BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036287
(488 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 556 bits (1433), Expect = e-157, Method: Compositional matrix adjust.
Identities = 253/393 (64%), Positives = 325/393 (82%), Gaps = 1/393 (0%)
Query: 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVE 62
REIH QVLKLG S+RS LK++E+YGK GE +A ++FDEMP+ D VA+TVMINCY E
Sbjct: 143 REIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPD-RDHVAATVMINCYSE 201
Query: 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122
G ++ A E+F VK+KDTVCWTAMIDGLVRN EM +AL+LFREMQ +NV NE T VCV
Sbjct: 202 CGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCV 261
Query: 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV 182
LSACS LGALELGRW+HS++ R++L++ VG ALINMYSRCGDI++A +VF M+++DV
Sbjct: 262 LSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDV 321
Query: 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQS 242
+YN++I+GLAMHG S+EA+ FR+M+N+G RP +VT V +LNACSHGGL+D+G E+F S
Sbjct: 322 ISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNS 381
Query: 243 MTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQ 302
M R + +EPQIEHYGCIVDLL RVGR EEAY FI N+ I PDHIMLG+LLSACKIHG ++
Sbjct: 382 MKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNME 441
Query: 303 LGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVN 362
LGE+IAKRL + + DSGTYVLLSN YASSGKWKE+ +IR M+++G++KEPGCS+IEV+
Sbjct: 442 LGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVD 501
Query: 363 NEIHEFILGDIRHPQREQIYKKMQELKQIVKLE 395
N+IHEF++GDI HP +E IY+++QEL +I++ +
Sbjct: 502 NQIHEFLVGDIAHPHKEAIYQRLQELNRILRFK 534
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 37/265 (13%)
Query: 66 VENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA 125
V+ A++VFS V + +TAMIDG V +G A + L+ M ++V P+ I VL A
Sbjct: 77 VDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKA 136
Query: 126 CSQLGALELGRWIHSY-------------------------------MGKHRIDLNHIVG 154
C L++ R IH+ M D +H+
Sbjct: 137 CD----LKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAA 192
Query: 155 GALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIR 214
+IN YS CG I +AL++F+++K +D + ++I GL + +A+E+FREM + +
Sbjct: 193 TVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVS 252
Query: 215 PTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYD 274
+ T V VL+ACS G ++LG + S + +E ++++ SR G EA
Sbjct: 253 ANEFTAVCVLSACSDLGALELGRWV-HSFVENQRMELSNFVGNALINMYSRCGDINEARR 311
Query: 275 FITNMKIAPDHIMLGSLLSACKIHG 299
M+ D I +++S +HG
Sbjct: 312 VFRVMR-DKDVISYNTMISGLAMHG 335
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 36/253 (14%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR +H V + + L+ +Y +CG+ +A ++F M +
Sbjct: 274 GRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRD--------------- 318
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
KD + + MI GL +G A++ FR+M RPN+VT+V
Sbjct: 319 -----------------KDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVA 361
Query: 122 VLSACSQLGALELGRWIHSYMGK-HRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK-E 179
+L+ACS G L++G + + M + ++ G ++++ R G +++A + E + E
Sbjct: 362 LLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIE 421
Query: 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239
D +L++ +HG ++E E + + + P T+V + N + G EI
Sbjct: 422 PDHIMLGTLLSACKIHG-NMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEI 480
Query: 240 FQSMTRDYGIEPQ 252
+SM RD GIE +
Sbjct: 481 RESM-RDSGIEKE 492
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 15/147 (10%)
Query: 118 TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177
T++ VL +C + + IH+ + + D + V LI + S +D A VF +
Sbjct: 31 TLISVLRSCKNIAHVP---SIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYV 87
Query: 178 KERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS-------HG 230
+V Y ++I G GRS + V ++ MI+ + P VL AC H
Sbjct: 88 SNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHA 147
Query: 231 GLVDLGFEIFQSMTRDYGIEPQIEHYG 257
++ LGF +R G++ +E YG
Sbjct: 148 QVLKLGF----GSSRSVGLK-MMEIYG 169
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/490 (47%), Positives = 338/490 (68%), Gaps = 3/490 (0%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
G+ IH VLK GL + LV++Y K G+ A ++FD MPE +V+ST MI CY
Sbjct: 144 SGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE-RSLVSSTAMITCY 202
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD-NVRPNEVTI 119
+ G VE A +F + +D V W MIDG ++G AL LF+++ + +P+E+T+
Sbjct: 203 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 262
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179
V LSACSQ+GALE GRWIH ++ RI LN V LI+MYS+CG +++A+ VF +
Sbjct: 263 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 322
Query: 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMIN-QGIRPTKVTFVGVLNACSHGGLVDLGFE 238
+D+ +N++IAG AMHG S +A+ +F EM G++PT +TF+G L AC+H GLV+ G
Sbjct: 323 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 382
Query: 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIH 298
IF+SM ++YGI+P+IEHYGC+V LL R G+ + AY+ I NM + D ++ S+L +CK+H
Sbjct: 383 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 442
Query: 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSS 358
G LG++IA+ L+ +SG YVLLSN YAS G ++ ++R MKE G+ KEPG S+
Sbjct: 443 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 502
Query: 359 IEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALA 418
IE+ N++HEF GD H + ++IY ++++ + +K GY P+T VL D+E+ EKE +L
Sbjct: 503 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQ 562
Query: 419 IHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFE 478
+HSERLAI YGLISTKP + +++ KNLRVC+DCH++ KLI+ IT RKI++RDRNRFHHF
Sbjct: 563 VHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFT 622
Query: 479 NGTCSCGDYW 488
+G+CSCGD+W
Sbjct: 623 DGSCSCGDFW 632
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 154/336 (45%), Gaps = 53/336 (15%)
Query: 59 CYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVT 118
Y HG + ++ +F + D +TA I+ NG +A L+ ++ + PNE T
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 119 IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178
+L +CS + G+ IH+++ K + ++ V L+++Y++ GD+ A +VF+ M
Sbjct: 133 FSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 179 -------------------------------ERDVTTYNSLIAGLAMHGRSIEAVEMFRE 207
ERD+ ++N +I G A HG +A+ +F++
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 208 MINQG-IRPTKVTFVGVLNACSHGGLVDLG--FEIFQSMTRDYGIEPQIEHYGCIVDLLS 264
++ +G +P ++T V L+ACS G ++ G +F +R I ++ ++D+ S
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSR---IRLNVKVCTGLIDMYS 305
Query: 265 RVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG---- 320
+ G EEA + N D + ++++ +HG Q A RL + +G
Sbjct: 306 KCGSLEEAV-LVFNDTPRKDIVAWNAMIAGYAMHGY----SQDALRLFNEMQGITGLQPT 360
Query: 321 --TYVLLSNAYASSGKWKEAVQIRAKM-KEAGVQKE 353
T++ A A +G E ++I M +E G++ +
Sbjct: 361 DITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPK 396
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/489 (47%), Positives = 319/489 (65%), Gaps = 3/489 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR++ + + + N + ++++Y KCG +DA +LFD M E D V T M++ Y
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEE-KDNVTWTTMLDGYA 309
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ-RDNVRPNEVTIV 120
E A EV + + KD V W A+I +NG+ AL +F E+Q + N++ N++T+V
Sbjct: 310 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
LSAC+Q+GALELGRWIHSY+ KH I +N V ALI+MYS+CGD++K+ +VF +++R
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKR 429
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
DV ++++I GLAMHG EAV+MF +M ++P VTF V ACSH GLVD +F
Sbjct: 430 DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF 489
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
M +YGI P+ +HY CIVD+L R G E+A FI M I P + G+LL ACKIH
Sbjct: 490 HQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHAN 549
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L L E RLL+ + G +VLLSN YA GKW+ ++R M+ G++KEPGCSSIE
Sbjct: 550 LNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIE 609
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWE-KEWALAI 419
++ IHEF+ GD HP E++Y K+ E+ + +K GY P VL IE+ E KE +L +
Sbjct: 610 IDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNL 669
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSE+LAICYGLIST+ IRV+KNLRVC DCHS+ KLI+ + R+IIVRDR RFHHF N
Sbjct: 670 HSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRN 729
Query: 480 GTCSCGDYW 488
G CSC D+W
Sbjct: 730 GQCSCNDFW 738
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 159/284 (55%), Gaps = 34/284 (11%)
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
+DV + +I+CY G +++A +VF+ +K KD V W +MI+G V+ G +AL+LF++M
Sbjct: 164 SDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM 223
Query: 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
+ ++V+ + VT+V VLSAC+++ LE GR + SY+ ++R+++N + A+++MY++CG I
Sbjct: 224 ESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSI 283
Query: 168 DKALQVFEEMKE-------------------------------RDVTTYNSLIAGLAMHG 196
+ A ++F+ M+E +D+ +N+LI+ +G
Sbjct: 284 EDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNG 343
Query: 197 RSIEAVEMFREM-INQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEH 255
+ EA+ +F E+ + + ++ ++T V L+AC+ G ++LG I S + +GI
Sbjct: 344 KPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWI-HSYIKKHGIRMNFHV 402
Query: 256 YGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG 299
++ + S+ G E++ + +++ D + +++ +HG
Sbjct: 403 TSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG 445
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 140/288 (48%), Gaps = 12/288 (4%)
Query: 66 VENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM-QRDNVRPNEVTIVCVLS 124
+E A +VF + ++ W +I + ++ F +M PN+ T ++
Sbjct: 80 LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIK 139
Query: 125 ACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTT 184
A +++ +L LG+ +H K + + V +LI+ Y CGD+D A +VF +KE+DV +
Sbjct: 140 AAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVS 199
Query: 185 YNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244
+NS+I G G +A+E+F++M ++ ++ + VT VGVL+AC+ ++ G ++ S
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC-SYI 258
Query: 245 RDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLG 304
+ + + ++D+ ++ G E+A M+ D++ ++L I +
Sbjct: 259 EENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYEAA 317
Query: 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEA------VQIRAKMK 346
++ + D + L +AY +GK EA +Q++ MK
Sbjct: 318 REVLNSM---PQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMK 362
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 459 bits (1182), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/489 (46%), Positives = 318/489 (65%), Gaps = 2/489 (0%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
E +IH Q+ KLG ++ L+ Y G FK A LFD +PE +DV ++V I Y
Sbjct: 133 ETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV-IKGY 191
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
V+ G ++ A +F ++ K+ + WT MI G V+ AL LF EMQ +V P+ V++
Sbjct: 192 VKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLA 251
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
LSAC+QLGALE G+WIHSY+ K RI ++ ++G LI+MY++CG++++AL+VF+ +K++
Sbjct: 252 NALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKK 311
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
V + +LI+G A HG EA+ F EM GI+P +TF VL ACS+ GLV+ G IF
Sbjct: 312 SVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIF 371
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
SM RDY ++P IEHYGCIVDLL R G +EA FI M + P+ ++ G+LL AC+IH
Sbjct: 372 YSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKN 431
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
++LGE+I + L+ G YV +N +A KW +A + R MKE GV K PGCS+I
Sbjct: 432 IELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHD-IEDWEKEWALAI 419
+ HEF+ GD HP+ E+I K + +++ ++ GY P E +L D ++D E+E +
Sbjct: 492 LEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQ 551
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSE+LAI YGLI TKP T IR++KNLRVC DCH + KLI+ I KR I++RDR RFHHF +
Sbjct: 552 HSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRD 611
Query: 480 GTCSCGDYW 488
G CSCGDYW
Sbjct: 612 GKCSCGDYW 620
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 34/241 (14%)
Query: 72 VFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA 131
VF DT W MI G + E R+L L++ M + N T +L ACS L A
Sbjct: 71 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA 130
Query: 132 LELGRWIH--------------------SYMGKHRIDLNHIV-----------GGALINM 160
E IH SY L H++ ++I
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190
Query: 161 YSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF 220
Y + G +D AL +F +M E++ ++ ++I+G + EA+++F EM N + P V+
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250
Query: 221 VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCI-VDLLSRVGRPEEAYDFITNM 279
L+AC+ G ++ G I + + + GC+ +D+ ++ G EEA + N+
Sbjct: 251 ANALSACAQLGALEQGKWIHSYLNKTRIRMDSV--LGCVLIDMYAKCGEMEEALEVFKNI 308
Query: 280 K 280
K
Sbjct: 309 K 309
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/501 (44%), Positives = 324/501 (64%), Gaps = 13/501 (2%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLF-------------DEMPEC 47
EG++IHG LK G + LV +Y CG KDA LF D
Sbjct: 146 EGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRD 205
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
++V VMI+ Y+ G + A +F +++ + V W MI G NG A+++FREM
Sbjct: 206 GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM 265
Query: 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
++ ++RPN VT+V VL A S+LG+LELG W+H Y I ++ ++G ALI+MYS+CG I
Sbjct: 266 KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 325
Query: 168 DKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227
+KA+ VFE + +V T++++I G A+HG++ +A++ F +M G+RP+ V ++ +L AC
Sbjct: 326 EKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTAC 385
Query: 228 SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIM 287
SHGGLV+ G F M G+EP+IEHYGC+VDLL R G +EA +FI NM I PD ++
Sbjct: 386 SHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVI 445
Query: 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
+LL AC++ G +++G+++A L+D DSG YV LSN YAS G W E ++R +MKE
Sbjct: 446 WKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKE 505
Query: 348 AGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHD 407
++K+PGCS I+++ +HEF++ D HP+ ++I + E+ ++L GY P T VL +
Sbjct: 506 KDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLN 565
Query: 408 IEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKII 467
+E+ +KE L HSE++A +GLIST P IR+VKNLR+C DCHS IKLI+ + KRKI
Sbjct: 566 LEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKIT 625
Query: 468 VRDRNRFHHFENGTCSCGDYW 488
VRDR RFHHF++G+CSC DYW
Sbjct: 626 VRDRKRFHHFQDGSCSCMDYW 646
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 128/295 (43%), Gaps = 52/295 (17%)
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMAR--ALDLFREMQRDN-VRPNEV 117
+ H ++ A ++F+++ ++ W +I G + E A+ LF EM D V PN
Sbjct: 70 LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRF 129
Query: 118 TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC------------- 164
T VL AC++ G ++ G+ IH K+ + V L+ MY C
Sbjct: 130 TFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKN 189
Query: 165 --------------------------------GDIDKALQVFEEMKERDVTTYNSLIAGL 192
GD A +F++M++R V ++N++I+G
Sbjct: 190 IIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 249
Query: 193 AMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ 252
+++G +AVE+FREM IRP VT V VL A S G ++LG E D GI
Sbjct: 250 SLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRID 308
Query: 253 IEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQI 307
++D+ S+ G E+A + + I ++++ IHG Q G+ I
Sbjct: 309 DVLGSALIDMYSKCGIIEKAIHVFERLP-RENVITWSAMINGFAIHG--QAGDAI 360
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 457 bits (1175), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/488 (44%), Positives = 329/488 (67%), Gaps = 2/488 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G + H Q+++ G +++ LV +Y CG A ++F +M DVV+ T M+ Y
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMG-FRDVVSWTSMVAGYC 194
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+ G+VENA E+F + ++ W+ MI+G +N +A+DLF M+R+ V NE +V
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
V+S+C+ LGALE G + Y+ K + +N I+G AL++M+ RCGDI+KA+ VFE + E D
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
+++S+I GLA+HG + +A+ F +MI+ G P VTF VL+ACSHGGLV+ G EI++
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
+M +D+GIEP++EHYGCIVD+L R G+ EA +FI M + P+ +LG+LL ACKI+
Sbjct: 375 NMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT 434
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
++ E++ L+ + SG YVLLSN YA +G+W + +R MKE V+K PG S IE+
Sbjct: 435 EVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494
Query: 362 NNEIHEFILG-DIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
+ +I++F +G D +HP+ +I +K +E+ ++L GY +T D+++ EKE ++ +H
Sbjct: 495 DGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMH 554
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SE+LAI YG++ TKP TTIR+VKNLRVC DCH++ KLI+ + R++IVRDRNRFHHF NG
Sbjct: 555 SEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNG 614
Query: 481 TCSCGDYW 488
CSC DYW
Sbjct: 615 VCSCRDYW 622
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 118/266 (44%), Gaps = 33/266 (12%)
Query: 65 LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLS 124
L+ A+ +FS+++ + + +I E ++A + +M + + P+ +T ++
Sbjct: 66 LLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIK 125
Query: 125 ACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTT 184
A S++ + +G HS + + + V +L++MY+ CG I A ++F +M RDV +
Sbjct: 126 ASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVS 185
Query: 185 YNSLIAGLAMHGRSIEAVEMFRE-----------MIN--------------------QGI 213
+ S++AG G A EMF E MIN +G+
Sbjct: 186 WTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245
Query: 214 RPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAY 273
+ V V+++C+H G ++ G ++ + + + + + +VD+ R G E+A
Sbjct: 246 VANETVMVSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDIEKAI 304
Query: 274 DFITNMKIAPDHIMLGSLLSACKIHG 299
+ D + S++ +HG
Sbjct: 305 HVFEGLP-ETDSLSWSSIIKGLAVHG 329
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/494 (42%), Positives = 324/494 (65%), Gaps = 8/494 (1%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ H Q+L GL + R L+ +Y CG+ + A ++FD+ D+ A ++N Y
Sbjct: 81 GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDD-SGSKDLPAWNSVVNAYA 139
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDN-----VRPNE 116
+ GL+++A ++F + ++ + W+ +I+G V G+ ALDLFREMQ VRPNE
Sbjct: 140 KAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNE 199
Query: 117 VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176
T+ VLSAC +LGALE G+W+H+Y+ K+ ++++ ++G ALI+MY++CG +++A +VF
Sbjct: 200 FTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNA 259
Query: 177 M-KERDVTTYNSLIAGLAMHGRSIEAVEMFREMI-NQGIRPTKVTFVGVLNACSHGGLVD 234
+ ++DV Y+++I LAM+G + E ++F EM + I P VTFVG+L AC H GL++
Sbjct: 260 LGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLIN 319
Query: 235 LGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSA 294
G F+ M ++GI P I+HYGC+VDL R G +EA FI +M + PD ++ GSLLS
Sbjct: 320 EGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSG 379
Query: 295 CKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354
++ G ++ E KRL++ +SG YVLLSN YA +G+W E IR +M+ G+ K P
Sbjct: 380 SRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVP 439
Query: 355 GCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKE 414
GCS +EV +HEF++GD + E+IY + E+ Q ++ GY T+ VL D+ + +KE
Sbjct: 440 GCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKE 499
Query: 415 WALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRF 474
AL+ HSE+LAI + L+ T+P T +R++KNLR+C DCH ++K+I+ + R+I+VRD NRF
Sbjct: 500 IALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRF 559
Query: 475 HHFENGTCSCGDYW 488
HHF +G+CSC D+W
Sbjct: 560 HHFRDGSCSCRDFW 573
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 134/342 (39%), Gaps = 76/342 (22%)
Query: 80 DTVCWTAMIDGLVRN---GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGR 136
++ W +I +V N + + ++ M+ V P+ T +L + L LG+
Sbjct: 23 ESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQ 82
Query: 137 WIHSYMGKHRIDLNHIVGGALINMYSRCGD------------------------------ 166
H+ + +D + V +L+NMYS CGD
Sbjct: 83 RTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAG 142
Query: 167 -IDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREM----INQG-IRPTKVTF 220
ID A ++F+EM ER+V +++ LI G M G+ EA+++FREM N+ +RP + T
Sbjct: 143 LIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTM 202
Query: 221 VGVLNACSHGGLVDLG-------------------------------FEIFQSMTRDYGI 249
VL+AC G ++ G E + + G
Sbjct: 203 STVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGS 262
Query: 250 EPQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPDHIMLGSLLSACKIHGKLQLGE 305
+ ++ Y ++ L+ G +E + + M I P+ + +L AC G + G+
Sbjct: 263 KKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGK 322
Query: 306 QIAKRLLDCRSADSGT--YVLLSNAYASSGKWKEAVQIRAKM 345
K +++ Y + + Y SG KEA A M
Sbjct: 323 SYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASM 364
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 36/200 (18%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+G+ +H + K + + L+++Y KCG + A ++F+ + DV A + MI C
Sbjct: 217 QGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCL 276
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
+GL + F++FS + DN+ PN VT V
Sbjct: 277 AMYGLTDECFQLFSEMTTS------------------------------DNINPNSVTFV 306
Query: 121 CVLSACSQLGALELGRWIHSYMGKH---RIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177
+L AC G + G+ M + + H G ++++Y R G I +A M
Sbjct: 307 GILGACVHRGLINEGKSYFKMMIEEFGITPSIQHY--GCMVDLYGRSGLIKEAESFIASM 364
Query: 178 K-ERDVTTYNSLIAGLAMHG 196
E DV + SL++G M G
Sbjct: 365 PMEPDVLIWGSLLSGSRMLG 384
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/493 (42%), Positives = 322/493 (65%), Gaps = 5/493 (1%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQL---FDEMPECNDVVASTVMI 57
E E+ ++K +R + ST + +V + G + Q+ D+ +++ +I
Sbjct: 249 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308
Query: 58 NCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV 117
+ Y + G +E A +F R+ KD + W +I G AL LF+EM R PN+V
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368
Query: 118 TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI--VGGALINMYSRCGDIDKALQVFE 175
T++ +L AC+ LGA+++GRWIH Y+ K + + + +LI+MY++CGDI+ A QVF
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 428
Query: 176 EMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235
+ + ++++N++I G AMHGR+ + ++F M GI+P +TFVG+L+ACSH G++DL
Sbjct: 429 SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 488
Query: 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSAC 295
G IF++MT+DY + P++EHYGC++DLL G +EA + I M++ PD ++ SLL AC
Sbjct: 489 GRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC 548
Query: 296 KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPG 355
K+HG ++LGE A+ L+ + G+YVLLSN YAS+G+W E + RA + + G++K PG
Sbjct: 549 KMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPG 608
Query: 356 CSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEW 415
CSSIE+++ +HEFI+GD HP+ +IY ++E++ +++ G+ P T VL ++E+ KE
Sbjct: 609 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEG 668
Query: 416 ALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFH 475
AL HSE+LAI +GLISTKP T + +VKNLRVC +CH KLI+ I KR+II RDR RFH
Sbjct: 669 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 728
Query: 476 HFENGTCSCGDYW 488
HF +G CSC DYW
Sbjct: 729 HFRDGVCSCNDYW 741
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/351 (33%), Positives = 183/351 (52%), Gaps = 46/351 (13%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EG++IHG VLKLG + L+ +Y + G +DA ++FD+ P DVV+ T +I Y
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPH-RDVVSYTALIKGY 210
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
G +ENA ++F + VKD V W AMI G G AL+LF++M + NVRP+E T+V
Sbjct: 211 ASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 270
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
V+SAC+Q G++ELGR +H ++ H N + ALI++YS+CG+++ A +FE + +
Sbjct: 271 TVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK 330
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLG---- 236
DV ++N+LI G EA+ +F+EM+ G P VT + +L AC+H G +D+G
Sbjct: 331 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIH 390
Query: 237 ---------------------------------FEIFQSMTRDYGIEPQIEHYGCIVDLL 263
++F S+ + + + ++
Sbjct: 391 VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-----LHKSLSSWNAMIFGF 445
Query: 264 SRVGRPEEAYDFITNMK---IAPDHIMLGSLLSACKIHGKLQLGEQIAKRL 311
+ GR + ++D + M+ I PD I LLSAC G L LG I + +
Sbjct: 446 AMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTM 496
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/408 (24%), Positives = 166/408 (40%), Gaps = 100/408 (24%)
Query: 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVE 62
R IH Q++K+GL + KL+E F F+ +P
Sbjct: 50 RIIHAQMIKIGLHNTNYALSKLIE-------FCILSPHFEGLPY---------------- 86
Query: 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122
A VF ++ + + W M G + + AL L+ M + PN T V
Sbjct: 87 ------AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFV 140
Query: 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV 182
