Citrus Sinensis ID: 036280

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
MPFARFLFCLCVLLFTCHLGTTNAKSFFKLGSRAASCQIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRKTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYESMGVMEEELTLPVE
cccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEccccccEEEEccccccccccEEEEEcccEEEEEcEEEEcccccccccccccccEEEEEEcccEEEEEEEEEEcccccEEcccccEEEEccEEEEEcEEEEcccEEEEEccEEEEcccccccc
ccHHHHHHHHcHHccccccccHHHHHHHccccccccccEEEEEccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEEccccccEcEEEEEEEcccEEEEEEEEEcccccHHccccccccccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEcccccccc
MPFARFLFCLCVLLFTchlgttnaKSFFKLGSRAASCQIVvdhsghgnfsSIQSAidnipsnnknWVCIFIKAgiyrekvripyekpfiilkgvgkrktQIIWDdheslaasptfasfaDNVVVKCMSFVnsynsprsdnknprmpAVAAMVAGdktafyrcgfsgvqdtlwddqgrhyfdrctieGAVDFIFGGGQSIYESMgvmeeeltlpve
MPFARFLFCLCVLLFTCHLGTTNAKSFFKLGSRAASCQIVVDHSGHGNFSSIQSAidnipsnnKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRKTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSynsprsdnknprMPAVAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYESMGVMEeeltlpve
MPFARflfclcvllftchlGTTNAKSFFKLGSRAASCQIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRKTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYESMGVMEEELTLPVE
**FARFLFCLCVLLFTCHLGTTNAKSFFKLGSRAASCQIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRKTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSY**************VAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYESMG***********
***ARFLFCLCVLLFTCHLGTT***********AASCQIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRKTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYESMGVMEEELTL***
MPFARFLFCLCVLLFTCHLGTTNAKSFFKLGSRAASCQIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRKTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYESMGVMEEELTLPVE
MPFARFLFCLCVLLFTCHLGTTNAKSFFKLGSRAASCQIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRKTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYESMGVMEEEL*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPFARFLFCLCVLLFTCHLGTTNAKSFFKLGSRAASCQIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRKTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYESMGVMEEELTLPVE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query215 2.2.26 [Sep-21-2011]
Q4PSN0 335 Probable pectinesterase 2 yes no 0.767 0.492 0.658 1e-63
Q3E9D3 330 Probable pectinesterase 5 no no 0.893 0.581 0.563 3e-62
Q4PSQ5 336 Probable pectinesterase 6 no no 0.813 0.520 0.477 2e-41
O64479 339 Putative pectinesterase 1 no no 0.874 0.554 0.427 5e-39
Q9SIJ9 352 Putative pectinesterase 1 no no 0.720 0.440 0.472 1e-33
Q9ZQA3 407 Probable pectinesterase 1 no no 0.762 0.402 0.429 4e-32
Q9LSP1 344 Probable pectinesterase 6 no no 0.762 0.476 0.420 9e-32
Q8LPF3 362 Probable pectinesterase 6 no no 0.748 0.444 0.427 2e-31
O23038 393 Probable pectinesterase 8 no no 0.772 0.422 0.408 3e-28
Q9LY18 361 Probable pectinesterase 4 no no 0.772 0.459 0.372 8e-26
>sp|Q4PSN0|PME29_ARATH Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1 Back     alignment and function desciption
 Score =  242 bits (618), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 110/167 (65%), Positives = 136/167 (81%), Gaps = 2/167 (1%)

Query: 38  QIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKR 97
           Q+ VD SGHGNF++IQ AID++P NN++W  I +KAG+YREK++IPYEKPFI+L G GKR
Sbjct: 33  QVFVDQSGHGNFTTIQKAIDSVPINNRHWFFINVKAGLYREKIKIPYEKPFIVLVGAGKR 92

