Query 036284
Match_columns 282
No_of_seqs 143 out of 1257
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 8.1E-48 2.8E-52 344.3 17.2 241 30-278 27-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 2.6E-41 9E-46 304.2 13.7 238 30-273 40-279 (279)
3 1fio_A SSO1 protein; four heli 100.0 1.2E-33 4.2E-38 241.5 20.1 193 32-238 3-196 (196)
4 1jth_B Syntaxin 1A; coiled-coi 99.9 4E-27 1.4E-31 171.5 10.0 77 202-278 1-77 (77)
5 3c98_B Syntaxin-1A; protein co 99.9 2.3E-26 7.8E-31 204.6 15.5 241 30-278 39-279 (279)
6 3hd7_B Syntaxin-1A; membrane p 99.9 3.7E-27 1.3E-31 182.7 7.1 82 198-279 8-89 (109)
7 2nps_B Syntaxin 13, vesicle-as 99.9 7.7E-25 2.6E-29 156.9 9.4 70 207-276 2-71 (71)
8 1sfc_B Protein (syntaxin 1A), 99.9 2.5E-24 8.6E-29 158.8 9.7 76 198-273 8-83 (83)
9 3b5n_B Protein SSO1; snare com 99.9 2E-23 6.8E-28 148.6 10.3 69 202-270 1-69 (69)
10 1s94_A S-syntaxin; three helix 99.9 4E-23 1.4E-27 174.1 9.5 147 29-181 34-180 (180)
11 1n7s_B Syntaxin 1A; neuronal s 99.9 4E-22 1.4E-26 141.5 8.3 67 201-267 2-68 (68)
12 1gl2_B Syntaxin 7; membrane pr 99.8 2E-21 6.7E-26 136.6 7.9 63 205-267 3-65 (65)
13 1ez3_A Syntaxin-1A; three heli 99.8 2E-18 6.8E-23 137.1 15.8 120 31-155 5-124 (127)
14 2dnx_A Syntaxin-12; snare, HAB 99.2 7.6E-10 2.6E-14 87.9 16.1 118 28-157 4-122 (130)
15 1hs7_A Syntaxin VAM3; UP-and-D 97.8 0.00029 9.9E-09 52.4 10.8 86 42-155 7-93 (97)
16 2nps_D Syntaxin-6; vesicle fus 96.1 0.046 1.6E-06 39.1 9.0 61 210-270 18-78 (82)
17 1n7s_D SNAP-25A; neuronal snar 96.0 0.073 2.5E-06 36.4 9.3 54 211-264 10-63 (66)
18 1gl2_D Syntaxin 8, vesicle tra 95.5 0.052 1.8E-06 37.0 7.0 54 211-264 9-62 (65)
19 1sfc_D Protein (SNAP-25B), pro 95.5 0.12 4E-06 37.5 9.3 54 211-264 29-82 (87)
20 1nhl_A Synaptosomal-associated 95.2 0.13 4.5E-06 33.7 7.9 43 221-263 10-52 (54)
21 1l4a_D S-SNAP25 fusion protein 94.2 0.14 4.8E-06 37.1 6.7 55 210-264 29-83 (87)
22 3b5n_C Protein transport prote 93.9 0.51 1.7E-05 32.6 8.7 37 232-268 33-69 (70)
23 3b5n_D Protein transport prote 93.8 0.45 1.6E-05 32.3 8.2 53 211-263 10-62 (64)
24 1n7s_C SNAP-25A; neuronal snar 93.3 1.3 4.4E-05 31.3 10.2 50 215-264 27-76 (79)
25 1l4a_C S-SNAP25 fusion protein 90.3 1.3 4.3E-05 31.7 7.3 35 228-262 44-78 (83)
26 3hd7_B Syntaxin-1A; membrane p 89.3 2.4 8.1E-05 31.7 8.6 69 200-268 17-85 (109)
27 3uul_A Utrophin; spectrin repe 82.7 12 0.0004 27.2 10.5 95 8-102 13-109 (118)
28 3uun_A Dystrophin; triple heli 82.0 12 0.00042 27.0 10.3 95 8-102 13-109 (119)
29 3hd7_A Vesicle-associated memb 78.5 4.8 0.00017 29.0 5.8 59 211-272 5-63 (91)
30 3ghg_A Fibrinogen alpha chain; 77.4 50 0.0017 31.3 14.4 98 35-153 61-158 (562)
31 1uii_A Geminin; human, DNA rep 74.2 20 0.0007 25.3 8.5 48 189-236 31-78 (83)
32 2nps_B Syntaxin 13, vesicle-as 71.7 20 0.0007 24.2 8.1 63 205-267 7-69 (71)
33 1n7s_B Syntaxin 1A; neuronal s 70.3 21 0.00073 23.9 8.9 49 210-258 18-66 (68)
34 2wvr_A Geminin; DNA replicatio 69.5 29 0.00099 28.7 8.8 72 184-256 96-167 (209)
35 1gl2_C VTI1B, vesicle transpor 68.3 24 0.0008 23.6 8.4 44 220-263 18-61 (65)
36 3n27_A Fusion glycoprotein F0, 67.3 20 0.00067 25.1 6.3 61 206-268 15-75 (80)
37 3b5n_B Protein SSO1; snare com 66.1 27 0.00092 23.4 8.4 55 206-260 12-66 (69)
38 1gl2_B Syntaxin 7; membrane pr 62.9 30 0.001 22.9 7.6 53 207-259 12-64 (65)
39 1wlq_A Geminin; coiled-coil; 2 57.5 47 0.0016 23.4 8.8 56 190-245 24-79 (83)
40 1jth_B Syntaxin 1A; coiled-coi 57.0 44 0.0015 22.8 9.4 66 203-268 9-74 (77)
41 3ghg_A Fibrinogen alpha chain; 56.6 78 0.0027 30.0 10.3 23 80-102 55-77 (562)
42 1sfc_B Protein (syntaxin 1A), 52.4 56 0.0019 22.7 8.4 61 202-262 19-79 (83)
43 1dn1_B Syntaxin 1A, syntaxin b 47.4 1.2E+02 0.0042 25.8 9.7 63 205-267 201-263 (267)
44 1u4q_A Spectrin alpha chain, b 46.6 1.1E+02 0.0038 25.9 9.5 87 9-97 227-313 (322)
45 1ez3_A Syntaxin-1A; three heli 45.4 75 0.0026 23.4 7.1 107 42-160 9-125 (127)
46 2xhe_B Syntaxin1; exocytosis, 43.1 1.6E+02 0.0053 25.1 9.7 213 42-273 45-272 (279)
47 3efg_A Protein SLYX homolog; x 42.7 81 0.0028 21.8 6.9 46 212-257 15-60 (78)
48 2ke4_A CDC42-interacting prote 39.8 1E+02 0.0036 22.2 6.8 55 35-89 19-73 (98)
49 3c98_B Syntaxin-1A; protein co 39.3 9.9 0.00034 32.0 1.3 222 32-269 48-277 (279)
50 3edv_A Spectrin beta chain, br 39.3 1.5E+02 0.0052 25.1 9.2 74 25-99 246-319 (323)
51 2lf0_A Uncharacterized protein 38.8 1.1E+02 0.0038 23.0 6.7 48 43-90 8-55 (123)
52 1urq_A M-tomosyn isoform; tran 38.4 84 0.0029 20.7 7.2 38 213-250 6-43 (63)
53 1deq_A Fibrinogen (alpha chain 36.7 2.4E+02 0.0083 25.5 12.0 34 31-64 52-86 (390)
54 3kbt_A Beta-I spectrin, spectr 36.3 74 0.0025 27.3 6.6 76 8-85 228-303 (326)
55 1sfc_A VAMP 2, protein (synapt 36.3 1.2E+02 0.004 21.8 8.7 44 211-254 30-73 (96)
56 1m1j_C Fibrinogen gamma chain; 35.9 2.6E+02 0.0088 25.6 14.2 35 29-63 21-56 (409)
57 2l5g_B Putative uncharacterize 33.0 84 0.0029 19.1 4.8 29 34-62 5-33 (42)
58 2beq_A E2 glycoprotein; viral 33.0 74 0.0025 18.9 4.0 31 214-244 2-32 (38)
59 3t98_B Nucleoporin NUP58/NUP45 32.7 1.4E+02 0.0046 21.4 10.2 30 32-61 6-35 (93)
60 2jqq_A Conserved oligomeric go 31.7 56 0.0019 26.8 4.5 46 81-145 130-175 (204)
61 3edv_A Spectrin beta chain, br 29.8 2.5E+02 0.0087 23.7 10.4 74 8-83 124-197 (323)
62 1qu7_A Methyl-accepting chemot 28.8 2.5E+02 0.0084 23.2 10.2 50 208-257 144-193 (227)
63 2c5k_T Syntaxin TLG1, T-snare 27.5 1.7E+02 0.0058 20.9 9.3 85 35-142 7-91 (95)
64 1deq_A Fibrinogen (alpha chain 26.7 3.6E+02 0.012 24.4 11.8 29 34-62 63-91 (390)
65 2nps_A VAMP-4, vesicle-associa 25.5 1.6E+02 0.0053 19.8 6.2 40 213-252 10-49 (74)
66 1yke_B RNA polymerase II holoe 25.4 2.4E+02 0.0082 21.9 10.4 96 3-103 17-117 (151)
67 4dnd_A Syntaxin-10, SYN10; str 24.3 2.3E+02 0.0079 21.4 7.1 65 34-106 27-91 (130)
68 1l4a_A Synaptobrevin; snare, s 24.0 1.8E+02 0.006 19.9 5.7 39 212-250 16-54 (80)
69 2fcw_A Alpha-2-macroglobulin r 23.9 2.2E+02 0.0076 21.0 10.5 68 38-105 24-101 (109)
70 3edu_A Beta-I spectrin, spectr 23.0 1.9E+02 0.0065 23.1 6.5 56 8-65 119-174 (218)
71 1ykh_B RNA polymerase II holoe 22.3 2.6E+02 0.0088 21.2 9.7 67 31-103 50-117 (132)
72 3s4r_A Vimentin; alpha-helix, 22.3 2.1E+02 0.0073 20.2 10.0 27 33-59 18-44 (93)