L +C++ A + G+ IH ++ K DL+ V +LI+MY + G ++ A +VF++ RDV
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200
Query: 183 TTY-------------------------------NSLIAGLAMHGRSIEAVEMFREMINQ 211
+Y N++I+G A G EA+E+F++M+
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260
Query: 212 GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE 271
+RP + T V V++AC+ G ++LG ++ D+G ++ ++DL S+ G E
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQV-HLWIDDHGFGSNLKIVNALIDLYSKCGELET 319
Query: 272 AYDFI------------------TNMKI----------------APDHIMLGSLLSACKI 297
A T+M + P+ + + S+L AC
Sbjct: 320 ACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 379
Query: 298 HGKLQLGE----QIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQI 341
G + +G I KRL +A S L+ + YA G + A Q+
Sbjct: 380 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLI-DMYAKCGDIEAAHQV 426
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/487 (42%), Positives = 309/487 (63%), Gaps = 1/487 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G ++HG ++ G ++ + L+ LY + G ++F+ +P C D V T M+
Sbjct: 127 GLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIP-CPDFVCRTAMVTACA 185
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
G V A ++F + +D + W AMI G + GE AL++F MQ + V+ N V ++
Sbjct: 186 RCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMIS 245
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VLSAC+QLGAL+ GRW HSY+ +++I + + L+++Y++CGD++KA++VF M+E++
Sbjct: 246 VLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKN 305
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V T++S + GLAM+G + +E+F M G+ P VTFV VL CS G VD G F
Sbjct: 306 VYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFD 365
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
SM ++GIEPQ+EHYGC+VDL +R GR E+A I M + P + SLL A +++ L
Sbjct: 366 SMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNL 425
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
+LG +K++L+ +A+ G YVLLSN YA S W +R MK GV+K+PGCS +EV
Sbjct: 426 ELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEV 485
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
N E+HEF +GD HP+ QI +++ + ++L GY T V+ DI++ EKE AL +HS
Sbjct: 486 NGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHS 545
Query: 422 ERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGT 481
E+ AI +G++S K IR+VKNLRVC DCH + +I+ I R+IIVRDRNRFHHF++G
Sbjct: 546 EKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGH 605
Query: 482 CSCGDYW 488
CSC +W
Sbjct: 606 CSCNGFW 612
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/431 (20%), Positives = 172/431 (39%), Gaps = 100/431 (23%)
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM--QRDNVRPNEVTI 119
+H ++ A ++ R + +MI ++ ++ D +R + ++++P+ T+
Sbjct: 52 DHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTV 111
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR---------------- 163
++ AC+ L E G +H + D + V LI++Y+
Sbjct: 112 NFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPC 171
Query: 164 ---------------CGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREM 208
CGD+ A ++FE M ERD +N++I+G A G S EA+ +F M
Sbjct: 172 PDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLM 231
Query: 209 INQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268
+G++ V + VL+AC+ G +D G + R+ I+ + +VDL ++ G
Sbjct: 232 QLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERN-KIKITVRLATTLVDLYAKCGD 290
Query: 269 PEEAYDFITNMK----------------------------------IAPDHIMLGSLLSA 294
E+A + M+ + P+ + S+L
Sbjct: 291 MEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRG 350
Query: 295 CKIHGKLQLGEQIAKRLLDCRSADSGT------YVLLSNAYASSGKWKEAVQIRAKMKEA 348
C + G + G+ R D + G Y L + YA +G+ ++AV I
Sbjct: 351 CSVVGFVDEGQ----RHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSI------- 399
Query: 349 GVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQ----ELKQIVKLEGYSPSTEVV 404
+Q+ P + H + + H R +YK ++ K++++LE + V+
Sbjct: 400 -IQQMP--------MKPHAAVWSSLLHASR--MYKNLELGVLASKKMLELETANHGAYVL 448
Query: 405 LHDIEDWEKEW 415
L +I +W
Sbjct: 449 LSNIYADSNDW 459
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 34/197 (17%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+GR H + + ++ LV+LY KCG+ + AM++F M E
Sbjct: 258 QGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEE-------------- 303
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
K+ W++ ++GL NG + L+LF M++D V PN VT V
Sbjct: 304 ------------------KNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFV 345
Query: 121 CVLSACSQLGALELG-RWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179
VL CS +G ++ G R S + I+ G L+++Y+R G ++ A+ + ++M
Sbjct: 346 SVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPM 405
Query: 180 RD-VTTYNSLIAGLAMH 195
+ ++SL+ M+
Sbjct: 406 KPHAAVWSSLLHASRMY 422
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/484 (42%), Positives = 293/484 (60%), Gaps = 32/484 (6%)
Query: 5 IHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHG 64
IHG LK S+ S L +Y K E + A +LFDE PE
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPE------------------ 382
Query: 65 LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLS 124
K W AMI G +NG A+ LFREMQ+ PN VTI C+LS
Sbjct: 383 --------------KSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILS 428
Query: 125 ACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTT 184
AC+QLGAL LG+W+H + + + V ALI MY++CG I +A ++F+ M +++ T
Sbjct: 429 ACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVT 488
Query: 185 YNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244
+N++I+G +HG+ EA+ +F EM+N GI PT VTF+ VL ACSH GLV G EIF SM
Sbjct: 489 WNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMI 548
Query: 245 RDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLG 304
YG EP ++HY C+VD+L R G + A FI M I P + +LL AC+IH L
Sbjct: 549 HRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLA 608
Query: 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNE 364
++++L + + G +VLLSN +++ + +A +R K+ + K PG + IE+
Sbjct: 609 RTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGET 668
Query: 365 IHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERL 424
H F GD HPQ ++IY+K+++L+ ++ GY P TE+ LHD+E+ E+E + +HSERL
Sbjct: 669 PHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERL 728
Query: 425 AICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSC 484
AI +GLI+T+P T IR++KNLRVC DCH++ KLI+ IT+R I+VRD NRFHHF++G CSC
Sbjct: 729 AIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSC 788
Query: 485 GDYW 488
GDYW
Sbjct: 789 GDYW 792
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/372 (23%), Positives = 154/372 (41%), Gaps = 70/372 (18%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR IHGQ + G S +V++Y K +DA ++FD MPE
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPE--------------- 182
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDN-VRPNEVTIV 120
KDT+ W MI G +N ++ +FR++ ++ R + T++
Sbjct: 183 -----------------KDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
+L A ++L L LG IHS K + V I++YS+CG I +F E ++
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKP 285
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVL---------------- 224
D+ YN++I G +G + ++ +F+E++ G R T V ++
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYC 345
Query: 225 ---NACSHGGLVDLGFEIFQSMTR--------DYGIEPQIEHYGCIVDLLSRVGRPEEAY 273
N SH + ++ + D E + + ++ ++ G E+A
Sbjct: 346 LKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405
Query: 274 DFITNMK---IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNA-- 328
M+ +P+ + + +LSAC G L LG+ + + RS D + + +S A
Sbjct: 406 SLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLV---RSTDFESSIYVSTALI 462
Query: 329 --YASSGKWKEA 338
YA G EA
Sbjct: 463 GMYAKCGSIAEA 474
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/370 (21%), Positives = 156/370 (42%), Gaps = 56/370 (15%)
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
ND+ T + + G + A ++F V+ D + ++ G N +L +F +
Sbjct: 50 NDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHL 109
Query: 108 QRD-NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166
++ +++PN T +SA S GR IH D ++G ++ MY +
Sbjct: 110 RKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWR 169
Query: 167 IDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLN 225
++ A +VF+ M E+D +N++I+G + +E++++FR++IN+ R T + +L
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229
Query: 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDH 285
A + + LG +I T+ GC + D+
Sbjct: 230 AVAELQELRLGMQIHSLATKT----------GC----------------------YSHDY 257
Query: 286 IMLG--SLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK-------WK 336
++ G SL S C GK+++G + + R D Y + + Y S+G+ +K
Sbjct: 258 VLTGFISLYSKC---GKIKMGSALFREF---RKPDIVAYNAMIHGYTSNGETELSLSLFK 311
Query: 337 EAVQIRAKMKEAG-VQKEPGCSSIEVNNEIHEFILGD--IRHPQRE----QIYKKMQELK 389
E + A+++ + V P + + IH + L + H +Y K+ E++
Sbjct: 312 ELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIE 371
Query: 390 QIVKLEGYSP 399
KL SP
Sbjct: 372 SARKLFDESP 381
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 36/197 (18%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ +H V S+ L+ +Y KCG +A +LFD M + N+V +T
Sbjct: 439 GKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT------- 491
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
MI G +G+ AL++F EM + P VT +C
Sbjct: 492 -------------------------MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLC 526
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVG--GALINMYSRCGDIDKALQVFEEMK- 178
VL ACS G ++ G I + M HR V ++++ R G + +ALQ E M
Sbjct: 527 VLYACSHAGLVKEGDEIFNSM-IHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSI 585
Query: 179 ERDVTTYNSLIAGLAMH 195
E + + +L+ +H
Sbjct: 586 EPGSSVWETLLGACRIH 602
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/488 (40%), Positives = 300/488 (61%), Gaps = 32/488 (6%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+G+EIHG V++ G+ S DV + +++ Y
Sbjct: 260 KGKEIHGYVIRKGIDS--------------------------------DVYIGSSLVDMY 287
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
+ +E++ VFSR+ +D + W +++ G V+NG AL LFR+M V+P V
Sbjct: 288 AKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFS 347
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
V+ AC+ L L LG+ +H Y+ + N + AL++MYS+CG+I A ++F+ M
Sbjct: 348 SVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVL 407
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
D ++ ++I G A+HG EAV +F EM QG++P +V FV VL ACSH GLVD + F
Sbjct: 408 DEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYF 467
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
SMT+ YG+ ++EHY + DLL R G+ EEAY+FI+ M + P + +LLS+C +H
Sbjct: 468 NSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKN 527
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L+L E++A+++ S + G YVL+ N YAS+G+WKE ++R +M++ G++K+P CS IE
Sbjct: 528 LELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIE 587
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
+ N+ H F+ GD HP ++I + ++ + + ++ EGY T VLHD+++ K L H
Sbjct: 588 MKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGH 647
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SERLA+ +G+I+T+P TTIRV KN+R+C DCH IK I+ IT+R+IIVRD +RFHHF G
Sbjct: 648 SERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRG 707
Query: 481 TCSCGDYW 488
CSCGDYW
Sbjct: 708 NCSCGDYW 715
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 20/309 (6%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKC---GEFKDAMQLFDEMPECN------DVVA 52
G +HG +++LG+ + T L+ +Y K G +FDEMP+ DV A
Sbjct: 124 GESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKA 183
Query: 53 STVMINCYVEHGL--VENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD 110
T C + G+ V FEV R KD V + +I G ++G AL + REM
Sbjct: 184 ET----CIMPFGIDSVRRVFEVMPR---KDVVSYNTIIAGYAQSGMYEDALRMVREMGTT 236
Query: 111 NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA 170
+++P+ T+ VL S+ + G+ IH Y+ + ID + +G +L++MY++ I+ +
Sbjct: 237 DLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDS 296
Query: 171 LQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230
+VF + RD ++NSL+AG +GR EA+ +FR+M+ ++P V F V+ AC+H
Sbjct: 297 ERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHL 356
Query: 231 GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGS 290
+ LG ++ + R G I +VD+ S+ G + A M + D + +
Sbjct: 357 ATLHLGKQLHGYVLRG-GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVL-DEVSWTA 414
Query: 291 LLSACKIHG 299
++ +HG
Sbjct: 415 IIMGHALHG 423
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 145/368 (39%), Gaps = 76/368 (20%)
Query: 51 VASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD 110
+++++I+ Y L+ A +F +K + W ++I ++AL F EM+
Sbjct: 40 TSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRAS 99
Query: 111 NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY--------- 161
P+ VL +C+ + L G +H ++ + +D + G AL+NMY
Sbjct: 100 GRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSK 159
Query: 162 --------------SRCGD-------------IDKALQVFEEMKERDVTTYNSLIAGLAM 194
S GD ID +VFE M +DV +YN++IAG A
Sbjct: 160 ISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQ 219
Query: 195 HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS-----------HGGLVDLGFE----I 239
G +A+ M REM ++P T VL S HG ++ G + I
Sbjct: 220 SGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYI 279
Query: 240 FQSMTRDYGIEPQIE---------------HYGCIVDLLSRVGRPEEAYDFITNM---KI 281
S+ Y +IE + +V + GR EA M K+
Sbjct: 280 GSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV 339
Query: 282 APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNA----YASSGKWKE 337
P + S++ AC L LG+Q+ +L G+ + +++A Y+ G K
Sbjct: 340 KPGAVAFSSVIPACAHLATLHLGKQLHGYVL---RGGFGSNIFIASALVDMYSKCGNIKA 396
Query: 338 AVQIRAKM 345
A +I +M
Sbjct: 397 ARKIFDRM 404
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/492 (40%), Positives = 311/492 (63%), Gaps = 7/492 (1%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR IHG V+K GL ++ ++++YGK G + LF++ E + I
Sbjct: 271 GRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQF-EMMEAGVCNAYITGLS 329
Query: 62 EHGLVENAFEVFSRVKVK----DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV 117
+GLV+ A E+F K + + V WT++I G +NG+ AL+LFREMQ V+PN V
Sbjct: 330 RNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHV 389
Query: 118 TIVCVLSACSQLGALELGRWIHSYMGK-HRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176
TI +L AC + AL GR H + + H +D H VG ALI+MY++CG I+ + VF
Sbjct: 390 TIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVH-VGSALIDMYAKCGRINLSQIVFNM 448
Query: 177 MKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLG 236
M +++ +NSL+ G +MHG++ E + +F ++ ++P ++F +L+AC GL D G
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 237 FEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACK 296
++ F+ M+ +YGI+P++EHY C+V+LL R G+ +EAYD I M PD + G+LL++C+
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCR 568
Query: 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGC 356
+ + L E A++L + GTYVLLSN YA+ G W E IR KM+ G++K PGC
Sbjct: 569 LQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGC 628
Query: 357 SSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWA 416
S I+V N ++ + GD HPQ +QI +KM E+ + ++ G+ P+ + LHD+E+ E+E
Sbjct: 629 SWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQM 688
Query: 417 LAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHH 476
L HSE+LA+ +GL++T T ++V+KNLR+C DCH++IK I++ R+I +RD NRFHH
Sbjct: 689 LWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHH 748
Query: 477 FENGTCSCGDYW 488
F++G CSCGD+W
Sbjct: 749 FKDGICSCGDFW 760
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 177/390 (45%), Gaps = 51/390 (13%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G++IH GL + + + +Y +CG DA ++FD M + DVV + ++ Y
Sbjct: 135 GKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSD-KDVVTCSALLCAYA 193
Query: 62 EHGLVENAFEVFSRVKVK----DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV 117
G +E + S ++ + V W ++ G R+G A+ +F+++ P++V
Sbjct: 194 RKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQV 253
Query: 118 TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY---------------- 161
T+ VL + L +GR IH Y+ K + + V A+I+MY
Sbjct: 254 TVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQF 313
Query: 162 ---------------SRCGDIDKALQVFEEMKER----DVTTYNSLIAGLAMHGRSIEAV 202
SR G +DKAL++FE KE+ +V ++ S+IAG A +G+ IEA+
Sbjct: 314 EMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEAL 373
Query: 203 EMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQI---EHYG-C 258
E+FREM G++P VT +L AC G + LG T + + + H G
Sbjct: 374 ELFREMQVAGVKPNHVTIPSMLPAC--GNIAALG---HGRSTHGFAVRVHLLDNVHVGSA 428
Query: 259 IVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR-SA 317
++D+ ++ GR + + NM + + SL++ +HGK + I + L+ R
Sbjct: 429 LIDMYAKCGRINLS-QIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKP 487
Query: 318 DSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
D ++ L +A G E + M E
Sbjct: 488 DFISFTSLLSACGQVGLTDEGWKYFKMMSE 517
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 93/196 (47%)
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
ND S +I Y + +A V + ++++I L + +++ +F M
Sbjct: 48 NDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRM 107
Query: 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
+ P+ + + C++L A ++G+ IH +D++ V G++ +MY RCG +
Sbjct: 108 FSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRM 167
Query: 168 DKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227
A +VF+ M ++DV T ++L+ A G E V + EM + GI V++ G+L+
Sbjct: 168 GDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGF 227
Query: 228 SHGGLVDLGFEIFQSM 243
+ G +FQ +
Sbjct: 228 NRSGYHKEAVVMFQKI 243
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/452 (44%), Positives = 288/452 (63%), Gaps = 1/452 (0%)
Query: 37 AMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGE 96
A +LFD MP C +V MI Y + G + A +F ++ +D V W AMI G ++G
Sbjct: 331 AKELFDVMP-CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGH 389
Query: 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156
AL LF +M+R+ R N + LS C+ + ALELG+ +H + K + VG A
Sbjct: 390 SFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNA 449
Query: 157 LINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT 216
L+ MY +CG I++A +F+EM +D+ ++N++IAG + HG A+ F M +G++P
Sbjct: 450 LLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPD 509
Query: 217 KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFI 276
T V VL+ACSH GLVD G + F +MT+DYG+ P +HY C+VDLL R G E+A++ +
Sbjct: 510 DATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLM 569
Query: 277 TNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWK 336
NM PD + G+LL A ++HG +L E A ++ +SG YVLLSN YASSG+W
Sbjct: 570 KNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWG 629
Query: 337 EAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEG 396
+ ++R +M++ GV+K PG S IE+ N+ H F +GD HP++++I+ ++EL +K G
Sbjct: 630 DVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAG 689
Query: 397 YSPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIK 456
Y T VVLHD+E+ EKE + HSERLA+ YG++ IRV+KNLRVC DCH+ IK
Sbjct: 690 YVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIK 749
Query: 457 LIANITKRKIIVRDRNRFHHFENGTCSCGDYW 488
+A IT R II+RD NRFHHF++G+CSCGDYW
Sbjct: 750 YMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 138/309 (44%), Gaps = 52/309 (16%)
Query: 36 DAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNG 95
+A Q FD M DVV+ +I Y + G ++ A ++F V+D WTAM+ G ++N
Sbjct: 237 EARQFFDSM-NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNR 295
Query: 96 EMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGG 155
+ A +LF +M NEV+ +L+ Q +E+ + + M +
Sbjct: 296 MVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS----TWN 347
Query: 156 ALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP 215
+I Y++CG I +A +F++M +RD ++ ++IAG + G S EA+ +F +M +G R
Sbjct: 348 TMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRL 407
Query: 216 TKVTFVGVLNACS-----------HGGLVDLGFE------------------------IF 240
+ +F L+ C+ HG LV G+E +F
Sbjct: 408 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLF 467
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMK---IAPDHIMLGSLLSACKI 297
+ M I + ++ SR G E A F +MK + PD + ++LSAC
Sbjct: 468 KEMA-----GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSH 522
Query: 298 HGKLQLGEQ 306
G + G Q
Sbjct: 523 TGLVDKGRQ 531
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 147/326 (45%), Gaps = 22/326 (6%)
Query: 24 LVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVC 83
++ Y + GEF+ A +LFDEMPE D+V+ VMI YV + + A E+F + +D
Sbjct: 101 MISGYLRNGEFELARKLFDEMPE-RDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCS 159
Query: 84 WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMG 143
W M+ G +NG + A +F M N+V+ +LSA Q +E +
Sbjct: 160 WNTMLSGYAQNGCVDDARSVFDRMP----EKNDVSWNALLSAYVQNSKMEEA----CMLF 211
Query: 144 KHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVE 203
K R + + L+ + + I +A Q F+ M RDV ++N++I G A G+ EA +
Sbjct: 212 KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQ 271
Query: 204 MFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLL 263
+F E Q + T+ +++ +V+ E+F M + G +
Sbjct: 272 LFDESPVQDV----FTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQG-- 325
Query: 264 SRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323
R+ +E +D + ++ + M+ KI L +++ KR D ++
Sbjct: 326 ERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKR-------DPVSWA 378
Query: 324 LLSNAYASSGKWKEAVQIRAKMKEAG 349
+ Y+ SG EA+++ +M+ G
Sbjct: 379 AMIAGYSQSGHSFEALRLFVQMEREG 404
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 34/199 (17%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+++HG+++K G + L+ +Y KCG ++A LF EM D+V+ MI Y
Sbjct: 428 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYS 486
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
HG GE+ AL F M+R+ ++P++ T+V
Sbjct: 487 RHGF-----------------------------GEV--ALRFFESMKREGLKPDDATMVA 515
Query: 122 VLSACSQLGALELGR-WIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK-E 179
VLSACS G ++ GR + ++ + + N ++++ R G ++ A + + M E
Sbjct: 516 VLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 575
Query: 180 RDVTTYNSLIAGLAMHGRS 198
D + +L+ +HG +
Sbjct: 576 PDAAIWGTLLGASRVHGNT 594
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/489 (42%), Positives = 300/489 (61%), Gaps = 33/489 (6%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EGR++H +KLGL N V +IN Y
Sbjct: 147 EGRQLHCLSMKLGLDDN--------------------------------VYVCPTLINMY 174
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
E V++A VF R+ VC+ AMI G R AL LFREMQ ++PNE+T++
Sbjct: 175 TECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLL 234
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
VLS+C+ LG+L+LG+WIH Y KH V ALI+M+++CG +D A+ +FE+M+ +
Sbjct: 235 SVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK 294
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
D ++++I A HG++ +++ MF M ++ ++P ++TF+G+LNACSH G V+ G + F
Sbjct: 295 DTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYF 354
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
M +GI P I+HYG +VDLLSR G E+AY+FI + I+P ++ LL+AC H
Sbjct: 355 SQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNN 414
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L L E++++R+ + + G YV+LSN YA + KW+ +R MK+ K PGCSSIE
Sbjct: 415 LDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIE 474
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLH-DIEDWEKEWALAI 419
VNN +HEF GD ++++ + E+ + +KL GY P T +V+H ++ D EKE L
Sbjct: 475 VNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRY 534
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSE+LAI +GL++T P TTIRVVKNLRVC DCH+ KLI+ I RK+++RD RFHHFE+
Sbjct: 535 HSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFED 594
Query: 480 GTCSCGDYW 488
G CSCGD+W
Sbjct: 595 GKCSCGDFW 603
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 153/325 (47%), Gaps = 8/325 (2%)
Query: 27 LYGKCGEFKDAMQL--FDEMPECNDVVASTVMINCYVE---HGLVENAFEVFSRVKVKDT 81
L KC ++ MQ+ + DV +IN E + A +F + D
Sbjct: 35 LISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDI 94
Query: 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSY 141
V + +M G R LF E+ D + P+ T +L AC+ ALE GR +H
Sbjct: 95 VIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCL 154
Query: 142 MGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEA 201
K +D N V LINMY+ C D+D A VF+ + E V YN++I G A R EA
Sbjct: 155 SMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEA 214
Query: 202 VEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261
+ +FREM + ++P ++T + VL++C+ G +DLG I + + ++ ++D
Sbjct: 215 LSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWI-HKYAKKHSFCKYVKVNTALID 273
Query: 262 LLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRL-LDCRSADSG 320
+ ++ G ++A M+ D +++ A HGK + + +R+ + D
Sbjct: 274 MFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEI 332
Query: 321 TYVLLSNAYASSGKWKEAVQIRAKM 345
T++ L NA + +G+ +E + ++M
Sbjct: 333 TFLGLLNACSHTGRVEEGRKYFSQM 357
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/529 (39%), Positives = 304/529 (57%), Gaps = 43/529 (8%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR+IHG K+GL S LV +YGKCG +A + DEM DVV+ ++ Y
Sbjct: 159 GRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSR-RDVVSWNSLVVGYA 217
Query: 62 EHGLVENAFEV-------------------------------------FSRVKVKDTVCW 84
++ ++A EV F ++ K V W
Sbjct: 218 QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSW 277
