32 Aligned_cols=27 Identities=7% Similarity=-0.164 Sum_probs=18.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 216 TAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 216 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
=|..+++.+.+.+.++.+.++-+....
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 456677777777777777776666543
No 318
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=49.74 E-value=39 Score=22.52 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=23.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444445556666666665554555555444455555544
No 319
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=49.51 E-value=99 Score=24.70 Aligned_cols=134 Identities=13% Similarity=0.042 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHH
Q 036275 54 YFSDAHAVFEEMKRLGI----TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129 (271)
Q Consensus 54 ~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 129 (271)
++++.++-++.-.+.|- ---..+|.++..-|.+.+++++|++++-.-. ..+.+.|+...+-
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHH
Confidence 34444444444444441 0123456677777889999999988763311 1122233333222
Q ss_pred H----HHHHHHhCCCCCChhhHHHHHHHHHcCCCHH-HHHHHHHhch----hCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 036275 130 E----VLTAMEKGSYAADISTYNILINIYGRGGFIE-KMEGLFQSLP----AKR--LKPDVVTWTSRLAAYSRKKLYRRC 198 (271)
Q Consensus 130 ~----~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~a 198 (271)
+ +++-..+.++++|.....-++..+.....-+ .=.++.+++. +.| ..-|+.....+...|.+.+++.+|
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 2 2333444555666666566666555544311 1112222221 111 223566667777778888887777
Q ss_pred HHHH
Q 036275 199 LEIF 202 (271)
Q Consensus 199 ~~~~ 202 (271)
...|
T Consensus 156 e~H~ 159 (336)
T 3lpz_A 156 EKHL 159 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 320
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.41 E-value=63 Score=22.42 Aligned_cols=54 Identities=6% Similarity=0.062 Sum_probs=23.3
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHH
Q 036275 198 CLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY 251 (271)
Q Consensus 198 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 251 (271)
+..+|..|...|+--. ..-|......+...|++.+|.++++.-.+.+..|...+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 3444444444433222 23334444444444555555555554444444443333
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=49.10 E-value=24 Score=23.56 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190 (271)
Q Consensus 157 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 190 (271)
.+..-.|.++++.+.+.+...+..|...-+..+.
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~ 56 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMA 56 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 3333444444444444433333333333333333
No 322
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=48.56 E-value=68 Score=22.53 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=33.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHH
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY--RRCLEIFEEMI 206 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~ 206 (271)
....+|.-|...|+.++|...++++..... .......+|......++. +.+..++..+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345677888888888888888888763321 222334444433333332 23455666653
No 323
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=47.70 E-value=14 Score=21.03 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036275 56 SDAHAVFEEMKRLGITPTMKSHMLLLTAY 84 (271)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 84 (271)
++|.+.|.+|.+..-.++..+|.-.|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56777777776554344555777777766
No 324
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.64 E-value=12 Score=27.30 Aligned_cols=16 Identities=6% Similarity=-0.104 Sum_probs=7.7
Q ss_pred HHHHHH-hcCHHHHHHH
Q 036275 46 LFVFIF-SIYFSDAHAV 61 (271)
Q Consensus 46 ~ll~~~-~g~~~~A~~~ 61 (271)
.|..+. .|+++.+..+
T Consensus 12 ~l~~A~~~g~~~~~~~L 28 (240)
T 3eu9_A 12 DIVKATQYGIYERCREL 28 (240)
T ss_dssp CHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCChHHHHHH
Confidence 344444 5665544333
No 325
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=47.63 E-value=75 Score=22.82 Aligned_cols=88 Identities=17% Similarity=0.116 Sum_probs=56.6
Q ss_pred chHHHHHH---hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C-----------
Q 036275 44 PNLFVFIF---SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK--P----------- 107 (271)
Q Consensus 44 y~~ll~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~----------- 107 (271)
|..++... +|.+.+++-++... + ..++.-|..| +|-+.++...|...++.+....+. |
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~l---N-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHKL---N-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTC---C-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHhhhhhhhhhcchHhHHHHHHHhc---c-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 66665544 88888888766532 2 2233334443 466788899999988888855433 1
Q ss_pred ---CH-HHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 108 ---DT-FVINSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 108 ---~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
|. ..|+.+...|...|+.++|+..+..--.
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 22 3456666777778888888877765433
No 326
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.62 E-value=28 Score=26.12 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=40.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhcc
Q 036275 150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT--AKVLISACSSE 227 (271)
Q Consensus 150 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~ 227 (271)
.+...+..|+.+-+..+++.....--..+..-.+.+..+ +..++.....++++.+.+.|..++... -...+...+..
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 344445566666555555432111001111222233333 345554445566677777776554321 11223334455
Q ss_pred CcHHHHHHHHH
Q 036275 228 DQIEQVTTLVR 238 (271)
Q Consensus 228 g~~~~a~~~~~ 238 (271)
|+.+-+..+++
T Consensus 230 ~~~~~v~~Ll~ 240 (285)
T 1wdy_A 230 KHLGLVQRLLE 240 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 77766666655
No 327
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=46.96 E-value=52 Score=25.64 Aligned_cols=17 Identities=0% Similarity=-0.261 Sum_probs=8.4
Q ss_pred hHHHHHH-hcCHHHHHHH
Q 036275 45 NLFVFIF-SIYFSDAHAV 61 (271)
Q Consensus 45 ~~ll~~~-~g~~~~A~~~ 61 (271)
+.|..+. .|+.+-+..+
T Consensus 170 T~L~~A~~~g~~~~v~~L 187 (337)
T 4g8k_A 170 TALMDAAEKGHVEVLKIL 187 (337)
T ss_dssp CHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHCCCHHHHHHH
Confidence 4455555 6665544333
No 328
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=46.85 E-value=16 Score=20.73 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=18.1
Q ss_pred hcCHHHHHHHHHHHHHcC-CCCCH
Q 036275 52 SIYFSDAHAVFEEMKRLG-ITPTM 74 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~-~~~~~ 74 (271)
.-+++.|...|.++...| +||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 668999999999998765 66543
No 329
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=45.50 E-value=36 Score=23.03 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=23.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275 79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123 (271)
Q Consensus 79 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 123 (271)
.++..+...+..-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444445556666666655555555555444445555444
No 330
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.68 E-value=76 Score=25.27 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275 179 VVTWTSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (271)
......++..+.+....+.+.++|+.
T Consensus 141 ~~fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 141 ASLLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 34556666777777777777777764
No 331
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=44.39 E-value=1.2e+02 Score=24.00 Aligned_cols=114 Identities=9% Similarity=0.013 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH----HHHHHHhCCCCCChhhHHH
Q 036275 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE----VLTAMEKGSYAADISTYNI 149 (271)
Q Consensus 74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~~~~~~~~~ 149 (271)
...|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +++-..+.+++++......