73 2akf_A Coronin-1A; coiled coil 21.7 1.2E+02 0.0039 16.9 3.6 27 215-248 3-29 (32)
74 1k1f_A Breakpoint cluster regi 21.6 80 0.0027 21.2 3.0 22 38-59 26-47 (72)
75 3swy_A Cyclic nucleotide-gated 21.5 1.5E+02 0.0053 18.3 5.0 24 125-148 11-34 (46)
76 3swf_A CGMP-gated cation chann 21.3 1.9E+02 0.0066 19.8 5.0 25 125-149 13-37 (74)
77 4dnd_A Syntaxin-10, SYN10; str 21.0 2.7E+02 0.0093 21.0 12.5 69 31-103 27-95 (130)
78 3uul_A Utrophin; spectrin repe 21.0 2.2E+02 0.0076 19.9 14.3 24 32-55 3-26 (118)
79 2zxx_A Geminin; coiled-coil, c 20.7 2.2E+02 0.0075 19.7 8.0 34 190-223 20-53 (79)
80 3uun_A Dystrophin; triple heli 20.2 2.3E+02 0.0078 19.8 14.8 60 33-98 4-63 (119)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=8.1e-48 Score=344.29 Aligned_cols=241 Identities=24% Similarity=0.431 Sum_probs=196.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 036284 30 RDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASR 109 (282)
Q Consensus 30 ~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~ 109 (282)
+.+|+.||+.|++|+..|..|..++.+|+.+|.+++..+++ ...++.+|+.++.+|+++++.|+.+|+.|+..+...
T Consensus 27 ~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~--~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~- 103 (267)
T 1dn1_B 27 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE- 103 (267)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 56899999999999999999999999999999887654443 347899999999999999999999999998875431
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHhcCCchHHHHH
Q 036284 110 NIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQK 189 (282)
Q Consensus 110 ~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~sdeeie~~~e~~~~~~~~q~ 189 (282)
+++.+++++.|+|++|+.+|+++|+++|..|+.+|..|+.+++.++.|+| .|.||++|+++++.++++|++..|.+.
T Consensus 104 --~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~-~i~~~~~tdeeie~~ie~g~~~~f~q~ 180 (267)
T 1dn1_B 104 --EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFASG 180 (267)
T ss_dssp --HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHTCSSCTTTTT
T ss_pred --cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hccCCCCCHHHHHHHHhCCcHHHHHHH
Confidence 12234456789999999999999999999999999999999999998754 567999999999999999988877765
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 036284 190 AIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQ 269 (282)
Q Consensus 190 ~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~q 269 (282)
++++. ..++.+|.+|++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||+.|..+|.+|.+||
T Consensus 181 ~l~~~--~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q 258 (267)
T 1dn1_B 181 IIMDS--SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 258 (267)
T ss_dssp CCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------
T ss_pred HHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 3467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceee
Q 036284 270 KGSRKWTCY 278 (282)
Q Consensus 270 k~~Rk~~c~ 278 (282)
+++|||.||
T Consensus 259 ~~~rkk~~~ 267 (267)
T 1dn1_B 259 SKARRKKIM 267 (267)
T ss_dssp ---------
T ss_pred HHhcCcccC
Confidence 999999986
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=2.6e-41 Score=304.21 Aligned_cols=238 Identities=24% Similarity=0.449 Sum_probs=178.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 036284 30 RDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASR 109 (282)
Q Consensus 30 ~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~ 109 (282)
+..++.|+..|++|+..|..|..++..|.++|++.+..+...+...++.+|+.++.+|+++++.|+..|+.|+.......
T Consensus 40 ~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~ 119 (279)
T 2xhe_B 40 EPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQ 119 (279)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56789999999999999999999999999999886655555555589999999999999999999999999998765332
Q ss_pred CCCCCCCCc-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHhcCCchHHH
Q 036284 110 NIPGCGPGS-S-SDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFL 187 (282)
Q Consensus 110 ~~~~~~~~s-~-~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~sdeeie~~~e~~~~~~~~ 187 (282)
..+++.+++ + +.|++++++.+|+++|+++|..|+.+|..|...++.++.| ++.+.||.+++++++.++++|++..|.
T Consensus 120 ~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R-~~~i~~~~~~~ee~~~~~e~g~~~~f~ 198 (279)
T 2xhe_B 120 QEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVAR-QCRVVEPSLSDDAIQKVIEHGTEGIFS 198 (279)
T ss_dssp HHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-SCCSSCCCCSSTTHHHHHHHC------
T ss_pred hcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHhCCchHHHH
Confidence 111222232 3 6699999999999999999999999999998888887765 556778888999999999988776666
Q ss_pred HHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 036284 188 QKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARE 267 (282)
Q Consensus 188 q~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 267 (282)
+ .. ...+...+.+|++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||+.|..+|.+|.+
T Consensus 199 q--~~---~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~ 273 (279)
T 2xhe_B 199 G--MR---LEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARH 273 (279)
T ss_dssp ----------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------
T ss_pred H--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 11 122356778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccc
Q 036284 268 LQKGSR 273 (282)
Q Consensus 268 ~qk~~R 273 (282)
|||++|
T Consensus 274 ~qk~~R 279 (279)
T 2xhe_B 274 YQESAR 279 (279)
T ss_dssp ------
T ss_pred HhHccC
Confidence 999987
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=100.00 E-value=1.2e-33 Score=241.47 Aligned_cols=193 Identities=21% Similarity=0.358 Sum_probs=166.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 036284 32 NLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNI 111 (282)
Q Consensus 32 ~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 111 (282)
.||.||+.|++|+..|..|+.++..|.++|.+++..+++.+...++.+|+.++.+|+.+++.|+..|+.|+...
