BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036277
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 94 ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICA 153
I F+ RN P A GF+ Y +FI A + FGTTG+ + +EI A
Sbjct: 2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFP--SFGTTGSTDVRKREIAA 59
Query: 154 FLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAI 213
FL +T+ G+ A GP AWG C+ E +PS +YC S + YPC PG YYGRG I
Sbjct: 60 FLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR--YPCAPGKSYYGRGPI 117
Query: 214 PIYW 217
+ W
Sbjct: 118 QLSW 121
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 93 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC 152
++S QF+ RN A GF+ Y +F+ A + GFG TG+ + +++
Sbjct: 2 SVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFP--GFGATGSTDARKRDVA 59
Query: 153 AFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 212
AFLA +T+ G+ A G AWG C+ E + YC S + +PC PG YYGRG
Sbjct: 60 AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQ--WPCAPGKRYYGRGP 117
Query: 213 IPI 215
I +
Sbjct: 118 IQL 120
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 103 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKT 162
F+ RN P GF+ Y +F+TA + GFGTTG + +E+ AFLA +T
Sbjct: 11 FDQLLKHRNDPACEGKGFYSYNAFVTAARSFG--GFGTTGDTNTRKREVAAFLAQTSHET 68
Query: 163 SCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPI---YWYA 219
+ G + GP AWG C+ E S YCD PC G YYGRG I + Y YA
Sbjct: 69 TGGAAGSPDGPYAWGYCFVTERDKSNKYCDPG----TPCPAGKSYYGRGPIQLTHNYNYA 124
Query: 220 CTFYIFIIVLLFKFQLLDMNLPCNF 244
+ L+ L+ + +F
Sbjct: 125 QAGRALGVDLINNPDLVARDAVISF 149
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 102 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 161
QF N HAVGF+ Y +FITA + FG TG + KEI AF +
Sbjct: 10 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAAFFGQTSHE 67
Query: 162 TSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYW 217
T+ G+ A G WG CY E+ S +C DS +PC PG YYGRG + + W
Sbjct: 68 TTGGWSGAPDGANTWGYCYKEEIDKSDPHC-DSNNLEWPCAPGKFYYGRGPMMLSW 122
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 102 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 161
QF N HAVGF+ Y +FITA + FG TG + KEI AF +
Sbjct: 13 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAAFFGQTSHE 70
Query: 162 TSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYW 217
T+ G+ A G WG CY E+ S +C DS +PC PG YYGRG + + W
Sbjct: 71 TTGGWSGAPDGANTWGYCYKEEIDKSDPHC-DSNNLEWPCAPGKFYYGRGPMMLSW 125
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 103 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKT 162
F+ RN GF+ Y +FITA + FGTTG + +E+ AFLA +T
Sbjct: 12 FDQLLKHRNDQACEGKGFYSYNAFITAARSF--AAFGTTGDSNTRKREVAAFLAQTSHET 69
Query: 163 SCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPI---YWYA 219
+ G + GP AWG C+ E S YCD S PC+ G YYGRG I + Y Y
Sbjct: 70 TGGAATSPDGPYAWGYCFVTERDKSNRYCDGS----GPCSAGKSYYGRGPIQLTHNYNYN 125
Query: 220 CTFYIFIIVLLFKFQLLDMNLPCNF 244
+ L+ L+ + +F
Sbjct: 126 AAGRALGVDLINNPDLVARDAVVSF 150
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 93 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC 152
++S QF+ RN A GF+ Y +F+ A + GFGTTG+ + +E+
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFS--GFGTTGSADVQKREVA 58
Query: 153 AFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 212
AFLA +T+ G+ A G AWG C+ E S YC S + +PC PG YYGRG
Sbjct: 59 AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGP 116
Query: 213 IPI---YWYACTFYIFIIVLLFKFQLLDMNLPCNF 244
I + Y Y + LL L+ + +F
Sbjct: 117 IQLSHNYNYGPAGRAIGVDLLANPDLVATDATVSF 151
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 93 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC 152
++S QF+ RN A GF+ Y +F+ A + GFGTTG+ + +E+
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVA 58
Query: 153 AFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 212
AFLA +T+ G+ A G AWG C+ E S YC S + +PC PG YYGRG
Sbjct: 59 AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGP 116
Query: 213 IPI---YWYACTFYIFIIVLLFKFQLLDMNLPCNF 244
I + Y Y + LL L+ + F
Sbjct: 117 IQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGF 151
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 102 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 161
QF N HAVGF+ Y +FITA + FG TG + KEI AF +
Sbjct: 12 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAAFFGQTSHE 69
Query: 162 TSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYW 217
T+ G+ A G WG CY + S +C DS +PC PG YYGRG + + W
Sbjct: 70 TTGGWSGAPDGANTWGYCYKEAIDKSDPHC-DSNNLEWPCAPGKFYYGRGPMMLSW 124
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 103 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKT 162
FE RN A GF+ Y++F+ A + G TG + +E+ AFL +T
Sbjct: 67 FERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFG--GTGNTETRKREVAAFLGQTSHET 124
Query: 163 SCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPI 215
+ G+ A GP +WG C+ E +P YC S + +PC PG +YYGRG I +
Sbjct: 125 TGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPE--WPCAPGRKYYGRGPIQL 175
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 17/99 (17%)
Query: 119 GFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGL 178
GF+ Y +FI A Y GFGTTG+ K +E+ AF A+V +T GL
Sbjct: 26 GFYTYNAFIAAANAYS--GFGTTGSNDVKKRELAAFFANVMHETG-------------GL 70