Query: 85 TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGK 144
MI ++N A++L+ M+ D P+ V+I VL AC AL LG+ IH Y+ +
Sbjct: 278 NVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER 337
Query: 145 HRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEM 204
++ N ++ ALI+MY++CG ++KA VFE MK RDV ++ ++I+ GR +AV +
Sbjct: 338 KKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVAL 397
Query: 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLS 264
F ++ + G+ P + FV L ACSH GL++ G F+ MT Y I P++EH C+VDLL
Sbjct: 398 FSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLG 457
Query: 265 RVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVL 324
R G+ +EAY FI +M + P+ + G+LL AC++H +G A +L SG YVL
Sbjct: 458 RAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVL 517
Query: 325 LSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKK 384
LSN YA +G+W+E IR MK G++K PG S++EVN IH F++GD HPQ ++IY++
Sbjct: 518 LSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRE 577
Query: 385 MQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTK-----PYTTI 439
+ L + +K GY P +E LHD+E+ +KE LA+HSE+LAI + L++TK TI
Sbjct: 578 LDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTI 637
Query: 440 RVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGDYW 488
R+ KNLR+C DCH KLI+ IT R+II+RD NRFH F G CSCGDYW
Sbjct: 638 RITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 171/385 (44%), Gaps = 74/385 (19%)
Query: 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVE 62
R +H +++ LR N S +KL+ Y + A ++FDE+PE N ++IN
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERN-----VIIIN---- 109
Query: 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122
MI V NG + +F M NVRP+ T CV
Sbjct: 110 -----------------------VMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCV 146
Query: 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV 182
L ACS G + +GR IH K + VG L++MY +CG + +A V +EM RDV
Sbjct: 147 LKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDV 206
Query: 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF--EIF 240
++NSL+ G A + R +A+E+ REM + I T +L A S+ ++ + ++F
Sbjct: 207 VSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMF 266
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMK---IAPDHIMLGSLLSAC-- 295
M + + + ++ + + P EA + + M+ PD + + S+L AC
Sbjct: 267 FKMGKK-----SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGD 321
Query: 296 --------KIHGKLQLGEQIAKRLL----------------------DCRSADSGTYVLL 325
KIHG ++ + I LL + +S D ++ +
Sbjct: 322 TSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAM 381
Query: 326 SNAYASSGKWKEAVQIRAKMKEAGV 350
+AY SG+ +AV + +K++++G+
Sbjct: 382 ISAYGFSGRGCDAVALFSKLQDSGL 406
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/434 (44%), Positives = 293/434 (67%), Gaps = 1/434 (0%)
Query: 56 MINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN 115
+++ Y G V +A++VF ++ KD V W ++I+G NG+ AL L+ EM ++P+
Sbjct: 162 LLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPD 221
Query: 116 EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFE 175
TIV +LSAC+++GAL LG+ +H YM K + N L+++Y+RCG +++A +F+
Sbjct: 222 GFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFD 281
Query: 176 EMKERDVTTYNSLIAGLAMHGRSIEAVEMFREM-INQGIRPTKVTFVGVLNACSHGGLVD 234
EM +++ ++ SLI GLA++G EA+E+F+ M +G+ P ++TFVG+L ACSH G+V
Sbjct: 282 EMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVK 341
Query: 235 LGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSA 294
GFE F+ M +Y IEP+IEH+GC+VDLL+R G+ ++AY++I +M + P+ ++ +LL A
Sbjct: 342 EGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGA 401
Query: 295 CKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354
C +HG L E ++L SG YVLLSN YAS +W + +IR +M GV+K P
Sbjct: 402 CTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVP 461
Query: 355 GCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKE 414
G S +EV N +HEF++GD HPQ + IY K++E+ ++ EGY P V D+E+ EKE
Sbjct: 462 GHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKE 521
Query: 415 WALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRF 474
A+ HSE++AI + LIST + I VVKNLRVC DCH IKL++ + R+I+VRDR+RF
Sbjct: 522 NAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRF 581
Query: 475 HHFENGTCSCGDYW 488
HHF+NG+CSC DYW
Sbjct: 582 HHFKNGSCSCQDYW 595
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 144/287 (50%), Gaps = 14/287 (4%)
Query: 69 AFEVFSRV-KVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDN-VRPNEVTIVCVLSAC 126
A +VFS++ K + W +I G G A L+REM+ V P+ T ++ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 127 SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYN 186
+ + + LG IHS + + V +L+++Y+ CGD+ A +VF++M E+D+ +N
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 187 SLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRD 246
S+I G A +G+ EA+ ++ EM ++GI+P T V +L+AC+ G + LG + M +
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK- 250
Query: 247 YGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQ 306
G+ + ++DL +R GR EEA M + + + SL+ ++G + +
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNGFGKEAIE 309
Query: 307 IAKR------LLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
+ K LL C T+V + A + G KE + +M+E
Sbjct: 310 LFKYMESTEGLLPCEI----TFVGILYACSHCGMVKEGFEYFRRMRE 352
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 43/204 (21%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ +H ++K+GL N + L++LY +CG ++A LFDEM +
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD--------------- 285
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQR-DNVRPNEVTIV 120
K++V WT++I GL NG A++LF+ M+ + + P E+T V
Sbjct: 286 -----------------KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328
Query: 121 CVLSACSQLGALELG-----RWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFE 175
+L ACS G ++ G R Y + RI+ H G ++++ +R G + KA + +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIE--HF--GCMVDLLARAGQVKKAYEYIK 384
Query: 176 EMK-ERDVTTYNSLIAGLAMHGRS 198
M + +V + +L+ +HG S
Sbjct: 385 SMPMQPNVVIWRTLLGACTVHGDS 408
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/488 (42%), Positives = 306/488 (62%), Gaps = 2/488 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ HG VL+ G S + L+++Y KC A ++FD M VV ++ YV
Sbjct: 356 GKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSN-KTVVTWNSIVAGYV 414
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ-RDNVRPNEVTIV 120
E+G V+ A+E F + K+ V W +I GLV+ A+++F MQ ++ V + VT++
Sbjct: 415 ENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMM 474
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
+ SAC LGAL+L +WI+ Y+ K+ I L+ +G L++M+SRCGD + A+ +F + R
Sbjct: 475 SIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR 534
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
DV+ + + I +AM G + A+E+F +MI QG++P V FVG L ACSHGGLV G EIF
Sbjct: 535 DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIF 594
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
SM + +G+ P+ HYGC+VDLL R G EEA I +M + P+ ++ SLL+AC++ G
Sbjct: 595 YSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGN 654
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
+++ A+++ +G+YVLLSN YAS+G+W + ++R MKE G++K PG SSI+
Sbjct: 655 VEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQ 714
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
+ + HEF GD HP+ I + E+ Q G+ P VL D+++ EK + L+ H
Sbjct: 715 IRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRH 774
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SE+LA+ YGLIS+ TTIR+VKNLRVC+DCHS K + + R+II+RD NRFH+ G
Sbjct: 775 SEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQG 834
Query: 481 TCSCGDYW 488
CSCGD+W
Sbjct: 835 KCSCGDFW 842
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 44/254 (17%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G +IHG ++K+G + + LV Y +CGE
Sbjct: 153 GIQIHGLIVKMGYAKDLFVQNSLVHFYAECGE---------------------------- 184
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDN-VRPNEVTIV 120
+++A +VF + ++ V WT+MI G R A+DLF M RD V PN VT+V
Sbjct: 185 ----LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMV 240
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
CV+SAC++L LE G +++++ I++N ++ AL++MY +C ID A ++F+E
Sbjct: 241 CVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGAS 300
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS-----------H 229
++ N++ + G + EA+ +F M++ G+RP +++ + +++CS H
Sbjct: 301 NLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCH 360
Query: 230 GGLVDLGFEIFQSM 243
G ++ GFE + ++
Sbjct: 361 GYVLRNGFESWDNI 374
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 162/368 (44%), Gaps = 70/368 (19%)
Query: 46 ECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFR 105
E ND++ S +++ Y++ ++ A +F + AM VR G AL +F
Sbjct: 268 EVNDLMVSA-LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN 326
Query: 106 EMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165
M VRP+ ++++ +S+CSQL + G+ H Y+ ++ + + ALI+MY +C
Sbjct: 327 LMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCH 386
Query: 166 DIDKALQVFEEMKERDVTTYNSLIAGLAMHG--------------RSI------------ 199
D A ++F+ M + V T+NS++AG +G ++I
Sbjct: 387 RQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQ 446
Query: 200 -----EAVEMFREMINQ-GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQI 253
EA+E+F M +Q G+ VT + + +AC H G +DL I+ + ++ GI+ +
Sbjct: 447 GSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN-GIQLDV 505
Query: 254 EHYGCIVDLLSRVGRPEEA---YDFITNMKIA---------------------------- 282
+VD+ SR G PE A ++ +TN ++
Sbjct: 506 RLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQ 565
Query: 283 ---PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR--SADSGTYVLLSNAYASSGKWKE 337
PD + L+AC G +Q G++I +L S + Y + + +G +E
Sbjct: 566 GLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEE 625
Query: 338 AVQIRAKM 345
AVQ+ M
Sbjct: 626 AVQLIEDM 633
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 6/220 (2%)
Query: 48 NDVVASTVMINCYVEHGLVEN---AFEVFSRVKVKDT-VCWTAMIDGLVRNGEMARALDL 103
NDV T ++ E G E+ A EVF + T + ++I G +G A+ L
Sbjct: 62 NDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILL 121
Query: 104 FREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163
F M + P++ T LSAC++ A G IH + K + V +L++ Y+
Sbjct: 122 FLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAE 181
Query: 164 CGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMI-NQGIRPTKVTFVG 222
CG++D A +VF+EM ER+V ++ S+I G A + +AV++F M+ ++ + P VT V
Sbjct: 182 CGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVC 241
Query: 223 VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL 262
V++AC+ ++ G +++ + R+ GIE +VD+
Sbjct: 242 VISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDM 280
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/503 (42%), Positives = 305/503 (60%), Gaps = 48/503 (9%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EG+++H Q++K G + L+ LYG CG C D+
Sbjct: 169 EGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCG--------------CLDL---------- 204
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
A +VF + + V W +MID LVR GE AL LFREMQR + P+ T+
Sbjct: 205 --------ARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQ 255
Query: 121 CVLSACSQLGALELGRWIHSYMGKH---RIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177
VLSAC+ LG+L LG W H+++ + + ++ +V +LI MY +CG + A QVF+ M
Sbjct: 256 SVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGM 315
Query: 178 KERDVTTYNSLIAGLAMHGRSIEAVEMFREMIN--QGIRPTKVTFVGVLNACSHGGLVDL 235
++RD+ ++N++I G A HGR+ EA+ F M++ + +RP VTFVG+L AC+H G V+
Sbjct: 316 QKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNK 375
Query: 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSAC 295
G + F M RDY IEP +EHYGCIVDL++R G EA D + +M + PD ++ SLL AC
Sbjct: 376 GRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDAC 435
Query: 296 -KIHGKLQLGEQIAKRLLDCRSAD-------SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
K ++L E+IA+ ++ + + SG YVLLS YAS+ +W + +R M E
Sbjct: 436 CKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSE 495
Query: 348 AGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSP--STEVVL 405
G++KEPGCSSIE+N HEF GD HPQ +QIY++++ + ++ GY P S ++
Sbjct: 496 HGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLV 555
Query: 406 HDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRK 465
D KE++L +HSERLAI +GLI+ P T IR+ KNLRVCNDCH + KLI+ + +
Sbjct: 556 DATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTE 615
Query: 466 IIVRDRNRFHHFENGTCSCGDYW 488
IIVRDR RFHHF++G+CSC DYW
Sbjct: 616 IIVRDRVRFHHFKDGSCSCLDYW 638
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 148/362 (40%), Gaps = 62/362 (17%)
Query: 66 VENAFEVFSRVKVKDTVCWTAMIDGLVRN-GEMARALDLFREM-QRDNVRPNEVTIVCVL 123
V AF VF ++ + W +I + A L+R+M +R P++ T VL
Sbjct: 99 VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 158
Query: 124 SACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVT 183
AC+ + G+ +H + KH + V LI++Y CG +D A +VF+EM ER +
Sbjct: 159 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 218
Query: 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF------ 237
++NS+I L G A+++FREM + P T VL+AC+ G + LG
Sbjct: 219 SWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFL 277
Query: 238 --------------------------------EIFQSMTRDYGIEPQIEHYGCIVDLLSR 265
++FQ M + + + ++ +
Sbjct: 278 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR-----DLASWNAMILGFAT 332
Query: 266 VGRPEEAYDFITNM-----KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD--CRSAD 318
GR EEA +F M + P+ + LL AC G + G Q ++ C
Sbjct: 333 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 392
Query: 319 SGTYVLLSNAYASSGKWKEAVQIRAKM---KEAGVQKE--PGC----SSIEVNNEIHEFI 369
Y + + A +G EA+ + M +A + + C +S+E++ EI I
Sbjct: 393 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 452
Query: 370 LG 371
+G
Sbjct: 453 IG 454
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 48/236 (20%)
Query: 155 GALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMH-GRSIEAVEMFREMINQG- 212
G ++ + S D++ A +VF+ ++ +N+LI A R EA ++R+M+ +G
Sbjct: 87 GKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGE 146
Query: 213 IRPTKVTFVGVLNACS-----------------HG------------------GLVDLGF 237
P K TF VL AC+ HG G +DL
Sbjct: 147 SSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLAR 206
Query: 238 EIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMK--IAPDHIMLGSLLSAC 295
++F M E + + ++D L R G + A M+ PD + S+LSAC
Sbjct: 207 KVFDEMP-----ERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSAC 261
Query: 296 KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNA----YASSGKWKEAVQIRAKMKE 347
G L LG LL D VL+ N+ Y G + A Q+ M++
Sbjct: 262 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 317
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/490 (40%), Positives = 307/490 (62%), Gaps = 4/490 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR++H + ++ + LV++Y KCG A +FD + + ++ T M++ Y
Sbjct: 124 GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSI-RVKNTISWTAMVSGYA 182
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVR-PNEVTIV 120
+ G E A E+F + VK+ WTA+I G V++G+ A +F EM+R+ V + + +
Sbjct: 183 KSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLS 242
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
++ AC+ L A GR +H + D + ALI+MY++C D+ A +F M+ R
Sbjct: 243 SIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHR 302
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
DV ++ SLI G+A HG++ +A+ ++ +M++ G++P +VTFVG++ ACSH G V+ G E+F
Sbjct: 303 DVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELF 362
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
QSMT+DYGI P ++HY C++DLL R G +EA + I M PD +LLSACK G+
Sbjct: 363 QSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGR 422
Query: 301 LQLGEQIAKRLLDC-RSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSI 359
Q+G +IA L+ + D TY+LLSN YAS+ W + + R K+ E V+K+PG SS+
Sbjct: 423 GQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSV 482
Query: 360 EVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKL-EGYSPSTEVVLHDIEDWEKEWALA 418
EV E F G+ HP +E I++ +++L++ +++ GY P T +LHD+++ EKE L
Sbjct: 483 EVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLF 542
Query: 419 IHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFE 478
HSER A+ YGL+ P T IR+VKNLRVC DCH ++K I+ IT+R+IIVRD R+HHF+
Sbjct: 543 WHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFK 602
Query: 479 NGTCSCGDYW 488
G CSC D+W
Sbjct: 603 GGKCSCNDFW 612
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 112/248 (45%), Gaps = 41/248 (16%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
+ +H ++KLG+ LV +YGKCG A+Q+FDEMP
Sbjct: 22 AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPH--------------- 66
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARAL-DLFREMQRDNVRPNEVTIV 120
+D + W +++ L + + L +RP++
Sbjct: 67 -----------------RDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFS 109
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
++ AC+ LG+++ GR +H + + +V +L++MY++CG ++ A VF+ ++ +
Sbjct: 110 ALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVK 169
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK--VTFVGVLNACSHGGLVDLGFE 238
+ ++ ++++G A GR EA+E+FR I P K ++ +++ G F
Sbjct: 170 NTISWTAMVSGYAKSGRKEEALELFR------ILPVKNLYSWTALISGFVQSGKGLEAFS 223
Query: 239 IFQSMTRD 246
+F M R+
Sbjct: 224 VFTEMRRE 231
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 109/228 (47%), Gaps = 12/228 (5%)
Query: 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV 182
L C++ L + +H+++ K I + L+N+Y +CG ALQVF+EM RD
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 183 TTYNSLIAGL---AMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239
+ S++ L + G+++ + G+RP F ++ AC++ G +D G ++
Sbjct: 70 IAWASVLTALNQANLSGKTLSVFSS--VGSSSGLRPDDFVFSALVKACANLGSIDHGRQV 127
Query: 240 F-QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIH 298
+ +Y + ++ +VD+ ++ G A ++++ + I +++S
Sbjct: 128 HCHFIVSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSGYAKS 184
Query: 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346
G+ + ++ R+L ++ S T ++ + + SGK EA + +M+
Sbjct: 185 GRKEEALELF-RILPVKNLYSWTALI--SGFVQSGKGLEAFSVFTEMR 229
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/440 (44%), Positives = 288/440 (65%)
Query: 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ 108
D+ S+ +++ YV+ G + A F + V D V WT MI G + NGE RA +F +M+
Sbjct: 551 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMR 610
Query: 109 RDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID 168
V P+E TI + A S L ALE GR IH+ K + VG +L++MY++CG ID
Sbjct: 611 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSID 670
Query: 169 KALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228
A +F+ ++ ++T +N+++ GLA HG E +++F++M + GI+P KVTF+GVL+ACS
Sbjct: 671 DAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACS 730
Query: 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIML 288
H GLV ++ +SM DYGI+P+IEHY C+ D L R G ++A + I +M + M
Sbjct: 731 HSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMY 790
Query: 289 GSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348
+LL+AC++ G + G+++A +LL+ DS YVLLSN YA++ KW E R MK
Sbjct: 791 RTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGH 850
Query: 349 GVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDI 408
V+K+PG S IEV N+IH F++ D + Q E IY+K++++ + +K EGY P T+ L D+
Sbjct: 851 KVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDV 910
Query: 409 EDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIV 468
E+ EKE AL HSE+LA+ +GL+ST P T IRV+KNLRVC DCH+ +K IA + R+I++
Sbjct: 911 EEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970
Query: 469 RDRNRFHHFENGTCSCGDYW 488
RD NRFH F++G CSCGDYW
Sbjct: 971 RDANRFHRFKDGICSCGDYW 990
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 39/262 (14%)
Query: 5 IHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHG 64
HG K+GL + LV +Y K G+ K+ LF+EMP DVV +M+ Y+E G
Sbjct: 167 FHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPY-RDVVLWNLMLKAYLEMG 225
Query: 65 LVENAFEVFSRVKVKD------TVCWTAMIDG-----------------------LVRN- 94
E A ++ S T+ A I G + RN
Sbjct: 226 FKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNK 285
Query: 95 --------GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR 146
G+ + L F +M +V ++VT + +L+ ++ +L LG+ +H K
Sbjct: 286 GLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLG 345
Query: 147 IDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFR 206
+DL V +LINMY + A VF+ M ERD+ ++NS+IAG+A +G +EAV +F
Sbjct: 346 LDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFM 405
Query: 207 EMINQGIRPTKVTFVGVLNACS 228
+++ G++P + T VL A S
Sbjct: 406 QLLRCGLKPDQYTMTSVLKAAS 427
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 146/311 (46%), Gaps = 11/311 (3%)
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
+D ST +I+ Y + ++ A +F R D V W AM+ G ++ + + L LF M
Sbjct: 450 SDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALM 508
Query: 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
+ R ++ T+ V C L A+ G+ +H+Y K DL+ V +++MY +CGD+
Sbjct: 509 HKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDM 568
Query: 168 DKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227
A F+ + D + ++I+G +G A +F +M G+ P + T + A
Sbjct: 569 SAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKAS 628
Query: 228 SHGGLVDLGFEIF-QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDF---ITNMKIAP 283
S ++ G +I ++ + +P + +VD+ ++ G ++AY I M I
Sbjct: 629 SCLTALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMMNITA 686
Query: 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ-IR 342
+ ML L + LQL +Q+ + D T++ + +A + SG EA + +R
Sbjct: 687 WNAMLVGLAQHGEGKETLQLFKQMKSLGI---KPDKVTFIGVLSACSHSGLVSEAYKHMR 743
Query: 343 AKMKEAGVQKE 353
+ + G++ E
Sbjct: 744 SMHGDYGIKPE 754
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 149/359 (41%), Gaps = 45/359 (12%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+++H LKLGL + L+ +Y K +F A +FD M E
Sbjct: 334 GQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSE--------------- 378
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+D + W ++I G+ +NG A+ LF ++ R ++P++ T+
Sbjct: 379 -----------------RDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTS 421
Query: 122 VLSACSQLG-ALELGRWIHSYMGKHRIDLNHI----VGGALINMYSRCGDIDKALQVFEE 176
VL A S L L L + +H H I +N++ V ALI+ YSR + +A +FE
Sbjct: 422 VLKAASSLPEGLSLSKQVHV----HAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER 477
Query: 177 MKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLG 236
D+ +N+++AG + +++F M QG R T V C ++ G
Sbjct: 478 -HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQG 536
Query: 237 FEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACK 296
++ + G + + I+D+ + G A F + PD + +++S C
Sbjct: 537 KQVHAYAIKS-GYDLDLWVSSGILDMYVKCGDMSAA-QFAFDSIPVPDDVAWTTMISGCI 594
Query: 297 IHGKLQLGEQIAKRL-LDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354
+G+ + + ++ L D T L+ A + ++ QI A + +P
Sbjct: 595 ENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDP 653
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 37/224 (16%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ H ++L R L+ +Y KCG A ++FD+MP+
Sbjct: 58 GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPD--------------- 102
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGE-----MARALDLFREMQRDNVRPNE 116
+D V W +++ ++ E + +A LFR +++D V +
Sbjct: 103 -----------------RDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSR 145
Query: 117 VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176
+T+ +L C G + H Y K +D + V GAL+N+Y + G + + +FEE
Sbjct: 146 MTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEE 205
Query: 177 MKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF 220
M RDV +N ++ G EA+++ + G+ P ++T
Sbjct: 206 MPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 38/200 (19%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+GR+IH LKL ++ LV++Y KCG D
Sbjct: 636 QGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDD------------------------ 671
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
A+ +F R+++ + W AM+ GL ++GE L LF++M+ ++P++VT +
Sbjct: 672 --------AYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFI 723
Query: 121 CVLSACSQLGAL-ELGRWIHSYMGKHRI--DLNHIVGGALINMYSRCGDIDKALQVFEEM 177
VLSACS G + E + + S G + I ++ H L + R G + +A + E M
Sbjct: 724 GVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHY--SCLADALGRAGLVKQAENLIESM 781
Query: 178 K-ERDVTTYNSLIAGLAMHG 196
E + Y +L+A + G
Sbjct: 782 SMEASASMYRTLLAACRVQG 801
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 132 LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAG 191
L LG+ H+ + + + LI+MYS+CG + A +VF++M +RD+ ++NS++A
Sbjct: 55 LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114
Query: 192 LAMHGRSI-----EAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRD 246
A + +A +FR + + +++T +L C H G V E F
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYACK 173
Query: 247 YGIEPQIEHYGCIVDLLSRVGRPEE 271
G++ G +V++ + G+ +E
Sbjct: 174 IGLDGDEFVAGALVNIYLKFGKVKE 198
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/492 (40%), Positives = 305/492 (61%), Gaps = 37/492 (7%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G +IHG++ G S+ L++LY C DA ++FDE+P+ D V+ V+ +CY
Sbjct: 132 GLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPK-RDTVSWNVLFSCY- 189
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD---NVRPNEVT 118
+RN L LF +M+ D V+P+ VT
Sbjct: 190 ------------------------------LRNKRTRDVLVLFDKMKNDVDGCVKPDGVT 219
Query: 119 IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178