T Consensus 3 ~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~------ 76 (196)
T 1fio_A 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG------ 76 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 47899999999999999999999999999999877777666678999999999999999999999999998652
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHhcCC-chHHHHHH
Q 036284 112 PGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGE-SESFLQKA 190 (282)
Q Consensus 112 ~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~sdeeie~~~e~~~-~~~~~q~~ 190 (282)
+..|++++++.+|+++|+++|..|+.+|..|..+||+++.|+|.. .+|++++++++.++++|+ +..|.+.+
T Consensus 77 -------~~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i-~~~~~~~~e~~~~~~~~~~~~~f~~~~ 148 (196)
T 1fio_A 77 -------IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI-IQPEATEDEVEAAISDVGGQQIFSQAL 148 (196)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCCHHHHHHHTSHHHHHHHHHHHT
T ss_pred -------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHcCCchhHHHHHH
Confidence 124899999999999999999999999999999999999987765 577899999998887543 34444443
Q ss_pred HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036284 191 IQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQG 238 (282)
Q Consensus 191 l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qg 238 (282)
+.+++.+++..++.+|++||++|.+||++|.|||+||.|||+||++||
T Consensus 149 ~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 149 LNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 433445567789999999999999999999999999999999999998
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.94 E-value=4e-27 Score=171.52 Aligned_cols=77 Identities=38% Similarity=0.609 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccceee
Q 036284 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCY 278 (282)
Q Consensus 202 ~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~Rk~~c~ 278 (282)
+|+++++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||++|..+|.+|.+|++++|||+||
T Consensus 1 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999886
No 5
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.94 E-value=2.3e-26 Score=204.63 Aligned_cols=241 Identities=24% Similarity=0.428 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 036284 30 RDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASR 109 (282)
Q Consensus 30 ~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~ 109 (282)
+.+|++||.+|++|...|..|...+.+|..++...+.. +.........++.++.+++.++..++..++.+........
T Consensus 39 ~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~ 116 (279)
T 3c98_B 39 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILAS--PNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE 116 (279)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999876543 3344556778999999999999999999988877654432
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHhcCCchHHHHH
Q 036284 110 NIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQK 189 (282)
Q Consensus 110 ~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~sdeeie~~~e~~~~~~~~q~ 189 (282)
..++.....+.+.+|...|...|..++.+|...+..|...+++.+++. ....++.+++.+.......+....+...
T Consensus 117 ---~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~l-a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (279)
T 3c98_B 117 ---GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQ-LEITGRTTTSEELEDMLESGNPAIFASG 192 (279)
T ss_dssp ---TTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTCCCCHHHHHHHHHSCCTTSSTTT
T ss_pred ---hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCccchHHHHHHHhhhhHHHHHH
Confidence 233455678999999999999999999999999999988888888654 3345666666555444444433333221
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 036284 190 AIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQ 269 (282)
Q Consensus 190 ~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~q 269 (282)
.. .....+...+..+++|+.+|..|+.+|.+|+++|.+|+.+|++||+++|+|++||..+.++|+.|..+|.+|.+|+
T Consensus 193 ~~--~~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q 270 (279)
T 3c98_B 193 II--MDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 270 (279)
T ss_dssp SC--SCSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112345678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceee
Q 036284 270 KGSRKWTCY 278 (282)
Q Consensus 270 k~~Rk~~c~ 278 (282)
+++|||.||
T Consensus 271 ~~~Rkkk~i 279 (279)
T 3c98_B 271 SKARRKKIM 279 (279)
T ss_dssp ---------
T ss_pred HHHhCcCcC
Confidence 999999886
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.94 E-value=3.7e-27 Score=182.70 Aligned_cols=82 Identities=35% Similarity=0.549 Sum_probs=76.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccee
Q 036284 198 QILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTC 277 (282)
Q Consensus 198 ~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~Rk~~c 277 (282)
+++.+++++++||++|.+||++|.||++||.|||.||++||++||+||+||++|.+||++|+.+|.+|.+|||++|||+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred ee
Q 036284 278 YA 279 (282)
Q Consensus 278 ~~ 279 (282)
|+
T Consensus 88 i~ 89 (109)
T 3hd7_B 88 MI 89 (109)
T ss_dssp HH
T ss_pred eh
Confidence 43
No 7
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.92 E-value=7.7e-25 Score=156.88 Aligned_cols=70 Identities=36% Similarity=0.572 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccce
Q 036284 207 QERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWT 276 (282)
Q Consensus 207 ~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~Rk~~ 276 (282)
++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||+.|..+|.+|.+|++++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999985
No 8
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.91 E-value=2.5e-24 Score=158.80 Aligned_cols=76 Identities=38% Similarity=0.604 Sum_probs=70.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccc
Q 036284 198 QILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSR 273 (282)
Q Consensus 198 ~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~R 273 (282)
+++.++.++++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||++|..+|.+|.+|++++|
T Consensus 8 ~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999886
No 9
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.90 E-value=2e-23 Score=148.65 Aligned_cols=69 Identities=30% Similarity=0.466 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036284 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQK 270 (282)
Q Consensus 202 ~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk 270 (282)
+|.++++||++|.+||++|.||++||.||+.||++||++||+||+||+.|..||++|..+|.+|.+|||
T Consensus 1 al~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478899999999999999999999999999999999999999999999999999999999999999986
No 10
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.88 E-value=4e-23 Score=174.14 Aligned_cols=147 Identities=18% Similarity=0.375 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 036284 29 ERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAAS 108 (282)
Q Consensus 29 ~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~ 108 (282)
+..+|+.||++|++|+..|..|..++.+|..+|.+++.. +...+.++.+|+.++.+|+.+++.|+.+|+.|+..+...
T Consensus 34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~--~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 111 (180)
T 1s94_A 34 GGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSA--PQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQE 111 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346799999999999999999999999999999987654 456778899999999999999999999999999877653
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHhcC
Q 036284 109 RNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASG 181 (282)
Q Consensus 109 ~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~sdeeie~~~e~~ 181 (282)
+++++++++.|+|++|+.+|+++|+++|..|+.+|..|+.+||++++| |+.|.||++|+++|+.++++|
T Consensus 112 ---~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~R-q~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 112 ---EHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKR-QMEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp ---C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-------------------------
T ss_pred ---hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHhCc
Confidence 355667788999999999999999999999999999999999999985 566789999999999999876
No 11
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.87 E-value=4e-22 Score=141.52 Aligned_cols=67 Identities=40% Similarity=0.675 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 036284 201 DTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARE 267 (282)
Q Consensus 201 ~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 267 (282)
.+|.++++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||++|..+|.+|.+
T Consensus 2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~k 68 (68)
T 1n7s_B 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 68 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4688999999999999999999999999999999999999999999999999999999999999963
No 12
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.85 E-value=2e-21 Score=136.62 Aligned_cols=63 Identities=25% Similarity=0.607 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 036284 205 EIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARE 267 (282)
Q Consensus 205 ~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 267 (282)
.+++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||++|..+|.+|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999974
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.80 E-value=2e-18 Score=137.15 Aligned_cols=120 Identities=18% Similarity=0.317 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC
Q 036284 31 DNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRN 110 (282)
Q Consensus 31 ~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~ 110 (282)
.+|+.||++|++|+..|..|+.++++|..+|.+++..++ ..+.++.+|+.++.+|+.+++.|+.+|+.|+..+...