Query: 98  KTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSD--NKNPRMPAVAAMVAGD 155
            T++ WDDH S+A SPTF++ ADN VVK ++F NSYN P     NKNPR PAVAA++ GD
Sbjct: 93  LTRVEWDDHYSVAQSPTFSTLADNTVVKSITFANSYNFPSKGKMNKNPRTPAVAALIGGD 152

Query: 156 KTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYES 202
           K+AFY  GF+G+QDTLWD  GRHYF RCTI+GAVDFIFG GQSIY+S
Sbjct: 153 KSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQS 199
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q3E9D3|PME55_ARATH Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSQ5|PME66_ARATH Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2 Back     alignment and function description
>sp|O64479|PME10_ARATH Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
255554132 336 Pectinesterase U1 precursor, putative [R 0.772 0.494 0.732 2e-71
224140813289 predicted protein [Populus trichocarpa] 0.776 0.577 0.707 1e-68
449442469284 PREDICTED: probable pectinesterase 29-li 0.939 0.711 0.584 1e-65
449522680 337 PREDICTED: LOW QUALITY PROTEIN: probable 0.939 0.599 0.584 1e-65
297831202 335 predicted protein [Arabidopsis lyrata su 0.767 0.492 0.658 1e-62
15229583 335 putative pectinesterase 29 [Arabidopsis 0.767 0.492 0.658 6e-62
356502398 336 PREDICTED: probable pectinesterase 29-li 0.897 0.574 0.605 6e-62
147846220 327 hypothetical protein VITISV_033375 [Viti 0.758 0.498 0.662 1e-61
225462781 328 PREDICTED: probable pectinesterase 29-li 0.758 0.496 0.662 2e-61
296090507 341 unnamed protein product [Vitis vinifera] 0.758 0.478 0.662 2e-61
>gi|255554132|ref|XP_002518106.1| Pectinesterase U1 precursor, putative [Ricinus communis] gi|223542702|gb|EEF44239.1| Pectinesterase U1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 148/168 (88%), Gaps = 2/168 (1%)

Query: 39  IVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRK 98
           ++VD SGHGNFS++QSAID++PSNNKNW+CI+IKAGIYREKV+IPY++P+IILKG  KR+
Sbjct: 48  VLVDQSGHGNFSTVQSAIDSVPSNNKNWICIYIKAGIYREKVKIPYDRPYIILKGEAKRR 107

Query: 99  TQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAGDKTA 158
           TQIIWDDH+S A SPTF S ADN++VK + FVNSYN   S+  NPR+PAVAAM+AGDK+A
Sbjct: 108 TQIIWDDHDSTAQSPTFMSLADNIIVKSIRFVNSYNFLNSN--NPRVPAVAAMIAGDKSA 165

