Query 036281
Match_columns 371
No_of_seqs 156 out of 1564
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 11:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.6E-35 5.6E-40 259.1 25.1 216 109-342 1-230 (230)
2 PF08268 FBA_3: F-box associat 99.7 1E-15 2.2E-20 121.8 14.3 105 218-328 1-118 (129)
3 PF07734 FBA_1: F-box associat 99.7 5.6E-15 1.2E-19 122.5 15.6 138 218-362 1-164 (164)
4 PLN03215 ascorbic acid mannose 99.4 1.7E-10 3.7E-15 105.7 21.6 323 8-364 2-373 (373)
5 PHA02713 hypothetical protein; 99.0 1.8E-07 3.9E-12 92.6 22.5 192 126-350 323-543 (557)
6 PF12937 F-box-like: F-box-lik 98.8 1.5E-09 3.1E-14 69.8 0.7 42 10-51 1-42 (47)
7 PHA02790 Kelch-like protein; P 98.7 1.4E-06 3E-11 85.0 20.1 182 126-347 290-477 (480)
8 PHA02713 hypothetical protein; 98.7 1.2E-06 2.5E-11 86.9 19.5 192 126-349 275-498 (557)
9 KOG4441 Proteins containing BT 98.7 1.1E-06 2.3E-11 87.0 18.6 207 107-348 326-554 (571)
10 PF00646 F-box: F-box domain; 98.7 2.9E-09 6.3E-14 68.7 -0.5 45 10-54 3-47 (48)
11 PHA03098 kelch-like protein; P 98.6 1.6E-06 3.5E-11 85.9 18.1 192 123-348 312-519 (534)
12 PLN02153 epithiospecifier prot 98.6 5.5E-06 1.2E-10 77.3 19.7 207 123-350 51-294 (341)
13 KOG4441 Proteins containing BT 98.6 3.6E-06 7.9E-11 83.3 19.1 192 126-349 304-508 (571)
14 PLN02193 nitrile-specifier pro 98.6 1.6E-05 3.5E-10 77.3 22.8 205 123-350 194-420 (470)
15 smart00256 FBOX A Receptor for 98.6 8.9E-09 1.9E-13 64.0 -0.0 39 13-51 1-39 (41)
16 TIGR03548 mutarot_permut cycli 98.5 3.2E-05 6.9E-10 71.6 20.7 150 186-348 87-287 (323)
17 TIGR03547 muta_rot_YjhT mutatr 98.5 4.5E-05 9.7E-10 71.3 21.5 202 122-348 29-306 (346)
18 PRK14131 N-acetylneuraminic ac 98.4 4.6E-05 1E-09 72.0 19.9 227 98-348 23-328 (376)
19 PHA03098 kelch-like protein; P 98.3 5.8E-05 1.3E-09 74.9 17.7 190 126-348 267-472 (534)
20 PHA02790 Kelch-like protein; P 98.2 9E-05 1.9E-09 72.3 18.3 145 186-349 286-432 (480)
21 PLN02153 epithiospecifier prot 98.2 0.00035 7.6E-09 65.1 20.3 158 187-351 50-236 (341)
22 PLN02193 nitrile-specifier pro 98.1 0.00036 7.8E-09 68.0 19.2 156 187-350 193-361 (470)
23 TIGR03548 mutarot_permut cycli 97.9 0.0021 4.6E-08 59.4 20.5 136 123-283 89-230 (323)
24 KOG1230 Protein containing rep 97.9 0.00029 6.3E-09 64.4 13.5 212 122-351 98-351 (521)
25 PRK14131 N-acetylneuraminic ac 97.8 0.0026 5.7E-08 60.1 19.2 150 187-346 189-374 (376)
26 KOG2120 SCF ubiquitin ligase, 97.3 5.4E-05 1.2E-09 66.7 0.1 42 9-50 97-138 (419)
27 TIGR03547 muta_rot_YjhT mutatr 97.2 0.021 4.6E-07 53.3 16.6 85 187-283 29-125 (346)
28 KOG0379 Kelch repeat-containin 96.8 0.18 4E-06 49.3 19.0 157 188-351 89-260 (482)
29 KOG4693 Uncharacterized conser 96.4 0.18 3.8E-06 44.1 14.2 134 186-328 156-308 (392)
30 KOG4693 Uncharacterized conser 96.2 0.036 7.8E-07 48.3 9.0 157 186-352 104-288 (392)
31 KOG0379 Kelch repeat-containin 96.2 0.33 7.2E-06 47.5 17.0 205 124-351 90-312 (482)
32 KOG2997 F-box protein FBX9 [Ge 95.8 0.0029 6.3E-08 56.2 0.5 45 10-54 107-156 (366)
33 KOG1230 Protein containing rep 95.4 0.67 1.5E-05 43.2 13.9 155 187-350 98-288 (521)
34 KOG0281 Beta-TrCP (transducin 95.2 0.0056 1.2E-07 54.9 0.3 46 10-55 75-124 (499)
35 PF02191 OLF: Olfactomedin-lik 93.8 3.3 7.1E-05 36.7 14.2 134 209-350 65-213 (250)
36 PF02897 Peptidase_S9_N: Proly 93.6 5.2 0.00011 38.2 16.7 148 187-348 252-412 (414)
37 smart00284 OLF Olfactomedin-li 93.1 5.2 0.00011 35.4 14.2 134 209-350 70-218 (255)
38 PF13964 Kelch_6: Kelch motif 92.8 0.33 7.1E-06 30.9 4.9 37 216-252 5-44 (50)
39 COG4257 Vgb Streptogramin lyas 92.5 1.7 3.7E-05 38.5 10.1 123 107-257 193-318 (353)
40 PF13360 PQQ_2: PQQ-like domai 92.2 7 0.00015 33.7 16.9 195 112-347 35-237 (238)
41 COG3055 Uncharacterized protei 91.7 4.1 8.9E-05 37.4 11.9 169 187-369 113-358 (381)
42 TIGR01640 F_box_assoc_1 F-box 90.9 8.8 0.00019 33.3 13.4 121 220-350 3-137 (230)
43 smart00612 Kelch Kelch domain. 88.2 0.88 1.9E-05 28.0 3.7 19 186-204 14-32 (47)
44 PF10282 Lactonase: Lactonase, 88.1 17 0.00037 33.8 13.8 116 222-349 154-286 (345)
45 PF10282 Lactonase: Lactonase, 87.7 24 0.00051 32.9 17.8 151 186-348 165-332 (345)
46 PF01344 Kelch_1: Kelch motif; 86.7 1.7 3.6E-05 27.0 4.4 37 216-252 5-44 (47)
47 PF07646 Kelch_2: Kelch motif; 85.5 2.7 5.8E-05 26.5 4.9 38 216-253 5-47 (49)
48 PF07893 DUF1668: Protein of u 84.6 34 0.00075 31.8 15.1 128 115-259 79-225 (342)
49 PF07893 DUF1668: Protein of u 84.2 28 0.00061 32.4 12.9 54 188-246 200-254 (342)
50 PF07762 DUF1618: Protein of u 82.9 11 0.00024 29.4 8.5 72 237-308 7-97 (131)
51 PRK11138 outer membrane biogen 80.9 45 0.00098 31.6 13.4 117 216-347 63-185 (394)
52 KOG4341 F-box protein containi 79.8 0.53 1.2E-05 44.1 -0.2 37 12-48 74-110 (483)
53 smart00564 PQQ beta-propeller 79.6 6.8 0.00015 22.0 4.6 27 321-347 5-31 (33)
54 PF06433 Me-amine-dh_H: Methyl 79.4 29 0.00064 32.1 10.7 122 217-345 188-325 (342)
55 PF01344 Kelch_1: Kelch motif; 78.9 4.6 0.0001 24.9 4.1 20 184-203 25-44 (47)
56 PF08450 SGL: SMP-30/Gluconola 77.8 47 0.001 28.9 19.6 195 112-350 10-223 (246)
57 KOG2055 WD40 repeat protein [G 77.0 71 0.0015 30.6 13.1 102 235-347 279-381 (514)
58 PF13964 Kelch_6: Kelch motif 76.6 2 4.4E-05 27.1 1.9 21 122-143 28-48 (50)
59 PF07646 Kelch_2: Kelch motif; 75.9 7.3 0.00016 24.4 4.4 30 320-349 9-47 (49)
60 cd01207 Ena-Vasp Enabled-VASP- 75.9 7.1 0.00015 29.7 4.9 40 126-173 12-51 (111)
61 PF12458 DUF3686: ATPase invol 74.1 27 0.00058 33.1 9.1 138 110-297 235-384 (448)
62 cd01206 Homer Homer type EVH1 73.8 5.9 0.00013 29.8 3.9 39 123-173 12-51 (111)
63 KOG0274 Cdc4 and related F-box 73.3 0.92 2E-05 44.9 -0.5 42 10-51 108-149 (537)
64 PF08450 SGL: SMP-30/Gluconola 72.9 63 0.0014 28.1 14.4 111 218-347 5-129 (246)
65 PF05096 Glu_cyclase_2: Glutam 72.4 71 0.0015 28.5 14.9 137 185-347 66-210 (264)
66 PF01011 PQQ: PQQ enzyme repea 71.8 8.5 0.00019 22.7 3.7 27 323-349 1-27 (38)
67 PF13418 Kelch_4: Galactose ox 71.2 17 0.00036 22.6 5.2 28 320-347 10-44 (49)
68 PRK11138 outer membrane biogen 70.4 98 0.0021 29.2 14.2 107 216-347 250-360 (394)
69 COG4257 Vgb Streptogramin lyas 70.1 83 0.0018 28.3 11.0 117 227-352 118-274 (353)
70 KOG0293 WD40 repeat-containing 68.7 1.1E+02 0.0023 29.1 12.2 70 274-347 404-477 (519)
71 COG3055 Uncharacterized protei 67.3 48 0.001 30.7 9.0 88 215-311 39-135 (381)
72 PF13360 PQQ_2: PQQ-like domai 66.4 83 0.0018 26.9 15.3 137 188-348 4-148 (238)
73 TIGR03074 PQQ_membr_DH membran 64.0 1.8E+02 0.0038 30.5 13.5 32 215-250 187-220 (764)
74 KOG1963 WD40 repeat protein [G 61.9 59 0.0013 33.5 9.2 57 286-342 476-540 (792)
75 PLN02772 guanylate kinase 61.5 62 0.0014 30.7 8.9 75 215-298 27-107 (398)
76 PF13570 PQQ_3: PQQ-like domai 60.4 15 0.00033 21.8 3.3 26 216-245 15-40 (40)
77 PF03088 Str_synth: Strictosid 59.6 24 0.00053 25.6 4.7 17 331-347 36-52 (89)
78 KOG4152 Host cell transcriptio 57.9 2E+02 0.0042 28.3 13.5 204 122-350 57-312 (830)
79 TIGR03300 assembly_YfgL outer 53.2 1.9E+02 0.0042 26.9 14.3 106 216-346 235-344 (377)
80 COG3386 Gluconolactonase [Carb 53.1 1.8E+02 0.004 26.6 12.1 104 223-344 37-155 (307)
81 COG2706 3-carboxymuconate cycl 52.9 1.9E+02 0.0042 26.8 17.5 153 186-349 166-332 (346)
82 KOG3545 Olfactomedin and relat 52.7 1.6E+02 0.0035 25.9 10.1 134 209-350 64-212 (249)
83 TIGR03300 assembly_YfgL outer 51.1 2.1E+02 0.0046 26.7 21.1 141 188-346 156-303 (377)
84 KOG0291 WD40-repeat-containing 51.1 2.6E+02 0.0057 28.9 11.5 122 217-343 250-383 (893)
85 TIGR02658 TTQ_MADH_Hv methylam 49.0 2.3E+02 0.005 26.5 14.0 118 220-347 203-338 (352)
86 PF10902 DUF2693: Protein of u 48.6 27 0.00058 25.0 3.3 19 332-350 49-67 (83)
87 COG1520 FOG: WD40-like repeat 45.5 2.6E+02 0.0056 26.1 13.4 138 186-347 34-178 (370)
88 KOG0279 G protein beta subunit 45.4 1.8E+02 0.0039 26.2 8.5 72 274-351 201-274 (315)
89 KOG2321 WD40 repeat protein [G 43.2 2.4E+02 0.0053 28.1 9.7 96 237-343 156-261 (703)
90 PF13415 Kelch_3: Galactose ox 43.1 22 0.00049 22.1 2.1 21 122-143 19-39 (49)
91 TIGR03075 PQQ_enz_alc_DH PQQ-d 42.6 3.6E+02 0.0077 26.9 13.1 118 216-347 63-196 (527)
92 COG2706 3-carboxymuconate cycl 40.9 3E+02 0.0065 25.5 15.1 76 274-350 199-286 (346)
93 PF13013 F-box-like_2: F-box-l 40.6 8.3 0.00018 29.3 -0.2 30 9-38 21-50 (109)
94 KOG0289 mRNA splicing factor [ 40.1 3.5E+02 0.0075 26.0 11.9 124 186-329 368-494 (506)
95 PRK11028 6-phosphogluconolacto 39.8 2.9E+02 0.0063 25.1 17.9 117 222-348 185-314 (330)
96 KOG2502 Tub family proteins [G 39.8 18 0.0004 33.2 1.8 38 9-46 44-89 (355)
97 PLN02772 guanylate kinase 39.5 2.8E+02 0.0061 26.4 9.5 73 270-342 28-110 (398)
98 PF08268 FBA_3: F-box associat 38.3 1E+02 0.0023 23.7 5.8 47 320-366 3-60 (129)
99 PF06058 DCP1: Dcp1-like decap 37.0 65 0.0014 25.0 4.2 28 325-352 22-49 (122)
100 KOG0310 Conserved WD40 repeat- 36.9 4E+02 0.0087 25.8 14.0 141 186-350 47-194 (487)
101 KOG0283 WD40 repeat-containing 36.5 2.1E+02 0.0045 29.5 8.5 108 111-243 378-491 (712)
102 KOG0295 WD40 repeat-containing 36.2 3.2E+02 0.0069 25.6 8.9 67 277-347 304-371 (406)
103 TIGR03866 PQQ_ABC_repeats PQQ- 35.5 3E+02 0.0065 24.0 15.0 120 222-353 167-293 (300)
104 KOG1274 WD40 repeat protein [G 35.1 5.7E+02 0.012 27.1 17.6 58 287-344 158-222 (933)
105 KOG1332 Vesicle coat complex C 34.9 67 0.0015 28.2 4.3 78 286-370 182-277 (299)
106 KOG2106 Uncharacterized conser 32.9 4.9E+02 0.011 25.6 16.3 60 286-351 387-447 (626)
107 PF15525 DUF4652: Domain of un 32.4 2.8E+02 0.006 23.4 7.3 57 292-349 89-157 (200)
108 PF00400 WD40: WD domain, G-be 31.5 1E+02 0.0022 17.4 6.2 38 301-338 1-39 (39)
109 KOG0316 Conserved WD40 repeat- 30.6 3.8E+02 0.0082 23.6 13.6 129 186-344 80-217 (307)
110 KOG0321 WD40 repeat-containing 30.5 2.4E+02 0.0051 28.5 7.6 98 236-343 74-178 (720)
111 KOG0649 WD40 repeat protein [G 29.3 4.1E+02 0.0088 23.6 8.1 95 253-365 56-164 (325)
112 KOG2048 WD40 repeat protein [G 27.3 4.8E+02 0.01 26.6 9.1 111 220-346 437-554 (691)
113 COG4946 Uncharacterized protei 27.0 6.1E+02 0.013 24.9 12.4 140 187-348 287-439 (668)
114 KOG0294 WD40 repeat-containing 27.0 5E+02 0.011 23.9 11.6 95 215-327 45-143 (362)
115 cd01262 PH_PDK1 3-Phosphoinosi 26.8 1.7E+02 0.0036 21.3 4.5 24 322-345 16-39 (89)
116 PF09826 Beta_propel: Beta pro 25.7 6.8E+02 0.015 24.9 12.5 122 235-368 247-388 (521)
117 KOG4547 WD40 repeat-containing 24.4 7.1E+02 0.015 24.8 14.3 107 235-354 79-185 (541)
118 KOG0292 Vesicle coat complex C 24.1 2.7E+02 0.0059 29.5 7.0 72 270-343 209-283 (1202)
119 PRK11028 6-phosphogluconolacto 23.7 5.5E+02 0.012 23.2 14.5 114 222-347 136-267 (330)
120 KOG3926 F-box proteins [Amino 23.0 39 0.00084 30.0 0.9 40 9-48 201-241 (332)
121 PF15408 PH_7: Pleckstrin homo 22.8 18 0.0004 25.8 -0.9 22 29-50 78-99 (104)
122 KOG0266 WD40 repeat-containing 22.6 7.1E+02 0.015 24.1 12.3 70 272-345 253-323 (456)
123 PF07250 Glyoxal_oxid_N: Glyox 22.5 5.4E+02 0.012 22.7 11.6 163 186-364 45-222 (243)
124 PLN00181 protein SPA1-RELATED; 22.2 9.2E+02 0.02 25.3 21.5 66 275-342 670-740 (793)
125 KOG0647 mRNA export protein (c 20.9 6.5E+02 0.014 23.0 8.4 61 287-351 48-113 (347)
126 PF00397 WW: WW domain; Inter 20.8 1.2E+02 0.0025 16.9 2.3 15 331-345 13-27 (31)
127 PRK10115 protease 2; Provision 20.4 9.7E+02 0.021 24.8 20.4 117 219-348 276-402 (686)
128 KOG4152 Host cell transcriptio 20.3 8.6E+02 0.019 24.2 10.3 126 163-298 212-362 (830)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2.6e-35 Score=259.15 Aligned_cols=216 Identities=24% Similarity=0.362 Sum_probs=162.6
Q ss_pred EeeecceEEEeecCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcce
Q 036281 109 IGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSH 188 (371)
Q Consensus 109 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 188 (371)
++|||||||+.....+ +||||+||+++.||+++.... +. ....++||||+.+++||||++...... .....
T Consensus 1 ~~sCnGLlc~~~~~~~-~V~NP~T~~~~~LP~~~~~~~-~~--~~~~~~~G~d~~~~~YKVv~~~~~~~~-----~~~~~ 71 (230)
T TIGR01640 1 VVPCDGLICFSYGKRL-VVWNPSTGQSRWLPTPKSRRS-NK--ESDTYFLGYDPIEKQYKVLCFSDRSGN-----RNQSE 71 (230)
T ss_pred CcccceEEEEecCCcE-EEECCCCCCEEecCCCCCccc-cc--ccceEEEeecccCCcEEEEEEEeecCC-----CCCcc
Confidence 4799999999887777 999999999999997754211 11 112589999999999999999754211 12578
Q ss_pred EEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEE-EeCCCCCCCCCccccc
Q 036281 189 VAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQ-EIKGPSVPQTTTYYQS 265 (371)
Q Consensus 189 ~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~-~i~~P~~~~~~~~~~~ 265 (371)
++||++++++||.++.. .+.......+|++||++||++.... ....|++||+++|+|+ .+++|.....
T Consensus 72 ~~Vys~~~~~Wr~~~~~---~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~------ 142 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECS---PPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSD------ 142 (230)
T ss_pred EEEEEeCCCCccccccC---CCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccc------
Confidence 99999999999999732 1211122248999999999997542 1237999999999999 5888875432
Q ss_pred CCCcceEEEeCCeEEEEecCCCCCEEEEEEeeC---CceeEEEEecC--CCcc---eeeeEEeeCCEEEEEEcC--Ce-E
Q 036281 266 VKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKG---GFWIKHLTFGP--FIET---YQPLGFWRKDEFLLESSD--KR-V 334 (371)
Q Consensus 266 ~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~---~~W~~~~~i~~--~~~~---~~~~~~~~~~~il~~~~~--~~-l 334 (371)
......|++++|+||++........++||+|++ ..|+|.++|+. ...+ ..|+++.++|+|++.... .. +
T Consensus 143 ~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~ 222 (230)
T TIGR01640 143 SVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYI 222 (230)
T ss_pred cccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEE
Confidence 013467999999999977533345699999997 57999999973 2222 348888899999998754 34 9
Q ss_pred EEEeCCCC
Q 036281 335 ILYDSRYH 342 (371)
Q Consensus 335 ~~yd~~~~ 342 (371)
++||++++
T Consensus 223 ~~y~~~~~ 230 (230)
T TIGR01640 223 FYYNVGEN 230 (230)
T ss_pred EEEeccCC
Confidence 99999885
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.68 E-value=1e-15 Score=121.80 Aligned_cols=105 Identities=23% Similarity=0.417 Sum_probs=81.8
Q ss_pred eEEECceEEEEEecC-CCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCC--CCEEEEE
Q 036281 218 NVYLNGYCYWVVCRP-DYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKF--AHSFELW 294 (371)
Q Consensus 218 ~v~~~G~lywl~~~~-~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~--~~~~~iW 294 (371)
|+++||++||++... .....|++||+++|+|+.|++|.... .......|++++|+||++..... ...++||
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~------~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iW 74 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY------SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIW 74 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec------cccCccEEEEeCCeEEEEEecCCCCcceEEEE
Confidence 589999999999872 25689999999999999999992111 11256789999999999764332 3579999
Q ss_pred EeeC---CceeEEEEecCCC-------cceeeeEEeeCCEEEEE
Q 036281 295 IMKG---GFWIKHLTFGPFI-------ETYQPLGFWRKDEFLLE 328 (371)
Q Consensus 295 ~L~~---~~W~~~~~i~~~~-------~~~~~~~~~~~~~il~~ 328 (371)
+|+| ++|++.+.+-|.. ....++++.++|+|++.
T Consensus 75 vLeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 75 VLEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred EeeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 9998 7899987765432 23567888889999887
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.65 E-value=5.6e-15 Score=122.55 Aligned_cols=138 Identities=20% Similarity=0.327 Sum_probs=98.1
Q ss_pred eEEECceEEEEEecCCCC--cEEEEEECCCceE-EEeCCCCCCCCCcccccCCCcceEEE-eCCeEEEEecCCCCCEEEE
Q 036281 218 NVYLNGYCYWVVCRPDYS--KAILAFSMSNEVF-QEIKGPSVPQTTTYYQSVKTPWMLGT-YDDCLSLLYSDKFAHSFEL 293 (371)
Q Consensus 218 ~v~~~G~lywl~~~~~~~--~~Il~fD~~~e~~-~~i~~P~~~~~~~~~~~~~~~~~L~~-~~g~L~l~~~~~~~~~~~i 293 (371)
+|++||++||++...... ..|++||+++|+| +.+++|..... ......|.+ .+|+||++........++|
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~------~~~~~~L~~v~~~~L~~~~~~~~~~~~~I 74 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDD------DDDSVSLSVVRGDCLCVLYQCDETSKIEI 74 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCc------cCCEEEEEEecCCEEEEEEeccCCccEEE
Confidence 599999999999876422 2799999999999 88999987652 114566754 5789999764455667999
Q ss_pred EEeeC-----CceeEEEEecCCC--cc-----eeeeEEeeCCEEEEEEc--C-----CeEEEEeCCCCeEEEEEEecc--
Q 036281 294 WIMKG-----GFWIKHLTFGPFI--ET-----YQPLGFWRKDEFLLESS--D-----KRVILYDSRYHEMRDLGITGL-- 352 (371)
Q Consensus 294 W~L~~-----~~W~~~~~i~~~~--~~-----~~~~~~~~~~~il~~~~--~-----~~l~~yd~~~~~~~~v~~~~~-- 352 (371)
|+|++ .+|+|.++|+... .. ...+.+.+++++++... . ..++.|+ +++..+++.+...
T Consensus 75 Wvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~ 153 (164)
T PF07734_consen 75 WVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSS 153 (164)
T ss_pred EEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCC
Confidence 99994 6899999998332 11 12234455667776632 1 4588888 7788888877432
Q ss_pred eeEE-EEeEee
Q 036281 353 WFSV-HILKES 362 (371)
Q Consensus 353 ~~~~-~~y~~S 362 (371)
.++. ..|+||
T Consensus 154 ~~~~~~~YvpS 164 (164)
T PF07734_consen 154 CWPSICNYVPS 164 (164)
T ss_pred CCCCEEEECCC
Confidence 2344 888887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.37 E-value=1.7e-10 Score=105.69 Aligned_cols=323 Identities=12% Similarity=0.077 Sum_probs=160.0
Q ss_pred ccCCCCCHHHHHHHHhcCCcc-ccceeeecccchhhhcCChHHHHHHhccCCCCCEEEEEeecCCCCCCCCCCceeEEEE
Q 036281 8 KTLGDLSDDMMIETLSRLPVK-SLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRDPFDDLITYFSV 86 (371)
Q Consensus 8 ~~~~~LP~dll~~IL~rLP~k-sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (371)
..|+.||+|||..|..|||.+ +++|||+|||+||+.+.... +......+ +.+++.... |. .+ +
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~~~~~~~-~~~~~~~~~-~~--~~---------~ 65 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KKNPFRTR-PLILFNPIN-PS--ET---------L 65 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---ccCCcccc-cccccCccc-CC--CC---------c
Confidence 458999999999999999855 89999999999999876410 00000111 222211100 00 00 0
Q ss_pred ccCCCcccccCcCCCCccceEE---EeeecceEEEee-c---CCceEEEeccccccccCCCCCCCCCCCCCC-ceeeEEE
Q 036281 87 FPDRTLTDLHFQDLEPIMRGIH---IGPYDGIFCLLK-S---HTLINLWNVSLNEYRGLPECRPRLPCYTRT-HYANIAL 158 (371)
Q Consensus 87 ~~~~~~~~~~~~~~~~p~~~~~---~~s~~GLl~~~~-~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~-~~~~~~~ 158 (371)
.+.+..+......+....-+.+ -++..|+|.-.. + .+. .+.||+++....+|+.......+.-. ....+.+
T Consensus 66 ~~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~-~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l 144 (373)
T PLN03215 66 TDDRSYISRPGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRF-HLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQV 144 (373)
T ss_pred cccccccccccceeeeeEEEEeecCCCCCCCcEEEEeccccCCcc-EecCccccCccCCCCccceeeeeEEEEccceEEE
Confidence 0000000000000000000111 145678887654 2 466 99999999988777543332222100 0001111
Q ss_pred -eccCC---CCCeEEEEEeeEecCCCCCCCCcceEEEEEcC------CCceeecCccccccceeccccceEEECceEEEE
Q 036281 159 -GLDLV---TGDFKLVLILTLWNDQRDSFHDFSHVAVYNFS------TNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWV 228 (371)
Q Consensus 159 -g~d~~---~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~------~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl 228 (371)
+.+.. ...|+-+.+......+ ......+-|+..+ .++|..++.. ... ...-++.+|.+|-+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~--~~~----~~DIi~~kGkfYAv 215 (373)
T PLN03215 145 LDWAKRRETRPGYQRSALVKVKEGD---NHRDGVLGIGRDGKINYWDGNVLKALKQM--GYH----FSDIIVHKGQTYAL 215 (373)
T ss_pred EecccccccccceeEEEEEEeecCC---CcceEEEEEeecCcEeeecCCeeeEccCC--Cce----eeEEEEECCEEEEE
Confidence 11100 0113212221111110 0001222333222 3678877521 111 23669999999998
Q ss_pred EecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecC--C-------------CCCEEEE
Q 036281 229 VCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD--K-------------FAHSFEL 293 (371)
Q Consensus 229 ~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~--~-------------~~~~~~i 293 (371)
...+ .+.++|.+- +.+.+..+-. .....+ ..+....|+|..|+|.++... . ....++|
T Consensus 216 D~~G----~l~~i~~~l-~i~~v~~~i~-~~~~~g-~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~V 288 (373)
T PLN03215 216 DSIG----IVYWINSDL-EFSRFGTSLD-ENITDG-CWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKV 288 (373)
T ss_pred cCCC----eEEEEecCC-ceeeecceec-ccccCC-cccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEE
Confidence 6544 577777432 2222221111 000000 001346799999999996531 1 1357899
Q ss_pred EEeeC--CceeEEEEecCCCc---ceeeeEE-------eeCCEEEEEEcCCeEEEEeCCCCeEEEEEEe--cceeEE-EE
Q 036281 294 WIMKG--GFWIKHLTFGPFIE---TYQPLGF-------WRKDEFLLESSDKRVILYDSRYHEMRDLGIT--GLWFSV-HI 358 (371)
Q Consensus 294 W~L~~--~~W~~~~~i~~~~~---~~~~~~~-------~~~~~il~~~~~~~l~~yd~~~~~~~~v~~~--~~~~~~-~~ 358 (371)
+.++. ..|+++.+++-..- ....+++ .+.+-|++. .+....+||++.++...+... +...++ ..