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~--~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~-- 80 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN--PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE-- 80 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 569999999999999999999999999999999876554 4667899999999999999999999999999887643
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 111 IPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKE 155 (282)
Q Consensus 111 ~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~ 155 (282)
+++++++++.|+|++|+.+|+++|+++|..|+.+|..|+..++.
T Consensus 81 -~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 81 -EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp -HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999998776555543
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=7.6e-10 Score=87.88 Aligned_cols=118 Identities=13% Similarity=0.190 Sum_probs=100.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 036284 28 RERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAA 107 (282)
Q Consensus 28 ~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~ 107 (282)
+++...++|-..+..|...|..|+.++..|+++.+. ++++.|..+++++|+.+...++.+++.+...|+.|....
T Consensus 4 ~~~~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~---LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~-- 78 (130)
T 2dnx_A 4 GSSGQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQ---LGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLP-- 78 (130)
T ss_dssp CCSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 344556779999999999999999999999998654 788999999999999999999999999999999998631
Q ss_pred hcCCCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 108 SRNIPGCGPGS-SSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETV 157 (282)
Q Consensus 108 ~~~~~~~~~~s-~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~ 157 (282)
.+.+ .+.|.++.+..+|.++|..++..|+.+|..+..+.|..+
T Consensus 79 -------~~~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~ 122 (130)
T 2dnx_A 79 -------LPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESI 122 (130)
T ss_dssp -------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 1223 356889999999999999999999999988877766544
No 15
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=97.79 E-value=0.00029 Score=52.42 Aligned_cols=86 Identities=14% Similarity=0.192 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCchH
Q 036284 42 NVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMD-ADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSS 120 (282)
Q Consensus 42 ~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~-~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~s~~ 120 (282)
+....|..+..+|..|+++..+ +++..|+.+|+.+|+ .++..++.+.+.|. .+..+
T Consensus 7 d~~~li~t~s~niq~l~k~~~q---lGTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l------------------- 63 (97)
T 1hs7_A 7 ELSNLIETFAEQSRVLEKECTK---IGSKRDSKELRYKIETELIPNCTSVRDKIE-SNILI------------------- 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---TTSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHH-------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---hCCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhccc-------------------
Confidence 3444555566666677776654 788999999999999 99999999988887 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 121 DRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKE 155 (282)
Q Consensus 121 ~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~ 155 (282)
.+...|.++|..+...|+.+|..|..+-++
T Consensus 64 -----~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 64 -----HQNGKLSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp -----HHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 146788999999999999999887765543
No 16
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.08 E-value=0.046 Score=39.15 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036284 210 HDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQK 270 (282)
Q Consensus 210 ~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk 270 (282)
.+.+..|..+|..|+.|-.+|..=|..|.++||.++..++.+...+..+..-+.+-.+..+
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~ 78 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTS 78 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4568899999999999999999999999999999999999999999999998887766543
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=95.98 E-value=0.073 Score=36.37 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQE 264 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~k 264 (282)
+.+..|..+|..|+.|-.+|+.=|..|..+||+|+..++.+...+..+...+.+
T Consensus 10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999999998887654
No 18
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.53 E-value=0.052 Score=37.00 Aligned_cols=54 Identities=9% Similarity=0.205 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQE 264 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~k 264 (282)
+.+..|..++..|+.|-.+|..=|..|..+||.|+..++.+...+..+...+.+
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999999888776643
No 19
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.53 E-value=0.12 Score=37.48 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQE 264 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~k 264 (282)
+.+..|...|..|+.|-.+|..=|..|.++||+|+..++.+...+..++..+.+
T Consensus 29 ~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 29 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999999998887654
No 20
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=95.20 E-value=0.13 Score=33.71 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHH
Q 036284 221 LELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQ 263 (282)
Q Consensus 221 ~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~ 263 (282)
.|-.++=......+..|||.|++|+.++..+..++..|.+.|.
T Consensus 10 ~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 10 IESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3444444555667889999999999999999999999998774
No 21
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.24 E-value=0.14 Score=37.09 Aligned_cols=55 Identities=16% Similarity=0.318 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036284 210 HDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQE 264 (282)
Q Consensus 210 ~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~k 264 (282)
.+.+..|...+..|+.|=.+|..=|..|.++||+|+..++.+...+..++..+.+
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999999999999999999999999988877654
No 22
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=93.90 E-value=0.51 Score=32.64 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=31.9
Q ss_pred HHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 036284 232 ALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268 (282)
Q Consensus 232 ~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~ 268 (282)
.++..|||.|++||.|++.+..+...|...|..=..+
T Consensus 33 ~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 33 GMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3567899999999999999999999999988765554
No 23
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.45 Score=32.27 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQ 263 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~ 263 (282)
..+..|...+.-|..|=..|+.=|..|-++||+|+..++.+...+..++.-|.
T Consensus 10 ~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~ 62 (64)
T 3b5n_D 10 RNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45778888999999999999999999999999999999999999998887765
No 24
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=93.29 E-value=1.3 Score=31.31 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036284 215 EIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQE 264 (282)
Q Consensus 215 ~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~k 264 (282)
+-.+-+.|-.++=......++.|||.|++|+.++..+..++..|.+.|..
T Consensus 27 ~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 27 RMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 33334445555556667788999999999999999999999999988853
No 25
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=90.27 E-value=1.3 Score=31.69 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=28.2
Q ss_pred HHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHH
Q 036284 228 LDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQL 262 (282)
Q Consensus 228 ~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL 262 (282)
..-..++..|||.|++||.+++....+...|...|
T Consensus 44 ~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 44 IRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678999999999999999988887776554
No 26
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=89.30 E-value=2.4 Score=31.75 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=58.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 036284 200 LDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268 (282)
Q Consensus 200 ~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~ 268 (282)
+....++..=++.|..|..-..+|+.|..+=+.+|..=..-++....||+.+.....+|...=+++++.
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk 85 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 85 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 344556666778888889999999999999999999999999999999999999999999876555543
No 27
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=82.66 E-value=12 Score=27.22 Aligned_cols=95 Identities=8% Similarity=0.046 Sum_probs=57.5
Q ss_pred hhhhhhhhhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--ChhhHHHHHHHHHHHHH
Q 036284 8 SFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVH--NARTMKELRARMDADVQ 85 (282)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~--~~~~~~~l~~~l~~l~~ 85 (282)
.+..|-..+-..-....|.|+.+..+..-+.....+...|..-...++.+...-...+... ++.+...++.+++.+..
T Consensus 13 el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~ 92 (118)
T 3uul_A 13 EVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNA 92 (118)
T ss_dssp HHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Confidence 4556766553221122233555667788888888899999888888888887766654322 33344556666666655
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036284 86 QVLKRVKIIKGKLEALE 102 (282)
Q Consensus 86 ~i~~~~~~i~~~l~~l~ 102 (282)
.-..+...+..+-..|+
T Consensus 93 rw~~L~~~~~~R~~~L~ 109 (118)
T 3uul_A 93 RWEALRVESMERQSRLH 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555544444443
No 28
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=82.00 E-value=12 Score=27.03 Aligned_cols=95 Identities=8% Similarity=-0.006 Sum_probs=55.2
Q ss_pred hhhhhhhhhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--ChhhHHHHHHHHHHHHH
Q 036284 8 SFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVH--NARTMKELRARMDADVQ 85 (282)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~--~~~~~~~l~~~l~~l~~ 85 (282)
.+..|-..+-..-....|.|..+..+...+.....+...|..-...++.+...-...+... ++.+...++.+++.+..
