BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036286
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 162/327 (49%), Gaps = 22/327 (6%)
Query: 29 LPDSYAWTQRDEYPIGDSLISES------VPVIDLND---------PNALTLVGNACKTW 73
+P Y + + I D + E VP IDL + N + + A W
Sbjct: 18 IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 77
Query: 74 GAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAA--RSPDGVAGYGLARISSFFSKL 131
G +INHGIP +L++ + FSL ++K K A ++ + GYG ++ +L
Sbjct: 78 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 132 MWSEGFTVAGSPLDHFR-KLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQD 190
W + F P + +WP+ + + EY + ++ LA ++ + S+G+ +
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL--SVGLGLEP 195
Query: 191 VKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEG 250
+ G + +++NYYP CP P+ A+G+ HTD + LT + N GLQ+ EG
Sbjct: 196 DRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEG 255
Query: 251 TGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPS-SVQI 309
WV +P ++V+++GD + ILSNG Y S+LHR +VN+ K R+S A PP + +
Sbjct: 256 K-WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVL 314
Query: 310 SPLQKLVGPSHPPLYRPITWSEYLDTK 336
PL ++V P + P T++++++ K
Sbjct: 315 KPLPEMVSVESPAKFPPRTFAQHIEHK 341
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 162/327 (49%), Gaps = 22/327 (6%)
Query: 29 LPDSYAWTQRDEYPIGDSLISES------VPVIDLND---------PNALTLVGNACKTW 73
+P Y + + I D + E VP IDL + N + + A W
Sbjct: 17 IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 76
Query: 74 GAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAA--RSPDGVAGYGLARISSFFSKL 131
G +INHGIP +L++ + FSL ++K K A ++ + GYG ++ +L
Sbjct: 77 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 136
Query: 132 MWSEGFTVAGSPLDHFR-KLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQD 190
W + F P + +WP+ + + EY + ++ LA ++ + S+G+ +
Sbjct: 137 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL--SVGLGLEP 194
Query: 191 VKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEG 250
+ G + +++NYYP CP P+ A+G+ HTD + LT + N GLQ+ EG
Sbjct: 195 DRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEG 254
Query: 251 TGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPS-SVQI 309
WV +P ++V+++GD + ILSNG Y S+LHR +VN+ K R+S A PP + +
Sbjct: 255 K-WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVL 313
Query: 310 SPLQKLVGPSHPPLYRPITWSEYLDTK 336
PL ++V P + P T++++++ K
Sbjct: 314 KPLPEMVSVESPAKFPPRTFAQHIEHK 340
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 158/327 (48%), Gaps = 22/327 (6%)
Query: 29 LPDSYAWTQRDEYPIGDSLISES------VPVIDLND---------PNALTLVGNACKTW 73
+P Y + + I D + E VP IDL + N + + A W
Sbjct: 18 IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 77
Query: 74 GAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAA--RSPDGVAGYGLARISSFFSKL 131
G +INHGIP +L + + FSL ++K K A ++ + GYG ++ +L
Sbjct: 78 GVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 132 MWSEGFTVAGSPLDHFR-KLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQD 190
W + F P + +WP+ + + EY + ++ LA ++ + S+G+ +
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL--SVGLGLEP 195
Query: 191 VKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEG 250
+ G + ++NYYP CP P+ A+G+ HTD + LT + N GLQ+ EG
Sbjct: 196 DRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLFYEG 255
Query: 251 TGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPS-SVQI 309
WV +P ++V ++GD + ILSNG Y S+LHR +VN+ K R+S A PP + +
Sbjct: 256 K-WVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVL 314
Query: 310 SPLQKLVGPSHPPLYRPITWSEYLDTK 336
PL + V P + P T++++++ K
Sbjct: 315 KPLPEXVSVESPAKFPPRTFAQHIEHK 341
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 145/276 (52%), Gaps = 20/276 (7%)
Query: 50 ESVPVIDLNDPNALT------LVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPT 103
E+ P+I L+ N + + +AC+ WG F+++NHGIP + D E ++ +
Sbjct: 2 ENFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 104 QQKLKAARSPDGVAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIE 163
+Q+ K VA L + + + W F + P+ + ++ P ++ ++
Sbjct: 62 EQRFKEL-----VASKALEGVQAEVTDXDWESTFFLKHLPISNISEV-PDLDEEYREVXR 115
Query: 164 EYEQEMKKLAGRLMWLVLGSLGITTQDVKWA--GPKGHFTDASAALQLNYYPACPDPDRA 221
++ + ++KLA L+ L+ +LG+ +K A G KG + +++ YP CP PD
Sbjct: 116 DFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKG----PNFGTKVSNYPPCPKPDLI 171
Query: 222 MGLAEHTDSTLLTILYQNN-TSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYP 280
GL HTD+ + +L+Q++ SGLQ+LK+G W+ VPP ++VVN+GD + +++NG Y
Sbjct: 172 KGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ-WIDVPPXRHSIVVNLGDQLEVITNGKYK 230
Query: 281 SVLHRAVVNRAKHRLSIAYLYGPPSSVQISPLQKLV 316
SV HR + + R S+A Y P S I P LV
Sbjct: 231 SVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALV 266