T Consensus 289 fklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-dd~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~ 367 (373)
T PLN03215 289 YKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-EDTMPKVFKLDNGNGSSIETTISESSQSSFEM 367 (373)
T ss_pred EEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-CCCcceEEECCCCCccceEeecCccccchhee
Confidence 99987 88999888763210 0111111 124557776 456688999999997766443 222233 66
Q ss_pred eEeeee
Q 036281 359 LKESLI 364 (371)
Q Consensus 359 y~~Sl~ 364 (371)
|++|++
T Consensus 368 ~~~~~~ 373 (373)
T PLN03215 368 FVPSFL 373 (373)
T ss_pred eccccC
Confidence 776653
No 5
>PHA02713 hypothetical protein; Provisional
Probab=98.95 E-value=1.8e-07 Score=92.57 Aligned_cols=192 Identities=10% Similarity=0.041 Sum_probs=121.0
Q ss_pred EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281 126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF 205 (371)
Q Consensus 126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~ 205 (371)
..+||.+++|..+|+.+..+. .++.+. . +-||..++.... ......+|.|+..+++|..++.
T Consensus 323 ~~Yd~~~n~W~~~~~m~~~R~--------~~~~~~--~--~g~IYviGG~~~-----~~~~~sve~Ydp~~~~W~~~~~- 384 (557)
T PHA02713 323 YKINIENKIHVELPPMIKNRC--------RFSLAV--I--DDTIYAIGGQNG-----TNVERTIECYTMGDDKWKMLPD- 384 (557)
T ss_pred EEEECCCCeEeeCCCCcchhh--------ceeEEE--E--CCEEEEECCcCC-----CCCCceEEEEECCCCeEEECCC-
Confidence 899999999999998874321 122111 1 125666553211 1124579999999999999874
Q ss_pred ccccceeccccceEEECceEEEEEecCC--------------------CCcEEEEEECCCceEEEeC-CCCCCCCCcccc
Q 036281 206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD--------------------YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQ 264 (371)
Q Consensus 206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--------------------~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~ 264 (371)
++........+.++|.+|-+..... ....+.+||+++++|+.+. +|...
T Consensus 385 ---mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r------- 454 (557)
T PHA02713 385 ---MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT------- 454 (557)
T ss_pred ---CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-------
Confidence 3333223466889999999875421 0246899999999999874 22221
Q ss_pred cCCCcceEEEeCCeEEEEecCCC----CCEEEEEEeeC-CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCC---eEEE
Q 036281 265 SVKTPWMLGTYDDCLSLLYSDKF----AHSFELWIMKG-GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDK---RVIL 336 (371)
Q Consensus 265 ~~~~~~~L~~~~g~L~l~~~~~~----~~~~~iW~L~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~---~l~~ 336 (371)
....++.++|+|+++.-... ...++.+-.+. ..|+....++ .+.......+. +|+|++..+.. .+-.
T Consensus 455 ---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 455 ---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTILH-DNTIMMLHCYESYMLQDT 529 (557)
T ss_pred ---ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeEEE-CCEEEEEeeecceeehhh
Confidence 23457889999999863111 12334444443 4799876553 22122223332 77888875422 4889
Q ss_pred EeCCCCeEEEEEEe
Q 036281 337 YDSRYHEMRDLGIT 350 (371)
Q Consensus 337 yd~~~~~~~~v~~~ 350 (371)
||++|++|..+.-+
T Consensus 530 yd~~~~~W~~~~~~ 543 (557)
T PHA02713 530 FNVYTYEWNHICHQ 543 (557)
T ss_pred cCcccccccchhhh
Confidence 99999999988443
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.78 E-value=1.5e-09 Score=69.77 Aligned_cols=42 Identities=26% Similarity=0.608 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHH
Q 036281 10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIY 51 (371)
Q Consensus 10 ~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~ 51 (371)
+..||+|++.+||..||++++.++..|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 468999999999999999999999999999999998885544
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=98.74 E-value=1.4e-06 Score=84.99 Aligned_cols=182 Identities=12% Similarity=0.034 Sum_probs=115.2
Q ss_pred EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281 126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF 205 (371)
Q Consensus 126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~ 205 (371)
..+||.+++|..+|+++..+. . ++... -+-+|..++.... ...+|.|+..+++|..++.
T Consensus 290 ~~Ydp~~~~W~~~~~m~~~r~-----~---~~~v~----~~~~iYviGG~~~--------~~sve~ydp~~n~W~~~~~- 348 (480)
T PHA02790 290 IAVNYISNNWIPIPPMNSPRL-----Y---ASGVP----ANNKLYVVGGLPN--------PTSVERWFHGDAAWVNMPS- 348 (480)
T ss_pred EEEECCCCEEEECCCCCchhh-----c---ceEEE----ECCEEEEECCcCC--------CCceEEEECCCCeEEECCC-
Confidence 789999999999998764321 1 11111 1135555543211 2458999999999999874
Q ss_pred ccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecC
Q 036281 206 EMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD 285 (371)
Q Consensus 206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~ 285 (371)
++.......++.++|.+|-+.........+-.||+++++|+.++.+.... .....+..+|+|+++..
T Consensus 349 ---l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r---------~~~~~~~~~~~IYv~GG- 415 (480)
T PHA02790 349 ---LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH---------YKSCALVFGRRLFLVGR- 415 (480)
T ss_pred ---CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc---------ccceEEEECCEEEEECC-
Confidence 33322234678999999998764322346788999999999874322111 23456679999999762
Q ss_pred CCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEEE
Q 036281 286 KFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRDL 347 (371)
Q Consensus 286 ~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v 347 (371)
..+++-.+...|+..-.+ +.+......++ -+|+|++..+ ...+-.||+++++|...
T Consensus 416 ----~~e~ydp~~~~W~~~~~m-~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 416 ----NAEFYCESSNTWTLIDDP-IYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ----ceEEecCCCCcEeEcCCC-CCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 234444444789976543 22212222333 3678888743 14588999999999753
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.73 E-value=1.2e-06 Score=86.85 Aligned_cols=192 Identities=11% Similarity=0.114 Sum_probs=117.3
Q ss_pred EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281 126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF 205 (371)
Q Consensus 126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~ 205 (371)
..+||.+++|..+++.+.... ..+.+. . +-+|+.++..... ......++.|+..++.|..++.
T Consensus 275 ~~yd~~~~~W~~l~~mp~~r~--------~~~~a~--l--~~~IYviGG~~~~----~~~~~~v~~Yd~~~n~W~~~~~- 337 (557)
T PHA02713 275 LVYNINTMEYSVISTIPNHII--------NYASAI--V--DNEIIIAGGYNFN----NPSLNKVYKINIENKIHVELPP- 337 (557)
T ss_pred EEEeCCCCeEEECCCCCcccc--------ceEEEE--E--CCEEEEEcCCCCC----CCccceEEEEECCCCeEeeCCC-
Confidence 789999999999987774311 111111 1 1245555432100 1124578999999999998874
Q ss_pred ccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEE
Q 036281 206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLL 282 (371)
Q Consensus 206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~ 282 (371)
++........+.++|.+|-+..... ....+-+||+.+++|+.+. +|... .....+.++|+|+++
T Consensus 338 ---m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r----------~~~~~~~~~g~IYvi 404 (557)
T PHA02713 338 ---MIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL----------SSYGMCVLDQYIYII 404 (557)
T ss_pred ---CcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc----------ccccEEEECCEEEEE
Confidence 3332223467899999999986532 2346899999999999874 34332 234567889999997
Q ss_pred ecCCC---------------------CCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEcC-------CeE
Q 036281 283 YSDKF---------------------AHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSD-------KRV 334 (371)
Q Consensus 283 ~~~~~---------------------~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-------~~l 334 (371)
.-... ..+++.+-.+...|+.+-.+. .+......++ -+|+|++..+. ..+
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~v 482 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCI 482 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-cccccCcEEE-ECCEEEEEeCCCCCCccceeE
Confidence 63111 122333333337888655432 1112222333 36788887531 236
Q ss_pred EEEeCCC-CeEEEEEE
Q 036281 335 ILYDSRY-HEMRDLGI 349 (371)
Q Consensus 335 ~~yd~~~-~~~~~v~~ 349 (371)
..||+++ ++|+.+.-
T Consensus 483 e~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 483 FRYNTNTYNGWELITT 498 (557)
T ss_pred EEecCCCCCCeeEccc
Confidence 7999999 89998743
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.71 E-value=1.1e-06 Score=87.00 Aligned_cols=207 Identities=10% Similarity=0.106 Sum_probs=132.9
Q ss_pred EEEeeecceEEEee--c------CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecC
Q 036281 107 IHIGPYDGIFCLLK--S------HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWND 178 (371)
Q Consensus 107 ~~~~s~~GLl~~~~--~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~ 178 (371)
.-++..+|.|-+.- + +.. ..+||.+.+|..+|+....+. .+|.+. -..++.+++....
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~v-e~YD~~~~~W~~~a~M~~~R~--------~~~v~~----l~g~iYavGG~dg- 391 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSV-ERYDPRTNQWTPVAPMNTKRS--------DFGVAV----LDGKLYAVGGFDG- 391 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceE-EEecCCCCceeccCCccCccc--------cceeEE----ECCEEEEEecccc-
Confidence 34555566554332 1 345 899999999999999885321 122221 2355555553321
Q ss_pred CCCCCCCcceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeC-CC
Q 036281 179 QRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK-GP 254 (371)
Q Consensus 179 ~~~~~~~~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~-~P 254 (371)
......+|.|+..++.|..++.. +.......++.++|.+|-+...+. .-..+-+||+.+++|+.++ ++
T Consensus 392 ----~~~l~svE~YDp~~~~W~~va~m----~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~ 463 (571)
T KOG4441|consen 392 ----EKSLNSVECYDPVTNKWTPVAPM----LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN 463 (571)
T ss_pred ----ccccccEEEecCCCCcccccCCC----CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc
Confidence 23366899999999999999743 332224577899999999987543 2378999999999999873 23
Q ss_pred CCCCCCcccccCCCcceEEEeCCeEEEEecCCC---CCEEEEEEeeCCceeEEEEecCCCcceeeeEE-eeCCEEEEEEc
Q 036281 255 SVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKF---AHSFELWIMKGGFWIKHLTFGPFIETYQPLGF-WRKDEFLLESS 330 (371)
Q Consensus 255 ~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~---~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~-~~~~~il~~~~ 330 (371)
... ....++.++|+|+++.-... ..+++..-.+...|+.+..+.... ...++ .-++++++..+
T Consensus 464 ~~R----------~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r---s~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 464 TRR----------SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR---SAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ccc----------ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc---ccccEEEECCEEEEEec
Confidence 222 34558899999999773222 333444444447898885443221 11222 23667777643
Q ss_pred ------CCeEEEEeCCCCeEEEEE
Q 036281 331 ------DKRVILYDSRYHEMRDLG 348 (371)
Q Consensus 331 ------~~~l~~yd~~~~~~~~v~ 348 (371)
-..+-.||+++++|....
T Consensus 531 ~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 531 FDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred ccCccccceeEEcCCCCCceeeCC
Confidence 246889999999998873
No 10
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.67 E-value=2.9e-09 Score=68.75 Aligned_cols=45 Identities=38% Similarity=0.600 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHHHHh
Q 036281 10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHL 54 (371)
Q Consensus 10 ~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~~ 54 (371)
+..||+|++.+||.+|+.+++++++.|||+|++++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 467999999999999999999999999999999999999876543
No 11
>PHA03098 kelch-like protein; Provisional
Probab=98.65 E-value=1.6e-06 Score=85.91 Aligned_cols=192 Identities=10% Similarity=0.111 Sum_probs=117.6
Q ss_pred CceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeec
Q 036281 123 TLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDL 202 (371)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~ 202 (371)
.+ +.+||.|++|..+|+.+..+. . .+... .. =+++.++.... ......+++|+..+++|+..
T Consensus 312 ~v-~~yd~~~~~W~~~~~~~~~R~-----~---~~~~~--~~--~~lyv~GG~~~-----~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 312 SV-VSYDTKTKSWNKVPELIYPRK-----N---PGVTV--FN--NRIYVIGGIYN-----SISLNTVESWKPGESKWREE 373 (534)
T ss_pred cE-EEEeCCCCeeeECCCCCcccc-----c---ceEEE--EC--CEEEEEeCCCC-----CEecceEEEEcCCCCceeeC
Confidence 45 899999999999998764211 1 11111 11 23444443211 11245789999999999988
Q ss_pred CccccccceeccccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCe
Q 036281 203 KGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDC 278 (371)
Q Consensus 203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~ 278 (371)
+.. |........+.++|.+|-+..... ....+..||+.+++|+.+. +|... .....+..+|+
T Consensus 374 ~~l----p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----------~~~~~~~~~~~ 439 (534)
T PHA03098 374 PPL----IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----------YGGCAIYHDGK 439 (534)
T ss_pred CCc----CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----------cCceEEEECCE
Confidence 643 332223456788999999876321 2256899999999999874 33322 22345678999
Q ss_pred EEEEecCCCCC----EEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEE
Q 036281 279 LSLLYSDKFAH----SFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRD 346 (371)
Q Consensus 279 L~l~~~~~~~~----~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~ 346 (371)
|+++.-..... .-.+|..+- ..|+..-.++ .+......++ -+++|++..+ ...+..||+++++|+.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTL 517 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-cccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEe
Confidence 98876211111 112566554 7898764332 2212222233 3678877643 2469999999999987
Q ss_pred EE
Q 036281 347 LG 348 (371)
Q Consensus 347 v~ 348 (371)
+.
T Consensus 518 ~~ 519 (534)
T PHA03098 518 FC 519 (534)
T ss_pred cC
Confidence 73
No 12
>PLN02153 epithiospecifier protein
Probab=98.62 E-value=5.5e-06 Score=77.27 Aligned_cols=207 Identities=13% Similarity=0.097 Sum_probs=116.7
Q ss_pred CceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeec
Q 036281 123 TLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDL 202 (371)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~ 202 (371)
.+ +++||.+++|..+|+.... ++.. . .+++.... +=||+.+..... ......+++|+..+++|+.+
T Consensus 51 ~~-~~yd~~~~~W~~~~~~~~~-p~~~---~--~~~~~~~~--~~~iyv~GG~~~-----~~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 51 DL-YVFDFNTHTWSIAPANGDV-PRIS---C--LGVRMVAV--GTKLYIFGGRDE-----KREFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred cE-EEEECCCCEEEEcCccCCC-CCCc---c--CceEEEEE--CCEEEEECCCCC-----CCccCcEEEEECCCCEEEEe
Confidence 45 9999999999998865321 1100 0 11111101 124555543211 11234789999999999988
Q ss_pred Ccccc-ccceeccccceEEECceEEEEEecCCC--------CcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEE
Q 036281 203 KGFEM-RFDYMVDRIYNVYLNGYCYWVVCRPDY--------SKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLG 273 (371)
Q Consensus 203 ~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~--------~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~ 273 (371)
+.... ..|........+..+|.+|-+...... -..|.+||+.+.+|..++.+..... .+....++
T Consensus 117 ~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~------~r~~~~~~ 190 (341)
T PLN02153 117 TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE------KRGGAGFA 190 (341)
T ss_pred ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC------CCCcceEE
Confidence 64310 112211134567889999988754210 1358899999999998764321100 11234566
Q ss_pred EeCCeEEEEecCC---------CCCEEEEEEee--CCceeEEEEec--CCCcceeeeEEeeCCEEEEEEcC---------
Q 036281 274 TYDDCLSLLYSDK---------FAHSFELWIMK--GGFWIKHLTFG--PFIETYQPLGFWRKDEFLLESSD--------- 331 (371)
Q Consensus 274 ~~~g~L~l~~~~~---------~~~~~~iW~L~--~~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~~--------- 331 (371)
..+|+++++.-.. ....-++++++ ...|+++-... |.+.......+ -+++|++....
T Consensus 191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcccCCcccccc
Confidence 7899998864110 00112355554 37899876543 32222222222 25677665321
Q ss_pred ------CeEEEEeCCCCeEEEEEEe
Q 036281 332 ------KRVILYDSRYHEMRDLGIT 350 (371)
Q Consensus 332 ------~~l~~yd~~~~~~~~v~~~ 350 (371)
+.++.||+++++|+.+...
T Consensus 270 ~~~~~~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 270 GPGTLSNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred ccccccccEEEEEcCccEEEeccCC
Confidence 2689999999999988643
No 13
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.61 E-value=3.6e-06 Score=83.27 Aligned_cols=192 Identities=12% Similarity=0.082 Sum_probs=127.0
Q ss_pred EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281 126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF 205 (371)
Q Consensus 126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~ 205 (371)
...||.+++|..+.+.+..+. ..+.+.-. -+|..++.... +......+++|++.+++|..++..
T Consensus 304 e~yd~~~~~w~~~a~m~~~r~--------~~~~~~~~----~~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~a~M 367 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLAPMPSPRC--------RVGVAVLN----GKLYVVGGYDS----GSDRLSSVERYDPRTNQWTPVAPM 367 (571)
T ss_pred EEecCCcCcEeecCCCCcccc--------cccEEEEC----CEEEEEccccC----CCcccceEEEecCCCCceeccCCc
Confidence 789999999999988875322 13333221 15555543321 123367899999999999998743
Q ss_pred ccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEE
Q 036281 206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLL 282 (371)
Q Consensus 206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~ 282 (371)
.........+.++|.+|-+...+. ....|-.||+.+++|+.+. ++... .....++++|+|+++
T Consensus 368 ----~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r----------~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 368 ----NTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR----------SGHGVAVLGGKLYII 433 (571)
T ss_pred ----cCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce----------eeeEEEEECCEEEEE
Confidence 333224467899999999987653 3457999999999999874 33321 345678899999997
Q ss_pred ec-CCCC---CEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEcC------CeEEEEeCCCCeEEEEEE
Q 036281 283 YS-DKFA---HSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSD------KRVILYDSRYHEMRDLGI 349 (371)
Q Consensus 283 ~~-~~~~---~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~------~~l~~yd~~~~~~~~v~~ 349 (371)
.- +... .+++..--....|+..-.+.-.. ....+++. ++.|++..+. ..+-.||+++++|..+..
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-SGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCccccc-ccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 63 1222 34444444437888876653221 23334443 6788887542 348899999999999953
No 14
>PLN02193 nitrile-specifier protein
Probab=98.59 E-value=1.6e-05 Score=77.32 Aligned_cols=205 Identities=10% Similarity=0.086 Sum_probs=119.5
Q ss_pred CceEEEeccccccccCCCCCCCCCCCCCCceeeEEE-eccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceee
Q 036281 123 TLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIAL-GLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRD 201 (371)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~-g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~ 201 (371)
.+ +++||.+.+|..+|+.... +... ...... .++ =+++.+..... ......+++|++.+++|+.
T Consensus 194 ~v-~~yD~~~~~W~~~~~~g~~-P~~~---~~~~~~v~~~-----~~lYvfGG~~~-----~~~~ndv~~yD~~t~~W~~ 258 (470)
T PLN02193 194 HL-YVFDLETRTWSISPATGDV-PHLS---CLGVRMVSIG-----STLYVFGGRDA-----SRQYNGFYSFDTTTNEWKL 258 (470)
T ss_pred cE-EEEECCCCEEEeCCCCCCC-CCCc---ccceEEEEEC-----CEEEEECCCCC-----CCCCccEEEEECCCCEEEE
Confidence 35 8999999999987754211 1100 001111 111 13444432111 1124578999999999999
Q ss_pred cCccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeE
Q 036281 202 LKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCL 279 (371)
Q Consensus 202 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L 279 (371)
++... ..|........+..++.+|.+..... ....+.+||+.+.+|+.++.|..... .+....++..+|++
T Consensus 259 l~~~~-~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~------~R~~~~~~~~~gki 331 (470)
T PLN02193 259 LTPVE-EGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFS------IRGGAGLEVVQGKV 331 (470)
T ss_pred cCcCC-CCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCC------CCCCcEEEEECCcE
Confidence 86431 11221113456778999999875431 23458899999999998865432111 11234566789999
Q ss_pred EEEecCCCCCEEEEEEeeC--CceeEEEEec--CCCcceeeeEEeeCCEEEEEEcC---------------CeEEEEeCC
Q 036281 280 SLLYSDKFAHSFELWIMKG--GFWIKHLTFG--PFIETYQPLGFWRKDEFLLESSD---------------KRVILYDSR 340 (371)
Q Consensus 280 ~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~~---------------~~l~~yd~~ 340 (371)
+++.-......-++|+++- ..|++...+. |.+.......+ -+++|++.... ..++.||++
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 8865211122245666665 7899876553 33322222232 35677765321 248999999
Q ss_pred CCeEEEEEEe
Q 036281 341 YHEMRDLGIT 350 (371)
Q Consensus 341 ~~~~~~v~~~ 350 (371)
|++|+.+...
T Consensus 411 t~~W~~~~~~ 420 (470)
T PLN02193 411 TLQWERLDKF 420 (470)
T ss_pred cCEEEEcccC
Confidence 9999988643
No 15
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.59 E-value=8.9e-09 Score=63.99 Aligned_cols=39 Identities=36% Similarity=0.736 Sum_probs=36.9
Q ss_pred CCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHH
Q 036281 13 LSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIY 51 (371)
Q Consensus 13 LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~ 51 (371)
||+|++.+||.+|+++++.+++.|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.48 E-value=3.2e-05 Score=71.55 Aligned_cols=150 Identities=12% Similarity=0.114 Sum_probs=94.2
Q ss_pred cceEEEEEcCCCce----eecCccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-CCCCCC
Q 036281 186 FSHVAVYNFSTNSW----RDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-GPSVPQ 258 (371)
Q Consensus 186 ~~~~~vy~~~~~~W----r~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~P~~~~ 258 (371)
...++.|+..++.| +.++ ++|.......++.++|.+|-+..... ....+-+||+.+++|+.++ +|....
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~----~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r 162 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIG----NLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR 162 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcC----CCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence 45789999999988 4444 33433224466888999999876421 2357899999999999885 453221
Q ss_pred CCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeC--CceeEEEEec--CCC--cceeeeEEeeCCEEEEEEc--
Q 036281 259 TTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFG--PFI--ETYQPLGFWRKDEFLLESS-- 330 (371)
Q Consensus 259 ~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~--~~~--~~~~~~~~~~~~~il~~~~-- 330 (371)
....++..+|+|+++.-.......++|..+- ..|++.-.+. +.+ .......+..+++|++...
T Consensus 163 ---------~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 163 ---------VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ---------CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 2334567899999976322222345566654 7898754431 111 0111112233567776532
Q ss_pred ------------------------------------CCeEEEEeCCCCeEEEEE
Q 036281 331 ------------------------------------DKRVILYDSRYHEMRDLG 348 (371)
Q Consensus 331 ------------------------------------~~~l~~yd~~~~~~~~v~ 348 (371)
...+..||+++++|..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 234 KDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred HHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 146999999999999885
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.47 E-value=4.5e-05 Score=71.32 Aligned_cols=202 Identities=14% Similarity=0.130 Sum_probs=114.3
Q ss_pred CCceEEEec--cccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCC-CCCcceEEEEEcCCCc
Q 036281 122 HTLINLWNV--SLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDS-FHDFSHVAVYNFSTNS 198 (371)
Q Consensus 122 ~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~-~~~~~~~~vy~~~~~~ 198 (371)
+.. ++.++ .+++|..+|+.+.. ++. . ++...- +-+|..+.........+ ......++.|+..+++
T Consensus 29 ~~~-~~~d~~~~~~~W~~l~~~p~~-~R~---~---~~~~~~----~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 29 TSW-YKLDLKKPSKGWQKIADFPGG-PRN---Q---AVAAAI----DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred Cee-EEEECCCCCCCceECCCCCCC-Ccc---c---ceEEEE----CCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 345 77774 67889999877621 111 1 121111 12455554321110000 0123578999999999
Q ss_pred eeecCccccccceeccccceE-EECceEEEEEecCCC------------------------------------CcEEEEE
Q 036281 199 WRDLKGFEMRFDYMVDRIYNV-YLNGYCYWVVCRPDY------------------------------------SKAILAF 241 (371)
Q Consensus 199 Wr~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~------------------------------------~~~Il~f 241 (371)
|+.++. +.+.......++ .++|.+|-+...... ...+.+|
T Consensus 97 W~~~~~---~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Y 173 (346)
T TIGR03547 97 WQKLDT---RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSY 173 (346)
T ss_pred EecCCC---CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEE
Confidence 999862 122221112223 689999988653210 1469999
Q ss_pred ECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEEecC--CCCCEEEEEEee--C--CceeEEEEecCCCcc-
Q 036281 242 SMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD--KFAHSFELWIMK--G--GFWIKHLTFGPFIET- 313 (371)
Q Consensus 242 D~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~--~~~~~~~iW~L~--~--~~W~~~~~i~~~~~~- 313 (371)
|+.+.+|+.+. +|.... ....++..+|+|.++.-. ......++|..+ . ..|+..-.+. .+..
T Consensus 174 Dp~t~~W~~~~~~p~~~r---------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~-~~r~~ 243 (346)
T TIGR03547 174 DPSTNQWRNLGENPFLGT---------AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP-PPKSS 243 (346)
T ss_pred ECCCCceeECccCCCCcC---------CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC-CCCCC
Confidence 99999999884 342111 234567789999997621 122344566543 2 5898766542 2111
Q ss_pred -----eeeeEEeeCCEEEEEEcC-----------------------CeEEEEeCCCCeEEEEE
Q 036281 314 -----YQPLGFWRKDEFLLESSD-----------------------KRVILYDSRYHEMRDLG 348 (371)
Q Consensus 314 -----~~~~~~~~~~~il~~~~~-----------------------~~l~~yd~~~~~~~~v~ 348 (371)
.....+.-+++|++.... ..+-+||+++++|+.+.