+ L AC+ LGAL+ G+ +H ++ ++ + + L++MYSRCG +DKA QVF M+
Sbjct: 220 CLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMR 279
Query: 179 ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFE 238
ER+V ++ +LI+GLAM+G EA+E F EM+ GI P + T G+L+ACSH GLV G
Sbjct: 280 ERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMM 339
Query: 239 IFQSM-TRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKI 297
F M + ++ I+P + HYGC+VDLL R ++AY I +M++ PD + +LL AC++
Sbjct: 340 FFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRV 399
Query: 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCS 357
HG ++LGE++ L++ ++ ++G YVLL N Y++ GKW++ ++R+ MKE + +PGCS
Sbjct: 400 HGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCS 459
Query: 358 SIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIE-DWEKEWA 416
+IE+ +HEFI+ D+ HP++E+IYK + E+ Q +K+ GY LH++E + EK +A
Sbjct: 460 AIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYA 519
Query: 417 LAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHH 476
L HSE+LAI +G++ T P TTIRV KNLR C DCH+ K ++++ R +IVRDR+RFHH
Sbjct: 520 LRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHH 579
Query: 477 FENGTCSCGDYW 488
F+ G+CSC D+W
Sbjct: 580 FKGGSCSCNDFW 591
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 5/182 (2%)
Query: 103 LFREMQRDNVRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161
LFR ++R++ P N ++ L C + G L G IH + + ++ L+++Y
Sbjct: 99 LFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLY 158
Query: 162 SRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQ---GIRPTKV 218
S C + A +VF+E+ +RD ++N L + + R+ + + +F +M N ++P V
Sbjct: 159 STCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGV 218
Query: 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278
T + L AC++ G +D G ++ + G+ + +V + SR G ++AY
Sbjct: 219 TCLLALQACANLGALDFGKQV-HDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYG 277
Query: 279 MK 280
M+
Sbjct: 278 MR 279
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/493 (40%), Positives = 316/493 (64%), Gaps = 13/493 (2%)
Query: 6 HGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGL 65
HG +K+G+ ++ L+++YGKCG + ++F+E+ E VV+ TV+++ V+
Sbjct: 134 HGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEE-KSVVSWTVVLDTVVKWEG 192
Query: 66 VENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ-RDNVRPNEVTIVCVLS 124
+E EVF + ++ V WT M+ G + G L+L EM R N VT+ +LS
Sbjct: 193 LERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLS 252
Query: 125 ACSQLGALELGRWIHSY-------MGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177
AC+Q G L +GRW+H Y MG+ + +VG AL++MY++CG+ID ++ VF M
Sbjct: 253 ACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLM 312
Query: 178 KERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237
++R+V T+N+L +GLAMHG+ ++MF +MI + ++P +TF VL+ACSH G+VD G+
Sbjct: 313 RKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGW 371
Query: 238 EIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKI 297
F S+ R YG+EP+++HY C+VDLL R G EEA + M + P+ ++LGSLL +C +
Sbjct: 372 RCFHSL-RFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSV 430
Query: 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCS 357
HGK+++ E+I + L+ ++ +L+SN Y + G+ A +R +++ G++K PG S
Sbjct: 431 HGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLS 490
Query: 358 SIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTE-VVLHDIEDW-EKEW 415
SI VN+ +H F GD HP+ ++IY K+ E+ + ++ GY P +V H D EKE
Sbjct: 491 SIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQ 550
Query: 416 ALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFH 475
AL HSE+LA+C+GL+ TKP T + V KNLR+C DCHS +K+++ + R+II+RDRNRFH
Sbjct: 551 ALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFH 610
Query: 476 HFENGTCSCGDYW 488
F+ G+CSC DYW
Sbjct: 611 QFKGGSCSCSDYW 623
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 152/372 (40%), Gaps = 71/372 (19%)
Query: 2 GREIHGQVLKLGLRSNRSTRLK--LVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINC 59
G+E+H + GL+ + L L + Y GE A +LFDE+P
Sbjct: 25 GKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIP-------------- 70
Query: 60 YVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI 119
+ KD V WT ++ R G + ++ LF EM+R V ++V++
Sbjct: 71 ----------------LSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSV 114
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG-------------- 165
VC+ C++L L + H K + + V AL++MY +CG
Sbjct: 115 VCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEE 174
Query: 166 -----------------DIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREM 208
+++ +VF EM ER+ + ++AG G + E +E+ EM
Sbjct: 175 KSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEM 234
Query: 209 INQ-GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYG------CIVD 261
+ + G VT +L+AC+ G + +G + + + + Y +VD
Sbjct: 235 VFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVD 294
Query: 262 LLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321
+ ++ G + + + M+ + + +L S +HGK ++ + +++ D T
Sbjct: 295 MYAKCGNIDSSMNVFRLMR-KRNVVTWNALFSGLAMHGKGRMVIDMFPQMIREVKPDDLT 353
Query: 322 YVLLSNAYASSG 333
+ + +A + SG
Sbjct: 354 FTAVLSACSHSG 365
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/466 (44%), Positives = 296/466 (63%), Gaps = 2/466 (0%)
Query: 24 LVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKV-KDTV 82
++ Y +CG+ + A F P VVA T MI Y++ VE A +F + V K+ V
Sbjct: 192 MISGYIECGDLEKASHFFKVAP-VRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLV 250
Query: 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYM 142
W AMI G V N L LFR M + +RPN + L CS+L AL+LGR IH +
Sbjct: 251 TWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIV 310
Query: 143 GKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAV 202
K + + +LI+MY +CG++ A ++FE MK++DV +N++I+G A HG + +A+
Sbjct: 311 SKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKAL 370
Query: 203 EMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL 262
+FREMI+ IRP +TFV VL AC+H GLV++G F+SM RDY +EPQ +HY C+VDL
Sbjct: 371 CLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDL 430
Query: 263 LSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTY 322
L R G+ EEA I +M P + G+LL AC++H ++L E A++LL S ++ Y
Sbjct: 431 LGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGY 490
Query: 323 VLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIY 382
V L+N YAS +W++ ++R +MKE+ V K PG S IE+ N++H F D HP+ + I+
Sbjct: 491 VQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIH 550
Query: 383 KKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVV 442
KK++EL++ +KL GY P E LH++E+ +KE L HSE+LA+ +G I + I+V
Sbjct: 551 KKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVF 610
Query: 443 KNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGDYW 488
KNLR+C DCH IK I+ I KR+IIVRD RFHHF++G+CSCGDYW
Sbjct: 611 KNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 48/246 (19%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR+IH V K L ++ + L+ +Y KCGE DA +LF+ M + DVVA MI+ Y
Sbjct: 303 GRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKK-KDVVAWNAMISGYA 361
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+HG + +AL LFREM + +RP+ +T V
Sbjct: 362 QHGNAD-------------------------------KALCLFREMIDNKIRPDWITFVA 390
Query: 122 VLSACSQLGALELG-RWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
VL AC+ G + +G + S + ++++ ++++ R G +++AL++ M R
Sbjct: 391 VLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450
Query: 181 D-VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239
+ +L+ +H +++E E E + Q LN+ + G V L I
Sbjct: 451 PHAAVFGTLLGACRVH-KNVELAEFAAEKLLQ------------LNSQNAAGYVQLA-NI 496
Query: 240 FQSMTR 245
+ S R
Sbjct: 497 YASKNR 502
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 163 RCGDIDKALQVFEEMKERDVTTYNSLIAGLAMH-GRSIEAVEMFREM 208
R GDID AL+VF M+ ++ T+NSL+ G++ R +EA ++F E+
Sbjct: 73 RSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEI 119
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/523 (39%), Positives = 314/523 (60%), Gaps = 42/523 (8%)
Query: 1 EGREIHGQVLKLGLRSNRS--TRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMIN 58
E REI ++ S RS T +V YG+ DA ++FD MPE +V + T M+
Sbjct: 190 EAREIFDEM------SERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEV-SWTSMLM 242
Query: 59 CYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARA------------------ 100
YV++G +E+A E+F + VK + AMI GL + GE+A+A
Sbjct: 243 GYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTV 302
Query: 101 -------------LDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI 147
LDLF MQ+ VRP T++ +LS C+ L +L G+ +H+ + + +
Sbjct: 303 IKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQF 362
Query: 148 DLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFRE 207
D++ V L+ MY +CG++ K+ +F+ +D+ +NS+I+G A HG EA+++F E
Sbjct: 363 DVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCE 422
Query: 208 M-INQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV 266
M ++ +P +VTFV L+ACS+ G+V+ G +I++SM +G++P HY C+VD+L R
Sbjct: 423 MPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRA 482
Query: 267 GRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326
GR EA + I +M + PD + GSLL AC+ H +L + E AK+L++ +SGTY+LLS
Sbjct: 483 GRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLS 542
Query: 327 NAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIR-HPQREQIYKKM 385
N YAS G+W + ++R MK V+K PGCS EV N++H F G I HP++E I K +
Sbjct: 543 NMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKIL 602
Query: 386 QELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNL 445
EL +++ GY+P LHD+++ EK +L HSERLA+ Y L+ IRV+KNL
Sbjct: 603 DELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNL 662
Query: 446 RVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGDYW 488
RVC+DCH+ IK+I+ + +R+II+RD NRFHHF NG CSC DYW
Sbjct: 663 RVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 141/303 (46%), Gaps = 22/303 (7%)
Query: 24 LVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVC 83
LV Y K GE +A ++FD MPE N VV+ T ++ YV +G V+ A +F ++ K+ V
Sbjct: 85 LVSGYMKNGEIDEARKVFDLMPERN-VVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVS 143
Query: 84 WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMG 143
WT M+ G +++G + A L+ EM D + + ++ + G ++ R I M
Sbjct: 144 WTVMLIGFLQDGRIDDACKLY-EMIPDK---DNIARTSMIHGLCKEGRVDEAREIFDEMS 199
Query: 144 KHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVE 203
+ + I ++ Y + +D A ++F+ M E+ ++ S++ G +GR +A E
Sbjct: 200 ERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEE 255
Query: 204 MFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLL 263
+F M ++P + +++ G + +F SM E + ++ +
Sbjct: 256 LFEVM---PVKPV-IACNAMISGLGQKGEIAKARRVFDSMK-----ERNDASWQTVIKIH 306
Query: 264 SRVGRPEEAYDFITNMK---IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320
R G EA D M+ + P L S+LS C L G+Q+ +L+ C+ D
Sbjct: 307 ERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQ-FDVD 365
Query: 321 TYV 323
YV
Sbjct: 366 VYV 368
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 148 DLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFRE 207
D N I L++ Y + G+ID+A +VF+ M ER+V ++ +L+ G +G+ A +F +
Sbjct: 76 DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWK 135
Query: 208 MINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG 267
M + V +G L G +D ++++ + I +G L + G
Sbjct: 136 MPEKNKVSWTVMLIGFL----QDGRIDDACKLYEMIPDKDNIARTSMIHG-----LCKEG 186
Query: 268 RPEEAYDFITNM 279
R +EA + M
Sbjct: 187 RVDEAREIFDEM 198
Score = 38.9 bits (89), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK 217
I SR G I +A ++F+ + ++++NS++AG + +A ++F EM ++ I
Sbjct: 24 ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI---- 79
Query: 218 VTFVGVLNACSHGGLVDLGFEIFQSM 243
+++ G+++ G +D ++F M
Sbjct: 80 ISWNGLVSGYMKNGEIDEARKVFDLM 105
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/491 (40%), Positives = 302/491 (61%), Gaps = 5/491 (1%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR+ H Q +L ++++Y KC A ++FDEMPE DV++ T +I Y
Sbjct: 168 GRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPE-RDVISWTELIAAYA 226
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
G +E A E+F + KD V WTAM+ G +N + AL+ F M++ +R +EVT+
Sbjct: 227 RVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAG 286
Query: 122 VLSACSQLGALELG-RWIHSYMGKHRIDLNHIV-GGALINMYSRCGDIDKALQVFEEMKE 179
+SAC+QLGA + R + +H+V G ALI+MYS+CG++++A+ VF M
Sbjct: 287 YISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNN 346
Query: 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLNACSHGGLVDLGFE 238
++V TY+S+I GLA HGR+ EA+ +F M+ Q I+P VTFVG L ACSH GLVD G +
Sbjct: 347 KNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQ 406
Query: 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIH 298
+F SM + +G++P +HY C+VDLL R GR +EA + I M + P + G+LL AC+IH
Sbjct: 407 VFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIH 466
Query: 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCS- 357
++ E A+ L + G Y+LLSN YAS+G W +++R +KE G++K P S
Sbjct: 467 NNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSW 526
Query: 358 SIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWAL 417
++ N ++H+F G++ HP +I K++EL + + + GY P V +D+ D K L
Sbjct: 527 VVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLIL 586
Query: 418 AIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHF 477
H+E+LA+ + L++T +TI ++KNLR+C DCH ++L + +T + II+RD RFHHF
Sbjct: 587 IQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHF 646
Query: 478 ENGTCSCGDYW 488
+G CSCGD+W
Sbjct: 647 RSGDCSCGDFW 657
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 135/334 (40%), Gaps = 67/334 (20%)
Query: 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVE 62
++IHG VL+ GL + KL+ K G V ++ Y
Sbjct: 66 KQIHGHVLRKGLDQSCYILTKLIRTLTKLG----------------------VPMDPY-- 101
Query: 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122
A V V+ ++ WTA+I G G+ A+ ++ M+++ + P T +
Sbjct: 102 ------ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSAL 155
Query: 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV 182
L AC + L LGR H+ + R VG +I+MY +C ID A +VF+EM ERDV
Sbjct: 156 LKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDV 215
Query: 183 TTYNSLIA-------------------------------GLAMHGRSIEAVEMFREMINQ 211
++ LIA G A + + EA+E F M
Sbjct: 216 ISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKS 275
Query: 212 GIRPTKVTFVGVLNACSHGG---LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268
GIR +VT G ++AC+ G D +I Q Y + ++D+ S+ G
Sbjct: 276 GIRADEVTVAGYISACAQLGASKYADRAVQIAQK--SGYSPSDHVVIGSALIDMYSKCGN 333
Query: 269 PEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQ 302
EEA + +M + S++ HG+ Q
Sbjct: 334 VEEAVNVFMSMN-NKNVFTYSSMILGLATHGRAQ 366
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/493 (40%), Positives = 306/493 (62%), Gaps = 7/493 (1%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
R I+ +++ +R + LV +Y G A + F +M ++ ST M++ Y
Sbjct: 231 NRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKM-SVRNLFVSTAMVSGYS 289
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+ G +++A +F + + KD VCWT MI V + AL +F EM ++P+ V++
Sbjct: 290 KCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFS 349
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
V+SAC+ LG L+ +W+HS + + ++ + ALINMY++CG +D VFE+M R+
Sbjct: 350 VISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRN 409
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V +++S+I L+MHG + +A+ +F M + + P +VTFVGVL CSH GLV+ G +IF
Sbjct: 410 VVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFA 469
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
SMT +Y I P++EHYGC+VDL R EA + I +M +A + ++ GSL+SAC+IHG+L
Sbjct: 470 SMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGEL 529
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
+LG+ AKR+L+ G VL+SN YA +W++ IR M+E V KE G S I+
Sbjct: 530 ELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQ 589
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
N + HEF++GD RH Q +IY K+ E+ +KL GY P VL D+E+ EK+ + HS
Sbjct: 590 NGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHS 649
Query: 422 ERLAICYGLISTKPYT------TIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFH 475
E+LA+C+GL++ + IR+VKNLRVC DCH KL++ + +R+IIVRDR RFH
Sbjct: 650 EKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFH 709
Query: 476 HFENGTCSCGDYW 488
++NG CSC DYW
Sbjct: 710 CYKNGLCSCRDYW 722
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 164/352 (46%), Gaps = 12/352 (3%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EG E+HG K+ + +++Y CG A +FDEM DVV MI Y
Sbjct: 129 EGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSH-RDVVTWNTMIERY 187
Query: 61 VEHGLVENAFEVFSRVK----VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE 116
GLV+ AF++F +K + D + ++ R G M ++ + ++VR +
Sbjct: 188 CRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDT 247
Query: 117 VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176
+ +++ + G +++ R M N V A+++ YS+CG +D A +F++
Sbjct: 248 HLLTALVTMYAGAGCMDMAREFFRKMSVR----NLFVSTAMVSGYSKCGRLDDAQVIFDQ 303
Query: 177 MKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLG 236
+++D+ + ++I+ EA+ +F EM GI+P V+ V++AC++ G++D
Sbjct: 304 TEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKA 363
Query: 237 FEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACK 296
+ S G+E ++ ++++ ++ G + D M + + S+++A
Sbjct: 364 -KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALS 421
Query: 297 IHGKLQLGEQIAKRL-LDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
+HG+ + R+ + + T+V + + SG +E +I A M +
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTD 473
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 134/290 (46%), Gaps = 14/290 (4%)
Query: 69 AFEVFSRV-KVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS 127
A VFS + +++ + + L R+ E + ++ ++ R ++ + + +L A S
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122
Query: 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNS 187
++ AL G +H K + V ++MY+ CG I+ A VF+EM RDV T+N+
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182
Query: 188 LIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY 247
+I G EA ++F EM + + P ++ +++AC G + I++ + +
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN- 241
Query: 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQ----L 303
+ +V + + G + A +F M + + + +++S G+L +
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR-NLFVSTAMVSGYSKCGRLDDAQVI 300
Query: 304 GEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKE 353
+Q K+ L C + + +AY S +EA+++ +M +G++ +
Sbjct: 301 FDQTEKKDLVC-------WTTMISAYVESDYPQEALRVFEEMCCSGIKPD 343
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/437 (43%), Positives = 285/437 (65%), Gaps = 2/437 (0%)
Query: 54 TVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVR 113
T +++ YV+ G VE A +VFS + KD V W+AM+ G + GE A+ +F E+ + ++
Sbjct: 432 TALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIK 491
Query: 114 PNEVTIVCVLSACSQLGA-LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQ 172
PNE T +L+ C+ A + G+ H + K R+D + V AL+ MY++ G+I+ A +
Sbjct: 492 PNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEE 551
Query: 173 VFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGL 232
VF+ +E+D+ ++NS+I+G A HG++++A+++F+EM + ++ VTF+GV AC+H GL
Sbjct: 552 VFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGL 611
Query: 233 VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLL 292
V+ G + F M RD I P EH C+VDL SR G+ E+A I NM + ++L
Sbjct: 612 VEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTIL 671
Query: 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352
+AC++H K +LG A++++ + DS YVLLSN YA SG W+E ++R M E V+K
Sbjct: 672 AACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKK 731
Query: 353 EPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWE 412
EPG S IEV N+ + F+ GD HP ++QIY K+++L +K GY P T VL DI+D
Sbjct: 732 EPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEH 791
Query: 413 KEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRN 472
KE LA HSERLAI +GLI+T + + ++KNLRVC DCH +IKLIA I +R+I+VRD N
Sbjct: 792 KEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSN 851
Query: 473 RFHHF-ENGTCSCGDYW 488
RFHHF +G CSCGD+W
Sbjct: 852 RFHHFSSDGVCSCGDFW 868
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 173/378 (45%), Gaps = 71/378 (18%)
Query: 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEH 63
++H V+K G +++ R L+ Y KC DA++LF E I C
Sbjct: 316 QLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKE-------------IGC---- 358
Query: 64 GLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVL 123
V + V WTAMI G ++N A+DLF EM+R VRPNE T +L
Sbjct: 359 --------------VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVIL 404
Query: 124 SACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVT 183
+A + E +H+ + K + + VG AL++ Y + G +++A +VF + ++D+
Sbjct: 405 TALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIV 460
Query: 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS------------HGG 231
+++++AG A G + A++MF E+ GI+P + TF +LN C+ HG
Sbjct: 461 AWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGF 520
Query: 232 LV----DLGFEIFQSMTRDYGIEPQIE---------------HYGCIVDLLSRVGRPEEA 272
+ D + ++ Y + IE + ++ ++ G+ +A
Sbjct: 521 AIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKA 580
Query: 273 YDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLL-DCRSADSGTY-VLLSN 327
D M K+ D + + +AC G ++ GE+ ++ DC+ A + + + +
Sbjct: 581 LDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVD 640
Query: 328 AYASSGKWKEAVQIRAKM 345
Y+ +G+ ++A+++ M
Sbjct: 641 LYSRAGQLEKAMKVIENM 658
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 161/374 (43%), Gaps = 69/374 (18%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR++H Q +K G + S LV+ Y K FKD +
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRK---------------------- 149
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
VF +K ++ V WT +I G RN L LF MQ + +PN T
Sbjct: 150 ----------VFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAA 199
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
L ++ G G +H+ + K+ +D V +LIN+Y +CG++ KA +F++ + +
Sbjct: 200 ALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS 259
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS-----------HG 230
V T+NS+I+G A +G +EA+ MF M +R ++ +F V+ C+ H
Sbjct: 260 VVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHC 319
Query: 231 GLVDLGFEIFQSMTRDYGIEPQ-----------IEHYGCIVDLLSRVGR---------PE 270
+V GF Q++ + + GC+ +++S E
Sbjct: 320 SVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKE 379
Query: 271 EAYDFITNMK---IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327
EA D + MK + P+ +L+A + ++ Q+ K + RS+ GT +L +
Sbjct: 380 EAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYE-RSSTVGTALL--D 436
Query: 328 AYASSGKWKEAVQI 341
AY GK +EA ++
Sbjct: 437 AYVKLGKVEEAAKV 450
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 86/148 (58%), Gaps = 2/148 (1%)
Query: 53 STVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNV 112
S+ ++ Y + G +E+A EVF R + KD V W +MI G ++G+ +ALD+F+EM++ V
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592
Query: 113 RPNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RIDLNHIVGGALINMYSRCGDIDKAL 171
+ + VT + V +AC+ G +E G M + +I ++++YSR G ++KA+
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAM 652
Query: 172 QVFEEMKERDVTT-YNSLIAGLAMHGRS 198
+V E M +T + +++A +H ++
Sbjct: 653 KVIENMPNPAGSTIWRTILAACRVHKKT 680
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/491 (41%), Positives = 301/491 (61%), Gaps = 15/491 (3%)
Query: 13 GLRSNRSTRLKLVELYGKCGEF--KDAMQLFDEMPECN-DVVASTVMINCYVEHGLVENA 69
GL +N +T +V + G F K+A+ F + D +++ Y G ++ A
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIA 459
Query: 70 FEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ-----------RDNVRPNEVT 118
+F +++ +D V W MI G V + AL L +MQ R +++PN +T
Sbjct: 460 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 519
Query: 119 IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178
++ +L +C+ L AL G+ IH+Y K+ + + VG AL++MY++CG + + +VF+++
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579
Query: 179 ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFE 238
+++V T+N +I MHG EA+++ R M+ QG++P +VTF+ V ACSH G+VD G
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639
Query: 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHI-MLGSLLSACKI 297
IF M DYG+EP +HY C+VDLL R GR +EAY + M + SLL A +I
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699
Query: 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCS 357
H L++GE A+ L+ + YVLL+N Y+S+G W +A ++R MKE GV+KEPGCS
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759
Query: 358 SIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWAL 417
IE +E+H+F+ GD HPQ E++ ++ L + ++ EGY P T VLH++E+ EKE L
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILL 819
Query: 418 AIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHF 477
HSE+LAI +G+++T P T IRV KNLRVCNDCH K I+ I R+II+RD RFH F
Sbjct: 820 CGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRF 879
Query: 478 ENGTCSCGDYW 488
+NGTCSCGDYW
Sbjct: 880 KNGTCSCGDYW 890
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 37/242 (15%)
Query: 2 GREIHGQVLKLGLRSNRSTRLK-LVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
G++IH V K G + T LV LY KCG+F
Sbjct: 116 GKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDF-------------------------- 149
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
G V ++VF R+ ++ V W ++I L + AL+ FR M +NV P+ T+V
Sbjct: 150 ---GAV---YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLV 203