T Consensus 13 el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~ 92 (119)
T 3uun_A 13 EVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNS 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4556665543221111233455566777888888888888888888888877766654322 33344556666666655
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036284 86 QVLKRVKIIKGKLEALE 102 (282)
Q Consensus 86 ~i~~~~~~i~~~l~~l~ 102 (282)
.-..+...+..+-..|+
T Consensus 93 rw~~L~~~~~~R~~~Le 109 (119)
T 3uun_A 93 RWECLRVASMEKQSNLH 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555544444444444
No 29
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=78.48 E-value=4.8 Score=29.00 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGS 272 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~ 272 (282)
..+.++...+.|+..+..+==.-|-+.||-||.++.-.+.-..... .--..|++-+++.
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~---~F~~~A~~l~rkm 63 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS---QFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4577888888899888888888889999999988877665554333 3333455555443
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.38 E-value=50 Score=31.32 Aligned_cols=98 Identities=10% Similarity=0.157 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCC
Q 036284 35 NFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGC 114 (282)
Q Consensus 35 ~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~ 114 (282)
+|.+.|++|+..+..+.++-..+....+........+.. +..+.-+.+++....++.+|..|+..+..
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~-----q~~dNdNtynE~S~ELRRrIqyLKekVdn------- 128 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFS-----SANNRDNTYNRVSEDLRSRIEVLKRKVIE------- 128 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHH-----HHHHHHHHHHHTTHHHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH-----hhhccchhHHHHHHHHHHHHHHHHHHHHH-------
Confidence 456666666666666666666665554443222211110 11122233444555666666666655431
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 115 GPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEY 153 (282)
Q Consensus 115 ~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~ 153 (282)
.+ .++..|...+.+...+-++++.++-.+.
T Consensus 129 -------Ql--snIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 129 -------KV--QHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp -------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 4456677777777777777777655543
No 31
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=74.23 E-value=20 Score=25.28 Aligned_cols=48 Identities=19% Similarity=0.372 Sum_probs=41.4
Q ss_pred HHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 189 KAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEA 236 (282)
Q Consensus 189 ~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~ 236 (282)
..+.+.++..+..+|.+-+.=|..|..++.-|..|..+..+|..|+..
T Consensus 31 k~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 31 KEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777766667899999999999999999999999999999999864
No 32
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=71.66 E-value=20 Score=24.19 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 036284 205 EIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARE 267 (282)
Q Consensus 205 ~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 267 (282)
+|..=.+.|..|-.-..+|+.|..+=+.+|..=..-|+....||..+...+.+|...-+++++
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk 69 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRK 69 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444455778888888999999999999999998999999999999999999999886655443
No 33
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=70.29 E-value=21 Score=23.86 Aligned_cols=49 Identities=10% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHH
Q 036284 210 HDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRG 258 (282)
Q Consensus 210 ~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g 258 (282)
.+.|..|-.-..+|+.|..+=+.+|..=..-++....||..|...+.+|
T Consensus 18 e~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 18 ENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555555555555555444
No 34
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=69.52 E-value=29 Score=28.67 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHH
Q 036284 184 ESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVR 256 (282)
Q Consensus 184 ~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~ 256 (282)
..+-+ .+.+.++..+..+|.+-+.=|.+|..++.-|..|.++-.+|..|++.=..|.+-|+.=+....++.+
T Consensus 96 e~YWk-~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e 167 (209)
T 2wvr_A 96 SQYWK-EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFE 167 (209)
T ss_dssp TTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 34443 5666666666788888888888888888888888888888888887777776666655554444443
No 35
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=68.33 E-value=24 Score=23.56 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHH
Q 036284 220 LLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQ 263 (282)
Q Consensus 220 i~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~ 263 (282)
+.|--++=.....-+..|+|.|.++...+..+-.++..|...|.
T Consensus 18 ~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 18 ATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 33444444555566789999999999999999999999988775
No 36
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=67.29 E-value=20 Score=25.07 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 036284 206 IQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268 (282)
Q Consensus 206 i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~ 268 (282)
++.-++.|..|-.+...+.-..+-+..-|..+|.+ .|--|...|..+.+....+|.||+..
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 56666777777777777777777777777777776 57778899999999999999998764
No 37
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=66.12 E-value=27 Score=23.44 Aligned_cols=55 Identities=7% Similarity=0.235 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHH
Q 036284 206 IQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTE 260 (282)
Q Consensus 206 i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~ 260 (282)
+..=.+.|..|-.-..+|+.|..+=+.+|..=..-++....||..+...+.+|..
T Consensus 12 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 12 LLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555555566666666666666666666666666666666666666554
No 38
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=62.95 E-value=30 Score=22.91 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHH
Q 036284 207 QERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGT 259 (282)
Q Consensus 207 ~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~ 259 (282)
..=.+.|..|-.-..+|+.|..+=..+|..=..-++....||..+...+.+|.
T Consensus 12 ~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 12 RQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33345555555666666666666666666666666666666666666666553
No 39
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=57.46 E-value=47 Score=23.38 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=37.8
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 036284 190 AIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIE 245 (282)
Q Consensus 190 ~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie 245 (282)
.+.+.++.....+|.+-+.=|+.|..+..-|..|.+.-.+|..|-..=.-|-+-|+
T Consensus 24 ~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~ 79 (83)
T 1wlq_A 24 EVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565555556777777777888887777777777777777777665444444444
No 40
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=56.98 E-value=44 Score=22.84 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 036284 203 ISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268 (282)
Q Consensus 203 l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~ 268 (282)
..+|..=.+.|..|-.-..+|+.|..+=+.+|..=..-++....||..+...+.+|...-+++++.
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk 74 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 344555557777888888888888888888888888888888889999999988888876665543
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.64 E-value=78 Score=30.03 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036284 80 MDADVQQVLKRVKIIKGKLEALE 102 (282)
Q Consensus 80 l~~l~~~i~~~~~~i~~~l~~l~ 102 (282)
|+..-.+++..+.+|+..+++++
T Consensus 55 LdkqErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHH
Confidence 44444444455555555555553
No 42
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=52.39 E-value=56 Score=22.69 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHH
Q 036284 202 TISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQL 262 (282)
Q Consensus 202 ~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL 262 (282)
...++..=.+.|..|-.-..+|+.|..+=+.+|..=..-++....||..+...+.+|...-
T Consensus 19 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555567777788888888888888888888888888888888888888888887643
No 43
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=47.38 E-value=1.2e+02 Score=25.76 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 036284 205 EIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARE 267 (282)
Q Consensus 205 ~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 267 (282)
+|..=.+.|..|..-..+|+.|..+=+.+|..=..-|.....||..|...+.+|...=+++++
T Consensus 201 ~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rk 263 (267)
T 1dn1_B 201 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 263 (267)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444455555555555666665555555555555555555555555555555555444433
No 44
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=46.61 E-value=1.1e+02 Score=25.93 Aligned_cols=87 Identities=10% Similarity=0.124 Sum_probs=50.6
Q ss_pred hhhhhhhhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHH
Q 036284 9 FKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVL 88 (282)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~ 88 (282)
+-.|-..+- ..+...+.|......+..+.....+...|......+..|......+.....+ +...+...++.+...-.