T Consensus 244 ~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 244 SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 111122347788776431 14668999999998774
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.40 E-value=4.6e-05 Score=72.03 Aligned_cols=227 Identities=14% Similarity=0.120 Sum_probs=123.6
Q ss_pred cCCCCccceEEEeeecceEEEee---cCCceEEEecc--ccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEE
Q 036281 98 QDLEPIMRGIHIGPYDGIFCLLK---SHTLINLWNVS--LNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLI 172 (371)
Q Consensus 98 ~~~~~p~~~~~~~s~~GLl~~~~---~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~ 172 (371)
++++.|......+..++-|.+.- .... ++.++. +++|..+|+.+.. ++. . ++... ..+ +|+.+
T Consensus 23 ~~lP~~~~~~~~~~~~~~iyv~gG~~~~~~-~~~d~~~~~~~W~~l~~~p~~-~r~---~---~~~v~--~~~--~IYV~ 90 (376)
T PRK14131 23 PDLPVPFKNGTGAIDNNTVYVGLGSAGTSW-YKLDLNAPSKGWTKIAAFPGG-PRE---Q---AVAAF--IDG--KLYVF 90 (376)
T ss_pred CCCCcCccCCeEEEECCEEEEEeCCCCCeE-EEEECCCCCCCeEECCcCCCC-Ccc---c---ceEEE--ECC--EEEEE
Confidence 34444433334455566554432 2344 777775 5789988876521 111 1 11111 112 34444
Q ss_pred eeEecCCCCC-CCCcceEEEEEcCCCceeecCccccccceeccccceEE-ECceEEEEEecCC-----------------
Q 036281 173 LTLWNDQRDS-FHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVY-LNGYCYWVVCRPD----------------- 233 (371)
Q Consensus 173 ~~~~~~~~~~-~~~~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~----------------- 233 (371)
.........+ ......++.|+..+++|+.++.. .|.......++. .+|.+|-+.....
T Consensus 91 GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~---~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~ 167 (376)
T PRK14131 91 GGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR---SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDK 167 (376)
T ss_pred cCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC---CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccch
Confidence 3211100000 01135799999999999998631 122211223344 7999999975421
Q ss_pred -------------------CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEEec--CCCCCEE
Q 036281 234 -------------------YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYS--DKFAHSF 291 (371)
Q Consensus 234 -------------------~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~--~~~~~~~ 291 (371)
....+..||+.+.+|+.+. +|.... ....++..+++|+++.- .......
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---------~~~a~v~~~~~iYv~GG~~~~~~~~~ 238 (376)
T PRK14131 168 TPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT---------AGSAVVIKGNKLWLINGEIKPGLRTD 238 (376)
T ss_pred hhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC---------CcceEEEECCEEEEEeeeECCCcCCh
Confidence 0246999999999999874 343211 23456778999999762 1223456
Q ss_pred EEEEee--C--CceeEEEEecCCC------cceeeeEEeeCCEEEEEEcC-----------------------CeEEEEe
Q 036281 292 ELWIMK--G--GFWIKHLTFGPFI------ETYQPLGFWRKDEFLLESSD-----------------------KRVILYD 338 (371)
Q Consensus 292 ~iW~L~--~--~~W~~~~~i~~~~------~~~~~~~~~~~~~il~~~~~-----------------------~~l~~yd 338 (371)
++|..+ . ..|+++-.+.... ......++.-+++|++.... ..+-.||
T Consensus 239 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd 318 (376)
T PRK14131 239 AVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYA 318 (376)
T ss_pred hheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEE
Confidence 677554 1 6899877653211 01111123346778776421 1234799
Q ss_pred CCCCeEEEEE
Q 036281 339 SRYHEMRDLG 348 (371)
Q Consensus 339 ~~~~~~~~v~ 348 (371)
+++++|+.+.
T Consensus 319 ~~~~~W~~~~ 328 (376)
T PRK14131 319 LVNGKWQKVG 328 (376)
T ss_pred ecCCcccccC
Confidence 9999998774
No 19
>PHA03098 kelch-like protein; Provisional
Probab=98.25 E-value=5.8e-05 Score=74.87 Aligned_cols=190 Identities=11% Similarity=0.062 Sum_probs=113.1
Q ss_pred EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281 126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF 205 (371)
Q Consensus 126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~ 205 (371)
.-.|+.+++|..++..+.. + . ++... -+-+++.++..... ......+..|+..+++|..++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~---~---~---~~~~~----~~~~lyv~GG~~~~----~~~~~~v~~yd~~~~~W~~~~~~ 329 (534)
T PHA03098 267 ITNYSPLSEINTIIDIHYV---Y---C---FGSVV----LNNVIYFIGGMNKN----NLSVNSVVSYDTKTKSWNKVPEL 329 (534)
T ss_pred eecchhhhhcccccCcccc---c---c---ceEEE----ECCEEEEECCCcCC----CCeeccEEEEeCCCCeeeECCCC
Confidence 4578888998888755421 0 1 11110 11234444321111 11234689999999999988643
Q ss_pred ccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEE
Q 036281 206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLL 282 (371)
Q Consensus 206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~ 282 (371)
+........+.++|.+|-+..... ....+-.||+.+.+|+.+. +|.+. .....+..+|++.++
T Consensus 330 ----~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r----------~~~~~~~~~~~iYv~ 395 (534)
T PHA03098 330 ----IYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR----------YNPCVVNVNNLIYVI 395 (534)
T ss_pred ----CcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC----------ccceEEEECCEEEEE
Confidence 222223467889999999886532 2346889999999999874 34332 234456789999997
Q ss_pred ecC--CC--CCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEc---------CCeEEEEeCCCCeEEEEE
Q 036281 283 YSD--KF--AHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESS---------DKRVILYDSRYHEMRDLG 348 (371)
Q Consensus 283 ~~~--~~--~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~---------~~~l~~yd~~~~~~~~v~ 348 (371)
.-. .. ...++.+-.+...|++...+ |.+.... -++..+++|++... ...+..||+++++|+.+.
T Consensus 396 GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 396 GGISKNDELLKTVECFSLNTNKWSKGSPL-PISHYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred CCcCCCCcccceEEEEeCCCCeeeecCCC-CccccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 631 11 23444444444789876443 2221122 22334677777642 124899999999999884
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.24 E-value=9e-05 Score=72.35 Aligned_cols=145 Identities=9% Similarity=0.075 Sum_probs=97.4
Q ss_pred cceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEEEeC-CCCCCCCCcccc
Q 036281 186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQ 264 (371)
Q Consensus 186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~ 264 (371)
...++.|+..++.|..++.. +........+.++|.+|-+.... ....+-.||+.+++|..++ +|...
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m----~~~r~~~~~v~~~~~iYviGG~~-~~~sve~ydp~~n~W~~~~~l~~~r------- 353 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPM----NSPRLYASGVPANNKLYVVGGLP-NPTSVERWFHGDAAWVNMPSLLKPR------- 353 (480)
T ss_pred CCeEEEEECCCCEEEECCCC----CchhhcceEEEECCEEEEECCcC-CCCceEEEECCCCeEEECCCCCCCC-------
Confidence 45789999999999999744 22222345688999999998753 2346889999999998874 23222
Q ss_pred cCCCcceEEEeCCeEEEEecC-CCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCe
Q 036281 265 SVKTPWMLGTYDDCLSLLYSD-KFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHE 343 (371)
Q Consensus 265 ~~~~~~~L~~~~g~L~l~~~~-~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~ 343 (371)
.....+.++|+|+++.-. .....++.+-.+...|+..-.+. .+ ......+.-+|+|++..+ ..-.||+++++
T Consensus 354 ---~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~-r~~~~~~~~~~~IYv~GG--~~e~ydp~~~~ 426 (480)
T PHA02790 354 ---CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YP-HYKSCALVFGRRLFLVGR--NAEFYCESSNT 426 (480)
T ss_pred ---cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cc-cccceEEEECCEEEEECC--ceEEecCCCCc
Confidence 245677899999997631 22355666655558898754332 12 112222334788888753 46789999999
Q ss_pred EEEEEE
Q 036281 344 MRDLGI 349 (371)
Q Consensus 344 ~~~v~~ 349 (371)
|+.+.-
T Consensus 427 W~~~~~ 432 (480)
T PHA02790 427 WTLIDD 432 (480)
T ss_pred EeEcCC
Confidence 998743
No 21
>PLN02153 epithiospecifier protein
Probab=98.18 E-value=0.00035 Score=65.15 Aligned_cols=158 Identities=9% Similarity=0.086 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCceeecCccccccceec-cccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeCCC-CCCCCCcc
Q 036281 187 SHVAVYNFSTNSWRDLKGFEMRFDYMV-DRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIKGP-SVPQTTTY 262 (371)
Q Consensus 187 ~~~~vy~~~~~~Wr~~~~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~~P-~~~~~~~~ 262 (371)
..+++|+..++.|+..+... ..|... .....+.++|.+|-+..... ....+.+||+.+.+|+.+... .....
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p--- 125 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANG-DVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGP--- 125 (341)
T ss_pred CcEEEEECCCCEEEEcCccC-CCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCC---
Confidence 47899999999999876331 122211 12356888999999875432 124688999999999987521 11000
Q ss_pred cccCCCcceEEEeCCeEEEEecCCCC-------CEEEEEEeeC--CceeEEEEec--CCCcceeeeEEeeCCEEEEEEc-
Q 036281 263 YQSVKTPWMLGTYDDCLSLLYSDKFA-------HSFELWIMKG--GFWIKHLTFG--PFIETYQPLGFWRKDEFLLESS- 330 (371)
Q Consensus 263 ~~~~~~~~~L~~~~g~L~l~~~~~~~-------~~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~- 330 (371)
........+..+++|+++.-.... ..-++|+.+- ..|...-... +.........+. +++|++...
T Consensus 126 --~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~ 202 (341)
T PLN02153 126 --EARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGF 202 (341)
T ss_pred --CCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEecc
Confidence 011234466789999886521110 1124555554 7898754332 111112223333 567766421
Q ss_pred -------------CCeEEEEeCCCCeEEEEEEec
Q 036281 331 -------------DKRVILYDSRYHEMRDLGITG 351 (371)
Q Consensus 331 -------------~~~l~~yd~~~~~~~~v~~~~ 351 (371)
...+..||+++++|+++...|
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 246899999999999986543
No 22
>PLN02193 nitrile-specifier protein
Probab=98.10 E-value=0.00036 Score=67.96 Aligned_cols=156 Identities=12% Similarity=0.087 Sum_probs=93.0
Q ss_pred ceEEEEEcCCCceeecCcccccccee-ccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeCCCCCCCCCccc
Q 036281 187 SHVAVYNFSTNSWRDLKGFEMRFDYM-VDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIKGPSVPQTTTYY 263 (371)
Q Consensus 187 ~~~~vy~~~~~~Wr~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~ 263 (371)
..+++|+..+++|..++... ..|.. ......+.+++.+|-+..... ....+-+||+.+.+|+.+..... ..
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g-~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~-~P---- 266 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATG-DVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEE-GP---- 266 (470)
T ss_pred CcEEEEECCCCEEEeCCCCC-CCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCC-CC----
Confidence 46899999999999875321 12221 113356788999998875431 23468899999999998743210 00
Q ss_pred ccCCCcceEEEeCCeEEEEecCC-CCCEEEEEEee--CCceeEEEEec--CCCcceeeeEEeeCCEEEEEEc-----CCe
Q 036281 264 QSVKTPWMLGTYDDCLSLLYSDK-FAHSFELWIMK--GGFWIKHLTFG--PFIETYQPLGFWRKDEFLLESS-----DKR 333 (371)
Q Consensus 264 ~~~~~~~~L~~~~g~L~l~~~~~-~~~~~~iW~L~--~~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~-----~~~ 333 (371)
.......++..+++|+++.-.. ....-++|..+ ...|+..-... +.........+. +++|++... ...
T Consensus 267 -~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~d 344 (470)
T PLN02193 267 -TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDD 344 (470)
T ss_pred -CCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCc
Confidence 0112344566899999875211 11122445544 37898654321 111112223333 567766532 256
Q ss_pred EEEEeCCCCeEEEEEEe
Q 036281 334 VILYDSRYHEMRDLGIT 350 (371)
Q Consensus 334 l~~yd~~~~~~~~v~~~ 350 (371)
+..||+++++|+.+...
T Consensus 345 v~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 345 VHYYDPVQDKWTQVETF 361 (470)
T ss_pred eEEEECCCCEEEEeccC
Confidence 99999999999998654
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.94 E-value=0.0021 Score=59.39 Aligned_cols=136 Identities=13% Similarity=0.023 Sum_probs=76.8
Q ss_pred CceEEEecccccc----ccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCc
Q 036281 123 TLINLWNVSLNEY----RGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNS 198 (371)
Q Consensus 123 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~ 198 (371)
.+ +.+|+.+++| ..+|+.+.... .. .+..++ -+|+.+..... ......+++|+..++.
T Consensus 89 ~v-~~~d~~~~~w~~~~~~~~~lp~~~~-----~~--~~~~~~-----~~iYv~GG~~~-----~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 89 SV-YRITLDESKEELICETIGNLPFTFE-----NG--SACYKD-----GTLYVGGGNRN-----GKPSNKSYLFNLETQE 150 (323)
T ss_pred eE-EEEEEcCCceeeeeeEcCCCCcCcc-----Cc--eEEEEC-----CEEEEEeCcCC-----CccCceEEEEcCCCCC
Confidence 45 8899999887 66776654211 11 111111 24555543211 1124578999999999
Q ss_pred eeecCccccccceeccccceEEECceEEEEEecCC-CCcEEEEEECCCceEEEeCCCCC-CCCCcccccCCCcceEEEeC
Q 036281 199 WRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD-YSKAILAFSMSNEVFQEIKGPSV-PQTTTYYQSVKTPWMLGTYD 276 (371)
Q Consensus 199 Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~Il~fD~~~e~~~~i~~P~~-~~~~~~~~~~~~~~~L~~~~ 276 (371)
|..++..+. .+. .....+.++|.+|-+..... ....+.+||+++++|+.+..... ... . .......++..+
T Consensus 151 W~~~~~~p~-~~r--~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p---~-~~~~~~~~~~~~ 223 (323)
T TIGR03548 151 WFELPDFPG-EPR--VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEP---I-SLLGAASIKINE 223 (323)
T ss_pred eeECCCCCC-CCC--CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCc---e-eccceeEEEECC
Confidence 999874311 111 12344688999999875431 12346899999999998753211 111 0 000122344457
Q ss_pred CeEEEEe
Q 036281 277 DCLSLLY 283 (371)
Q Consensus 277 g~L~l~~ 283 (371)
|+|.++.
T Consensus 224 ~~iyv~G 230 (323)
T TIGR03548 224 SLLLCIG 230 (323)
T ss_pred CEEEEEC
Confidence 8888865
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.92 E-value=0.00029 Score=64.44 Aligned_cols=212 Identities=11% Similarity=0.132 Sum_probs=120.2
Q ss_pred CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCC-CCCCCcceEEEEEcCCCcee
Q 036281 122 HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQR-DSFHDFSHVAVYNFSTNSWR 200 (371)
Q Consensus 122 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~-~~~~~~~~~~vy~~~~~~Wr 200 (371)
+.+ |++|--+.+|+.+-.+....++ +.......++. +-.+ ++.....+. +.......+.+|+..++.|.
T Consensus 98 ndL-y~Yn~k~~eWkk~~spn~P~pR------sshq~va~~s~--~l~~-fGGEfaSPnq~qF~HYkD~W~fd~~trkwe 167 (521)
T KOG1230|consen 98 NDL-YSYNTKKNEWKKVVSPNAPPPR------SSHQAVAVPSN--ILWL-FGGEFASPNQEQFHHYKDLWLFDLKTRKWE 167 (521)
T ss_pred eee-eEEeccccceeEeccCCCcCCC------ccceeEEeccC--eEEE-eccccCCcchhhhhhhhheeeeeeccchhe
Confidence 345 8999999999976433322221 11222223332 2111 111111110 11223456899999999999
Q ss_pred ecCccccccceeccccceEEECce------EEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEE
Q 036281 201 DLKGFEMRFDYMVDRIYNVYLNGY------CYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGT 274 (371)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~v~~~G~------lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~ 274 (371)
.+.....+-|.. ..+.|...-. +|=.........-|-+||+++=+|+.+..+.. .. .++..+++.+
T Consensus 168 ql~~~g~PS~RS--GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-~P-----tpRSGcq~~v 239 (521)
T KOG1230|consen 168 QLEFGGGPSPRS--GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-GP-----TPRSGCQFSV 239 (521)
T ss_pred eeccCCCCCCCc--cceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-CC-----CCCCcceEEe
Confidence 986432222221 1223332222 22211111123458999999999999976432 22 2234566666
Q ss_pred e-CCeEEEEe----------cCCCCCEEEEEEeeC-------CceeEEEEec--CCCcceeeeEEeeCCE-EEEEE--c-
Q 036281 275 Y-DDCLSLLY----------SDKFAHSFELWIMKG-------GFWIKHLTFG--PFIETYQPLGFWRKDE-FLLES--S- 330 (371)
Q Consensus 275 ~-~g~L~l~~----------~~~~~~~~~iW~L~~-------~~W~~~~~i~--~~~~~~~~~~~~~~~~-il~~~--~- 330 (371)
. +|.+.++. .+.....-++|.|+- -.|.++-.+. |.+.....++++++++ ++|-. .
T Consensus 240 tpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~ 319 (521)
T KOG1230|consen 240 TPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDL 319 (521)
T ss_pred cCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecc
Confidence 5 88888854 134556789999986 4688876655 4554555677777655 44421 0
Q ss_pred -----------CCeEEEEeCCCCeEEEEEEec
Q 036281 331 -----------DKRVILYDSRYHEMRDLGITG 351 (371)
Q Consensus 331 -----------~~~l~~yd~~~~~~~~v~~~~ 351 (371)
.+.|+.||+..++|.+.++++
T Consensus 320 eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 320 EEEEESLSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred cccchhhhhhhhhhhhheecccchhhHhhhcc
Confidence 246999999999998887765
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.82 E-value=0.0026 Score=60.14 Aligned_cols=150 Identities=18% Similarity=0.183 Sum_probs=88.6
Q ss_pred ceEEEEEcCCCceeecCccccccce-eccccceEEECceEEEEEecCC-----CCcEEEEEECCCceEEEeC-CCCCCCC
Q 036281 187 SHVAVYNFSTNSWRDLKGFEMRFDY-MVDRIYNVYLNGYCYWVVCRPD-----YSKAILAFSMSNEVFQEIK-GPSVPQT 259 (371)
Q Consensus 187 ~~~~vy~~~~~~Wr~~~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~-----~~~~Il~fD~~~e~~~~i~-~P~~~~~ 259 (371)
..+++|+..++.|+.++.. |. .......+.++|.+|.+..... .......||.++.+|..+. +|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~----p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGES----PFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCcC----CCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 5689999999999998643 32 1113355778999999885321 2234556788899998874 4543221
Q ss_pred CcccccCCC--cceEEEeCCeEEEEecCCCC--------------------CEEEEEEeeCCceeEEEEecCCCcceeee
Q 036281 260 TTYYQSVKT--PWMLGTYDDCLSLLYSDKFA--------------------HSFELWIMKGGFWIKHLTFGPFIETYQPL 317 (371)
Q Consensus 260 ~~~~~~~~~--~~~L~~~~g~L~l~~~~~~~--------------------~~~~iW~L~~~~W~~~~~i~~~~~~~~~~ 317 (371)
. .... ....+..+|+|.++.-.... ...+++-.+...|++.-.+ |.+.... .
T Consensus 265 ~----~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~r~~~-~ 338 (376)
T PRK14131 265 S----SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL-PQGLAYG-V 338 (376)
T ss_pred C----cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC-CCCccce-E
Confidence 0 0001 11245689999886521110 1345566655789876543 3332222 2
Q ss_pred EEeeCCEEEEEEcC-------CeEEEEeCCCCeEEE
Q 036281 318 GFWRKDEFLLESSD-------KRVILYDSRYHEMRD 346 (371)
Q Consensus 318 ~~~~~~~il~~~~~-------~~l~~yd~~~~~~~~ 346 (371)
++.-+++|++.... ..+..|+++++++..
T Consensus 339 av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 339 SVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 33346788877431 368888888877654
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=5.4e-05 Score=66.68 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=38.1
Q ss_pred cCCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHH
Q 036281 9 TLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFI 50 (371)
Q Consensus 9 ~~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~ 50 (371)
.+..|||||+..||+.||.|+|+++..|||+|+++-++.+-.
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 368999999999999999999999999999999998876543
No 27
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.23 E-value=0.021 Score=53.27 Aligned_cols=85 Identities=7% Similarity=0.053 Sum_probs=55.4
Q ss_pred ceEEEEEc--CCCceeecCccccccce-eccccceEEECceEEEEEecCC--------CCcEEEEEECCCceEEEeCCCC
Q 036281 187 SHVAVYNF--STNSWRDLKGFEMRFDY-MVDRIYNVYLNGYCYWVVCRPD--------YSKAILAFSMSNEVFQEIKGPS 255 (371)
Q Consensus 187 ~~~~vy~~--~~~~Wr~~~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~--------~~~~Il~fD~~~e~~~~i~~P~ 255 (371)
..+.+|++ .++.|+.++.. |. .......+.++|.+|-+..... ....+-+||+.+.+|+.+..|.
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~----p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~ 104 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADF----PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS 104 (346)
T ss_pred CeeEEEECCCCCCCceECCCC----CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCC
Confidence 45778886 45889998743 31 1113467899999999986431 0245889999999999986332
Q ss_pred CCCCCcccccCCCcc-eEEEeCCeEEEEe
Q 036281 256 VPQTTTYYQSVKTPW-MLGTYDDCLSLLY 283 (371)
Q Consensus 256 ~~~~~~~~~~~~~~~-~L~~~~g~L~l~~ 283 (371)
+... ... .+...+|+|+++.
T Consensus 105 p~~~--------~~~~~~~~~~g~IYviG 125 (346)
T TIGR03547 105 PVGL--------LGASGFSLHNGQAYFTG 125 (346)
T ss_pred CCcc--------cceeEEEEeCCEEEEEc
Confidence 2211 112 2336899999975
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.78 E-value=0.18 Score=49.28 Aligned_cols=157 Identities=10% Similarity=0.025 Sum_probs=101.1
Q ss_pred eEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeCCCCCCCCCcccc
Q 036281 188 HVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIKGPSVPQTTTYYQ 264 (371)
Q Consensus 188 ~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~ 264 (371)
.+.+++..+..|....... ..|........+.++..+|.+..... ....|-+||+.+.+|..+..-.. ..
T Consensus 89 dl~~~d~~~~~w~~~~~~g-~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~-~P----- 161 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATG-DEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD-PP----- 161 (482)
T ss_pred eeEEeecCCcccccccccC-CCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC-CC-----
Confidence 5888888888998775432 22322224566788888888876541 23579999999999998754221 11
Q ss_pred cCCCcceEEEeCCeEEEEec-C-CCCCEEEEEEeeC--CceeEEEEecCC--CcceeeeEEeeCCEEEEEEcC------C
Q 036281 265 SVKTPWMLGTYDDCLSLLYS-D-KFAHSFELWIMKG--GFWIKHLTFGPF--IETYQPLGFWRKDEFLLESSD------K 332 (371)
Q Consensus 265 ~~~~~~~L~~~~g~L~l~~~-~-~~~~~~~iW~L~~--~~W~~~~~i~~~--~~~~~~~~~~~~~~il~~~~~------~ 332 (371)
.++....++..+.+|.++.- . .....-++|+++- ..|.+....++. +...+...+.++.-+++.... .
T Consensus 162 ~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~ 241 (482)
T KOG0379|consen 162 PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLN 241 (482)
T ss_pred CCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceec
Confidence 11234456667788888652 1 2225778899886 779999887743 334445555544333333222 3
Q ss_pred eEEEEeCCCCeEEEEEEec
Q 036281 333 RVILYDSRYHEMRDLGITG 351 (371)
Q Consensus 333 ~l~~yd~~~~~~~~v~~~~ 351 (371)
-++.+|+.+.+|+.+...|
T Consensus 242 D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 242 DVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred ceEeeecccceeeeccccC
Confidence 4899999998888665554
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.44 E-value=0.18 Score=44.10 Aligned_cols=134 Identities=14% Similarity=0.192 Sum_probs=81.7
Q ss_pred cceEEEEEcCCCceeecCccccccceecc-ccceEEECceEEEEEecCC-----------CCcEEEEEECCCceEEEeC-
Q 036281 186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVD-RIYNVYLNGYCYWVVCRPD-----------YSKAILAFSMSNEVFQEIK- 252 (371)
Q Consensus 186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~-----------~~~~Il~fD~~~e~~~~i~- 252 (371)
...+++++..|-.||.+... ..|..+. ...++.++|.+|-+..++. ....|++||+.++.|..-+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~ 233 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE 233 (392)
T ss_pred hccceeEeccceeeeehhcc--CCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence 45677888889999998754 2222222 4577888899999886542 2467999999999998652
Q ss_pred CCCCCCCCcccccCCCcceEEEeCCeEEEEecC---CCCCEEEEEEeeC--CceeEEEEecCCCc-ceeeeEEeeCCEEE
Q 036281 253 GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD---KFAHSFELWIMKG--GFWIKHLTFGPFIE-TYQPLGFWRKDEFL 326 (371)
Q Consensus 253 ~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~---~~~~~~~iW~L~~--~~W~~~~~i~~~~~-~~~~~~~~~~~~il 326 (371)
.|..... ++.-...+++|+++++.-. .+..-=++|..+- ..|++...-+.-+. -.+-.++.-+++++
T Consensus 234 ~~~~P~G-------RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~ 306 (392)
T KOG4693|consen 234 NTMKPGG-------RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVY 306 (392)
T ss_pred CCcCCCc-------ccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEE
Confidence 1111111 1344567899999996521 1223347888887 77877543332121 12223333456655
Q ss_pred EE
Q 036281 327 LE 328 (371)
Q Consensus 327 ~~ 328 (371)
+-
T Consensus 307 LF 308 (392)
T KOG4693|consen 307 LF 308 (392)
T ss_pred Ee
Confidence 53
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.24 E-value=0.036 Score=48.26 Aligned_cols=157 Identities=10% Similarity=0.082 Sum_probs=91.6
Q ss_pred cceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC----CCcEEEEEECCCceEEEeCC---CCCCC
Q 036281 186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD----YSKAILAFSMSNEVFQEIKG---PSVPQ 258 (371)
Q Consensus 186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~Il~fD~~~e~~~~i~~---P~~~~ 258 (371)
--.+.-|+.+++.|+..+ +..-+|......++++.+..+|-+..... -..-+-+||+.+.+|+.+.. |+...
