Query 036277
Match_columns 246
No_of_seqs 172 out of 588
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 11:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4742 Predicted chitinase [G 100.0 3.9E-55 8.5E-60 398.9 12.5 179 53-237 22-201 (286)
2 PF00182 Glyco_hydro_19: Chiti 100.0 6.3E-47 1.4E-51 336.6 10.4 134 97-237 1-134 (232)
3 cd00325 chitinase_glyco_hydro_ 100.0 8.2E-46 1.8E-50 329.5 10.3 127 98-229 1-127 (230)
4 cd00442 lysozyme_like lysozyme 98.8 7.4E-10 1.6E-14 86.3 1.2 50 152-226 1-50 (105)
5 COG3179 Predicted chitinase [G 98.3 3E-07 6.4E-12 81.6 2.4 119 97-236 3-142 (206)
6 PF00187 Chitin_bind_1: Chitin 95.6 0.0014 2.9E-08 45.0 -1.8 24 66-90 3-26 (40)
7 smart00270 ChtBD1 Chitin bindi 94.7 0.019 4.2E-07 39.1 1.6 23 67-90 2-24 (38)
8 cd00035 ChtBD1 Chitin binding 90.8 0.15 3.2E-06 34.7 1.5 22 67-89 2-23 (40)
9 PF02950 Conotoxin: Conotoxin; 49.8 10 0.00023 27.5 1.5 12 73-84 54-67 (75)
10 PF09447 Cnl2_NKP2: Cnl2/NKP2 46.1 17 0.00037 27.6 2.1 23 90-112 12-34 (67)
11 PF15182 OTOS: Otospiralin 35.0 32 0.00069 26.4 2.1 37 118-166 25-62 (69)
12 PF05473 Herpes_UL45: UL45 pro 31.8 44 0.00094 29.7 2.8 10 72-81 81-90 (200)
13 PF04202 Mfp-3: Foot protein 3 28.8 36 0.00078 26.2 1.5 16 35-50 1-16 (71)
14 COG3979 Uncharacterized protei 27.4 22 0.00048 31.1 0.2 110 93-222 56-181 (181)
15 PF00432 Prenyltrans: Prenyltr 23.1 1.1E+02 0.0024 20.2 2.9 26 147-173 2-27 (44)
16 PF02088 Ornatin: Ornatin; In 22.9 37 0.00079 23.6 0.6 29 181-212 7-35 (41)
17 cd08327 CARD_RAIDD Caspase act 21.7 56 0.0012 25.9 1.5 39 96-134 34-80 (94)
18 PF07359 LEAP-2: Liver-express 20.6 43 0.00094 26.3 0.6 18 72-91 50-67 (77)
No 1
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=3.9e-55 Score=398.92 Aligned_cols=179 Identities=35% Similarity=0.572 Sum_probs=160.6
Q ss_pred HHHhhCCCCccceeEEeecCCcCCCCCCCCCCCccccCCCCcccccCHHHHHHHHcCCCCCCccCCcccchHHHHHhhhc
Q 036277 53 AVSLANGDESEKVIVKKVKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVK 132 (246)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~ag~a~C~~g~cCs~~~~YCc~~~V~siiT~~~Fd~lfp~Rn~~~c~a~GFYTY~aFI~AA~~ 132 (246)
++.++..++.....+..+.++..|..| +|+++.++|+.++|+++||+++||+||+++++++||++|||||++||+|+++
T Consensus 22 ~~~~~~~q~~~~~~~~~~~~~~~c~~g-~c~~~~~~~p~~~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~s 100 (286)
T KOG4742|consen 22 SSSTVASQNCGASNTTPPYCKFGCGPG-PCSGPGPPNPASKIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARS 100 (286)
T ss_pred HHHhhhcccCCCCccccccccCCCCCC-CCCCCCCCCCcccccccccHHHHHHHhccccCCCCCCCCCccccHHHHHHHh
Confidence 344444444322236677899999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCcchhhhHHHHHHhhhhccCCCCccccCCCCccccceeeeecCC-CCCCcCCCCCCCCCCCCCCccccCC
Q 036277 133 YQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRG 211 (246)
Q Consensus 133 Fp~~~FgttG~~~~~KRElAAFLAhvshET~gGw~~Ap~Gp~aWGlcy~eEi~~-~~~YC~~s~~~~yPCapGk~YyGRG 211 (246)
|| +|++||+..+.|||+||||||++|||+|||..+++|||+|+|||++|+++ ...||+.+++..|||++||.|||||
T Consensus 101 fp--~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y~GRG 178 (286)
T KOG4742|consen 101 FP--EFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEISPSSGRYCDASNQITYPCSPGKSYYGRG 178 (286)
T ss_pred cc--cccccCcccccchhhhhhhhhheecccCcccccCCCccccCcccccccChhhhccCCcccceEeecCCCCcccccC
