BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036284
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 121/246 (49%), Gaps = 16/246 (6%)
Query: 33 LDNFFEDVENVKAEMKTVEKLYKRLQEAN-EESKIVHNARTMKELRARMDADVQQVLKRV 91
+D FFE VE ++ ++K+ + ++E + S I+ + ++ + ++ + + K
Sbjct: 42 MDEFFEQVEEIRG---FIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTA 98
Query: 92 KIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQY 151
++ KL+++E+S G L +K ++M ++ N Q
Sbjct: 99 NKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEY----NATQS 151
Query: 152 EYKETVE---RRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQE 208
+Y+E + +R +TG+ E +E+++ SG F I + + +SEI+
Sbjct: 152 DYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIET 209
Query: 209 RHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268
RH I ++E ++ ELH +F+DMA LVE+QG ++ IE +V HA +V R ++A +
Sbjct: 210 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 269
Query: 269 QKGSRK 274
Q +R+
Sbjct: 270 QSKARR 275
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 125/247 (50%), Gaps = 16/247 (6%)
Query: 33 LDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVK 92
+ +FF V+ ++ ++ +E+ +++ + + ES + KE R R++ +Q + R+
Sbjct: 43 MADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVA----VSKEDRDRLNEKLQDTMARIS 98
Query: 93 IIKGKLEA----LERSN--AASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFR 146
+ K+ A +E+ N A G L +K +M + + +
Sbjct: 99 ALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQ 158
Query: 147 NKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEI 206
+ + Y E V R+ V +D+ I+ +I G F ++ +G L+ EI
Sbjct: 159 AENKRRYGENVARQCRVVEPSLSDD-AIQKVIEHGTEGIF--SGMRLEGAEAKLN---EI 212
Query: 207 QERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAR 266
++RH I+++E++LLELH++F DM+ LV +QG ++ IE V ++++V++ TEQ+ +AR
Sbjct: 213 RDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQAR 272
Query: 267 ELQKGSR 273
Q+ +R
Sbjct: 273 HYQESAR 279
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 77
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQ 261
+SEI+ RH I ++E ++ ELH +F+DMA LVE+QG ++ IE +V HA +V R
Sbjct: 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 60
Query: 262 LQEARELQKGSRK 274
++A + Q +R+
Sbjct: 61 TKKAVKYQSKARR 73
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 197 GQILDT------ISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAH 250
G I+D+ +SEI+ RH I ++E ++ ELH +F+DMA LVE+QG ++ IE +V H
Sbjct: 1 GIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEH 60
Query: 251 ANSFVRRGTEQLQEARELQKGSR 273
A +V R ++A + Q +R
Sbjct: 61 AVDYVERAVSDTKKAVKYQSKAR 83
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 203 ISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQL 262
+SEI+ RH I ++E ++ ELH +F+DMA LVE+QG ++ IE +V HA +V R
Sbjct: 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDT 72
Query: 263 QEARELQKGSRKWTCYAIIA 282
++A + Q +R+ II
Sbjct: 73 KKAVKYQSKARRKKIMIIIC 92
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQ 261
+SEI+ RH I ++E ++ ELH +F+DMA LVE+QG ++ IE +V HA +V R
Sbjct: 2 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 61
Query: 262 LQEARELQKGSRK 274
++A + Q +R+
Sbjct: 62 TKKAVKYQSKARR 74
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQ 261
+SEI+ RH I ++E ++ ELH +F+DMA LVE+QG ++ IE +V HA +V R
Sbjct: 7 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 66
Query: 262 LQEARELQ 269
++A + Q
Sbjct: 67 TKKAVKYQ 74
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQ 261
+SEI+ RH I ++E ++ ELH +F+DMA LVE+QG ++ IE +V HA +V R
Sbjct: 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 62
Query: 262 LQEA 265
++A
Sbjct: 63 TKKA 66
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 203 ISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGT 259
+SEI+ RH I ++E ++ ELH +F+DMA LVE+QG ++ IE +V HA +V R
Sbjct: 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAV 60
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 62
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGT 259
+SEI+ RH I ++E ++ ELH +F+DMA LVE+QG ++ IE +V HA +V R
Sbjct: 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAV 60
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex
Length = 71
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 209 RHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268
R AI+++E ++L+++Q+F D+A ++ QG ++ IE++V + V R ++QLQ A
Sbjct: 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63
Query: 269 QKGSRK 274
QK SRK
Sbjct: 64 QKKSRK 69
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQ 261
T+++I+ RH I ++E ++ ELH +F+DMA LVE+QG ++ IE +V A ++
Sbjct: 17 TLADIEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAKVD 76
Query: 262 LQEARELQKGSR 273
++A + Q +R
Sbjct: 77 TKKAVKYQSKAR 88
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1
Length = 196
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 138 LMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRG 197
L+ D++ + + E KE +R+Y + + ++E + G + F Q + RG
Sbjct: 96 LIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRG 155
Query: 198 QILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALV 234
+ ++E+Q RH + ++EK++ EL Q+F DM LV
Sbjct: 156 EAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELV 192
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 40/62 (64%)
Query: 204 SEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQ 263
S + ER +I+++E ++++++++F D+ ++ QG ++ IE++V A V++ +QL
Sbjct: 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLS 61
Query: 264 EA 265
A
Sbjct: 62 RA 63
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|F Chain F, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|J Chain J, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 69
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGT 259
++E+Q RH + ++EK++ EL Q+F DM LV Q ++ I+ +V A V +G
Sbjct: 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGV 58
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 254 FVRRGTEQLQEARELQKGSRKWTCYAII 281
+++RG QL +A E SR W CY I+
Sbjct: 81 YLKRGLRQLTDAYECLDASRPWLCYWIL 108
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 254 FVRRGTEQLQEARELQKGSRKWTCYAII 281
+++RG QL +A E SR W CY I+
Sbjct: 84 YLKRGLRQLTDAYECLDASRPWLCYWIL 111
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 254 FVRRGTEQLQEARELQKGSRKWTCYAII 281
+++RG QL +A E SR W CY I+
Sbjct: 81 YLKRGLRQLTDAYECLDASRPWLCYWIL 108
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 254 FVRRGTEQLQEARELQKGSRKWTCYAII 281
+++RG QL +A E SR W CY I+
Sbjct: 81 YLKRGLRQLTDAYECLDASRPWLCYWIL 108
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 254 FVRRGTEQLQEARELQKGSRKWTCYAII 281
+++RG QL +A E SR W CY I+
Sbjct: 59 YLKRGLRQLTDAYECLDASRPWLCYWIL 86
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 254 FVRRGTEQLQEARELQKGSRKWTCYAII 281
+++RG QL +A E SR W CY I+
Sbjct: 60 YLKRGLRQLTDAYECLDASRPWLCYWIL 87
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 254 FVRRGTEQLQEARELQKGSRKWTCYAII 281
+++RG QL +A E SR W CY I+
Sbjct: 81 YLKRGLRQLTDAYECLDASRPWLCYWIL 108
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 254 FVRRGTEQLQEARELQKGSRKWTCYAII 281
+++RG QL +A E SR W CY I+
Sbjct: 60 YLKRGLRQLTDAYECLDASRPWLCYWIL 87
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 254 FVRRGTEQLQEARELQKGSRKWTCYAII 281
+++RG QL +A E SR W CY I+
Sbjct: 80 YLKRGLRQLTDAYECLDASRPWLCYWIL 107
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 254 FVRRGTEQLQEARELQKGSRKWTCYAII 281
+++RG QL +A E SR W CY I+
Sbjct: 60 YLKRGLRQLTDAYECLDASRPWLCYWIL 87
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 140 DDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIAS-GESESFLQKAIQEQGRGQ 198
DD N +M+ + V + V G+KA+E ++ L S E++ L A+Q++G
Sbjct: 130 DDVVNLFKEMEIPFVVVVNK--IDVLGEKAEE--LKGLYESRYEAKVLLVSALQKKGFDD 185
Query: 199 ILDTISEIQERHDAIKE----IEKNLLELHQVFLDMAA----LVEAQGHQL 241
I TISEI + I I+ L + V +D+ A L+ Q H +
Sbjct: 186 IGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAI 236
>pdb|2OCX|A Chain A, Crystal Structure Of Se-Met Fucosyltransferase Nodz From
Bradyrhizobium
Length = 330
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 21 QDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARM 80
+ D + RERD L F+ E+ +A + E I N + E+RAR+
Sbjct: 99 RPDEQIFRERDELTELFQAREDSEANTIVCDACLXWRCSEEAERLIFRNIKLRSEIRARI 158
Query: 81 DA 82
DA
Sbjct: 159 DA 160
>pdb|2HHC|A Chain A, Crystal Structure Of Fucosyltransferase Nodz From
Bradyrhizobium
pdb|2HLH|A Chain A, Crystal Structure Of Fucosyltransferase Nodz From
Bradyrhizobium
pdb|3SIW|A Chain A, Crystal Structure Of Nodz Alpha-1,6-Fucosyltransferase
Co-Crystallized With Gdp
pdb|3SIX|A Chain A, Crystal Structure Of Nodz Alpha-1,6-Fucosyltransferase
Soaked With Gdp-Fucose
Length = 330
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 21 QDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARM 80
+ D + RERD L F+ E+ +A + E I N + E+RAR+
Sbjct: 99 RPDEQIFRERDELTELFQAREDSEANTIVCDACLMWRCSEEAERLIFRNIKLRSEIRARI 158
Query: 81 DA 82
DA
Sbjct: 159 DA 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,142,492
Number of Sequences: 62578
Number of extensions: 260204
Number of successful extensions: 847
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 55
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)