T Consensus 227 ~~~Wl~~~e-~~l~~~~~g~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~-~~~~i~~~~~~l~~rw~ 304 (322)
T 1u4q_A 227 EEAWINEKM-TLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNH-HVENITAKMKGLKGKVS 304 (322)
T ss_dssp HHHHHHHHH-HHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHH
Confidence 555655542 2233334455555667788888888888888888888887777665544433 34445555555444444
Q ss_pred HHHHHHHHH
Q 036284 89 KRVKIIKGK 97 (282)
Q Consensus 89 ~~~~~i~~~ 97 (282)
.+...+..+
T Consensus 305 ~l~~~~~~R 313 (322)
T 1u4q_A 305 DLEKAAAQR 313 (322)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444333333
No 45
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=45.43 E-value=75 Score=23.41 Aligned_cols=107 Identities=13% Similarity=0.168 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCch
Q 036284 42 NVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELR--ARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSS 119 (282)
Q Consensus 42 ~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~--~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~s~ 119 (282)
..=..+..|+..++.|..+.+++..++. ..|. .....+..++..++..|+.....+...+..+.. ..
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~----~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~-------~~ 77 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVEEVKRKHS----AILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ-------SI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 3445667777777777777665433321 1111 012234455566666666666666655543320 00
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh
Q 036284 120 SDRTR-----TSVVSGLGKKLKDLMDDFQNFRNKMQY---EYKETVERR 160 (282)
Q Consensus 120 ~~rir-----~~q~~~L~~~f~~~~~~f~~~Q~~~~~---~~r~~~~r~ 160 (282)
.+.. ......-......+...|..+=..|+. .||++++++
T Consensus 78 -~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 78 -EQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp -HHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -HHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 011123355666777777777666654 366666643
No 46
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=43.05 E-value=1.6e+02 Score=25.12 Aligned_cols=213 Identities=11% Similarity=0.132 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCchH
Q 036284 42 NVKAEMKTVEKLYKRLQEANEESKIVHNAR-TMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSS 120 (282)
Q Consensus 42 ~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~-~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~s~~ 120 (282)
+.-.....|...|..|.....++..++... ..+. ......+..++..+...|+..++.+...+..+.. ..
T Consensus 45 ~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~-~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~--------~~ 115 (279)
T 2xhe_B 45 DFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVS-KEDRDRLNEKLQDTMARISALGNKIRADLKQIEK--------EN 115 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 345566677777777776665543332110 0011 1112256778888888889888888877765421 00
Q ss_pred HHHHH--------H--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhccCCCCCHHHHHHHHhcCCchHHH
Q 036284 121 DRTRT--------S--VVSGLGKKLKDLMDDFQNFRNKMQYE---YKETVERRYFTVTGQKADEETIENLIASGESESFL 187 (282)
Q Consensus 121 ~rir~--------~--q~~~L~~~f~~~~~~f~~~Q~~~~~~---~r~~~~r~~~~i~~~~~sdeeie~~~e~~~~~~~~ 187 (282)
.+.+. . -..........+..+|+.+-..|+.. |+++++.+..... .++.. ...+...
T Consensus 116 ~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~--~i~~~--------~~~~ee~ 185 (279)
T 2xhe_B 116 KRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQC--RVVEP--------SLSDDAI 185 (279)
T ss_dssp HTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSC--CSSCC--------CCSSTTH
T ss_pred HHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCC--------CCCHHHH
Confidence 00111 0 11234456677778888887777653 4444443322211 11111 0011112
Q ss_pred HHHHHHhhhhhHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 036284 188 QKAIQEQGRGQIL-DTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAR 266 (282)
Q Consensus 188 q~~l~~~~~~~~~-~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 266 (282)
..++......... ......+.-..+|..=+..|..|..-..+|+.|..+=+.||..=..-|+....+|+.+...+.+|.
T Consensus 186 ~~~~e~g~~~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~ 265 (279)
T 2xhe_B 186 QKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKAT 265 (279)
T ss_dssp HHHHHHC-----------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2233221111111 111222333346777788999999999999999999999988878888999999999999999998
Q ss_pred Hhccccc
Q 036284 267 ELQKGSR 273 (282)
Q Consensus 267 k~qk~~R 273 (282)
..=+++.
T Consensus 266 ~~l~kA~ 272 (279)
T 2xhe_B 266 EQVVQAR 272 (279)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 8876664
No 47
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.69 E-value=81 Score=21.78 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHH
Q 036284 212 AIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRR 257 (282)
Q Consensus 212 eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 257 (282)
.|..||..+.-.-+...+|+..|..|+..||+...-+..-.+.+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888999999998888877766655543
No 48
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=39.83 E-value=1e+02 Score=22.23 Aligned_cols=55 Identities=7% Similarity=0.137 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHH
Q 036284 35 NFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLK 89 (282)
Q Consensus 35 ~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~ 89 (282)
.....+.++..+|.+-...-+.|.+++.-+.......|...+..+|+.....|..
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~ 73 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIER 73 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHH
Confidence 5788888899898888888888888776554332222333444455555444443
No 49
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=39.30 E-value=9.9 Score=32.04 Aligned_cols=222 Identities=12% Similarity=0.129 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 036284 32 NLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNI 111 (282)
Q Consensus 32 ~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 111 (282)
..+..-..+..|...+..+......+..-... ..........+...+..+...+......+....+....... .
T Consensus 48 ~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~----~ 121 (279)
T 3c98_B 48 QVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR----S 121 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----c
Confidence 34566677777777777777666554321110 00111223344455666666666666666554444332110 0
Q ss_pred CCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhccCCCCCHHHHHHHHhcCCc
Q 036284 112 PGCGPGSS-SDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERR-------YFTVTGQKADEETIENLIASGES 183 (282)
Q Consensus 112 ~~~~~~s~-~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~-------~~~i~~~~~sdeeie~~~e~~~~ 183 (282)
......-. ....-...+.....+|...-..|......-........... ...+.+ .+......+ ..+..
T Consensus 122 ~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~ 198 (279)
T 3c98_B 122 SADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESG--NPAIFASGI-IMDSS 198 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSC--CTTSSTTTS-CSCSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHhh--hhHHHHHHH-HHHHH
Confidence 00000000 11112223455667788888888754322222222222110 000111 011001111 11111
Q ss_pred hHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHH
Q 036284 184 ESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQ 263 (282)
Q Consensus 184 ~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~ 263 (282)
. ....+ ..+......+..=...|..|...+.+|..+..+-+..+.+=...|+.+-.+|..+...+.+|...-.
T Consensus 199 ~--~~~~~-----~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~ 271 (279)
T 3c98_B 199 I--SKQAL-----SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 271 (279)
T ss_dssp S--TTHHH-----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------
T ss_pred H--HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11011 0112233334444466777777788888888888888877777788888899999999999988877
Q ss_pred HHHHhc
Q 036284 264 EARELQ 269 (282)
Q Consensus 264 kA~k~q 269 (282)
++++.+
T Consensus 272 ~~Rkkk 277 (279)
T 3c98_B 272 KARRKK 277 (279)
T ss_dssp ------
T ss_pred HHhCcC
Confidence 776653
No 50
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=39.25 E-value=1.5e+02 Score=25.14 Aligned_cols=74 Identities=11% Similarity=0.185 Sum_probs=45.3
Q ss_pred ccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 25 EAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLE 99 (282)
Q Consensus 25 ~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~ 99 (282)
+.|+.+..++..+.....++..|..-...+..+...-...+..+. .....++.+|+.+...-..+......+-+
T Consensus 246 ~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~-~~~~~i~~~l~~L~~~w~~l~~~w~~R~~ 319 (323)
T 3edv_A 246 EKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKH-YASEEIKEKLLQLTEKRKEMIDKWEDRWE 319 (323)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556677777888888888877888877776665444333 23456666666666555555554444433
No 51
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=38.79 E-value=1.1e+02 Score=22.96 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHH
Q 036284 43 VKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKR 90 (282)
Q Consensus 43 I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~ 90 (282)
.+.+|..+++.++.++.........++..--.....+++.++.+|.++
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 55 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARL 55 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777655444333444443444445555555544443
No 52
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=38.43 E-value=84 Score=20.75 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHH
Q 036284 213 IKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAH 250 (282)
Q Consensus 213 I~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~ 250 (282)
|..+...+.++..++.+=-.-|.+-|+-|+.++.-.+.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777766555
No 53
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.71 E-value=2.4e+02 Score=25.53 Aligned_cols=34 Identities=9% Similarity=0.294 Sum_probs=20.0
Q ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 31 DNLDNFFEDV-ENVKAEMKTVEKLYKRLQEANEES 64 (282)
Q Consensus 31 ~~l~~f~~~v-~~I~~~i~~i~~~i~~L~~l~~~~ 64 (282)
.-|..-+.+. ..+...|..|+..+..+.+.++.+
T Consensus 52 CrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~ 86 (390)
T 1deq_A 52 CRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDS 86 (390)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 3455444333 456667777777777776666543
No 54
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=36.33 E-value=74 Score=27.25 Aligned_cols=76 Identities=7% Similarity=0.132 Sum_probs=31.0
Q ss_pred hhhhhhhhhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHH
Q 036284 8 SFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQ 85 (282)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 85 (282)
.+..|-..+... +++ +-|.....++..+.....+...|..+...|+.|.....+....+.+.+...+...++.+..