Query: 159 FYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYESMGVM 206
           FYRCGF+GVQDTLWDDQGRHYF +CTI+GAVDFIFG GQSIYE   + 
Sbjct: 166 FYRCGFAGVQDTLWDDQGRHYFKKCTIQGAVDFIFGSGQSIYEGCAIQ 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224140813|ref|XP_002323773.1| predicted protein [Populus trichocarpa] gi|222866775|gb|EEF03906.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449442469|ref|XP_004139004.1| PREDICTED: probable pectinesterase 29-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449522680|ref|XP_004168354.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 29-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297831202|ref|XP_002883483.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329323|gb|EFH59742.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15229583|ref|NP_189055.1| putative pectinesterase 29 [Arabidopsis thaliana] gi|75339286|sp|Q4PSN0.1|PME29_ARATH RecName: Full=Probable pectinesterase 29; Short=PE 29; AltName: Full=Pectin methylesterase 29; Short=AtPME29; Flags: Precursor gi|67633660|gb|AAY78754.1| pectinesterase family protein [Arabidopsis thaliana] gi|332643340|gb|AEE76861.1| putative pectinesterase 29 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356502398|ref|XP_003520006.1| PREDICTED: probable pectinesterase 29-like [Glycine max] Back     alignment and taxonomy information
>gi|147846220|emb|CAN79494.1| hypothetical protein VITISV_033375 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462781|ref|XP_002263748.1| PREDICTED: probable pectinesterase 29-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296090507|emb|CBI40838.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
TAIR|locus:2093736 335 AT3G24130 [Arabidopsis thalian 0.767 0.492 0.658 1.9e-60
TAIR|locus:2179659 330 AT5G18990 [Arabidopsis thalian 0.767 0.5 0.640 3.5e-59
TAIR|locus:2065145 336 AT2G47280 [Arabidopsis thalian 0.813 0.520 0.477 2.9e-39
TAIR|locus:2059030 339 AT2G19150 [Arabidopsis thalian 0.748 0.474 0.478 8e-37
TAIR|locus:2049344 352 PE11 "pectinesterase 11" [Arab 0.720 0.440 0.472 1.8e-32
TAIR|locus:2040535 407 AT2G36710 [Arabidopsis thalian 0.762 0.402 0.423 1.3e-31
TAIR|locus:2086037 344 AT3G17060 [Arabidopsis thalian 0.772 0.482 0.415 1.3e-31
TAIR|locus:2169023 362 PME5 "pectin methylesterase 5" 0.748 0.444 0.445 5.4e-31
TAIR|locus:2207245 393 AT1G05310 [Arabidopsis thalian 0.767 0.419 0.416 9.1e-29
TAIR|locus:2040525 333 AT2G36700 [Arabidopsis thalian 0.790 0.510 0.370 4e-26
TAIR|locus:2093736 AT3G24130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 110/167 (65%), Positives = 136/167 (81%)

Query:    38 QIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKR 97
             Q+ VD SGHGNF++IQ AID++P NN++W  I +KAG+YREK++IPYEKPFI+L G GKR
Sbjct:    33 QVFVDQSGHGNFTTIQKAIDSVPINNRHWFFINVKAGLYREKIKIPYEKPFIVLVGAGKR 92

Query:    98 KTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSD--NKNPRMPAVAAMVAGD 155
              T++ WDDH S+A SPTF++ ADN VVK ++F NSYN P     NKNPR PAVAA++ GD
Sbjct:    93 LTRVEWDDHYSVAQSPTFSTLADNTVVKSITFANSYNFPSKGKMNKNPRTPAVAALIGGD 152

Query:   156 KTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYES 202
             K+AFY  GF+G+QDTLWD  GRHYF RCTI+GAVDFIFG GQSIY+S
Sbjct:   153 KSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQS 199
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2179659 AT5G18990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065145 AT2G47280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059030 AT2G19150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086037 AT3G17060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.471.1
pectinesterase family protein (EC-3.1.1.11) (289 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
PLN02497 331 PLN02497, PLN02497, probable pectinesterase 1e-108
PLN02176 340 PLN02176, PLN02176, putative pectinesterase 2e-59
PLN02480 343 PLN02480, PLN02480, Probable pectinesterase 2e-54
PLN02432 293 PLN02432, PLN02432, putative pectinesterase 5e-53
PLN02682 369 PLN02682, PLN02682, pectinesterase family protein 1e-44
PLN02665 366 PLN02665, PLN02665, pectinesterase family protein 2e-43
PLN02634 359 PLN02634, PLN02634, probable pectinesterase 2e-42
PLN02304 379 PLN02304, PLN02304, probable pectinesterase 1e-40
PLN02671 359 PLN02671, PLN02671, pectinesterase 7e-36
pfam01095 298 pfam01095, Pectinesterase, Pectinesterase 2e-33
PLN02773 317 PLN02773, PLN02773, pectinesterase 7e-27
PLN02197 588 PLN02197, PLN02197, pectinesterase 3e-26
PLN02468 565 PLN02468, PLN02468, putative pectinesterase/pectin 8e-25
PLN02990 572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-22
PLN02933 530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-22
PLN02745 596 PLN02745, PLN02745, Putative pectinesterase/pectin 4e-22
PLN02314 586 PLN02314, PLN02314, pectinesterase 4e-22
PLN02488 509 PLN02488, PLN02488, probable pectinesterase/pectin 4e-22
PLN02713 566 PLN02713, PLN02713, Probable pectinesterase/pectin 2e-21
PLN02506 537 PLN02506, PLN02506, putative pectinesterase/pectin 2e-21
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 3e-21
PLN03043 538 PLN03043, PLN03043, Probable pectinesterase/pectin 4e-21
PLN02416 541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-20
PLN02313 587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-20
PLN02916 502 PLN02916, PLN02916, pectinesterase family protein 1e-20
PLN02201 520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-20
PLN02170 529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-19
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 2e-19
PLN02301 548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-18
COG4677 405 COG4677, PemB, Pectin methylesterase [Carbohydrate 8e-18
PLN02708 553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-16
PLN02995 539 PLN02995, PLN02995, Probable pectinesterase/pectin 2e-16
PRK10531 422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-14
PLN02698 497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-13
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information 
 Score =  314 bits (806), Expect = e-108
 Identities = 119/165 (72%), Positives = 142/165 (86%)