T Consensus 104 CN~Ly~fDp~t~~W~~p~-v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPE-VEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred cceeeeeccccccccccc-eeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 346788999999999875 21123333334567778888887764321 12358899999999999864 44322
Q ss_pred CCcccccCCCcceEEEeCCeEEEEecCC----------CCCEEEEEEeeC--CceeEEEEecCCCcceee-eEEeeCCEE
Q 036281 259 TTTYYQSVKTPWMLGTYDDCLSLLYSDK----------FAHSFELWIMKG--GFWIKHLTFGPFIETYQP-LGFWRKDEF 325 (371)
Q Consensus 259 ~~~~~~~~~~~~~L~~~~g~L~l~~~~~----------~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~-~~~~~~~~i 325 (371)
+ | -.-.+++|..+++.-.. +.-.=+|-.|+- +.|.+...-...+.-.+. -.+.-+|++
T Consensus 183 D----F-----H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~ 253 (392)
T KOG4693|consen 183 D----F-----HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKM 253 (392)
T ss_pred h----h-----hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceE
Confidence 2 1 12233456666544111 111123444443 778776332222211111 122237777
Q ss_pred EEEEc--------CCeEEEEeCCCCeEEEEEEecc
Q 036281 326 LLESS--------DKRVILYDSRYHEMRDLGITGL 352 (371)
Q Consensus 326 l~~~~--------~~~l~~yd~~~~~~~~v~~~~~ 352 (371)
++-.. .+.|+.||++|+.|..|..+|.
T Consensus 254 Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 254 YMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred EEecccchhhhhhhcceeecccccchheeeeccCC
Confidence 66532 3569999999999999999875
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.24 E-value=0.33 Score=47.49 Aligned_cols=205 Identities=13% Similarity=0.042 Sum_probs=117.8
Q ss_pred ceEEEeccccccccCCCCCCCC-CCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeec
Q 036281 124 LINLWNVSLNEYRGLPECRPRL-PCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDL 202 (371)
Q Consensus 124 ~~~V~NP~T~~~~~LP~~~~~~-~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~ 202 (371)
+ +|+|--++.|.......... +++ ......++ =+++.++.... .......+.+|+..|+.|+..
T Consensus 90 l-~~~d~~~~~w~~~~~~g~~p~~r~---g~~~~~~~-------~~l~lfGG~~~----~~~~~~~l~~~d~~t~~W~~l 154 (482)
T KOG0379|consen 90 L-YVLDLESQLWTKPAATGDEPSPRY---GHSLSAVG-------DKLYLFGGTDK----KYRNLNELHSLDLSTRTWSLL 154 (482)
T ss_pred e-EEeecCCcccccccccCCCCCccc---ceeEEEEC-------CeEEEEccccC----CCCChhheEeccCCCCcEEEe
Confidence 6 99999998888765443321 111 11111111 23333322111 011256889999999999998
Q ss_pred CccccccceeccccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeE
Q 036281 203 KGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCL 279 (371)
Q Consensus 203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L 279 (371)
..... .|........+.++-++|.+..... ....+-+||+.+.+|.++......-. ++....++..++++
T Consensus 155 ~~~~~-~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~------pR~gH~~~~~~~~~ 227 (482)
T KOG0379|consen 155 SPTGD-PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS------PRYGHAMVVVGNKL 227 (482)
T ss_pred cCcCC-CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC------CCCCceEEEECCeE
Confidence 75422 1221113455566666666654332 24679999999999999876432211 11344577788999
Q ss_pred EEEec-C-CCCCEEEEEEeeC--CceeEEEEec--CCCcceeeeEEeeCCEEEEEE--------cCCeEEEEeCCCCeEE
Q 036281 280 SLLYS-D-KFAHSFELWIMKG--GFWIKHLTFG--PFIETYQPLGFWRKDEFLLES--------SDKRVILYDSRYHEMR 345 (371)
Q Consensus 280 ~l~~~-~-~~~~~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~--------~~~~l~~yd~~~~~~~ 345 (371)
+++.- . .+...=++|.|+= ..|.+.-... |.+.......+. +..+++.. .-..++.||.+++.|.
T Consensus 228 ~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~ 306 (482)
T KOG0379|consen 228 LVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWS 306 (482)
T ss_pred EEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCccccccccccccccccccccee
Confidence 88652 1 2334457888887 6677544332 334445554443 33444432 1235889999999998
Q ss_pred EEEEec
Q 036281 346 DLGITG 351 (371)
Q Consensus 346 ~v~~~~ 351 (371)
++...+
T Consensus 307 ~~~~~~ 312 (482)
T KOG0379|consen 307 KVESVG 312 (482)
T ss_pred eeeccc
Confidence 886655
No 32
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.79 E-value=0.0029 Score=56.18 Aligned_cols=45 Identities=18% Similarity=0.407 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHhcCC-----ccccceeeecccchhhhcCChHHHHHHh
Q 036281 10 LGDLSDDMMIETLSRLP-----VKSLMRFKCVCISWCDLVKDPNFIYKHL 54 (371)
Q Consensus 10 ~~~LP~dll~~IL~rLP-----~ksl~r~r~VcK~W~~li~~p~F~~~~~ 54 (371)
+..||||++.+||.+.= ..+|.++.+|||.|+-...+|+|.+..+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 46899999999998754 5899999999999999999999887643
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.39 E-value=0.67 Score=43.15 Aligned_cols=155 Identities=11% Similarity=0.101 Sum_probs=91.5
Q ss_pred ceEEEEEcCCCceeecCccccccceeccccceEEEC-ceEEEEEecCC--------CCcEEEEEECCCceEEEeCCCCCC
Q 036281 187 SHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLN-GYCYWVVCRPD--------YSKAILAFSMSNEVFQEIKGPSVP 257 (371)
Q Consensus 187 ~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~--------~~~~Il~fD~~~e~~~~i~~P~~~ 257 (371)
-.+..|+.+++.|+.+....++.|.. ...+|.+- |.+|.+..... ...-+-.||+.+.+|..+.++...
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRs--shq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRS--SHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCc--cceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 35688999999999987653344443 33445554 65554443221 234588999999999999987654
Q ss_pred CCCcccccCCCcceEEEeCCeEEEEec--CCCCC---EEEEEEeeC--CceeEEEEec--CCCcceeeeEEeeCCEEEEE
Q 036281 258 QTTTYYQSVKTPWMLGTYDDCLSLLYS--DKFAH---SFELWIMKG--GFWIKHLTFG--PFIETYQPLGFWRKDEFLLE 328 (371)
Q Consensus 258 ~~~~~~~~~~~~~~L~~~~g~L~l~~~--~~~~~---~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~ 328 (371)
.. +...+++..+.+|.++.- +.... -=+||+.+= ..|++.-.=. |.+.-..-+.+.+.|.|++.
T Consensus 176 S~-------RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 176 SP-------RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred CC-------CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence 33 245678888999998541 11111 124555553 7899876522 33211222344556666664
Q ss_pred Ec----------C-----CeEEEEeCCCC---eEEEEEEe
Q 036281 329 SS----------D-----KRVILYDSRYH---EMRDLGIT 350 (371)
Q Consensus 329 ~~----------~-----~~l~~yd~~~~---~~~~v~~~ 350 (371)
.. + ..++..+++++ +|+|-.++
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk 288 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK 288 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence 21 0 23777888773 35555554
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.23 E-value=0.0056 Score=54.91 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=40.5
Q ss_pred CCCCC----HHHHHHHHhcCCccccceeeecccchhhhcCChHHHHHHhc
Q 036281 10 LGDLS----DDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLK 55 (371)
Q Consensus 10 ~~~LP----~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~~~ 55 (371)
+..|| +++.+.||+.|...+|..+..|||+|+.+++++-..++-..
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 35799 99999999999999999999999999999999876665433
No 35
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.75 E-value=3.3 Score=36.69 Aligned_cols=134 Identities=15% Similarity=0.178 Sum_probs=78.5
Q ss_pred cceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEE-EeCCCCCCCC--CcccccCCCcceEEEeCCeEEEEec-
Q 036281 209 FDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQ-EIKGPSVPQT--TTYYQSVKTPWMLGTYDDCLSLLYS- 284 (371)
Q Consensus 209 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~-~i~~P~~~~~--~~~~~~~~~~~~L~~~~g~L~l~~~- 284 (371)
+|..+..+.-|..||.+|+.... ...|+.||+.+++.. ...+|..... ....+.......+++=+.-|.++..
T Consensus 65 Lp~~~~GtG~vVYngslYY~~~~---s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat 141 (250)
T PF02191_consen 65 LPYPWQGTGHVVYNGSLYYNKYN---SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYAT 141 (250)
T ss_pred EeceeccCCeEEECCcEEEEecC---CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEec
Confidence 44444355668899999998864 368999999999998 7788875432 0001112245667776777777442
Q ss_pred CCCCCEEEEEEeeC------CceeEEEEecCCCcceeeeEEeeCCEEEEEEc-----CCeEEEEeCCCCeEEEEEEe
Q 036281 285 DKFAHSFELWIMKG------GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS-----DKRVILYDSRYHEMRDLGIT 350 (371)
Q Consensus 285 ~~~~~~~~iW~L~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-----~~~l~~yd~~~~~~~~v~~~ 350 (371)
......+-|=.|+. +.|.-.+ +.......+- -.|.|+.... ..-.+.||..+++-+.+.+.
T Consensus 142 ~~~~g~ivvskld~~tL~v~~tw~T~~---~k~~~~naFm--vCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 142 EDNNGNIVVSKLDPETLSVEQTWNTSY---PKRSAGNAFM--VCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred CCCCCcEEEEeeCcccCceEEEEEecc---Cchhhcceee--EeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 22333466666664 3444221 1221222221 1355655532 23467899988887777664
No 36
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.61 E-value=5.2 Score=38.23 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=80.9
Q ss_pred ceEEEEEcCCC-----ceeecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCce---EEEeCCCCCCC
Q 036281 187 SHVAVYNFSTN-----SWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEV---FQEIKGPSVPQ 258 (371)
Q Consensus 187 ~~~~vy~~~~~-----~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~---~~~i~~P~~~~ 258 (371)
..+.+.+...+ .|+.+... .+.. ....-..+|.+|.++........|++.|+.+-. |..+-.|....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~---~~~~--~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPR---EDGV--EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEES---SSS---EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred CeEEEEeccccCCCcCCcEEEeCC---CCce--EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc
Confidence 45556666553 56666321 1110 112335578899888765567899999998765 55433333221
Q ss_pred CCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceeeeEE-eeCCEEEEEEc----CCe
Q 036281 259 TTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGF-WRKDEFLLESS----DKR 333 (371)
Q Consensus 259 ~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~-~~~~~il~~~~----~~~ 333 (371)
. .-..+...++.|.+.........|.++-+. ..|.....-.|..+....+.. ...+++.+... ...
T Consensus 327 ~--------~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~ 397 (414)
T PF02897_consen 327 V--------SLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPT 397 (414)
T ss_dssp E--------EEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEE
T ss_pred e--------eEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCE
Confidence 1 123345578999997654566666776665 145444332232221111211 22556766642 467
Q ss_pred EEEEeCCCCeEEEEE
Q 036281 334 VILYDSRYHEMRDLG 348 (371)
Q Consensus 334 l~~yd~~~~~~~~v~ 348 (371)
++.||+++++.+.+.
T Consensus 398 ~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 398 VYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEETTTTCEEEEE
T ss_pred EEEEECCCCCEEEEE
Confidence 999999999988774
No 37
>smart00284 OLF Olfactomedin-like domains.
Probab=93.13 E-value=5.2 Score=35.36 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=77.1
Q ss_pred cceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEEEe-CCCCCCCC-C-cccccCCCcceEEEeCCeEEEEe-c
Q 036281 209 FDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEI-KGPSVPQT-T-TYYQSVKTPWMLGTYDDCLSLLY-S 284 (371)
Q Consensus 209 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i-~~P~~~~~-~-~~~~~~~~~~~L~~~~g~L~l~~-~ 284 (371)
+|..+....-|+.||.+|+.... ...|+.||+.+++.... .+|...-. + ...+.....+.|++=+.-|.++. .
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~~---s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat 146 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKFN---SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYAT 146 (255)
T ss_pred CCCccccccEEEECceEEEEecC---CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEec
Confidence 34433355679999999996654 35799999999998643 46753211 0 00011124567777777777743 3
Q ss_pred CCCCCEEEEEEeeC------CceeEEEEecCCCcceeeeEEeeCCEEEEEE-----cCCeEEEEeCCCCeEEEEEEe
Q 036281 285 DKFAHSFELWIMKG------GFWIKHLTFGPFIETYQPLGFWRKDEFLLES-----SDKRVILYDSRYHEMRDLGIT 350 (371)
Q Consensus 285 ~~~~~~~~iW~L~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-----~~~~l~~yd~~~~~~~~v~~~ 350 (371)
......|-|=.|+. +.|.-.+ +.......+-+ .|.++... ...-.+.||..|++-+.+.+.
T Consensus 147 ~~~~g~ivvSkLnp~tL~ve~tW~T~~---~k~sa~naFmv--CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 147 EQNAGKIVISKLNPATLTIENTWITTY---NKRSASNAFMI--CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred cCCCCCEEEEeeCcccceEEEEEEcCC---CcccccccEEE--eeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 34456677777766 3444321 22212222211 35565553 123477899988887766554
No 38
>PF13964 Kelch_6: Kelch motif
Probab=92.82 E-value=0.33 Score=30.92 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=30.4
Q ss_pred cceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeC
Q 036281 216 IYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK 252 (371)
Q Consensus 216 ~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~ 252 (371)
...|.++|.+|.+..... ....+..||+++.+|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 366899999999986642 3468999999999999984
No 39
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.50 E-value=1.7 Score=38.48 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=75.6
Q ss_pred EEEeeecceEEEee-cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCC
Q 036281 107 IHIGPYDGIFCLLK-SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHD 185 (371)
Q Consensus 107 ~~~~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 185 (371)
-+.+.-+|-|-+.. ..+++.-.||.++.-..+|.+..... ..-.+..|+... +++.. -.
T Consensus 193 Gi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~-------gsRriwsdpig~----~witt---------wg 252 (353)
T COG4257 193 GICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKA-------GSRRIWSDPIGR----AWITT---------WG 252 (353)
T ss_pred ceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccc-------cccccccCccCc----EEEec---------cC
Confidence 45555566666554 23444889999997778887764211 112334444321 22221 11
Q ss_pred cceEEEEEcCCCceeecCccccccceeccccceEEEC--ceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCC
Q 036281 186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLN--GYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVP 257 (371)
Q Consensus 186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~--G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~ 257 (371)
.-.+..|+..+.+|++-+. |...-+...++++ |. -|+..-+ ...|..||.++++|+++++|...
T Consensus 253 ~g~l~rfdPs~~sW~eypL-----Pgs~arpys~rVD~~gr-VW~sea~--agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPL-----PGSKARPYSMRVDRHGR-VWLSEAD--AGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred CceeeEeCcccccceeeeC-----CCCCCCcceeeeccCCc-EEeeccc--cCceeecCcccceEEEecCCCCC
Confidence 5678899999999998742 2221133445555 44 4665433 56899999999999999988764
No 40
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.21 E-value=7 Score=33.73 Aligned_cols=195 Identities=10% Similarity=-0.016 Sum_probs=93.1
Q ss_pred ecceEEEeecCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEE
Q 036281 112 YDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAV 191 (371)
Q Consensus 112 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 191 (371)
.+|.+........++.+|+.|++...--..+.. . .. . +...+-+|+... . .-.+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---~---~~--~-----~~~~~~~v~v~~---~--------~~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---I---SG--A-----PVVDGGRVYVGT---S--------DGSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC---G---GS--G-----EEEETTEEEEEE---T--------TSEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc---c---cc--e-----eeeccccccccc---c--------eeeeEe
Confidence 677777775443339999999886532222211 0 00 0 111122232222 0 125666
Q ss_pred EEcCCC--ceee-cCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCce--EEE-eCCCCCCCCCccccc
Q 036281 192 YNFSTN--SWRD-LKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEV--FQE-IKGPSVPQTTTYYQS 265 (371)
Q Consensus 192 y~~~~~--~Wr~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~--~~~-i~~P~~~~~~~~~~~ 265 (371)
++..++ .|+. .... +... ..........++.+|.....+ .|.++|+++.+ |.. +..|..... ... .
T Consensus 91 ~d~~tG~~~W~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g----~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~-~ 162 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSS-PPAG-VRSSSSPAVDGDRLYVGTSSG----KLVALDPKTGKLLWKYPVGEPRGSSP-ISS-F 162 (238)
T ss_dssp EETTTSCEEEEEEE-SS-CTCS-TB--SEEEEETTEEEEEETCS----EEEEEETTTTEEEEEEESSTT-SS---EEE-E
T ss_pred cccCCcceeeeeccccc-cccc-cccccCceEecCEEEEEeccC----cEEEEecCCCcEEEEeecCCCCCCcc-eee-e
Confidence 775554 6984 4321 1112 111223344466777666544 89999998764 433 233332111 000 0
Q ss_pred CCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCC--ceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCe
Q 036281 266 VKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGG--FWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHE 343 (371)
Q Consensus 266 ~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~--~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~ 343 (371)
......++..+|.+++... ....+.+ -++.. .|.+. ..... ......++.+++...++.++.+|++|++
T Consensus 163 ~~~~~~~~~~~~~v~~~~~--~g~~~~~-d~~tg~~~w~~~-----~~~~~-~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSG--DGRVVAV-DLATGEKLWSKP-----ISGIY-SLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTEEEEEECCTTEEEEECC--TSSEEEE-ETTTTEEEEEEC-----SS-EC-ECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred cccccceEEECCEEEEEcC--CCeEEEE-ECCCCCEEEEec-----CCCcc-CCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 0012334444675555442 2223444 33332 24221 11111 1122346667777778999999999999
Q ss_pred EEEE
Q 036281 344 MRDL 347 (371)
Q Consensus 344 ~~~v 347 (371)
..|.
T Consensus 234 ~~W~ 237 (238)
T PF13360_consen 234 VVWQ 237 (238)
T ss_dssp EEEE
T ss_pred EEeE
Confidence 8774
No 41
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.68 E-value=4.1 Score=37.42 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=99.6
Q ss_pred ceEEEEEcCCCceeecCccccccceeccccceEEECc-eEEEEEecCC--------------------------------
Q 036281 187 SHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNG-YCYWVVCRPD-------------------------------- 233 (371)
Q Consensus 187 ~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~-------------------------------- 233 (371)
-.+..|+..+++|..++.. .|.......++.++| .+|.+.....
T Consensus 113 nd~Y~y~p~~nsW~kl~t~---sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~ 189 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTR---SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKA 189 (381)
T ss_pred eeeEEecCCCChhheeccc---cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCH
Confidence 4578899999999999754 333333345556665 6777654320
Q ss_pred ----CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEEec--CCCCCEEEEEEeeC----Ccee
Q 036281 234 ----YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYS--DKFAHSFELWIMKG----GFWI 302 (371)
Q Consensus 234 ----~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~--~~~~~~~~iW~L~~----~~W~ 302 (371)
....+++||..+++|+..- .|..... ....+..+++|.++.- ...-++-++|+.+- ..|.
T Consensus 190 ~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a---------Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~ 260 (381)
T COG3055 190 EDYFFNKEVLSYDPSTNQWRNLGENPFYGNA---------GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWL 260 (381)
T ss_pred HHhcccccccccccccchhhhcCcCcccCcc---------CcceeecCCeEEEEcceecCCccccceeEEEeccCceeee
Confidence 2456999999999999875 5654322 2334556777888652 23445555555542 7888
Q ss_pred EEEEecCCC-----cceeeeEEeeCCEEEEEE-------------------------cCCeEEEEeCCCCeEEEEEEe--
Q 036281 303 KHLTFGPFI-----ETYQPLGFWRKDEFLLES-------------------------SDKRVILYDSRYHEMRDLGIT-- 350 (371)
Q Consensus 303 ~~~~i~~~~-----~~~~~~~~~~~~~il~~~-------------------------~~~~l~~yd~~~~~~~~v~~~-- 350 (371)
+.-..++.. ++..-+.---++++++.. ....++.+| ++.|+.++--
T Consensus 261 ~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~ 338 (381)
T COG3055 261 KLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQ 338 (381)
T ss_pred eccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCC
Confidence 876654321 111111111245555541 124577777 8889888442
Q ss_pred cceeEE-EEeEeeeeecCCC
Q 036281 351 GLWFSV-HILKESLIRMKDE 369 (371)
Q Consensus 351 ~~~~~~-~~y~~Sl~~~~~~ 369 (371)
+..... ..|-+.++.|++|
T Consensus 339 ~l~YG~s~~~nn~vl~IGGE 358 (381)
T COG3055 339 GLAYGVSLSYNNKVLLIGGE 358 (381)
T ss_pred CccceEEEecCCcEEEEccc
Confidence 222333 7777788887766
No 42
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.93 E-value=8.8 Score=33.27 Aligned_cols=121 Identities=8% Similarity=0.141 Sum_probs=67.2
Q ss_pred EECceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEE--eCC--eEEEEec---CCCCCEEE
Q 036281 220 YLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGT--YDD--CLSLLYS---DKFAHSFE 292 (371)
Q Consensus 220 ~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~--~~g--~L~l~~~---~~~~~~~~ 292 (371)
.+||-+ ++... ..+...|+.|.++..++.|...... .......++- ..+ |+..+.. ......++
T Consensus 3 sCnGLl-c~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~----~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~ 73 (230)
T TIGR01640 3 PCDGLI-CFSYG----KRLVVWNPSTGQSRWLPTPKSRRSN----KESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQ 73 (230)
T ss_pred ccceEE-EEecC----CcEEEECCCCCCEEecCCCCCcccc----cccceEEEeecccCCcEEEEEEEeecCCCCCccEE
Confidence 468887 45433 3799999999999998765431110 0000011111 011 1111111 12346788
Q ss_pred EEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEc-C-----CeEEEEeCCCCeEEE-EEEe
Q 036281 293 LWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESS-D-----KRVILYDSRYHEMRD-LGIT 350 (371)
Q Consensus 293 iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~-----~~l~~yd~~~~~~~~-v~~~ 350 (371)
|+.+...+|.......+.....+. ++.-+|.+..... . ..++.||+++.++++ +..+
T Consensus 74 Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 74 VYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 999988889886532221111222 4445777755432 1 169999999999995 6554
No 43
>smart00612 Kelch Kelch domain.
Probab=88.22 E-value=0.88 Score=27.96 Aligned_cols=19 Identities=37% Similarity=0.677 Sum_probs=16.4
Q ss_pred cceEEEEEcCCCceeecCc
Q 036281 186 FSHVAVYNFSTNSWRDLKG 204 (371)
Q Consensus 186 ~~~~~vy~~~~~~Wr~~~~ 204 (371)
...+++|+.+++.|+..+.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~ 32 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPS 32 (47)
T ss_pred eeeEEEECCCCCeEccCCC
Confidence 5678999999999998874
No 44
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.08 E-value=17 Score=33.79 Aligned_cols=116 Identities=10% Similarity=0.157 Sum_probs=71.3
Q ss_pred CceEEEEEecCCCCcEEEEEECCCce--E---EEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEe
Q 036281 222 NGYCYWVVCRPDYSKAILAFSMSNEV--F---QEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIM 296 (371)
Q Consensus 222 ~G~lywl~~~~~~~~~Il~fD~~~e~--~---~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L 296 (371)
+|..-|.+..+ ...|..|++..+. + ..+.+|..... +.. ...-+|+..++.. .....+.++.+
T Consensus 154 dg~~v~v~dlG--~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP--------Rh~-~f~pdg~~~Yv~~-e~s~~v~v~~~ 221 (345)
T PF10282_consen 154 DGRFVYVPDLG--ADRVYVYDIDDDTGKLTPVDSIKVPPGSGP--------RHL-AFSPDGKYAYVVN-ELSNTVSVFDY 221 (345)
T ss_dssp TSSEEEEEETT--TTEEEEEEE-TTS-TEEEEEEEECSTTSSE--------EEE-EE-TTSSEEEEEE-TTTTEEEEEEE
T ss_pred CCCEEEEEecC--CCEEEEEEEeCCCceEEEeeccccccCCCC--------cEE-EEcCCcCEEEEec-CCCCcEEEEee
Confidence 46666666555 5688888887765 4 33456655433 111 2223566555443 56788999999
Q ss_pred eC--CceeEEEEecCCC-c-----ceeeeEEeeCCEEEEEE--cCCeEEEEeC--CCCeEEEEEE
Q 036281 297 KG--GFWIKHLTFGPFI-E-----TYQPLGFWRKDEFLLES--SDKRVILYDS--RYHEMRDLGI 349 (371)
Q Consensus 297 ~~--~~W~~~~~i~~~~-~-----~~~~~~~~~~~~il~~~--~~~~l~~yd~--~~~~~~~v~~ 349 (371)
.. ..++...++...+ . ...-+.+.+||+.+++. ..+.+..|++ ++++++.++.
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 84 6777777776432 1 23446677889877764 3567888987 5677877755
No 45
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.72 E-value=24 Score=32.87 Aligned_cols=151 Identities=14% Similarity=0.143 Sum_probs=78.9
Q ss_pred cceEEEEEcCCCc--eeecCccccccceeccccceE-EECce-EEEEEecCCCCcEEEEEECC--CceEEEeC----CCC
Q 036281 186 FSHVAVYNFSTNS--WRDLKGFEMRFDYMVDRIYNV-YLNGY-CYWVVCRPDYSKAILAFSMS--NEVFQEIK----GPS 255 (371)
Q Consensus 186 ~~~~~vy~~~~~~--Wr~~~~~~~~~~~~~~~~~~v-~~~G~-lywl~~~~~~~~~Il~fD~~--~e~~~~i~----~P~ 255 (371)
.-.+.+|+.+.+. ....... ..+........+ .-+|. +|..... ...|.+|++. +.+++.++ +|.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~--~~~~G~GPRh~~f~pdg~~~Yv~~e~---s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSI--KVPPGSGPRHLAFSPDGKYAYVVNEL---SNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEE--ECSTTSSEEEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred CCEEEEEEEeCCCceEEEeecc--ccccCCCCcEEEEcCCcCEEEEecCC---CCcEEEEeecccCCceeEEEEeeeccc
Confidence 4467788877654 5442211 111111111112 22554 5555433 3567777776 66665543 344
Q ss_pred CCCCCcccccCCCcceEEE-eCCeEEEEecCCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEE--c
Q 036281 256 VPQTTTYYQSVKTPWMLGT-YDDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLES--S 330 (371)
Q Consensus 256 ~~~~~~~~~~~~~~~~L~~-~~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~--~ 330 (371)
.... ......+.. -+|+..++.. ....+|.++.++. ..-+....+.......+-+.+.++|+.+++. .
T Consensus 240 ~~~~------~~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 240 GFTG------ENAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp TSCS------SSSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred cccc------cCCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 3222 002223433 4676555543 5689999999965 4444444443222234556777788866653 4
Q ss_pred CCeEEEE--eCCCCeEEEEE
Q 036281 331 DKRVILY--DSRYHEMRDLG 348 (371)
Q Consensus 331 ~~~l~~y--d~~~~~~~~v~ 348 (371)
++.+.+| |.++++++.+.