Query: 179 CYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYW 217
CY +E +P +YC S T+PCT G Y+GRG + + W
Sbjct: 71 CYINEKNPPINYCQSSS--TWPCTSGKSYHGRGPLQLSW 107
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 25/118 (21%)
Query: 102 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 161
QF+ F RN+ F+ Y A Y GF TG+ K +E AFLA+VG +
Sbjct: 7 QFDQMFPSRNS-------FYTYSGLTAALSAYP--GFSNTGSDTVKKQEAAAFLANVGHE 57
Query: 162 TSCGYGVATGGPLAWGLCYNHEMSPSQ--SYCDDSYKYTYPCTPGAEYYGRGAIPIYW 217
T GL Y E + + YCD S Y P +YYGRG + + W
Sbjct: 58 TG-------------GLVYVVEQNTANYPHYCDASQPYGCPAG-NDKYYGRGPVQLSW 101
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 25/118 (21%)
Query: 102 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 161
QF F RN F+ Y+ A Y F TG+ K +E AFLA+V +
Sbjct: 68 QFNQMFPNRNA-------FYTYKGLTDALSAYP--AFAKTGSDEVKKREAAAFLANVSHQ 118
Query: 162 TSCGYGVATGGPLAWGLCYNHEMSPSQ--SYCDDSYKYTYPCTPGAEYYGRGAIPIYW 217
T GL Y E++ + YCD + Y P A YYGRG I + W
Sbjct: 119 TG-------------GLFYIKEVNEANYPHYCDTTQSYGCPAGQAA-YYGRGPIQLSW 162
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 25/118 (21%)
Query: 102 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 161
QF F RN F+ Y+ A Y F TG+ K +E AFLA+V +
Sbjct: 68 QFNQMFPNRNA-------FYTYKGLTDALSAYP--AFAKTGSDEVKKREAAAFLANVSHE 118
Query: 162 TSCGYGVATGGPLAWGLCYNHEMSPSQ--SYCDDSYKYTYPCTPGAEYYGRGAIPIYW 217
T GL Y E++ + YCD + Y P A YYGRG I + W
Sbjct: 119 TG-------------GLFYIKEVNEANYPHYCDTTQSYGCPAGQAA-YYGRGPIQLSW 162
>pdb|3G6O|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
pdb|3G6O|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
Length = 505
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 152 CAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP 186
C +L ++G + S + GG L WGL H MSP
Sbjct: 248 CEYLTNMGVRASMSISIVVGGKL-WGLFSCHHMSP 281
>pdb|3C2W|A Chain A, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|B Chain B, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|C Chain C, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|D Chain D, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|E Chain E, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|F Chain F, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|G Chain G, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|H Chain H, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3NHQ|A Chain A, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|B Chain B, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|C Chain C, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|D Chain D, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|E Chain E, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|F Chain F, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|G Chain G, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|H Chain H, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NOP|C Chain C, Light-Induced Intermediate Structure L1 Of Pseudomonas
Aeruginosa Bacteriophytochrome
pdb|3NOT|C Chain C, Light-Induced Intermediate Structure L2 Of P. Aeruginosa
Bacteriophytochrome
pdb|3NOU|C Chain C, Light-Induced Intermediate Structure L3 Of P. Aeruginosa
Bacteriophytochrome
Length = 505
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 152 CAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP 186
C +L ++G + S + GG L WGL H MSP
Sbjct: 248 CEYLTNMGVRASMSISIVVGGKL-WGLFSCHHMSP 281
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 114 VAHAVGFWDYQSFITATVK--------YQPLGFGTTGTKLDK---MKEICAFLAHVGCKT 162
+ H G + +T +K Y LG G ++K +K++ + VGC
Sbjct: 296 IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE 355
Query: 163 SCGYGVATGGPL-AWGLCYNHEM 184
C Y V G L +WG N+++
Sbjct: 356 VCSYAVTIDGKLYSWGSGVNNQL 378
>pdb|3IBR|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
pdb|3IBR|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
Length = 505
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 152 CAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP 186
C +L + G + S + GG L WGL H SP
Sbjct: 248 CEYLTNXGVRASXSISIVVGGKL-WGLFSCHHXSP 281
>pdb|3AI7|A Chain A, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|B Chain B, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|C Chain C, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|D Chain D, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|E Chain E, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|F Chain F, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|G Chain G, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|H Chain H, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
Length = 831
Score = 27.3 bits (59), Expect = 7.4, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 124 QSFITATVKYQPLG-FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNH 182
+ F VK++ +G +GTT + I F+A G T G GGP
Sbjct: 50 EPFTREDVKHRLVGHWGTTPGLNFLIGHINRFIADHGQNTVIIMGPGHGGP--------- 100
Query: 183 EMSPSQSYCDDSYKYTYP 200
SQSY D +Y T+P
Sbjct: 101 -AGTSQSYLDGTYTETFP 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,129,154
Number of Sequences: 62578
Number of extensions: 278398
Number of successful extensions: 364
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 20
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)