Query: 121 CVLSACSQLG---ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177
V++ACS L L +G+ +H+Y G + +LN + L+ MY + G + + +
Sbjct: 204 SVVTACSNLPMPEGLMMGKQVHAY-GLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSF 262
Query: 178 KERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237
RD+ T+N++++ L + + +EA+E REM+ +G+ P + T VL ACSH ++ G
Sbjct: 263 GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322
Query: 238 EI 239
E+
Sbjct: 323 EL 324
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 121/242 (50%), Gaps = 14/242 (5%)
Query: 46 ECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFR 105
E N + +T ++ Y + G + ++ + +D V W ++ L +N ++ AL+ R
Sbjct: 233 ELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 291
Query: 106 EMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RIDLNHIVGGALINMYSRC 164
EM + V P+E TI VL ACS L L G+ +H+Y K+ +D N VG AL++MY C
Sbjct: 292 EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 351
Query: 165 GDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREM-INQGIRPTKVTFVGV 223
+ +VF+ M +R + +N++IAG + + EA+ +F M + G+ T GV
Sbjct: 352 KQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411
Query: 224 LNACSHGGLVDL-----GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278
+ AC G GF + + + RD ++ ++D+ SR+G+ + A
Sbjct: 412 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQ------NTLMDMYSRLGKIDIAMRIFGK 465
Query: 279 MK 280
M+
Sbjct: 466 ME 467
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 129/276 (46%), Gaps = 36/276 (13%)
Query: 84 WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMG 143
W ++ VR+ + A+ + +M ++P+ +L A + L +ELG+ IH+++
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 144 KHRIDLNHI-VGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAV 202
K ++ + V L+N+Y +CGD +VF+ + ER+ ++NSLI+ L + A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 203 EMFREMINQGIRPTKVTFVGVLNACSH----GGLV-------------DLGFEIFQSMTR 245
E FR M+++ + P+ T V V+ ACS+ GL+ +L I ++
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244
Query: 246 DYGIEPQIEHYGCIV------------DLLSRVGRPE---EAYDFITNM---KIAPDHIM 287
YG ++ ++ +LS + + E EA +++ M + PD
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304
Query: 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323
+ S+L AC L+ G+++ L S D ++V
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 125/265 (47%), Gaps = 46/265 (17%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+G+EIH +K L ++ + LV++Y KCG + + ++FD++P+ N V+ V+I Y
Sbjct: 535 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKN-VITWNVIIMAY 593
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
HG NG+ A+DL R M V+PNEVT +
Sbjct: 594 GMHG-----------------------------NGQ--EAIDLLRMMMVQGVKPNEVTFI 622
Query: 121 CVLSACSQLGALELGRWIHSYMGK-HRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179
V +ACS G ++ G I M + ++ + ++++ R G I +A Q+ M
Sbjct: 623 SVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLM-NMMP 681
Query: 180 RDVT---TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT-FVGVLNACSHGGLVDL 235
RD ++SL+ +H ++E E+ + + Q + P + +V + N S GL D
Sbjct: 682 RDFNKAGAWSSLLGASRIH-NNLEIGEIAAQNLIQ-LEPNVASHYVLLANIYSSAGLWDK 739
Query: 236 GFEIFQSMTRDYGI--EP---QIEH 255
E+ ++M ++ G+ EP IEH
Sbjct: 740 ATEVRRNM-KEQGVRKEPGCSWIEH 763
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/491 (42%), Positives = 315/491 (64%), Gaps = 9/491 (1%)
Query: 5 IHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE----CNDVVASTVMINCY 60
++ ++ LG+R + T +V+ + G+F L + + C +VA T ++ Y
Sbjct: 96 LYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVA-TELVMMY 154
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
++ G + +A +F ++VKD V W A + V+ G A AL+ F +M D V+ + T+V
Sbjct: 155 MKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVV 214
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
+LSAC QLG+LE+G I+ K ID N IV A ++M+ +CG+ + A +FEEMK+R
Sbjct: 215 SMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQR 274
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
+V +++++I G AM+G S EA+ +F M N+G+RP VTF+GVL+ACSH GLV+ G F
Sbjct: 275 NVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYF 334
Query: 241 QSM--TRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIH 298
M + D +EP+ EHY C+VDLL R G EEAY+FI M + PD + G+LL AC +H
Sbjct: 335 SLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVH 394
Query: 299 GKLQLGEQIAKRLLDCRSADSGTY-VLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCS 357
+ LG+++A L++ + D G+Y VLLSN YA++GKW ++R+KM++ G +K S
Sbjct: 395 RDMILGQKVADVLVET-APDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYS 453
Query: 358 SIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWAL 417
S+E +IH F GD HPQ + IY+K+ E+ + ++ GY P T V HD+E EKE +L
Sbjct: 454 SVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSL 513
Query: 418 AIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHF 477
+ HSE+LAI +GLI +P IRV+KNLR C+DCH+ K ++++T +II+RD+NRFHHF
Sbjct: 514 SHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHF 573
Query: 478 ENGTCSCGDYW 488
NG CSC ++W
Sbjct: 574 RNGVCSCKEFW 584
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 122/278 (43%), Gaps = 33/278 (11%)
Query: 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVE 62
++IH VL+ G S +L+E G+ A Q+FDEM +
Sbjct: 28 KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHK---------------- 71
Query: 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122
R+ W + G VRN +L L+++M+ VRP+E T V
Sbjct: 72 -----------PRI-----FLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFV 115
Query: 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV 182
+ A SQLG G +H+++ K+ IV L+ MY + G++ A +FE M+ +D+
Sbjct: 116 VKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDL 175
Query: 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQS 242
+N+ +A G S A+E F +M ++ T V +L+AC G +++G EI+
Sbjct: 176 VAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDR 235
Query: 243 MTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMK 280
R I+ I +D+ + G E A MK
Sbjct: 236 -ARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMK 272
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 36/198 (18%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G EI+ + K + N ++++ KCG + A LF+EM +
Sbjct: 229 GEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQ--------------- 273
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
++ V W+ MI G NG+ AL LF MQ + +RPN VT +
Sbjct: 274 -----------------RNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLG 316
Query: 122 VLSACSQLGALELGRWIHSYM---GKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178
VLSACS G + G+ S M ++ ++++ R G +++A + ++M
Sbjct: 317 VLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMP 376
Query: 179 -ERDVTTYNSLIAGLAMH 195
E D + +L+ A+H
Sbjct: 377 VEPDTGIWGALLGACAVH 394
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Query: 165 GDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVL 224
GD+ A QVF+EM + + +N+L G + E++ ++++M + G+RP + T+ V+
Sbjct: 57 GDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVV 116
Query: 225 NACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGC-------IVDLLSRVGRPEEAYDFIT 277
A S G GF + + + YG +GC +V + + G A
Sbjct: 117 KAISQLGDFSCGFALHAHVVK-YG-------FGCLGIVATELVMMYMKFGELSSAEFLFE 168
Query: 278 NMKIAPDHIMLGSLLSACKIHGKLQLG-EQIAKRLLDCRSADSGTYVLLSNAYASSGKWK 336
+M++ D + + L+ C G + E K D DS T V + +A G +
Sbjct: 169 SMQV-KDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLE 227
Query: 337 --EAVQIRAKMKE 347
E + RA+ +E
Sbjct: 228 IGEEIYDRARKEE 240
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/462 (41%), Positives = 285/462 (61%), Gaps = 2/462 (0%)
Query: 28 YGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAM 87
Y G +DA + F+ MP V+A MI + E G + A VF ++ +D W M
Sbjct: 244 YTLSGRIEDAEEFFEVMP-MKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGM 302
Query: 88 IDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI 147
I R G ALDLF +MQ+ VRP+ +++ +LS C+ L +L+ GR +H+++ + +
Sbjct: 303 IKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362
Query: 148 DLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFRE 207
D + V L+ MY +CG++ KA VF+ +D+ +NS+I+G A HG EA+++F E
Sbjct: 363 DDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHE 422
Query: 208 MINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG 267
M + G P KVT + +L ACS+ G ++ G EIF+SM + + P +EHY C VD+L R G
Sbjct: 423 MPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAG 482
Query: 268 RPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327
+ ++A + I +M I PD + G+LL ACK H +L L E AK+L + ++GTYVLLS+
Sbjct: 483 QVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSS 542
Query: 328 AYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIR-HPQREQIYKKMQ 386
AS KW + +R M+ V K PGCS IEV ++H F G I+ HP++ I ++
Sbjct: 543 INASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLE 602
Query: 387 ELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLR 446
+ +++ GYSP VLHD+++ EK +L+ HSERLA+ YGL+ IRV+KNLR
Sbjct: 603 KTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLR 662
Query: 447 VCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGDYW 488
VC DCH+ IKLI+ +T+R+II+RD NRFHHF NG CSC DYW
Sbjct: 663 VCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 47/347 (13%)
Query: 24 LVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVC 83
+V Y G K+A QLFDEM E N VV+ +++ Y+++ ++ A VF + ++ V
Sbjct: 54 IVSGYFSNGLPKEARQLFDEMSERN-VVSWNGLVSGYIKNRMIVEARNVFELMPERNVVS 112
Query: 84 WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMG 143
WTAM+ G ++ G + A LF M NEV+ + G ++ R ++ M
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRMPER----NEVSWTVMFGGLIDDGRIDKARKLYDMMP 168
Query: 144 -KHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAV 202
K + +++GG R G +D+A +F+EM+ER+V T+ ++I G + R A
Sbjct: 169 VKDVVASTNMIGG-----LCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVAR 223
Query: 203 EMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ-----------SMTRDYGIEP 251
++F M + T+V++ +L + G ++ E F+ +M +G
Sbjct: 224 KLFEVMPEK----TEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVG 279
Query: 252 QIEHYGCIVDLL---------------SRVGRPEEAYDFITNMK---IAPDHIMLGSLLS 293
+I + DL+ R G EA D M+ + P L S+LS
Sbjct: 280 EISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILS 339
Query: 294 ACKIHGKLQLGEQIAKRLLDCRSADSGTYV--LLSNAYASSGKWKEA 338
C LQ G Q+ L+ C+ D YV +L Y G+ +A
Sbjct: 340 VCATLASLQYGRQVHAHLVRCQ-FDDDVYVASVLMTMYVKCGELVKA 385
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 168/370 (45%), Gaps = 41/370 (11%)
Query: 8 QVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVE 67
V +L N + +V+ Y + G +A LF MPE N+V + TVM ++ G ++
Sbjct: 100 NVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV-SWTVMFGGLIDDGRID 158
Query: 68 NAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS 127
A +++ + VKD V T MI GL R G + A +F EM+ NV VT +++
Sbjct: 159 KARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNV----VTWTTMITGYR 214
Query: 128 QLGALELGR-------------WIHSYMG---KHRIDLNH-----------IVGGALINM 160
Q +++ R W +G RI+ I A+I
Sbjct: 215 QNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVG 274
Query: 161 YSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF 220
+ G+I KA +VF+ M++RD T+ +I G +EA+++F +M QG+RP+ +
Sbjct: 275 FGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSL 334
Query: 221 VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMK 280
+ +L+ C+ + G ++ + R + + ++ + + G +A + +
Sbjct: 335 ISILSVCATLASLQYGRQVHAHLVR-CQFDDDVYVASVLMTMYVKCGELVKA-KLVFDRF 392
Query: 281 IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA----DSGTYVLLSNAYASSGKWK 336
+ D IM S++S HG LGE+ K + S+ + T + + A + +GK +
Sbjct: 393 SSKDIIMWNSIISGYASHG---LGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLE 449
Query: 337 EAVQIRAKMK 346
E ++I M+
Sbjct: 450 EGLEIFESME 459
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 34/198 (17%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR++H +++ + L+ +Y KCGE A +FD D++ +I+ Y
Sbjct: 350 GRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRF-SSKDIIMWNSIISGYA 408
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
HGL E AL +F EM PN+VT++
Sbjct: 409 SHGLGEE-------------------------------ALKIFHEMPSSGTMPNKVTLIA 437
Query: 122 VLSACSQLGALELGRWIHSYM-GKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK-E 179
+L+ACS G LE G I M K + ++M R G +DKA+++ E M +
Sbjct: 438 ILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIK 497
Query: 180 RDVTTYNSLIAGLAMHGR 197
D T + +L+ H R
Sbjct: 498 PDATVWGALLGACKTHSR 515
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 137/347 (39%), Gaps = 63/347 (18%)
Query: 53 STVMINCYVEH------GLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFRE 106
++ +NC E G + A + F ++ K W +++ G NG A LF E
Sbjct: 14 TSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDE 73
Query: 107 MQRDNV---------------------------RPNEVTIVCVLSACSQLGALELGRWIH 139
M NV N V+ ++ Q G + +
Sbjct: 74 MSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLF 133
Query: 140 SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSI 199
M + ++ G LI+ G IDKA ++++ M +DV ++I GL GR
Sbjct: 134 WRMPERNEVSWTVMFGGLID----DGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189
Query: 200 EAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCI 259
EA +F EM + + VT+ ++ VD+ ++F+ M P+
Sbjct: 190 EARLIFDEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVM-------PEKTEVSWT 238
Query: 260 VDLLSRV--GRPEEAYDFITNMKIAPDHIMLGSLLSACK--IHGKLQLGE-QIAKRLLDC 314
LL GR E+A +F M + P + AC I G ++GE A+R+ D
Sbjct: 239 SMLLGYTLSGRIEDAEEFFEVMPMKP--------VIACNAMIVGFGEVGEISKARRVFDL 290
Query: 315 -RSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKE-PGCSSI 359
D+ T+ + AY G EA+ + A+M++ GV+ P SI
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISI 337
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/441 (43%), Positives = 285/441 (64%), Gaps = 1/441 (0%)
Query: 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ 108
D+ ++ Y + GLV++A VF+ + D + W +I G +NG + A++++ M+
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIME 442
Query: 109 RDN-VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
+ + N+ T V VL ACSQ GAL G +H + K+ + L+ V +L +MY +CG +
Sbjct: 443 EEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRL 502
Query: 168 DKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227
+ AL +F ++ + +N+LIA HG +AV +F+EM+++G++P +TFV +L+AC
Sbjct: 503 EDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSAC 562
Query: 228 SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIM 287
SH GLVD G F+ M DYGI P ++HYGC+VD+ R G+ E A FI +M + PD +
Sbjct: 563 SHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASI 622
Query: 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
G+LLSAC++HG + LG+ ++ L + G +VLLSN YAS+GKW+ +IR+
Sbjct: 623 WGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHG 682
Query: 348 AGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHD 407
G++K PG SS+EV+N++ F G+ HP E++Y+++ L+ +K+ GY P VL D
Sbjct: 683 KGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQD 742
Query: 408 IEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKII 467
+ED EKE L HSERLAI + LI+T TTIR+ KNLRVC DCHS+ K I+ IT+R+II
Sbjct: 743 VEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREII 802
Query: 468 VRDRNRFHHFENGTCSCGDYW 488
VRD NRFHHF+NG CSCGDYW
Sbjct: 803 VRDSNRFHHFKNGVCSCGDYW 823
Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 151/289 (52%), Gaps = 5/289 (1%)
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
+++ S +I+ Y E G + + +VF R+ V+D + W ++I N + RA+ LF+EM
Sbjct: 280 SELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM 339
Query: 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI-VGGALINMYSRCGD 166
+ ++P+ +T++ + S SQLG + R + + + L I +G A++ MY++ G
Sbjct: 340 RLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGL 399
Query: 167 IDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLN 225
+D A VF + DV ++N++I+G A +G + EA+EM+ M +G I + T+V VL
Sbjct: 400 VDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLP 459
Query: 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDH 285
ACS G + G ++ + ++ G+ + + D+ + GR E+A + +
Sbjct: 460 ACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRV-NS 517
Query: 286 IMLGSLLSACKIHGKLQLGEQIAKRLLD-CRSADSGTYVLLSNAYASSG 333
+ +L++ HG + + K +LD D T+V L +A + SG
Sbjct: 518 VPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 566
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 50/334 (14%)
Query: 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ 108
DV + +I+ Y + V NA +F + V+D W AMI G ++G AL L ++
Sbjct: 184 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR 243
Query: 109 RDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID 168
+ VT+V +LSAC++ G G IHSY KH ++ V LI++Y+ G +
Sbjct: 244 A----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299
Query: 169 KALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFV------- 221
+VF+ M RD+ ++NS+I ++ + + A+ +F+EM I+P +T +
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359
Query: 222 --GVLNAC---------------------------SHGGLVDLGFEIFQSMTRDYGIEPQ 252
G + AC + GLVD +F +
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-----NTD 414
Query: 253 IEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPDHIMLGSLLSACKIHGKLQLGEQIA 308
+ + I+ ++ G EA + M +IA + S+L AC G L+ G ++
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 474
Query: 309 KRLL-DCRSADSGTYVLLSNAYASSGKWKEAVQI 341
RLL + D L++ Y G+ ++A+ +
Sbjct: 475 GRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSL 508
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 38/200 (19%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+G ++HG++LK GL + L ++YGKCG +DA+ LF ++P N V +T +I C+
Sbjct: 469 QGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNT-LIACH 527
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
HG +GE +A+ LF+EM + V+P+ +T V
Sbjct: 528 GFHG-----------------------------HGE--KAVMLFKEMLDEGVKPDHITFV 556
Query: 121 CVLSACSQLGALELGRWIHSYMGKH---RIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177
+LSACS G ++ G+W M L H G +++MY R G ++ AL+ + M
Sbjct: 557 TLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHY--GCMVDMYGRAGQLETALKFIKSM 614
Query: 178 K-ERDVTTYNSLIAGLAMHG 196
+ D + + +L++ +HG
Sbjct: 615 SLQPDASIWGALLSACRVHG 634
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 119/257 (46%), Gaps = 16/257 (6%)
Query: 46 ECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNG---EMARALD 102
+ +V S ++N Y G V A F ++ +D W MI G R G E+ R
Sbjct: 82 QIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFS 141
Query: 103 LFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162
LF M + P+ T VL AC + G IH K + V +LI++YS
Sbjct: 142 LF--MLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYS 196
Query: 163 RCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFV 221
R + A +F+EM RD+ ++N++I+G G + EA+ + + G+R VT V
Sbjct: 197 RYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVV 251
Query: 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKI 281
+L+AC+ G + G I S + +G+E ++ ++DL + GR + M +
Sbjct: 252 SLLSACTEAGDFNRGVTI-HSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV 310
Query: 282 APDHIMLGSLLSACKIH 298
D I S++ A +++
Sbjct: 311 R-DLISWNSIIKAYELN 326
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 15/208 (7%)
Query: 150 NHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFR-EM 208
N + L+N+Y G++ A F+ ++ RDV +N +I+G G S E + F M
Sbjct: 85 NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM 144
Query: 209 INQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268
++ G+ P TF VL AC ++D G +I + +G + ++ L SR
Sbjct: 145 LSSGLTPDYRTFPSVLKACR--TVID-GNKI-HCLALKFGFMWDVYVAASLIHLYSR--- 197
Query: 269 PEEAYDFITNMKIAPDHIMLGSLLS-ACKIHGKLQLGEQIAKRLLD--CRSADSGTYVLL 325
Y + N +I D + + + S I G Q G L R+ DS T V L
Sbjct: 198 ----YKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSL 253
Query: 326 SNAYASSGKWKEAVQIRAKMKEAGVQKE 353
+A +G + V I + + G++ E
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESE 281
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/489 (40%), Positives = 293/489 (59%), Gaps = 14/489 (2%)
Query: 8 QVLKLGLRSNRST-----RLKLVELYGKCGEFKDAMQLFDEMPEC---NDVVASTVMINC 59
Q+L+ G N T + E G CG QL +C ++V + +++
Sbjct: 151 QMLRFGYSPNEFTLSSVIKAAAAERRGCCGH-----QLHGFCVKCGFDSNVHVGSALLDL 205
Query: 60 YVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI 119
Y +GL+++A VF ++ ++ V W A+I G R +AL+LF+ M RD RP+ +
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179
+ ACS G LE G+W+H+YM K L G L++MY++ G I A ++F+ + +
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325
Query: 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239
RDV ++NSL+ A HG EAV F EM GIRP +++F+ VL ACSH GL+D G+
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385
Query: 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG 299
++ M +D GI P+ HY +VDLL R G A FI M I P + +LL+AC++H
Sbjct: 386 YELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHK 444
Query: 300 KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSI 359
+LG A+ + + D G +V+L N YAS G+W +A ++R KMKE+GV+KEP CS +
Sbjct: 445 NTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWV 504
Query: 360 EVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAI 419
E+ N IH F+ D RHPQRE+I +K +E+ +K GY P T V+ ++ E+E L
Sbjct: 505 EIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQY 564
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSE++A+ + L++T P +TI + KN+RVC DCH+ IKL + + R+IIVRD NRFHHF++
Sbjct: 565 HSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624
Query: 480 GTCSCGDYW 488
G CSC DYW
Sbjct: 625 GNCSCKDYW 633
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 142/304 (46%), Gaps = 36/304 (11%)
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
+D+V ++N Y + G +E A +VF ++ +D V WT +I G ++ AL F +M
Sbjct: 93 HDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQM 152
Query: 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
R PNE T+ V+ A + G +H + K D N VG AL+++Y+R G +
Sbjct: 153 LRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM 212
Query: 168 DKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227
D A VF+ ++ R+ ++N+LIAG A + +A+E+F+ M+ G RP+ ++ + AC
Sbjct: 213 DDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGAC 272
Query: 228 SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIM 287
S G ++ G + M + E+ F N +
Sbjct: 273 SSTGFLEQGKWVHAYMIKS----------------------GEKLVAFAGN-------TL 303
Query: 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
L + IH ++ +++AKR D ++ L AYA G KEAV +M+
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKR-------DVVSWNSLLTAYAQHGFGKEAVWWFEEMRR 356
Query: 348 AGVQ 351
G++
Sbjct: 357 VGIR 360
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 119/266 (44%), Gaps = 40/266 (15%)
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
+L C+ L GR +H+++ + + ++G L+NMY++CG +++A +VFE+M +RD
Sbjct: 66 LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS-----------HG 230
T+ +LI+G + H R +A+ F +M+ G P + T V+ A + HG
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHG 185
Query: 231 GLVDLGFE--------IFQSMTRDYGIEPQIE------------HYGCIVDLLSRVGRPE 270
V GF+ + TR YG+ + + ++ +R E
Sbjct: 186 FCVKCGFDSNVHVGSALLDLYTR-YGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTE 244
Query: 271 EAYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS---ADSGTYVL 324
+A + M P H SL AC G L+ G+ + ++ A +G +L
Sbjct: 245 KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLL 304
Query: 325 LSNAYASSGKWKEAVQIRAKMKEAGV 350
+ YA SG +A +I ++ + V
Sbjct: 305 --DMYAKSGSIHDARKIFDRLAKRDV 328
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 37/198 (18%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+G+ +H ++K G + L+++Y K G DA ++FD + + DVV+ ++ Y
Sbjct: 280 QGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK-RDVVSWNSLLTAY 338
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
+HG K+ V W F EM+R +RPNE++ +
Sbjct: 339 AQHGF------------GKEAVWW-------------------FEEMRRVGIRPNEISFL 367
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRI--DLNHIVGGALINMYSRCGDIDKALQVFEEMK 178
VL+ACS G L+ G + M K I + H V ++++ R GD+++AL+ EEM
Sbjct: 368 SVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYV--TVVDLLGRAGDLNRALRFIEEMP 425
Query: 179 -ERDVTTYNSLIAGLAMH 195
E + +L+ MH
Sbjct: 426 IEPTAAIWKALLNACRMH 443
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/442 (42%), Positives = 293/442 (66%), Gaps = 3/442 (0%)
Query: 50 VVASTVMINCYVE--HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
V +++ Y + G V A ++F ++ KD V + +++ ++G A ++FR +
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277
Query: 108 QRDNVRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166
++ V N +T+ VL A S GAL +G+ IH + + ++ + IVG ++I+MY +CG
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337
Query: 167 IDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226
++ A + F+ MK ++V ++ ++IAG MHG + +A+E+F MI+ G+RP +TFV VL A
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAA 397
Query: 227 CSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHI 286
CSH GL G+ F +M +G+EP +EHYGC+VDLL R G ++AYD I MK+ PD I
Sbjct: 398 CSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSI 457
Query: 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346
+ SLL+AC+IH ++L E RL + S++ G Y+LLS+ YA +G+WK+ ++R MK
Sbjct: 458 IWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMK 517
Query: 347 EAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLH 406
G+ K PG S +E+N E+H F++GD HPQRE+IY+ + EL + + GY +T V H
Sbjct: 518 NRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCH 577