T Consensus 313 s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEec
Confidence 5667777 55788988875
No 46
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=86.75 E-value=1.7 Score=26.97 Aligned_cols=37 Identities=8% Similarity=0.130 Sum_probs=30.1
Q ss_pred cceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeC
Q 036281 216 IYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK 252 (371)
Q Consensus 216 ~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~ 252 (371)
...+.++|.+|-+..... ....+..||+.+.+|+.++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 367899999999986542 3578999999999999873
No 47
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=85.50 E-value=2.7 Score=26.50 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=30.1
Q ss_pred cceEEECceEEEEEec--CC---CCcEEEEEECCCceEEEeCC
Q 036281 216 IYNVYLNGYCYWVVCR--PD---YSKAILAFSMSNEVFQEIKG 253 (371)
Q Consensus 216 ~~~v~~~G~lywl~~~--~~---~~~~Il~fD~~~e~~~~i~~ 253 (371)
...+.++|++|.+... .. ....+-.||+++.+|+.++.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 3568899999998866 11 45679999999999998754
No 48
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=84.61 E-value=34 Score=31.83 Aligned_cols=128 Identities=15% Similarity=0.110 Sum_probs=68.7
Q ss_pred eEEEeecCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEc
Q 036281 115 IFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNF 194 (371)
Q Consensus 115 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~ 194 (371)
+|+....... +|+++.|+....+|....... .. +.+.. .+. +..+.........+......+|+++-
T Consensus 79 Iv~~d~~~~t-~vyDt~t~av~~~P~l~~pk~-----~p--isv~V---G~~--LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 79 IVAVDQSGRT-LVYDTDTRAVATGPRLHSPKR-----CP--ISVSV---GDK--LYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred EEEEcCCCCe-EEEECCCCeEeccCCCCCCCc-----ce--EEEEe---CCe--EEEeeccCccccccCccceeEEEecc
Confidence 3333334556 999999999999988654211 11 12111 122 44443221111000000115566522
Q ss_pred ----------CCCceeecCccccccceec------cccceEEECceEEEEEecCCCCcEEEEEECCCceEEEe---CCCC
Q 036281 195 ----------STNSWRDLKGFEMRFDYMV------DRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEI---KGPS 255 (371)
Q Consensus 195 ----------~~~~Wr~~~~~~~~~~~~~------~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i---~~P~ 255 (371)
++.+|+.++.. ++.... ....+|+ +|.--|+...+ ....--+||..+.+|+.. .+|.
T Consensus 146 ~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~~-~~~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVV-DGRTIFVSVNG-RRWGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred ccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEe-cCCeEEEEecC-CceEEEEEEcCCcceeeccceecCc
Confidence 22467777532 333222 2346666 89888886553 013689999999999987 5787
Q ss_pred CCCC
Q 036281 256 VPQT 259 (371)
Q Consensus 256 ~~~~ 259 (371)
....
T Consensus 222 ~G~a 225 (342)
T PF07893_consen 222 HGQA 225 (342)
T ss_pred CCcc
Confidence 5543
No 49
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=84.18 E-value=28 Score=32.42 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=36.6
Q ss_pred eEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCCC-CcEEEEEECCCc
Q 036281 188 HVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDY-SKAILAFSMSNE 246 (371)
Q Consensus 188 ~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~Il~fD~~~e 246 (371)
....|+..+..|+...+. .+|. ...+.++..-=-|+.-.... ...|-+.|+.+.
T Consensus 200 GTysfDt~~~~W~~~GdW--~LPF---~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~ 254 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDW--MLPF---HGQAEYVPELDLWFGLSSDGGGGHLCACDVSSA 254 (342)
T ss_pred EEEEEEcCCcceeeccce--ecCc---CCccEECCCcCeEEEeccCCCCcEEEEEecccc
Confidence 466777777899999866 4454 34666766655677655421 248999999874
No 50
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=82.87 E-value=11 Score=29.44 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=48.7
Q ss_pred EEEEEECCCc--eEEEeCCCCCCCCCcc----cccCCCcceEEEeCCeEEEEec--C------CCCCEEEEEEeeC----
Q 036281 237 AILAFSMSNE--VFQEIKGPSVPQTTTY----YQSVKTPWMLGTYDDCLSLLYS--D------KFAHSFELWIMKG---- 298 (371)
Q Consensus 237 ~Il~fD~~~e--~~~~i~~P~~~~~~~~----~~~~~~~~~L~~~~g~L~l~~~--~------~~~~~~~iW~L~~---- 298 (371)
+|+.+|+-.+ .++.|++|........ .......-.++..+|+|-++.. . .....+.+|+|..
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6889998765 6788888876532000 0011223356678999988652 1 3567899999997
Q ss_pred -CceeEEEEec
Q 036281 299 -GFWIKHLTFG 308 (371)
Q Consensus 299 -~~W~~~~~i~ 308 (371)
..|.+.+++.
T Consensus 87 ~~~W~~d~~v~ 97 (131)
T PF07762_consen 87 SWEWKKDCEVD 97 (131)
T ss_pred CCCEEEeEEEE
Confidence 6799999886
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=80.90 E-value=45 Score=31.57 Aligned_cols=117 Identities=6% Similarity=-0.046 Sum_probs=64.0
Q ss_pred cceEEECceEEEEEecCCCCcEEEEEECCCc--eEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEE
Q 036281 216 IYNVYLNGYCYWVVCRPDYSKAILAFSMSNE--VFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFEL 293 (371)
Q Consensus 216 ~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e--~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i 293 (371)
..++..+|.+|.....+ .|.+||.++. .|+. +++..................+..+|++++.. .... +
T Consensus 63 ~sPvv~~~~vy~~~~~g----~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~---~~g~--l 132 (394)
T PRK11138 63 LHPAVAYNKVYAADRAG----LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS---EKGQ--V 132 (394)
T ss_pred eccEEECCEEEEECCCC----eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEc---CCCE--E
Confidence 36789999999887665 7999998754 4543 33321110000000000122445567776643 1222 3
Q ss_pred EEee--C--CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 036281 294 WIMK--G--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDL 347 (371)
Q Consensus 294 W~L~--~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~~~v 347 (371)
..++ . ..|+.... ......|+. .++.+++...++.++.+|.+|++..+-
T Consensus 133 ~ald~~tG~~~W~~~~~---~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 133 YALNAEDGEVAWQTKVA---GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWT 185 (394)
T ss_pred EEEECCCCCCcccccCC---CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeee
Confidence 3333 2 56765421 111223433 266777777778899999999987654
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=79.81 E-value=0.53 Score=44.06 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHhcCCccccceeeecccchhhhcCChH
Q 036281 12 DLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPN 48 (371)
Q Consensus 12 ~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~ 48 (371)
.||.+++..||+-|..|++.|++.+|+.|..+..|-.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 6999999999999999999999999999998876643
No 53
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.60 E-value=6.8 Score=21.96 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=21.7
Q ss_pred eCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 036281 321 RKDEFLLESSDKRVILYDSRYHEMRDL 347 (371)
Q Consensus 321 ~~~~il~~~~~~~l~~yd~~~~~~~~v 347 (371)
.+|.+++...++.++.+|.++++..+-
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 356777777789999999999987664
No 54
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=79.38 E-value=29 Score=32.06 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=69.0
Q ss_pred ceEEEC--ceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCC-CC--CcccccCCCcceEEE---eCCeEEEEec----
Q 036281 217 YNVYLN--GYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVP-QT--TTYYQSVKTPWMLGT---YDDCLSLLYS---- 284 (371)
Q Consensus 217 ~~v~~~--G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~-~~--~~~~~~~~~~~~L~~---~~g~L~l~~~---- 284 (371)
.+++.+ |.+||.+..+ .|...|++.+.-...+ |... .. ...+|.++ ..++.. -.|+|++...
T Consensus 188 ~~~~~~~~~~~~F~Sy~G----~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~WrPG-G~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG----NVYSADLSGDSAKFGK-PWSLLTDAEKADGWRPG-GWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp --EEETTTTEEEEEBTTS----EEEEEEETTSSEEEEE-EEESS-HHHHHTTEEE--SSS-EEEETTTTEEEEEEEE--T
T ss_pred ccceECCCCeEEEEecCC----EEEEEeccCCcccccC-cccccCccccccCcCCc-ceeeeeeccccCeEEEEecCCCC
Confidence 445444 6899999887 8999999887643322 1111 00 01123222 233333 4688888431
Q ss_pred -CCCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCE-EEEE-E-cCCeEEEEeCCCCeEE
Q 036281 285 -DKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDE-FLLE-S-SDKRVILYDSRYHEMR 345 (371)
Q Consensus 285 -~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~-~-~~~~l~~yd~~~~~~~ 345 (371)
......=+||+++-..=.++.+|.... -...+.+.++++ +|+. . .+..|.+||..|++..
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred CCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 235668899999985546667775321 123467777665 5543 3 3578999999998753
No 55
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=78.85 E-value=4.6 Score=24.91 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=17.7
Q ss_pred CCcceEEEEEcCCCceeecC
Q 036281 184 HDFSHVAVYNFSTNSWRDLK 203 (371)
Q Consensus 184 ~~~~~~~vy~~~~~~Wr~~~ 203 (371)
.....+++|+..+++|+.++
T Consensus 25 ~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 25 QPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp SBEEEEEEEETTTTEEEEEE
T ss_pred ceeeeEEEEeCCCCEEEEcC
Confidence 34789999999999999986
No 56
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=77.84 E-value=47 Score=28.94 Aligned_cols=195 Identities=12% Similarity=0.048 Sum_probs=102.6
Q ss_pred ecceEEEee--cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceE
Q 036281 112 YDGIFCLLK--SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHV 189 (371)
Q Consensus 112 ~~GLl~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 189 (371)
.+|-|.+.+ ...+ +.++|.+++...+..+. ..|+.++...+. ++... ....
T Consensus 10 ~~g~l~~~D~~~~~i-~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~--l~v~~------------~~~~ 62 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRI-YRVDPDTGEVEVIDLPG------------PNGMAFDRPDGR--LYVAD------------SGGI 62 (246)
T ss_dssp TTTEEEEEETTTTEE-EEEETTTTEEEEEESSS------------EEEEEEECTTSE--EEEEE------------TTCE
T ss_pred CCCEEEEEEcCCCEE-EEEECCCCeEEEEecCC------------CceEEEEccCCE--EEEEE------------cCce
Confidence 356666555 3445 99999998876543333 156666532222 22221 3344
Q ss_pred EEEEcCCCceeecCcccc-ccceeccccceEEECceEEEEEecCC---CC--cEEEEEECCCceEEEe----CCCCCCCC
Q 036281 190 AVYNFSTNSWRDLKGFEM-RFDYMVDRIYNVYLNGYCYWVVCRPD---YS--KAILAFSMSNEVFQEI----KGPSVPQT 259 (371)
Q Consensus 190 ~vy~~~~~~Wr~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~---~~--~~Il~fD~~~e~~~~i----~~P~~~~~ 259 (371)
.+++..++.++.+..... ..+......-.+--+|.+|.-..... .. -.|..++.. .+.+.+ ..|..
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG--- 138 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG--- 138 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE---
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc---
Confidence 666888988887753210 00111112233444688777654331 11 469999999 444433 22211
Q ss_pred CcccccCCCcceEEEeCCe-EEEEecCCCCCEEEEEEeeC--CceeEEEEe-cCCCc--ceeeeEEeeCCEEEEEE-cCC
Q 036281 260 TTYYQSVKTPWMLGTYDDC-LSLLYSDKFAHSFELWIMKG--GFWIKHLTF-GPFIE--TYQPLGFWRKDEFLLES-SDK 332 (371)
Q Consensus 260 ~~~~~~~~~~~~L~~~~g~-L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i-~~~~~--~~~~~~~~~~~~il~~~-~~~ 332 (371)
-...-+|+ |++.. .....+..+-++. ..+.....+ ..... ..--+++..+|.|++.. ..+
T Consensus 139 -----------i~~s~dg~~lyv~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~ 205 (246)
T PF08450_consen 139 -----------IAFSPDGKTLYVAD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG 205 (246)
T ss_dssp -----------EEEETTSSEEEEEE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred -----------eEECCcchheeecc--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence 12234554 44433 3455544444543 335443333 22222 23336666788898874 578
Q ss_pred eEEEEeCCCCeEEEEEEe
Q 036281 333 RVILYDSRYHEMRDLGIT 350 (371)
Q Consensus 333 ~l~~yd~~~~~~~~v~~~ 350 (371)
++..||++.+.++.+.+.
T Consensus 206 ~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 206 RIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EEEEEETTSCEEEEEE-S
T ss_pred EEEEECCCccEEEEEcCC
Confidence 999999997778888877
No 57
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=77.04 E-value=71 Score=30.62 Aligned_cols=102 Identities=11% Similarity=0.123 Sum_probs=58.9
Q ss_pred CcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcce
Q 036281 235 SKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETY 314 (371)
Q Consensus 235 ~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~ 314 (371)
..++.+||+.+.+.+.+..|..... .....+.+.-.+..|.+.. ....|.|-..+-..|...+.|. +..
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~-----~~~e~FeVShd~~fia~~G---~~G~I~lLhakT~eli~s~Kie---G~v 347 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEE-----KSMERFEVSHDSNFIAIAG---NNGHIHLLHAKTKELITSFKIE---GVV 347 (514)
T ss_pred ceEEEEeeccccccccccCCCCccc-----chhheeEecCCCCeEEEcc---cCceEEeehhhhhhhhheeeec---cEE
Confidence 4689999999999999988876553 0001111222333333322 3344444333335566666653 223
Q ss_pred eeeEEeeCCEEEE-EEcCCeEEEEeCCCCeEEEE
Q 036281 315 QPLGFWRKDEFLL-ESSDKRVILYDSRYHEMRDL 347 (371)
Q Consensus 315 ~~~~~~~~~~il~-~~~~~~l~~yd~~~~~~~~v 347 (371)
.-+.+..+++.++ ....+.++++|++++.....
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 4455556666544 45678999999999975443
No 58
>PF13964 Kelch_6: Kelch motif
Probab=76.61 E-value=2 Score=27.13 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=18.0
Q ss_pred CCceEEEeccccccccCCCCCC
Q 036281 122 HTLINLWNVSLNEYRGLPECRP 143 (371)
Q Consensus 122 ~~~~~V~NP~T~~~~~LP~~~~ 143 (371)
+.+ .++||.|++|..+|+.+.
T Consensus 28 ~~v-~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 28 NDV-ERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccE-EEEcCCCCcEEECCCCCC
Confidence 455 999999999999998774
No 59
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=75.93 E-value=7.3 Score=24.44 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=22.0
Q ss_pred eeCCEEEEEEc---------CCeEEEEeCCCCeEEEEEE
Q 036281 320 WRKDEFLLESS---------DKRVILYDSRYHEMRDLGI 349 (371)
Q Consensus 320 ~~~~~il~~~~---------~~~l~~yd~~~~~~~~v~~ 349 (371)
..+++|++... ...+..||+++++|+++.-
T Consensus 9 ~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 9 VLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 34677777632 2469999999999998754
No 60
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=75.90 E-value=7.1 Score=29.67 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=28.3
Q ss_pred EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEe
Q 036281 126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLIL 173 (371)
Q Consensus 126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 173 (371)
.+.||.|+.|..+-+.+. ....+.+.+++..+.|+|+...
T Consensus 12 m~~d~~tk~W~P~~~~~~--------~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 12 MVYDDSNKKWVPAGGGSQ--------GFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred eEEcCCCCcEEcCCCCCC--------CcceEEEEEcCCCCEEEEEEee
Confidence 899999998654323221 2344778888888899999864
No 61
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=74.12 E-value=27 Score=33.13 Aligned_cols=138 Identities=13% Similarity=0.135 Sum_probs=75.5
Q ss_pred eeecceEEEee------cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCC
Q 036281 110 GPYDGIFCLLK------SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSF 183 (371)
Q Consensus 110 ~s~~GLl~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 183 (371)
+--+.||++.- ..++ +|+|..|++..+|......+.......-..+.-||--.+++||++-...
T Consensus 235 A~vG~LILLrI~PY~E~~~Ry-lVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~--------- 304 (448)
T PF12458_consen 235 ARVGNLILLRIRPYREEEWRY-LVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDM--------- 304 (448)
T ss_pred eecCcEEEEEeccCCCcceeE-EEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccC---------
Confidence 44456777765 1378 9999999999998877654332111011223335544566666554211
Q ss_pred CCcceEEEEEcCCCceeecCccccccceeccccceEEECc--eEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCc
Q 036281 184 HDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNG--YCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTT 261 (371)
Q Consensus 184 ~~~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G--~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~ 261 (371)
. .+.+. ..-..=|| ++|.+.......+.+++||+-..+. ..|..++.
T Consensus 305 -------------~----------~l~F~---r~vrSPNGEDvLYvF~~~~~g~~~Ll~YN~I~k~v---~tPi~chG-- 353 (448)
T PF12458_consen 305 -------------D----------GLEFE---RKVRSPNGEDVLYVFYAREEGRYLLLPYNLIRKEV---ATPIICHG-- 353 (448)
T ss_pred -------------C----------CceEE---EEecCCCCceEEEEEEECCCCcEEEEechhhhhhh---cCCeeccc--
Confidence 0 00010 01112233 6777776655578899999877543 44654433
Q ss_pred ccccCCCcceEEEeCCeEEEEecC-CCC---CEEEEEEee
Q 036281 262 YYQSVKTPWMLGTYDDCLSLLYSD-KFA---HSFELWIMK 297 (371)
Q Consensus 262 ~~~~~~~~~~L~~~~g~L~l~~~~-~~~---~~~~iW~L~ 297 (371)
.. .--+|+|+++... ..+ .-++||.--
T Consensus 354 --------~a-lf~DG~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 354 --------YA-LFEDGRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred --------ee-EecCCEEEEEecCCCCcceeccceeecCC
Confidence 12 2258999997753 222 246777654
No 62
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=73.84 E-value=5.9 Score=29.77 Aligned_cols=39 Identities=5% Similarity=0.126 Sum_probs=29.1
Q ss_pred CceEEEecccc-ccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEe
Q 036281 123 TLINLWNVSLN-EYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLIL 173 (371)
Q Consensus 123 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 173 (371)
.+ +++||.|+ .|. |..+. ...+.+-+|+..+.|+||.+.
T Consensus 12 ~V-~~yd~~tKk~Wv--Ps~~~---------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 12 HV-FQIDPKTKKNWI--PASKH---------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EE-EEECCCCcceeE--eCCCC---------ceeEEEEecCCCcEEEEEEec
Confidence 34 99999987 665 54442 235888899999999999864
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=73.26 E-value=0.92 Score=44.88 Aligned_cols=42 Identities=26% Similarity=0.514 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHH
Q 036281 10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIY 51 (371)
Q Consensus 10 ~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~ 51 (371)
+..||.++...||..|+.+++++++.||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 468999999999999999999999999999999998766555
No 64
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=72.94 E-value=63 Score=28.10 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=65.7
Q ss_pred eEEE--CceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEE
Q 036281 218 NVYL--NGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWI 295 (371)
Q Consensus 218 ~v~~--~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~ 295 (371)
+++. +|.|||..... ..|..+|+.+.+...+.+|.... ..+..-+|+|.+... ..+.+.-
T Consensus 5 p~~d~~~g~l~~~D~~~---~~i~~~~~~~~~~~~~~~~~~~G-----------~~~~~~~g~l~v~~~----~~~~~~d 66 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG---GRIYRVDPDTGEVEVIDLPGPNG-----------MAFDRPDGRLYVADS----GGIAVVD 66 (246)
T ss_dssp EEEETTTTEEEEEETTT---TEEEEEETTTTEEEEEESSSEEE-----------EEEECTTSEEEEEET----TCEEEEE
T ss_pred eEEECCCCEEEEEEcCC---CEEEEEECCCCeEEEEecCCCce-----------EEEEccCCEEEEEEc----CceEEEe
Confidence 3455 69999997653 58999999999998888776211 111114577766542 2223332
Q ss_pred eeCCceeEEEEecCCC-ccee--eeEEeeCCEEEEEEcC---------CeEEEEeCCCCeEEEE
Q 036281 296 MKGGFWIKHLTFGPFI-ETYQ--PLGFWRKDEFLLESSD---------KRVILYDSRYHEMRDL 347 (371)
Q Consensus 296 L~~~~W~~~~~i~~~~-~~~~--~~~~~~~~~il~~~~~---------~~l~~yd~~~~~~~~v 347 (371)
++...++......... .... -+.+.++|.+++.... ++++.++.+ ++.+.+
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred cCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 2225666666653111 2333 3666778888886421 468888888 665554
No 65
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=72.45 E-value=71 Score=28.47 Aligned_cols=137 Identities=10% Similarity=0.032 Sum_probs=75.6
Q ss_pred CcceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCc-eEEEeCCCCCCCCCccc
Q 036281 185 DFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNE-VFQEIKGPSVPQTTTYY 263 (371)
Q Consensus 185 ~~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e-~~~~i~~P~~~~~~~~~ 263 (371)
....+..|++.+++=.... ++|.....-.-+.+++.+|-++... ...+.||..+- .-..++.|..
T Consensus 66 G~S~l~~~d~~tg~~~~~~----~l~~~~FgEGit~~~d~l~qLTWk~---~~~f~yd~~tl~~~~~~~y~~E------- 131 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSV----PLPPRYFGEGITILGDKLYQLTWKE---GTGFVYDPNTLKKIGTFPYPGE------- 131 (264)
T ss_dssp TEEEEEEEETTTSSEEEEE----E-TTT--EEEEEEETTEEEEEESSS---SEEEEEETTTTEEEEEEE-SSS-------
T ss_pred CcEEEEEEECCCCcEEEEE----ECCccccceeEEEECCEEEEEEecC---CeEEEEccccceEEEEEecCCc-------
Confidence 3678888898887543322 2222222234468899999999875 68899999863 3344555532
Q ss_pred ccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceee------eEEeeCCEEEEEEc-CCeEEE
Q 036281 264 QSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQP------LGFWRKDEFLLESS-DKRVIL 336 (371)
Q Consensus 264 ~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~------~~~~~~~~il~~~~-~~~l~~ 336 (371)
.+-|+.-+..|.+.. ... .|+.++-.......+|.-.. -..| +.+ -+|.|+-... .+.++.
T Consensus 132 -----GWGLt~dg~~Li~SD---GS~--~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~-i~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 132 -----GWGLTSDGKRLIMSD---GSS--RLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEY-INGKIYANVWQTDRIVR 199 (264)
T ss_dssp -------EEEECSSCEEEE----SSS--EEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEE-ETTEEEEEETTSSEEEE
T ss_pred -----ceEEEcCCCEEEEEC---Ccc--ceEEECCcccceEEEEEEEE-CCEECCCcEeEEE-EcCEEEEEeCCCCeEEE
Confidence 234554455555432 223 55666643444444443211 1122 222 2777777653 678999
Q ss_pred EeCCCCeEEEE
Q 036281 337 YDSRYHEMRDL 347 (371)
Q Consensus 337 yd~~~~~~~~v 347 (371)
-|++|+++...
T Consensus 200 Idp~tG~V~~~ 210 (264)
T PF05096_consen 200 IDPETGKVVGW 210 (264)
T ss_dssp EETTT-BEEEE
T ss_pred EeCCCCeEEEE
Confidence 99999987544
No 66
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.79 E-value=8.5 Score=22.71 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=21.2
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEEEE
Q 036281 323 DEFLLESSDKRVILYDSRYHEMRDLGI 349 (371)
Q Consensus 323 ~~il~~~~~~~l~~yd~~~~~~~~v~~ 349 (371)
|.+++...++.++.+|.+|++..+-.-
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeee
Confidence 456666678899999999999877643
No 67
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=71.16 E-value=17 Score=22.61 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=17.4
Q ss_pred eeCCEEEEEEc-------CCeEEEEeCCCCeEEEE
Q 036281 320 WRKDEFLLESS-------DKRVILYDSRYHEMRDL 347 (371)
Q Consensus 320 ~~~~~il~~~~-------~~~l~~yd~~~~~~~~v 347 (371)
..++.|++... -..+..||+++++|+++
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 34567666521 23689999999999987
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=70.40 E-value=98 Score=29.25 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=58.2
Q ss_pred cceEEECceEEEEEecCCCCcEEEEEECCCc--eEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEE
Q 036281 216 IYNVYLNGYCYWVVCRPDYSKAILAFSMSNE--VFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFEL 293 (371)
Q Consensus 216 ~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e--~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i 293 (371)
..++..+|.+|.....+ .+.++|..+. .|+. +.+.. ..++..+|.|++... ...+..
T Consensus 250 ~sP~v~~~~vy~~~~~g----~l~ald~~tG~~~W~~-~~~~~-------------~~~~~~~~~vy~~~~---~g~l~a 308 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG----NLVALDLRSGQIVWKR-EYGSV-------------NDFAVDGGRIYLVDQ---NDRVYA 308 (394)
T ss_pred CCcEEECCEEEEEEcCC----eEEEEECCCCCEEEee-cCCCc-------------cCcEEECCEEEEEcC---CCeEEE
Confidence 46788899999877655 8999999875 4653 22110 012334455544331 111111
Q ss_pred EEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 036281 294 WIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDL 347 (371)
Q Consensus 294 W~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~~~v 347 (371)
.-.+. ..|.... .. ......|.. .+|.+++...++.++.+|.++++..+-
T Consensus 309 ld~~tG~~~W~~~~-~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 309 LDTRGGVELWSQSD-LL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EECCCCcEEEcccc-cC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 11111 2343211 00 011223433 367888888888999999999986543
No 69
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.06 E-value=83 Score=28.28 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=69.7
Q ss_pred EEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEe-------cCCCCCEEEEEEeeC-
Q 036281 227 WVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLY-------SDKFAHSFELWIMKG- 298 (371)
Q Consensus 227 wl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~-------~~~~~~~~~iW~L~~- 298 (371)
|++..+ ..|..+|.++..++.+++|....+ .+.......-.|.|.+.. .+.....++||---.
T Consensus 118 Witd~~---~aI~R~dpkt~evt~f~lp~~~a~------~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG 188 (353)
T COG4257 118 WITDTG---LAIGRLDPKTLEVTRFPLPLEHAD------ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG 188 (353)
T ss_pred eEecCc---ceeEEecCcccceEEeecccccCC------CcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC
Confidence 555444 289999999999999999965443 112223334455555522 133455666665433
Q ss_pred ------------CceeE------EEEecCCCc----ceeeeE---------EeeCCEEEEEE-cCCeEEEEeCCCCeEEE
Q 036281 299 ------------GFWIK------HLTFGPFIE----TYQPLG---------FWRKDEFLLES-SDKRVILYDSRYHEMRD 346 (371)
Q Consensus 299 ------------~~W~~------~~~i~~~~~----~~~~~~---------~~~~~~il~~~-~~~~l~~yd~~~~~~~~ 346 (371)
+.|.- .-+|+|... +..|-. ...-|.+.... ....++.||+.++.|.+
T Consensus 189 ~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~e 268 (353)
T COG4257 189 GGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIE 268 (353)
T ss_pred CCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccccee
Confidence 55644 335555432 222222 22345566654 35789999999999998
Q ss_pred EEEecc
Q 036281 347 LGITGL 352 (371)
Q Consensus 347 v~~~~~ 352 (371)
-.+.|.