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3455666777888888888887764321 11223344433333 3444455566677666666
Q ss_pred HHHHHHcCCCHH-HHHHHHHhc----hhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275 150 LINIYGRGGFIE-KMEGLFQSL----PAKR--LKPDVVTWTSRLAAYSRKKLYRRCLEIF 202 (271)
Q Consensus 150 li~~~~~~g~~~-~a~~~~~~m----~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 202 (271)
++..+.....-+ .-.++++++ .+.| ..-++.....+...|.+.|++.+|...|
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 666665533211 112222222 2222 1236777777778888888888877654
No 332
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=44.08 E-value=15 Score=27.85 Aligned_cols=120 Identities=8% Similarity=0.014 Sum_probs=66.9
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHH--hcCChHHHHHHHHHHHHC---------C
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITP-------TMKSHMLLLTAYS--KTGNVAKCEGVINQMHKS---------G 104 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~---------~ 104 (271)
.+.|..+. .|+.+.+..+++.....+... +..-++.|..++. +.|+.+-+..+++.-... +
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Confidence 66777777 999998888888777665332 3344555665554 247777776666654321 1
Q ss_pred CC-CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhh----------------HHHHHHHHHcCCCHHHHHHHH
Q 036275 105 LK-PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST----------------YNILINIYGRGGFIEKMEGLF 167 (271)
Q Consensus 105 ~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----------------~~~li~~~~~~g~~~~a~~~~ 167 (271)
.. .|..-.+. +...+..|+.+-+..++ +.|..++... -.+.+...+..|+.+-+.-++
T Consensus 94 ~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 168 (273)
T 2pnn_A 94 YTDSYYKGQTA-LHIAIERRNMTLVTLLV----ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168 (273)
T ss_dssp CCSTTTTTCCH-HHHHHHTTCHHHHHHHH----HTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred cccccCCCCCH-HHHHHHcCCHHHHHHHH----HCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 11 12222233 34445677766554444 4454443321 223445556678877666666
Q ss_pred H
Q 036275 168 Q 168 (271)
Q Consensus 168 ~ 168 (271)
+
T Consensus 169 ~ 169 (273)
T 2pnn_A 169 Q 169 (273)
T ss_dssp H
T ss_pred h
Confidence 5
No 333
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=43.43 E-value=1.3e+02 Score=24.52 Aligned_cols=159 Identities=11% Similarity=-0.002 Sum_probs=87.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCChhhHHHH-
Q 036275 79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPD-----TFVINSMLNLYGRLGQFEKMEEVLTAMEKG--SYAADISTYNIL- 150 (271)
Q Consensus 79 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l- 150 (271)
-++..|...|++.+|.+++.++.+.--..| ...+-.-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 477888899999999888888876421111 234666677888889999998888776532 222333332211
Q ss_pred ---HHHHH-cCCCHHHHHHHHHhchh----CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHH
Q 036275 151 ---INIYG-RGGFIEKMEGLFQSLPA----KRLKPD---VVTWTSRLAAYSRKKLYRRCLEIFE-EMIDAGCYPDGGTAK 218 (271)
Q Consensus 151 ---i~~~~-~~g~~~~a~~~~~~m~~----~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~ 218 (271)
...+. ..+++.+|...|-+... .| .|. ...|..+ .+. -.++..+...++. .....-..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL-~aL-l~~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLL-CKI-MLGQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH-HHH-HTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHH-HHH-HcCCHHHHHHHhccccccccCCccHHHHH
Confidence 22345 78888888887776532 11 111 1123222 222 2233222222222 111111245666666
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 036275 219 VLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 219 ~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
.++.++.. +++.....++....
T Consensus 261 ~L~~a~~~-~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 261 SVAEASHK-RSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHST
T ss_pred HHHHHHHh-CCHHHHHHHHHHHH
Confidence 67766544 67777766666543
No 334
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=42.97 E-value=45 Score=18.87 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=11.8
Q ss_pred cCCCHHHHHHHHHhchhCCCCC
Q 036275 156 RGGFIEKMEGLFQSLPAKRLKP 177 (271)
Q Consensus 156 ~~g~~~~a~~~~~~m~~~g~~~ 177 (271)
..|+.+.|.+.+-.|...+..|
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSC
T ss_pred cCCCHHHHHHHHHcCcCCCCCC
Confidence 3455666666655555544444
No 335
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.68 E-value=89 Score=22.23 Aligned_cols=171 Identities=14% Similarity=0.052 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 036275 72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI 151 (271)
Q Consensus 72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 151 (271)
++...-...+..+.+.+.. .+...+.++.. .++...-...+.++...++.+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4555556666666666653 33344434443 346666666677777777644 3333433433 35666666777
Q ss_pred HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036275 152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE 231 (271)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 231 (271)
.++.+.|+.+.. ..+..+.. .++...-...+.++...|+.+ +...+..+.. .++..+-...+.++...+..
T Consensus 103 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~- 173 (211)
T 3ltm_A 103 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE- 173 (211)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-
Confidence 777777775443 33333333 356666777777777777643 4444444443 35666666677777777764
Q ss_pred HHHHHHHHHHh-cccchhHHHHHHHhhcc
Q 036275 232 QVTTLVRTMHK-DMKTALPIYFNLYGEKG 259 (271)
Q Consensus 232 ~a~~~~~~~~~-~~~~~~~~~~~~~~~~G 259 (271)
.+...+..+.+ .....-.....++.+.+
T Consensus 174 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 174 RVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 44444444443 33333333444444443
No 336
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.36 E-value=86 Score=25.29 Aligned_cols=94 Identities=9% Similarity=0.166 Sum_probs=60.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL--YRRCLEIFEEMIDAGCYPDGGTAKVLISA 223 (271)
Q Consensus 146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 223 (271)
..+.++.=|...|+.++|.+.++++..-... .......+..+.-+.++ .+...+++..+...|+-+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578889999999999999999998743211 12334444455444333 45688899999988877666666665555
Q ss_pred HhccCcHH----HHHHHHHHH
Q 036275 224 CSSEDQIE----QVTTLVRTM 240 (271)
Q Consensus 224 ~~~~g~~~----~a~~~~~~~ 240 (271)
+....|.. .|..++.++
T Consensus 298 l~~ldDl~lDiP~A~~~la~~ 318 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERF 318 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHH
T ss_pred HHhccHhhcccccHHHHHHHH
Confidence 44433322 444444444
No 337
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.21 E-value=26 Score=27.97 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCC
Q 036275 147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK--LYRRCLEIFEEMIDAGCYP 212 (271)
Q Consensus 147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p 212 (271)
...++.-|...|+.++|.+.++++..... .......++......+ ..+.+..++..+.+.|+-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~--~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL--LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 56788888899999999999998863221 1112222222222222 2345666777777666443
No 338
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=41.18 E-value=52 Score=19.09 Aligned_cols=46 Identities=9% Similarity=-0.021 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 227 (271)
.++.++..+++..-.+.+...+.+..+.| ..+..+|.--++..++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 45666666666666777777777777776 55666666666665553
No 339
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=40.42 E-value=2.2e+02 Score=26.22 Aligned_cols=49 Identities=6% Similarity=-0.027 Sum_probs=23.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275 86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK 137 (271)
Q Consensus 86 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 137 (271)
+.|..++-..++++..... +..--..++.+++...+.+...++++....
T Consensus 738 ~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 3444444444455544432 222334455555555555555555554443
No 340
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.34 E-value=94 Score=21.53 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC
Q 036275 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175 (271)
Q Consensus 127 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 175 (271)
.+..+++.+.+.|+-.|..--...+....+.| .....+-.++..+|+
T Consensus 48 ~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 48 DYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 34455555555555444443344444444433 223445555555555
No 341
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=38.52 E-value=1.7e+02 Score=24.30 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=33.2
Q ss_pred cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHCC
Q 036275 156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY-----RRCLEIFEEMIDAG 209 (271)
Q Consensus 156 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~ 209 (271)
+.++.+.|+..+.+|.+.|..|....-..++.+.-.-|.- .-|...++....-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 4577888888888888877666554445555555444442 24555555555666
No 342
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=38.09 E-value=83 Score=22.65 Aligned_cols=183 Identities=7% Similarity=-0.072 Sum_probs=87.8
Q ss_pred hHHHHHH-hcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 036275 45 NLFVFIF-SIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSG----LKPDTFVINSML 116 (271)
Q Consensus 45 ~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li 116 (271)
+.|..+. .|+.+.+..+++. .|..++ ..-++ .+...+..|+.+-+..+++.-.... ...|..-. +.+
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~-t~L 79 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ-TAL 79 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC-CHH
T ss_pred CHHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc-CHH
Confidence 4455555 7777666555542 133322 22222 3344456677666655554322110 00111222 234
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCChh---------------hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH-
Q 036275 117 NLYGRLGQFEKMEEVLTAMEKGSYAADIS---------------TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV- 180 (271)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~- 180 (271)
...+..|+.+-+. .+.+.|..++.. .-.+.+...+..|+.+-+.-+++ .|..++..