T Consensus 228 e~~~Wl~ek~~~-L~~-~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~ 303 (326)
T 3kbt_A 228 EILGLIDEKHRE-LPE-DVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSA 303 (326)
T ss_dssp HHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-Ccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHH
Confidence 345565554432 232 2233445666777777777788888888888887766665443322333444444444443
No 55
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=36.29 E-value=1.2e+02 Score=21.76 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHH
Q 036284 211 DAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSF 254 (282)
Q Consensus 211 ~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~ 254 (282)
..|.+|...|.|+..+..+==.-|.+.||-||.++.-.+.-...
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~ 73 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45778888888888888888888999999999887766554443
No 56
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.86 E-value=2.6e+02 Score=25.58 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 036284 29 ERDNLDNFFEDVEN-VKAEMKTVEKLYKRLQEANEE 63 (282)
Q Consensus 29 ~~~~l~~f~~~v~~-I~~~i~~i~~~i~~L~~l~~~ 63 (282)
+...+.+|+...+. |...|..|+..+++|+.+...
T Consensus 21 T~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~ 56 (409)
T 1m1j_C 21 TTCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGS 56 (409)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 46779999988887 999999988888888776544
No 57
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.05 E-value=84 Score=19.10 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 34 DNFFEDVENVKAEMKTVEKLYKRLQEANE 62 (282)
Q Consensus 34 ~~f~~~v~~I~~~i~~i~~~i~~L~~l~~ 62 (282)
++.++.++.|...|...+..|.+++....
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888887777766543
No 58
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=33.02 E-value=74 Score=18.94 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q 036284 214 KEIEKNLLELHQVFLDMAALVEAQGHQLNDI 244 (282)
Q Consensus 214 ~~le~si~eL~~lF~dla~LV~~Qge~id~I 244 (282)
..+..++..++.-+..+...|.+||..+...
T Consensus 2 ~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~L 32 (38)
T 2beq_A 2 SQIQESLTTTSTALGKLQDVVNQNAQALNTL 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4566777888888888888888998887654
No 59
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=32.67 E-value=1.4e+02 Score=21.41 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 32 NLDNFFEDVENVKAEMKTVEKLYKRLQEAN 61 (282)
Q Consensus 32 ~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~ 61 (282)
|.+=|...|++....|..++..|++|+..-
T Consensus 6 P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L 35 (93)
T 3t98_B 6 PADYFRVLVQQFEVQLQQYRQQIEELENHL 35 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467789999999999999999998763
No 60
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=31.71 E-value=56 Score=26.79 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 81 DADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNF 145 (282)
Q Consensus 81 ~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~ 145 (282)
..++.++-+++..+...+..++. -+||-. ..+++.|+.+++.|+-.
T Consensus 130 ~~l~~qL~~L~~~~~~ll~~l~d------------l~Sp~l-------~h~RN~yq~i~q~Fqi~ 175 (204)
T 2jqq_A 130 SGLIEQLYKLITASRRILESCAD------------SNSPYI-------HHLRNDYQDLLQEFQIS 175 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS------------CCCHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------------cCcHHH-------HHHHHHHHHHHHHHHHH
Confidence 34555556666666666666642 235532 22346777888888765
No 61
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=29.78 E-value=2.5e+02 Score=23.67 Aligned_cols=74 Identities=11% Similarity=0.191 Sum_probs=37.8
Q ss_pred hhhhhhhhhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 036284 8 SFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDAD 83 (282)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l 83 (282)
.|..|-..+... +++ +-|+....+...+..-.....+|......++.|...-.+......+.+...+...++.+
T Consensus 124 e~~~Wl~~k~~~-l~~-~~~~d~~~v~~l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l 197 (323)
T 3edv_A 124 EIFGRIQDKHKK-LPE-ELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEV 197 (323)
T ss_dssp HHHHHHHHHHHT-CCC-CCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-ccc-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 345566655433 332 22333334556666667777777777777777766555543333222333334333333
No 62
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=28.81 E-value=2.5e+02 Score=23.18 Aligned_cols=50 Identities=12% Similarity=0.272 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHH
Q 036284 208 ERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRR 257 (282)
Q Consensus 208 ~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 257 (282)
.=...+..|...+.++..++.+++..+.+|...++.|-.++.....-++.
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 193 (227)
T 1qu7_A 144 SAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 193 (227)
T ss_dssp HHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455777888888888899999999999988888888777665544443
No 63
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=27.53 E-value=1.7e+02 Score=20.89 Aligned_cols=85 Identities=13% Similarity=0.251 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCC
Q 036284 35 NFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGC 114 (282)
Q Consensus 35 ~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~ 114 (282)
-|+.-..++...|..+...+.. . ...++ ...+..|....+++......+...|.-+++.
T Consensus 7 PF~~V~~D~~~ql~~l~~~~~~------~-~~~~~----~~~~~El~~~l~el~e~l~DL~~SI~i~e~~---------- 65 (95)
T 2c5k_T 7 PFQQVVKDTKEQLNRINNYITR------H-NTAGD----DDQEEEIQDILKDVEETIVDLDRSIIVMKRD---------- 65 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------T-CCC------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHH------c-cCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------
Confidence 4888889999888887776443 1 11111 1223344444444444555555555544421
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 115 GPGSSSDRTRTSVVSGLGKKLKDLMDDF 142 (282)
Q Consensus 115 ~~~s~~~rir~~q~~~L~~~f~~~~~~f 142 (282)
...+..-|+..+..+...+..+-..+
T Consensus 66 --~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 66 --ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp --TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223345667777777766554444
No 64
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.70 E-value=3.6e+02 Score=24.41 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 34 DNFFEDVENVKAEMKTVEKLYKRLQEANE 62 (282)
Q Consensus 34 ~~f~~~v~~I~~~i~~i~~~i~~L~~l~~ 62 (282)
.+|-..|++++..|..+.+.-..+..+..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~ 91 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTK 91 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34666666666666666665555555443
No 65
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=25.53 E-value=1.6e+02 Score=19.83 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHH
Q 036284 213 IKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHAN 252 (282)
Q Consensus 213 I~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~ 252 (282)
|.+|...+.|+..+..+==.-|-+.||-||.+..-.+.-.