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 118/294 (40%), Gaps = 23/294 (7%)
Query: 66 VGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDGVAGY-----G 120
+G + + +G + ++ + +D ++++ F+LP + K + A G GY
Sbjct: 26 LGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVE 85
Query: 121 LARISSFFS-KLMWSEGFTVAGSPLDHFR-----KLWPQDFCKHCDIIEEYEQEMKKLAG 174
A+ + + K W G + P FR +WP + + + G
Sbjct: 86 TAKGADHYDLKEFWHXGRDL--PPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGG 143
Query: 175 RLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLT 234
+++ + L + K D ++ L+L +YP P + H D +T
Sbjct: 144 KVLEAIATYLKLERDFFKPT-----VQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTIT 198
Query: 235 ILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAV----VNR 290
+L GL+VL W+ + P PG LV+N+GD + L+N PS +HR V R
Sbjct: 199 LLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERR 258
Query: 291 AKHRLSIAYLYGPPSSVQISPLQKLVGPSHPPLY-RPITWSEYLDTKAKHFNKA 343
R S + S +I LQ V +P Y IT E+L + + A
Sbjct: 259 GVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLREIKLA 312
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 209 LNYYPACPDPDR-AMGLAEHTDSTLLTILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNV 267
L+Y P D + A+ A H D L+T+L N GLQV + W+ VP G +++N+
Sbjct: 155 LHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINI 214
Query: 268 GDLIHILSNGSYPSVLHRAV----VNRAKHRLSIAYLYGPPSSVQIS 310
GD + S+G +PS HR + ++ K R+S+ P SV +S
Sbjct: 215 GDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 131/327 (40%), Gaps = 51/327 (15%)
Query: 46 SLISESVPVIDLN----DPNALTL-----VGNACKTWGAFQVINHGIPTNLLDNTESTSR 96
S+ +VP ID++ D A + + A + G F +NHGI L ++ T
Sbjct: 3 SVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRL--SQKTKE 60
Query: 97 SLFSLPTQQKLKAA------RSPDGV-AGY-----GLARISSFFSKLMWSEGFT-----V 139
S+ ++K A D V AGY G + SF + FT +
Sbjct: 61 FHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESF---CYLNPNFTPDHPRI 117
Query: 140 AGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLG-SLGITTQDVKWAGPKG 198
H +WP D KH + EQ + G L+ G +L + ++ +A
Sbjct: 118 QAKTPTHEVNVWP-DETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFAR--- 173
Query: 199 HFT--DASAALQLNYYPAC-PDPDRAMGLAE---------HTDSTLLTILYQNNTSGLQV 246
HF D A++ L YP P P+ A+ A H D +L+T+LYQ+N LQV
Sbjct: 174 HFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV 233
Query: 247 LKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSS 306
+ G+ + ++N G + L+N Y + +HR A+ R S+ +
Sbjct: 234 -ETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYD 291
Query: 307 VQISPLQKLVGPSHPPLYRPITWSEYL 333
I P P+ P+++ +YL
Sbjct: 292 SVIDPFDPR-EPNGKSDREPLSYGDYL 317
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 131/327 (40%), Gaps = 51/327 (15%)
Query: 46 SLISESVPVIDLN----DPNALTL-----VGNACKTWGAFQVINHGIPTNLLDNTESTSR 96
S+ +VP ID++ D A + + A + G F +NHGI L ++ T
Sbjct: 3 SVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRL--SQKTKE 60
Query: 97 SLFSLPTQQKLKAA------RSPDGV-AGY-----GLARISSFFSKLMWSEGFT-----V 139
S+ ++K A D V AGY G + SF + FT +
Sbjct: 61 FHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESF---CYLNPNFTPDHPRI 117
Query: 140 AGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLG-SLGITTQDVKWAGPKG 198
H +WP D KH + EQ + G L+ G +L + ++ +A
Sbjct: 118 QAKTPTHEVNVWP-DETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFAR--- 173
Query: 199 HFT--DASAALQLNYYPAC-PDPDRAMGLAE---------HTDSTLLTILYQNNTSGLQV 246
HF D A++ L YP P P+ A+ A H D +L+T+LYQ+N LQV
Sbjct: 174 HFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV 233
Query: 247 LKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSS 306
+ G+ + ++N G + L+N Y + +HR A+ R S+ +
Sbjct: 234 -ETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYD 291
Query: 307 VQISPLQKLVGPSHPPLYRPITWSEYL 333
I P P+ P+++ +YL
Sbjct: 292 SVIDPFDPR-EPNGKSDREPLSYGDYL 317
>pdb|1LF1|A Chain A, Crystal Structure Of Cel5 From Alkalophilic Bacillus Sp
Length = 308
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 49 SESVPVIDLNDPNALTLVGNACKTWGAFQVINHGIPTNLLD 89
E +PVI NDPN + +VG TW Q ++H L D
Sbjct: 156 EEVIPVIRDNDPNNIVIVGTG--TWS--QDVHHAADNQLAD 192
>pdb|2LUZ|A Chain A, Solution Nmr Structure Of Calu16 From Micromonospora
Echinospora, Northeast Structural Genomics Consortium
(Nesg) Target Mir12
Length = 192
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 212 YPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKE-GTGWVMVPPIPGALVVNVGDL 270
Y PD + + L+E D TLL + ++ T+ Q+L E G GW M G + GDL
Sbjct: 99 YEGKPDSEVELRLSEEGDGTLLEL--EHATTSEQMLVEVGVGWEMALDFLGMFI--RGDL 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,405,154
Number of Sequences: 62578
Number of extensions: 481232
Number of successful extensions: 967
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 23
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)