T Consensus 80 ~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d 151 (232)
T 2rfa_A 80 HIAVINQNVNLVR----ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE----HGADIRAQD 151 (232)
T ss_dssp HHHHHTTCHHHHH----HHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH----TTCCTTCCC
T ss_pred HHHHHcCCHHHHH----HHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCC
Confidence 4445667765444 344444444331 12234444555677655555544 34333211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275 181 -TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP---------DGGTAKVLISACSSEDQIEQVTTLVRTMH 241 (271)
Q Consensus 181 -~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 241 (271)
.-.+.+...+..|+.+-+..+++.+.+.|..+ |..-.+. +......|+.+-+..+++.-.
T Consensus 152 ~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 152 SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCc
Confidence 11223444567788887777778888776533 2222233 333345577766666655543
No 343
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=37.76 E-value=85 Score=25.37 Aligned_cols=73 Identities=5% Similarity=-0.007 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHH
Q 036275 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY--RRCLEIFEEMIDAGCYPDGGTAK 218 (271)
Q Consensus 145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~ 218 (271)
.....+|.=|...|+.++|.+.++++...+ .........+|......++. +.+..++..+...++-+......
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~-~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~ 87 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRAPK-HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQ 87 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCch-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 345677888888899999998888875310 00123334444444443332 34556666666665544443333
No 344
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.31 E-value=61 Score=21.38 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=21.1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036275 62 FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK 102 (271)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 102 (271)
|+.+....+.|++..--.-+..+...++++.|..+.-.+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444443333333334444566777777777766654
No 345
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.94 E-value=1.1e+02 Score=21.54 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=35.4
Q ss_pred HHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 036275 161 EKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG 215 (271)
Q Consensus 161 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 215 (271)
+...++|..|...|+-.. ...|......+-..|++.+|.++|...++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 346667777776665444 3345555666667777777777777777776666543
No 346
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=36.92 E-value=1e+02 Score=21.21 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275 196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
+.+..+|+.+-..| -...++.-++..+.+...+-.....+..
T Consensus 140 ~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 140 QHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp HHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 34445555443221 1123445555555555555555555443
No 347
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=36.17 E-value=19 Score=24.23 Aligned_cols=13 Identities=0% Similarity=0.008 Sum_probs=7.0
Q ss_pred hcCHHHHHHHHHH
Q 036275 52 SIYFSDAHAVFEE 64 (271)
Q Consensus 52 ~g~~~~A~~~~~~ 64 (271)
.|+.+.+..+++.
T Consensus 12 ~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 12 RGDVQEVRRLLHR 24 (156)
T ss_dssp HTCHHHHHHHHHT
T ss_pred hCCHHHHHHHHHh
Confidence 5555555555544
No 348
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=35.97 E-value=78 Score=20.66 Aligned_cols=66 Identities=8% Similarity=0.002 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHh
Q 036275 55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK-SGLKPDTFVINSMLNLYGRLGQFE 126 (271)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~ 126 (271)
+++|+.-+++.... ++|......++..+-.. ++.+.++.++..+ .|+ ++.++...++...+.|-.+
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCC
Confidence 44555555555333 34444444444443332 3334444433332 233 2334444555555555443
No 349
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=35.75 E-value=2.8e+02 Score=25.90 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=91.4
Q ss_pred hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHH-HH---HHHHHHHccCCH
Q 036275 52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA--YSKTGNVAKCEGVINQMHKSGLKPDTFV-IN---SMLNLYGRLGQF 125 (271)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~---~li~~~~~~g~~ 125 (271)
+|+-+-+..++..+.+.. +......+.-+ +...|+.+.+..+.+.+... .++.. |. ++.-+|+..|+.
T Consensus 503 Tgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 503 TGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp CCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred cCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCH
Confidence 577777777777766532 33333334433 44678889998888888874 23332 33 345567888998
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 036275 126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY-RRCLEIFEE 204 (271)
Q Consensus 126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~ 204 (271)
....+++..+.+.. ..++.-...+.-++...|+.+.+.++++.+.+.+ .|...---.+.-+....|+. .++..++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 88888998888752 2344444444445556788788888888777654 33333223333333444443 577788888
Q ss_pred HHH
Q 036275 205 MID 207 (271)
Q Consensus 205 m~~ 207 (271)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 865
No 350
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.62 E-value=28 Score=26.66 Aligned_cols=20 Identities=0% Similarity=-0.059 Sum_probs=11.2
Q ss_pred chHHHHHH-hcCHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFE 63 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~ 63 (271)
++.|..+. .|+.+-+..+++
T Consensus 32 ~t~L~~A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 32 HSASYYAIADNNVRLVCTLLN 52 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHh
Confidence 55566666 676665444443
No 351
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=34.99 E-value=70 Score=22.35 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=15.4
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275 131 VLTAMEKGSYAADISTYNILINIYGR 156 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~~~~~ 156 (271)
.+.++.++|-|-|...-|.||...+.
T Consensus 21 ~L~~Lirs~~PeDL~~AN~LiK~m~~ 46 (158)
T 1naf_A 21 MLARLLKSSHPEDLRAANKLIKEMVQ 46 (158)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHhc
Confidence 55666666655556666666655543
No 352
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=34.95 E-value=2.7e+02 Score=25.64 Aligned_cols=120 Identities=6% Similarity=0.022 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275 78 MLLLTAYSKTGN---VAKCEGVINQMHKS----GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL 150 (271)
Q Consensus 78 ~~li~~~~~~~~---~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 150 (271)
..++...|..|. .+.|.+.|++.... .++||.. ..+.....+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 346677777776 45677778776653 2455543 233444456677777777777777653 44455678
Q ss_pred HHHHHcCCCHHHHHHHHHhchhCC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 036275 151 INIYGRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKK-LYRRCLEIFEE 204 (271)
Q Consensus 151 i~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~ 204 (271)
+.+++...+.....++++...... +++.. ...++.+...+. ..+.|++.+.+
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd--~~~~~~~v~~n~~g~~~~~~f~~~ 818 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQD--ATSTINSIASNVIGQPLAWDFVQS 818 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGG--HHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhh--HHHHHHHHhcChHHHHHHHHHHHH
Confidence 899999999999999988876533 33322 233344443322 23445555443
No 353
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.93 E-value=1.4e+02 Score=23.49 Aligned_cols=77 Identities=9% Similarity=0.180 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036275 148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL--YRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225 (271)
Q Consensus 148 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 225 (271)
+.++.-|...|+.++|.+.++++...... .......+..+.-+.++ .+.+.+++..+...|+-+.......+-+.+.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~ 248 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYN 248 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34555555566666666666665421111 11223333333333222 3345556666665555544444444433333
No 354
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=33.07 E-value=95 Score=19.73 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcccc-hhHHHHHHHhhccc
Q 036275 215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMKT-ALPIYFNLYGEKGV 260 (271)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~G~ 260 (271)
.....+...+...|..+.|..+++.+.+...+ -+..+++++.+.|.