T Consensus 269 ypLPgs 274 (353)
T COG4257 269 YPLPGS 274 (353)
T ss_pred eeCCCC
Confidence 877653
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=68.74 E-value=1.1e+02 Score=29.08 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=44.0
Q ss_pred EeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCC-CcceeeeEEee--CCEEEEE-EcCCeEEEEeCCCCeEEEE
Q 036281 274 TYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPF-IETYQPLGFWR--KDEFLLE-SSDKRVILYDSRYHEMRDL 347 (371)
Q Consensus 274 ~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~-~~~~~~~~~~~--~~~il~~-~~~~~l~~yd~~~~~~~~v 347 (371)
.-+|+++++. -....+.+|-++| |..+.+..-+ .+.+..-.|.. +.+++.. +++.+++.||.+++++-.+
T Consensus 404 S~d~k~~Lvn--L~~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 404 SKDGKLALVN--LQDQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred cCCCcEEEEE--cccCeeEEeecch--hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 4689999987 4788999999986 4443332222 22232222222 3355555 4678999999998886444
No 71
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.30 E-value=48 Score=30.72 Aligned_cols=88 Identities=10% Similarity=-0.001 Sum_probs=52.7
Q ss_pred ccceEEECceEEEEEecCCCCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEEecCCC--C---
Q 036281 215 RIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKF--A--- 288 (371)
Q Consensus 215 ~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~--~--- 288 (371)
...+...+.++|--..+.......+.++--+..|+.+. .|..... ...-+.++|+|.++.--.. .
T Consensus 39 nG~Ga~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rn---------qa~~a~~~~kLyvFgG~Gk~~~~~~ 109 (381)
T COG3055 39 NGAGALIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARN---------QAVAAVIGGKLYVFGGYGKSVSSSP 109 (381)
T ss_pred ccccceecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccc---------cchheeeCCeEEEeeccccCCCCCc
Confidence 44566777788876654322344444444456898884 4654322 3345678999999652111 1
Q ss_pred -CEEEEEEeeC--CceeEEEEecCCC
Q 036281 289 -HSFELWIMKG--GFWIKHLTFGPFI 311 (371)
Q Consensus 289 -~~~~iW~L~~--~~W~~~~~i~~~~ 311 (371)
.--++...+. .+|.++.+..|..
T Consensus 110 ~~~nd~Y~y~p~~nsW~kl~t~sP~g 135 (381)
T COG3055 110 QVFNDAYRYDPSTNSWHKLDTRSPTG 135 (381)
T ss_pred eEeeeeEEecCCCChhheeccccccc
Confidence 1234556655 8899999887764
No 72
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=66.43 E-value=83 Score=26.87 Aligned_cols=137 Identities=12% Similarity=0.014 Sum_probs=74.8
Q ss_pred eEEEEEcCCC--ceeecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEE-EeCCCCCCCCCcccc
Q 036281 188 HVAVYNFSTN--SWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQ-EIKGPSVPQTTTYYQ 264 (371)
Q Consensus 188 ~~~vy~~~~~--~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~-~i~~P~~~~~~~~~~ 264 (371)
.+..++..++ -|+.--.. . .......++.-+|.+|-....+ .|.++|..+.+.. ...++.....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~--~--~~~~~~~~~~~~~~v~~~~~~~----~l~~~d~~tG~~~W~~~~~~~~~~----- 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP--G--IGGPVATAVPDGGRVYVASGDG----NLYALDAKTGKVLWRFDLPGPISG----- 70 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS--S--CSSEEETEEEETTEEEEEETTS----EEEEEETTTSEEEEEEECSSCGGS-----
T ss_pred EEEEEECCCCCEEEEEECCC--C--CCCccceEEEeCCEEEEEcCCC----EEEEEECCCCCEEEEeeccccccc-----
Confidence 4566777665 48774211 1 1000113455788888875444 8999998665432 2233443222
Q ss_pred cCCCcceEEEeCCeEEEEecCCCCCEEEEEEee--C--CceeEEEEecCCCcceee-eEEeeCCEEEEEEcCCeEEEEeC
Q 036281 265 SVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMK--G--GFWIKHLTFGPFIETYQP-LGFWRKDEFLLESSDKRVILYDS 339 (371)
Q Consensus 265 ~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~--~--~~W~~~~~i~~~~~~~~~-~~~~~~~~il~~~~~~~l~~yd~ 339 (371)
.....++.+++.. ... .|+.++ . ..|.......+......+ .....++.+++....+.++.+|+
T Consensus 71 ------~~~~~~~~v~v~~---~~~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 71 ------APVVDGGRVYVGT---SDG--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp ------GEEEETTEEEEEE---TTS--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred ------eeeeccccccccc---cee--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 1356777777755 222 555555 2 567732222222112222 22223566777777889999999
Q ss_pred CCCeEEEEE
Q 036281 340 RYHEMRDLG 348 (371)
Q Consensus 340 ~~~~~~~v~ 348 (371)
++++..+-.
T Consensus 140 ~tG~~~w~~ 148 (238)
T PF13360_consen 140 KTGKLLWKY 148 (238)
T ss_dssp TTTEEEEEE
T ss_pred CCCcEEEEe
Confidence 999875553
No 73
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=64.03 E-value=1.8e+02 Score=30.55 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=25.3
Q ss_pred ccceEEECceEEEEEecCCCCcEEEEEECCC--ceEEE
Q 036281 215 RIYNVYLNGYCYWVVCRPDYSKAILAFSMSN--EVFQE 250 (371)
Q Consensus 215 ~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~--e~~~~ 250 (371)
...++.++|++|.-+..+ .|.++|..+ +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~----~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN----KVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCC----eEEEEECCCCcEEEEE
Confidence 457899999999987655 899999886 45654
No 74
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=61.86 E-value=59 Score=33.50 Aligned_cols=57 Identities=16% Similarity=0.302 Sum_probs=40.9
Q ss_pred CCCCEEEEEEeeC--------CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCC
Q 036281 286 KFAHSFELWIMKG--------GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYH 342 (371)
Q Consensus 286 ~~~~~~~iW~L~~--------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~ 342 (371)
..+..+.||++.+ ..|+....=.....-....++.+||.++...-++.+..||..++
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 4678999999965 67988753222211123355667999999988899999999984
No 75
>PLN02772 guanylate kinase
Probab=61.54 E-value=62 Score=30.72 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=50.2
Q ss_pred ccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeCC---CCCCCCCcccccCCCcceEEEeCCeEEEEecCCCC
Q 036281 215 RIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIKG---PSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFA 288 (371)
Q Consensus 215 ~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~~---P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~ 288 (371)
...+|.+++++|.+..... ....+-.||..+.+|..-.. |+...+ .+..++.-+++|-++.. ...
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~--------GhSa~v~~~~rilv~~~-~~~ 97 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK--------GYSAVVLNKDRILVIKK-GSA 97 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC--------cceEEEECCceEEEEeC-CCC
Confidence 3467899999998885432 23579999999999986431 222222 23445556788888764 334
Q ss_pred CEEEEEEeeC
Q 036281 289 HSFELWIMKG 298 (371)
Q Consensus 289 ~~~~iW~L~~ 298 (371)
..=.||.|+-
T Consensus 98 ~~~~~w~l~~ 107 (398)
T PLN02772 98 PDDSIWFLEV 107 (398)
T ss_pred CccceEEEEc
Confidence 4578999985
No 76
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=60.41 E-value=15 Score=21.78 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=18.8
Q ss_pred cceEEECceEEEEEecCCCCcEEEEEECCC
Q 036281 216 IYNVYLNGYCYWVVCRPDYSKAILAFSMSN 245 (371)
Q Consensus 216 ~~~v~~~G~lywl~~~~~~~~~Il~fD~~~ 245 (371)
..++..+|.+|.-...+ .|.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg----~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG----NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS----EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC----EEEEEeCCC
Confidence 46688899999988766 899999864
No 77
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=59.64 E-value=24 Score=25.64 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.6
Q ss_pred CCeEEEEeCCCCeEEEE
Q 036281 331 DKRVILYDSRYHEMRDL 347 (371)
Q Consensus 331 ~~~l~~yd~~~~~~~~v 347 (371)
.++++.||++||+.+.+
T Consensus 36 ~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVL 52 (89)
T ss_dssp -EEEEEEETTTTEEEEE
T ss_pred CcCEEEEECCCCeEEEe
Confidence 36899999999998877
No 78
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=57.95 E-value=2e+02 Score=28.35 Aligned_cols=204 Identities=13% Similarity=0.116 Sum_probs=97.5
Q ss_pred CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCc--e
Q 036281 122 HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNS--W 199 (371)
Q Consensus 122 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~--W 199 (371)
+.+ .|+|-+|+||. +|...-+.+. ...++||.+| .-|++++...-. .....-+.|.+...+ |
T Consensus 57 DEL-HvYNTatnqWf-~PavrGDiPp----gcAA~Gfvcd----GtrilvFGGMvE------YGkYsNdLYELQasRWeW 120 (830)
T KOG4152|consen 57 DEL-HVYNTATNQWF-APAVRGDIPP----GCAAFGFVCD----GTRILVFGGMVE------YGKYSNDLYELQASRWEW 120 (830)
T ss_pred hhh-hhhccccceee-cchhcCCCCC----chhhcceEec----CceEEEEccEee------eccccchHHHhhhhhhhH
Confidence 356 99999999997 4544433221 3334555544 345666643211 113445667777654 5
Q ss_pred eecCcccc--ccceecc-ccceEEECceEEEEEecCC-------------CCcEEEEEECCCce--EEEe----CCCCCC
Q 036281 200 RDLKGFEM--RFDYMVD-RIYNVYLNGYCYWVVCRPD-------------YSKAILAFSMSNEV--FQEI----KGPSVP 257 (371)
Q Consensus 200 r~~~~~~~--~~~~~~~-~~~~v~~~G~lywl~~~~~-------------~~~~Il~fD~~~e~--~~~i----~~P~~~ 257 (371)
|.+....+ ..|-+.. ..+=+.++.+.|.+..-.+ ...+|+-+-..+.. |... .+|...
T Consensus 121 krlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pR 200 (830)
T KOG4152|consen 121 KRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPR 200 (830)
T ss_pred hhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCc
Confidence 66542211 1111111 2232445567777764321 33455555544442 4332 134443
Q ss_pred CCCcccccCCCcce-EEEeC---CeEEEEecCCCCCEEEEEEeeC--CceeEEE--EecCCCc-c------eeeeEEeeC
Q 036281 258 QTTTYYQSVKTPWM-LGTYD---DCLSLLYSDKFAHSFELWIMKG--GFWIKHL--TFGPFIE-T------YQPLGFWRK 322 (371)
Q Consensus 258 ~~~~~~~~~~~~~~-L~~~~---g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~--~i~~~~~-~------~~~~~~~~~ 322 (371)
+. .... -.+-+ -++.++.-....+-=++|.|+- -.|.+-- .+.|++. + ..-+.+. +
T Consensus 201 ES--------HTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvf-G 271 (830)
T KOG4152|consen 201 ES--------HTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVF-G 271 (830)
T ss_pred cc--------ceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEe-c
Confidence 33 1111 11211 2333333222334448999986 7898742 3334431 1 1111111 1
Q ss_pred CEEEEE--------E-----cCCeEEEEeCCCCeEEEEEEe
Q 036281 323 DEFLLE--------S-----SDKRVILYDSRYHEMRDLGIT 350 (371)
Q Consensus 323 ~~il~~--------~-----~~~~l~~yd~~~~~~~~v~~~ 350 (371)
|.+=+. + ....+-++|+.+.+|+.+..+
T Consensus 272 GWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d 312 (830)
T KOG4152|consen 272 GWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMD 312 (830)
T ss_pred ceeeeeccccccccccceeeeccceeeeeecchheeeeeec
Confidence 221111 0 124588999999999988664
No 79
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=53.23 E-value=1.9e+02 Score=26.90 Aligned_cols=106 Identities=9% Similarity=0.025 Sum_probs=57.9
Q ss_pred cceEEECceEEEEEecCCCCcEEEEEECCCce--EEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEE
Q 036281 216 IYNVYLNGYCYWVVCRPDYSKAILAFSMSNEV--FQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFEL 293 (371)
Q Consensus 216 ~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~--~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i 293 (371)
..++..+|.+|.....+ .+.++|..+.+ |+. +.+.. ...+..+|.+++.. ....+..
T Consensus 235 ~~p~~~~~~vy~~~~~g----~l~a~d~~tG~~~W~~-~~~~~-------------~~p~~~~~~vyv~~---~~G~l~~ 293 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQG----RVAALDLRSGRVLWKR-DASSY-------------QGPAVDDNRLYVTD---ADGVVVA 293 (377)
T ss_pred CccEEECCEEEEEEcCC----EEEEEECCCCcEEEee-ccCCc-------------cCceEeCCEEEEEC---CCCeEEE
Confidence 35677889999877665 79999997653 433 11111 11223345544432 2233333
Q ss_pred EEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCeEEE
Q 036281 294 WIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRD 346 (371)
Q Consensus 294 W~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~~~ 346 (371)
+-... ..|.... +. ......|.. .++.+++...++.++.+|.++++..+
T Consensus 294 ~d~~tG~~~W~~~~-~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 294 LDRRSGSELWKNDE-LK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred EECCCCcEEEcccc-cc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 33322 2344311 11 111223332 35678887888899999999887654
No 80
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=53.15 E-value=1.8e+02 Score=26.59 Aligned_cols=104 Identities=11% Similarity=-0.100 Sum_probs=59.3
Q ss_pred ceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeC-Cce
Q 036281 223 GYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKG-GFW 301 (371)
Q Consensus 223 G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~-~~W 301 (371)
+.+||..-.+ ..|..+|..+.+-+.+..|..... ..+.+-+|.|..+. ..+.++..+. ..|
T Consensus 37 ~~L~w~DI~~---~~i~r~~~~~g~~~~~~~p~~~~~----------~~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~ 98 (307)
T COG3386 37 GALLWVDILG---GRIHRLDPETGKKRVFPSPGGFSS----------GALIDAGGRLIACE-----HGVRLLDPDTGGKI 98 (307)
T ss_pred CEEEEEeCCC---CeEEEecCCcCceEEEECCCCccc----------ceeecCCCeEEEEc-----cccEEEeccCCcee
Confidence 4678877653 589999999998998888876532 34455566666544 2223333332 344
Q ss_pred eEEEEecCCCcc--eeeeEEeeCCEEEEEEc------------CCeEEEEeCCCCeE
Q 036281 302 IKHLTFGPFIET--YQPLGFWRKDEFLLESS------------DKRVILYDSRYHEM 344 (371)
Q Consensus 302 ~~~~~i~~~~~~--~~~~~~~~~~~il~~~~------------~~~l~~yd~~~~~~ 344 (371)
+....+...... ..-..+..+|.|++..- .+.|+.+|+..+..
T Consensus 99 t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~ 155 (307)
T COG3386 99 TLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV 155 (307)
T ss_pred EEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE
Confidence 333333211111 22244556777777521 13599999854443
No 81
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=52.89 E-value=1.9e+02 Score=26.76 Aligned_cols=153 Identities=13% Similarity=0.057 Sum_probs=79.9
Q ss_pred cceEEEEEcCCCceeecCccccccceeccccceE-EECceE-EEEEecCCCCcEEEEEECCCceEEEeC----CCCCCCC
Q 036281 186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNV-YLNGYC-YWVVCRPDYSKAILAFSMSNEVFQEIK----GPSVPQT 259 (371)
Q Consensus 186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v-~~~G~l-ywl~~~~~~~~~Il~fD~~~e~~~~i~----~P~~~~~ 259 (371)
.-++.+|++..+.-...... .+.-......-+ .=||.+ |.+..-. ..-.+..+|....++..++ +|.....
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~--~v~~G~GPRHi~FHpn~k~aY~v~EL~-stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPA--EVKPGAGPRHIVFHPNGKYAYLVNELN-STVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred CceEEEEEcccCcccccccc--ccCCCCCcceEEEcCCCcEEEEEeccC-CEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 45678888887766655422 111111111223 334644 4444432 3334555555557887765 5766544
Q ss_pred CcccccCCCcceEEE-eCCeEEEEecCCCCCEEEEEEeeC--CceeEEEEecCCCc-ceeeeEEeeCCEEEEEE--cCCe
Q 036281 260 TTYYQSVKTPWMLGT-YDDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFGPFIE-TYQPLGFWRKDEFLLES--SDKR 333 (371)
Q Consensus 260 ~~~~~~~~~~~~L~~-~~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~~~~~-~~~~~~~~~~~~il~~~--~~~~ 333 (371)
.. ....+-. -+|+.-+++. ....+|.+....+ ..-..+-.. +..+ ..+-+-+..+|++|++. +++.
T Consensus 243 -----~~-~~aaIhis~dGrFLYasN-Rg~dsI~~f~V~~~~g~L~~~~~~-~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 243 -----TN-WAAAIHISPDGRFLYASN-RGHDSIAVFSVDPDGGKLELVGIT-PTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred -----CC-ceeEEEECCCCCEEEEec-CCCCeEEEEEEcCCCCEEEEEEEe-ccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 11 2222332 4666555554 4555777777776 222222222 2222 24556677788887773 3343
Q ss_pred --EEEEeCCCCeEEEEEE
Q 036281 334 --VILYDSRYHEMRDLGI 349 (371)
Q Consensus 334 --l~~yd~~~~~~~~v~~ 349 (371)
++.-|.+|+++..+..
T Consensus 315 i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 315 ITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEEEcCCCceEEeccc
Confidence 5555778888877754
No 82
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=52.72 E-value=1.6e+02 Score=25.88 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=72.8
Q ss_pred cceeccccceEEECceEEEEEecCCCCcEEEEEECCCce-EEEeCCCCCCCCC--cccccCCCcceEEEeCCeEEEE-ec
Q 036281 209 FDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEV-FQEIKGPSVPQTT--TYYQSVKTPWMLGTYDDCLSLL-YS 284 (371)
Q Consensus 209 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~-~~~i~~P~~~~~~--~~~~~~~~~~~L~~~~g~L~l~-~~ 284 (371)
+|..+....-|+.||.+|..... ...|+.||++++. .....+|...... .-.+.......+++-+.-|.++ ..
T Consensus 64 lp~~~~gTg~VVynGs~yynk~~---t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat 140 (249)
T KOG3545|consen 64 LPYSWDGTGHVVYNGSLYYNKAG---TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYAT 140 (249)
T ss_pred CCCCccccceEEEcceEEeeccC---CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecc
Confidence 44444445669999999998754 3689999999954 3444566543220 0111122456677666666663 33
Q ss_pred CCCCCEEEEEEeeC------CceeEEEEecCCCcceeeeEEeeCCEEEEEEc----CCeE-EEEeCCCCeEEEEEEe
Q 036281 285 DKFAHSFELWIMKG------GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS----DKRV-ILYDSRYHEMRDLGIT 350 (371)
Q Consensus 285 ~~~~~~~~iW~L~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~----~~~l-~~yd~~~~~~~~v~~~ 350 (371)
..+...+.|=.|+. ..|.-.+ +...... ++.-.|.+..... ...+ +.||..+++-+.+.++
T Consensus 141 ~~~~g~iv~skLdp~tl~~e~tW~T~~---~k~~~~~--aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 141 PENAGTIVLSKLDPETLEVERTWNTTL---PKRSAGN--AFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred cccCCcEEeeccCHHHhheeeeecccc---CCCCcCc--eEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 34455555555554 3342221 1111111 1112355555532 2333 6999999988877754
No 83
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=51.09 E-value=2.1e+02 Score=26.67 Aligned_cols=141 Identities=9% Similarity=0.073 Sum_probs=69.0
Q ss_pred eEEEEEcCCC--ceeecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCc--eEEE-eCCCCCCCCCcc
Q 036281 188 HVAVYNFSTN--SWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNE--VFQE-IKGPSVPQTTTY 262 (371)
Q Consensus 188 ~~~vy~~~~~--~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e--~~~~-i~~P~~~~~~~~ 262 (371)
.+..++..++ .|+..... +.... .....++..+|.+|.-...+ .+.++|+.+. .|+. +..|..... ..
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~-~~~~~-~~~~sp~~~~~~v~~~~~~g----~v~ald~~tG~~~W~~~~~~~~g~~~-~~ 228 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVT-PALTL-RGSASPVIADGGVLVGFAGG----KLVALDLQTGQPLWEQRVALPKGRTE-LE 228 (377)
T ss_pred eEEEEEcCCCceeeEEccCC-Cceee-cCCCCCEEECCEEEEECCCC----EEEEEEccCCCEeeeeccccCCCCCc-hh
Confidence 4566676654 58765321 01111 11245677888877654433 7999999775 4532 222321110 00
Q ss_pred cccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCC
Q 036281 263 YQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSR 340 (371)
Q Consensus 263 ~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~ 340 (371)
. ...........+|.+++.. ....+..+-++. ..|.... .....|. + .++.+++...++.++.+|..
T Consensus 229 ~-~~~~~~~p~~~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~-----~~~~~p~-~-~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 229 R-LVDVDGDPVVDGGQVYAVS---YQGRVAALDLRSGRVLWKRDA-----SSYQGPA-V-DDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred h-hhccCCccEEECCEEEEEE---cCCEEEEEECCCCcEEEeecc-----CCccCce-E-eCCEEEEECCCCeEEEEECC
Confidence 0 0000111223455555533 223344444433 3454431 1112222 2 36678877778889999998
Q ss_pred CCeEEE
Q 036281 341 YHEMRD 346 (371)
Q Consensus 341 ~~~~~~ 346 (371)
+++..+
T Consensus 298 tG~~~W 303 (377)
T TIGR03300 298 SGSELW 303 (377)
T ss_pred CCcEEE
Confidence 886543
No 84
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=51.07 E-value=2.6e+02 Score=28.85 Aligned_cols=122 Identities=7% Similarity=0.086 Sum_probs=68.0
Q ss_pred ceEEECceEEEEEecC--------CCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcc-eE-EE-eCCeEEEEecC
Q 036281 217 YNVYLNGYCYWVVCRP--------DYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPW-ML-GT-YDDCLSLLYSD 285 (371)
Q Consensus 217 ~~v~~~G~lywl~~~~--------~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~-~L-~~-~~g~L~l~~~~ 285 (371)
...+..+.-||+.... +..-.+++-+.+++.|...++|...-.+.-. ...... .+ .+ .++-|++-+
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS-is~~~I~t~~~N~tGDWiA~g~-- 326 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS-ISDQKILTVSFNSTGDWIAFGC-- 326 (893)
T ss_pred ceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee-cccceeeEEEecccCCEEEEcC--
Confidence 4467778888887442 1456799999999999999999864220000 000111 11 12 244555533
Q ss_pred CCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEE-cCCeEEEEeCCCCe
Q 036281 286 KFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLES-SDKRVILYDSRYHE 343 (371)
Q Consensus 286 ~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~~~~ 343 (371)
.....+-||..+.++.+++.. -+..-..-+...+||.++... .++++-+||..++-
T Consensus 327 ~klgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 327 SKLGQLLVWEWQSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred CccceEEEEEeeccceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 356789999887644333322 111112234445567666653 45667777766543
No 85
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=48.98 E-value=2.3e+02 Score=26.54 Aligned_cols=118 Identities=12% Similarity=0.134 Sum_probs=68.8
Q ss_pred EECceEEEEEecCCCCcEEEEEECCCce------EEEeCCCCCCCCCcccccCCCcceEEE---eCCeEEEEecCC----
Q 036281 220 YLNGYCYWVVCRPDYSKAILAFSMSNEV------FQEIKGPSVPQTTTYYQSVKTPWMLGT---YDDCLSLLYSDK---- 286 (371)
Q Consensus 220 ~~~G~lywl~~~~~~~~~Il~fD~~~e~------~~~i~~P~~~~~~~~~~~~~~~~~L~~---~~g~L~l~~~~~---- 286 (371)
-.+|..+|.+..+ .|..+|++... |..+..-.. .. +|.+ ...+.+. -+++|++.....
T Consensus 203 ~~dg~~~~vs~eG----~V~~id~~~~~~~~~~~~~~~~~~~~-~~---~wrP-~g~q~ia~~~dg~~lyV~~~~~~~~t 273 (352)
T TIGR02658 203 NKSGRLVWPTYTG----KIFQIDLSSGDAKFLPAIEAFTEAEK-AD---GWRP-GGWQQVAYHRARDRIYLLADQRAKWT 273 (352)
T ss_pred cCCCcEEEEecCC----eEEEEecCCCcceecceeeecccccc-cc---ccCC-CcceeEEEcCCCCEEEEEecCCcccc
Confidence 3379999999876 88999975542 333321100 00 1111 1222222 346666633111
Q ss_pred -CCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCE-EEEEE--cCCeEEEEeCCCCe-EEEE
Q 036281 287 -FAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDE-FLLES--SDKRVILYDSRYHE-MRDL 347 (371)
Q Consensus 287 -~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~--~~~~l~~yd~~~~~-~~~v 347 (371)
....=+||+++-.++....+|..-. -...+.+.+|++ .++.. .++.+.++|..+.+ ++.+
T Consensus 274 hk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 274 HKTASRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 1222388998877888888875322 344577888888 66654 35669999999885 4555
No 86
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=48.56 E-value=27 Score=25.00 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.8
Q ss_pred CeEEEEeCCCCeEEEEEEe
Q 036281 332 KRVILYDSRYHEMRDLGIT 350 (371)
Q Consensus 332 ~~l~~yd~~~~~~~~v~~~ 350 (371)
..+.+||++.+.||.+.++
T Consensus 49 ~s~~yfDve~~~WRSFk~d 67 (83)
T PF10902_consen 49 TSVRYFDVEKKGWRSFKID 67 (83)
T ss_pred ceEEEEEeccCceeeeehe
Confidence 4699999999999999776
No 87
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=45.52 E-value=2.6e+02 Score=26.11 Aligned_cols=138 Identities=11% Similarity=-0.012 Sum_probs=76.2
Q ss_pred cceEEEEEcCCCceeecCccccccceeccccc-eEEECceEEEEEecCCCCcEEEEEECCCce--EEEeCCCCCCCCCcc
Q 036281 186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIY-NVYLNGYCYWVVCRPDYSKAILAFSMSNEV--FQEIKGPSVPQTTTY 262 (371)
Q Consensus 186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~Il~fD~~~e~--~~~i~~P~~~~~~~~ 262 (371)
...+.....++..|...... ...... ... ++..+|++|.....+ .|.+||.++.+ |+.-... ....