Confidence 99 99999999999999999999999999999999999999999999999998 7899999875449999999999999
Q ss_pred CCcccccchhHHHHHHHHhhhhhccc
Q 036277 212 AIPIYWYACTFYIFIIVLLFKFQLLD 237 (246)
Q Consensus 212 pIQLSWNYNYg~fs~~v~~~k~~~~~ 237 (246)
|||||||||||++. +.+|.+||+
T Consensus 179 ~iQlsWNyNYG~ag---~alg~dLL~ 201 (286)
T KOG4742|consen 179 PIQLSWNYNYGAAG---KALGLDLLR 201 (286)
T ss_pred cccccccccccHhH---hhcCchhhc
Confidence 99999999999997 455555553
No 2
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=6.3e-47 Score=336.60 Aligned_cols=134 Identities=34% Similarity=0.669 Sum_probs=114.8
Q ss_pred ccCHHHHHHHHcCCCCCCccCCcccchHHHHHhhhccCCCCccccCCcchhhhHHHHHHhhhhccCCCCccccCCCCccc
Q 036277 97 YFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAW 176 (246)
Q Consensus 97 iiT~~~Fd~lfp~Rn~~~c~a~GFYTY~aFI~AA~~Fp~~~FgttG~~~~~KRElAAFLAhvshET~gGw~~Ap~Gp~aW 176 (246)
|||+++||+||||||++.|++++||||++||+|+++|| +|++||+++++||||||||||++|||+|+|...+.++++|
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp--~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~ 78 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFP--AFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAW 78 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTST--TTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGG
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCc--hhccCccHHHHHHHHHhhhcccchhccccccccccccccc
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cceeeeecCCCCCCcCCCCCCCCCCCCCCccccCCCCcccccchhHHHHHHHHhhhhhccc
Q 036277 177 GLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQLLD 237 (246)
Q Consensus 177 Glcy~eEi~~~~~YC~~s~~~~yPCapGk~YyGRGpIQLSWNYNYg~fs~~v~~~k~~~~~ 237 (246)
+||+.+|..+...||+.+. +|||.+|++|||||||||||||||++|++.+ ..+||+
T Consensus 79 gyc~~~e~~~~~~y~~~~~--~~p~~~g~~Y~GRG~iQLT~~~NY~~~g~~l---g~dl~~ 134 (232)
T PF00182_consen 79 GYCYKREKGANSDYCNRNG--NYPCGDGKKYYGRGPIQLTWNYNYGAFGEAL---GLDLLN 134 (232)
T ss_dssp TTS-SB-SS-SSGG--TTS--SS--TTTTGGS-BTTTTB-SHHHHHHHHHHH---TS-TTT
T ss_pred ccccccccCCccccccCcc--CccCCCCCeEecccccccchhhhHHHHHHHh---CCcccc
Confidence 9999999998899999863 7999999999999999999999999999765 334553
No 3
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=8.2e-46 Score=329.55 Aligned_cols=127 Identities=41% Similarity=0.746 Sum_probs=121.5
Q ss_pred cCHHHHHHHHcCCCCCCccCCcccchHHHHHhhhccCCCCccccCCcchhhhHHHHHHhhhhccCCCCccccCCCCcccc
Q 036277 98 FQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWG 177 (246)
Q Consensus 98 iT~~~Fd~lfp~Rn~~~c~a~GFYTY~aFI~AA~~Fp~~~FgttG~~~~~KRElAAFLAhvshET~gGw~~Ap~Gp~aWG 177 (246)
||+++||+||||||+..||+++||||++||+|+++|| +|+++|+++++||||||||||++|||+|+|..++.++++||
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp--~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g 78 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFP--GFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWG 78 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhcc--ccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCC
Confidence 6899999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCCcCCCCCCCCCCCCCCccccCCCCcccccchhHHHHHHHH
Q 036277 178 LCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVL 229 (246)
Q Consensus 178 lcy~eEi~~~~~YC~~s~~~~yPCapGk~YyGRGpIQLSWNYNYg~fs~~v~ 229 (246)
||+++|+++...+|.. .+|||.+|++|||||||||||||||++|++++.