Query: 407 DIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKI 466
D+++ EKE L +HSE+LAI +G+++T P +T+ VVKNLRVC+DCH++IKLI+ I R+
Sbjct: 578 DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREF 637
Query: 467 IVRDRNRFHHFENGTCSCGDYW 488
+VRD RFHHF++G CSCGDYW
Sbjct: 638 VVRDAKRFHHFKDGGCSCGDYW 659
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 10/242 (4%)
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
+D+ S+ +I Y G +E+A +VF + ++ V WT+MI G NG A+ LF+++
Sbjct: 109 SDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDL 168
Query: 108 ------QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161
D + + + +V V+SACS++ A L IHS++ K D VG L++ Y
Sbjct: 169 LVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAY 228
Query: 162 SRCGD--IDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMI-NQGIRPTKV 218
++ G+ + A ++F+++ ++D +YNS+++ A G S EA E+FR ++ N+ + +
Sbjct: 229 AKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAI 288
Query: 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278
T VL A SH G + +G I + R G+E + I+D+ + GR E A
Sbjct: 289 TLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARKAFDR 347
Query: 279 MK 280
MK
Sbjct: 348 MK 349
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 157/333 (47%), Gaps = 52/333 (15%)
Query: 67 ENAFEVFSR-VKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA 125
+N +F+R V D W ++I L R+G+ A AL F M++ ++ P + C + A
Sbjct: 26 QNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKA 85
Query: 126 CSQLGALELGRWIH--SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVT 183
CS L + G+ H +++ ++ D+ V ALI MYS CG ++ A +VF+E+ +R++
Sbjct: 86 CSSLFDIFSGKQTHQQAFVFGYQSDI--FVSSALIVMYSTCGKLEDARKVFDEIPKRNIV 143
Query: 184 TYNSLIAGLAMHGRSIEAVEMFREMI------NQGIRPTKVTFVGVLNACS--------- 228
++ S+I G ++G +++AV +F++++ + + + V V++ACS
Sbjct: 144 SWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203
Query: 229 --HGGLVDLGFE----IFQSMTRDYG-----------------IEPQIEHYGCIVDLLSR 265
H ++ GF+ + ++ Y ++ Y I+ + ++
Sbjct: 204 SIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQ 263
Query: 266 VGRPEEAYD----FITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS-- 319
G EA++ + N + + I L ++L A G L++G+ I +++ D
Sbjct: 264 SGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVI 323
Query: 320 -GTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351
GT ++ + Y G+ + A + +MK V+
Sbjct: 324 VGTSII--DMYCKCGRVETARKAFDRMKNKNVR 354
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 7/161 (4%)
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
+DV+ T +I+ Y + G VE A + F R+K K+ WTAMI G +G A+AL+LF M
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379
Query: 108 QRDNVRPNEVTIVCVLSACSQLGA-LELGRWIHSYMGKHRID--LNHIVGGALINMYSRC 164
VRPN +T V VL+ACS G +E RW ++ G+ ++ L H G ++++ R
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY--GCMVDLLGRA 437
Query: 165 GDIDKALQVFEEMKER-DVTTYNSLIAGLAMHGRSIEAVEM 204
G + KA + + MK + D ++SL+A +H +++E E+
Sbjct: 438 GFLQKAYDLIQRMKMKPDSIIWSSLLAACRIH-KNVELAEI 477
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/490 (40%), Positives = 296/490 (60%), Gaps = 7/490 (1%)
Query: 2 GREIHGQVLKLGLRSNRSTRL--KLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINC 59
G+++H VL+ R + S LV LY KCG+F +A +F++MP D+V+ +++
Sbjct: 305 GKQVHAYVLR---REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMP-AKDLVSWNALLSG 360
Query: 60 YVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI 119
YV G + A +F +K K+ + W MI GL NG L LF M+R+ P +
Sbjct: 361 YVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAF 420
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179
+ +C+ LGA G+ H+ + K D + G ALI MY++CG +++A QVF M
Sbjct: 421 SGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC 480
Query: 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239
D ++N+LIA L HG EAV+++ EM+ +GIRP ++T + VL ACSH GLVD G +
Sbjct: 481 LDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKY 540
Query: 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG 299
F SM Y I P +HY ++DLL R G+ +A I ++ P + +LLS C++HG
Sbjct: 541 FDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHG 600
Query: 300 KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSI 359
++LG A +L GTY+LLSN +A++G+W+E ++R M++ GV+KE CS I
Sbjct: 601 NMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWI 660
Query: 360 EVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIE-DWEKEWALA 418
E+ ++H F++ D HP+ E +Y +Q+L + ++ GY P T VLHD+E D KE L
Sbjct: 661 EMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLT 720
Query: 419 IHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFE 478
HSE++A+ +GL+ P TTIR+ KNLR C DCH+ + ++ + +R II+RDR RFHHF
Sbjct: 721 THSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFR 780
Query: 479 NGTCSCGDYW 488
NG CSCG++W
Sbjct: 781 NGECSCGNFW 790
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 180/390 (46%), Gaps = 48/390 (12%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
R +HG ++ G + +L+++Y K E A QLFDE+ E D +A T M++ Y
Sbjct: 33 ARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISE-PDKIARTTMVSGYC 91
Query: 62 EHGLVENAFEVFSRVKV--KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI 119
G + A VF + V +DTV + AMI G N + A++LF +M+ + +P+ T
Sbjct: 92 ASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTF 151
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHI--VGGALINMYSRCGD----IDKALQV 173
VL+ + L A + + + + + +I V AL+++YS+C + A +V
Sbjct: 152 ASVLAGLA-LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKV 210
Query: 174 FEEMKERD--------------------------------VTTYNSLIAGLAMHGRSIEA 201
F+E+ E+D + YN++I+G G EA
Sbjct: 211 FDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEA 270
Query: 202 VEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261
+EM R M++ GI + T+ V+ AC+ GL+ LG ++ + R ++ +V
Sbjct: 271 LEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVS 328
Query: 262 LLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321
L + G+ +EA M A D + +LLS G + + I K + + + +
Sbjct: 329 LYYKCGKFDEARAIFEKMP-AKDLVSWNALLSGYVSSGHIGEAKLIFKEM---KEKNILS 384
Query: 322 YVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351
++++ + A +G +E +++ + MK G +
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFE 414
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 171/358 (47%), Gaps = 18/358 (5%)
Query: 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGE----FKDAMQLFDEMPECNDVVASTVMINC 59
+ H LK G S LV +Y KC A ++FDE+ E D + T M+
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILE-KDERSWTTMMTG 228
Query: 60 YVEHGLVENAFEVFSRVKVK-DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVT 118
YV++G + E+ + V + AMI G V G AL++ R M + +E T
Sbjct: 229 YVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFT 288
Query: 119 IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178
V+ AC+ G L+LG+ +H+Y+ + R D + +L+++Y +CG D+A +FE+M
Sbjct: 289 YPSVIRACATAGLLQLGKQVHAYVLR-REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMP 347
Query: 179 ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFE 238
+D+ ++N+L++G G EA +F+EM + I ++++ +++ + G + G +
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEEGLK 403
Query: 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN-MKIAPDHIMLG--SLLSAC 295
+F M R+ G EP + + + +G + +KI D + +L++
Sbjct: 404 LFSCMKRE-GFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMY 462
Query: 296 KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKE 353
G ++ Q+ R + C DS ++ L A G EAV + +M + G++ +
Sbjct: 463 AKCGVVEEARQVF-RTMPC--LDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPD 517
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/488 (38%), Positives = 290/488 (59%), Gaps = 33/488 (6%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+GR IH V+K+GL + L +Y KCG+ A LFD+M
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM---------------- 283
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
K + + W AMI G +NG A+D+F EM +VRP+ ++I
Sbjct: 284 ----------------KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
+SAC+Q+G+LE R ++ Y+G+ + + ALI+M+++CG ++ A VF+ +R
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDR 387
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
DV ++++I G +HGR+ EA+ ++R M G+ P VTF+G+L AC+H G+V G+ F
Sbjct: 388 DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF 447
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
M D+ I PQ +HY C++DLL R G ++AY+ I M + P + G+LLSACK H
Sbjct: 448 NRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRH 506
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
++LGE A++L +++G YV LSN YA++ W ++R +MKE G+ K+ GCS +E
Sbjct: 507 VELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
V + F +GD HP+ E+I ++++ ++ +K G+ + + LHD+ D E E L H
Sbjct: 567 VRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSH 626
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SER+AI YGLIST T +R+ KNLR C +CH+ KLI+ + R+I+VRD NRFHHF++G
Sbjct: 627 SERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDG 686
Query: 481 TCSCGDYW 488
CSCGDYW
Sbjct: 687 VCSCGDYW 694
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 156/300 (52%), Gaps = 34/300 (11%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR +H QV +LG ++ + L+ LY KC A +F+ +P
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP---------------- 181
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+ + V WTA++ +NGE AL++F +M++ +V+P+ V +V
Sbjct: 182 --------------LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVS 227
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VL+A + L L+ GR IH+ + K +++ + +L MY++CG + A +F++MK +
Sbjct: 228 VLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPN 287
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
+ +N++I+G A +G + EA++MF EMIN+ +RP ++ ++AC+ G ++ +++
Sbjct: 288 LILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYE 347
Query: 242 SMTR-DYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
+ R DY + I ++D+ ++ G E A + + + D ++ +++ +HG+
Sbjct: 348 YVGRSDYRDDVFIS--SALIDMFAKCGSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHGR 404
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 145/335 (43%), Gaps = 67/335 (20%)
Query: 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVE 62
++IH ++L LGL+ + KL+ G+ A Q+FD++P
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRP--------------- 82
Query: 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122
++F W A+I G RN AL ++ MQ V P+ T +
Sbjct: 83 --------QIFP---------WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHL 125
Query: 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFE--EMKER 180
L ACS L L++GR++H+ + + D + V LI +Y++C + A VFE + ER
Sbjct: 126 LKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPER 185
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS-----------H 229
+ ++ ++++ A +G +EA+E+F +M ++P V V VLNA + H
Sbjct: 186 TIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIH 245
Query: 230 GGLVDLGFEI----FQSMTRDYG---------------IEPQIEHYGCIVDLLSRVGRPE 270
+V +G EI S+ Y P + + ++ ++ G
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAR 305
Query: 271 EAYDF---ITNMKIAPDHIMLGSLLSACKIHGKLQ 302
EA D + N + PD I + S +SAC G L+
Sbjct: 306 EAIDMFHEMINKDVRPDTISITSAISACAQVGSLE 340
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/519 (40%), Positives = 311/519 (59%), Gaps = 32/519 (6%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINC-- 59
G ++H Q LK GL S+ L+ +YG CG + A ++FDEM + N V + V+ C
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184
Query: 60 ----------------------------YVEHGLVENAFEVFSRVKVKDTVCWTAMIDGL 91
Y++ G +E+A +FS + +D V W+ MI G+
Sbjct: 185 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 244
Query: 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNH 151
NG + FRE+QR + PNEV++ VLSACSQ G+ E G+ +H ++ K
Sbjct: 245 AHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIV 304
Query: 152 IVGGALINMYSRCGDIDKALQVFEEMKE-RDVTTYNSLIAGLAMHGRSIEAVEMFREMIN 210
V ALI+MYSRCG++ A VFE M+E R + ++ S+IAGLAMHG+ EAV +F EM
Sbjct: 305 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 364
Query: 211 QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270
G+ P ++F+ +L+ACSH GL++ G + F M R Y IEP+IEHYGC+VDL R G+ +
Sbjct: 365 YGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQ 424
Query: 271 EAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330
+AYDFI M I P I+ +LL AC HG ++L EQ+ +RL + +SG VLLSNAYA
Sbjct: 425 KAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYA 484
Query: 331 SSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQ 390
++GKWK+ IR M ++K S +EV +++F G+ + + ++K++E+
Sbjct: 485 TAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIIL 544
Query: 391 IVKLE-GYSPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCN 449
+K E GY+P L+D+E+ EKE ++ HSE+LA+ + L IR+VKNLR+C
Sbjct: 545 RLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICR 604
Query: 450 DCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGDYW 488
DCH+++KL + + +I+VRDRNRFH F++G+CSC DYW
Sbjct: 605 DCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 102/230 (44%), Gaps = 13/230 (5%)
Query: 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDN-VRPNEVTIVCVLSACSQLGALELGRWI 138
D + ++ G + E ++ +F EM R V P+ + V+ A +L G +
Sbjct: 69 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128
Query: 139 HSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRS 198
H KH ++ + VG LI MY CG ++ A +VF+EM + ++ +N++I
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 188
Query: 199 IEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGC 258
A E+F +M+ + V G + A G ++ IF M + +
Sbjct: 189 AGAREIFDKMLVRNHTSWNVMLAGYIKA----GELESAKRIFSEMPHRDDVS-----WST 239
Query: 259 IVDLLSRVGRPEEAYDFITNMK---IAPDHIMLGSLLSACKIHGKLQLGE 305
++ ++ G E++ + ++ ++P+ + L +LSAC G + G+
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGK 289
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 11/229 (4%)
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALI--NMYSRCGDIDKALQVFEEM 177
+ +L++C L AL IH K+ +D + G LI S + A ++
Sbjct: 9 LSLLNSCKNLRALTQ---IHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 65
Query: 178 KERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLNACSHGGLVDLG 236
E D +N+L+ G + +V +F EM+ +G + P +F V+ A + + G
Sbjct: 66 PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 125
Query: 237 FEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACK 296
F++ +G+E + ++ + G E A M P+ + ++++AC
Sbjct: 126 FQM-HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMH-QPNLVAWNAVITACF 183
Query: 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345
+ +I ++L R+ S +L Y +G+ + A +I ++M
Sbjct: 184 RGNDVAGAREIFDKML-VRNHTSWNVMLA--GYIKAGELESAKRIFSEM 229
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/458 (41%), Positives = 288/458 (62%), Gaps = 10/458 (2%)
Query: 31 CGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDG 90
CG K+ ++ +DV + +I+ + + G E+A VF + D + W ++I G
Sbjct: 183 CGIIKEGLE--------SDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGG 234
Query: 91 LVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN 150
+N AL+LF+ M+R + T+ VL AC+ L LELG H ++ K+ DL
Sbjct: 235 FAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDL- 293
Query: 151 HIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMIN 210
I+ AL++MY +CG ++ AL+VF +MKERDV T++++I+GLA +G S EA+++F M +
Sbjct: 294 -ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKS 352
Query: 211 QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270
G +P +T VGVL ACSH GL++ G+ F+SM + YGI+P EHYGC++DLL + G+ +
Sbjct: 353 SGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLD 412
Query: 271 EAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330
+A + M+ PD + +LL AC++ + L E AK+++ D+GTY LLSN YA
Sbjct: 413 DAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYA 472
Query: 331 SSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQ 390
+S KW +IR +M++ G++KEPGCS IEVN +IH FI+GD HPQ ++ KK+ +L
Sbjct: 473 NSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIH 532
Query: 391 IVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCND 450
+ GY P T VL D+E + E +L HSE+LA+ +GL++ IR+ KNLR+C D
Sbjct: 533 RLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGD 592
Query: 451 CHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGDYW 488
CH KL + + R I++RD R+HHF++G CSCGDYW
Sbjct: 593 CHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 133/258 (51%), Gaps = 7/258 (2%)
Query: 54 TVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVR 113
V+IN YV+ L+ +A ++F ++ ++ + WT MI + +AL+L M RDNVR
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159
Query: 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQV 173
PN T VL +C+ + + R +H + K ++ + V ALI+++++ G+ + AL V
Sbjct: 160 PNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216
Query: 174 FEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233
F+EM D +NS+I G A + RS A+E+F+ M G + T VL AC+ L+
Sbjct: 217 FDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL 276
Query: 234 DLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLS 293
+LG + + + + + +VD+ + G E+A MK D I +++S
Sbjct: 277 ELGMQAHVHIVK---YDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMIS 332
Query: 294 ACKIHGKLQLGEQIAKRL 311
+G Q ++ +R+
Sbjct: 333 GLAQNGYSQEALKLFERM 350
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/451 (41%), Positives = 282/451 (62%)
Query: 38 MQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEM 97
++ +EM + T ++N Y + G +E A VF + KD V W+ MI G N
Sbjct: 235 VKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFP 294
Query: 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGAL 157
++LF +M ++N++P++ +IV LS+C+ LGAL+LG W S + +H N + AL
Sbjct: 295 KEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANAL 354
Query: 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK 217
I+MY++CG + + +VF+EMKE+D+ N+ I+GLA +G + +F + GI P
Sbjct: 355 IDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDG 414
Query: 218 VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFIT 277
TF+G+L C H GL+ G F +++ Y ++ +EHYGC+VDL R G ++AY I
Sbjct: 415 STFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLIC 474
Query: 278 NMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKE 337
+M + P+ I+ G+LLS C++ QL E + K L+ ++G YV LSN Y+ G+W E
Sbjct: 475 DMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDE 534
Query: 338 AVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGY 397
A ++R M + G++K PG S IE+ ++HEF+ D HP ++IY K+++L ++L G+
Sbjct: 535 AAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGF 594
Query: 398 SPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKL 457
P+TE V D+E+ EKE L HSE+LA+ GLIST IRVVKNLRVC DCH ++KL
Sbjct: 595 VPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKL 654
Query: 458 IANITKRKIIVRDRNRFHHFENGTCSCGDYW 488
I+ IT+R+I+VRD NRFH F NG+CSC DYW
Sbjct: 655 ISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 160/307 (52%), Gaps = 20/307 (6%)
Query: 2 GREIHGQVLKLGLR-----SNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVM 56
G +HG L L+ S+R + L L KCG F+ +DV A T +
Sbjct: 106 GLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCG--------FN-----HDVAAMTSL 152
Query: 57 INCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE 116
++ Y G + +A ++F + + V WTA+ G +G A+DLF++M V+P+
Sbjct: 153 LSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDS 212
Query: 117 VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176
IV VLSAC +G L+ G WI YM + + N V L+N+Y++CG ++KA VF+
Sbjct: 213 YFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDS 272
Query: 177 MKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLG 236
M E+D+ T++++I G A + E +E+F +M+ + ++P + + VG L++C+ G +DLG
Sbjct: 273 MVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332
Query: 237 FEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACK 296
E S+ + + ++D+ ++ G ++ MK D +++ + +S
Sbjct: 333 -EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLA 390
Query: 297 IHGKLQL 303
+G ++L
Sbjct: 391 KNGHVKL 397
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 153/340 (45%), Gaps = 48/340 (14%)
Query: 54 TVMINCYVEHGL----VENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQR 109
T ++N ++ L + ++ +FS + + + ++I+G V N LDLF +++
Sbjct: 45 TFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRK 104
Query: 110 DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGG--ALINMYSRCGDI 167
+ + T VL AC++ + +LG +HS + K NH V +L+++YS G +
Sbjct: 105 HGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVK--CGFNHDVAAMTSLLSIYSGSGRL 162
Query: 168 DKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227
+ A ++F+E+ +R V T+ +L +G GR EA+++F++M+ G++P V VL+AC
Sbjct: 163 NDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSAC 222
Query: 228 SHGGLVDLGFEIFQSMTR------------------------------DYGIEPQIEHYG 257
H G +D G I + M D +E I +
Sbjct: 223 VHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWS 282
Query: 258 CIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314
++ + P+E + M + PD + LS+C G L LGE L+D
Sbjct: 283 TMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEW-GISLID- 340
Query: 315 RSADSGTYVLLSNA----YASSGKWKEAVQIRAKMKEAGV 350
+ T + ++NA YA G ++ +MKE +
Sbjct: 341 -RHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDI 379
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/487 (39%), Positives = 282/487 (57%), Gaps = 32/487 (6%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+EIHG +++ GL S+ L+++YGKCG
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCG----------------------------- 267
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
++ A +F ++ KD V WT+MID ++ LF E+ RPNE T
Sbjct: 268 ---CIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAG 324
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VL+AC+ L ELG+ +H YM + D +L++MY++CG+I+ A V + + D
Sbjct: 325 VLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPD 384
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
+ ++ SLI G A +G+ EA++ F ++ G +P VTFV VL+AC+H GLV+ G E F
Sbjct: 385 LVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFY 444
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
S+T + + +HY C+VDLL+R GR E+ I+ M + P + S+L C +G +
Sbjct: 445 SITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNI 504
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
L E+ A+ L + TYV ++N YA++GKW+E ++R +M+E GV K PG S E+
Sbjct: 505 DLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEI 564
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
+ H FI D HP QI + ++EL++ +K EGY P+T +VLHD+ED +KE L HS
Sbjct: 565 KRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHS 624
Query: 422 ERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGT 481
E+LA+ + ++ST+ T I+V KNLR C DCH IK I+NITKRKI VRD RFH FENG
Sbjct: 625 EKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQ 684
Query: 482 CSCGDYW 488
CSCGDYW
Sbjct: 685 CSCGDYW 691
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 117/271 (43%), Gaps = 19/271 (7%)
Query: 87 MIDGLVRNGEMARALDLF--REMQRDNV-------RPNEVTIVCVLSACSQLGALELGRW 137
+++ L R A+D+ +++ R+ V +P T ++ CSQ ALE G+
Sbjct: 47 VVERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKK 106
Query: 138 IHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGR 197
+H ++ ++ L+ MY++CG + A +VF+EM RD+ ++N ++ G A G
Sbjct: 107 VHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGL 166
Query: 198 SIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYG 257
EA ++F EM + ++ ++ + ++ M R P I
Sbjct: 167 LEEARKLFDEMTEK----DSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVS 222
Query: 258 CIVDLLSR---VGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314
V + + R +E + I + D ++ SL+ G + I ++++
Sbjct: 223 IAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVE- 281
Query: 315 RSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345
D ++ + + Y S +W+E + +++
Sbjct: 282 --KDVVSWTSMIDRYFKSSRWREGFSLFSEL 310
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/489 (41%), Positives = 300/489 (61%), Gaps = 2/489 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECN-DVVASTVMINCY 60
G++IH ++ G + L+ +Y +CG + A +L ++ + + T +++ Y
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
++ G + A +F +K +D V WTAMI G ++G A++LFR M RPN T+
Sbjct: 358 IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLA 417
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK-E 179
+LS S L +L G+ IH K + V ALI MY++ G+I A + F+ ++ E
Sbjct: 418 AMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCE 477
Query: 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239
RD ++ S+I LA HG + EA+E+F M+ +G+RP +T+VGV +AC+H GLV+ G +
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY 537
Query: 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG 299
F M I P + HY C+VDL R G +EA +FI M I PD + GSLLSAC++H
Sbjct: 538 FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHK 597
Query: 300 KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSI 359
+ LG+ A+RLL +SG Y L+N Y++ GKW+EA +IR MK+ V+KE G S I
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Query: 360 EVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAI 419
EV +++H F + D HP++ +IY M+++ +K GY P T VLHD+E+ KE L
Sbjct: 658 EVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRH 717
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSE+LAI +GLIST TT+R++KNLRVCNDCH+ IK I+ + R+IIVRD RFHHF++
Sbjct: 718 HSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKD 777
Query: 480 GTCSCGDYW 488
G CSC DYW
Sbjct: 778 GFCSCRDYW 786
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 118/415 (28%), Positives = 187/415 (45%), Gaps = 73/415 (17%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+++H ++KLGLR N S L+ +Y KCG+ A +FD M D+ + MI ++