T Consensus 34 ~~~~~~~~~g~~~W~~~~~~--~~~~~~-~~~~~~~~dg~v~~~~~~G----~i~A~d~~~g~~~W~~~~~~-~~~~--- 102 (370)
T COG1520 34 LVAVANNTSGTLLWSVSLGS--GGGGIY-AGPAPADGDGTVYVGTRDG----NIFALNPDTGLVKWSYPLLG-AVAQ--- 102 (370)
T ss_pred ceEEEcccCcceeeeeeccc--CccceE-eccccEeeCCeEEEecCCC----cEEEEeCCCCcEEecccCcC-ccee---
Confidence 34555566667788643111 011111 122 599999999986665 79999999866 6543332 0000
Q ss_pred cccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeC----CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEe
Q 036281 263 YQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKG----GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYD 338 (371)
Q Consensus 263 ~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~----~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd 338 (371)
...-+...+|++.+-..+. .++.|+. ..|.....- . ..+..+ .+..++.+++...++.++..|
T Consensus 103 -----~~~~~~~~~G~i~~g~~~g-----~~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~~~~v~~~s~~g~~~al~ 169 (370)
T COG1520 103 -----LSGPILGSDGKIYVGSWDG-----KLYALDASTGTLVWSRNVGG-S-PYYASP-PVVGDGTVYVGTDDGHLYALN 169 (370)
T ss_pred -----ccCceEEeCCeEEEecccc-----eEEEEECCCCcEEEEEecCC-C-eEEecC-cEEcCcEEEEecCCCeEEEEE
Confidence 1111222377765533211 6666665 345554332 1 111122 122366677766678999999
Q ss_pred CCCCeEEEE
Q 036281 339 SRYHEMRDL 347 (371)
Q Consensus 339 ~~~~~~~~v 347 (371)
.+|++.++.
T Consensus 170 ~~tG~~~W~ 178 (370)
T COG1520 170 ADTGTLKWT 178 (370)
T ss_pred ccCCcEEEE
Confidence 999987666
No 88
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=45.40 E-value=1.8e+02 Score=26.15 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=48.2
Q ss_pred EeCCeEEEEecCCCCCEEEEEEeeC-CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCeE-EEEEEec
Q 036281 274 TYDDCLSLLYSDKFAHSFELWIMKG-GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEM-RDLGITG 351 (371)
Q Consensus 274 ~~~g~L~l~~~~~~~~~~~iW~L~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~-~~v~~~~ 351 (371)
.-+|.||... .....+-+|-|++ .. .|..+-.. +.+.+++.++.--|..-....+-.||++++.. +++..++
T Consensus 201 SpDGslcasG--gkdg~~~LwdL~~~k~---lysl~a~~-~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 201 SPDGSLCASG--GKDGEAMLWDLNEGKN---LYSLEAFD-IVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred CCCCCEEecC--CCCceEEEEEccCCce---eEeccCCC-eEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccc
Confidence 3689999976 6788999999998 22 45443332 45566776654334444566799999999874 5555543
No 89
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=43.15 E-value=2.4e+02 Score=28.08 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=51.1
Q ss_pred EEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeE----EEEecCCCc
Q 036281 237 AILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIK----HLTFGPFIE 312 (371)
Q Consensus 237 ~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~----~~~i~~~~~ 312 (371)
.|..||++..+|-. |..... ..-..+.+-+++|-|++ ......++-|-....+=.. ...|+-.++
T Consensus 156 evYRlNLEqGrfL~---P~~~~~-----~~lN~v~in~~hgLla~---Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLN---PFETDS-----GELNVVSINEEHGLLAC---GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG 224 (703)
T ss_pred ceEEEEcccccccc---cccccc-----ccceeeeecCccceEEe---cccCceEEEecchhhhhheeeecccccCCCcc
Confidence 78999999998842 322221 00022334445555544 3467889999887611111 111221221
Q ss_pred c-----eeeeEEeeCCE-EEEEEcCCeEEEEeCCCCe
Q 036281 313 T-----YQPLGFWRKDE-FLLESSDKRVILYDSRYHE 343 (371)
Q Consensus 313 ~-----~~~~~~~~~~~-il~~~~~~~l~~yd~~~~~ 343 (371)
. ...+.+.++|- +=+-...+.+++||+++.+
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 1 22344444453 3333567889999998775
No 90
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=43.12 E-value=22 Score=22.13 Aligned_cols=21 Identities=10% Similarity=0.378 Sum_probs=17.1
Q ss_pred CCceEEEeccccccccCCCCCC
Q 036281 122 HTLINLWNVSLNEYRGLPECRP 143 (371)
Q Consensus 122 ~~~~~V~NP~T~~~~~LP~~~~ 143 (371)
+.+ +++||.|++|.+++..|.
T Consensus 19 nd~-~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 19 NDV-WVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred cCE-EEEECCCCEEEECCCCCC
Confidence 456 999999999999966554
No 91
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=42.56 E-value=3.6e+02 Score=26.88 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=60.2
Q ss_pred cceEEECceEEEEEecCCCCcEEEEEECCC--ceEEE-eCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEE
Q 036281 216 IYNVYLNGYCYWVVCRPDYSKAILAFSMSN--EVFQE-IKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFE 292 (371)
Q Consensus 216 ~~~v~~~G~lywl~~~~~~~~~Il~fD~~~--e~~~~-i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~ 292 (371)
..++..+|.+|.....+ .|.++|..+ +.|+. ...|........ .......+...+|++.+... .. .
T Consensus 63 stPvv~~g~vyv~s~~g----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~--~~~~~rg~av~~~~v~v~t~---dg--~ 131 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS----RVYALDAKTGKELWKYDPKLPDDVIPVMC--CDVVNRGVALYDGKVFFGTL---DA--R 131 (527)
T ss_pred cCCEEECCEEEEECCCC----cEEEEECCCCceeeEecCCCCcccccccc--cccccccceEECCEEEEEcC---CC--E
Confidence 46788999999876554 799999986 45654 233322110000 00000112334566555331 11 3
Q ss_pred EEEeeC----CceeEEEEecCCC--cc-eeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEEE
Q 036281 293 LWIMKG----GFWIKHLTFGPFI--ET-YQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRDL 347 (371)
Q Consensus 293 iW~L~~----~~W~~~~~i~~~~--~~-~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v 347 (371)
|..|+- ..|..... ++.. .+ ..|+.. ++.+++... ++.++.||.+|++..+-
T Consensus 132 l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 444443 34544321 1111 11 234332 566666532 46899999999987665
No 92
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=40.90 E-value=3e+02 Score=25.55 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=49.2
Q ss_pred EeCCeEEEEecCCCCCEEEEEEeeC--CceeEEEEecCCC-cc-----eeeeEEeeCCEEEEEEcCC----eEEEEeCCC
Q 036281 274 TYDDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFGPFI-ET-----YQPLGFWRKDEFLLESSDK----RVILYDSRY 341 (371)
Q Consensus 274 ~~~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~~~~-~~-----~~~~~~~~~~~il~~~~~~----~l~~yd~~~ 341 (371)
--+|+++++.+ .-..++.+|..+. ..-..+.+|+..+ ++ ..-+.+..||++|..+..+ .++.-|..+
T Consensus 199 Hpn~k~aY~v~-EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 199 HPNGKYAYLVN-ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred cCCCcEEEEEe-ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 46788888554 4567899999987 5555666665332 22 3346667789988886432 355556677
Q ss_pred CeEEEEEEe
Q 036281 342 HEMRDLGIT 350 (371)
Q Consensus 342 ~~~~~v~~~ 350 (371)
++++-+...
T Consensus 278 g~L~~~~~~ 286 (346)
T COG2706 278 GKLELVGIT 286 (346)
T ss_pred CEEEEEEEe
Confidence 777766553
No 93
>PF13013 F-box-like_2: F-box-like domain
Probab=40.59 E-value=8.3 Score=29.25 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=23.4
Q ss_pred cCCCCCHHHHHHHHhcCCccccceeeeccc
Q 036281 9 TLGDLSDDMMIETLSRLPVKSLMRFKCVCI 38 (371)
Q Consensus 9 ~~~~LP~dll~~IL~rLP~ksl~r~r~VcK 38 (371)
.+.+||+||+..|+..-....+...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 367899999999999998887755444444
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=40.11 E-value=3.5e+02 Score=26.02 Aligned_cols=124 Identities=9% Similarity=0.171 Sum_probs=66.8
Q ss_pred cceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCc-eEEEeCCCCCCCCCcccc
Q 036281 186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNE-VFQEIKGPSVPQTTTYYQ 264 (371)
Q Consensus 186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e-~~~~i~~P~~~~~~~~~~ 264 (371)
...+.||++.... .+.. +|.....-..+.+.-.=|||+... +...|..+|++.. -|..++++.....
T Consensus 368 d~~vkiwdlks~~--~~a~----Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~~l~~~~~v----- 435 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAK----FPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTIQLDEKKEV----- 435 (506)
T ss_pred CceEEEEEcCCcc--cccc----CCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhcccceeeccccccc-----
Confidence 4455666666554 3332 232211224455555559998654 2345999999874 5677777765322
Q ss_pred cCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEE
Q 036281 265 SVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLES 329 (371)
Q Consensus 265 ~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~ 329 (371)
........|+.-... ...+.|..-+. .+|.+.-......++..-+.+.+...++...
T Consensus 436 ----~s~~fD~SGt~L~~~----g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 436 ----NSLSFDQSGTYLGIA----GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred ----eeEEEcCCCCeEEee----cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeec
Confidence 111222333333322 46677777765 7899877665444444444444444444443
No 95
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=39.85 E-value=2.9e+02 Score=25.08 Aligned_cols=117 Identities=9% Similarity=0.070 Sum_probs=61.7
Q ss_pred CceEEEEEecCCCCcEEEEEECC--CceEEEe---C-CCCCCCCCcccccCCCcceEE-EeCCeEEEEecCCCCCEEEEE
Q 036281 222 NGYCYWVVCRPDYSKAILAFSMS--NEVFQEI---K-GPSVPQTTTYYQSVKTPWMLG-TYDDCLSLLYSDKFAHSFELW 294 (371)
Q Consensus 222 ~G~lywl~~~~~~~~~Il~fD~~--~e~~~~i---~-~P~~~~~~~~~~~~~~~~~L~-~~~g~L~l~~~~~~~~~~~iW 294 (371)
+|...+.+... ...|..||+. +.++..+ . .|..... ......+. .-+|+..++.. .....+.+|
T Consensus 185 dg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~i~~~pdg~~lyv~~-~~~~~I~v~ 255 (330)
T PRK11028 185 NQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFSD------TRWAADIHITPDGRHLYACD-RTASLISVF 255 (330)
T ss_pred CCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCCC------CccceeEEECCCCCEEEEec-CCCCeEEEE
Confidence 45544444432 3578888876 3344332 2 2432211 00111122 24566544442 467899999
Q ss_pred EeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEE--cCCeEEEEeC--CCCeEEEEE
Q 036281 295 IMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLES--SDKRVILYDS--RYHEMRDLG 348 (371)
Q Consensus 295 ~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~--~~~~l~~yd~--~~~~~~~v~ 348 (371)
-++. ..+.....+.... ..+-+.+.++|+.++.. .++.+.+|+. +++.++.++
T Consensus 256 ~i~~~~~~~~~~~~~~~~~-~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 256 SVSEDGSVLSFEGHQPTET-QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred EEeCCCCeEEEeEEEeccc-cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 9875 4555555553211 22335666788766653 3566777755 567777664
No 96
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=39.79 E-value=18 Score=33.17 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=31.4
Q ss_pred cCCCCCHHHHHHHHhcCC--------ccccceeeecccchhhhcCC
Q 036281 9 TLGDLSDDMMIETLSRLP--------VKSLMRFKCVCISWCDLVKD 46 (371)
Q Consensus 9 ~~~~LP~dll~~IL~rLP--------~ksl~r~r~VcK~W~~li~~ 46 (371)
.++.||.+++.+|+.|.. -++++.+..|||.|+....+
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 456899999999999886 23688999999999987654
No 97
>PLN02772 guanylate kinase
Probab=39.48 E-value=2.8e+02 Score=26.44 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=48.0
Q ss_pred ceEEEeCCeEEEEecCCCC--CEEEEEEeeC--CceeEEEEec--CCCcceeeeEEeeCCEEEEEEc----CCeEEEEeC
Q 036281 270 WMLGTYDDCLSLLYSDKFA--HSFELWIMKG--GFWIKHLTFG--PFIETYQPLGFWRKDEFLLESS----DKRVILYDS 339 (371)
Q Consensus 270 ~~L~~~~g~L~l~~~~~~~--~~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~----~~~l~~yd~ 339 (371)
-..++.+++++++....+. .+..+|+++- ..|+.--..+ |.++-.+..++.++++||+..+ +..+.+..+
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~ 107 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEV 107 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEc
Confidence 3466789999998742222 5789999998 7898865554 4443455566667778877753 334555555
Q ss_pred CCC
Q 036281 340 RYH 342 (371)
Q Consensus 340 ~~~ 342 (371)
.|.
T Consensus 108 ~t~ 110 (398)
T PLN02772 108 DTP 110 (398)
T ss_pred CCH
Confidence 544
No 98
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=38.33 E-value=1e+02 Score=23.73 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=30.9
Q ss_pred eeCCEEEEEE-----cCCeEEEEeCCCCeEEEEEEe--cce---eEE-EEeEeeeeec
Q 036281 320 WRKDEFLLES-----SDKRVILYDSRYHEMRDLGIT--GLW---FSV-HILKESLIRM 366 (371)
Q Consensus 320 ~~~~~il~~~-----~~~~l~~yd~~~~~~~~v~~~--~~~---~~~-~~y~~Sl~~~ 366 (371)
.-||-++... ....++.||+++.+++.+..+ ... ... ..|..+|..+
T Consensus 3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v 60 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALV 60 (129)
T ss_pred EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEE
Confidence 3467765542 246799999999999999886 111 112 6666666654
No 99
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=36.98 E-value=65 Score=24.99 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=21.1
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEEEecc
Q 036281 325 FLLESSDKRVILYDSRYHEMRDLGITGL 352 (371)
Q Consensus 325 il~~~~~~~l~~yd~~~~~~~~v~~~~~ 352 (371)
|+.....-.++-||.++++|++.++.|.
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~~iEG~ 49 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKTDIEGT 49 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeecCcEee
Confidence 4444444567788899999999999874
No 100
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.94 E-value=4e+02 Score=25.85 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=80.3
Q ss_pred cceEEEEEcCCCceee-cCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCceE-EEe---CCCCCCCCC
Q 036281 186 FSHVAVYNFSTNSWRD-LKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVF-QEI---KGPSVPQTT 260 (371)
Q Consensus 186 ~~~~~vy~~~~~~Wr~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~-~~i---~~P~~~~~~ 260 (371)
...+++|++.+.+=+. ...+. - ....-.+..+|.|-..... .-.|-.||+.+... +.+ +.|-.
T Consensus 47 S~rvqly~~~~~~~~k~~srFk----~-~v~s~~fR~DG~LlaaGD~---sG~V~vfD~k~r~iLR~~~ah~apv~---- 114 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFK----D-VVYSVDFRSDGRLLAAGDE---SGHVKVFDMKSRVILRQLYAHQAPVH---- 114 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhc----c-ceeEEEeecCCeEEEccCC---cCcEEEeccccHHHHHHHhhccCcee----
Confidence 6789999998854322 22110 0 0011224455887654432 35788999665322 112 12221
Q ss_pred cccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEee-CCEEEEEE-cCCeEEEEe
Q 036281 261 TYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWR-KDEFLLES-SDKRVILYD 338 (371)
Q Consensus 261 ~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~-~~~il~~~-~~~~l~~yd 338 (371)
.......++.+.+.+ .++....+|.+.... . ...+.-+.++.+-..+.. ++-|++.. .++.+-.||
T Consensus 115 --------~~~f~~~d~t~l~s~--sDd~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 115 --------VTKFSPQDNTMLVSG--SDDKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred --------EEEecccCCeEEEec--CCCceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 222333556665555 578899999998722 2 445555556666665554 45577764 478899999
Q ss_pred CCCCeEEEEEEe
Q 036281 339 SRYHEMRDLGIT 350 (371)
Q Consensus 339 ~~~~~~~~v~~~ 350 (371)
.++..-+.+.++
T Consensus 183 tR~~~~~v~eln 194 (487)
T KOG0310|consen 183 TRSLTSRVVELN 194 (487)
T ss_pred eccCCceeEEec
Confidence 999873444443
No 101
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.53 E-value=2.1e+02 Score=29.48 Aligned_cols=108 Identities=19% Similarity=0.332 Sum_probs=63.2
Q ss_pred eecceEEEee-cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceE
Q 036281 111 PYDGIFCLLK-SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHV 189 (371)
Q Consensus 111 s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 189 (371)
|-|++||-+. ++++ -+|.|-.+++..+ |.... ......|+|..+.|.|-.-. ...+
T Consensus 378 SKn~fLLSSSMDKTV-RLWh~~~~~CL~~---------F~Hnd-fVTcVaFnPvDDryFiSGSL------------D~Kv 434 (712)
T KOG0283|consen 378 SKNNFLLSSSMDKTV-RLWHPGRKECLKV---------FSHND-FVTCVAFNPVDDRYFISGSL------------DGKV 434 (712)
T ss_pred ccCCeeEeccccccE-EeecCCCcceeeE---------EecCC-eeEEEEecccCCCcEeeccc------------ccce
Confidence 6688887666 5666 9999998887755 22211 23556788999999765432 3456
Q ss_pred EEEEcCCC---ceeecCccccccceeccccceE--EECceEEEEEecCCCCcEEEEEEC
Q 036281 190 AVYNFSTN---SWRDLKGFEMRFDYMVDRIYNV--YLNGYCYWVVCRPDYSKAILAFSM 243 (371)
Q Consensus 190 ~vy~~~~~---~Wr~~~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~Il~fD~ 243 (371)
.|.+.... -|..+......+.+......+| .++|.+++....+ ...+..+++
T Consensus 435 RiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~--lk~~~~~~I 491 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG--LKLVSDFHI 491 (712)
T ss_pred EEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccC--CeEEEeeeE
Confidence 66666664 4877764322223322222222 4567777766555 344445544
No 102
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.18 E-value=3.2e+02 Score=25.60 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=45.2
Q ss_pred CeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEE-cCCeEEEEeCCCCeEEEE
Q 036281 277 DCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLES-SDKRVILYDSRYHEMRDL 347 (371)
Q Consensus 277 g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~~~~~~~v 347 (371)
|..+... ..+..|.+|-+.-. ..++++.-+..-.+.+++..+|+.++.. .++.|-+||+++++..+.
T Consensus 304 ~~~l~s~--SrDktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 304 GQVLGSG--SRDKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred ccEEEee--cccceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 3444433 46788999988642 3345554444445667777889988764 577899999999986544
No 103
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=35.48 E-value=3e+02 Score=23.95 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=62.9
Q ss_pred CceEEEEEecCCCCcEEEEEECCCceE-EEeCC--CCCCCCCcccccCCCcceEE-EeCCeEEEEecCCCCCEEEEEEee
Q 036281 222 NGYCYWVVCRPDYSKAILAFSMSNEVF-QEIKG--PSVPQTTTYYQSVKTPWMLG-TYDDCLSLLYSDKFAHSFELWIMK 297 (371)
Q Consensus 222 ~G~lywl~~~~~~~~~Il~fD~~~e~~-~~i~~--P~~~~~~~~~~~~~~~~~L~-~~~g~L~l~~~~~~~~~~~iW~L~ 297 (371)
+|...+..... ...|..+|+++.+. ..+.. |..... .. ....+. .-+|+..++.. .....+.+|-++
T Consensus 167 dg~~l~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~---~~---~~~~i~~s~dg~~~~~~~-~~~~~i~v~d~~ 237 (300)
T TIGR03866 167 DGKELWVSSEI--GGTVSVIDVATRKVIKKITFEIPGVHPE---AV---QPVGIKLTKDGKTAFVAL-GPANRVAVVDAK 237 (300)
T ss_pred CCCEEEEEcCC--CCEEEEEEcCcceeeeeeeecccccccc---cC---CccceEECCCCCEEEEEc-CCCCeEEEEECC
Confidence 45544444321 24688899987654 33332 111000 00 111222 34565544332 234578888764
Q ss_pred CCceeEEEEecCCCcceeeeEEeeCCEEEEEE--cCCeEEEEeCCCCeE-EEEEEecce
Q 036281 298 GGFWIKHLTFGPFIETYQPLGFWRKDEFLLES--SDKRVILYDSRYHEM-RDLGITGLW 353 (371)
Q Consensus 298 ~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~--~~~~l~~yd~~~~~~-~~v~~~~~~ 353 (371)
.|.....+.. ......+.+.++|+.++.. .++.+.+||+++.+. +.+.+.+.+
T Consensus 238 --~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 238 --TYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred --CCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 3554433321 1123345666777766653 467899999999984 777665444
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=35.14 E-value=5.7e+02 Score=27.09 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCCEEEEEEeeC----CceeEEEEecCC--CcceeeeEEee-CCEEEEEEcCCeEEEEeCCCCeE
Q 036281 287 FAHSFELWIMKG----GFWIKHLTFGPF--IETYQPLGFWR-KDEFLLESSDKRVILYDSRYHEM 344 (371)
Q Consensus 287 ~~~~~~iW~L~~----~~W~~~~~i~~~--~~~~~~~~~~~-~~~il~~~~~~~l~~yd~~~~~~ 344 (371)
....+.||-+++ ..|..+..-.-. ..++.-++.++ +|.+++...++.+.+|+.++...
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 467889999988 445444322111 12333344444 47788877777788888765543
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.91 E-value=67 Score=28.24 Aligned_cols=78 Identities=10% Similarity=0.228 Sum_probs=46.0
Q ss_pred CCCCEEEEEEeeCCceeEEEEecCCCcceeee--------------EEeeCCEEEEEEcCCeEEEEeCCCCeEEEEEEec
Q 036281 286 KFAHSFELWIMKGGFWIKHLTFGPFIETYQPL--------------GFWRKDEFLLESSDKRVILYDSRYHEMRDLGITG 351 (371)
Q Consensus 286 ~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~--------------~~~~~~~il~~~~~~~l~~yd~~~~~~~~v~~~~ 351 (371)
..++.+.||..++.+|.+..++.-+.+..+-+ .+.+||.+++-.. +.+...|+.--++.
T Consensus 182 GcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~-------~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 182 GCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK-------DEEYEPWKKTLLEE 254 (299)
T ss_pred CCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe-------cCccCccccccccc
Confidence 45788999999988898888766444333222 2333444443332 22445565544443
Q ss_pred c---eeEE-EEeEeeeeecCCCC
Q 036281 352 L---WFSV-HILKESLIRMKDED 370 (371)
Q Consensus 352 ~---~~~~-~~y~~Sl~~~~~~~ 370 (371)
. -+.. +.+..+++.+.+||
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~Gd 277 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGD 277 (299)
T ss_pred CCcceEEEEEeccccEEEEecCC
Confidence 2 2344 77788888887765
No 106
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=32.95 E-value=4.9e+02 Score=25.64 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=35.3
Q ss_pred CCCCEEEEEEeeC-CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCeEEEEEEec
Q 036281 286 KFAHSFELWIMKG-GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITG 351 (371)
Q Consensus 286 ~~~~~~~iW~L~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~~~v~~~~ 351 (371)
.....+.||- +. -.|++... +|- .-.+++..|.+.+-...+..++.|.+++.+-.+...+
T Consensus 387 gqdk~v~lW~-~~k~~wt~~~~-d~~----~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~ 447 (626)
T KOG2106|consen 387 GQDKHVRLWN-DHKLEWTKIIE-DPA----ECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDN 447 (626)
T ss_pred cCcceEEEcc-CCceeEEEEec-Cce----eEeeccCcceEEEeeccceEEEEecccceeEEEEecC
Confidence 4567788888 33 67877653 222 2234445554444455667777777777665554443
No 107
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=32.41 E-value=2.8e+02 Score=23.42 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=32.5
Q ss_pred EEEEeeC--CceeEEEEecCCCcceee-eEEeeCC-EEEEE--------EcCCeEEEEeCCCCeEEEEEE
Q 036281 292 ELWIMKG--GFWIKHLTFGPFIETYQP-LGFWRKD-EFLLE--------SSDKRVILYDSRYHEMRDLGI 349 (371)
Q Consensus 292 ~iW~L~~--~~W~~~~~i~~~~~~~~~-~~~~~~~-~il~~--------~~~~~l~~yd~~~~~~~~v~~ 349 (371)
.||+.+. ..|.. ..|++...-+.| ...|-|+ .|++. +.++.|+.||+.|+++..+.-
T Consensus 89 kIYIkn~~~~~~~~-L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 89 KIYIKNLNNNNWWS-LQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred eEEEEecCCCceEE-EEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 5566654 45522 234444323444 2335443 45443 236789999999999988844
No 108
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=31.50 E-value=1e+02 Score=17.40 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=23.8
Q ss_pred eeEEEEecCCCcceeeeEEeeCCEEEEE-EcCCeEEEEe
Q 036281 301 WIKHLTFGPFIETYQPLGFWRKDEFLLE-SSDKRVILYD 338 (371)
Q Consensus 301 W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd 338 (371)
|..+..+..+.....-+.+.+++..++. ..++.+.+||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5556666555444555666666666665 5567788876
No 109
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=30.62 E-value=3.8e+02 Score=23.64 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=72.2
Q ss_pred cceEEEEEcCCC----ceeecCcccccccee-ccccceEEECceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCC
Q 036281 186 FSHVAVYNFSTN----SWRDLKGFEMRFDYM-VDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTT 260 (371)
Q Consensus 186 ~~~~~vy~~~~~----~Wr~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~ 260 (371)
...+.+++..|+ +||.-.. +...- +...++|.+.|.+ ...|-++|-++..+..|+.-....+
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~a---qVNtV~fNeesSVv~Sgsf---------D~s~r~wDCRS~s~ePiQildea~D- 146 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLA---QVNTVRFNEESSVVASGSF---------DSSVRLWDCRSRSFEPIQILDEAKD- 146 (307)
T ss_pred CceEEEEEcccCeeeeecccccc---eeeEEEecCcceEEEeccc---------cceeEEEEcccCCCCccchhhhhcC-
Confidence 456788888875 5765532 22221 2244556666654 3478899999999988876554433
Q ss_pred cccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceee---eEEeeCCEEEEEE-cCCeEEE
Q 036281 261 TYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQP---LGFWRKDEFLLES-SDKRVIL 336 (371)
Q Consensus 261 ~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~---~~~~~~~~il~~~-~~~~l~~ 336 (371)
...-+...+...+.. ..+.++..+-+.... + ....+..| +.+.+++...+.. -+..+-+
T Consensus 147 --------~V~Si~v~~heIvaG--S~DGtvRtydiR~G~------l-~sDy~g~pit~vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 147 --------GVSSIDVAEHEIVAG--SVDGTVRTYDIRKGT------L-SSDYFGHPITSVSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred --------ceeEEEecccEEEee--ccCCcEEEEEeecce------e-ehhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence 223334455555544 344555554443310 0 01112333 4556677766654 3566777
Q ss_pred EeCCCCeE
Q 036281 337 YDSRYHEM 344 (371)
Q Consensus 337 yd~~~~~~ 344 (371)
.|-+|+++
T Consensus 210 lDk~tGkl 217 (307)
T KOG0316|consen 210 LDKETGKL 217 (307)
T ss_pred cccchhHH
Confidence 78777765
No 110
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=30.46 E-value=2.4e+02 Score=28.48 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=54.4
Q ss_pred cEEEEEECCCceEE----EeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEE-EecCC
Q 036281 236 KAILAFSMSNEVFQ----EIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHL-TFGPF 310 (371)
Q Consensus 236 ~~Il~fD~~~e~~~----~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~-~i~~~ 310 (371)
..|.-||..+-.|+ .+..|..-. ...+.+.-..|..+++.. ..+..+..|-++...=.-.. -+ -+
T Consensus 74 G~i~l~dt~~~~fr~ee~~lk~~~aH~--------nAifDl~wapge~~lVsa-sGDsT~r~Wdvk~s~l~G~~~~~-GH 143 (720)
T KOG0321|consen 74 GGIILFDTKSIVFRLEERQLKKPLAHK--------NAIFDLKWAPGESLLVSA-SGDSTIRPWDVKTSRLVGGRLNL-GH 143 (720)
T ss_pred Cceeeecchhhhcchhhhhhccccccc--------ceeEeeccCCCceeEEEc-cCCceeeeeeeccceeecceeec-cc
Confidence 38999999988887 122232211 134455556688888775 67899999999972111110 01 11
Q ss_pred CcceeeeEEeeCCEEEEEE--cCCeEEEEeCCCCe
Q 036281 311 IETYQPLGFWRKDEFLLES--SDKRVILYDSRYHE 343 (371)
Q Consensus 311 ~~~~~~~~~~~~~~il~~~--~~~~l~~yd~~~~~ 343 (371)
.+-..-.|+...+..+|+. .++.++++|.+-+.