T Consensus 79 ~c~~~e~~~~~~~~~~---~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg 127 (230)
T cd00325 79 YCDKSETGPPSSYCDP---AQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALG 127 (230)
T ss_pred ccccccCCCccccccc---CCCCCCcccccccCCceeeeehhhHHHHHHHhC
Confidence 9999999988888987 369999999999999999999999999997753
No 4
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=98.85 E-value=7.4e-10 Score=86.30 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=39.4
Q ss_pred HHHHhhhhccCCCCccccCCCCccccceeeeecCCCCCCcCCCCCCCCCCCCCCccccCCCCcccccchhHHHHH
Q 036277 152 CAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFI 226 (246)
Q Consensus 152 AAFLAhvshET~gGw~~Ap~Gp~aWGlcy~eEi~~~~~YC~~s~~~~yPCapGk~YyGRGpIQLSWNYNYg~fs~ 226 (246)
|+|+++.+|||.+++....+ .|| ||.+|+.|||||+||++|||||+...+
T Consensus 1 a~~~~i~~~E~~~~~~~~~~-----------------Gy~--------~~~~~~~~~~~G~~q~~~~~~~~~~~~ 50 (105)
T cd00442 1 AIIDMLASSEGTDLKAYKDR-----------------GHG--------TLNPGERGYGIGLYQLTSRWSDAYRAR 50 (105)
T ss_pred ChhhhhhhcccCCCcccccC-----------------CCC--------CCCCCCcccccCceeeeeccCcccccc
Confidence 68999999999955432221 244 888899999999999999999996653
No 5
>COG3179 Predicted chitinase [General function prediction only]
Probab=98.31 E-value=3e-07 Score=81.56 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=65.6
Q ss_pred ccCHHHHHHHHcCCCCCCccCCcccchHHHHHhhhc-cCCCCccccCCcchhhhHHHHHHhhhhccCCCCccccCCCCcc
Q 036277 97 YFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVK-YQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLA 175 (246)
Q Consensus 97 iiT~~~Fd~lfp~Rn~~~c~a~GFYTY~aFI~AA~~-Fp~~~FgttG~~~~~KRElAAFLAhvshET~gGw~~Ap~Gp~a 175 (246)
.||+.+|.+|||++-. +| ..++.|+.. .. .|+. + .+...|+||||+.|||+|=---...=-|.