Sbjct: 165 GKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMV-VRDISSWNAMIALHM 223
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDN-VRPNEVTIV 120
+ G ++ A F ++ +D V W +MI G + G RALD+F +M RD+ + P+ T+
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLA 283
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC---------------- 164
VLSAC+ L L +G+ IHS++ D++ IV ALI+MYSRC
Sbjct: 284 SVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTK 343
Query: 165 -----------------GDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFRE 207
GD+++A +F +K+RDV + ++I G HG EA+ +FR
Sbjct: 344 DLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRS 403
Query: 208 MINQGIRPTKVTFVGVLNACS-----------HGGLVDLGFEIFQ--------------- 241
M+ G RP T +L+ S HG V G EI+
Sbjct: 404 MVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG-EIYSVSVSNALITMYAKAG 462
Query: 242 ---SMTRDYGI---EPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLL 292
S +R + + E + ++ L++ G EEA + M + PDHI +
Sbjct: 463 NITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522
Query: 293 SACKIHGKLQLGEQIAKRLLDCRS--ADSGTYVLLSNAYASSGKWKEAVQIRAKM 345
SAC G + G Q + D Y + + + +G +EA + KM
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 176/380 (46%), Gaps = 42/380 (11%)
Query: 5 IHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHG 64
+H +V+K GL + L+ +Y K G A +LFDEMP +TV+ + Y + G
Sbjct: 36 VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVL-SAYSKRG 94
Query: 65 LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLS 124
+++ E F ++ +D+V WT MI G G+ +A+ + +M ++ + P + T+ VL+
Sbjct: 95 DMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLA 154
Query: 125 ACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD------------------ 166
+ + +E G+ +HS++ K + N V +L+NMY++CGD
Sbjct: 155 SVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISS 214
Query: 167 -------------IDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG- 212
+D A+ FE+M ERD+ T+NS+I+G G + A+++F +M+
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274
Query: 213 IRPTKVTFVGVLNACSHGGLVDLGFEIFQSM-TRDYGIEPQIEHYGCIVDLLSRVGRPEE 271
+ P + T VL+AC++ + +G +I + T + I + ++ + SR G E
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV--LNALISMYSRCGGVET 332
Query: 272 AYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGE--QIAKRLLDCRSADSGTYVLLSNAY 329
A I I + L + G ++LG+ Q + + D + + Y
Sbjct: 333 ARRLIEQRGTKDLKIEGFTAL----LDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGY 388
Query: 330 ASSGKWKEAVQIRAKMKEAG 349
G + EA+ + M G
Sbjct: 389 EQHGSYGEAINLFRSMVGGG 408
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/437 (43%), Positives = 281/437 (64%), Gaps = 2/437 (0%)
Query: 54 TVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD--N 111
T +++ Y G V+ A VF + V++ V W+AMI +NG+ AL FREM R+ +
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKD 280
Query: 112 VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171
PN VT+V VL AC+ L ALE G+ IH Y+ + +D V AL+ MY RCG ++
Sbjct: 281 SSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQ 340
Query: 172 QVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG 231
+VF+ M +RDV ++NSLI+ +HG +A+++F EM+ G PT VTFV VL ACSH G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400
Query: 232 LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSL 291
LV+ G +F++M RD+GI+PQIEHY C+VDLL R R +EA + +M+ P + GSL
Sbjct: 401 LVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSL 460
Query: 292 LSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351
L +C+IHG ++L E+ ++RL ++G YVLL++ YA + W E +++ ++ G+Q
Sbjct: 461 LGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520
Query: 352 KEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDW 411
K PG +EV +++ F+ D +P EQI+ + +L + +K +GY P T+ VL+++E
Sbjct: 521 KLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580
Query: 412 EKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDR 471
EKE + HSE+LA+ +GLI+T IR+ KNLR+C DCH K I+ +++I+VRD
Sbjct: 581 EKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDV 640
Query: 472 NRFHHFENGTCSCGDYW 488
NRFH F+NG CSCGDYW
Sbjct: 641 NRFHRFKNGVCSCGDYW 657
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
D +T +I Y + G V+ A +VF + + + W A+ L G L L+ +M
Sbjct: 110 QDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM 169
Query: 108 QRDNVRPNEVTIVCVLSAC----SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163
R V + T VL AC + L G+ IH+++ + + + L++MY+R
Sbjct: 170 NRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYAR 229
Query: 164 CGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMI--NQGIRPTKVTFV 221
G +D A VF M R+V +++++IA A +G++ EA+ FREM+ + P VT V
Sbjct: 230 FGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMV 289
Query: 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKI 281
VL AC+ ++ G I + R G++ + +V + R G+ E M
Sbjct: 290 SVLQACASLAALEQGKLIHGYILRR-GLDSILPVISALVTMYGRCGKLEVGQRVFDRMH- 347
Query: 282 APDHIMLGSLLSACKIHGKLQLGEQIAKRLL-DCRSADSGTYVLLSNAYASSGKWKEAVQ 340
D + SL+S+ +HG + QI + +L + S T+V + A + G +E +
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407
Query: 341 IRAKM-KEAGVQKE 353
+ M ++ G++ +
Sbjct: 408 LFETMWRDHGIKPQ 421
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 34/198 (17%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+G+ IHG +L+ GL S LV +YG+CG+ + ++FD M + DVV+ +I+ Y
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHD-RDVVSWNSLISSY 361
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
HG + +A+ +F EM + P VT V
Sbjct: 362 GVHGYGK-------------------------------KAIQIFEEMLANGASPTPVTFV 390
Query: 121 CVLSACSQLGALELGRWIHSYMGK-HRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK- 178
VL ACS G +E G+ + M + H I ++++ R +D+A ++ ++M+
Sbjct: 391 SVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRT 450
Query: 179 ERDVTTYNSLIAGLAMHG 196
E + SL+ +HG
Sbjct: 451 EPGPKVWGSLLGSCRIHG 468
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 83/343 (24%)
Query: 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR 146
+I L + G++ +A+ + + + + E+ I+C C +L +H ++ +
Sbjct: 52 LIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILC----CGHRSSLSDALRVHRHILDNG 107
Query: 147 IDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFR 206
D + + LI MYS G +D A +VF++ ++R + +N+L L + G E + ++
Sbjct: 108 SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYW 167
Query: 207 EMINQGIRPTKVTFVGVLNAC--SHGGLVDL--GFEIFQSMTRDYGIEPQIEHYGCIVDL 262
+M G+ + T+ VL AC S + L G EI +TR G + +VD+
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR-GYSSHVYIMTTLVDM 226
Query: 263 LSRVGRPEEAYDFITNMKI------------------------------------APDHI 286
+R G + A M + +P+ +
Sbjct: 227 YARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSV 286
Query: 287 MLGSLLSACK----------IH-------------------------GKLQLGEQIAKRL 311
+ S+L AC IH GKL++G+++ R+
Sbjct: 287 TMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRM 346
Query: 312 LDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354
D D ++ L ++Y G K+A+QI +M G P
Sbjct: 347 HD---RDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTP 386
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 283/487 (58%), Gaps = 33/487 (6%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR IH ++LGL N S L+ +Y KC E
Sbjct: 356 GRFIHKLSVELGLDRNVSVVNSLISMYCKCKE---------------------------- 387
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
V+ A +F +++ + V W AMI G +NG AL+ F +M+ V+P+ T V
Sbjct: 388 ----VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVS 443
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
V++A ++L +WIH + + +D N V AL++MY++CG I A +F+ M ER
Sbjct: 444 VITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH 503
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
VTT+N++I G HG A+E+F EM I+P VTF+ V++ACSH GLV+ G + F
Sbjct: 504 VTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFY 563
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
M +Y IE ++HYG +VDLL R GR EA+DFI M + P + G++L AC+IH +
Sbjct: 564 MMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNV 623
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
E+ A+RL + D G +VLL+N Y ++ W++ Q+R M G++K PGCS +E+
Sbjct: 624 NFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEI 683
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
NE+H F G HP ++IY +++L +K GY P T +VL +E+ KE L+ HS
Sbjct: 684 KNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHS 742
Query: 422 ERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGT 481
E+LAI +GL++T TTI V KNLRVC DCH+ K I+ +T R+I+VRD RFHHF+NG
Sbjct: 743 EKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGA 802
Query: 482 CSCGDYW 488
CSCGDYW
Sbjct: 803 CSCGDYW 809
Score = 138 bits (348), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 156/336 (46%), Gaps = 65/336 (19%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+EIHG ++ G S + LV++Y KCG + A QLFD M E N
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERN------------- 301
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
V W +MID V+N A+ +F++M + V+P +V+++
Sbjct: 302 -------------------VVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMG 342
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
L AC+ LG LE GR+IH + +D N V +LI+MY +C ++D A +F +++ R
Sbjct: 343 ALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRT 402
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS-----------HG 230
+ ++N++I G A +GR I+A+ F +M ++ ++P T+V V+ A + HG
Sbjct: 403 LVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHG 462
Query: 231 ---------------GLVDL----GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE 271
LVD+ G + + D E + + ++D G +
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKA 522
Query: 272 AYDFITNMK---IAPDHIMLGSLLSACKIHGKLQLG 304
A + M+ I P+ + S++SAC G ++ G
Sbjct: 523 ALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 168/351 (47%), Gaps = 46/351 (13%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+EIHG ++K G + L +Y KC + +A ++FD MPE
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPE--------------- 198
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+D V W ++ G +NG AL++ + M +N++P+ +TIV
Sbjct: 199 -----------------RDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVS 241
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VL A S L + +G+ IH Y + D + AL++MY++CG ++ A Q+F+ M ER+
Sbjct: 242 VLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERN 301
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V ++NS+I + EA+ +F++M+++G++PT V+ +G L+AC+ G ++ G
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIH 360
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMK----IAPDHIMLGSLLSACKI 297
++ + G++ + ++ + + + A ++ ++ + ++LG + I
Sbjct: 361 KLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPI 420
Query: 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS-----SGKWKEAVQIRA 343
L Q+ R + D+ TYV + A A KW V +R+
Sbjct: 421 DA-LNYFSQMRSRTV---KPDTFTYVSVITAIAELSITHHAKWIHGVVMRS 467
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 1/226 (0%)
Query: 54 TVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVR 113
T +++ + +G V+ A VF + K V + M+ G + ++ +AL F M+ D+V
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQV 173
P +L C L +G+ IH + K L+ L NMY++C +++A +V
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192
Query: 174 FEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233
F+ M ERD+ ++N+++AG + +G + A+EM + M + ++P+ +T V VL A S L+
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252
Query: 234 DLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279
+G EI R G + + +VD+ ++ G E A M
Sbjct: 253 SVGKEIHGYAMRS-GFDSLVNISTALVDMYAKCGSLETARQLFDGM 297
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 107/279 (38%), Gaps = 41/279 (14%)
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
+L CS L L R I + K+ + H L++++ R G +D+A +VFE + +
Sbjct: 43 LLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS-----------HG 230
Y++++ G A +A++ F M + P F +L C HG
Sbjct: 100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159
Query: 231 GLVDLGFEI-FQSMT------------------RDYGIEPQIEHYGCIVDLLSRVGRPEE 271
LV GF + +MT D E + + IV S+ G
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219
Query: 272 AYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA-DS--GTYVLL 325
A + + +M + P I + S+L A + +G++I + RS DS L
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAM--RSGFDSLVNISTAL 277
Query: 326 SNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNE 364
+ YA G + A Q+ M E V V NE
Sbjct: 278 VDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 316
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/522 (36%), Positives = 300/522 (57%), Gaps = 36/522 (6%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDE------------------ 43
GR +H LK + + RL LV++Y K G+ K A Q+F+E
Sbjct: 145 GRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLIN 204
Query: 44 -----------------MPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTA 86
MPE N ST +I YV+ G + A ++F + K+ V WT
Sbjct: 205 GYCRAKDMHMATTLFRSMPERNSGSWST-LIKGYVDSGELNRAKQLFELMPEKNVVSWTT 263
Query: 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR 146
+I+G + G+ A+ + EM ++PNE TI VLSACS+ GAL G IH Y+ +
Sbjct: 264 LINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNG 323
Query: 147 IDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFR 206
I L+ +G AL++MY++CG++D A VF M +D+ ++ ++I G A+HGR +A++ FR
Sbjct: 324 IKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFR 383
Query: 207 EMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV 266
+M+ G +P +V F+ VL AC + VDLG F SM DY IEP ++HY +VDLL R
Sbjct: 384 QMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRA 443
Query: 267 GRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326
G+ EA++ + NM I PD +L ACK H + E +++ LL+ G+Y+ L
Sbjct: 444 GKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLD 503
Query: 327 NAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQ 386
+AS G ++ + R +++ ++ G S IE++ ++++F GD H ++I K+
Sbjct: 504 KTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLD 563
Query: 387 ELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLR 446
E+ + +GY+P + +HDIE+ EKE IHSE+LA+ G + T P TTIR++KNLR
Sbjct: 564 EIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLR 623
Query: 447 VCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGDYW 488
+C DCHS++K ++ I++R I++RD +FHHF++G CSCGDYW
Sbjct: 624 ICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 148/356 (41%), Gaps = 50/356 (14%)
Query: 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVE 62
R +H Q+L+ G+ S+R A QL C+ ++ S
Sbjct: 46 RHVHAQILRRGVLSSRV-----------------AAQLV----SCSSLLKSP-------- 76
Query: 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122
+ + +F + ++ A+I GL N ++ F M R V+P+ +T V
Sbjct: 77 ----DYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFV 132
Query: 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE----MK 178
L + S+LG LGR +H+ K+ +D + V +L++MY++ G + A QVFEE +K
Sbjct: 133 LKSNSKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIK 192
Query: 179 ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFE 238
+ + +N LI G A +FR M + G +++ G ++ +
Sbjct: 193 KESILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDS----GELNRAKQ 248
Query: 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSAC 295
+F+ M E + + +++ S+ G E A M + P+ + ++LSAC
Sbjct: 249 LFELMP-----EKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSAC 303
Query: 296 KIHGKLQLGEQIAKRLLDCR-SADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350
G L G +I +LD D L + YA G+ A + + M +
Sbjct: 304 SKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDI 359
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 25/247 (10%)
Query: 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQV 173
P+E + ++ AC +L R +H+ + + + L+ V L++ S D +L +
Sbjct: 27 PDESHFISLIHACKDTASL---RHVHAQILRRGV-LSSRVAAQLVSCSSLLKSPDYSLSI 82
Query: 174 FEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233
F +ER+ N+LI GL + R +V F M+ G++P ++TF VL + S G
Sbjct: 83 FRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFR 142
Query: 234 DLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLL- 292
LG + + +++ ++ +VD+ ++ G+ + A+ +PD I S+L
Sbjct: 143 WLGRALHAATLKNF-VDCDSFVRLSLVDMYAKTGQLKHAFQVFEE---SPDRIKKESILI 198
Query: 293 ---------SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343
A +H L + +R +SG++ L Y SG+ A Q+
Sbjct: 199 WNVLINGYCRAKDMHMATTLFRSMPER-------NSGSWSTLIKGYVDSGELNRAKQLFE 251
Query: 344 KMKEAGV 350
M E V
Sbjct: 252 LMPEKNV 258
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/446 (42%), Positives = 277/446 (62%), Gaps = 9/446 (2%)
Query: 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ 108
D ++ Y + G +E A +VF R+ K V W +++ G +NG A+ +F +M+
Sbjct: 141 DTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMR 200
Query: 109 RDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID 168
P+ T V +LSAC+Q GA+ LG W+H Y+ +DLN +G ALIN+YSRCGD+
Sbjct: 201 ESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVG 260
Query: 169 KALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQ-GIRPTKVTFVGVLNAC 227
KA +VF++MKE +V + ++I+ HG +AVE+F +M + G P VTFV VL+AC
Sbjct: 261 KAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSAC 320
Query: 228 SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFI-----TNMKIA 282
+H GLV+ G +++ MT+ Y + P +EH+ C+VD+L R G +EAY FI T A
Sbjct: 321 AHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATA 380
Query: 283 PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIR 342
P + ++L ACK+H LG +IAKRL+ + G +V+LSN YA SGK E IR
Sbjct: 381 P--ALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIR 438
Query: 343 AKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTE 402
M ++K+ G S IEV N+ + F +GD H + +IY+ ++ L K GY+P +E
Sbjct: 439 DGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSE 498
Query: 403 VVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANIT 462
V+H +E+ EKE+AL HSE+LA+ +GL+ T I +VKNLR+C DCHS K I+ ++
Sbjct: 499 EVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVS 557
Query: 463 KRKIIVRDRNRFHHFENGTCSCGDYW 488
R+I VRD+ RFHHF+NG+CSC DYW
Sbjct: 558 NRQITVRDKLRFHHFQNGSCSCLDYW 583
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 145/282 (51%), Gaps = 10/282 (3%)
Query: 72 VFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA 131
+F V + D + ++I + + +R M NV P+ T V+ +C+ L A
Sbjct: 63 LFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSA 122
Query: 132 LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAG 191
L +G+ +H + L+ V AL+ YS+CGD++ A QVF+ M E+ + +NSL++G
Sbjct: 123 LRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSG 182
Query: 192 LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251
+G + EA+++F +M G P TFV +L+AC+ G V LG + Q + + G++
Sbjct: 183 FEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISE-GLDL 241
Query: 252 QIEHYGCIVDLLSR---VGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIA 308
++ +++L SR VG+ E +D + +A +++SA HG Q ++
Sbjct: 242 NVKLGTALINLYSRCGDVGKAREVFDKMKETNVAA----WTAMISAYGTHGYGQQAVELF 297
Query: 309 KRLL-DCRS-ADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348
++ DC ++ T+V + +A A +G +E + +M ++
Sbjct: 298 NKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKS 339
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/488 (39%), Positives = 278/488 (56%), Gaps = 32/488 (6%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EG++IH Q G S+ + LV LY +CG+
Sbjct: 609 EGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK--------------------------- 641
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
+E ++ F + + D + W A++ G ++G AL +F M R+ + N T
Sbjct: 642 -----IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFG 696
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
+ A S+ ++ G+ +H+ + K D V ALI+MY++CG I A + F E+ +
Sbjct: 697 SAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK 756
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
+ ++N++I + HG EA++ F +MI+ +RP VT VGVL+ACSH GLVD G F
Sbjct: 757 NEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYF 816
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
+SM +YG+ P+ EHY C+VD+L+R G A +FI M I PD ++ +LLSAC +H
Sbjct: 817 ESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKN 876
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
+++GE A LL+ DS TYVLLSN YA S KW R KMKE GV+KEPG S IE
Sbjct: 877 MEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIE 936
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
V N IH F +GD HP ++I++ Q+L + GY +L++++ +K+ + IH
Sbjct: 937 VKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIH 996
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SE+LAI +GL+S I V+KNLRVCNDCH+ IK ++ ++ R+IIVRD RFHHFE G
Sbjct: 997 SEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGG 1056
Query: 481 TCSCGDYW 488
CSC DYW
Sbjct: 1057 ACSCKDYW 1064
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 156/354 (44%), Gaps = 37/354 (10%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+++H KLG SN L+ LY KC +
Sbjct: 408 GQQLHAYTTKLGFASNNKIEGALLNLYAKCAD---------------------------- 439
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+E A + F +V++ V W M+ ++ + +FR+MQ + + PN+ T
Sbjct: 440 ----IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 495
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
+L C +LG LELG IHS + K LN V LI+MY++ G +D A + +D
Sbjct: 496 ILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKD 555
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V ++ ++IAG + +A+ FR+M+++GIR +V ++AC+ + G +I
Sbjct: 556 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA 615
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
G + +V L SR G+ EE+Y + A D+I +L+S + G
Sbjct: 616 QACVS-GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE-AGDNIAWNALVSGFQQSGNN 673
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASS--GKWKEAVQIRAKMKEAGVQKE 353
+ ++ R ++ D+ + S A+S K+ Q+ A + + G E
Sbjct: 674 EEALRVFVR-MNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 726
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 147/330 (44%), Gaps = 38/330 (11%)
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
+ V +I+ Y +G V+ A VF +++KD W AMI GL +N A A+ LF +M
Sbjct: 220 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM 279
Query: 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
+ P VLSAC ++ +LE+G +H + K + V AL+++Y G++
Sbjct: 280 YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNL 339
Query: 168 DKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227
A +F M +RD TYN+LI GL+ G +A+E+F+ M G+ P T ++ AC
Sbjct: 340 ISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVAC 399
Query: 228 SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-------- 279
S G + G ++ + T G + G +++L ++ E A D+
Sbjct: 400 SADGTLFRGQQL-HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 458
Query: 280 --------------------------KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD 313
+I P+ S+L C G L+LGEQI +++
Sbjct: 459 NVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 518
Query: 314 CRSADSGTYV--LLSNAYASSGKWKEAVQI 341
+ YV +L + YA GK A I
Sbjct: 519 T-NFQLNAYVCSVLIDMYAKLGKLDTAWDI 547
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 149/346 (43%), Gaps = 76/346 (21%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EGR++H Q+LKLGL SN KL + Y LF
Sbjct: 103 EGRKLHSQILKLGLDSNGCLSEKLFDFY-----------LFK------------------ 133
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
G + AF+VF + + W MI L + LF M +NV PNE T
Sbjct: 134 ---GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFS 190
Query: 121 CVLSACSQLG-ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179
VL AC A ++ IH+ + + + +V LI++YSR G +D A +VF+ ++
Sbjct: 191 GVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL 250
Query: 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS----------- 228
+D +++ ++I+GL+ + EA+ +F +M GI PT F VL+AC
Sbjct: 251 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 310
Query: 229 HGGLVDLGFE------------------------IFQSMTRDYGIEPQIEHYGCIVDLLS 264
HG ++ LGF IF +M++ + Y +++ LS
Sbjct: 311 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT-----YNTLINGLS 365
Query: 265 RVGRPEEAYDFITNMK---IAPDHIMLGSLLSACKIHGKLQLGEQI 307
+ G E+A + M + PD L SL+ AC G L G+Q+
Sbjct: 366 QCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQL 411
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 146/325 (44%), Gaps = 38/325 (11%)
Query: 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPECN---DVVASTVMINCYVEHGLVENAFEVF 73
N+ T +++ + G+ + Q+ ++ + N + +V+I+ Y + G ++ A+++
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548
Query: 74 SRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALE 133
R KD V WT MI G + +AL FR+M +R +EV + +SAC+ L AL+
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608
Query: 134 LGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLA 193
G+ IH+ + AL+ +YSRCG I+++ FE+ + D +N+L++G
Sbjct: 609 EGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQ 668
Query: 194 MHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQI 253
G + EA+ +F M +GI TF + A S + G ++ +T+ G + +
Sbjct: 669 QSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSET 727
Query: 254 E-------------------------------HYGCIVDLLSRVGRPEEAYDFITNM--- 279
E + I++ S+ G EA D M
Sbjct: 728 EVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 787
Query: 280 KIAPDHIMLGSLLSACKIHGKLQLG 304
+ P+H+ L +LSAC G + G
Sbjct: 788 NVRPNHVTLVGVLSACSHIGLVDKG 812
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 125/294 (42%), Gaps = 59/294 (20%)
Query: 104 FREMQRDNV-----RPNEVTIVCVLSACSQL-GALELGRWIHSYMGKHRIDLNHIVGGAL 157