Query: 38  QIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKR 97
           Q+ VD SGHGNF++IQSAID++PSNNK+W CI +KAG+YREKV+IPY+KPFI+L G GKR
Sbjct: 33  QVFVDQSGHGNFTTIQSAIDSVPSNNKHWFCINVKAGLYREKVKIPYDKPFIVLVGAGKR 92

Query: 98  KTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAGDKT 157
           +T+I WDDH+S A SPTF++ ADN VVK ++F NSYN P   NKNPR+PAVAAM+ GDK+
Sbjct: 93  RTRIEWDDHDSTAQSPTFSTLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKS 152

Query: 158 AFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYES 202
           AFY CGF+GVQDTLWD  GRHYF RCTI+GAVDFIFG GQSIYES
Sbjct: 153 AFYSCGFAGVQDTLWDSDGRHYFKRCTIQGAVDFIFGSGQSIYES 197

Length = 331
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 215
PLN02176 340 putative pectinesterase 100.0
PLN02497 331 probable pectinesterase 100.0
PLN02682 369 pectinesterase family protein 100.0
PLN02634 359 probable pectinesterase 100.0
PLN02432 293 putative pectinesterase 100.0
PLN02665 366 pectinesterase family protein 100.0
PLN02304 379 probable pectinesterase 100.0
PLN02773 317 pectinesterase 100.0
PLN02671 359 pectinesterase 100.0
PLN02480 343 Probable pectinesterase 100.0
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916 502 pectinesterase family protein 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197 588 pectinesterase 100.0
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301 548 pectinesterase/pectinesterase inhibitor 100.0
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314 586 pectinesterase 100.0
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02313 587 Pectinesterase/pectinesterase inhibitor 100.0
PRK10531 422 acyl-CoA thioesterase; Provisional 100.0
COG4677 405 PemB Pectin methylesterase [Carbohydrate transport 100.0
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 100.0
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 99.64
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 99.14
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.02
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.94
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.64
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.24
KOG1777 625 consensus Putative Zn-finger protein [General func 97.81
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 97.77
smart00656190 Amb_all Amb_all domain. 97.34
PLN02155 394 polygalacturonase 97.13
PLN02793 443 Probable polygalacturonase 97.06
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.06
PLN02773317 pectinesterase 97.02
PLN02671359 pectinesterase 97.01
PLN03010 409 polygalacturonase 96.98
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.94
PLN02480343 Probable pectinesterase 96.87
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 96.83
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 96.8
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 96.7
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 96.59
PLN02197 588 pectinesterase 96.59
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.58
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.58
PLN02634359 probable pectinesterase 96.57
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 96.57
PLN02170529 probable pectinesterase/pectinesterase inhibitor 96.52
PLN02176340 putative pectinesterase 96.51
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 96.45
PLN02916 502 pectinesterase family protein 96.41
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 96.41
PLN03003 456 Probable polygalacturonase At3g15720 96.41
PLN02301 548 pectinesterase/pectinesterase inhibitor 96.39
PLN02497331 probable pectinesterase 96.39
PLN02432293 putative pectinesterase 96.38
PLN02314586 pectinesterase 96.28
PLN02313 587 Pectinesterase/pectinesterase inhibitor 96.24
PLN02468565 putative pectinesterase/pectinesterase inhibitor 96.17
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 96.13
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 96.06
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 96.05
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 95.97
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 95.91
PLN02665366 pectinesterase family protein 95.91
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 95.84
PLN02218 431 polygalacturonase ADPG 95.82
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.82
PLN02682369 pectinesterase family protein 95.75
PLN02304379 probable pectinesterase 95.55
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 95.11
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 95.08
PRK10531422 acyl-CoA thioesterase; Provisional 95.06
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.77
smart00722146 CASH Domain present in carbohydrate binding protei 94.65
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 94.42
PLN02218431 polygalacturonase ADPG 94.28
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 93.11
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 92.39
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 91.61
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 91.24
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 82.68
PF05048 236 NosD: Periplasmic copper-binding protein (NosD); I 82.41
PF03718 582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 82.02
>PLN02176 putative pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=5e-58  Score=409.29  Aligned_cols=203  Identities=42%  Similarity=0.737  Sum_probs=176.9