T Consensus 3 ~i~e~~~~ki~p~a~k------~~---~~v~~al~~~l~--~~gi----~-~p~r~AmFlAQ~~HESggf~rl~EnlnYS 66 (206)
T COG3179 3 TITEVDLRKIFPKARK------EF---VDVIVALQPALD--EAGI----T-TPLRQAMFLAQVMHESGGFTRLDENLNYS 66 (206)
T ss_pred chhHHHHHHhcchhhh------hh---HHHHHHHHHHHH--HhcC----C-CHHHHHHHHHHHhhhcCCceeehhhcchH
Confidence 5899999999998643 22 334444432 22 5654 3 37779999999999999310000000011
Q ss_pred c-------c-----ceeeeecCCC------CCCcCCCCCCCCCC--CCCCccccCCCCcccccchhHHHHHHHHhhhhhc
Q 036277 176 W-------G-----LCYNHEMSPS------QSYCDDSYKYTYPC--TPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQL 235 (246)
Q Consensus 176 W-------G-----lcy~eEi~~~------~~YC~~s~~~~yPC--apGk~YyGRGpIQLSWNYNYg~fs~~v~~~k~~~ 235 (246)
| + +-+-+|+... ..|=.. -.+=|= .+|-.|.|||-|||+..-||..+.++ ++-+|
T Consensus 67 aq~L~~tf~~r~~~~~~a~~~~g~p~aian~~y~~R--lGN~~e~sgDGw~yRgrg~iQiTGrdNY~~~g~a---lg~dl 141 (206)
T COG3179 67 AQGLLQTFPKRFPDFRYAREIAGNPPAIANRVYGTR--LGNGPEKSGDGWLYRGRGLIQITGRDNYRRCGRA---LGLDL 141 (206)
T ss_pred HHHHHHhccccCCchhhhhhhccChHHHHhhhhccc--ccCCCCCCCCceeeccCcceeeecchHHHHHHHh---hCCCc
Confidence 0 0 0111111100 011000 001111 13568999999999999999999965 55555
Q ss_pred c
Q 036277 236 L 236 (246)
Q Consensus 236 ~ 236 (246)
.
T Consensus 142 v 142 (206)
T COG3179 142 V 142 (206)
T ss_pred c
Confidence 4
No 6
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e.g. solanaceous lectins of tomato and potato, plant endochitinases, the wound-induced proteins: hevein, win1 and win2, and the Kluyveromyces lactis killer toxin alpha subunit) contain this domain []. The domain may occur in one or more copies and is thought to be involved in recognition or binding of chitin subunits [, ]. In chitinases, as well as in the potato wound-induced proteins, the 43-residue domain directly follows the signal sequence and is therefore at the N terminus of the mature protein; in the killer toxin alpha subunit it is located in the central section of the protein. ; GO: 0008061 chitin binding; PDB: 9WGA_B 2WGC_B 1ULK_B 2UVO_B 1WGC_B 2CWG_A 2X3T_C 4AML_B 7WGA_B 1ZWU_A ....
Probab=95.60 E-value=0.0014 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.619 Sum_probs=18.7
Q ss_pred eEEeecCCcCCCCCCCCCCCccccC
Q 036277 66 IVKKVKGKKVCIKGWECPTWSKFCC 90 (246)
Q Consensus 66 ~~~~~ag~a~C~~g~cCs~~~~YCc 90 (246)
.++.+++++.||+++|||+| .||+
T Consensus 3 ~CG~~~~~~~Cp~~~CCS~~-G~CG 26 (40)
T PF00187_consen 3 RCGRQAGGATCPNGLCCSQY-GYCG 26 (40)
T ss_dssp BSSGGGTTBBSGGG-EEETT-SBEE
T ss_pred ccccCcCCCcCCCCCccCCC-Cccc
Confidence 35678899999999999998 5554
No 7
>smart00270 ChtBD1 Chitin binding domain.