T Consensus 44 ~d~E~I~a~~~~~G~~~aa~~LL~~L~r~~~~gWf~~fl~AL~~~g~ 90 (100)
T 2lwd_A 44 QECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 90 (100)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHhcCcCCcHHHHHHHHHHcCC
Confidence 34444555566666666677776666653332 33456666666653
No 355
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=33.04 E-value=51 Score=22.32 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=3.1
Q ss_pred HhcCCHH
Q 036275 190 SRKKLYR 196 (271)
Q Consensus 190 ~~~g~~~ 196 (271)
+..|+.+
T Consensus 116 ~~~~~~~ 122 (165)
T 3twr_A 116 AAKGKYE 122 (165)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3445443
No 356
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.94 E-value=1.3e+02 Score=21.47 Aligned_cols=154 Identities=9% Similarity=-0.043 Sum_probs=81.6
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLG----ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF-------- 110 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------- 110 (271)
++.|..+. .|+.+-+..+++.-.... ...+..-.+.| ...+..|+.+-+ +.+.+.|..++..
T Consensus 38 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~~~~~ 112 (232)
T 2rfa_A 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL-HIAVINQNVNLV----RALLARGASVSARATGSVFHY 112 (232)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH-HHHHHTTCHHHH----HHHHHTTCCTTCCCCSGGGSC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH-HHHHHcCCHHHH----HHHHhCCCCCCcccCCcceee
Confidence 67777777 888876666665422210 01111223333 334455665544 4444555444332
Q ss_pred -------HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC----
Q 036275 111 -------VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS--TYNILINIYGRGGFIEKMEGLFQSLPAKRLKP---- 177 (271)
Q Consensus 111 -------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---- 177 (271)
.-.+.+...+..|+.+-+. .+.+.|..++.. .-.+.+...+..|+.+-+..+++.+.+.|..+
T Consensus 113 ~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~ 188 (232)
T 2rfa_A 113 RPHNLIYYGEHPLSFAACVGSEEIVR----LLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS 188 (232)
T ss_dssp CTTCSCCCCSSHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCC
T ss_pred cccccccCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhh
Confidence 1123344555677765444 344555544322 12245666778889888877777777666433
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 178 -----DVVTWTSRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 178 -----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
|..-.+. +...++.|+.+-+..+++.-..
T Consensus 189 ~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 189 LELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp GGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCcc
Confidence 2223333 3444667787776666665544
No 357
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.24 E-value=55 Score=24.92 Aligned_cols=141 Identities=7% Similarity=-0.031 Sum_probs=61.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHcC
Q 036275 81 LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI---STYNILINIYGRG 157 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~ 157 (271)
+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..+ .+.|..++. .-. +.+...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~-t~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGN-TALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSC-CHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCC-cHHHHHHHc
Confidence 33344566665544433 334333322122344555666766544333 334443332 222 233444556
Q ss_pred CCHHHHHHHHHhchhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHhccCcHHH
Q 036275 158 GFIEKMEGLFQSLPAKRLKPDV---VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP-DG-GTAKVLISACSSEDQIEQ 232 (271)
Q Consensus 158 g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~-~~~~~l~~~~~~~g~~~~ 232 (271)
|+.+-+.-+++. |..++. .-+...+...+..|+.+- .+.+.+.|..+ +. .-.+. +...+..|..+-
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~-L~~A~~~g~~~~ 176 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSC-IHITIKNGHVDM 176 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHH-HHHHHHTTCHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccH-HHHHHHcChHHH
Confidence 776655555554 222221 111233444455666543 33334443332 11 12222 333345566666
Q ss_pred HHHHHHH
Q 036275 233 VTTLVRT 239 (271)
Q Consensus 233 a~~~~~~ 239 (271)
+.-+++.
T Consensus 177 v~~Ll~~ 183 (285)
T 3kea_A 177 MILLLDY 183 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6655554
No 358
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.73 E-value=28 Score=26.13 Aligned_cols=113 Identities=8% Similarity=0.026 Sum_probs=56.3
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMK---SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF--VINSMLN 117 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~ 117 (271)
.+.|..+. .|+++.+..++ +.|..++.. .-...+...+..|+.+- ++.+.+.|..++.. .-.+.+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHH
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHH
Confidence 45566666 88887555544 445433321 11234445556676654 44455555544321 1123344
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHcCCCHHHHHHHHHh
Q 036275 118 LYGRLGQFEKMEEVLTAMEKGSYAADI---STYNILINIYGRGGFIEKMEGLFQS 169 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 169 (271)
..+..|+.+-+ +.+.+.|..++. ..+ +.+...+..|+.+-+..+++.
T Consensus 78 ~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 78 LAAIAGSVKLL----KLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKR 127 (285)
T ss_dssp HHHHHTCHHHH----HHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCHHHH----HHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHh
Confidence 45566776544 444455544432 222 334455667777655555553
No 359
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=31.38 E-value=1.5e+02 Score=21.39 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=12.4
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHH
Q 036275 131 VLTAMEKGSYAADISTYNILINIYG 155 (271)
Q Consensus 131 ~~~~m~~~~~~~~~~~~~~li~~~~ 155 (271)
.+.++.++|-+-|...-|.||...+
T Consensus 37 ~L~eLirs~~PeDL~~AN~LiK~m~ 61 (186)
T 1oxz_A 37 MLARLLKSSHPEDLRAANKLIKEMV 61 (186)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHh
Confidence 4555555554444445555554443
No 360
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=30.39 E-value=97 Score=19.03 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 036275 157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL 194 (271)
Q Consensus 157 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 194 (271)
....++|.++++.+... ....|..++.++...+.