Q ss_pred             CcchhHHHHHHhhhhccCCccccccccccCCCCCcCeEEEcCCCCCCCchHHHHHHhCCCCCCceEEEEEeCceeeeeEE
Q 036280            2 PFARFLFCLCVLLFTCHLGTTNAKSFFKLGSRAASCQIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVR   81 (215)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~~g~g~f~TIq~AI~aa~~~~~~~~~I~I~~G~Y~E~v~   81 (215)
                      .|.|-||-+|+|+++.-..+....    ......+.+++|+++|+|+|+|||+|||++|+++.+|++|+|+||+|+|+|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~Va~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~EkV~   83 (340)
T PLN02176          8 SFCYSYFKVCLLVMTLAYGSAEYD----AASSQIAKTIIVNPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYREKVT   83 (340)
T ss_pred             hhhHHHHHHHHHHHHHhhcccccc----ccccccCceEEECCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEEEEEE
Confidence            367777877777655444444221    1112245689999999999999999999999998889999999999999999


Q ss_pred             EeCCCCeEEEEecCCCceEEEecCCCCCCCccEEEEEcCceEEEeeEEEeccCCCCCCCCCCCCceEEEEEeCCeEEEEE
Q 036280           82 IPYEKPFIILKGVGKRKTQIIWDDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAGDKTAFYR  161 (215)
Q Consensus        82 I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~sat~~v~a~~~~~~nlti~N~~~~~~~~~~~~~~qavAl~~~~d~~~~~n  161 (215)
                      |++.||+|+|+|++++.|+|+|++...+..++||.+.+++|+++||||+|+++..... +...+||+||++.+||++|++
T Consensus        84 Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v~a~~F~a~nlT~~Nt~~~~~~~-~~~~~QAVAl~v~gDr~~f~~  162 (340)
T PLN02176         84 IPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTSYASNIIITGITFKNTYNIASNS-SRPTKPAVAARMLGDKYAIID  162 (340)
T ss_pred             ECCCCccEEEEEcCCCceEEEEeCCcccccceEEEEECCCEEEEeeEEEeCCCccCCC-CCCccceEEEEecCccEEEEc
Confidence            9999999999999999999999988888889999999999999999999999743211 014689999999999999999