Probab=94.67 E-value=0.019 Score=39.05 Aligned_cols=23 Identities=26% Similarity=0.647 Sum_probs=18.8
Q ss_pred EEeecCCcCCCCCCCCCCCccccC
Q 036277 67 VKKVKGKKVCIKGWECPTWSKFCC 90 (246)
Q Consensus 67 ~~~~ag~a~C~~g~cCs~~~~YCc 90 (246)
++.++|++.|+.+.|||+| .||+
T Consensus 2 CG~~~g~~~C~~~~CCS~~-G~CG 24 (38)
T smart00270 2 CGSQAGGKVCPNNLCCSQF-GYCG 24 (38)
T ss_pred CcCCCCCCcCCCCCccCCC-cCcc
Confidence 4678899999999999997 4443
No 8
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K.lactis killer toxin alpha subunit, occurs singly or multiply
Probab=90.77 E-value=0.15 Score=34.70 Aligned_cols=22 Identities=23% Similarity=0.652 Sum_probs=18.2
Q ss_pred EEeecCCcCCCCCCCCCCCcccc
Q 036277 67 VKKVKGKKVCIKGWECPTWSKFC 89 (246)
Q Consensus 67 ~~~~ag~a~C~~g~cCs~~~~YC 89 (246)
++.++|++.|+.+.|||+| .||
T Consensus 2 Cg~~~~~~~C~~~~CCS~~-G~C 23 (40)
T cd00035 2 CGRQAGGGGCPPGLCCSQF-GYC 23 (40)
T ss_pred CCccCCCCcCCCCcccccc-ccc
Confidence 4678899999999999997 444
No 9
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=49.79 E-value=10 Score=27.54 Aligned_cols=12 Identities=17% Similarity=0.327 Sum_probs=6.3
Q ss_pred CcCC--CCCCCCCC
Q 036277 73 KKVC--IKGWECPT 84 (246)
Q Consensus 73 ~a~C--~~g~cCs~ 84 (246)
|..| .+..|||.
T Consensus 54 g~~C~~~~~~CC~~ 67 (75)
T PF02950_consen 54 GSYCCKRNSECCSG 67 (75)
T ss_dssp TSB-BTTTTCBSSS
T ss_pred CCcCCCCCCCCCCC
Confidence 5667 33566765
No 10
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=46.09 E-value=17 Score=27.55 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=19.9
Q ss_pred CCCCcccccCHHHHHHHHcCCCC
Q 036277 90 CNETISDYFQVYQFENFFSKRNT 112 (246)
Q Consensus 90 c~~~V~siiT~~~Fd~lfp~Rn~ 112 (246)
.++.+.+|||-++|.++||++..
T Consensus 12 s~s~L~~iisl~qF~~LFPr~~~ 34 (67)
T PF09447_consen 12 SPSSLPDIISLEQFRKLFPRRLR 34 (67)
T ss_pred CcCccccccCHHHHHHHccccCC
Confidence 35789999999999999998765
No 11
>PF15182 OTOS: Otospiralin
Probab=34.97 E-value=32 Score=26.36 Aligned_cols=37 Identities=24% Similarity=0.701 Sum_probs=28.6
Q ss_pred CcccchHHHHHhhhccCCCCccccCCcchhhhHHH-HHHhhhhccCCCCc
Q 036277 118 VGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC-AFLAHVGCKTSCGY 166 (246)
Q Consensus 118 ~GFYTY~aFI~AA~~Fp~~~FgttG~~~~~KRElA-AFLAhvshET~gGw 166 (246)
.+||+|-.+.+...+|+ +-.|+| +||||.---++=|+
T Consensus 25 sDFW~YveyFrtlGAY~------------~indmARtfFAh~plG~tLGy 62 (69)
T PF15182_consen 25 SDFWNYVEYFRTLGAYN------------QINDMARTFFAHFPLGDTLGY 62 (69)
T ss_pred hHHHHHHHHHHHhccHH------------HHHHHHHHHHhhCcccccccc
Confidence 46999999999999998 667776 69999866555343
No 12
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=31.84 E-value=44 Score=29.70 Aligned_cols=10 Identities=50% Similarity=1.036 Sum_probs=6.2
Q ss_pred CCcCCCCCCC
Q 036277 72 GKKVCIKGWE 81 (246)
Q Consensus 72 g~a~C~~g~c 81 (246)
+...||++|=
T Consensus 81 ~~~~CP~~Wi 90 (200)
T PF05473_consen 81 GCGPCPKGWI 90 (200)
T ss_pred cCCCCCccce
Confidence 4566777664
No 13
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=28.76 E-value=36 Score=26.23 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=10.0
Q ss_pred ccCcchHHHHHHHHHH
Q 036277 35 MKNGSVAMTLTVALVL 50 (246)
Q Consensus 35 ~~~~~~s~~~~~~~~~ 50 (246)
|.|-||++.++++||.