F+E + D+V RPN T+ +L C + G+L+ GR +HS + K +D N + L
Sbjct: 67 FQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKL 126
Query: 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK 217
+ Y GD+ A +VF+EM ER + T+N +I LA E +F M+++ + P +
Sbjct: 127 FDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNE 186
Query: 218 VTFVGVLNAC------------------------------------SHGGLVDLGFEIFQ 241
TF GVL AC S G VDL +F
Sbjct: 187 GTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFD 246
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPE---EAYDFITNM---KIAPDHIMLGSLLSAC 295
+ +++ + V ++S + + E EA +M I P S+LSAC
Sbjct: 247 GL--------RLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC 298
Query: 296 KIHGKLQLGEQIAKRLLDCRSADSGTYV--LLSNAYASSGKWKEAVQIRAKMKE 347
K L++GEQ+ +L S TYV L + Y G A I + M +
Sbjct: 299 KKIESLEIGEQLHGLVLKL-GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ 351
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/488 (39%), Positives = 282/488 (57%), Gaps = 33/488 (6%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR++H Q L S LV++Y KC F++A +F +P+
Sbjct: 370 GRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQ--------------- 414
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+ TV WTA+I G V+ G L LF +M+ N+R ++ T
Sbjct: 415 -----------------RTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFAT 457
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VL A + +L LG+ +H+++ + N G L++MY++CG I A+QVFEEM +R+
Sbjct: 458 VLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRN 517
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
++N+LI+ A +G A+ F +MI G++P V+ +GVL ACSH G V+ G E FQ
Sbjct: 518 AVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQ 577
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
+M+ YGI P+ +HY C++DLL R GR EA + M PD IM S+L+AC+IH
Sbjct: 578 AMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQ 637
Query: 302 QLGEQIAKRLLDC-RSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L E+ A++L + D+ YV +SN YA++G+W++ ++ M+E G++K P S +E
Sbjct: 638 SLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVE 697
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
VN++IH F D HP ++I +K+ EL ++ EGY P T V+ D+++ K +L H
Sbjct: 698 VNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYH 757
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SERLA+ + LIST I V+KNLR C DCH+ IKLI+ I KR+I VRD +RFHHF G
Sbjct: 758 SERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEG 817
Query: 481 TCSCGDYW 488
CSCGDYW
Sbjct: 818 VCSCGDYW 825
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 14/264 (5%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+ R + +++K G ++ +VE + G+ A +++DEMP N V++ MI+ +
Sbjct: 31 DTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKN-TVSTNTMISGH 89
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDN--VRPNEVT 118
V+ G V +A ++F + + V WT ++ RN A LFR+M R + P+ VT
Sbjct: 90 VKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVT 149
Query: 119 IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI--VGGALINMYSRCGDIDKALQVFEE 176
+L C+ +H++ K D N V L+ Y +D A +FEE
Sbjct: 150 FTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEE 209
Query: 177 MKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL- 235
+ E+D T+N+LI G G E++ +F +M G +P+ TF GVL A GL D
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVV--GLHDFA 267
Query: 236 ------GFEIFQSMTRDYGIEPQI 253
+ +RD + QI
Sbjct: 268 LGQQLHALSVTTGFSRDASVGNQI 291
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 147/352 (41%), Gaps = 68/352 (19%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+++H + G + S ++++ Y K + LFDEMPE D V+ V+I+ Y
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPEL-DFVSYNVVISSYS 327
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+ E +L FREMQ
Sbjct: 328 QADQYE-------------------------------ASLHFFREMQCMGFDRRNFPFAT 356
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
+LS + L +L++GR +H D VG +L++MY++C ++A +F+ + +R
Sbjct: 357 MLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRT 416
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
++ +LI+G G +++F +M +R + TF VL A + + LG ++
Sbjct: 417 TVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHA 476
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
+ R +E G +VD+ ++ G ++A +
Sbjct: 477 FIIRSGNLENVFSGSG-LVDMYAKCGSIKDA----------------------------V 507
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKE 353
Q+ E++ R ++ ++ L +A+A +G + A+ AKM E+G+Q +
Sbjct: 508 QVFEEMPDR-------NAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPD 552
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/405 (20%), Positives = 158/405 (39%), Gaps = 86/405 (21%)
Query: 24 LVELYGKCGEFKDAMQLFDEM------------------PECNDVVA------------- 52
L+ Y + F +A +LF +M P CND V
Sbjct: 116 LMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVK 175
Query: 53 -----------STVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARAL 101
S V++ Y E ++ A +F + KD+V + +I G ++G ++
Sbjct: 176 LGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESI 235
Query: 102 DLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161
LF +M++ +P++ T VL A L LG+ +H+ + VG +++ Y
Sbjct: 236 HLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFY 295
Query: 162 SRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFV 221
S+ + + +F+EM E D +YN +I+ + + ++ FREM G F
Sbjct: 296 SKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFA 355
Query: 222 GVLNACSHGGLVDLGFEIF-QSMTRDYGIEPQIEHYG-CIVDLLSRVGRPEEA------- 272
+L+ ++ + +G ++ Q++ I H G +VD+ ++ EEA
Sbjct: 356 TMLSIAANLSSLQMGRQLHCQAL---LATADSILHVGNSLVDMYAKCEMFEEAELIFKSL 412
Query: 273 ------------------------YDFITNMK---IAPDHIMLGSLLSACKIHGKLQLGE 305
T M+ + D ++L A L LG+
Sbjct: 413 PQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGK 472
Query: 306 QIAKRLL---DCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
Q+ ++ + + SG+ L + YA G K+AVQ+ +M +
Sbjct: 473 QLHAFIIRSGNLENVFSGSG--LVDMYAKCGSIKDAVQVFEEMPD 515
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/489 (37%), Positives = 295/489 (60%), Gaps = 33/489 (6%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EG++IHGQV KLGL ++ + L+ +YG+CGE
Sbjct: 150 EGKQIHGQVFKLGLEADVFVQNSLINMYGRCGE--------------------------- 182
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM-QRDNVRPNEVTI 119
+E + VF +++ K W++M+ G + L LFR M N++ E +
Sbjct: 183 -----MELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGM 237
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179
V L AC+ GAL LG IH ++ ++ +LN IV +L++MY +CG +DKAL +F++M++
Sbjct: 238 VSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEK 297
Query: 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239
R+ TY+++I+GLA+HG A+ MF +MI +G+ P V +V VLNACSH GLV G +
Sbjct: 298 RNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRV 357
Query: 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG 299
F M ++ +EP EHYGC+VDLL R G EEA + I ++ I + ++ + LS C++
Sbjct: 358 FAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQ 417
Query: 300 KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSI 359
++LG+ A+ LL S + G Y+L+SN Y+ W + + R ++ G+++ PG S +
Sbjct: 418 NIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIV 477
Query: 360 EVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAI 419
E+ + H F+ D HP+ ++IYK + +++ +K EGYSP +L ++++ EK+ L
Sbjct: 478 ELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKG 537
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HS+++AI +GL+ T P + I++ +NLR+C+DCH+ K I+ I +R+I+VRDRNRFH F+
Sbjct: 538 HSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKG 597
Query: 480 GTCSCGDYW 488
GTCSC DYW
Sbjct: 598 GTCSCKDYW 606
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 144/288 (50%), Gaps = 5/288 (1%)
Query: 69 AFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ 128
A +F + T + MI G V AL + EM + P+ T C+L AC++
Sbjct: 85 AASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTR 144
Query: 129 LGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSL 188
L ++ G+ IH + K ++ + V +LINMY RCG+++ + VFE+++ + +++S+
Sbjct: 145 LKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSM 204
Query: 189 IAGLAMHGRSIEAVEMFREMINQ-GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY 247
++ A G E + +FR M ++ ++ + V L AC++ G ++LG I + R+
Sbjct: 205 VSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNI 264
Query: 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLG-EQ 306
E I +VD+ + G ++A M+ +++ +++S +HG+ +
Sbjct: 265 S-ELNIIVQTSLVDMYVKCGCLDKALHIFQKME-KRNNLTYSAMISGLALHGEGESALRM 322
Query: 307 IAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354
+K + + D YV + NA + SG KE ++ A+M + G + EP
Sbjct: 323 FSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEG-KVEP 369
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/491 (38%), Positives = 285/491 (58%), Gaps = 36/491 (7%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+++ GQ K GL SN S ++ ++ K +DA + F+ + E
Sbjct: 392 GKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSE--------------- 436
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
K+ V + +DG RN +A L E+ + + T
Sbjct: 437 -----------------KNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFAS 479
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
+LS + +G++ G IHS + K + N V ALI+MYS+CG ID A +VF M+ R+
Sbjct: 480 LLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRN 539
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V ++ S+I G A HG +I +E F +MI +G++P +VT+V +L+ACSH GLV G+ F
Sbjct: 540 VISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFN 599
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
SM D+ I+P++EHY C+VDLL R G +A++FI M D ++ + L AC++H
Sbjct: 600 SMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNT 659
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
+LG+ A+++L+ + Y+ LSN YA +GKW+E+ ++R KMKE + KE GCS IEV
Sbjct: 660 ELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEV 719
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWA----L 417
++IH+F +GD HP QIY ++ L +K GY P T++VLH +E+ E L
Sbjct: 720 GDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLL 779
Query: 418 AIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHF 477
HSE++A+ +GLIST +RV KNLRVC DCH+ +K I+ ++ R+I++RD NRFHHF
Sbjct: 780 YQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHF 839
Query: 478 ENGTCSCGDYW 488
++G CSC DYW
Sbjct: 840 KDGKCSCNDYW 850
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 154/323 (47%), Gaps = 18/323 (5%)
Query: 48 NDVVASTVMINCYVE-HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFRE 106
+DV +I+ +V+ ENA++VF ++ + V WT MI ++ G A+ F +
Sbjct: 200 SDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLD 259
Query: 107 MQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC-- 164
M ++ T+ V SAC++L L LG+ +HS+ R L V +L++MY++C
Sbjct: 260 MVLSGFESDKFTLSSVFSACAELENLSLGKQLHSW--AIRSGLVDDVECSLVDMYAKCSA 317
Query: 165 -GDIDKALQVFEEMKERDVTTYNSLIAGLAMH-GRSIEAVEMFREMINQG-IRPTKVTFV 221
G +D +VF+ M++ V ++ +LI G + + EA+ +F EMI QG + P TF
Sbjct: 318 DGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFS 377
Query: 222 GVLNACSHGGLVDLGFEIF-QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE---AYDFIT 277
AC + +G ++ Q+ R G+ ++ + + R E+ A++ ++
Sbjct: 378 SAFKACGNLSDPRVGKQVLGQAFKR--GLASNSSVANSVISMFVKSDRMEDAQRAFESLS 435
Query: 278 NMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKE 337
+ + L +L +I +R L + T+ L + A+ G ++
Sbjct: 436 EKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL---GVSAFTFASLLSGVANVGSIRK 492
Query: 338 AVQIRAKMKEAGVQ-KEPGCSSI 359
QI +++ + G+ +P C+++
Sbjct: 493 GEQIHSQVVKLGLSCNQPVCNAL 515
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 132/275 (48%), Gaps = 44/275 (16%)
Query: 72 VFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRP-NEVTIVCVLSACSQLG 130
V +R+ V D + + G +R ALDL M RD +RP + VT +L +C +
Sbjct: 22 VSNRINVADRLILRHLNAGDLRGA--VSALDL---MARDGIRPMDSVTFSSLLKSCIRAR 76
Query: 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK---ERDVTTYNS 187
LG+ +H+ + + I+ + ++ +LI++YS+ GD KA VFE M+ +RDV ++++
Sbjct: 77 DFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSA 136
Query: 188 LIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG-----GLVDLGF----- 237
++A +GR ++A+++F E + G+ P + V+ ACS+ G V LGF
Sbjct: 137 MMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTG 196
Query: 238 -------------EIF----QSMTRDYGI-----EPQIEHYGCIVDLLSRVGRPEEAYDF 275
++F S Y + E + + ++ ++G P EA F
Sbjct: 197 HFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRF 256
Query: 276 ITNMKIA---PDHIMLGSLLSACKIHGKLQLGEQI 307
+M ++ D L S+ SAC L LG+Q+
Sbjct: 257 FLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 150/338 (44%), Gaps = 42/338 (12%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+++H ++ GL + LV++Y KC
Sbjct: 288 GKQLHSWAIRSGLVDD--VECSLVDMYAKCSA---------------------------- 317
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMA-RALDLFREM-QRDNVRPNEVTI 119
G V++ +VF R++ + WTA+I G ++N +A A++LF EM + +V PN T
Sbjct: 318 -DGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTF 376
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179
AC L +G+ + K + N V ++I+M+ + ++ A + FE + E
Sbjct: 377 SSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSE 436
Query: 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239
+++ +YN+ + G + +A ++ E+ + + + TF +L+ ++ G + G +I
Sbjct: 437 KNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQI 496
Query: 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEA---YDFITNMKIAPDHIMLGSLLSACK 296
+ + G+ ++ + S+ G + A ++F+ N + I S+++
Sbjct: 497 HSQVVK-LGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNV----ISWTSMITGFA 551
Query: 297 IHG-KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG 333
HG +++ E + + + + TYV + +A + G
Sbjct: 552 KHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVG 589
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 34/200 (17%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+G +IH QV+KLGL N+ L+ +Y KCG A ++F+ M E +V++ T MI +
Sbjct: 492 KGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFM-ENRNVISWTSMITGF 550
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
+HG R L+ F +M + V+PNEVT V
Sbjct: 551 AKHGFA-------------------------------IRVLETFNQMIEEGVKPNEVTYV 579
Query: 121 CVLSACSQLGALELG-RWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK- 178
+LSACS +G + G R +S H+I ++++ R G + A + M
Sbjct: 580 AILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPF 639
Query: 179 ERDVTTYNSLIAGLAMHGRS 198
+ DV + + + +H +
Sbjct: 640 QADVLVWRTFLGACRVHSNT 659
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 8/201 (3%)
Query: 41 FDEMPECNDVVASTVMINCYVEHG---LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEM 97
FD P D V +I+ Y + G E+ FE R +D V W+AM+ NG
Sbjct: 91 FDIEP---DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRE 147
Query: 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RIDLNHIVGGA 156
A+ +F E + PN+ V+ ACS + +GR ++ K + + VG +
Sbjct: 148 LDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCS 207
Query: 157 LINMYSRC-GDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP 215
LI+M+ + + A +VF++M E +V T+ +I G EA+ F +M+ G
Sbjct: 208 LIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFES 267
Query: 216 TKVTFVGVLNACSHGGLVDLG 236
K T V +AC+ + LG
Sbjct: 268 DKFTLSSVFSACAELENLSLG 288
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/441 (39%), Positives = 278/441 (63%), Gaps = 1/441 (0%)
Query: 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM- 107
D+ S +++ Y + G ++ A VFS ++VKD + W +I G +N AL LF +
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490
Query: 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
+ P+E T+ CVL AC+ L A + GR IH Y+ ++ + V +L++MY++CG +
Sbjct: 491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550
Query: 168 DKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227
A +F+++ +D+ ++ +IAG MHG EA+ +F +M GI +++FV +L AC
Sbjct: 551 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610
Query: 228 SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIM 287
SH GLVD G+ F M + IEP +EHY CIVD+L+R G +AY FI NM I PD +
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATI 670
Query: 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
G+LL C+IH ++L E++A+++ + ++G YVL++N YA + KW++ ++R ++ +
Sbjct: 671 WGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQ 730
Query: 348 AGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHD 407
G++K PGCS IE+ ++ F+ GD +P+ E I +++++ + EGYSP T+ L D
Sbjct: 731 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALID 790
Query: 408 IEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKII 467
E+ EKE AL HSE+LA+ G+IS+ IRV KNLRVC DCH M K ++ +T+R+I+
Sbjct: 791 AEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIV 850
Query: 468 VRDRNRFHHFENGTCSCGDYW 488
+RD NRFH F++G CSC +W
Sbjct: 851 LRDSNRFHQFKDGHCSCRGFW 871
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 131/281 (46%), Gaps = 35/281 (12%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G ++HG +LK G S LV Y K A ++FDEM E
Sbjct: 214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTE--------------- 258
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+D + W ++I+G V NG + L +F +M + + TIV
Sbjct: 259 -----------------RDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 301
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
V + C+ + LGR +HS K L++MYS+CGD+D A VF EM +R
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V +Y S+IAG A G + EAV++F EM +GI P T VLN C+ L+D G + +
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 421
Query: 242 SMT-RDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKI 281
+ D G + + + ++D+ ++ G +EA + M++
Sbjct: 422 WIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRV 460
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 145/301 (48%), Gaps = 37/301 (12%)
Query: 54 TVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVR 113
+++ Y + G +++A VF + + V +T+MI G R G A+ LF EM+ + +
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394
Query: 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQV 173
P+ T+ VL+ C++ L+ G+ +H ++ ++ + + V AL++MY++CG + +A V
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 454
Query: 174 FEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLNACSHGGL 232
F EM+ +D+ ++N++I G + + + EA+ +F ++ + P + T VL AC+
Sbjct: 455 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 514
Query: 233 VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLL 292
D G EI + R+ G +VD+ ++ G ++L +L
Sbjct: 515 FDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCG-----------------ALLLAHML 556
Query: 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352
D S D ++ ++ Y G KEA+ + +M++AG++
Sbjct: 557 ------------------FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 598
Query: 353 E 353
+
Sbjct: 599 D 599
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 165/388 (42%), Gaps = 82/388 (21%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+G+E+ + G + + KL +Y CG+ K+A ++FDE
Sbjct: 112 DGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDE----------------- 154
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
VK++ + W +++ L ++G+ + ++ LF++M V + T
Sbjct: 155 ---------------VKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFS 199
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
CV + S L ++ G +H ++ K + VG +L+ Y + +D A +VF+EM ER
Sbjct: 200 CVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER 259
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF--- 237
DV ++NS+I G +G + + + +F +M+ GI T V V C+ L+ LG
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319
Query: 238 --------------------------------EIFQSMTRDYGIEPQIEHYGCIVDLLSR 265
+F+ M+ + + Y ++ +R
Sbjct: 320 SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS-----DRSVVSYTSMIAGYAR 374
Query: 266 VGRPEEAYDFITNMK---IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTY 322
G EA M+ I+PD + ++L+ C + L G+++ + + + D G
Sbjct: 375 EGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWI---KENDLGFD 431
Query: 323 VLLSNA----YASSGKWKEAVQIRAKMK 346
+ +SNA YA G +EA + ++M+
Sbjct: 432 IFVSNALMDMYAKCGSMQEAELVFSEMR 459
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 36/198 (18%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
+GREIHG +++ G S+R LV++Y KCG A LFD++ D+V+ TVMI Y
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIAS-KDLVSWTVMIAGY 575
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
HG + A+ LF +M++ + +E++ V
Sbjct: 576 GMHGFGK-------------------------------EAIALFNQMRQAGIEADEISFV 604
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVG--GALINMYSRCGDIDKALQVFEEMK 178
+L ACS G ++ G W + +H + V +++M +R GD+ KA + E M
Sbjct: 605 SLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMP 663
Query: 179 -ERDVTTYNSLIAGLAMH 195
D T + +L+ G +H
Sbjct: 664 IPPDATIWGALLCGCRIH 681
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 94 NGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIV 153
+G + A+ L + ++ P T+ VL C+ +L+ G+ + +++ + ++ +
Sbjct: 74 SGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNL 131
Query: 154 GGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213
G L MY+ CGD+ +A +VF+E+K +N L+ LA G ++ +F++M++ G+
Sbjct: 132 GSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGV 191
Query: 214 RPTKVTFVGVLNACS-----HGGLVDLGF 237
TF V + S HGG GF
Sbjct: 192 EMDSYTFSCVSKSFSSLRSVHGGEQLHGF 220
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 283/489 (57%), Gaps = 34/489 (6%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G ++HG VL+ G ++ S L++ YGKC + + + +F EM
Sbjct: 228 GMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEM----------------- 270
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
K+ V W +++ V+N E +A L+ ++D V ++ I
Sbjct: 271 ---------------GTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISS 315
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VLSAC+ + LELGR IH++ K ++ VG AL++MY +CG I+ + Q F+EM E++
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 375
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK--VTFVGVLNACSHGGLVDLGFEI 239
+ T NSLI G A G+ A+ +F EM +G PT +TFV +L+ACS G V+ G +I
Sbjct: 376 LVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKI 435
Query: 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG 299
F SM YGIEP EHY CIVD+L R G E AY+FI M I P + G+L +AC++HG
Sbjct: 436 FDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHG 495
Query: 300 KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSI 359
K QLG A+ L DSG +VLLSN +A++G+W EA +R ++K G++K G S I
Sbjct: 496 KPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWI 555
Query: 360 EVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAI 419
V N++H F D H ++I + +L+ ++ GY P ++ L+D+E+ EK ++
Sbjct: 556 TVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSH 615
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSE+LA+ +GL+S IR+ KNLR+C DCHS K ++ KR+IIVRD NRFH F++
Sbjct: 616 HSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKD 675
Query: 480 GTCSCGDYW 488
G CSC DYW
Sbjct: 676 GICSCKDYW 684
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 1/227 (0%)
Query: 53 STVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNV 112
+ +IN Y + E+A V ++ V WT++I GL +NG + AL F EM+R+ V
Sbjct: 45 ANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGV 104
Query: 113 RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQ 172
PN+ T C A + L G+ IH+ K L+ VG + +MY + D A +
Sbjct: 105 VPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARK 164
Query: 173 VFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGL 232
+F+E+ ER++ T+N+ I+ GR EA+E F E P +TF LNACS
Sbjct: 165 LFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLH 224
Query: 233 VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279
++LG ++ + R G + + ++D + + + T M
Sbjct: 225 LNLGMQLHGLVLRS-GFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEM 270
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 139/312 (44%), Gaps = 10/312 (3%)
Query: 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ 108
DV + Y + L ++A ++F + ++ W A I V +G A++ F E +
Sbjct: 142 DVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFR 201
Query: 109 RDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID 168
R + PN +T L+ACS L LG +H + + D + V LI+ Y +C I
Sbjct: 202 RIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIR 261
Query: 169 KALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228
+ +F EM ++ ++ SL+A + +A ++ + + VL+AC+
Sbjct: 262 SSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACA 321
Query: 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG---RPEEAYDFITNMKIAPDH 285
++LG I + +E I +VD+ + G E+A+D + + +
Sbjct: 322 GMAGLELGRSIHAHAVKAC-VERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRN 380
Query: 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDC-RSADSGTYVLLSNAYASSGKWKEAVQIRAK 344
++G ++ L L E++A R C + + T+V L +A + +G + ++I
Sbjct: 381 SLIGGYAHQGQVDMALALFEEMAPR--GCGPTPNYMTFVSLLSACSRAGAVENGMKIFDS 438
Query: 345 MKEA-GVQKEPG 355
M+ G+ EPG
Sbjct: 439 MRSTYGI--EPG 448
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,411,683
Number of Sequences: 539616
Number of extensions: 7268432
Number of successful extensions: 25901
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 18534
Number of HSP's gapped (non-prelim): 2469
length of query: 488
length of database: 191,569,459
effective HSP length: 121
effective length of query: 367
effective length of database: 126,275,923
effective search space: 46343263741
effective search space used: 46343263741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)