T Consensus 49 ~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCH
Confidence 34445555555555443 23445555555544443
No 361
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.66 E-value=1.5e+02 Score=21.22 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=50.7
Q ss_pred hHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 036275 45 NLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT---FVINSMLNLYG 120 (271)
Q Consensus 45 ~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~ 120 (271)
+.+..+. .|+++....++..-...-..++..-++.| ...+..|+.+-+ +.+.+.|..++. ...+ .+...+
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~ 81 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEIV----EFLLQLGVPVNDKDDAGWS-PLHIAA 81 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCC-HHHHHH
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCC-HHHHHH
Confidence 3444555 78888777776643221111222223233 333455554433 344444544332 1122 233444
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHcCCCHHHHHHHHH
Q 036275 121 RLGQFEKMEEVLTAMEKGSYAADIST--YNILINIYGRGGFIEKMEGLFQ 168 (271)
Q Consensus 121 ~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 168 (271)
..|+.+- ++.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 82 ~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 82 SAGXDEI----VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127 (231)
T ss_dssp HHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCHHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 5566553 333444444332211 1233444455677665555544
No 362
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.55 E-value=2.7e+02 Score=23.84 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHH-HHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275 74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDT--FVI-NSMLNLYGRLGQFEKMEEVLTAMEKG 138 (271)
Q Consensus 74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~-~~li~~~~~~g~~~~a~~~~~~m~~~ 138 (271)
...+|.+++.|...+.++.|..+..+..---. .++. .+| -.+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56788999999999999999999988752110 1122 223 23566777889999999999888764
No 363
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=29.46 E-value=1.7e+02 Score=21.55 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC
Q 036275 127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175 (271)
Q Consensus 127 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 175 (271)
.+..+++.+.+.|+-.|..--...+....+.+.+ ....+-.++..+|+
T Consensus 94 ~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI 141 (221)
T 3d5l_A 94 FVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGI 141 (221)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCC
Confidence 3444455555555443333333344433331111 23334444445554
No 364
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=29.41 E-value=32 Score=22.90 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036275 181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235 (271)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 235 (271)
.|.-.|...+.+++.+-|.++++-.++.| +...|.+.+-.|-..=++|-+.+
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 35555666666777777777777776655 55666666666666555555544
No 365
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=29.23 E-value=33 Score=23.04 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=11.6
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 036275 81 LTAYSKTGNVAKCEGVINQ 99 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~ 99 (271)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444566777776666655
No 366
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.98 E-value=1.6e+02 Score=21.15 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=30.0
Q ss_pred HHHcCCCHHHHHHHHHhchhCCCC--C--------------CHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275 153 IYGRGGFIEKMEGLFQSLPAKRLK--P--------------DVV-TWTSRLAAYSRKKLYRRCLEIFEEM 205 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~~~g~~--~--------------~~~-~~~~li~~~~~~g~~~~a~~~~~~m 205 (271)
+|-+.+++.+|...++.+....+. | |.. -|+.+...+.+.|+.++|.+.+..-
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 455667777777777776644332 1 111 2444445555666666666666543
No 367
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=28.98 E-value=2.9e+02 Score=24.13 Aligned_cols=194 Identities=7% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHHHHCC-----------------
Q 036275 46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAK--CEGVINQMHKSG----------------- 104 (271)
Q Consensus 46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--a~~~~~~m~~~~----------------- 104 (271)
....+. .|+..+|......+-..| ...+..+..++..+.+.|.+.. ...=++.+...|
T Consensus 107 ~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~ 185 (618)
T 1qsa_A 107 NYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQ 185 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHH
Q ss_pred ----------------------CCCCHHHHHHHHHHHHcc--CCHhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcC
Q 036275 105 ----------------------LKPDTFVINSMLNLYGRL--GQFEKMEEVLTAMEKGSYAAD---ISTYNILINIYGRG 157 (271)
Q Consensus 105 ----------------------~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 157 (271)
+.++...-..++.+..+. .+.+.|...+....+.....+ ......+.......
T Consensus 186 ~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~ 265 (618)
T 1qsa_A 186 TIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGN 265 (618)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCST
T ss_pred HHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHc
Q ss_pred CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036275 158 GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237 (271)
Q Consensus 158 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 237 (271)
+...++...+...... .++.....-.++...+.|+++.|...|+.|-... .....-.-.+.++....|+.++|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~ 342 (618)
T 1qsa_A 266 DVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEIL 342 (618)
T ss_dssp TCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHHHhc
Q 036275 238 RTMHKD 243 (271)
Q Consensus 238 ~~~~~~ 243 (271)
..+.+.
T Consensus 343 ~~~a~~ 348 (618)
T 1qsa_A 343 HQLMQQ 348 (618)
T ss_dssp HHHHTS
T ss_pred HHHhcC
No 368
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=28.77 E-value=58 Score=23.41 Aligned_cols=172 Identities=8% Similarity=-0.011 Sum_probs=77.8
Q ss_pred hHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHH
Q 036275 45 NLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT------FVINSMLN 117 (271)
Q Consensus 45 ~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~ 117 (271)
+.|..+. .|+.+.+..+++.-.......+..-.+.|. ..+..|+.+- .+.+.+.|..++. ... +.+.
T Consensus 4 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~g~-t~L~ 77 (228)
T 2dzn_A 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLH-WSVSFQAHEI----TSFLLSKMENVNLDDYPDDSGW-TPFH 77 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHH-HHHHTTCHHH----HHHHHHTCTTCCGGGCCCTTSC-CHHH
T ss_pred cHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHH-HHHHcCCHHH----HHHHHhccccccccccCCCCCC-CHHH
Confidence 3455555 788777776665432221112333333333 3445566544 4444555522221 222 2344
Q ss_pred HHHccCCHhHHHHHHHHHHhCC--CCC---ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH---HHHHHHHHHH
Q 036275 118 LYGRLGQFEKMEEVLTAMEKGS--YAA---DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV---VTWTSRLAAY 189 (271)
Q Consensus 118 ~~~~~g~~~~a~~~~~~m~~~~--~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~ 189 (271)
..+..|+.+ +++.+.+.| ..+ +.... +.+...+..|+.+-+.-+++. |..++. .-.+. +...
T Consensus 78 ~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~-L~~A 147 (228)
T 2dzn_A 78 IACSVGNLE----VVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVSQFLIEN----GASVRIKDKFNQIP-LHRA 147 (228)
T ss_dssp HHHHHCCHH----HHHHHHSSSSCCCTTCCCTTCC-CHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCH-HHHH
T ss_pred HHHHcCCHH----HHHHHHhCCCCcccccCCcCCC-CHHHHHHHcCCHhHHHHHHHc----CCCccccCCCCCCH-HHHH
Confidence 445667655 344444544 222 12222 334445566777655555543 333321 11222 3334
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCC---HHHHHHHHHHHhccCcHHHHHHHH
Q 036275 190 SRKKLYRRCLEIFEEMIDAG-CYPD---GGTAKVLISACSSEDQIEQVTTLV 237 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~~-~~p~---~~~~~~l~~~~~~~g~~~~a~~~~ 237 (271)
+..|+.+ +++.+.+.| ..++ ..-.+. +......|+.+-+..++
T Consensus 148 ~~~~~~~----~v~~Ll~~g~~~~~~~d~~g~t~-L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 148 ASVGSLK----LIELLCGLGKSAVNWQDKQGWTP-LFHALAEGHGDAAVLLV 194 (228)
T ss_dssp HHTTCHH----HHHHHHTTTCCCSCCCCTTSCCH-HHHHHHTTCHHHHHHHH
T ss_pred HHcCCHH----HHHHHHhcCcccccCcCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 5667664 344444544 3322 222222 33334567776666666
No 369
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.59 E-value=1.2e+02 Score=19.32 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=18.8
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275 162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK 193 (271)
Q Consensus 162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 193 (271)
.|.++.+++...|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34555555555666666666666666655444
No 370
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.26 E-value=1.3e+02 Score=19.79 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=19.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275 202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242 (271)
Q Consensus 202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 242 (271)
|+.+....+.|+...-..-+..+...++++.|.++...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444433332222222234455666666666666544
No 371
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=28.16 E-value=1.6e+02 Score=20.81 Aligned_cols=50 Identities=12% Similarity=0.035 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 036275 91 AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA 141 (271)
Q Consensus 91 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 141 (271)
+.+..+++.+.+.|+.-|...-...++...+.|.+ ....+-.++...|++
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 34455666666666654444444555555444322 234455666666663
No 372
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.55 E-value=2.6e+02 Score=23.14 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=21.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036275 190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225 (271)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 225 (271)
.+..+.+.|...+.+|.+.|..|....-..+..+..