T Consensus 1 mnn~Si~VLlaLvLIg 16 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIG 16 (71)
T ss_pred CCchhHHHHHHHHHHh
Confidence 6777887665544443
No 14
>COG3979 Uncharacterized protein contain chitin-binding domain type 3 [General function prediction only]
Probab=27.37 E-value=22 Score=31.06 Aligned_cols=110 Identities=9% Similarity=-0.071 Sum_probs=67.9
Q ss_pred CcccccCHHHHHHHHcCCCCCCccCCcccchHHHHHhhhccCCCCccccCC--cchhhhHHHHHHhhhhccCCCCccccC
Q 036277 93 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGT--KLDKMKEICAFLAHVGCKTSCGYGVAT 170 (246)
Q Consensus 93 ~V~siiT~~~Fd~lfp~Rn~~~c~a~GFYTY~aFI~AA~~Fp~~~FgttG~--~~~~KRElAAFLAhvshET~gGw~~Ap 170 (246)
+++.+.-+..|..+...+.. =+.|..+..+...++ ..+.-|. ....+++.+--.+++..++++.+.
T Consensus 56 ~~~g~~~et~y~~~~~a~~t-------~g~~s~~~~~~~~~~--~~~~~~~~s~p~~~~~~~~~~gd~vt~~g~~~~--- 123 (181)
T COG3979 56 TVEGLAPETEYWTLVEAPDT-------SGNWSAWSRLLTVST--SGCGDGSPSAPAWVKNGVYVVGDVVTYTGGASL--- 123 (181)
T ss_pred EecCcceeeEEEEeeeccCC-------CCccccceeeeeecc--CcCCCCCcCccchhhcCcccccceEEecCcccc---
Confidence 45666666666665554432 256778877777777 6654443 345788888889999999985432
Q ss_pred CCCccccceeeeecCC-------CCCCcCCCC--CCCCCCCC-----CCccccCCCCcccccchhH
Q 036277 171 GGPLAWGLCYNHEMSP-------SQSYCDDSY--KYTYPCTP-----GAEYYGRGAIPIYWYACTF 222 (246)
Q Consensus 171 ~Gp~aWGlcy~eEi~~-------~~~YC~~s~--~~~yPCap-----Gk~YyGRGpIQLSWNYNYg 222 (246)
+..++... ...-|-... ...|+|+. .+.|++||+-|++|.++|+
T Consensus 124 --------~~~~~~~Wt~g~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (181)
T COG3979 124 --------KLYEAKWWTAGQEPGANGAWGPWVWGAATWYTVKDTVGGVQGYFNTGAAQASVLVGYG 181 (181)
T ss_pred --------ccceeeccccCcCCccccceeeeeecccccceEEEEeccccCCcCCcceEEEEecccC
Confidence 22222210 011111110 12355653 4899999999999999974
No 15
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=23.07 E-value=1.1e+02 Score=20.18 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=21.0
Q ss_pred hhhHHHHHHhhhhccCCCCccccCCCC
Q 036277 147 KMKEICAFLAHVGCKTSCGYGVATGGP 173 (246)
Q Consensus 147 ~KRElAAFLAhvshET~gGw~~Ap~Gp 173 (246)
+++++..|+.+.-+ ..|||...|+.+
T Consensus 2 d~~~~~~~l~~~Q~-~dGGf~~~~~~~ 27 (44)
T PF00432_consen 2 DVEKLIRFLLSCQN-PDGGFGGRPGGE 27 (44)
T ss_dssp HHHHHHHHHHHTBB-TTSSBBSSTTSS
T ss_pred CHHHHHHHHHHHCC-CCCCCCCCCCCC
Confidence 57889999999888 667888877654
No 16
>PF02088 Ornatin: Ornatin; InterPro: IPR002463 Ornatin is a potent glycoprotein IIb-IIIa (GP IIb-IIIa) antagonist and platelet aggregation inhibitor []. The protein is 41-52 residues in length and contains the RGD recognition motif common in adhesion proteins, and 6 conserved cysteine residues. The sequences of ornatin isoforms B, C, D and E are highly similar, while isoforms A2 and A3 are less similar, lacking the N-terminal 9 residues. Ornatins share ~40% identity with decorsin, a GP IIb-IIIa antagonist isolated from the leech (Macrobdella decora) [].; GO: 0007155 cell adhesion, 0030193 regulation of blood coagulation, 0005576 extracellular region