Q ss_pred             eEEEeeeeeeEecCcceEEecCEEEeeeeEEecCceEEEEeeEEEEcc
Q 036280          162 CGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYESMGVMEEE  209 (215)
Q Consensus       162 c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfIfG~~~a~fe~c~i~~~~  209 (215)
                      |+|+|||||||++.|||||++|+|+|+||||||+|+++||+|+|+++.
T Consensus       163 C~f~G~QDTLy~~~gRqyf~~CyIeG~VDFIFG~a~a~Fe~C~I~s~~  210 (340)
T PLN02176        163 SSFDGFQDTLFDGKGRHYYKRCVISGGIDFIFGYAQSIFEGCTLKLTL  210 (340)
T ss_pred             cEEecccceeEeCCcCEEEEecEEEecccEEecCceEEEeccEEEEec
Confidence            999999999999999999999999999999999999999999999974

>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
1gq8_A 319 Pectin Methylesterase From Carrot Length = 319 6e-18
3uw0_A 364 Pectin Methylesterase From Yersinia Enterocolitica 2e-13
1xg2_A 317 Crystal Structure Of The Complex Between Pectin Met 4e-12
1qjv_A 342 Pectin Methylesterase Pema From Erwinia Chrysanthem 4e-09
2ntb_A 342 Crystal Structure Of Pectin Methylesterase In Compl 4e-09
2nsp_A 342 Crystal Structure Of Pectin Methylesterase D178a Mu 3e-08
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 39  IVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRK 98
           +VV   G G++ ++  A+   P ++K    I IKAG+YRE V +P +K  I+  G G+  
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68
Query: 99  TQIIW----DDHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAG 154
           T I       D  +   S T A+     + + ++F N+  + +         AVA  V  
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQ-------AVALRVGS 121
Query: 155 DKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYE 201
           D +AFYRC     QD+L+    R +F  C I G VDFIFG    + +
Sbjct: 122 DLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQ 168
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 6e-70
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 2e-68
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 3e-65
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 4e-65
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-54
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  215 bits (549), Expect = 6e-70
 Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 11/175 (6%)

Query: 32  SRAASCQIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIIL 91
           S      +VV   G G++ ++  A+   P ++K    I IKAG+YRE V +P +K  I+ 
Sbjct: 2   SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMF 61

Query: 92  KGVGKRKTQIIWD----DHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPA 147
            G G+  T I       D  +   S T A+     + + ++F N+           +  A
Sbjct: 62  LGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAG-------AAKHQA 114

Query: 148 VAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYES 202
           VA  V  D +AFYRC     QD+L+    R +F  C I G VDFIFG    + + 
Sbjct: 115 VALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQD 169
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 100.0
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.73
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.68
2inu_A 410 Insulin fructotransferase; right-handed parallel b 99.06
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.45
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 98.18
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 98.07
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 98.05
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.96
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.83
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.74
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.71
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.67
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 97.64
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.58
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 97.56
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 97.55
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 97.54
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.54
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.5
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.49
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.48
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.46
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 97.44
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.39
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 97.38
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.38
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.18
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 97.14
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.07
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 96.96
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.71
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 95.92
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 94.62
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 94.51
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.47
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 94.22
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 94.01
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 93.85
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 93.83
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 92.81
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 92.4
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 92.11
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 91.92
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 90.34
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 90.33
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 87.15
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 86.2
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 85.08
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 84.14
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 84.1
2inu_A 410 Insulin fructotransferase; right-handed parallel b 83.67
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
Probab=100.00  E-value=9.6e-53  Score=378.86  Aligned_cols=197  Identities=30%  Similarity=0.505  Sum_probs=141.6