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~e 301 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPLYVARRCLAIASE 301 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 345678888888888888776554443333333333
No 373
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.31 E-value=2.3e+02 Score=24.47 Aligned_cols=69 Identities=17% Similarity=0.058 Sum_probs=24.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 036275 93 CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163 (271)
Q Consensus 93 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 163 (271)
......++..+=.--+..--.-++..|.+.|-.+.|.++++.+-.+-+ -+...+ ..+..|+|+|+++.+
T Consensus 500 gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 500 KKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHHHHHcCChhhc
Confidence 334444444332222344455666667777777777777666655422 222233 455566666666554
No 374
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.39 E-value=60 Score=24.04 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=49.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHH--ccCCHhHHHHHHHHHHhCC---------CC-
Q 036275 81 LTAYSKTGNVAKCEGVINQMHKSGLKPDTF-------VINSMLNLYG--RLGQFEKMEEVLTAMEKGS---------YA- 141 (271)
Q Consensus 81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~--~~g~~~~a~~~~~~m~~~~---------~~- 141 (271)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 445567788888888888777766555533 2334444432 6688887777776653321 11
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHH
Q 036275 142 ADISTYNILINIYGRGGFIEKMEGLFQ 168 (271)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~a~~~~~ 168 (271)
.+..-. +.+...+..|+.+-+.-+++
T Consensus 89 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~ 114 (260)
T 3jxi_A 89 VYYRGQ-TALHIAIERRCKHYVELLVE 114 (260)
T ss_dssp SSEESB-CHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCC-CHHHHHHHcCCHHHHHHHHh
Confidence 111222 33445556788776655555
No 375
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.60 E-value=4.5e+02 Score=25.68 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=16.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275 86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL 122 (271)
Q Consensus 86 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 122 (271)
..+++..|++++.++.+. +|+...|..++..+...
T Consensus 1296 ~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGAL 1330 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHc
Confidence 344555555555555444 24444444444444333
No 376
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.59 E-value=88 Score=16.99 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=16.9
Q ss_pred CcHHHHHHHHHHHHhcccchhHHH
Q 036275 228 DQIEQVTTLVRTMHKDMKTALPIY 251 (271)
Q Consensus 228 g~~~~a~~~~~~~~~~~~~~~~~~ 251 (271)
.|+..|.++++++.+.|..+...+
T Consensus 7 RDv~RaiELle~lq~sgevp~~KL 30 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAKL 30 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHH
Confidence 467778888888877776665544
No 377
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.44 E-value=1.8e+02 Score=20.51 Aligned_cols=153 Identities=14% Similarity=0.013 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275 91 AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL 170 (271)
Q Consensus 91 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 170 (271)
.++...+-+..+ .++...-...+..+.+.+..+ +...+..+... ++...-...+.++.+.+..+....+.+ +
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~-~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIK-A 89 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHH-H
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHH-H
Confidence 333444444443 457777777777777777744 44444444443 466666677788888777544444443 3
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh-cccchhH
Q 036275 171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-DMKTALP 249 (271)
Q Consensus 171 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~ 249 (271)
.. .++...-...+.++.+.++.+ +...+..+.. .++...-...+.++...|+.+. ...+..+.+ .+...-.
T Consensus 90 l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~d~~~~vr~ 161 (211)
T 3ltm_A 90 LK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALKDEDGWVRQ 161 (211)
T ss_dssp TT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTTCSSHHHHH
T ss_pred Hc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHcCCCHHHHH
Confidence 33 357777778888888888754 3444444443 4676666667777777666443 333333333 2222333
Q ss_pred HHHHHHhhcc
Q 036275 250 IYFNLYGEKG 259 (271)
Q Consensus 250 ~~~~~~~~~G 259 (271)
....++.+.|
T Consensus 162 ~a~~aL~~~~ 171 (211)
T 3ltm_A 162 SAADALGEIG 171 (211)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 3444444444
No 378
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.94 E-value=84 Score=21.94 Aligned_cols=125 Identities=11% Similarity=0.033 Sum_probs=58.3
Q ss_pred chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMK---SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP---DTFVINSML 116 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li 116 (271)
++.|..+. .|+.+-+.. +.+.|..++.. ..+. +...+..|+.+-+..+++. .+..+ +.... +.+
T Consensus 40 ~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~-t~L 110 (201)
T 3hra_A 40 NTPLNIAVHNNDIEIAKA----LIDRGADINLQNSISDSP-YLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGG-NAL 110 (201)
T ss_dssp CCHHHHHHHHTCHHHHHH----HHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSC-CSH
T ss_pred CCHHHHHHHcCCHHHHHH----HHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhc---cCcccccccCCCC-cHH
Confidence 66777777 888664444 44555444322 2223 3344556776655555433 22121 11111 234
Q ss_pred HHHHccCCHhHHHHHHHHH-HhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC
Q 036275 117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178 (271)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 178 (271)
...+..|+.+-+..+++.- .... ..+..-.+.|..+.........-.++++.+.+.|..++
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 4456677776555544432 1111 12333334444444333323333555555556665554
No 379
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.75 E-value=67 Score=23.73 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=12.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC
Q 036275 83 AYSKTGNVAKCEGVINQMHKSGLK 106 (271)
Q Consensus 83 ~~~~~~~~~~a~~~~~~m~~~~~~ 106 (271)
..++.|+.+.+..+++.+.+.|..
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344556666555555555555443
No 380
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=24.73 E-value=1.8e+02 Score=20.18 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=4.4
Q ss_pred HHHHhchhCCC
Q 036275 165 GLFQSLPAKRL 175 (271)
Q Consensus 165 ~~~~~m~~~g~ 175 (271)
.+-.++..+|+
T Consensus 86 ~I~~eL~~KGI 96 (162)
T 3dfg_A 86 HIRAELGTHGL 96 (162)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 33334444443
No 381
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.60 E-value=1.2e+02 Score=21.60 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036275 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE 227 (271)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 227 (271)
....++.++..++.-.-.+.+...+.+....| ..+..+|.--++.+++.
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34456777777777777777777777777776 45666776666666553
No 382
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.59 E-value=70 Score=23.35 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=27.0
Q ss_pred HHHHHHHHHhchhCCCCCCH-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 036275 160 IEKMEGLFQSLPAKRLKPDV-VTWT-----SRLAAYSRKKLYRRCLEIFEEMID 207 (271)
Q Consensus 160 ~~~a~~~~~~m~~~g~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~ 207 (271)
++.|+.+|+.+...- ++. .... ..+..|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~--~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEH--DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCC--CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 467777777776542 111 1122 223457778888888888877544
No 383
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=24.34 E-value=2.9e+02 Score=22.52 Aligned_cols=147 Identities=10% Similarity=0.055 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----C-C-hHHHHHHH----HH-----HHHCCCCCC-----HHHHH
Q 036275 54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT----G-N-VAKCEGVI----NQ-----MHKSGLKPD-----TFVIN 113 (271)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~-~-~~~a~~~~----~~-----m~~~~~~~~-----~~~~~ 113 (271)
.++.++++...+.. ..+...|..++..+... . . ..+....| .+ +.+.|..++ ...-.