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~ 49 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLS 49 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4556666777777776666677788888887766555433
No 66
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.44 E-value=2.4e+02 Score=21.94 Aligned_cols=96 Identities=6% Similarity=0.045 Sum_probs=42.1
Q ss_pred cccchhhhhhhhhhhhccc-cccccCc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH
Q 036284 3 DLFSNSFKKYTDLKTQAYQ-DDMEAGR----ERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELR 77 (282)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~ 77 (282)
+.|.|++---..-+|-... |+.|... .+.+...|-..+.++..+|-.-.+.|+.| -.. +..... ....-.
T Consensus 17 ~~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~L---Ids-LPg~~~-seeeQ~ 91 (151)
T 1yke_B 17 EQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKL---IDS-LPGVDV-SAEEQL 91 (151)
T ss_dssp HHTTTTHHHHHHTTGGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-CTTSSS-CHHHHH
T ss_pred HHHHHHHHHHhcCCCcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHh-CCCCCC-CHHHHH
Confidence 3455555433333444444 3333211 12445678888888876665544444433 221 222111 112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 78 ARMDADVQQVLKRVKIIKGKLEALER 103 (282)
Q Consensus 78 ~~l~~l~~~i~~~~~~i~~~l~~l~~ 103 (282)
..|..|-.+...........+++-+.
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ 117 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEK 117 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444433
No 67
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.29 E-value=2.3e+02 Score=21.38 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 036284 34 DNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNA 106 (282)
Q Consensus 34 ~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~ 106 (282)
.-||.-.++|...|..++.....-..+.. .++.. -..+++.+..++......|...|++|++.+.
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~----~~~~~----s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQ----ESAAV----GREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999888886666655433221 11110 1234666677777777777777777776654
No 68
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=24.02 E-value=1.8e+02 Score=19.92 Aligned_cols=39 Identities=5% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHH
Q 036284 212 AIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAH 250 (282)
Q Consensus 212 eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~ 250 (282)
.|.+|...+.|+..++.+=-.-|.+.||-||.++.-.+.
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 366677777777777777777788888888887765554
No 69
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=23.87 E-value=2.2e+02 Score=20.98 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036284 38 EDVENVKAEMKTVEKLYKRLQEANEESK----------IVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSN 105 (282)
Q Consensus 38 ~~v~~I~~~i~~i~~~i~~L~~l~~~~~----------~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~ 105 (282)
++.++|+..|..++..+..++=++.+.. ..+...+.+....+...+-..+.++...|+.....|+..+
T Consensus 24 ~ELeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~~rI 101 (109)
T 2fcw_A 24 KELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRI 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678888888887777776655432 1233333344445566666667777777777666666543
No 70
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=22.96 E-value=1.9e+02 Score=23.11 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=25.8
Q ss_pred hhhhhhhhhhhccccccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036284 8 SFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESK 65 (282)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~ 65 (282)
.+..|-..+...- ++.. |+....++..+..-..+..+|..+...+..|...-.+..
T Consensus 119 e~~~Wl~ek~~~l-~~~~-g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~ 174 (218)
T 3edu_A 119 EILGLIDEKHREL-PEDV-GLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQ 174 (218)
T ss_dssp HHHHHHHHHHHCC-C--------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655544332 3222 344455566666666677777777777777766655543
No 71
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.28 E-value=2.6e+02 Score=21.16 Aligned_cols=67 Identities=7% Similarity=0.140 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 31 DNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNAR-TMKELRARMDADVQQVLKRVKIIKGKLEALER 103 (282)
Q Consensus 31 ~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~-~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~ 103 (282)
.+...|-..+.++..+|-.-.+.|+.| -. .++... ....-...|..|-.+...........++.-+.
T Consensus 50 ~~~~~f~~~~~ela~dli~k~kqIe~L---Id---sLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ 117 (132)
T 1ykh_B 50 VPPEEFSNTIDELSTDIILKTRQINKL---ID---SLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEK 117 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH---HH---hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888877765544444433 22 222222 12222345666666666666666655555443
No 72
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.26 E-value=2.1e+02 Score=20.22 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 33 LDNFFEDVENVKAEMKTVEKLYKRLQE 59 (282)
Q Consensus 33 l~~f~~~v~~I~~~i~~i~~~i~~L~~ 59 (282)
+..|++.|..+...-..+...+..+..
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777887777777777666665543
No 73
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.66 E-value=1.2e+02 Score=16.91 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhH
Q 036284 215 EIEKNLLELHQVFLDMAALVEAQGHQLNDIESHV 248 (282)
Q Consensus 215 ~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv 248 (282)
+||..+..|+.+.++| .+-+|+.|..|
T Consensus 3 rlee~~r~l~~ivq~l-------q~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKL-------QERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3455555554444444 34456666554
No 74
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=21.63 E-value=80 Score=21.19 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036284 38 EDVENVKAEMKTVEKLYKRLQE 59 (282)
Q Consensus 38 ~~v~~I~~~i~~i~~~i~~L~~ 59 (282)
..|.+|...|.+.+..|.+|+.
T Consensus 26 ~~vgdiEqeLe~Ck~sIrrLE~ 47 (72)
T 1k1f_A 26 RSVGDIEQELERAKASIRRLEQ 47 (72)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554
No 75
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=21.53 E-value=1.5e+02 Score=18.30 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 125 TSVVSGLGKKLKDLMDDFQNFRNK 148 (282)
Q Consensus 125 ~~q~~~L~~~f~~~~~~f~~~Q~~ 148 (282)
.+.+..|..+|..++.+|...|..
T Consensus 11 e~~ld~LqTr~ArLlae~~ssq~K 34 (46)
T 3swy_A 11 GSSLDTLQTRFARLLAEYNATQMK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999998654
No 76
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.28 E-value=1.9e+02 Score=19.76 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 125 TSVVSGLGKKLKDLMDDFQNFRNKM 149 (282)
Q Consensus 125 ~~q~~~L~~~f~~~~~~f~~~Q~~~ 149 (282)
.+.+..|..+|..++.+|...|...
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788899999999999987653
No 77
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.04 E-value=2.7e+02 Score=20.98 Aligned_cols=69 Identities=6% Similarity=0.076 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 31 DNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALER 103 (282)
Q Consensus 31 ~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~ 103 (282)
+|.-.+-++|.+-=..+..+-....+|...-... +..+-..++++|......+......+...|.-.++
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~----s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~ 95 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAV----GREELDWTTNELRNGLRSIEWDLEDLEETIGIVEA 95 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555554443332210 11122333444444445555555555555555554
No 78
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=20.95 E-value=2.2e+02 Score=19.91 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 32 NLDNFFEDVENVKAEMKTVEKLYK 55 (282)
Q Consensus 32 ~l~~f~~~v~~I~~~i~~i~~~i~ 55 (282)
.+..|...++++..+|...+..+.
T Consensus 3 ~L~~f~~~l~el~~WL~e~e~~l~ 26 (118)
T 3uul_A 3 DLDSYQIALEEVLTWLLSAEDTFQ 26 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999887665543
No 79
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.68 E-value=2.2e+02 Score=19.75 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=16.5
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 036284 190 AIQEQGRGQILDTISEIQERHDAIKEIEKNLLEL 223 (282)
Q Consensus 190 ~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL 223 (282)
.+.+.++.....+|.+-+.=|.+|..+...|..|
T Consensus 20 ~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 20 EVAEQRRKALYEALKENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555444444333
No 80
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=20.22 E-value=2.3e+02 Score=19.78 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284 33 LDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKL 98 (282)
Q Consensus 33 l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l 98 (282)
+..|...++++..+|...+..+.... ....++.....+-.+...+..++...-..+..-.
T Consensus 4 L~~F~~~l~el~~WL~~~e~~l~~~~------~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~ 63 (119)
T 3uun_A 4 LDRYQTALEEVLSWLLSAEDTLQAQG------EISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNIL 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------SCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC------CCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67899999999999988766554321 1112233333333444455555555444444333
Done!