Q ss_pred             CCcchhHHHHHHh-hhhccCCccccccccccCCCCCcCeEEEcCC-CCCCCchHHHHHHhCCCCCCceEEEEEeCceeee
Q 036280            1 MPFARFLFCLCVL-LFTCHLGTTNAKSFFKLGSRAASCQIVVDHS-GHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYRE   78 (215)
Q Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~~-g~g~f~TIq~AI~aa~~~~~~~~~I~I~~G~Y~E   78 (215)
                      ||...+.=.|+++ |+.|...+.++          ...+++|+++ |+|+|+|||+||+++|+++ +|++|+|+||+|+|
T Consensus         4 ~~~~~~~~~l~~~l~~~~~~~~~~~----------~~~~~~V~~~~g~g~f~TIq~Ai~aa~~~~-~~~~I~I~~G~Y~E   72 (364)
T 3uw0_A            4 MPINLLGKTLWLGLISFAVLGTVNA----------AQYNAVVSTTPQGDEFSSINAALKSAPKDD-TPFIIFLKNGVYTE   72 (364)
T ss_dssp             --------------------------------------------------CCCHHHHHHHSCSSS-SCEEEEECSEEECC
T ss_pred             ccHHHHHHHHHHHHHHHhccccccc----------cCceEEEcCCCCCCCcccHHHHHhhcccCC-CcEEEEEeCCEEEE
Confidence            7888876655433 45666544322          2357999999 9999999999999999886 68899999999999


Q ss_pred             eEEEeCCCCeEEEEecCCCceEEEecCCC----------CCCCccEEEEEcCceEEEeeEEEeccCCCC------CC-CC
Q 036280           79 KVRIPYEKPFIILKGVGKRKTQIIWDDHE----------SLAASPTFASFADNVVVKCMSFVNSYNSPR------SD-NK  141 (215)
Q Consensus        79 ~v~I~~~k~~ItL~G~~~~~v~I~~~~~~----------~~~~sat~~v~a~~~~~~nlti~N~~~~~~------~~-~~  141 (215)
                      +|+|+  |++|+|+|++++.|+|+++..+          ++..++||.|.+++|+++||||+|+++...      .+ .+
T Consensus        73 ~v~I~--k~~itl~G~g~~~TiIt~~~~~~~~~~~g~~~gt~~saTv~V~a~~f~a~nitf~Nt~~~~~~~~~~~~~p~~  150 (364)
T 3uw0_A           73 RLEVA--RSHVTLKGENRDGTVIGANTAAGMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPTK  150 (364)
T ss_dssp             CEEEC--STTEEEEESCTTTEEEEECCCTTSBCTTCSBCCTTTCCSEEECSTTCEEEEEEEEECCCHHHHHHSCTTCTTC
T ss_pred             EEEEc--CCeEEEEecCCCCeEEEccccccccccccccccccCeeEEEEECCCEEEEeeeeEcCCccccccccccccccc
Confidence            99998  5689999999999999998643          256789999999999999999999986210      00 11


Q ss_pred             CCCCceEEEEE--eCCeEEEEEeEEEeeeeeeEec-CcceEEecCEEEeeeeEEecCceEEEEeeEEEEccc
Q 036280          142 NPRMPAVAAMV--AGDKTAFYRCGFSGVQDTLWDD-QGRHYFDRCTIEGAVDFIFGGGQSIYESMGVMEEEL  210 (215)
Q Consensus       142 ~~~~qavAl~~--~~d~~~~~nc~~~g~QDTl~~~-~gr~~f~~c~I~G~vDfIfG~~~a~fe~c~i~~~~~  210 (215)
                      ...+||+||++  ++|++.|+||+|.|||||||++ .|||||++|+|+|+||||||+|++|||+|+|+++..
T Consensus       151 ~~~~QAvAl~v~~~~D~~~f~~C~f~G~QDTLy~~~~gr~yf~~c~I~GtvDFIFG~a~a~f~~c~i~~~~~  222 (364)
T 3uw0_A          151 LKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCNIVARDR  222 (364)
T ss_dssp             CSCCCCCSEEECTTCEEEEEEEEEEECSBSCEEECTTCEEEEESCEEEESEEEEEESSEEEEESCEEEECCC
T ss_pred             ccCCccEEEEEecCCCeEEEEeeEEEecccceEeCCCCCEEEEcCEEEcCCCEECCcceEEEEeeEEEEecc
Confidence            14689999999  5999999999999999999999 899999999999999999999999999999999864
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 215
d1gq8a_ 319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 8e-60
d1qjva_ 342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-47
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 0.003
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  188 bits (478), Expect = 8e-60
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 39  IVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRK 98
           +VV   G G++ ++  A+   P ++K    I IKAG+YRE V +P +K  I+  G G+  
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 99  TQIIWD----DHESLAASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAG 154
           T I       D  +   S T A+     + + ++F N+  +        +  AVA  V  
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGA-------AKHQAVALRVGS 121