T Consensus 125 ~~~~~l~l~~yL~~---E~~y~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~~~~~~~~~~lR~ 201 (419)
T 3rjo_A 125 SIEKALDLSLYLKH---ETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRS 201 (419)
T ss_dssp CHHHHHHHHGGGGG---CCSHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSSCCSCHHHHHHHH
T ss_pred CHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence 56777777766644 34666676666555321 1 1 01122212 11 123455443 23345
Q ss_pred HHHHHHHccCCH---hHHHHHHHHHHhCC----CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275 114 SMLNLYGRLGQF---EKMEEVLTAMEKGS----YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL 186 (271)
Q Consensus 114 ~li~~~~~~g~~---~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 186 (271)
.++...|..|+. +.|.+.|+.....+ ++||... .+...-.+ .-++-..+++..... .+..--..++
T Consensus 202 ~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~~ll 274 (419)
T 3rjo_A 202 QLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS---LSSTEKSQIE 274 (419)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC---CCHHHHHHHH
Confidence 677788888874 56777887766542 5555432 22111122 233344555555543 3555667888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 036275 187 AAYSRKKLYRRCLEIFEEMIDAGC 210 (271)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~m~~~~~ 210 (271)
.+++...+.+...++++......+
T Consensus 275 ~aL~~s~d~~ll~~~L~~~l~~~~ 298 (419)
T 3rjo_A 275 FALCRTQNKEKLQWLLDESFKGDK 298 (419)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTSS
T ss_pred HHcCCCCCHHHHHHHHHHHhCCCC
Confidence 888888999988898888876553
No 384
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.70 E-value=3.6e+02 Score=23.36 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH--HHHHHHhhccccc
Q 036275 194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP--IYFNLYGEKGVAR 262 (271)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~G~~~ 262 (271)
+.+.....+.+++.+=---+..-...++..|.+.|-.+.|.++++.+-.+...... .-+..|.++|+++
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~geAL~~f~rA~~~~ 566 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNIIESIANFSRAGKYE 566 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHHHHHHHHHHcCChh
Confidence 34444555555554311113344556666677777777777777666544333222 2334456666554
No 385
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.54 E-value=88 Score=23.04 Aligned_cols=119 Identities=9% Similarity=-0.015 Sum_probs=65.3
Q ss_pred hHHHHHH-hcCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCC--------
Q 036275 45 NLFVFIF-SIYFSDAHAVFEEMKRLGITPTM-------KSHMLLLTAYSK--TGNVAKCEGVINQMHKSGLK-------- 106 (271)
Q Consensus 45 ~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~-------- 106 (271)
+.|..+. .|+.+.+..+++.+.+.|..++. .-.+.|..++.. .|+.+-+..+++.-...+..
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 4455666 88988888888888777755443 334445444432 27777776666654443211
Q ss_pred --CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhh---------------HHHHHHHHHcCCCHHHHHHHHH
Q 036275 107 --PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST---------------YNILINIYGRGGFIEKMEGLFQ 168 (271)
Q Consensus 107 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---------------~~~li~~~~~~g~~~~a~~~~~ 168 (271)
.|..-. +.+...+..|+.+-+.. +.+.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 84 ~~~d~~g~-t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 84 TDEFYQGH-SALHIAIEKRSLQCVKL----LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CSTTTTTC-CHHHHHHHTTCHHHHHH----HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCC-CHHHHHHHcCCHHHHHH----HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 011222 23444556777665444 444454443321 2234455566788766666665
No 386
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.46 E-value=2.3e+02 Score=21.05 Aligned_cols=52 Identities=12% Similarity=0.285 Sum_probs=27.4
Q ss_pred HHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036275 161 EKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP 212 (271)
Q Consensus 161 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 212 (271)
+++.++|..|...|+-.. ...|......+-..|++.+|.++|+..++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345555555555554333 2334444455555566666666666655554454
No 387
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=23.28 E-value=97 Score=24.59 Aligned_cols=104 Identities=7% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc----CcHHHHHHHH
Q 036275 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD---GGTAKVLISACSSE----DQIEQVTTLV 237 (271)
Q Consensus 165 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~----g~~~~a~~~~ 237 (271)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|.... .....+++..+... .+++++..++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q ss_pred HHHHhcc---cchhHHHHHHHhhccccccchhhh
Q 036275 238 RTMHKDM---KTALPIYFNLYGEKGVARSNLGQY 268 (271)
Q Consensus 238 ~~~~~~~---~~~~~~~~~~~~~~G~~~~a~~~~ 268 (271)
+.+.... ......+-.++.-...+..+-..+
T Consensus 310 ~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~h~ 343 (345)
T 2qfz_A 310 QNLPTAHWDDEDISLLLAEAYRLKFAFADAPNHY 343 (345)
T ss_dssp TSCSCTTCCHHHHHHHHHHHHHHHHHC-------
T ss_pred HcCCCcCCchhHHHHHHHHHHHHHHHHHhhHhhc
No 388
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.81 E-value=2e+02 Score=20.07 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=13.5
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHH
Q 036275 113 NSMLNLYGRLGQFEKMEEVLTAME 136 (271)
Q Consensus 113 ~~li~~~~~~g~~~~a~~~~~~m~ 136 (271)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555566666666655553
No 389
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.78 E-value=2.6e+02 Score=21.45 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCCCCChh--hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275 129 EEVLTAMEKGSYAADIS--TYNILINIYGRGGFIEKMEGLFQSLPAKRLKP---DVVTWTSRLAAYSRKKLYRRCLEIFE 203 (271)
Q Consensus 129 ~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~ 203 (271)
..+.+.+.+.|..++.. .-.+.+...+..|..+.+..+++.- |..+ |..-.+.|..| ++.|+.+ +.+
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~---~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~ 290 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTALLLA-VELKLKK----IAE 290 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTST---TCCTTCBCTTSCBHHHHH-HHTTCHH----HHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc---CCcccCcCCCCCCHHHHH-HHcCCHH----HHH
Confidence 33444556666555432 1123455666788887777666532 1111 22222334333 5667654 445
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275 204 EMIDAGCYPDGGTAKVLISACSSEDQIEQ 232 (271)
Q Consensus 204 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 232 (271)
.+++.|..+|..+ .+ ......|+.+-
T Consensus 291 ~Ll~~GAd~n~~~--~L-~~A~~~~~~~i 316 (337)
T 4g8k_A 291 LLCKRGASTDCGD--LV-MTARRNYDHSL 316 (337)
T ss_dssp HHHTTSCSSTTCC--HH-HHHHHTTCHHH
T ss_pred HHHHCCCCCCCCC--HH-HHHHHcCCHHH
Confidence 5667787777543 22 33344566543
No 390
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=22.17 E-value=1e+02 Score=21.08 Aligned_cols=20 Identities=0% Similarity=-0.258 Sum_probs=10.9
Q ss_pred chHHHHHH-hcCHHHHHHHHH
Q 036275 44 PNLFVFIF-SIYFSDAHAVFE 63 (271)
Q Consensus 44 y~~ll~~~-~g~~~~A~~~~~ 63 (271)
++.+..+. .|+.+.+..+++
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~ 26 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLD 26 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 44455555 666665555554
No 391
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.07 E-value=5.3e+02 Score=25.18 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036275 160 IEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVR 238 (271)
Q Consensus 160 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 238 (271)
.++..+.|.++.+- +.+ |.......+..-...+++-.|++++.++.+. .|+...|..+++.+...|. +....+.+
T Consensus 1265 ~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~w-~h~~~~~~ 1340 (1354)
T 3lxu_X 1265 LAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALGH-EHIRTVIN 1340 (1354)
T ss_dssp HHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHSC-HHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 34445555555543 111 2223333333344688899999999998876 3788888888887776664 33334444
Q ss_pred HH
Q 036275 239 TM 240 (271)
Q Consensus 239 ~~ 240 (271)
++
T Consensus 1341 ~~ 1342 (1354)
T 3lxu_X 1341 RM 1342 (1354)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 392
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=21.84 E-value=1.1e+02 Score=16.75 Aligned_cols=13 Identities=15% Similarity=-0.089 Sum_probs=6.4
Q ss_pred cCCCHHHHHHHHH
Q 036275 156 RGGFIEKMEGLFQ 168 (271)
Q Consensus 156 ~~g~~~~a~~~~~ 168 (271)
+.|++.+|+++++
T Consensus 36 k~gDI~~aLD~lq 48 (52)
T 1q02_A 36 KNYDIGAALDTIQ 48 (52)
T ss_dssp TTTCHHHHHHHHT
T ss_pred ccCCHHHHHHHhh
Confidence 4455555555443
No 393
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.39 E-value=2.2e+02 Score=20.06 Aligned_cols=114 Identities=8% Similarity=0.039 Sum_probs=60.3
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275 125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE 204 (271)
Q Consensus 125 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (271)
.+.+..+++.+.+.|+-.|..--...+....+.|.+ ....+-.++..+|+. ..+....+..+......+.|..+++.