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 1112223444444444442 35667777776655
No 111
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=29.27 E-value=4.1e+02 Score=23.57 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred CCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeC--------CceeEEEEec----CCCcceeeeEEe
Q 036281 253 GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKG--------GFWIKHLTFG----PFIETYQPLGFW 320 (371)
Q Consensus 253 ~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~--------~~W~~~~~i~----~~~~~~~~~~~~ 320 (371)
.|....+ ....-+...+.+-+.+ ....+.=|.-.+ ..|....-.. +.+.|-...-.-
T Consensus 56 v~eqahd--------gpiy~~~f~d~~Lls~---gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 56 VPEQAHD--------GPIYYLAFHDDFLLSG---GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred eeccccC--------CCeeeeeeehhheeec---cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc
Q ss_pred eCCEEEEEEcCCeEEEEeCCCCeEEEEEEecceeEE--EEeEeeeee
Q 036281 321 RKDEFLLESSDKRVILYDSRYHEMRDLGITGLWFSV--HILKESLIR 365 (371)
Q Consensus 321 ~~~~il~~~~~~~l~~yd~~~~~~~~v~~~~~~~~~--~~y~~Sl~~ 365 (371)
..+.|++...+..++..|+|++++++. +. ..|+-|++.
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~-------~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQRE-------YRGHTDYVHSVVG 164 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEE-------EcCCcceeeeeee
No 112
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=27.33 E-value=4.8e+02 Score=26.56 Aligned_cols=111 Identities=11% Similarity=0.231 Sum_probs=0.0
Q ss_pred EECceEEEEEecCCCCcEEEEEECCCceEEEeCC--CCCCCCCcccccCCCcceEEE--eCCeEEEEecCCCCCEEEEEE
Q 036281 220 YLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKG--PSVPQTTTYYQSVKTPWMLGT--YDDCLSLLYSDKFAHSFELWI 295 (371)
Q Consensus 220 ~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~--P~~~~~~~~~~~~~~~~~L~~--~~g~L~l~~~~~~~~~~~iW~ 295 (371)
..++..-.++..+ ...+..|+++++++..+.- |..... ...+++. .++-+|++. ....+.+|-
T Consensus 437 tid~~k~~~~s~~--~~~le~~el~~ps~kel~~~~~~~~~~--------~I~~l~~SsdG~yiaa~~---t~g~I~v~n 503 (691)
T KOG2048|consen 437 TIDKNKLFLVSKN--IFSLEEFELETPSFKELKSIQSQAKCP--------SISRLVVSSDGNYIAAIS---TRGQIFVYN 503 (691)
T ss_pred EecCceEEEEecc--cceeEEEEecCcchhhhhccccccCCC--------cceeEEEcCCCCEEEEEe---ccceEEEEE
Q ss_pred eeC--CceeE-EEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCeEEE
Q 036281 296 MKG--GFWIK-HLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRD 346 (371)
Q Consensus 296 L~~--~~W~~-~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~~~ 346 (371)
|+. ..|.+ ...+........|.. .+.+++...+++++-||++.+++.+
T Consensus 504 l~~~~~~~l~~rln~~vTa~~~~~~~---~~~lvvats~nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 504 LETLESHLLKVRLNIDVTAAAFSPFV---RNRLVVATSNNQVFEFDIEARNLTR 554 (691)
T ss_pred cccceeecchhccCcceeeeeccccc---cCcEEEEecCCeEEEEecchhhhhh
No 113
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=27.03 E-value=6.1e+02 Score=24.86 Aligned_cols=140 Identities=9% Similarity=0.013 Sum_probs=74.6
Q ss_pred ceEEEEEcCCCceeecCcccccccee--------c--c--ccceEEECceEEEEEecCCCCcEEEEEECCCceEEEeCCC
Q 036281 187 SHVAVYNFSTNSWRDLKGFEMRFDYM--------V--D--RIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGP 254 (371)
Q Consensus 187 ~~~~vy~~~~~~Wr~~~~~~~~~~~~--------~--~--~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P 254 (371)
-.+.+|+..+.+=+.++ + .+|.. . . ...=..++|-.+-+..++ ....++....-- |+++
T Consensus 287 GdIylydP~td~lekld-I--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG----kaFi~~~~~~~~--iqv~ 357 (668)
T COG4946 287 GDIYLYDPETDSLEKLD-I--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG----KAFIMRPWDGYS--IQVG 357 (668)
T ss_pred CcEEEeCCCcCcceeee-c--CCccccccccccccCHHHhhhhhccCCCcEEEEEecC----cEEEECCCCCee--EEcC
Confidence 34567777777666554 2 11211 0 0 111256778888888776 455555444322 3344
Q ss_pred CCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCE-EEEEEcCCe
Q 036281 255 SVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDE-FLLESSDKR 333 (371)
Q Consensus 255 ~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~~~~ 333 (371)
..... +..++......+.+-. .+...+.|.-.+. .++-+|.+.-+....+.+..+|+ +++......
T Consensus 358 ~~~~V--------rY~r~~~~~e~~vigt--~dgD~l~iyd~~~---~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e 424 (668)
T COG4946 358 KKGGV--------RYRRIQVDPEGDVIGT--NDGDKLGIYDKDG---GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFE 424 (668)
T ss_pred CCCce--------EEEEEccCCcceEEec--cCCceEEEEecCC---ceEEEeeCCccceEEEEEcCCCcEEEEEcCceE
Confidence 33322 2233333333333222 3555677766654 12233333222344466677887 455556678
Q ss_pred EEEEeCCCCeEEEEE
Q 036281 334 VILYDSRYHEMRDLG 348 (371)
Q Consensus 334 l~~yd~~~~~~~~v~ 348 (371)
+.++|++++..+.+.
T Consensus 425 l~vididngnv~~id 439 (668)
T COG4946 425 LWVIDIDNGNVRLID 439 (668)
T ss_pred EEEEEecCCCeeEec
Confidence 999999999998873
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.96 E-value=5e+02 Score=23.89 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=50.9
Q ss_pred ccceEEECceEEEEEecCCCCcEEEEEECCCceE-EEeCCCCCCCCCcccccCCCcceEEEeCCeE---EEEecCCCCCE
Q 036281 215 RIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVF-QEIKGPSVPQTTTYYQSVKTPWMLGTYDDCL---SLLYSDKFAHS 290 (371)
Q Consensus 215 ~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~-~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L---~l~~~~~~~~~ 290 (371)
.-.+|.++|- |++..+ ....|-.||+.+..= ..+--+.+. ..-.-..+.+ -|+. ..++..
T Consensus 45 sitavAVs~~--~~aSGs-sDetI~IYDm~k~~qlg~ll~Hags------------itaL~F~~~~S~shLlS-~sdDG~ 108 (362)
T KOG0294|consen 45 SITALAVSGP--YVASGS-SDETIHIYDMRKRKQLGILLSHAGS------------ITALKFYPPLSKSHLLS-GSDDGH 108 (362)
T ss_pred ceeEEEecce--eEeccC-CCCcEEEEeccchhhhcceeccccc------------eEEEEecCCcchhheee-ecCCCc
Confidence 3456777775 333222 246788899877532 222223211 1111122222 2222 256788
Q ss_pred EEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEE
Q 036281 291 FELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLL 327 (371)
Q Consensus 291 ~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~ 327 (371)
|-||-.+ +|..+..+.++..-..-+.+++.|+|-+
T Consensus 109 i~iw~~~--~W~~~~slK~H~~~Vt~lsiHPS~KLAL 143 (362)
T KOG0294|consen 109 IIIWRVG--SWELLKSLKAHKGQVTDLSIHPSGKLAL 143 (362)
T ss_pred EEEEEcC--CeEEeeeecccccccceeEecCCCceEE
Confidence 8999884 6988888877654445555665555544
No 115
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=26.76 E-value=1.7e+02 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=19.4
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE
Q 036281 322 KDEFLLESSDKRVILYDSRYHEMR 345 (371)
Q Consensus 322 ~~~il~~~~~~~l~~yd~~~~~~~ 345 (371)
..+.|+..+..+++++|++++..+
T Consensus 16 kkR~LiLTd~PrL~yvdp~~~~~K 39 (89)
T cd01262 16 KKRQLILTNGPRLIYVDPVKKVVK 39 (89)
T ss_pred ceeeEEEecCceEEEEcCCcCeEE
Confidence 456666677889999999998876
No 116
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=25.69 E-value=6.8e+02 Score=24.95 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=74.5
Q ss_pred CcEEEEEECCCceEE---EeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecC-------CCCCEEEEEEeeCCceeEE
Q 036281 235 SKAILAFSMSNEVFQ---EIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD-------KFAHSFELWIMKGGFWIKH 304 (371)
Q Consensus 235 ~~~Il~fD~~~e~~~---~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~-------~~~~~~~iW~L~~~~W~~~ 304 (371)
.-.|..|+++..+.. ....|....+ .+.+-|.+|.|-++... .....=.|.+|++ .-..+
T Consensus 247 ~T~I~kf~~~~~~~~y~~sg~V~G~lln---------qFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~-~L~~v 316 (521)
T PF09826_consen 247 STTIYKFALDGGKIEYVGSGSVPGYLLN---------QFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDE-DLKIV 316 (521)
T ss_pred ceEEEEEEccCCcEEEEEEEEECcEEcc---------cccEeccCCEEEEEEecCcccccCCCCceEEEEEECC-CCcEe
Confidence 457899999887765 3455665433 46788999999997632 2245566777753 22333
Q ss_pred EEec---CCCcceeeeEEeeCCEEEEE-Ec-CCeEEEEeCCC----CeEEEEEEecceeEEEEeEeeee-ecCC
Q 036281 305 LTFG---PFIETYQPLGFWRKDEFLLE-SS-DKRVILYDSRY----HEMRDLGITGLWFSVHILKESLI-RMKD 368 (371)
Q Consensus 305 ~~i~---~~~~~~~~~~~~~~~~il~~-~~-~~~l~~yd~~~----~~~~~v~~~~~~~~~~~y~~Sl~-~~~~ 368 (371)
-++. |-..|+..-.+ +++.+++ .+ -+-|++.|+.. +.+.++.|+|...++++|-+.++ -++.
T Consensus 317 G~l~~la~gE~IysvRF~--Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~LlGiG~ 388 (521)
T PF09826_consen 317 GSLEGLAPGERIYSVRFM--GDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENHLLGIGK 388 (521)
T ss_pred EEccccCCCceEEEEEEe--CCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCeEEEEcc
Confidence 3333 22223333333 3455444 33 35599999976 45788888887777788777544 4443
No 117
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=24.42 E-value=7.1e+02 Score=24.76 Aligned_cols=107 Identities=13% Similarity=0.035 Sum_probs=60.8
Q ss_pred CcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcce
Q 036281 235 SKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETY 314 (371)
Q Consensus 235 ~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~ 314 (371)
.-.|+.+++...+.+..-.-. ... ......-.+.++..+....+...+..|..++..=.....-++ ...
T Consensus 79 ~g~v~~ys~~~g~it~~~st~-~h~--------~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~--~~~ 147 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTD-KHY--------GNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK--PLV 147 (541)
T ss_pred CccEEEEEecCCeEEEEEecC-CCC--------CcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC--Ccc
Confidence 347888888777654421111 111 122233345555554433677889999988721111111111 134
Q ss_pred eeeEEeeCCEEEEEEcCCeEEEEeCCCCeEEEEEEeccee
Q 036281 315 QPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGLWF 354 (371)
Q Consensus 315 ~~~~~~~~~~il~~~~~~~l~~yd~~~~~~~~v~~~~~~~ 354 (371)
.-+++.+||++++.- .+.+-+||.+++++-. .+.|...
T Consensus 148 ~sl~is~D~~~l~~a-s~~ik~~~~~~kevv~-~ftgh~s 185 (541)
T KOG4547|consen 148 SSLCISPDGKILLTA-SRQIKVLDIETKEVVI-TFTGHGS 185 (541)
T ss_pred ceEEEcCCCCEEEec-cceEEEEEccCceEEE-EecCCCc
Confidence 557777888888863 5679999999998533 3455543
No 118
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.13 E-value=2.7e+02 Score=29.47 Aligned_cols=72 Identities=18% Similarity=0.312 Sum_probs=43.7
Q ss_pred ceEEEeCCeEEEEecCCCCCEEEEEEeeC-CceeEE-EEecCCCcceeeeEEeeCCEEEEE-EcCCeEEEEeCCCCe
Q 036281 270 WMLGTYDDCLSLLYSDKFAHSFELWIMKG-GFWIKH-LTFGPFIETYQPLGFWRKDEFLLE-SSDKRVILYDSRYHE 343 (371)
Q Consensus 270 ~~L~~~~g~L~l~~~~~~~~~~~iW~L~~-~~W~~~-~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd~~~~~ 343 (371)
..-+..++.|=++....+++.+.+|.|.+ ..|..- ++ -+..-...+-+++.-++++. ++++.+-+||++..+
T Consensus 209 VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcr--gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 209 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCR--GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred cceEEecCCcceEEecCCcceeeEEEeccccceeehhhh--cccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 33445566666655557889999999999 778763 22 11111222233444455554 567778899987665
No 119
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=23.69 E-value=5.5e+02 Score=23.22 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=59.0
Q ss_pred CceEEEEEecCCCCcEEEEEECCCc-eEEE-----eCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEE
Q 036281 222 NGYCYWVVCRPDYSKAILAFSMSNE-VFQE-----IKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWI 295 (371)
Q Consensus 222 ~G~lywl~~~~~~~~~Il~fD~~~e-~~~~-----i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~ 295 (371)
+|..-+.+... ...|..||+.+. .... +..|..... +.. ...-+|+..++.. .....+.+|.
T Consensus 136 ~g~~l~v~~~~--~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p--------~~~-~~~pdg~~lyv~~-~~~~~v~v~~ 203 (330)
T PRK11028 136 DNRTLWVPCLK--EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP--------RHM-VFHPNQQYAYCVN-ELNSSVDVWQ 203 (330)
T ss_pred CCCEEEEeeCC--CCEEEEEEECCCCcccccCCCceecCCCCCC--------ceE-EECCCCCEEEEEe-cCCCEEEEEE
Confidence 56555555443 467999998763 2221 122322111 111 1224555554442 4578999999
Q ss_pred eeC--CceeEEEEecCCC----cceee--eEEeeCCEEEEEE--cCCeEEEEeCCC--CeEEEE
Q 036281 296 MKG--GFWIKHLTFGPFI----ETYQP--LGFWRKDEFLLES--SDKRVILYDSRY--HEMRDL 347 (371)
Q Consensus 296 L~~--~~W~~~~~i~~~~----~~~~~--~~~~~~~~il~~~--~~~~l~~yd~~~--~~~~~v 347 (371)
++. ........+...+ .-..+ +.+.++|+.++.. ..+.+.+||.++ +.++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 985 3454444443211 11222 4456788766654 356788888744 344444
No 120
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=23.03 E-value=39 Score=30.02 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=31.6
Q ss_pred cCCCCCHHHHHHHHhcCC-ccccceeeecccchhhhcCChH
Q 036281 9 TLGDLSDDMMIETLSRLP-VKSLMRFKCVCISWCDLVKDPN 48 (371)
Q Consensus 9 ~~~~LP~dll~~IL~rLP-~ksl~r~r~VcK~W~~li~~p~ 48 (371)
++.+||.+++.+||.||| -.+|.....|--....++.+..
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~ 241 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERR 241 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHH
Confidence 357899999999999999 6788888877666666666544
No 121
>PF15408 PH_7: Pleckstrin homology domain
Probab=22.85 E-value=18 Score=25.78 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=17.9
Q ss_pred ccceeeecccchhhhcCChHHH
Q 036281 29 SLMRFKCVCISWCDLVKDPNFI 50 (371)
Q Consensus 29 sl~r~r~VcK~W~~li~~p~F~ 50 (371)
-.+..+-|||.|-....+|+|.
T Consensus 78 ~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 78 CFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhHHHHHHHHHHHhcChhhh
Confidence 3445566999999999999995
No 122
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.62 E-value=7.1e+02 Score=24.11 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=45.4
Q ss_pred EEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEE-EcCCeEEEEeCCCCeEE
Q 036281 272 LGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLE-SSDKRVILYDSRYHEMR 345 (371)
Q Consensus 272 L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd~~~~~~~ 345 (371)
.....|.+.+.. ..+..+.||.++.. +.+-.+..+..-...+++..+|.+++. ..++.+.+||++++...
T Consensus 253 ~f~p~g~~i~Sg--s~D~tvriWd~~~~--~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 253 AFSPDGNLLVSG--SDDGTVRIWDVRTG--ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred EecCCCCEEEEe--cCCCcEEEEeccCC--eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 334566666655 57899999999851 122233333333444566667776666 45788999999999943
No 123
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=22.52 E-value=5.4e+02 Score=22.68 Aligned_cols=163 Identities=18% Similarity=0.134 Sum_probs=79.6
Q ss_pred cceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCC----ceEEEeCCCCCCCCCc
Q 036281 186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSN----EVFQEIKGPSVPQTTT 261 (371)
Q Consensus 186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~----e~~~~i~~P~~~~~~~ 261 (371)
.....+|+..++++|.+... ....+ +...+.-||.+.-..........+-.|+..+ ..|... |.....
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~---td~FC-Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~--~~~m~~-- 116 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQ---TDTFC-SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTES--PNDMQS-- 116 (243)
T ss_pred eEEEEEEecCCCcEEeccCC---CCCcc-cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceEC--cccccC--
Confidence 45678899999999988532 11111 2334555665543322211344567777654 344432 222111
Q ss_pred ccccCCCcceEEE-eCCeEEEEecCCCCCEEEEEEeeC-----CceeEEEEec-CCCc-ceeeeEEeeCCEEEEEEcCCe
Q 036281 262 YYQSVKTPWMLGT-YDDCLSLLYSDKFAHSFELWIMKG-----GFWIKHLTFG-PFIE-TYQPLGFWRKDEFLLESSDKR 333 (371)
Q Consensus 262 ~~~~~~~~~~L~~-~~g~L~l~~~~~~~~~~~iW~L~~-----~~W~~~~~i~-~~~~-~~~~~~~~~~~~il~~~~~~~ 333 (371)
.+....... -+|++.++.- ......+.|=-+. ..|....... .... .+--+.+..+|+|++.... .
T Consensus 117 ----~RWYpT~~~L~DG~vlIvGG-~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~ 190 (243)
T PF07250_consen 117 ----GRWYPTATTLPDGRVLIVGG-SNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-G 190 (243)
T ss_pred ----CCccccceECCCCCEEEEeC-cCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-C
Confidence 112233333 4788777663 2334455543322 1111111110 1111 2323455679998887654 4
Q ss_pred EEEEeCCCCeE-EEE-EEecceeEE-EEeEeeee
Q 036281 334 VILYDSRYHEM-RDL-GITGLWFSV-HILKESLI 364 (371)
Q Consensus 334 l~~yd~~~~~~-~~v-~~~~~~~~~-~~y~~Sl~ 364 (371)
-.+||.+++++ +.+ .++|. .. ++...|-+
T Consensus 191 s~i~d~~~n~v~~~lP~lPg~--~R~YP~sgssv 222 (243)
T PF07250_consen 191 SIIYDYKTNTVVRTLPDLPGG--PRNYPASGSSV 222 (243)
T ss_pred cEEEeCCCCeEEeeCCCCCCC--ceecCCCcceE
Confidence 77789999976 443 23332 23 55554443
No 124
>PLN00181 protein SPA1-RELATED; Provisional
Probab=22.24 E-value=9.2e+02 Score=25.30 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=39.9
Q ss_pred eCCeEEEEecCCCCCEEEEEEeeC----CceeEEEEecCCCcceeeeEEeeCCEEEEE-EcCCeEEEEeCCCC
Q 036281 275 YDDCLSLLYSDKFAHSFELWIMKG----GFWIKHLTFGPFIETYQPLGFWRKDEFLLE-SSDKRVILYDSRYH 342 (371)
Q Consensus 275 ~~g~L~l~~~~~~~~~~~iW~L~~----~~W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd~~~~ 342 (371)
.++...+.. ..+..+.||-+.. ..|.....+..+......+++..++.++.. ..++.+.+||..+.
T Consensus 670 ~~~~~lvs~--s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 670 VDSSTLVSS--STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eCCCEEEEE--ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 355544433 3677899999874 245555555433323334555556665554 46788999997655
No 125
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=20.90 E-value=6.5e+02 Score=23.04 Aligned_cols=61 Identities=15% Similarity=0.353 Sum_probs=38.4
Q ss_pred CCCEEEEEEeeC-CceeEEEEecCCCcceee-eE-Ee-eCC-EEEEEEcCCeEEEEeCCCCeEEEEEEec
Q 036281 287 FAHSFELWIMKG-GFWIKHLTFGPFIETYQP-LG-FW-RKD-EFLLESSDKRVILYDSRYHEMRDLGITG 351 (371)
Q Consensus 287 ~~~~~~iW~L~~-~~W~~~~~i~~~~~~~~~-~~-~~-~~~-~il~~~~~~~l~~yd~~~~~~~~v~~~~ 351 (371)
=+..+++|.+++ ..-.-+- ...+..| ++ +| ++| +++....++.+-.||+.+++...|+...
T Consensus 48 WD~tVR~wevq~~g~~~~ka----~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 48 WDGTVRIWEVQNSGQLVPKA----QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred cCCceEEEEEecCCcccchh----hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecc
Confidence 467899999997 1111100 0112233 22 23 455 4555567889999999999999998864
No 126
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=20.84 E-value=1.2e+02 Score=16.89 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=12.3
Q ss_pred CCeEEEEeCCCCeEE
Q 036281 331 DKRVILYDSRYHEMR 345 (371)
Q Consensus 331 ~~~l~~yd~~~~~~~ 345 (371)
.++.++||.+|++-.
T Consensus 13 ~g~~YY~N~~t~~s~ 27 (31)
T PF00397_consen 13 SGRPYYYNHETGESQ 27 (31)
T ss_dssp TSEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCCEE
Confidence 388999999998743
No 127
>PRK10115 protease 2; Provisional
Probab=20.36 E-value=9.7e+02 Score=24.81 Aligned_cols=117 Identities=9% Similarity=-0.024 Sum_probs=64.8
Q ss_pred EEECceEEEEEecCCCCcEEEEEECC-CceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEee
Q 036281 219 VYLNGYCYWVVCRPDYSKAILAFSMS-NEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMK 297 (371)
Q Consensus 219 v~~~G~lywl~~~~~~~~~Il~fD~~-~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~ 297 (371)
...++.+|..+..+.....|+..++. .++|+.+-.+..... -..+...++.|.+... ....-.++++.
T Consensus 276 ~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~---------i~~~~~~~~~l~~~~~--~~g~~~l~~~~ 344 (686)
T PRK10115 276 DHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIM---------LEGFTLFTDWLVVEER--QRGLTSLRQIN 344 (686)
T ss_pred EeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCE---------EEEEEEECCEEEEEEE--eCCEEEEEEEc
Confidence 34456777777654456789999988 577877654422111 1123335788888663 34444566665
Q ss_pred CCcee-EEEEec-CCCcceeeeEEe---eCCEEEEEE----cCCeEEEEeCCCCeEEEEE
Q 036281 298 GGFWI-KHLTFG-PFIETYQPLGFW---RKDEFLLES----SDKRVILYDSRYHEMRDLG 348 (371)
Q Consensus 298 ~~~W~-~~~~i~-~~~~~~~~~~~~---~~~~il~~~----~~~~l~~yd~~~~~~~~v~ 348 (371)
- +. ....+. +.+.....+... .++.+++.. ....++.||+++++++.+.
T Consensus 345 ~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 345 R--KTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred C--CCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 3 11 223333 222121222222 134566653 3568999999998877664
No 128
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=20.34 E-value=8.6e+02 Score=24.18 Aligned_cols=126 Identities=7% Similarity=0.060 Sum_probs=69.3
Q ss_pred CCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc-ccccceeccccceEEECceEEEEEec------CC--
Q 036281 163 VTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF-EMRFDYMVDRIYNVYLNGYCYWVVCR------PD-- 233 (371)
Q Consensus 163 ~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~-~~~~~~~~~~~~~v~~~G~lywl~~~------~~-- 233 (371)
.++.-|.|......... .-.+...+++|-+|.....- .+++|... .+++..+.++|.+..- +.
T Consensus 212 Ds~~skmvvyGGM~G~R------LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSL--Hsa~~IGnKMyvfGGWVPl~~~~~~~ 283 (830)
T KOG4152|consen 212 DSKKSKMVVYGGMSGCR------LGDLWTLDLDTLTWNKPSLSGVAPLPRSL--HSATTIGNKMYVFGGWVPLVMDDVKV 283 (830)
T ss_pred cCCcceEEEEccccccc------ccceeEEecceeecccccccCCCCCCccc--ccceeecceeEEecceeeeecccccc
Confidence 34455666554433222 44578889999999987522 13455542 3567777777755421 10
Q ss_pred --------CCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecC--------CCCCEEEEEEee
Q 036281 234 --------YSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD--------KFAHSFELWIMK 297 (371)
Q Consensus 234 --------~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~--------~~~~~~~iW~L~ 297 (371)
....+-++|+.+..|..+-+=..-++.-. ..+...+-+..+.+|++..-+ +.-..-++|.|+
T Consensus 284 ~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiP--R~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLd 361 (830)
T KOG4152|consen 284 ATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIP--RARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLD 361 (830)
T ss_pred ccccceeeeccceeeeeecchheeeeeeccccccccc--cccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhc
Confidence 34678999999999987643211111000 001123445578888885521 122345778887
Q ss_pred C
Q 036281 298 G 298 (371)
Q Consensus 298 ~ 298 (371)
-
T Consensus 362 T 362 (830)
T KOG4152|consen 362 T 362 (830)
T ss_pred c
Confidence 4
Done!