Query: 155 DKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYES 202
           D +AFYRC     QD+L+    R +F  C I G VDFIFG    + + 
Sbjct: 122 DLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQD 169
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.34
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 99.1
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.43
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.51
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.34
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.11
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.1
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.08
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.07
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.03
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.72
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.57
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 96.32
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 96.31
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.69
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 95.26
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 95.11
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 94.8
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 94.58
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 94.27
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 94.03
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 92.98
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 92.63
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 92.34
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 88.23
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 84.74
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.3e-55  Score=389.02  Aligned_cols=169  Identities=31%  Similarity=0.541  Sum_probs=159.7

Q ss_pred             CcCeEEEcCCCCCCCchHHHHHHhCCCCCCceEEEEEeCceeeeeEEEeCCCCeEEEEecCCCceEEEecCCCC----CC
Q 036280           35 ASCQIVVDHSGHGNFSSIQSAIDNIPSNNKNWVCIFIKAGIYREKVRIPYEKPFIILKGVGKRKTQIIWDDHES----LA  110 (215)
Q Consensus        35 ~~~~i~V~~~g~g~f~TIq~AI~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~~----~~  110 (215)
                      .+.+++|++||+|||+|||+||+++|+++++|++|+|+||+|+|+|+|++.||+|||+|++++.|+|+++....    +.
T Consensus         5 ~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~   84 (319)
T d1gq8a_           5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTF   84 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTG
T ss_pred             CCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccc
Confidence            56679999999999999999999999999999999999999999999999999999999999999999987643    56


Q ss_pred             CccEEEEEcCceEEEeeEEEeccCCCCCCCCCCCCceEEEEEeCCeEEEEEeEEEeeeeeeEecCcceEEecCEEEeeee
Q 036280          111 ASPTFASFADNVVVKCMSFVNSYNSPRSDNKNPRMPAVAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVD  190 (215)
Q Consensus       111 ~sat~~v~a~~~~~~nlti~N~~~~~~~~~~~~~~qavAl~~~~d~~~~~nc~~~g~QDTl~~~~gr~~f~~c~I~G~vD  190 (215)
                      +++||.+.+++|+++||||+|+++.       .++||+||++.+||+.|++|+|+|+|||||++.|||||++|+|+|+||
T Consensus        85 ~sat~~v~~~~f~a~nitf~Nt~g~-------~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vD  157 (319)
T d1gq8a_          85 NSATVAAVGAGFLARDITFQNTAGA-------AKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVD  157 (319)
T ss_dssp             GGCSEEECSTTCEEEEEEEEECCCG-------GGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSS
T ss_pred             cccceeeecCCeEEEeeEEEeCCCC-------CCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeecc
Confidence            7899999999999999999999974       468999999999999999999999999999999999999999999999


Q ss_pred             EEecCceEEEEeeEEEEccc
Q 036280          191 FIFGGGQSIYESMGVMEEEL  210 (215)
Q Consensus       191 fIfG~~~a~fe~c~i~~~~~  210 (215)
                      ||||+++++||+|+|+++..
T Consensus       158 FIfG~~~a~f~~c~i~~~~~  177 (319)
T d1gq8a_         158 FIFGNAAVVLQDCDIHARRP  177 (319)
T ss_dssp             CEEESCEEEEESCEEEECCC
T ss_pred             EEecCceeEeecceeeeecC
Confidence            99999999999999999864
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure