Query 036284
Match_columns 282
No_of_seqs 143 out of 1257
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 11:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810 SNARE protein Syntaxin 100.0 5.1E-54 1.1E-58 385.8 32.1 273 1-282 1-277 (297)
2 COG5074 t-SNARE complex subuni 100.0 1.7E-38 3.6E-43 268.7 25.7 234 35-282 22-258 (280)
3 KOG0809 SNARE protein TLG2/Syn 100.0 1.8E-31 4E-36 233.8 21.9 230 33-281 56-288 (305)
4 KOG0811 SNARE protein PEP12/VA 100.0 5.9E-30 1.3E-34 226.5 25.7 234 30-282 13-251 (269)
5 cd00179 SynN Syntaxin N-termin 99.9 4.2E-22 9.2E-27 164.1 19.3 149 33-188 1-149 (151)
6 COG5325 t-SNARE complex subuni 99.9 2.1E-21 4.5E-26 169.4 23.9 247 8-275 2-259 (283)
7 KOG0812 SNARE protein SED5/Syn 99.7 2.8E-15 6.1E-20 131.5 25.6 243 15-274 22-290 (311)
8 smart00503 SynN Syntaxin N-ter 99.7 5.5E-15 1.2E-19 116.3 16.3 116 32-154 2-117 (117)
9 PF05739 SNARE: SNARE domain; 99.6 3.2E-14 6.9E-19 100.0 9.5 63 208-270 1-63 (63)
10 PF00804 Syntaxin: Syntaxin; 99.5 5.9E-13 1.3E-17 102.0 15.1 103 32-139 1-103 (103)
11 cd00193 t_SNARE Soluble NSF (N 99.4 4.8E-13 1E-17 92.6 7.5 59 207-265 2-60 (60)
12 smart00397 t_SNARE Helical reg 99.3 1.4E-11 3.1E-16 86.6 8.9 64 202-265 3-66 (66)
13 PF14523 Syntaxin_2: Syntaxin- 98.8 2.9E-07 6.2E-12 70.7 13.8 99 43-154 1-99 (102)
14 KOG3202 SNARE protein TLG1/Syn 98.1 0.0021 4.5E-08 56.6 21.5 212 33-280 5-220 (235)
15 KOG3894 SNARE protein Syntaxin 97.8 5.1E-05 1.1E-09 68.4 6.7 82 201-282 222-303 (316)
16 PF00435 Spectrin: Spectrin re 93.0 1.6 3.4E-05 32.0 9.8 93 7-101 11-103 (105)
17 PF00957 Synaptobrevin: Synapt 89.1 1.3 2.9E-05 32.7 5.8 52 211-262 3-54 (89)
18 KOG3065 SNAP-25 (synaptosome-a 87.1 2.9 6.4E-05 37.8 7.6 55 210-264 217-271 (273)
19 KOG3385 V-SNARE [Intracellular 86.9 1.7 3.7E-05 33.9 5.2 68 211-280 36-103 (118)
20 smart00150 SPEC Spectrin repea 82.4 15 0.00032 26.5 8.6 75 8-84 9-83 (101)
21 PF02346 Vac_Fusion: Chordopox 79.8 11 0.00024 25.7 6.3 45 212-256 2-46 (57)
22 KOG0860 Synaptobrevin/VAMP-lik 78.6 6 0.00013 31.0 5.3 59 211-272 29-87 (116)
23 KOG0810 SNARE protein Syntaxin 72.5 79 0.0017 29.0 26.1 70 199-268 201-270 (297)
24 PRK04325 hypothetical protein; 70.7 36 0.00078 24.4 7.8 45 213-257 11-55 (74)
25 PRK00295 hypothetical protein; 69.0 37 0.00081 23.9 7.5 45 213-257 7-51 (68)
26 PF05531 NPV_P10: Nucleopolyhe 66.1 47 0.001 24.0 7.2 49 42-92 8-56 (75)
27 PF04102 SlyX: SlyX; InterPro 65.9 36 0.00078 23.9 6.5 49 211-259 4-52 (69)
28 PF09177 Syntaxin-6_N: Syntaxi 63.0 61 0.0013 24.2 9.9 63 35-107 2-64 (97)
29 PF10267 Tmemb_cc2: Predicted 56.9 1.9E+02 0.004 27.8 14.3 33 30-62 211-243 (395)
30 PHA02675 ORF104 fusion protein 56.1 65 0.0014 23.7 6.3 40 216-255 35-74 (90)
31 PF11598 COMP: Cartilage oligo 55.6 28 0.0006 22.6 4.0 24 215-238 5-28 (45)
32 cd00193 t_SNARE Soluble NSF (N 53.7 59 0.0013 21.1 7.6 56 215-270 3-58 (60)
33 PRK02793 phi X174 lysis protei 52.6 82 0.0018 22.4 7.4 47 211-257 8-54 (72)
34 PF09753 Use1: Membrane fusion 50.0 49 0.0011 29.3 6.2 52 211-265 170-221 (251)
35 PF00804 Syntaxin: Syntaxin; 49.2 37 0.00081 24.8 4.6 62 45-108 7-68 (103)
36 KOG0972 Huntingtin interacting 49.1 2.2E+02 0.0047 26.2 10.4 24 125-148 272-295 (384)
37 PRK00736 hypothetical protein; 48.3 94 0.002 21.8 7.4 45 213-257 7-51 (68)
38 PRK04406 hypothetical protein; 45.6 1.1E+02 0.0024 21.9 7.3 47 211-257 11-57 (75)
39 KOG3065 SNAP-25 (synaptosome-a 45.3 74 0.0016 28.8 6.5 43 224-266 92-134 (273)
40 PRK02119 hypothetical protein; 44.9 1.1E+02 0.0024 21.7 7.6 47 211-257 9-55 (73)
41 PF06657 Cep57_MT_bd: Centroso 44.4 1.2E+02 0.0026 22.0 9.8 64 31-94 10-73 (79)
42 PF12352 V-SNARE_C: Snare regi 43.8 1E+02 0.0022 20.9 8.9 51 217-267 14-64 (66)
43 PHA03395 p10 fibrous body prot 43.8 1.3E+02 0.0029 22.3 6.9 56 42-103 8-63 (87)
44 PF10046 BLOC1_2: Biogenesis o 41.7 20 0.00043 27.1 2.0 19 43-61 40-58 (99)
45 PF11172 DUF2959: Protein of u 41.2 2.1E+02 0.0045 24.7 8.2 18 8-25 97-114 (201)
46 PF03915 AIP3: Actin interacti 39.8 3.6E+02 0.0078 26.1 15.6 121 78-241 209-329 (424)
47 PF07412 Geminin: Geminin; In 39.7 1.3E+02 0.0029 25.9 6.9 66 189-254 110-175 (200)
48 PF05508 Ran-binding: RanGTP-b 39.5 1.7E+02 0.0038 26.9 8.0 68 25-98 71-138 (302)
49 PHA03046 Hypothetical protein; 35.2 2E+02 0.0044 23.0 6.7 44 212-255 85-128 (142)
50 PF03359 GKAP: Guanylate-kinas 34.7 73 0.0016 30.0 5.0 57 4-63 219-275 (357)
51 PF05739 SNARE: SNARE domain; 33.7 1.4E+02 0.0031 19.8 7.3 50 219-268 5-54 (63)
52 PF05597 Phasin: Poly(hydroxya 32.0 2.3E+02 0.005 22.7 6.8 27 65-91 103-129 (132)
53 smart00502 BBC B-Box C-termina 30.9 2.3E+02 0.005 21.2 7.7 66 199-264 19-86 (127)
54 KOG1161 Protein involved in va 30.7 4.4E+02 0.0095 24.4 11.4 97 6-105 16-127 (310)
55 smart00806 AIP3 Actin interact 30.0 5.2E+02 0.011 25.0 20.1 118 77-237 212-329 (426)
56 COG5074 t-SNARE complex subuni 29.7 4.1E+02 0.0088 23.7 21.7 141 128-281 109-261 (280)
57 PRK00846 hypothetical protein; 29.3 2.2E+02 0.0048 20.6 7.4 48 211-258 13-60 (77)
58 smart00397 t_SNARE Helical reg 28.2 1.8E+02 0.0038 19.0 8.9 57 212-268 6-62 (66)
59 PRK14127 cell division protein 28.0 69 0.0015 24.9 3.0 13 30-42 25-37 (109)
60 PF07432 Hc1: Histone H1-like 27.5 2.6E+02 0.0057 21.9 6.0 45 223-267 2-46 (123)
61 COG5185 HEC1 Protein involved 27.1 6.2E+02 0.013 25.0 19.1 52 3-60 235-286 (622)
62 PF09036 Bcr-Abl_Oligo: Bcr-Ab 25.8 1.9E+02 0.0041 20.8 4.6 38 16-59 10-47 (79)
63 PF12022 DUF3510: Domain of un 25.8 2.2E+02 0.0048 22.3 5.7 50 31-80 70-121 (125)
64 PF07544 Med9: RNA polymerase 25.4 1.4E+02 0.0031 21.7 4.2 29 206-234 54-82 (83)
65 cd00179 SynN Syntaxin N-termin 25.4 3.4E+02 0.0074 21.4 10.6 61 44-106 5-65 (151)
66 PF10496 Syntaxin-18_N: SNARE- 25.2 1.9E+02 0.0042 20.8 5.0 34 28-61 33-66 (87)
67 PF07106 TBPIP: Tat binding pr 24.2 4E+02 0.0086 21.8 14.4 70 27-103 68-137 (169)
68 TIGR02302 aProt_lowcomp conser 24.1 8.9E+02 0.019 25.8 11.9 23 222-244 620-642 (851)
69 PF05700 BCAS2: Breast carcino 23.8 4.8E+02 0.01 22.6 14.5 55 3-58 63-124 (221)
70 TIGR00606 rad50 rad50. This fa 23.2 1.1E+03 0.023 26.4 24.6 27 31-57 822-848 (1311)
71 PF06694 Plant_NMP1: Plant nuc 22.1 4.4E+02 0.0095 24.3 7.4 34 29-62 166-199 (325)
72 PF05008 V-SNARE: Vesicle tran 21.8 2.9E+02 0.0063 19.3 8.2 29 207-235 21-49 (79)
73 PF09164 VitD-bind_III: Vitami 21.6 1.2E+02 0.0027 21.2 3.0 27 153-180 14-40 (68)
74 COG5325 t-SNARE complex subuni 21.0 6.4E+02 0.014 22.9 20.2 66 201-266 192-257 (283)
75 PF08700 Vps51: Vps51/Vps67; 20.7 3.2E+02 0.0069 19.3 6.1 39 206-244 46-84 (87)
76 TIGR03185 DNA_S_dndD DNA sulfu 20.3 9.1E+02 0.02 24.5 13.8 39 52-90 402-440 (650)
77 TIGR02492 flgK_ends flagellar 20.2 2.8E+02 0.0061 25.4 6.1 14 4-17 108-121 (322)
78 COG3388 Predicted transcriptio 20.2 2.7E+02 0.0059 21.1 4.7 31 33-63 68-98 (101)
79 KOG0994 Extracellular matrix g 20.1 1.2E+03 0.027 26.0 22.6 228 33-268 1424-1669(1758)
No 1
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-54 Score=385.75 Aligned_cols=273 Identities=41% Similarity=0.651 Sum_probs=242.3
Q ss_pred CCcccchhhhhhhhhhhhcccccc--ccCc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHH
Q 036284 1 MNDLFSNSFKKYTDLKTQAYQDDM--EAGR--ERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKEL 76 (282)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l 76 (282)
|||+++.+|..+...-++.. +. ..|+ .+.+|+.||..|++|+..|..+...+.+|..+|.. .++++...+++
T Consensus 1 M~d~~~~~~~~~~~~~~e~~--~~~~~~~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~--~l~~~~~~~~~ 76 (297)
T KOG0810|consen 1 MNDRLSELLARSVSEDNELD--DVEGHTGSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSK--SLHSPNADKEL 76 (297)
T ss_pred CccccHHHHcCchhhccccc--ccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HhccccccHHH
Confidence 99999999999975444443 32 1111 24679999999999999999999999999999954 46667778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 77 RARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKET 156 (282)
Q Consensus 77 ~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~ 156 (282)
+++|+.++.++.+.++.|+.+|+.+++.+......+ +.++..|++++|+..++++|.++|..|+.+|..|+.+|+++
T Consensus 77 k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~---~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~ 153 (297)
T KOG0810|consen 77 KRKLESLVDEIRRRARKIKTKLKALEKENEADETQN---RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKER 153 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987654222 34556799999999999999999999999999999999999
Q ss_pred HhhhhhhccCCCCCHHHHHHHHhcCCchHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 157 VERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEA 236 (282)
Q Consensus 157 ~~r~~~~i~~~~~sdeeie~~~e~~~~~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~ 236 (282)
++|+|.++.|..++|++++.++++|+++.|++.++. ++++++.+|.++++||.+|.+||++|.|||+||.|||+||+.
T Consensus 154 i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~ 231 (297)
T KOG0810|consen 154 IQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVES 231 (297)
T ss_pred HHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998877665548999999999999999999999997 446678999999999999999999999999999999999999
Q ss_pred hchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccceeeeeeC
Q 036284 237 QGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAIIA 282 (282)
Q Consensus 237 Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~Rk~~c~~i~i 282 (282)
||||||+||+||.+|.+||++|..+|++|.+||+++|||.||+||+
T Consensus 232 QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~ 277 (297)
T KOG0810|consen 232 QGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIII 277 (297)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehH
Confidence 9999999999999999999999999999999999999998887763
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.7e-38 Score=268.75 Aligned_cols=234 Identities=24% Similarity=0.383 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCC
Q 036284 35 NFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGC 114 (282)
Q Consensus 35 ~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~ 114 (282)
-|..++..|+.+++.++..+..+..+|.+.+.-.+......+++.|+..+.+++.+-..++..++..+++.-
T Consensus 22 ~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~i-------- 93 (280)
T COG5074 22 TFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGI-------- 93 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc--------
Confidence 377899999999999999999999999999888888889999999999999999999999999999886411
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHhcCCc-hHHHHHHHHH
Q 036284 115 GPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGES-ESFLQKAIQE 193 (282)
Q Consensus 115 ~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~sdeeie~~~e~~~~-~~~~q~~l~~ 193 (282)
..--++.|-....++|.++++.|+.++..|+..|+++.+|+|. |+.|++|+++++..+.+.+. ++|.|.+|..
T Consensus 94 -----hl~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~-Ia~P~ATEdeve~aInd~nG~qvfsqalL~a 167 (280)
T COG5074 94 -----HLANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYI-IAQPEATEDEVEAAINDVNGQQVFSQALLNA 167 (280)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh-hcCCccchHHHHHHhcccchHHHHHHHHHhc
Confidence 1123577888889999999999999999999999999987655 66889999999999987655 5566777778
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccc
Q 036284 194 QGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSR 273 (282)
Q Consensus 194 ~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~R 273 (282)
+++++++.+|.++++||++|.+||++|.||.+||+||+.||.+|.+++|.|+.|+..+..+|++|+.++.+|.+|.+++|
T Consensus 168 nr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaR 247 (280)
T COG5074 168 NRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAAR 247 (280)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --cceeeeeeC
Q 036284 274 --KWTCYAIIA 282 (282)
Q Consensus 274 --k~~c~~i~i 282 (282)
||.|++|||
T Consensus 248 kkki~c~gI~~ 258 (280)
T COG5074 248 KKKIRCYGICF 258 (280)
T ss_pred hcceehhhhHH
Confidence 699999885
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-31 Score=233.80 Aligned_cols=230 Identities=19% Similarity=0.278 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCC
Q 036284 33 LDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIP 112 (282)
Q Consensus 33 l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~ 112 (282)
.|.|.+.+++|+..+..++.++++|.+.|.+.+ .++..|..+-+.+|+.++.+|+++++.+.+.|+.+....
T Consensus 56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~------- 127 (305)
T KOG0809|consen 56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASL------- 127 (305)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 678999999999999999999999999999987 666667666688999999999999999999999987642
Q ss_pred CCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhccCCCCCHHHHHHHHhcCCchHHHHH
Q 036284 113 GCGPGSSS-DRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERR--YFTVTGQKADEETIENLIASGESESFLQK 189 (282)
Q Consensus 113 ~~~~~s~~-~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~--~~~i~~~~~sdeeie~~~e~~~~~~~~q~ 189 (282)
+..+++ ..+++|.+..+..+++.++.+|+..|+.|.+..+.+-.+- |.. -.+..+..++...|.+.
T Consensus 128 --n~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~---------~~~~~~~~~dd~d~~~~ 196 (305)
T KOG0809|consen 128 --NQLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYED---------SLDNTVDLPDDEDFSDR 196 (305)
T ss_pred --CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhh---------hccccccCcchhhhhhh
Confidence 122444 4588999999999999999999999998877665443321 111 01111122222222222
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 036284 190 AIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQ 269 (282)
Q Consensus 190 ~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~q 269 (282)
.+++++..........+.+|.+||.+|.+||.||++||.||+.||.+||.+||||||||+++..+|+.|.++|.||..||
T Consensus 197 ~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQ 276 (305)
T KOG0809|consen 197 TFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQ 276 (305)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHH
Confidence 22222222234566678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeee
Q 036284 270 KGSRKWTCYAII 281 (282)
Q Consensus 270 k~~Rk~~c~~i~ 281 (282)
|+++|++||+++
T Consensus 277 k~~~k~~~i~~L 288 (305)
T KOG0809|consen 277 KRNKKMKVILML 288 (305)
T ss_pred hcCCceEehHHH
Confidence 999998887654
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.9e-30 Score=226.52 Aligned_cols=234 Identities=21% Similarity=0.309 Sum_probs=180.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 036284 30 RDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASR 109 (282)
Q Consensus 30 ~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~ 109 (282)
-....+|-....+|...|..+...+..|.+.+.. ++++.+..+++.+|+.....++++++.+...|+.+...
T Consensus 13 ~~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~---lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~----- 84 (269)
T KOG0811|consen 13 QEEPFDFQQLAQEIAANIQRINQQVLSLLRFLNS---LGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTL----- 84 (269)
T ss_pred cCCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHH---cCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3556689999999999999999999999988754 78888999999999999999999999999999998753
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC---HHHHHHHHhcCCchHH
Q 036284 110 NIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKAD---EETIENLIASGESESF 186 (282)
Q Consensus 110 ~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~s---deeie~~~e~~~~~~~ 186 (282)
+.+...+..+.+..+|.+.|..++.+|+.+|...-...+ +--.- .+...+ +++-+...+.+.+...
T Consensus 85 ------~~~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~~~a---~~s~~s~~~~~~~~~~~~~~~~~~~ 153 (269)
T KOG0811|consen 85 ------RLESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK--IPMVA---RGSQNSQQLDEESPRVDELSNNGSQ 153 (269)
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--ccccc---cccccchhhhhhhhhhhhhhccchh
Confidence 123456888999999999999999999999877655443 11000 011111 1111111111111111
Q ss_pred HHHHHHHhh--hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036284 187 LQKAIQEQG--RGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQE 264 (282)
Q Consensus 187 ~q~~l~~~~--~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~k 264 (282)
.+..+..+. -+.....+..+++|.+.|.+||..|.||++||+||+.||++||++||.||+||++|..||+.|..+|.+
T Consensus 154 ~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~k 233 (269)
T KOG0811|consen 154 SQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRK 233 (269)
T ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111010 011235677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccceeeeeeC
Q 036284 265 ARELQKGSRKWTCYAIIA 282 (282)
Q Consensus 265 A~k~qk~~Rk~~c~~i~i 282 (282)
|.+|++++|||.||++||
T Consensus 234 A~~yq~~~~k~~~~ll~v 251 (269)
T KOG0811|consen 234 AAKYQRKARKKKCILLLV 251 (269)
T ss_pred HHHHHHHhcCchhhhhHH
Confidence 999999999999998875
No 5
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.90 E-value=4.2e-22 Score=164.08 Aligned_cols=149 Identities=34% Similarity=0.542 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCC
Q 036284 33 LDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIP 112 (282)
Q Consensus 33 l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~ 112 (282)
|+.||..|++|+..|..|+.++..|+.+|..++...+ ....++.+|+.+..+++.+++.|+..|+.|+.......
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~--~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~--- 75 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPD--ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNE--- 75 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 6889999999999999999999999999998765554 46689999999999999999999999999998754321
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHhcCCchHHHH
Q 036284 113 GCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQ 188 (282)
Q Consensus 113 ~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~sdeeie~~~e~~~~~~~~q 188 (282)
..+++++.|++++|+.+|+++|+++|..|+.+|..|+.+|++++.|+|.+ .+|++||||+++++++|++..|++
T Consensus 76 -~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i-~~~~~tdeei~~~~~~~~~~~~~~ 149 (151)
T cd00179 76 -ALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEI-TGGEATDEELEDMLESGNSEIFTS 149 (151)
T ss_pred -ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHcCChhhhcC
Confidence 12367889999999999999999999999999999999999999987664 678999999999999998888875
No 6
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.90 E-value=2.1e-21 Score=169.40 Aligned_cols=247 Identities=18% Similarity=0.214 Sum_probs=158.4
Q ss_pred hhhhhhhhhhhccc--cccccCcC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 036284 8 SFKKYTDLKTQAYQ--DDMEAGRE----RDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMD 81 (282)
Q Consensus 8 ~~~~~~~~~~~~~~--~~~~~~~~----~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~ 81 (282)
+|-+|-...--.++ +|.+.+.. ....|.|.....+|...+..++.++..+..-+.+.. ..++.+...-.+.|+
T Consensus 2 e~~~~~~~s~~~s~~~~d~~~n~~~~e~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~-~p~f~~k~~k~~ei~ 80 (283)
T COG5325 2 EFFGIDAQSKGNSVRFTDEYKNQHRKEDDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHT-EPSFSDKSEKEDEID 80 (283)
T ss_pred CccCCchhhhcccccccchhhhhhHHhhhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-cCcchhhHHHHHHHH
Confidence 56677665444444 67777743 566788999999999999999999999998877643 444444444455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 036284 82 ADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERR- 160 (282)
Q Consensus 82 ~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~- 160 (282)
.++..++.....+...++........ ..-...|...|......++.+|.....--+..+.+.
T Consensus 81 ~L~~kv~~~l~~~~ki~~~~~~~~~s-----------------~~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k 143 (283)
T COG5325 81 ELSKKVNQDLQRCEKILKTKYKNLQS-----------------SFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAK 143 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhH
Confidence 77777776666666555554433211 001234444555555555555444322111111110
Q ss_pred hh--hccCCCCCHHHHH-HHHhcCCchHHH-HHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 161 YF--TVTGQKADEETIE-NLIASGESESFL-QKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEA 236 (282)
Q Consensus 161 ~~--~i~~~~~sdeeie-~~~e~~~~~~~~-q~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~ 236 (282)
.+ ...+..+-+++-+ .........+.. +..+.. .+....-.-+.+|.++|.+|.++|.||++||.||..||.+
T Consensus 144 ~l~~~~~~~~~l~eee~e~~~~~~~sq~~lqq~~l~~---ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~e 220 (283)
T COG5325 144 FLRNKNNDQHPLEEEEDEESLSSLGSQQTLQQQGLSN---EELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGE 220 (283)
T ss_pred HHHhcccccCchhhhhhhhhhhccchhhHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 1111111222222 222222222222 222321 1111222338999999999999999999999999999999
Q ss_pred hchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 036284 237 QGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKW 275 (282)
Q Consensus 237 Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~Rk~ 275 (282)
||++||+||+|++++.+|++.|..+|.||-.|||+++||
T Consensus 221 QG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~ 259 (283)
T COG5325 221 QGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC 259 (283)
T ss_pred hhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc
Confidence 999999999999999999999999999999999999877
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.8e-15 Score=131.50 Aligned_cols=243 Identities=17% Similarity=0.214 Sum_probs=165.5
Q ss_pred hhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 036284 15 LKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKII 94 (282)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i 94 (282)
.+|-+..+|+.+..+...-.+|...+..|..+|.....++..|..|-++ +.+.+.+. -+|.+|+--|.+....+
T Consensus 22 ~~~~~~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKr-ks~f~Dr~-----VeI~eLT~iikqdi~sl 95 (311)
T KOG0812|consen 22 ATRGVNQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKR-KSLFDDRP-----VEIQELTFIIKQDITSL 95 (311)
T ss_pred hccccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCcc-----hhhHHHHHHHhcchHHH
Confidence 5677777777677777778899999999999999999999999999877 44554332 24666666666666666
Q ss_pred HHHHHHHHHhhHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhh-----hhccC-C
Q 036284 95 KGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKE-TVERRY-----FTVTG-Q 167 (282)
Q Consensus 95 ~~~l~~l~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~-~~~r~~-----~~i~~-~ 167 (282)
...|-.|..-... .+..++....-.-++.+..|..++..+...|+.+.+.=....++ ++++.+ ..+.+ |
T Consensus 96 n~~i~~Lqei~~~----~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p 171 (311)
T KOG0812|consen 96 NSQIAQLQEIVKA----NGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANP 171 (311)
T ss_pred HHHHHHHHHHHHH----hccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcc
Confidence 6666555443211 12222211123457788889999999999998886542222222 222221 11111 1
Q ss_pred C----CCHHHHHH-------------HHhcCCc--hHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 168 K----ADEETIEN-------------LIASGES--ESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFL 228 (282)
Q Consensus 168 ~----~sdeeie~-------------~~e~~~~--~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~ 228 (282)
- +....... -++.|++ ++..|.++. ......+++|.+.+++||.+|.||.+||.
T Consensus 172 ~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~qqqQm~ll-------~es~~Y~Q~R~~~~q~IEstIsElG~IF~ 244 (311)
T KOG0812|consen 172 VSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQQQQMALL-------DESDEYVQERAKTMQNIESTISELGGIFQ 244 (311)
T ss_pred cCcccccCCchhhhcCchhhcccccccccccCCCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000111 1122221 122222222 12367899999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccc
Q 036284 229 DMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRK 274 (282)
Q Consensus 229 dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~Rk 274 (282)
+||.||.+|||++.|||.||..+..+++.|..+|.|.-..-+++|+
T Consensus 245 QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRw 290 (311)
T KOG0812|consen 245 QLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRW 290 (311)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchH
Confidence 9999999999999999999999999999999999999999999995
No 8
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.67 E-value=5.5e-15 Score=116.34 Aligned_cols=116 Identities=35% Similarity=0.558 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 036284 32 NLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNI 111 (282)
Q Consensus 32 ~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 111 (282)
+|+.||..|++|+..|..|+.++..|..+|..++..++ ..+.++.+|+.+..+++.+++.|+..|+.|+.......
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~-- 77 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPD--ADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENR-- 77 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--
Confidence 58999999999999999999999999999998765544 44678999999999999999999999999998754321
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 112 PGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYK 154 (282)
Q Consensus 112 ~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r 154 (282)
..++++.|++++++.+|+++|+++|.+|+.+|..|+.+|+
T Consensus 78 ---~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 78 ---ASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred ---ccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1246778999999999999999999999999988776653
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.56 E-value=3.2e-14 Score=100.00 Aligned_cols=63 Identities=37% Similarity=0.603 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036284 208 ERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQK 270 (282)
Q Consensus 208 ~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk 270 (282)
+|+++|..|+.+|.+|++||.+|+.+|.+||++||+|+.||+.|..++..|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999999999999999999999999999999999999999986
No 10
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.53 E-value=5.9e-13 Score=101.96 Aligned_cols=103 Identities=22% Similarity=0.426 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 036284 32 NLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNI 111 (282)
Q Consensus 32 ~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 111 (282)
+||.||+.|++|+..|..|...+++|..+|.+.+..++ ++..++.+|+.++.+|+.+++.|+..|+.|+......
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~--~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~--- 75 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD--QDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS--- 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---
Confidence 48999999999999999999999999999999876665 3478899999999999999999999999999885421
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 036284 112 PGCGPGSSSDRTRTSVVSGLGKKLKDLM 139 (282)
Q Consensus 112 ~~~~~~s~~~rir~~q~~~L~~~f~~~~ 139 (282)
.+.++++++.|++++++.+|+.+|+++|
T Consensus 76 ~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 76 EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 1345667889999999999999999987
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.43 E-value=4.8e-13 Score=92.58 Aligned_cols=59 Identities=39% Similarity=0.648 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 036284 207 QERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEA 265 (282)
Q Consensus 207 ~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA 265 (282)
++|+++|..|+.+|.+|+.||.+|+.+|.+||++||+||+|++.+..++..|...|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999875
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.31 E-value=1.4e-11 Score=86.62 Aligned_cols=64 Identities=34% Similarity=0.570 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 036284 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEA 265 (282)
Q Consensus 202 ~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA 265 (282)
....+++|+++|..|+.+|.+|+.||.+|+.+|.+||++||+|++|++.+..++..|...|.+|
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 3456889999999999999999999999999999999999999999999999999999999875
No 13
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=98.79 E-value=2.9e-07 Score=70.67 Aligned_cols=99 Identities=18% Similarity=0.305 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCchHHH
Q 036284 43 VKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSSDR 122 (282)
Q Consensus 43 I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~s~~~r 122 (282)
|...|..|+.++..|+++.+. ++++.|+.+++++|+.++..++.+++.+...|+.+.... ......+
T Consensus 1 is~~l~~in~~v~~l~k~~~~---lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~----------~~~~~~~ 67 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQ---LGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLS----------SDRSNDR 67 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH---H-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH--------------HHH
T ss_pred CchHHHHHHHHHHHHHHHHHH---hCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhhhH
Confidence 456788899999999888654 678899999999999999999999999999999997640 1234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 123 TRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYK 154 (282)
Q Consensus 123 ir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r 154 (282)
..+.+..+|++.|..++.+|+.+|..|....+
T Consensus 68 ~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 68 QQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78889999999999999999999888766544
No 14
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0021 Score=56.57 Aligned_cols=212 Identities=16% Similarity=0.236 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCC
Q 036284 33 LDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIP 112 (282)
Q Consensus 33 l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~ 112 (282)
...||....++......++..+.+-..+-.. ...+ ...++..+. +.|...++.++....-+...|
T Consensus 5 ~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~-----~~~~-------~~~~t~~lr---~~i~~~~edl~~~~~il~~~~ 69 (235)
T KOG3202|consen 5 EDPFFRVKNETLKLSEEIQGLYQRRSELLKD-----TGSD-------AEELTSVLR---RSIEEDLEDLDELISILERNP 69 (235)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccch-------hHHHHHHHH---HHhHHHHHHHHHHHHHHHhCc
Confidence 4458888888887777777777776665432 1112 222222222 222223333322221111112
Q ss_pred C-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCH---HHHHHHHhcCCchHHHH
Q 036284 113 G-CGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADE---ETIENLIASGESESFLQ 188 (282)
Q Consensus 113 ~-~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~sd---eeie~~~e~~~~~~~~q 188 (282)
. .+-...+.+-|+..+..+..++...-..|... .+. ...-|..+ .+++..+ +........++ .+
T Consensus 70 ~~~~ide~El~~R~~~i~~lr~q~~~~~~~~~~~--~~~----~~~~r~~l--~~~~~~~~~~~~~~~~~~~D~----v~ 137 (235)
T KOG3202|consen 70 SKFGIDEFELSRRRRFIDNLRTQLRQMKSKMAMS--GFA----NSNIRDIL--LGPEKSPNLDEAMSRASGLDN----VQ 137 (235)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccc----cccchhhh--cCCCCCCchhhhHHHhhccCc----HH
Confidence 2 12223456778989998888888876666551 110 00112221 2333332 22222211110 11
Q ss_pred HHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 036284 189 KAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268 (282)
Q Consensus 189 ~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~ 268 (282)
. .+...-..+++-...+..|+.+|.-+..+=..|+.=+++||.+||.-++-++.+..-+..+.+-|.+-.+
T Consensus 138 ~--------~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~- 208 (235)
T KOG3202|consen 138 E--------IVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR- 208 (235)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 0 0011112245555778999999999999999999999999999999999999999999999999998888
Q ss_pred ccccccceeeee
Q 036284 269 QKGSRKWTCYAI 280 (282)
Q Consensus 269 qk~~Rk~~c~~i 280 (282)
.++.+.+||+++
T Consensus 209 ~~s~~~~~~~il 220 (235)
T KOG3202|consen 209 MASQCSQWCAIL 220 (235)
T ss_pred HhccccchhHHH
Confidence 444444455543
No 15
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=5.1e-05 Score=68.39 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccceeeee
Q 036284 201 DTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAI 280 (282)
Q Consensus 201 ~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~Rk~~c~~i 280 (282)
..+....+--.+++.||+.|.|+..|=.-|+.=|-+|..-||.|-.++..|..++..|+.+|.+|.....+.|+|+.+++
T Consensus 222 ~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~l 301 (316)
T KOG3894|consen 222 RLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFL 301 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHH
Confidence 44556666778999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred eC
Q 036284 281 IA 282 (282)
Q Consensus 281 ~i 282 (282)
+|
T Consensus 302 lv 303 (316)
T KOG3894|consen 302 LV 303 (316)
T ss_pred HH
Confidence 53
No 16
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=93.04 E-value=1.6 Score=32.00 Aligned_cols=93 Identities=12% Similarity=0.241 Sum_probs=63.6
Q ss_pred hhhhhhhhhhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHH
Q 036284 7 NSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQ 86 (282)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~ 86 (282)
+.|..|-..+- ..+...+.|..+..++..+.....+...|......++.|....... ....+.+...++..++.+...
T Consensus 11 ~~l~~Wl~~~e-~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~~~~~~~i~~~~~~l~~~ 88 (105)
T PF00435_consen 11 DELLDWLQETE-AKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQL-IDSGPEDSDEIQEKLEELNQR 88 (105)
T ss_dssp HHHHHHHHHHH-HHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHH
Confidence 45677777663 3444444477777888999999999999999999999998877765 444466666767766666655
Q ss_pred HHHHHHHHHHHHHHH
Q 036284 87 VLKRVKIIKGKLEAL 101 (282)
Q Consensus 87 i~~~~~~i~~~l~~l 101 (282)
-..+...+..+-..|
T Consensus 89 w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 89 WEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
Confidence 555555544444333
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=89.15 E-value=1.3 Score=32.69 Aligned_cols=52 Identities=12% Similarity=0.288 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQL 262 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL 262 (282)
..+.+|...+.++.++..+=-.-+.+.|+-|+.++...+.-......-...-
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a 54 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNA 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHH
Confidence 3477888889999888888888888999999999988777766666555533
No 18
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=2.9 Score=37.76 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036284 210 HDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQE 264 (282)
Q Consensus 210 ~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~k 264 (282)
...+.+|-.-+..|..|=.||+.-|+.|.+.||+|+++|+.+-..|..++.-+++
T Consensus 217 D~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 217 DENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 3457778888888999999999999999999999999999999999988876643
No 19
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.86 E-value=1.7 Score=33.85 Aligned_cols=68 Identities=15% Similarity=0.318 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccceeeee
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAI 280 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~Rk~~c~~i 280 (282)
+.+..|..-|.-|..|=-++..=|..|..+||.++.....+.......-..++.-.+. +.++.+|+++
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~ 103 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMA 103 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 4577778888888889999999999999999999999999999999988888765555 6778888644
No 20
>smart00150 SPEC Spectrin repeats.
Probab=82.45 E-value=15 Score=26.46 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=48.8
Q ss_pred hhhhhhhhhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 036284 8 SFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADV 84 (282)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~ 84 (282)
.+..|-+.+-. .+.+.+.|.....++..+.....+...|......++.+..+-...... .+.+...+...++.+.
T Consensus 9 ~l~~Wl~~~e~-~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~-~~~~~~~i~~~~~~l~ 83 (101)
T smart00150 9 ELEAWLSEKEA-LLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE-GHPDAEEIEERLEELN 83 (101)
T ss_pred HHHHHHHHHHH-HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHH
Confidence 34567666653 233344455667788889999999999999999999998877665443 2333444444444443
No 21
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=79.79 E-value=11 Score=25.67 Aligned_cols=45 Identities=20% Similarity=0.406 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHH
Q 036284 212 AIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVR 256 (282)
Q Consensus 212 eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~ 256 (282)
+++.++..+..|-..|.....=-...++.|++.|.+++.-..|+-
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv 46 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMV 46 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999999999999998776653
No 22
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.58 E-value=6 Score=30.97 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGS 272 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~ 272 (282)
+.+++++..+.|+-+++.+==.=|-+-|+-|+.+++-.++-......-. ..|.+.+++.
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~---~~A~klkrk~ 87 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFE---KTAVKLKRKM 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4577788888888899888888899999999999876665544433333 3455555544
No 23
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.54 E-value=79 Score=29.02 Aligned_cols=70 Identities=14% Similarity=0.291 Sum_probs=53.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 036284 199 ILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268 (282)
Q Consensus 199 ~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~ 268 (282)
++...++|..=.+-|..|..-..+++-|-..=+.+|..=...+.+-..+|.++.++|.+|...-++|++.
T Consensus 201 iq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~ 270 (297)
T KOG0810|consen 201 IQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKW 270 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455666777777788888888888888888888888777777888888888888888887766555543
No 24
>PRK04325 hypothetical protein; Provisional
Probab=70.72 E-value=36 Score=24.36 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHH
Q 036284 213 IKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRR 257 (282)
Q Consensus 213 I~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 257 (282)
|..||..+.-.-+...+|+..|.+|+..|+.....+..-.+.+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888889999999999999999888777766665544
No 25
>PRK00295 hypothetical protein; Provisional
Probab=68.99 E-value=37 Score=23.85 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHH
Q 036284 213 IKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRR 257 (282)
Q Consensus 213 I~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 257 (282)
|..||..+.-.-++..+|+..|..|+..||.....+..-.+.+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999888877776665554
No 26
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=66.07 E-value=47 Score=23.96 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 036284 42 NVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVK 92 (282)
Q Consensus 42 ~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~ 92 (282)
-|+..|..+..+++.|+......... ..+..++..+|+.+...+..+..
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~--~~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESN--LPDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777776665543221 23456677788877766655544
No 27
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.92 E-value=36 Score=23.91 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGT 259 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~ 259 (282)
..|..||..+.-.-+...+|+..|..|...||+.+..+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3477888888888888888899999999999999888877776666543
No 28
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=63.05 E-value=61 Score=24.18 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 036284 35 NFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAA 107 (282)
Q Consensus 35 ~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~ 107 (282)
-||.--+++...|..++.....-..+. +... ....+..+..++......+...|.+|++.+..
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~-------~~~~---~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLR-------SDTS---SSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-------THCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhc-------ccCC---CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377778888877777665555554432 1111 23456677777778888888888888876653
No 29
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=56.88 E-value=1.9e+02 Score=27.76 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 30 RDNLDNFFEDVENVKAEMKTVEKLYKRLQEANE 62 (282)
Q Consensus 30 ~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~ 62 (282)
+..+..++.++.+|+.....+...++.|+....
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~ 243 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQYQ 243 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778999999999999999999999987443
No 30
>PHA02675 ORF104 fusion protein; Provisional
Probab=56.11 E-value=65 Score=23.69 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHH
Q 036284 216 IEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFV 255 (282)
Q Consensus 216 le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v 255 (282)
||..+..|-++|..+..=...=++.|++.|.+++....++
T Consensus 35 le~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 35 VEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555557788888888888999999999988876554
No 31
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=55.56 E-value=28 Score=22.55 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 036284 215 EIEKNLLELHQVFLDMAALVEAQG 238 (282)
Q Consensus 215 ~le~si~eL~~lF~dla~LV~~Qg 238 (282)
.|-++|.++++++.+|-.++.+|-
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~ 28 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQI 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888999999999999888774
No 32
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=53.69 E-value=59 Score=21.10 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036284 215 EIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQK 270 (282)
Q Consensus 215 ~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk 270 (282)
.-...+..|.....+|..|..+=|.+|..=..-++....+++.+...+..|.+.-+
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778888888888888888888877777788888888888888887776543
No 33
>PRK02793 phi X174 lysis protein; Provisional
Probab=52.63 E-value=82 Score=22.38 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRR 257 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 257 (282)
..|..||..+.-.-++..+|+..|..|+..||.....+..-.+.+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34777888888888888888888999999988888777766555543
No 34
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=50.04 E-value=49 Score=29.32 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEA 265 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA 265 (282)
.|+..|.+++.+=...| +..+.+-..+|++.+..++.....+......|+.-
T Consensus 170 ~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 170 EEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777666665 56688999999999999999999999988887654
No 35
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=49.23 E-value=37 Score=24.80 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 036284 45 AEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAAS 108 (282)
Q Consensus 45 ~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~ 108 (282)
..+..|...+..|.....++..++...-.... .. ..+..++..+...|+..+..+...+..+
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~-~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l 68 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSPD-QD-SELKRELDELTDEIKQLFQKIKKRLKQL 68 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677666665554333211100000 11 3466666666666766666666655443
No 36
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=49.07 E-value=2.2e+02 Score=26.22 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 125 TSVVSGLGKKLKDLMDDFQNFRNK 148 (282)
Q Consensus 125 ~~q~~~L~~~f~~~~~~f~~~Q~~ 148 (282)
.|++..|.++|+.+......++..
T Consensus 272 NnqL~~l~q~fr~a~~~lse~~e~ 295 (384)
T KOG0972|consen 272 NNQLASLMQKFRRATDTLSELREK 295 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555443
No 37
>PRK00736 hypothetical protein; Provisional
Probab=48.30 E-value=94 Score=21.81 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHH
Q 036284 213 IKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRR 257 (282)
Q Consensus 213 I~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 257 (282)
|..||..+.-.-....+|+..|..|...||.....+..-.+.+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888999999998888777766665543
No 38
>PRK04406 hypothetical protein; Provisional
Probab=45.61 E-value=1.1e+02 Score=21.92 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRR 257 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 257 (282)
..|..||..+.-.-.+..+|+..|..|...||.....+..-.+.+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34777888888888888888888999998888888777766555543
No 39
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.29 E-value=74 Score=28.81 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 036284 224 HQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAR 266 (282)
Q Consensus 224 ~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 266 (282)
...=.-...+..+||+.|++||.|+.........|...|..-.
T Consensus 92 ~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~ 134 (273)
T KOG3065|consen 92 REDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK 134 (273)
T ss_pred HHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3333445566789999999999999999999998888876443
No 40
>PRK02119 hypothetical protein; Provisional
Probab=44.93 E-value=1.1e+02 Score=21.75 Aligned_cols=47 Identities=9% Similarity=0.183 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRR 257 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 257 (282)
..|..||..+.-.-+...+|+..|..|...||.....+..-.+.+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888888889999999999998888777766655543
No 41
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=44.43 E-value=1.2e+02 Score=21.95 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 036284 31 DNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKII 94 (282)
Q Consensus 31 ~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i 94 (282)
++-...-..+..+...+..+.-...+|....+.+-...+.+.-..+...|+.+...+...+.+|
T Consensus 10 ~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 10 SPGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777777777777776666654444444444444555555554444444333
No 42
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=43.81 E-value=1e+02 Score=20.95 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 036284 217 EKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARE 267 (282)
Q Consensus 217 e~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 267 (282)
...+.|.-++=.+...-+..|++.|.++...+..+..++..+..-|..-.+
T Consensus 14 ~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 14 HRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 334444445555666667889999999999999999999999988876543
No 43
>PHA03395 p10 fibrous body protein; Provisional
Probab=43.77 E-value=1.3e+02 Score=22.28 Aligned_cols=56 Identities=18% Similarity=0.340 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 42 NVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALER 103 (282)
Q Consensus 42 ~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~ 103 (282)
-|+..|..+..+++.|+...+... .+.-+..++..+|+.+....+. +...+..+..
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~--~nlpdv~~l~~kLdaq~~~Ltt----i~tkv~~I~d 63 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVR--ANLPDVTEINEKLDAQSASLDT----ISSAVDNITD 63 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--hcCCcHHHHHHHHHhHHHHHHH----HHHHHHHHHH
Confidence 355666666666666665544421 1223566778888888765544 4444545443
No 44
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=41.75 E-value=20 Score=27.15 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036284 43 VKAEMKTVEKLYKRLQEAN 61 (282)
Q Consensus 43 I~~~i~~i~~~i~~L~~l~ 61 (282)
+......+...++.|..++
T Consensus 40 ~~~~~~~l~~~~~~l~~k~ 58 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKY 58 (99)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 45
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.24 E-value=2.1e+02 Score=24.73 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=13.2
Q ss_pred hhhhhhhhhhhccccccc
Q 036284 8 SFKKYTDLKTQAYQDDME 25 (282)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (282)
-|.-|.++-.+|.=|...
T Consensus 97 LF~EWe~EL~~Y~~~sLR 114 (201)
T PF11172_consen 97 LFDEWEQELDQYSNASLR 114 (201)
T ss_pred HHHHHHHHHHHHcCHHHH
Confidence 477888888887766555
No 46
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=39.78 E-value=3.6e+02 Score=26.11 Aligned_cols=121 Identities=16% Similarity=0.336 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 78 ARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETV 157 (282)
Q Consensus 78 ~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~ 157 (282)
.+|..-.+.+-..+..++..++.|..++.. + ++ |....++..+...+..+-..-..++. |-..+
T Consensus 209 ~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~-R---gv-------Rp~~~qle~v~kdi~~a~~~L~~m~~-----~i~~~ 272 (424)
T PF03915_consen 209 KKLSEESDRLLTKVDDLQDLVEDLRKDVVQ-R---GV-------RPSPKQLETVAKDISRASKELKKMKE-----YIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------------HHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c---CC-------cCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHh
Confidence 345555555556666677777777776543 1 23 33455677777888777777766543 22233
Q ss_pred hhhhhhccCCCCCHHHHHHHHhcCCchHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036284 158 ERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQ 237 (282)
Q Consensus 158 ~r~~~~i~~~~~sdeeie~~~e~~~~~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Q 237 (282)
+.....+. +.|++.+++. +.|+. .+ ..-+..|...+.-+.+.|.-+...+.+|
T Consensus 273 kp~WkKiW-----E~EL~~V~eE---QqfL~----~Q---------------edL~~DL~eDl~k~~etf~lveq~~~~Q 325 (424)
T PF03915_consen 273 KPIWKKIW-----ESELQKVCEE---QQFLK----LQ---------------EDLLSDLKEDLKKASETFALVEQCTEEQ 325 (424)
T ss_dssp HHHHHHHH-----HHHHHHHHHH---HHHHH----HH---------------HHHHHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred CHHHHHHH-----HHHHHHHHHH---HHHHH----HH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 4566666542 23432 11 0124555555666667777777777766
Q ss_pred chHH
Q 036284 238 GHQL 241 (282)
Q Consensus 238 ge~i 241 (282)
+..-
T Consensus 326 ~k~~ 329 (424)
T PF03915_consen 326 EKSP 329 (424)
T ss_dssp ----
T ss_pred cccC
Confidence 6543
No 47
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=39.72 E-value=1.3e+02 Score=25.85 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=41.0
Q ss_pred HHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHH
Q 036284 189 KAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSF 254 (282)
Q Consensus 189 ~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~ 254 (282)
..+.+.++-.+..+|.+-+.=|++|..++.-|..|.+--.+|..|+..=..|.+.|+.=.....++
T Consensus 110 k~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~~~~ 175 (200)
T PF07412_consen 110 KELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQELDN 175 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 356666665566778777777777777777777777666666666666666666666544444433
No 48
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=39.53 E-value=1.7e+02 Score=26.87 Aligned_cols=68 Identities=12% Similarity=0.204 Sum_probs=46.2
Q ss_pred ccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 25 EAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKL 98 (282)
Q Consensus 25 ~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l 98 (282)
-+++++.+|+.-+..+.+++.+|..+...++.+....... .....-+..+......+..+...|...+
T Consensus 71 ~aaRGNt~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e~~------~~~~~~~~~i~~V~~~ik~LL~rId~ai 138 (302)
T PF05508_consen 71 IAARGNTSLESALPLTKDLRREIDSFDERLEEAAEKEELS------KSSENQKESIKKVERYIKDLLARIDDAI 138 (302)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------cCcchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667789999999999999999999999999887654321 1122223445555555555555555554
No 49
>PHA03046 Hypothetical protein; Provisional
Probab=35.23 E-value=2e+02 Score=23.02 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHH
Q 036284 212 AIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFV 255 (282)
Q Consensus 212 eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v 255 (282)
+|..+.-.+.-|..+|+....=...=+..|+++|.+++....++
T Consensus 85 ~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 85 DIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777888888888888888999999999988776554
No 50
>PF03359 GKAP: Guanylate-kinase-associated protein (GKAP) protein; InterPro: IPR005026 The protein called postsynaptic density (PSD) is a specialised submembranous structure within which synaptic membrane proteins are linked to cytoskeleton and signalling proteins. Guanylate-kinase-associated protein (PSD-95/synapse-associated protein 90) is one of the major components of PSD, and functions as a scaffold protein for various ion channels and associated signalling molecules.; GO: 0007267 cell-cell signaling
Probab=34.70 E-value=73 Score=29.98 Aligned_cols=57 Identities=23% Similarity=0.386 Sum_probs=48.7
Q ss_pred ccchhhhhhhhhhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 4 LFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEE 63 (282)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~ 63 (282)
||+.-|+.+..+--+..-|+.+...+...|..|++- |.-.|.++...-+.|.+|...
T Consensus 219 L~~qKf~QF~~L~~~~~~~~~~~~~t~~DL~GFWDm---v~lqVedv~~kF~~L~~lk~n 275 (357)
T PF03359_consen 219 LMSQKFKQFEGLCQQNENPSGEPPTTCQDLAGFWDM---VYLQVEDVDKKFDELEKLKAN 275 (357)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCCcchhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHC
Confidence 788899999999888777777777789999999996 567899999999999988764
No 51
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=33.71 E-value=1.4e+02 Score=19.76 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 036284 219 NLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268 (282)
Q Consensus 219 si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~ 268 (282)
.|..|..-..+|..|...=|..|+.=..-++....+|+.+...|.++.+.
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~ 54 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKK 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443
No 52
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=32.01 E-value=2.3e+02 Score=22.66 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=17.0
Q ss_pred hhcCChhhHHHHHHHHHHHHHHHHHHH
Q 036284 65 KIVHNARTMKELRARMDADVQQVLKRV 91 (282)
Q Consensus 65 ~~~~~~~~~~~l~~~l~~l~~~i~~~~ 91 (282)
+..++..+...|+.+|+.|...+..+.
T Consensus 103 LgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 103 LGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666677777777777666555543
No 53
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=30.88 E-value=2.3e+02 Score=21.20 Aligned_cols=66 Identities=11% Similarity=0.226 Sum_probs=40.0
Q ss_pred HHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036284 199 ILDTISEIQERHDAIK-EIEKNLLELHQVFLDMAALVEAQ-GHQLNDIESHVAHANSFVRRGTEQLQE 264 (282)
Q Consensus 199 ~~~~l~~i~~R~~eI~-~le~si~eL~~lF~dla~LV~~Q-ge~id~Ie~nv~~a~~~v~~g~~eL~k 264 (282)
+...+..+......+. +.+.--.++..-|..|-.++.+. ..+++.|+..-......+..-...+..
T Consensus 19 ~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 19 LEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555543 34445566778888888777754 568888887665555555444444433
No 54
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=30.69 E-value=4.4e+02 Score=24.38 Aligned_cols=97 Identities=20% Similarity=0.271 Sum_probs=60.8
Q ss_pred chhhhhhhhhhh---hccccccccCcCCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh----hcCCh
Q 036284 6 SNSFKKYTDLKT---QAYQDDMEAGRERDNLDNFFEDVENVKAEMKTV--------EKLYKRLQEANEESK----IVHNA 70 (282)
Q Consensus 6 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i--------~~~i~~L~~l~~~~~----~~~~~ 70 (282)
.++|-.|-+++. |...|+.++++.+....+|+...+ .+|.++ ...+.+|+.++.+.. .-.+.
T Consensus 16 ~~~yinYk~LKK~lK~~~~~~~~~~~~~~~e~dFv~~Ld---~ELEKv~~F~lek~~el~~Rl~~L~e~~~~~~~~~~~~ 92 (310)
T KOG1161|consen 16 KDKYINYKELKKLLKQYSIQTADSSPDSRDESDFVRLLD---AELEKVNGFQLEKESELIIRLKELEEKIDALSLEPPSA 92 (310)
T ss_pred hhhhcCHHHHHHHHHHhccccccCCcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcch
Confidence 567888888887 666677776655445666654433 344433 355667777776653 22233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036284 71 RTMKELRARMDADVQQVLKRVKIIKGKLEALERSN 105 (282)
Q Consensus 71 ~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~ 105 (282)
.+-..+++.|.+...+...+.+-+.-..--+.+-+
T Consensus 93 ~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~KIL 127 (310)
T KOG1161|consen 93 EEMKELREELVDFHGEMVLLENFSRLNYTGFAKIL 127 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45677888888888888887776665554444433
No 55
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=29.95 E-value=5.2e+02 Score=25.02 Aligned_cols=118 Identities=20% Similarity=0.389 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 77 RARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKET 156 (282)
Q Consensus 77 ~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~ 156 (282)
+.+|+...+.+-..+-.+++-++.|.+++.. + +..|. ..|+..+.+.+..+......++. |-.+
T Consensus 212 k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~-R---gVRp~-------~~qLe~v~kdi~~a~keL~~m~~-----~i~~ 275 (426)
T smart00806 212 KKKLSEDSDSLLTKVDDLQDIIEALRKDVAQ-R---GVRPS-------KKQLETVQKELETARKELKKMEE-----YIDI 275 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c---CCCCC-------HHHHHHHHHHHHHHHHHHHHHHH-----HHhh
Confidence 3457777777777777888888888888653 1 33332 45777888888888877777642 2222
Q ss_pred HhhhhhhccCCCCCHHHHHHHHhcCCchHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 157 VERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEA 236 (282)
Q Consensus 157 ~~r~~~~i~~~~~sdeeie~~~e~~~~~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~ 236 (282)
.+-....| =+.|++.+++. +.|+. +++ .=+..|...+.-+.+.|--+...+.+
T Consensus 276 eKP~WkKi-----WE~EL~~VcEE---qqfL~--lQe-----------------dL~~DL~dDL~ka~eTf~lVeq~~~e 328 (426)
T smart00806 276 EKPIWKKI-----WEAELDKVCEE---QQFLT--LQE-----------------DLIADLKEDLEKAEETFDLVEQCCEE 328 (426)
T ss_pred cChHHHHH-----HHHHHHHHHHH---HHHHH--HHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22112222 15677777763 23442 111 11344555555556666666666666
Q ss_pred h
Q 036284 237 Q 237 (282)
Q Consensus 237 Q 237 (282)
|
T Consensus 329 Q 329 (426)
T smart00806 329 Q 329 (426)
T ss_pred H
Confidence 6
No 56
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=29.66 E-value=4.1e+02 Score=23.68 Aligned_cols=141 Identities=11% Similarity=0.229 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h------h-hhhccCCCCCHHHH-H-HHHhcCCchHHHHHHHHHhhh
Q 036284 128 VSGLGKKLKDLMDDFQNFRNKMQYEYKETVE--R------R-YFTVTGQKADEETI-E-NLIASGESESFLQKAIQEQGR 196 (282)
Q Consensus 128 ~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~--r------~-~~~i~~~~~sdeei-e-~~~e~~~~~~~~q~~l~~~~~ 196 (282)
+..+.++|..+=..|+.- ++...|-+.. . - ..-| + +.....+ . .++.... ..--+.+|.+
T Consensus 109 f~~~I~~yr~i~~~yree---~~e~~rrQy~Ia~P~ATEdeve~aI-n-d~nG~qvfsqalL~anr-~geAktaL~E--- 179 (280)
T COG5074 109 FLKLIQDYRIIDSNYREE---EKEQARRQYIIAQPEATEDEVEAAI-N-DVNGQQVFSQALLNANR-RGEAKTALAE--- 179 (280)
T ss_pred HHHHHHHHHHHHHHhhHH---HHHHHHHhhhhcCCccchHHHHHHh-c-ccchHHHHHHHHHhcCc-cchHHHHHHH---
Confidence 456677888887777764 3444443321 0 0 1112 1 1222222 2 3343321 1123334532
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccc-c
Q 036284 197 GQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRK-W 275 (282)
Q Consensus 197 ~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~Rk-~ 275 (282)
++....++..=.+-+..|-.-..++.+|..+=..+|.-=..-+...+.|+..+..++++|..-..+|++.+ -|= .
T Consensus 180 --vq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkk--i~c~g 255 (280)
T COG5074 180 --VQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKK--IRCYG 255 (280)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcc--eehhh
Confidence 22333344444444555555566666677777777777677777788889999999998888876666544 353 3
Q ss_pred eeeeee
Q 036284 276 TCYAII 281 (282)
Q Consensus 276 ~c~~i~ 281 (282)
+|++|+
T Consensus 256 I~~iii 261 (280)
T COG5074 256 ICFIII 261 (280)
T ss_pred hHHHHH
Confidence 555443
No 57
>PRK00846 hypothetical protein; Provisional
Probab=29.35 E-value=2.2e+02 Score=20.59 Aligned_cols=48 Identities=10% Similarity=0.040 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRG 258 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g 258 (282)
..|..||..+.-.-++..+|+..|..|...|++...-+..-.+.....
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777778888888888888888888888888887777666655543
No 58
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=28.16 E-value=1.8e+02 Score=19.05 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 036284 212 AIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268 (282)
Q Consensus 212 eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~ 268 (282)
.+.+-...+..|.....++..|..+=|.+|+.=...++....++..+...+..|.+.
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~ 62 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555556666666666666666555666555555666666666666666666544
No 59
>PRK14127 cell division protein GpsB; Provisional
Probab=27.98 E-value=69 Score=24.86 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=8.6
Q ss_pred CCCHHHHHHHHHH
Q 036284 30 RDNLDNFFEDVEN 42 (282)
Q Consensus 30 ~~~l~~f~~~v~~ 42 (282)
+.....|++.|..
T Consensus 25 ~~EVD~FLd~V~~ 37 (109)
T PRK14127 25 QDEVDKFLDDVIK 37 (109)
T ss_pred HHHHHHHHHHHHH
Confidence 4556678877654
No 60
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=27.47 E-value=2.6e+02 Score=21.94 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 036284 223 LHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARE 267 (282)
Q Consensus 223 L~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 267 (282)
|.++|..|..||+.=..-++.+|...-.|-..|-.|-.+|++..+
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 566777777777654444567888888888888888888876543
No 61
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.11 E-value=6.2e+02 Score=25.00 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=30.6
Q ss_pred cccchhhhhhhhhhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 3 DLFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEA 60 (282)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l 60 (282)
|.|+++++.|-++.|-+.-|-- ..--.|-+.+..|..+|..+....++|-.+
T Consensus 235 dY~~~~Y~~fl~~~~~~~~~e~------Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~ 286 (622)
T COG5185 235 DYFTESYKSFLKLEDNYEPSEQ------ELKLGFEKFVHIINTDIANLKTQNDNLYEK 286 (622)
T ss_pred HHHHHHHHHHhcCCCccCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888777664432211 222235666666777776666666655443
No 62
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=25.82 E-value=1.9e+02 Score=20.79 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=18.0
Q ss_pred hhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 16 KTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQE 59 (282)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~ 59 (282)
++++..|+.+++.- =+..|.+|...+.....+|.+|++
T Consensus 10 ~w~aqfp~~~~p~m------~l~svgd~e~eLerCK~sirrLeq 47 (79)
T PF09036_consen 10 AWRAQFPDSEPPVM------ELRSVGDIEQELERCKASIRRLEQ 47 (79)
T ss_dssp HHHHHSTTS-------------SSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCccCCcHH------HHHHhccHHHHHHHHHHHHHHHHH
Confidence 35556665443332 133455566666666666666654
No 63
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=25.76 E-value=2.2e+02 Score=22.32 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CChhhHHHHHHHH
Q 036284 31 DNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIV--HNARTMKELRARM 80 (282)
Q Consensus 31 ~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~--~~~~~~~~l~~~l 80 (282)
.....|+..+.++-....+.+..+.+|.+........ ....|+..++.||
T Consensus 70 ~v~~~y~~~~~evL~sv~KtEeSL~rlkk~~~~~~~~~~~~~sD~dKIr~QL 121 (125)
T PF12022_consen 70 EVTERYYEIASEVLTSVRKTEESLKRLKKRRKRTSGSSSGGMSDDDKIRLQL 121 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCcHHHHHHHH
Confidence 3344677777777777777777777776654332111 1233555555543
No 64
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.40 E-value=1.4e+02 Score=21.67 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 206 IQERHDAIKEIEKNLLELHQVFLDMAALV 234 (282)
Q Consensus 206 i~~R~~eI~~le~si~eL~~lF~dla~LV 234 (282)
+++...+|..|+..+.-..+++.++..+|
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556777778888877777777776665
No 65
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=25.36 E-value=3.4e+02 Score=21.37 Aligned_cols=61 Identities=15% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 036284 44 KAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNA 106 (282)
Q Consensus 44 ~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~ 106 (282)
-..+..|...|..|......+..++..-... ...-..+...+..+...+....+.+...+.
T Consensus 5 ~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~--~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk 65 (151)
T cd00179 5 FEEVEEIRGNIDKISEDVEELQKLHSQLLTA--PDADPELKQELESLVQEIKKLAKEIKGKLK 65 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776654433222110000 001223444445555555555555554443
No 66
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=25.19 E-value=1.9e+02 Score=20.85 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=29.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 28 RERDNLDNFFEDVENVKAEMKTVEKLYKRLQEAN 61 (282)
Q Consensus 28 ~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~ 61 (282)
........|+.++.+|...|..+...+.+++.-+
T Consensus 33 ~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~Y 66 (87)
T PF10496_consen 33 PKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAY 66 (87)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677899999999999999999999998765
No 67
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.22 E-value=4e+02 Score=21.79 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=44.7
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 27 GRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALER 103 (282)
Q Consensus 27 ~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~ 103 (282)
-.++..+..+-.++.+++..+..+...+..|..--.......+ ..++...+..+..+ ...+..+|..|..
T Consensus 68 ~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t---~~el~~~i~~l~~e----~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 68 VPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT---NEELREEIEELEEE----IEELEEKLEKLRS 137 (169)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 3456678888888999999999998888888765544333333 33455555555544 3445555555553
No 68
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=24.06 E-value=8.9e+02 Score=25.78 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhchHHHHH
Q 036284 222 ELHQVFLDMAALVEAQGHQLNDI 244 (282)
Q Consensus 222 eL~~lF~dla~LV~~Qge~id~I 244 (282)
+..+-..+|+.|.-+|..+.|.-
T Consensus 620 ~~~q~m~~L~e~lr~QQ~L~D~t 642 (851)
T TIGR02302 620 DMEQQMNKLGELMRKQQQLRDET 642 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777653
No 69
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=23.76 E-value=4.8e+02 Score=22.55 Aligned_cols=55 Identities=9% Similarity=0.165 Sum_probs=36.8
Q ss_pred cccchhhhhhhhhhhhc-------cccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 3 DLFSNSFKKYTDLKTQA-------YQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQ 58 (282)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~ 58 (282)
.+|.+.|.|.....|-. ++|.++ ++.......|-.-++.....+......+.-|+
T Consensus 63 ~~l~~E~~R~~~~~~~~~lD~sRY~l~~p~-~~~~~d~~~w~~al~na~a~lehq~~R~~NLe 124 (221)
T PF05700_consen 63 PLLQAELERVASGEPMQGLDMSRYELPPPP-SGKSNDVEAWKEALDNAYAQLEHQRLRLENLE 124 (221)
T ss_pred hhHHHHHHHHHcCCCCCccCHHhcCCCCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777765533 333333 33345889999999999998888777666554
No 70
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.22 E-value=1.1e+03 Score=26.39 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 31 DNLDNFFEDVENVKAEMKTVEKLYKRL 57 (282)
Q Consensus 31 ~~l~~f~~~v~~I~~~i~~i~~~i~~L 57 (282)
..+..+-.++..+...+..+...++.+
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l 848 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELN 848 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666554444433
No 71
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=22.11 E-value=4.4e+02 Score=24.34 Aligned_cols=34 Identities=3% Similarity=0.184 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 29 ERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANE 62 (282)
Q Consensus 29 ~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~ 62 (282)
.+....++...++++...|..+++.+.+|...|.
T Consensus 166 ~lPD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~ 199 (325)
T PF06694_consen 166 PLPDVSELEKKASELSKQLQSLQQQVAELASKHP 199 (325)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3556778999999999999999999999988764
No 72
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.77 E-value=2.9e+02 Score=19.30 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 207 QERHDAIKEIEKNLLELHQVFLDMAALVE 235 (282)
Q Consensus 207 ~~R~~eI~~le~si~eL~~lF~dla~LV~ 235 (282)
.+|+..|..++..+.|..++..+|..-|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999988774
No 73
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=21.65 E-value=1.2e+02 Score=21.25 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=15.5
Q ss_pred HHHHHhhhhhhccCCCCCHHHHHHHHhc
Q 036284 153 YKETVERRYFTVTGQKADEETIENLIAS 180 (282)
Q Consensus 153 ~r~~~~r~~~~i~~~~~sdeeie~~~e~ 180 (282)
|+.++..++.. .-|++++.++.++++.
T Consensus 14 yKKrL~e~l~~-k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 14 YKKRLAERLRA-KLPDATPTELKELVEK 40 (68)
T ss_dssp HHHHHHHHHHH-H-TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCCCHHHHHHHHHH
Confidence 44444433221 2368999999999874
No 74
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=20.96 E-value=6.4e+02 Score=22.94 Aligned_cols=66 Identities=14% Similarity=0.252 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 036284 201 DTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAR 266 (282)
Q Consensus 201 ~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 266 (282)
....+|..=++-|..|-.-..+|..+..+=+.+|.-=+.-|+++-.|+..|.....+|..+=+.+.
T Consensus 192 er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~ 257 (283)
T COG5325 192 ERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTK 257 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhc
Confidence 345567777899999999999999999999999999999999999999999999999998765443
No 75
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.66 E-value=3.2e+02 Score=19.35 Aligned_cols=39 Identities=8% Similarity=0.205 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q 036284 206 IQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDI 244 (282)
Q Consensus 206 i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~I 244 (282)
|=.+|.++...-..|..|..-+..|..+|.+.+..+.++
T Consensus 46 V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 46 VYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555555555555555555555544443
No 76
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.33 E-value=9.1e+02 Score=24.49 Aligned_cols=39 Identities=10% Similarity=0.284 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHH
Q 036284 52 KLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKR 90 (282)
Q Consensus 52 ~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~ 90 (282)
..-.+|..+..++....+..+-..+...++.+..++...
T Consensus 402 ~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~ 440 (650)
T TIGR03185 402 ELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRS 440 (650)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333444445455555554444444433
No 77
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=20.19 E-value=2.8e+02 Score=25.42 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=7.9
Q ss_pred ccchhhhhhhhhhh
Q 036284 4 LFSNSFKKYTDLKT 17 (282)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (282)
.|++-|..|.++..
T Consensus 108 ~l~~ff~a~~~ls~ 121 (322)
T TIGR02492 108 YLNNFFNALQELAK 121 (322)
T ss_pred HHHHHHHHHHHHHh
Confidence 35555666665543
No 78
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=20.18 E-value=2.7e+02 Score=21.07 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 33 LDNFFEDVENVKAEMKTVEKLYKRLQEANEE 63 (282)
Q Consensus 33 l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~ 63 (282)
-++|...++++..+++.|...++.|......
T Consensus 68 td~~~e~ie~i~~dl~ei~e~~~~i~e~~~~ 98 (101)
T COG3388 68 TDDFPEFIEEIIGDLSEINEEAENIEEDVAK 98 (101)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777888888888888888776543
No 79
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.14 E-value=1.2e+03 Score=25.97 Aligned_cols=228 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC
Q 036284 33 LDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNA--RTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRN 110 (282)
Q Consensus 33 l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~--~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~ 110 (282)
+..++.+++.+..-+........+..+.-++.+...+. ....+...++..|+.++..-..+=.....+++.-.++.
T Consensus 1424 l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~v-- 1501 (1758)
T KOG0994|consen 1424 LRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEV-- 1501 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhhhhhccCCCCCHHHHHHHHhcC
Q 036284 111 IPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQY---------EYKETVERRYFTVTGQKADEETIENLIASG 181 (282)
Q Consensus 111 ~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~---------~~r~~~~r~~~~i~~~~~sdeeie~~~e~~ 181 (282)
+.-..|.+|+ ++..|..+.++.+....++...... ......+|.-.......-+-|+|.+.++..
T Consensus 1502 L~l~lp~tpe------qi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~A 1575 (1758)
T KOG0994|consen 1502 LALELPLTPE------QIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEA 1575 (1758)
T ss_pred HhccCCCCHH------HHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred Cc-hHHHHHHHH--HhhhhhHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHH
Q 036284 182 ES-ESFLQKAIQ--EQGRGQILDTISEIQERHDAIKEIEKN----LLELHQVFLDMAALVEAQGHQLNDIESHVAHANSF 254 (282)
Q Consensus 182 ~~-~~~~q~~l~--~~~~~~~~~~l~~i~~R~~eI~~le~s----i~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~ 254 (282)
+. ..-.+.+|. ......+++.|..|+++.........+ +.+|......|-.-..+++.---.|+.-+..|...
T Consensus 1576 d~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~ 1655 (1758)
T KOG0994|consen 1576 DVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQ 1655 (1758)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHh
Q 036284 255 VRRGTEQLQEAREL 268 (282)
Q Consensus 255 v~~g~~eL~kA~k~ 268 (282)
...|.+.+..-.++
T Consensus 1656 A~~a~q~~~~lq~~ 1669 (1758)
T KOG0994|consen 1656 ALSAEQGLEILQKY 1669 (1758)
T ss_pred HHHHHHHHHHHHHH
Done!