Probab=22.94 E-value=37 Score=23.56 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=22.3
Q ss_pred eeecCCCCCCcCCCCCCCCCCCCCCccccCCC
Q 036277 181 NHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 212 (246)
Q Consensus 181 ~eEi~~~~~YC~~s~~~~yPCapGk~YyGRGp 212 (246)
++|.+..++.|.-+. -||.-|+.-++||-
T Consensus 7 ~ke~gqp~~kcrc~g---kpctvgkc~~argd 35 (41)
T PF02088_consen 7 FKESGQPNDKCRCNG---KPCTVGKCNIARGD 35 (41)
T ss_pred hHhcCCCCcccccCC---eeeceeeeeecccC
Confidence 456676678887653 69999999999983
No 17
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=21.74 E-value=56 Score=25.91 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=30.2
Q ss_pred cccCHHHHHHHHcCCCCC--------CccCCcccchHHHHHhhhccC
Q 036277 96 DYFQVYQFENFFSKRNTP--------VAHAVGFWDYQSFITATVKYQ 134 (246)
Q Consensus 96 siiT~~~Fd~lfp~Rn~~--------~c~a~GFYTY~aFI~AA~~Fp 134 (246)
.|||+++.+.|-...... .=|.+|..-|+.|++|...||
T Consensus 34 gIlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e~~ 80 (94)
T cd08327 34 GILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEEFP 80 (94)
T ss_pred CCCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 388999988888655432 126778889999999999887
No 18
>PF07359 LEAP-2: Liver-expressed antimicrobial peptide 2 precursor (LEAP-2); InterPro: IPR009955 This family consists of several mammalian liver-expressed antimicrobial peptide 2 (LEAP-2) sequences. LEAP-2 is a cysteine-rich, and cationic protein. LEAP-2 contains a core structure with two disulphide bonds formed by cysteine residues in relative 1-3 and 2-4 positions. LEAP-2 is synthesised as a 77-residue precursor, which is predominantly expressed in the liver and highly conserved among mammals. The largest native LEAP-2 form of 40 amino acid residues is generated from the precursor at a putative cleavage site for a furin-like endoprotease. In contrast to smaller LEAP-2 variants, this peptide exhibits dose-dependent antimicrobial activity against selected microbial model organisms []. The exact function of this family is unclear.; GO: 0042742 defense response to bacterium; PDB: 2L1Q_A.
Probab=20.64 E-value=43 Score=26.27 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=13.0
Q ss_pred CCcCCCCCCCCCCCccccCC
Q 036277 72 GKKVCIKGWECPTWSKFCCN 91 (246)
Q Consensus 72 g~a~C~~g~cCs~~~~YCc~ 91 (246)
-||.|.+..+|+. .+|-+
T Consensus 50 ~GAsCrd~~EC~T--~lCR~ 67 (77)
T PF07359_consen 50 IGASCRDNSECST--GLCRK 67 (77)
T ss_dssp TTSB-SSGGGBTT--S-EET
T ss_pred CcchhccchhhhH--HHhcC
Confidence 3999999999996 78743
Done!