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~--~~~I~~al~~~~~~de~e~a~~l~~K 125 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID--DNIAEDALILYTDKLQVEKGVTLAEK 125 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC--HHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC--HHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 345667778888888766665556666666654433 345666777788874 33444444322112223445555554
Q ss_pred HH-HCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHH
Q 036275 205 MI-DAGCYPDGGTAKVLISACSSEDQ-IEQVTTLVRTMH 241 (271)
Q Consensus 205 m~-~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 241 (271)
-. ...-.++.....-+++.+...|- ++.+..+++.+.
T Consensus 126 k~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 126 LANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 32 22112223344455555555554 445555665554
No 394
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.97 E-value=2.2e+02 Score=19.85 Aligned_cols=152 Identities=16% Similarity=0.072 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275 73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152 (271)
Q Consensus 73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 152 (271)
+...-...+.++.+.+..+. ...+-++.. .++...-...+.++...++.+. ...+..+.. .++..+-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHH
Confidence 44444444455555444322 222223332 3355555555566666665433 333333333 245555566666
Q ss_pred HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275 153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232 (271)
Q Consensus 153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 232 (271)
++.+.|+.+....+.. +.. .++...-...+.++...++. ++...+..+.. .++..+-...+.++...|+.+
T Consensus 99 aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~~- 169 (201)
T 3ltj_A 99 ALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGER- 169 (201)
T ss_dssp HHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHH-
T ss_pred HHHHhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCchh-
Confidence 6666666543333333 332 24555556666666666654 23333444433 245555556666666666543
Q ss_pred HHHHHHHHH
Q 036275 233 VTTLVRTMH 241 (271)
Q Consensus 233 a~~~~~~~~ 241 (271)
+...+..+.
T Consensus 170 ~~~~L~~~l 178 (201)
T 3ltj_A 170 VRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 395
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=20.91 E-value=2.1e+02 Score=19.62 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275 147 YNILINIYGRGGFIEKMEGLFQSLPAK 173 (271)
Q Consensus 147 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 173 (271)
...-+..+++.|+.+.+...+..+...
T Consensus 96 ~c~~lE~~~~~~~~~~~~~~l~~l~~e 122 (153)
T 3us6_A 96 SCVAFRNFCEEQNIDACRRCLQQVKQE 122 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455666667777777766666653
No 396
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=20.82 E-value=2.1e+02 Score=20.27 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=55.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHcC
Q 036275 83 AYSKTGNVAKCEGVINQMHKSGLKPDTF--VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI---STYNILINIYGRG 157 (271)
Q Consensus 83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~ 157 (271)
..++.|+.+.+. .+.+.|..++.. .-.+.+...+..|+.+-+..+ .+.|..++. ..-.+.+...+..
T Consensus 15 ~A~~~g~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 15 KATQYGIYERCR----ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY----ISKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHHcCChHHHH----HHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHH----HHcCCcchhhcCCcCCChhHHHHHc
Confidence 345677765554 444555544332 122456667788887655444 444433221 1112344555566
Q ss_pred CCHHHHHHHHHhchhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036275 158 GFIEKMEGLFQSLPAKRLKPD---VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213 (271)
Q Consensus 158 g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 213 (271)
|+.+-+..+++ .|..++ ....+. +...+..|+.+ +++.+.+.|..++
T Consensus 87 ~~~~~v~~Ll~----~g~~~~~~~~~g~t~-l~~A~~~~~~~----~~~~Ll~~~~~~~ 136 (240)
T 3eu9_A 87 GHLSMVVQLMK----YGADPSLIDGEGCSC-IHLAAQFGHTS----IVAYLIAKGQDVD 136 (240)
T ss_dssp TCHHHHHHHHH----TTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred CCHHHHHHHHH----cCCCCcccCCCCCCH-HHHHHHcCHHH----HHHHHHhcCCCcc
Confidence 77665555544 343333 222233 33445667765 4444555555543
No 397
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.52 E-value=1.4e+02 Score=19.87 Aligned_cols=45 Identities=9% Similarity=-0.065 Sum_probs=18.7
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 036275 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM 163 (271)
Q Consensus 116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 163 (271)
|...+..++.+-|.++++...+.| +...|.+++-.|...=+++-+
T Consensus 39 ietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvV 83 (125)
T 3qil_A 39 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 83 (125)
T ss_dssp HHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHH
Confidence 333444444444444444444433 333344444444433333333
No 398
>4gt9_A TS, tsase, thymidylate synthase THYX; flavin-dependent thymidylate synthase, TM0449, FAD, DUMP, 5, methylenetetrahydrofolate, transferase; HET: FAD UMP MEF; 1.39A {Thermotoga maritima} PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 1o26_A* 4gta_A* 4gtb_A* 4gtl_A* 3g4a_A* 3g4c_A* 4gtd_A* 4gtc_A* 4gte_A* 4gtf_A* 3n0b_A* 3n0c_A*
Probab=20.18 E-value=2.6e+02 Score=20.84 Aligned_cols=60 Identities=10% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHCCCC-------------------CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHH
Q 036275 196 RRCLEIFEEMIDAGCY-------------------PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY 255 (271)
Q Consensus 196 ~~a~~~~~~m~~~~~~-------------------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 255 (271)
+.+.+.+.+|++.|+. -|...+..++..=...+--.+..++...|.+.-....+.++.++
T Consensus 139 ~~a~~~Y~~ll~~Gva~E~AR~vLP~a~~T~~~~T~NlRsl~hfi~LR~~~~AQ~EIR~lA~~m~~~l~~~~P~~~~a~ 217 (232)
T 4gt9_A 139 DKAYRTYLELIESGVPREVARIVLPLNLYTRFFWTVNARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCPWTFEAF 217 (232)
T ss_dssp HHHHHHHHHHHHTTCCHHHHGGGSCTTBEEEEEEEEEHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHhhcccceEEEEEEEEeHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHChHHHHHH
Confidence 4566677777777654 34556666666533333334556666666555444445555543
No 399
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.01 E-value=1e+02 Score=24.22 Aligned_cols=153 Identities=8% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275 78 MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG 157 (271)
Q Consensus 78 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 157 (271)
...+...+..|+.+.+..+++. ...+......-.+.+...+..|+.+ +.+.+.+.|..++...-.+.+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVD----TAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHH----HHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHH----HHHHHHHCCCCccccCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHhchhCCCCCCH--------------------HHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHH
Q 036275 158 GFIEKMEGLFQSLPAKRLKPDV--------------------VTWTSRLAAYSRKK--LYRRCLEIFEEMIDAGCYPDGG 215 (271)
Q Consensus 158 g~~~~a~~~~~~m~~~g~~~~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~ 215 (271)
|+.+-+..+++.....|..++. .-.+.|..+ +..| +.+-+..+++. ...+.....
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~~~v~~Ll~~--ga~~~~~d~ 171 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC-VGLGPEYLEMIKILVQL--GASPTAKDK 171 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH-HHSCGGGHHHHHHHHHH--TCCTTCCCT
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH-HHcCCchHHHHHHHHHc--CCCCcccCC
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHH
Q 036275 216 TAKVLISACSSEDQIEQVTTLVRT 239 (271)
Q Consensus 216 ~~~~l~~~~~~~g~~~~a~~~~~~ 239 (271)
.-...+...+..|+.+-+..+++.
T Consensus 172 ~g~t~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 172 ADETPLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhc
Done!